Citrus Sinensis ID: 023494
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | 2.2.26 [Sep-21-2011] | |||||||
| Q43157 | 285 | Ribulose-phosphate 3-epim | N/A | no | 1.0 | 0.985 | 0.859 | 1e-139 | |
| Q43843 | 280 | Ribulose-phosphate 3-epim | N/A | no | 0.985 | 0.989 | 0.857 | 1e-138 | |
| Q9ZTP5 | 274 | Ribulose-phosphate 3-epim | yes | no | 0.879 | 0.901 | 0.886 | 1e-125 | |
| P74061 | 230 | Ribulose-phosphate 3-epim | N/A | no | 0.786 | 0.960 | 0.683 | 3e-87 | |
| O34557 | 217 | Ribulose-phosphate 3-epim | yes | no | 0.765 | 0.990 | 0.628 | 6e-69 | |
| Q04539 | 241 | Ribulose-phosphate 3-epim | yes | no | 0.793 | 0.925 | 0.493 | 5e-55 | |
| P40117 | 241 | Ribulose-phosphate 3-epim | no | no | 0.736 | 0.858 | 0.516 | 3e-54 | |
| P44756 | 224 | Ribulose-phosphate 3-epim | yes | no | 0.754 | 0.946 | 0.497 | 3e-53 | |
| O67098 | 222 | Ribulose-phosphate 3-epim | yes | no | 0.747 | 0.945 | 0.481 | 9e-53 | |
| P45455 | 210 | Ribulose-phosphate 3-epim | N/A | no | 0.725 | 0.971 | 0.502 | 5e-52 |
| >sp|Q43157|RPE_SPIOL Ribulose-phosphate 3-epimerase, chloroplastic OS=Spinacia oleracea GN=RPE PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 495 bits (1275), Expect = e-139, Method: Compositional matrix adjust.
Identities = 245/285 (85%), Positives = 262/285 (91%), Gaps = 4/285 (1%)
Query: 1 MSTGSLCSST--TQINGFTGGFMLQK--TNLNQPSSLSFTRRRIQTIVKASARVDKFSKS 56
MS SLC ST +QINGF GG ++K + + P+SL+FTRR++QT+VKA++RVDKFSKS
Sbjct: 1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKS 60
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL
Sbjct: 61 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
PLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T
Sbjct: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGT 180
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC+EKGVNPWIEVDGGV
Sbjct: 181 PLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVT 240
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP+ VAV
Sbjct: 241 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVAV 285
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Spinacia oleracea (taxid: 3562) EC: 5EC: .EC: 1EC: .EC: 3EC: .EC: 1 |
| >sp|Q43843|RPE_SOLTU Ribulose-phosphate 3-epimerase, chloroplastic (Fragment) OS=Solanum tuberosum PE=1 SV=1 | Back alignment and function description |
|---|
Score = 490 bits (1262), Expect = e-138, Method: Compositional matrix adjust.
Identities = 240/280 (85%), Positives = 260/280 (92%), Gaps = 3/280 (1%)
Query: 5 SLCSST---TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVS 61
SL SST +QI+GF G LQK + + P+SL+FTRRRIQT+V AS+RVDKFSKSDIIVS
Sbjct: 1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVS 60
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
PSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVH
Sbjct: 61 PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVH 120
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
LMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AI
Sbjct: 121 LMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI 180
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
E VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NPWIEVDGGVGPKNAY
Sbjct: 181 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAY 240
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
KVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+AVAV
Sbjct: 241 KVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPEAVAV 280
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Solanum tuberosum (taxid: 4113) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|Q9ZTP5|RPE_ORYSJ Ribulose-phosphate 3-epimerase, chloroplastic OS=Oryza sativa subsp. japonica GN=RPE PE=1 SV=2 | Back alignment and function description |
|---|
Score = 448 bits (1153), Expect = e-125, Method: Compositional matrix adjust.
Identities = 219/247 (88%), Positives = 235/247 (95%)
Query: 33 LSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVM 92
L+F+ R V+AS+RVDKFSK+DIIVSPSILSANF+KLGEQVKAVE+AGCDWIHVDVM
Sbjct: 26 LAFSSPRKAFRVRASSRVDKFSKNDIIVSPSILSANFSKLGEQVKAVEVAGCDWIHVDVM 85
Query: 93 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152
DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI
Sbjct: 86 DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 145
Query: 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212
HLHRT+NQIK LGAKAGVVLNPAT L+AI+ VLDVVDLVLIMSVNPGFGGQSFIESQVKK
Sbjct: 146 HLHRTVNQIKSLGAKAGVVLNPATPLTAIDYVLDVVDLVLIMSVNPGFGGQSFIESQVKK 205
Query: 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
I++LRR+C EKGVNPWIEVDGGVGPKNAYKVIEAGANA+VAGSAVFGA DYAEAIKGIKT
Sbjct: 206 IAELRRLCAEKGVNPWIEVDGGVGPKNAYKVIEAGANAIVAGSAVFGAPDYAEAIKGIKT 265
Query: 273 SKRPQAV 279
S++P AV
Sbjct: 266 SQKPVAV 272
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Oryza sativa subsp. japonica (taxid: 39947) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|P74061|RPE_SYNY3 Ribulose-phosphate 3-epimerase OS=Synechocystis sp. (strain PCC 6803 / Kazusa) GN=rpe PE=1 SV=3 | Back alignment and function description |
|---|
Score = 321 bits (823), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 151/221 (68%), Positives = 187/221 (84%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 4 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 63
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T
Sbjct: 64 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 123
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG+
Sbjct: 124 PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 183
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRP+
Sbjct: 184 PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Synechocystis sp. (strain PCC 6803 / Kazusa) (taxid: 1111708) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|O34557|RPE_BACSU Ribulose-phosphate 3-epimerase OS=Bacillus subtilis (strain 168) GN=rpe PE=3 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 137/218 (62%), Positives = 164/218 (75%), Gaps = 3/218 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
I V+PSILSA+FA LG ++K VE G D IH+DVMDG FVPNITIGPL+V+A+RPVTDLP
Sbjct: 2 IKVAPSILSADFAALGNEIKDVEKGGADCIHIDVMDGHFVPNITIGPLIVEAVRPVTDLP 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLMI EP++ +P F KAGADI+SVH E HLHRT+ IK+ G KAGVVLNP T
Sbjct: 62 LDVHLMIEEPDRYIPAFAKAGADILSVHAEACP--HLHRTIQLIKEQGVKAGVVLNPHTP 119
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIEVDGGVG 236
+ IE V D +DLVL+M+VNPGFGGQ FI S + KI +++RM EKG + IEVDGGV
Sbjct: 120 VQVIEHVFDDLDLVLLMTVNPGFGGQKFIHSVLPKIKEVKRMADEKGKKDLLIEVDGGVN 179
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274
+ A VIEAGAN LVAGSAV+G D +AI I+ SK
Sbjct: 180 KETAPLVIEAGANLLVAGSAVYGQSDRKKAISEIRGSK 217
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Bacillus subtilis (strain 168) (taxid: 224308) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|Q04539|RPEP_CUPNH Ribulose-phosphate 3-epimerase, plasmid OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1 | Back alignment and function description |
|---|
Score = 214 bits (545), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 6/229 (2%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
S+ I ++PSILSA+FA+LGE+V A+E G D +H DVMD +V N+TIGPLV +A+RP+
Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPL 71
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
+P+DVHLM+ + +P F KAGA+++S H E S H+ RT+ I+D G KAG+VLN
Sbjct: 72 VSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR----RMCLEKGVNPWI 229
PAT LS ++ LD +DLVL+MSVNPGFGGQ+FI + K+ R R G W+
Sbjct: 130 PATPLSWLDHTLDKLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVAAGGRPVWL 189
Query: 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278
E+DGGV N ++ AGA+ VAGSAVFGA D +GI R A
Sbjct: 190 EIDGGVKADNITEIARAGADTFVAGSAVFGAPDADGGYRGILHRLREAA 238
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|P40117|RPEC_CUPNH Ribulose-phosphate 3-epimerase, chromosomal OS=Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1 | Back alignment and function description |
|---|
Score = 212 bits (539), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/213 (51%), Positives = 145/213 (68%), Gaps = 6/213 (2%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
S+ I ++PSILSA+FA+LGE+V A+E G D +H DVMD +VPN+TIGPLV +A+RP+
Sbjct: 12 SQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPL 71
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
+P+DVHLM+ + +P F KAGA+I+S H E S H+ RT+ I+D G KAG+VLN
Sbjct: 72 VSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR--HVDRTIGLIRDHGCKAGLVLN 129
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR----RMCLEKGVNPWI 229
PAT L ++ LD +DLVL+MSVNPGFGGQ+FI + K+ R R G W+
Sbjct: 130 PATPLGWLDHTLDQLDLVLLMSVNPGFGGQAFIPGVLDKVRQARARIDRQVDAGGRPVWL 189
Query: 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 262
E+DGGV N + AGA+ VAGSAVFGA D
Sbjct: 190 EIDGGVKADNIAAIARAGADTFVAGSAVFGAPD 222
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Cupriavidus necator (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) (taxid: 381666) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|P44756|RPE_HAEIN Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=rpe PE=3 SV=1 | Back alignment and function description |
|---|
Score = 208 bits (530), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/215 (49%), Positives = 146/215 (67%), Gaps = 3/215 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+ A+LG+ V+ V AG D IH DVMD +VPN+T GP V ALR P
Sbjct: 5 LIAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAP 64
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ +PDF KAGA+ ++ H E S H+ R+L I+D G K+G+V NPA
Sbjct: 65 IDVHLMVKPVDRIIPDFAKAGANYITFHPESSE--HIDRSLQLIRDCGCKSGLVFNPAMP 122
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
LS ++ VLD VD+VL+MSVNPGFGGQSFI + +KK+ R++ E G + +EVDGGV
Sbjct: 123 LSYLDYVLDKVDVVLLMSVNPGFGGQSFIPATLKKLQQARKIIDESGYDIRLEVDGGVKV 182
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
N ++ AGA+ VAGSA+FG DY + I I+T
Sbjct: 183 DNIAEIAAAGADMFVAGSAIFGKPDYKQVIDQIRT 217
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Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|O67098|RPE_AQUAE Ribulose-phosphate 3-epimerase OS=Aquifex aeolicus (strain VF5) GN=rpe PE=3 SV=1 | Back alignment and function description |
|---|
Score = 207 bits (526), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 146/216 (67%), Gaps = 6/216 (2%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
+++PSIL+ ++ +GEQ++A G D +H DVMDG FVPNIT G ++ +R LP+
Sbjct: 3 LLAPSILAGDWWCIGEQIQATIRGGADILHYDVMDGHFVPNITAGYEILSHIRKRASLPI 62
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
D HLMI P++ +P F++AGA+ +SVH E + H+HRTL IK+LGAKAGVV+NP TSL
Sbjct: 63 DAHLMIENPDKYIPKFVEAGANWISVHIE--NNYHIHRTLQLIKELGAKAGVVVNPGTSL 120
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP--WIEVDGGVG 236
SAIE L D VL+MSVNPGF GQ FIE ++++ L+ M +NP IE+DGG+
Sbjct: 121 SAIEEALYYADYVLLMSVNPGFSGQKFIERSIERLRILKEM--RDRINPSCLIEIDGGIK 178
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
N +V+ AGA+ +V GS +FGAKD + +K+
Sbjct: 179 ENNIAEVVRAGADVVVVGSGIFGAKDIEAQTRKLKS 214
|
Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Aquifex aeolicus (strain VF5) (taxid: 224324) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
| >sp|P45455|RPE_SERMA Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1 | Back alignment and function description |
|---|
Score = 204 bits (520), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/207 (50%), Positives = 142/207 (68%), Gaps = 3/207 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDL 116
+++PSILSA+FA+LGE V AG D +H DVMD +VPN+TIGP+V +ALR
Sbjct: 4 FLIAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITA 63
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
P+DVHLM+ ++ VPDF KAGA +S H E S H+ RT+ IK+ G KAG+V NPAT
Sbjct: 64 PIDVHLMVKPVDRIVPDFAKAGASYISFHPEASE--HVDRTIQLIKEHGCKAGLVFNPAT 121
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
LS ++ V+D +D++L+MSVNPGFGGQSFI + K+ +R++ + G + +EVDGGV
Sbjct: 122 PLSYLDYVMDKIDVILLMSVNPGFGGQSFIHGTLDKLRQVRKLIDDSGRDIRLEVDGGVK 181
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDY 263
N ++ AGA+ VAGSA+FG DY
Sbjct: 182 VDNIAEIAAAGADMFVAGSAIFGQPDY 208
|
Catalyzes the reversible epimerization of D-ribulose 5-phosphate to D-xylulose 5-phosphate. Serratia marcescens (taxid: 615) EC: 5 EC: . EC: 1 EC: . EC: 3 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| 449439289 | 283 | PREDICTED: ribulose-phosphate 3-epimeras | 1.0 | 0.992 | 0.879 | 1e-141 | |
| 356511994 | 280 | PREDICTED: ribulose-phosphate 3-epimeras | 0.982 | 0.985 | 0.882 | 1e-140 | |
| 224124194 | 286 | predicted protein [Populus trichocarpa] | 0.992 | 0.975 | 0.868 | 1e-138 | |
| 225457361 | 282 | PREDICTED: ribulose-phosphate 3-epimeras | 0.996 | 0.992 | 0.879 | 1e-138 | |
| 2833386 | 285 | RecName: Full=Ribulose-phosphate 3-epime | 1.0 | 0.985 | 0.859 | 1e-138 | |
| 15240250 | 281 | D-ribulose-5-phosphate-3-epimerase [Arab | 0.989 | 0.989 | 0.871 | 1e-137 | |
| 297797095 | 281 | hypothetical protein ARALYDRAFT_919384 [ | 0.989 | 0.989 | 0.875 | 1e-137 | |
| 3264790 | 285 | ribulose-phosphate 3-epimerase transit f | 1.0 | 0.985 | 0.856 | 1e-137 | |
| 2499728 | 280 | RecName: Full=Ribulose-phosphate 3-epime | 0.985 | 0.989 | 0.857 | 1e-136 | |
| 363807408 | 280 | uncharacterized protein LOC100817791 [Gl | 0.982 | 0.985 | 0.854 | 1e-135 |
| >gi|449439289|ref|XP_004137418.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Cucumis sativus] gi|449486996|ref|XP_004157465.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust.
Identities = 249/283 (87%), Positives = 262/283 (92%), Gaps = 2/283 (0%)
Query: 1 MSTGSLCSST--TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDI 58
M+ SLC ST +Q++GF GG QK +QPSSL+ +RRR + +VKASARVDKFSKSDI
Sbjct: 1 MAVASLCQSTMKSQVSGFIGGLTFQKPPNSQPSSLTVSRRRFRNVVKASARVDKFSKSDI 60
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
IVSPSILSANF+KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 61 IVSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 120
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNPATSL
Sbjct: 121 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQIKSLGAKAGVVLNPATSL 180
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
S IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR+C EKGVNPWIEVDGGVGP
Sbjct: 181 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPA 240
Query: 239 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP+AV V
Sbjct: 241 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPEAVPV 283
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356511994|ref|XP_003524706.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 503 bits (1294), Expect = e-140, Method: Compositional matrix adjust.
Identities = 249/282 (88%), Positives = 264/282 (93%), Gaps = 6/282 (2%)
Query: 2 STGSLCSST--TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDII 59
+T SLCSST +QINGF L KT+L+ P SL+F+R++I T VKA++RVDKFSKSDII
Sbjct: 3 ATSSLCSSTLQSQINGFC----LHKTSLSHPRSLTFSRKKISTTVKATSRVDKFSKSDII 58
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD
Sbjct: 59 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 118
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQ+K LGAKAGVVLNPAT LS
Sbjct: 119 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPATPLS 178
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
AIE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR+C EKGVNPWIEVDGGVGP N
Sbjct: 179 AIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRVCAEKGVNPWIEVDGGVGPAN 238
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
AYKVIEAGANALVAGSAVFGAKDYAEAI+GIKTSKRP+AVAV
Sbjct: 239 AYKVIEAGANALVAGSAVFGAKDYAEAIRGIKTSKRPEAVAV 280
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224124194|ref|XP_002330128.1| predicted protein [Populus trichocarpa] gi|222871262|gb|EEF08393.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1282), Expect = e-138, Method: Compositional matrix adjust.
Identities = 244/281 (86%), Positives = 263/281 (93%), Gaps = 2/281 (0%)
Query: 2 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSL-SFTRRRIQTIVKASARVDKFSKSDIIV 60
++ SLCSST QINGF QK L+QP+S+ +FTRR++ T+VKA++RVDKFSKSDIIV
Sbjct: 7 ASASLCSST-QINGFGEALRPQKNRLSQPNSIATFTRRKVHTVVKATSRVDKFSKSDIIV 65
Query: 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV 120
SPSILSANF+KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV
Sbjct: 66 SPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV 125
Query: 121 HLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 180
HLMIVEPEQRVPDFIKAGADIVSVHCEQ++TIHLHRTLN IK LGAKAGVVLNPAT LS
Sbjct: 126 HLMIVEPEQRVPDFIKAGADIVSVHCEQTATIHLHRTLNMIKSLGAKAGVVLNPATPLST 185
Query: 181 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 240
IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKIS+LRRMC+EKGVNPWIEVDGGVGPKNA
Sbjct: 186 IEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISELRRMCVEKGVNPWIEVDGGVGPKNA 245
Query: 241 YKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
YKVIEAGANALVAGSAVFGA DYAEAI+GIK+SKRP+AVAV
Sbjct: 246 YKVIEAGANALVAGSAVFGAPDYAEAIRGIKSSKRPEAVAV 286
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225457361|ref|XP_002284772.1| PREDICTED: ribulose-phosphate 3-epimerase, chloroplastic-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 498 bits (1281), Expect = e-138, Method: Compositional matrix adjust.
Identities = 249/283 (87%), Positives = 262/283 (92%), Gaps = 3/283 (1%)
Query: 1 MSTGSLCSST--TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDI 58
M+T SL SST +QINGF G LQ+++L QP+S +F+RR+ + VKASARVDKFSKSDI
Sbjct: 1 MATASLGSSTLQSQINGF-GVNKLQRSSLFQPTSFTFSRRKFSSTVKASARVDKFSKSDI 59
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL+V ALRPVTDLPL
Sbjct: 60 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLIVGALRPVTDLPL 119
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNPAT L
Sbjct: 120 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPATPL 179
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
S IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR+C EKGVNPWIEVDGGVGP
Sbjct: 180 STIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRICAEKGVNPWIEVDGGVGPA 239
Query: 239 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP AVAV
Sbjct: 240 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPVAVAV 282
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|2833386|sp|Q43157.1|RPE_SPIOL RecName: Full=Ribulose-phosphate 3-epimerase, chloroplastic; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E; Short=RPE; Flags: Precursor gi|1162980|gb|AAC41677.1| ribulose-5-phosphate 3-epimerase [Spinacia oleracea] gi|3264788|gb|AAC24708.1| ribulose-phosphate 3-epimerase [Spinacia oleracea] gi|1587969|prf||2207382A D-ribulose-5-phosphate 3-epimerase | Back alignment and taxonomy information |
|---|
Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust.
Identities = 245/285 (85%), Positives = 262/285 (91%), Gaps = 4/285 (1%)
Query: 1 MSTGSLCSST--TQINGFTGGFMLQK--TNLNQPSSLSFTRRRIQTIVKASARVDKFSKS 56
MS SLC ST +QINGF GG ++K + + P+SL+FTRR++QT+VKA++RVDKFSKS
Sbjct: 1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKS 60
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL
Sbjct: 61 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
PLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T
Sbjct: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGT 180
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC+EKGVNPWIEVDGGV
Sbjct: 181 PLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVT 240
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP+ VAV
Sbjct: 241 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVAV 285
|
Source: Spinacia oleracea Species: Spinacia oleracea Genus: Spinacia Family: Amaranthaceae Order: Caryophyllales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15240250|ref|NP_200949.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|30697525|ref|NP_851240.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|4102703|gb|AAD09954.1| ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|9757862|dbj|BAB08496.1| ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|15027997|gb|AAK76529.1| putative ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|20259209|gb|AAM14320.1| putative ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|332010080|gb|AED97463.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] gi|332010081|gb|AED97464.1| D-ribulose-5-phosphate-3-epimerase [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 495 bits (1274), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/280 (87%), Positives = 256/280 (91%), Gaps = 2/280 (0%)
Query: 2 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVS 61
S SLC S+TQ+NGF G +++ L QP+S SF+RRR IVKAS+RVD+FSKSDIIVS
Sbjct: 4 SAASLCCSSTQVNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDIIVS 61
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH
Sbjct: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
LMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT+NQIK LGAKAGVVLNP T LSAI
Sbjct: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLSAI 181
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
E VLD+VDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC EKGVNPWIEVDGGV P NAY
Sbjct: 182 EYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVTPANAY 241
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
KVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP AVAV
Sbjct: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPAAVAV 281
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297797095|ref|XP_002866432.1| hypothetical protein ARALYDRAFT_919384 [Arabidopsis lyrata subsp. lyrata] gi|297312267|gb|EFH42691.1| hypothetical protein ARALYDRAFT_919384 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 494 bits (1272), Expect = e-137, Method: Compositional matrix adjust.
Identities = 245/280 (87%), Positives = 255/280 (91%), Gaps = 2/280 (0%)
Query: 2 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVS 61
S SLC S+ Q+NGF G +++ L QP+S F+RRR IVKASARVDKFSKSDIIVS
Sbjct: 4 SAASLCCSSAQVNGF--GLRPERSLLYQPTSFFFSRRRSHGIVKASARVDKFSKSDIIVS 61
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH
Sbjct: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
LMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT+NQIK LGAKAGVVLNP T LSAI
Sbjct: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLSAI 181
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
E VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC EKGVNPWIEVDGGV P NAY
Sbjct: 182 EYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVTPANAY 241
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
KVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP+AVAV
Sbjct: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEAVAV 281
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|3264790|gb|AAC24709.1| ribulose-phosphate 3-epimerase transit form [Expression vector pFL505] | Back alignment and taxonomy information |
|---|
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 244/285 (85%), Positives = 261/285 (91%), Gaps = 4/285 (1%)
Query: 1 MSTGSLCSST--TQINGFTGGFMLQK--TNLNQPSSLSFTRRRIQTIVKASARVDKFSKS 56
M SLC ST +QINGF GG ++K + + P+SL+FTRR++QT+VKA++RVDKFSKS
Sbjct: 1 MGAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKS 60
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL
Sbjct: 61 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
PLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T
Sbjct: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGT 180
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC+EKGVNPWIEVDGGV
Sbjct: 181 PLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVT 240
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP+ VAV
Sbjct: 241 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVAV 285
|
Source: Expression vector pFL505 Species: Expression vector pFL505 Genus: N/A Family: N/A Order: N/A Class: N/A Phylum: N/A Superkingdom: |
| >gi|2499728|sp|Q43843.1|RPE_SOLTU RecName: Full=Ribulose-phosphate 3-epimerase, chloroplastic; AltName: Full=Pentose-5-phosphate 3-epimerase; Short=PPE; AltName: Full=R5P3E; Short=RPE; Flags: Precursor gi|902739|emb|CAA90426.1| pentose-5-phosphate-3-epimerase [Solanum tuberosum] | Back alignment and taxonomy information |
|---|
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 240/280 (85%), Positives = 260/280 (92%), Gaps = 3/280 (1%)
Query: 5 SLCSST---TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVS 61
SL SST +QI+GF G LQK + + P+SL+FTRRRIQT+V AS+RVDKFSKSDIIVS
Sbjct: 1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVS 60
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
PSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVH
Sbjct: 61 PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVH 120
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
LMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AI
Sbjct: 121 LMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI 180
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
E VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NPWIEVDGGVGPKNAY
Sbjct: 181 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAY 240
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
KVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+AVAV
Sbjct: 241 KVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPEAVAV 280
|
Source: Solanum tuberosum Species: Solanum tuberosum Genus: Solanum Family: Solanaceae Order: Solanales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|363807408|ref|NP_001242382.1| uncharacterized protein LOC100817791 [Glycine max] gi|255647180|gb|ACU24058.1| unknown [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 488 bits (1255), Expect = e-135, Method: Compositional matrix adjust.
Identities = 241/282 (85%), Positives = 257/282 (91%), Gaps = 6/282 (2%)
Query: 2 STGSLCSST--TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDII 59
+T SLCSST +QINGF L KT+L+ SL+F+RR+I T VK ++RVDKFSKSDII
Sbjct: 3 ATSSLCSSTLQSQINGF----FLHKTSLSHTPSLTFSRRKISTTVKTTSRVDKFSKSDII 58
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
VSPSILSANF+KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL
Sbjct: 59 VSPSILSANFSKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLG 118
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQ+K LGAKAGVVLNP T LS
Sbjct: 119 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTVNQVKSLGAKAGVVLNPGTPLS 178
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
AIE +LDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR+C EKGVNPWIEVDGGVGP N
Sbjct: 179 AIEYILDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRLCAEKGVNPWIEVDGGVGPAN 238
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
AYKVIEAGANALVAG AVFGAKDYAE I+GIKTSKRP+ VAV
Sbjct: 239 AYKVIEAGANALVAGFAVFGAKDYAETIRGIKTSKRPEVVAV 280
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 281 | ||||||
| UNIPROTKB|Q43157 | 285 | RPE "Ribulose-phosphate 3-epim | 1.0 | 0.985 | 0.859 | 3.4e-125 | |
| TAIR|locus:2163228 | 281 | RPE "D-ribulose-5-phosphate-3- | 0.989 | 0.989 | 0.871 | 4.9e-124 | |
| UNIPROTKB|Q43843 | 280 | Q43843 "Ribulose-phosphate 3-e | 0.985 | 0.989 | 0.857 | 1.3e-123 | |
| TIGR_CMR|GSU_3374 | 221 | GSU_3374 "ribulose-phosphate 3 | 0.765 | 0.972 | 0.587 | 4.2e-63 | |
| TIGR_CMR|BA_3998 | 214 | BA_3998 "ribulose-phosphate 3- | 0.754 | 0.990 | 0.598 | 8.8e-63 | |
| TIGR_CMR|APH_0002 | 236 | APH_0002 "ribulose-phosphate 3 | 0.758 | 0.902 | 0.483 | 3.1e-51 | |
| TIGR_CMR|ECH_0082 | 228 | ECH_0082 "ribulose-phosphate 3 | 0.786 | 0.969 | 0.491 | 6.5e-51 | |
| TIGR_CMR|SPO_0779 | 229 | SPO_0779 "ribulose-phosphate 3 | 0.697 | 0.855 | 0.507 | 1.2e-49 | |
| UNIPROTKB|Q9KNV5 | 236 | VC_2625 "Ribulose-phosphate 3- | 0.758 | 0.902 | 0.481 | 2.5e-49 | |
| TIGR_CMR|VC_2625 | 236 | VC_2625 "ribulose-phosphate 3- | 0.758 | 0.902 | 0.481 | 2.5e-49 |
| UNIPROTKB|Q43157 RPE "Ribulose-phosphate 3-epimerase, chloroplastic" [Spinacia oleracea (taxid:3562)] | Back alignment and assigned GO terms |
|---|
Score = 1230 (438.0 bits), Expect = 3.4e-125, P = 3.4e-125
Identities = 245/285 (85%), Positives = 262/285 (91%)
Query: 1 MSTGSLCSST--TQINGFTGGFMLQKT--NLNQPSSLSFTRRRIQTIVKASARVDKFSKS 56
MS SLC ST +QINGF GG ++K + + P+SL+FTRR++QT+VKA++RVDKFSKS
Sbjct: 1 MSAASLCQSTLQSQINGFCGGLNIRKLQPSTSSPNSLTFTRRKVQTLVKATSRVDKFSKS 60
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL
Sbjct: 61 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 120
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
PLDVHLMIVEPEQRVPDFIKAGADIVSVHCE +STIHLHRT+NQIK LGAKAGVVLNP T
Sbjct: 121 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCELASTIHLHRTVNQIKSLGAKAGVVLNPGT 180
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
LS IE VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC+EKGVNPWIEVDGGV
Sbjct: 181 PLSTIEYVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCVEKGVNPWIEVDGGVT 240
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
P NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP+ VAV
Sbjct: 241 PANAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPEPVAV 285
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| TAIR|locus:2163228 RPE "D-ribulose-5-phosphate-3-epimerase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1219 (434.2 bits), Expect = 4.9e-124, P = 4.9e-124
Identities = 244/280 (87%), Positives = 256/280 (91%)
Query: 2 STGSLCSSTTQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVS 61
S SLC S+TQ+NGF G +++ L QP+S SF+RRR IVKAS+RVD+FSKSDIIVS
Sbjct: 4 SAASLCCSSTQVNGF--GLRPERSLLYQPTSFSFSRRRTHGIVKASSRVDRFSKSDIIVS 61
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH
Sbjct: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
LMIVEPEQRVPDFIKAGADIVSVHCEQ STIHLHRT+NQIK LGAKAGVVLNP T LSAI
Sbjct: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQQSTIHLHRTVNQIKSLGAKAGVVLNPGTPLSAI 181
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
E VLD+VDLVLIMSVNPGFGGQSFIESQVKKISDLR+MC EKGVNPWIEVDGGV P NAY
Sbjct: 182 EYVLDMVDLVLIMSVNPGFGGQSFIESQVKKISDLRKMCAEKGVNPWIEVDGGVTPANAY 241
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
KVIEAGANALVAGSAVFGAKDYAEAIKGIK SKRP AVAV
Sbjct: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKASKRPAAVAV 281
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| UNIPROTKB|Q43843 Q43843 "Ribulose-phosphate 3-epimerase, chloroplastic" [Solanum tuberosum (taxid:4113)] | Back alignment and assigned GO terms |
|---|
Score = 1215 (432.8 bits), Expect = 1.3e-123, P = 1.3e-123
Identities = 240/280 (85%), Positives = 260/280 (92%)
Query: 5 SLCSST---TQINGFTGGFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVS 61
SL SST +QI+GF G LQK + + P+SL+FTRRRIQT+V AS+RVDKFSKSDIIVS
Sbjct: 1 SLGSSTLLQSQISGFGGSQKLQKISFSNPNSLTFTRRRIQTVVNASSRVDKFSKSDIIVS 60
Query: 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121
PSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVVD+LRP+TDLPLDVH
Sbjct: 61 PSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVH 120
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
LMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAKAGVVLNP T L+AI
Sbjct: 121 LMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAI 180
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
E VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NPWIEVDGGVGPKNAY
Sbjct: 181 EYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNPWIEVDGGVGPKNAY 240
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
KVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+AVAV
Sbjct: 241 KVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPEAVAV 280
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| TIGR_CMR|GSU_3374 GSU_3374 "ribulose-phosphate 3-epimerase" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
Identities = 128/218 (58%), Positives = 165/218 (75%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PSILSA+F++LG++V+AV AG D+IHVDVMDG FVPNITIGPLVV+A+R VT+LPLD
Sbjct: 4 IAPSILSADFSRLGDEVRAVAAAGADYIHVDVMDGHFVPNITIGPLVVEAVRRVTELPLD 63
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLMI P++ +PDF AG+DI+ VH E S+ HLHRT+ IK LG KAGV LNPAT L+
Sbjct: 64 VHLMIEHPDRYIPDFAAAGSDIIVVHAEAST--HLHRTIQLIKSLGKKAGVSLNPATPLN 121
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
++ VL+ +DLVL+M+VNPGFGGQSFIE+ + KI LR M +G +EVDGGV N
Sbjct: 122 CLDYVLEDLDLVLLMTVNPGFGGQSFIEACIPKIQSLRAMLDRRGCEAELEVDGGVKIDN 181
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT-SKRP 276
++ AGA+ VAGSA+FG+ DY IK +K +K P
Sbjct: 182 IARIAHAGADVFVAGSAIFGSPDYEATIKELKRRAKEP 219
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| TIGR_CMR|BA_3998 BA_3998 "ribulose-phosphate 3-epimerase" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 641 (230.7 bits), Expect = 8.8e-63, P = 8.8e-63
Identities = 128/214 (59%), Positives = 159/214 (74%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
I ++PSILSA+F+KLGE++K VE G D+IHVDVMDG FVPNITIGPL+V+A+RP+T LP
Sbjct: 2 IKIAPSILSADFSKLGEEIKDVEKGGADYIHVDVMDGHFVPNITIGPLIVEAIRPITSLP 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLMI P+ +P F KAGADI++VH E HLHRT+ IK G KAGVVLNP T
Sbjct: 62 LDVHLMIENPDNYIPTFAKAGADIITVHVEACP--HLHRTIQLIKSHGIKAGVVLNPHTP 119
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+S IE VL+ +D+VL+M+VNPGFGGQ FI S + KI + M E+ + IEVDGGV
Sbjct: 120 VSVIEHVLEDIDMVLLMTVNPGFGGQKFIHSVLPKIKQVAEMVKERNLEVEIEVDGGVNA 179
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+ A +EAGAN LVAGSAV+ KD EAI+ I+
Sbjct: 180 ETARLCVEAGANVLVAGSAVYNQKDRGEAIRVIR 213
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| TIGR_CMR|APH_0002 APH_0002 "ribulose-phosphate 3-epimerase" [Anaplasma phagocytophilum HZ (taxid:212042)] | Back alignment and assigned GO terms |
|---|
Score = 532 (192.3 bits), Expect = 3.1e-51, P = 3.1e-51
Identities = 104/215 (48%), Positives = 149/215 (69%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
++VS S+LSA+F+ L E++ AV AG DW+H+DVMDG FVP++T+GP+V+ +R T++
Sbjct: 23 VVVSASMLSADFSNLREEIAAVSTAGADWLHIDVMDGCFVPSLTMGPVVISGIRKCTNMF 82
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLMI P + + AGAD+++VH E S +HL R + QIK G K GV + P T
Sbjct: 83 LDVHLMINRPGDHLKSVVDAGADMITVHAE--SEVHLCRLIKQIKLYGKKVGVSIVPKTH 140
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
S +E ++ +D+VL+MSV+PGFGGQ+F+E Q+KKI +R+M E I VDGGV
Sbjct: 141 HSVLEYIIHDLDVVLVMSVDPGFGGQAFLEPQLKKIEHIRKMIEESSSTAKIAVDGGVST 200
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
NA VIEAGAN LV G+A+F A D ++ ++ +K+
Sbjct: 201 DNARAVIEAGANILVVGTALFAADDMSKVVRTLKS 235
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| TIGR_CMR|ECH_0082 ECH_0082 "ribulose-phosphate 3-epimerase" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)] | Back alignment and assigned GO terms |
|---|
Score = 529 (191.3 bits), Expect = 6.5e-51, P = 6.5e-51
Identities = 110/224 (49%), Positives = 153/224 (68%)
Query: 51 DKFSKSDII-VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDA 109
+ F++ ++ VS SILSA+FA LG+ V+ + AG D+IHVDVMDG FVPNITIGP+VV A
Sbjct: 6 NSFNRGKVVEVSSSILSADFANLGKSVEMLTDAGVDYIHVDVMDGNFVPNITIGPVVVSA 65
Query: 110 LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG 169
++ T +P DVHLMI P + F+ AGAD++++H E S IHL R + +IK AG
Sbjct: 66 IKKYTTIPFDVHLMINSPGNYIEAFVDAGADMITIHAE--SDIHLDRIIQKIKSYKKSAG 123
Query: 170 VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229
+ L P + + +E ++ +DLVLIM+VNPGFGGQ FI SQ+ KIS +R + + + I
Sbjct: 124 LSLVPTSHYNILEYIIFELDLVLIMTVNPGFGGQQFITSQLDKISCVRNLIEKYSLKTKI 183
Query: 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
VDGGV KNA VIEAGA+ LV GSA+F A + + ++ +K+S
Sbjct: 184 AVDGGVNIKNAKSVIEAGADILVVGSAIFNANNMLDYVQQLKSS 227
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| TIGR_CMR|SPO_0779 SPO_0779 "ribulose-phosphate 3-epimerase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] | Back alignment and assigned GO terms |
|---|
Score = 517 (187.1 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 102/201 (50%), Positives = 137/201 (68%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
I ++PSILSA+FA G +++A+E G DW+HVDVMDG FVPN+T GP+ V A RP
Sbjct: 7 IKIAPSILSADFANFGAEIRAIEAEGADWVHVDVMDGHFVPNLTFGPMAVKAFRPYVKTV 66
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLMI + + + AGAD+++ H E H+HRTL I+ G KAGV LNP T
Sbjct: 67 MDVHLMIAPVDPYIDAYADAGADVLTAHIEAGP--HIHRTLQAIRGAGMKAGVALNPGTP 124
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
++ +LD+ DL+ +M+VNPGFGGQ FI+ KI+ LR+M ++ V+ IE+DGGV P
Sbjct: 125 AESVAHLLDLTDLICVMTVNPGFGGQKFID-MTAKIARLRQMIGDRPVH--IEIDGGVDP 181
Query: 238 KNAYKVIEAGANALVAGSAVF 258
K A V +AGA+ LVAGSAVF
Sbjct: 182 KTAPLVAQAGADVLVAGSAVF 202
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| UNIPROTKB|Q9KNV5 VC_2625 "Ribulose-phosphate 3-epimerase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 104/216 (48%), Positives = 144/216 (66%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TD 115
D +++PSILSA+FA+LGE V V AG D +H DVMD +VPN+T G + ALR
Sbjct: 15 DFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGIT 74
Query: 116 LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
P+DVHLM+ ++ +PDF KAGA +++ H E S H+ RTL IK+ G +AGVVLNPA
Sbjct: 75 APIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE--HVDRTLQLIKECGCQAGVVLNPA 132
Query: 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
T L ++ ++D VDL+L+MSVNPGFGGQSFI + K+ +R + G +E+DGGV
Sbjct: 133 TPLHHLDYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRERIKQSGRPIRLEIDGGV 192
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+N ++ EAGA+ VAGSA+FG DY I+ ++
Sbjct: 193 KVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQMR 228
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| TIGR_CMR|VC_2625 VC_2625 "ribulose-phosphate 3-epimerase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] | Back alignment and assigned GO terms |
|---|
Score = 514 (186.0 bits), Expect = 2.5e-49, P = 2.5e-49
Identities = 104/216 (48%), Positives = 144/216 (66%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TD 115
D +++PSILSA+FA+LGE V V AG D +H DVMD +VPN+T G + ALR
Sbjct: 15 DFLIAPSILSADFARLGEDVAKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGIT 74
Query: 116 LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
P+DVHLM+ ++ +PDF KAGA +++ H E S H+ RTL IK+ G +AGVVLNPA
Sbjct: 75 APIDVHLMVKPVDRIIPDFAKAGASMITFHVEASE--HVDRTLQLIKECGCQAGVVLNPA 132
Query: 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
T L ++ ++D VDL+L+MSVNPGFGGQSFI + K+ +R + G +E+DGGV
Sbjct: 133 TPLHHLDYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRERIKQSGRPIRLEIDGGV 192
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+N ++ EAGA+ VAGSA+FG DY I+ ++
Sbjct: 193 KVENIREIAEAGADMFVAGSAIFGQPDYQAVIEQMR 228
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q43843 | RPE_SOLTU | 5, ., 1, ., 3, ., 1 | 0.8571 | 0.9857 | 0.9892 | N/A | no |
| O34557 | RPE_BACSU | 5, ., 1, ., 3, ., 1 | 0.6284 | 0.7651 | 0.9907 | yes | no |
| Q43157 | RPE_SPIOL | 5, ., 1, ., 3, ., 1 | 0.8596 | 1.0 | 0.9859 | N/A | no |
| Q9ZTP5 | RPE_ORYSJ | 5, ., 1, ., 3, ., 1 | 0.8866 | 0.8790 | 0.9014 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
| Prediction Level | EC number | Confidence of Prediction |
| 3rd Layer | 5.1.3.1 | 0.994 |
| 3rd Layer | 5.1.3 | 0.998 |
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | estExt_Genewise1_v1.C_1290095 | ribulose-phosphate 3-epimerase (EC-5.1.3.1) (286 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
 | eugene3.00021349 | SubName- Full=Putative uncharacterized protein; (745 aa) | • | • | • | • | • | 0.971 | |||
 | estExt_Genewise1_v1.C_LG_XIV0740 | transketolase (EC-2.2.1.1) (635 aa) | • | • | • | • | 0.970 | ||||
 | fgenesh4_pm.C_LG_X000906 | transketolase (EC-2.2.1.1) (656 aa) | • | • | • | 0.964 | |||||
 | gw1.XIII.1456.1 | annotation not avaliable (242 aa) | • | • | • | 0.936 | |||||
 | gw1.70.218.1 | hypothetical protein (264 aa) | • | • | • | 0.931 | |||||
 | estExt_Genewise1_v1.C_LG_III2205 | SubName- Full=Putative uncharacterized protein; (405 aa) | • | • | • | • | 0.930 | ||||
 | estExt_Genewise1_v1.C_290458 | phosphoribulokinase (EC-2.7.1.19) (405 aa) | • | • | • | • | 0.929 | ||||
 | estExt_Genewise1_v1.C_LG_VIII0741 | SubName- Full=Putative uncharacterized protein; (264 aa) | • | • | • | 0.927 | |||||
 | grail3.0176001401 | ribose-5-phosphate isomerase (EC-5.3.1.6) (271 aa) | • | • | • | 0.926 | |||||
 | eugene3.00101083 | SubName- Full=Putative uncharacterized protein; (265 aa) | • | • | • | 0.924 | |||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 281 | |||
| PLN02334 | 229 | PLN02334, PLN02334, ribulose-phosphate 3-epimerase | 1e-143 | |
| PRK05581 | 220 | PRK05581, PRK05581, ribulose-phosphate 3-epimerase | 1e-129 | |
| cd00429 | 211 | cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RP | 1e-126 | |
| COG0036 | 220 | COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Car | 1e-115 | |
| TIGR01163 | 210 | TIGR01163, rpe, ribulose-phosphate 3-epimerase | 1e-114 | |
| pfam00834 | 201 | pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 ep | 1e-114 | |
| PTZ00170 | 228 | PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epime | 7e-73 | |
| PRK08745 | 223 | PRK08745, PRK08745, ribulose-phosphate 3-epimerase | 3e-71 | |
| PRK08883 | 220 | PRK08883, PRK08883, ribulose-phosphate 3-epimerase | 9e-69 | |
| PRK09722 | 229 | PRK09722, PRK09722, allulose-6-phosphate 3-epimera | 9e-64 | |
| PRK08005 | 210 | PRK08005, PRK08005, epimerase; Validated | 2e-28 | |
| PRK14057 | 254 | PRK14057, PRK14057, epimerase; Provisional | 1e-20 | |
| PRK08091 | 228 | PRK08091, PRK08091, ribulose-phosphate 3-epimerase | 1e-20 | |
| cd04722 | 200 | cd04722, TIM_phosphate_binding, TIM barrel protein | 1e-17 | |
| TIGR03128 | 206 | TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synth | 8e-05 | |
| COG0269 | 217 | COG0269, SgbH, 3-hexulose-6-phosphate synthase and | 1e-04 | |
| PRK00043 | 212 | PRK00043, thiE, thiamine-phosphate pyrophosphoryla | 5e-04 | |
| TIGR01740 | 214 | TIGR01740, pyrF, orotidine 5'-phosphate decarboxyl | 5e-04 | |
| cd00564 | 196 | cd00564, TMP_TenI, Thiamine monophosphate synthase | 0.001 | |
| cd04726 | 202 | cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate | 0.002 | |
| COG0352 | 211 | COG0352, ThiE, Thiamine monophosphate synthase [Co | 0.003 |
| >gnl|CDD|215192 PLN02334, PLN02334, ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Score = 400 bits (1030), Expect = e-143
Identities = 144/233 (61%), Positives = 167/233 (71%), Gaps = 6/233 (2%)
Query: 51 DKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL 110
DKFSK+D I++PSILSA+FA L E+ K V AG DW+HVDVMDG FVPN+TIGP VV AL
Sbjct: 1 DKFSKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKAL 60
Query: 111 RPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 170
R TD PLD HLM+ PE VPDF KAGA I + H EQ+STIHLHR + QIK G KAGV
Sbjct: 61 RKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQASTIHLHRLIQQIKSAGMKAGV 120
Query: 171 VLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228
VLNP T + A+E V++ VD+VL+MSV PGFGGQSFI S + K+ LR+ E
Sbjct: 121 VLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIPSMMDKVRALRKKYPEL----D 176
Query: 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
IEVDGGVGP K EAGAN +VAGSAVFGA DYAE I G++ S AVAV
Sbjct: 177 IEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV 229
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Length = 229 |
| >gnl|CDD|235515 PRK05581, PRK05581, ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Score = 364 bits (937), Expect = e-129
Identities = 131/219 (59%), Positives = 167/219 (76%), Gaps = 2/219 (0%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
++++PSILSA+FA+LGE+VKAVE AG DWIHVDVMDG FVPN+TIGP VV+A+R VT LP
Sbjct: 4 VLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLP 63
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLM+ P++ VPDF KAGADI++ H E ++ H+HR L IK G KAG+VLNPAT
Sbjct: 64 LDVHLMVENPDRYVPDFAKAGADIITFHVE--ASEHIHRLLQLIKSAGIKAGLVLNPATP 121
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L +E VLD++DLVL+MSVNPGFGGQ FI ++KI +LR++ E+G++ IEVDGG+
Sbjct: 122 LEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINA 181
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276
N + EAGA+ VAGSAVFGA DY EAI ++
Sbjct: 182 DNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAELAA 220
|
Length = 220 |
| >gnl|CDD|238244 cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Score = 356 bits (916), Expect = e-126
Identities = 126/213 (59%), Positives = 157/213 (73%), Gaps = 2/213 (0%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
++PSILSA+FA LGE++K +E AG DWIH+DVMDG FVPN+T GP VV ALR TDLPL
Sbjct: 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPL 60
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
DVHLM+ PE+ + F KAGADI++ H E +T HLHRT+ IK+LG KAGV LNP T +
Sbjct: 61 DVHLMVENPERYIEAFAKAGADIITFHAE--ATDHLHRTIQLIKELGMKAGVALNPGTPV 118
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
+E LD VDLVL+MSVNPGFGGQ FI ++KI LR + E +N IEVDGG+ +
Sbjct: 119 EVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVDGGINLE 178
Query: 239 NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+ EAGA+ LVAGSA+FG+ DYAEAIK ++
Sbjct: 179 TIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. Length = 211 |
| >gnl|CDD|223114 COG0036, Rpe, Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 330 bits (848), Expect = e-115
Identities = 124/217 (57%), Positives = 161/217 (74%), Gaps = 3/217 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ ++PSILSA+FA+LGE++KA+E AG D IH+DVMDG FVPNIT GP VV ALR +TDLP
Sbjct: 4 MKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLP 63
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLM+ P++ + F KAGADI++ H E +T H+HRT+ IK+LG KAG+VLNPAT
Sbjct: 64 LDVHLMVENPDRYIEAFAKAGADIITFHAE--ATEHIHRTIQLIKELGVKAGLVLNPATP 121
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L A+E VLD VDLVL+MSVNPGFGGQ FI ++KI +LR M E+ + IEVDGG+
Sbjct: 122 LEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRELRAMIDERL-DILIEVDGGINL 180
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274
+ ++ AGA+ VAGSA+FGA DY I+ ++
Sbjct: 181 ETIKQLAAAGADVFVAGSALFGADDYKATIRELRGEL 217
|
Length = 220 |
| >gnl|CDD|130231 TIGR01163, rpe, ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Score = 327 bits (841), Expect = e-114
Identities = 131/212 (61%), Positives = 167/212 (78%), Gaps = 2/212 (0%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PSILSA+FA+LGE+VKAVE AG DWIHVDVMDG FVPN+T GP V++ALR TDLP+D
Sbjct: 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPID 60
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
VHLM+ P++ + DF +AGADI++VH E ++ H+HR L IKDLGAKAG+VLNPAT L
Sbjct: 61 VHLMVENPDRYIEDFAEAGADIITVHPE--ASEHIHRLLQLIKDLGAKAGIVLNPATPLE 118
Query: 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+E VL VDLVL+MSVNPGFGGQ FI ++KI ++R+M E G++ IEVDGGV N
Sbjct: 119 FLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKMIDENGLSILIEVDGGVNDDN 178
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
A ++ EAGA+ LVAGSA+FGA DY E I+ ++
Sbjct: 179 ARELAEAGADILVAGSAIFGADDYKEVIRSLR 210
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants [Energy metabolism, Pentose phosphate pathway]. Length = 210 |
| >gnl|CDD|216142 pfam00834, Ribul_P_3_epim, Ribulose-phosphate 3 epimerase family | Back alignment and domain information |
|---|
Score = 326 bits (837), Expect = e-114
Identities = 131/203 (64%), Positives = 164/203 (80%), Gaps = 2/203 (0%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
++PS+LSA+FA LGE++KAVE AG DW+HVDVMDG FVPN+TIGPLVV+ALRP+T+LPL
Sbjct: 1 KIAPSLLSADFAHLGEEIKAVENAGADWLHVDVMDGHFVPNLTIGPLVVEALRPLTELPL 60
Query: 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178
DVHLM+ EP++ +PDF +AGADI+S H E ++ H HRT+ IK+ GAKAG+VLNPAT L
Sbjct: 61 DVHLMVEEPDRIIPDFAEAGADIISFHAE--ASDHPHRTIQLIKEAGAKAGLVLNPATPL 118
Query: 179 SAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238
AIE +LD +DLVL+MSVNPGFGGQSFI S + KI +R+M E G++ IEVDGGV
Sbjct: 119 DAIEYLLDDLDLVLLMSVNPGFGGQSFIPSVLPKIRKVRKMIDEGGLDTLIEVDGGVNLD 178
Query: 239 NAYKVIEAGANALVAGSAVFGAK 261
N ++ EAGA+ LVAGSAVFGA
Sbjct: 179 NIPQIAEAGADVLVAGSAVFGAP 201
|
This enzyme catalyzes the conversion of D-ribulose 5-phosphate into D-xylulose 5-phosphate. Length = 201 |
| >gnl|CDD|240303 PTZ00170, PTZ00170, D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 7e-73
Identities = 91/218 (41%), Positives = 137/218 (62%), Gaps = 8/218 (3%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP- 117
I++PSIL+A+F+KL ++ + V G DW+HVDVMDG FVPN++ GP VV +LR
Sbjct: 8 IIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTF 67
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LD HLM+ PE+ V DF KAGA + H E + +I++ G K GV + P T
Sbjct: 68 LDCHLMVSNPEKWVDDFAKAGASQFTFHIEATEDDPK-AVARKIREAGMKVGVAIKPKTP 126
Query: 178 LSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
+ + ++D +VD+VL+M+V PGFGGQSF+ + K+ +LR+ + + I+VDGG+
Sbjct: 127 VEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKVRELRK----RYPHLNIQVDGGI 182
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ +AGAN +VAGS++F AKD +AI+ ++ S
Sbjct: 183 NLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRES 220
|
Length = 228 |
| >gnl|CDD|136958 PRK08745, PRK08745, ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 218 bits (557), Expect = 3e-71
Identities = 111/220 (50%), Positives = 145/220 (65%), Gaps = 5/220 (2%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-T 114
++PSILSA+FA+LGE+V V AG DW+H DVMD +VPN+TIGP+V ALR
Sbjct: 2 QPTAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGI 61
Query: 115 DLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
P+DVHLM VEP R VPDF AGA +S H E S H+HRT+ IK G +AG+VLN
Sbjct: 62 TAPIDVHLM-VEPVDRIVPDFADAGATTISFHPEASR--HVHRTIQLIKSHGCQAGLVLN 118
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233
PAT + ++ VL +DLVL+MSVNPGFGGQ+FI S + K+ +R+ G +E+DG
Sbjct: 119 PATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDG 178
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
GV N + AGA+ VAGSA+F A DYA+ I ++ +
Sbjct: 179 GVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAA 218
|
Length = 223 |
| >gnl|CDD|181575 PRK08883, PRK08883, ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 212 bits (540), Expect = 9e-69
Identities = 106/215 (49%), Positives = 145/215 (67%), Gaps = 3/215 (1%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLP 117
+++PSILSA+FA+LGE V+ V AG D +H DVMD +VPN+T G + ALR P
Sbjct: 1 LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAP 60
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
+DVHLM+ ++ +PDF KAGA +++ H E S H+ RTL IK+ G +AGVVLNPAT
Sbjct: 61 IDVHLMVKPVDRIIPDFAKAGASMITFHVEASE--HVDRTLQLIKEHGCQAGVVLNPATP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
L +E ++D VDL+L+MSVNPGFGGQSFI + K+ +R+M E G + +E+DGGV
Sbjct: 119 LHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEIDGGVKV 178
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
N ++ EAGA+ VAGSA+FG DY I ++
Sbjct: 179 DNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRA 213
|
Length = 220 |
| >gnl|CDD|236616 PRK09722, PRK09722, allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Score = 199 bits (508), Expect = 9e-64
Identities = 72/206 (34%), Positives = 124/206 (60%), Gaps = 3/206 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ +SPS++ + K EQ++ + + D+ H+D+MDG FVPN+T+ P V ++ + P
Sbjct: 3 MKISPSLMCMDLLKFKEQIEFLN-SKADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKP 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LDVHLM+ +P+ + AGAD +++H E + R +++I+ G K G+VLNP T
Sbjct: 62 LDVHLMVTDPQDYIDQLADAGADFITLHPETING-QAFRLIDEIRRAGMKVGLVLNPETP 120
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ +I+ + ++D + +M+V+PGF GQ FI + KI++L+ + G+ IEVDG
Sbjct: 121 VESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQ 180
Query: 238 KNAYKVIEAGANALVAG-SAVFGAKD 262
K K++EAGA+ + G S +F +
Sbjct: 181 KTYEKLMEAGADVFIVGTSGLFNLDE 206
|
Length = 229 |
| >gnl|CDD|169179 PRK08005, PRK08005, epimerase; Validated | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 2e-28
Identities = 67/208 (32%), Positives = 103/208 (49%), Gaps = 10/208 (4%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+I+ PS+ SA+ + E + A+ A +H+D+ D F+ NIT G + A+ T P
Sbjct: 1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHP 60
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
L HLM+ P++ +P + +H E S + L I+ +GAKAG+ LNPAT
Sbjct: 61 LSFHLMVSSPQRWLPWLAAIRPGWIFIHAE--SVQNPSEILADIRAIGAKAGLALNPATP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE--VDGGV 235
L + +D ++IM+ P GQ FI + +K+S R P E DGG+
Sbjct: 119 LLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSREHF------PAAECWADGGI 172
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDY 263
+ A + AGA LV G A+F +Y
Sbjct: 173 TLRAARLLAAAGAQHLVIGRALFTTANY 200
|
Length = 210 |
| >gnl|CDD|172549 PRK14057, PRK14057, epimerase; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (218), Expect = 1e-20
Identities = 61/208 (29%), Positives = 106/208 (50%), Gaps = 13/208 (6%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL+ + L ++ +E +H+D+MDG+F P T+GP V L P T + D
Sbjct: 22 LSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQL-PQTFIK-D 79
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK---------DLGAKAGV 170
VHLM+ + +KAGA +++ E IHLH TL+ + ++ G+
Sbjct: 80 VHLMVADQWTAAQACVKAGAHCITLQAE--GDIHLHHTLSWLGQQTVPVIGGEMPVIRGI 137
Query: 171 VLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
L PAT L I +L V+++ +++VNPG+G + ++++ L + +K I
Sbjct: 138 SLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIV 197
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVF 258
+DG + +I G + +V+GSA+F
Sbjct: 198 IDGSLTQDQLPSLIAQGIDRVVSGSALF 225
|
Length = 254 |
| >gnl|CDD|169215 PRK08091, PRK08091, ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Score = 87.2 bits (216), Expect = 1e-20
Identities = 57/216 (26%), Positives = 106/216 (49%), Gaps = 6/216 (2%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
+S IL++N+ K E + + +H D+ DG+F P T+G + + P D
Sbjct: 15 ISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQF-PTHCFK-D 72
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA--GVVLNPATS 177
VHLM+ + + + AGADIV++ EQ T L T+ + G+ L P T
Sbjct: 73 VHLMVRDQFEVAKACVAAGADIVTLQVEQ--THDLALTIEWLAKQKTTVLIGLCLCPETP 130
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+S +E LD +DL+ I++++P G ++ + + ++ + + V I +DG +
Sbjct: 131 ISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTL 190
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ A + + + +V+GSA+F + +K K+S
Sbjct: 191 ELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSS 226
|
Length = 228 |
| >gnl|CDD|240073 cd04722, TIM_phosphate_binding, TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 1e-17
Identities = 51/205 (24%), Positives = 83/205 (40%), Gaps = 14/205 (6%)
Query: 60 VSPSILSANFAK-LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
V ++L+ + E KA AG D I V T V+ + TDLPL
Sbjct: 1 VILALLAGGPSGDPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPL 60
Query: 119 DVHLMIVEPEQRVPD----FIKAGADIVSVHCEQSSTI-HLHRTLNQIKD--LGAKAGVV 171
V L I + V AGAD V +H + ++++ K V
Sbjct: 61 GVQLAINDAAAAVDIAAAAARAAGADGVEIHGAVGYLAREDLELIRELREAVPDVKVVVK 120
Query: 172 LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231
L+P L+A VD V + + G GG+ + I+DL + ++G +
Sbjct: 121 LSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVP-----IADLLLILAKRGSKVPVIA 175
Query: 232 DGGVG-PKNAYKVIEAGANALVAGS 255
GG+ P++A + + GA+ ++ GS
Sbjct: 176 GGGINDPEDAAEALALGADGVIVGS 200
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. Length = 200 |
| >gnl|CDD|132172 TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 8e-05
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
Query: 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
DL+ + L+ + V GG+ VI+ G + ++ G A+ A D AEA + I+
Sbjct: 146 FEDLQTI-LKLVKEARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIR 203
|
Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. Length = 206 |
| >gnl|CDD|223347 COG0269, SgbH, 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 22/72 (30%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261
G+S+ E ++KI L + + + V GG+ P++ GA+ ++ G A+ GAK
Sbjct: 146 GKSWGEDDLEKIKKLSDLGAK------VAVAGGITPEDIPLFKGIGADIVIVGRAITGAK 199
Query: 262 DYAEAIKGIKTS 273
D AEA + K
Sbjct: 200 DPAEAARKFKEE 211
|
Length = 217 |
| >gnl|CDD|234590 PRK00043, thiE, thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 5e-04
Identities = 16/36 (44%), Positives = 25/36 (69%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 268
GG+ P+NA +V+EAGA+ + SA+ GA+D A +
Sbjct: 167 GGITPENAPEVLEAGADGVAVVSAITGAEDPEAAAR 202
|
Length = 212 |
| >gnl|CDD|233555 TIGR01740, pyrF, orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 5e-04
Identities = 31/147 (21%), Positives = 57/147 (38%), Gaps = 15/147 (10%)
Query: 135 IKAGADIVSVH-CEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192
IK GAD+V+VH ++ ++ G A L TS+ + D ++ V+
Sbjct: 73 IKLGADMVNVHGVAGKESVEAAKEAASEFGRRGLLAVAEL---TSMGSEAYGEDTMEAVI 129
Query: 193 IMSVN------PGFGGQSFIESQVKKI-SDLRRMCLEKGVNPWIEV-DGGVGPKNAYKVI 244
+ G + +++K D + G+ + D
Sbjct: 130 EYAKEAKEFGLDGPVCSAEEAKEIRKATGDFLILT--PGIRLDSKDADDQQRVVTLEDAK 187
Query: 245 EAGANALVAGSAVFGAKDYAEAIKGIK 271
EAGA+ ++ G ++ A+D EA K I+
Sbjct: 188 EAGADVIIVGRGIYAAEDPVEAAKRIR 214
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein [Purines, pyrimidines, nucleosides, and nucleotides, Pyrimidine ribonucleotide biosynthesis]. Length = 214 |
| >gnl|CDD|238317 cd00564, TMP_TenI, Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 0.001
Identities = 16/36 (44%), Positives = 24/36 (66%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 268
GG+ P+NA +V+ AGA+ + SA+ GA D A A +
Sbjct: 157 GGITPENAAEVLAAGADGVAVISAITGADDPAAAAR 192
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. Length = 196 |
| >gnl|CDD|240077 cd04726, KGPDC_HPS, 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Score = 38.3 bits (90), Expect = 0.002
Identities = 19/56 (33%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270
DL+++ GV + V GG+ P + +AGA+ ++ G A+ GA D AEA +
Sbjct: 149 DLKKVKKLLGVK--VAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAAREF 202
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. Length = 202 |
| >gnl|CDD|223429 COG0352, ThiE, Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 37.6 bits (88), Expect = 0.003
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272
GG+ +N +V+EAGA+ + SA+ A D A A K ++
Sbjct: 165 GGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRN 204
|
Length = 211 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| COG0036 | 220 | Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate | 100.0 | |
| PRK08745 | 223 | ribulose-phosphate 3-epimerase; Provisional | 100.0 | |
| PRK08091 | 228 | ribulose-phosphate 3-epimerase; Validated | 100.0 | |
| PRK09722 | 229 | allulose-6-phosphate 3-epimerase; Provisional | 100.0 | |
| PRK08005 | 210 | epimerase; Validated | 100.0 | |
| PRK08883 | 220 | ribulose-phosphate 3-epimerase; Provisional | 100.0 | |
| PRK14057 | 254 | epimerase; Provisional | 100.0 | |
| KOG3111 | 224 | consensus D-ribulose-5-phosphate 3-epimerase [Carb | 100.0 | |
| PF00834 | 201 | Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam | 100.0 | |
| PTZ00170 | 228 | D-ribulose-5-phosphate 3-epimerase; Provisional | 100.0 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 100.0 | |
| PRK05581 | 220 | ribulose-phosphate 3-epimerase; Validated | 100.0 | |
| TIGR01163 | 210 | rpe ribulose-phosphate 3-epimerase. This family co | 100.0 | |
| cd00429 | 211 | RPE Ribulose-5-phosphate 3-epimerase (RPE). This e | 100.0 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 100.0 | |
| PRK13306 | 216 | ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; | 100.0 | |
| cd04724 | 242 | Tryptophan_synthase_alpha Ttryptophan synthase (TR | 100.0 | |
| PRK13813 | 215 | orotidine 5'-phosphate decarboxylase; Provisional | 99.97 | |
| TIGR03128 | 206 | RuMP_HxlA 3-hexulose-6-phosphate synthase. at the | 99.97 | |
| PRK13125 | 244 | trpA tryptophan synthase subunit alpha; Provisiona | 99.96 | |
| TIGR00262 | 256 | trpA tryptophan synthase, alpha subunit. Tryptopha | 99.96 | |
| cd04726 | 202 | KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl | 99.96 | |
| COG0269 | 217 | SgbH 3-hexulose-6-phosphate synthase and related p | 99.95 | |
| CHL00200 | 263 | trpA tryptophan synthase alpha subunit; Provisiona | 99.92 | |
| PRK00043 | 212 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.91 | |
| cd00564 | 196 | TMP_TenI Thiamine monophosphate synthase (TMP synt | 99.91 | |
| PRK00230 | 230 | orotidine 5'-phosphate decarboxylase; Reviewed | 99.91 | |
| PRK07028 | 430 | bifunctional hexulose-6-phosphate synthase/ribonuc | 99.9 | |
| PLN02591 | 250 | tryptophan synthase | 99.77 | |
| TIGR01740 | 213 | pyrF orotidine 5'-phosphate decarboxylase, subfami | 99.71 | |
| COG0352 | 211 | ThiE Thiamine monophosphate synthase [Coenzyme met | 99.71 | |
| PRK13111 | 258 | trpA tryptophan synthase subunit alpha; Provisiona | 99.71 | |
| PF00290 | 259 | Trp_syntA: Tryptophan synthase alpha chain; InterP | 99.71 | |
| PRK13305 | 218 | sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; | 99.69 | |
| COG0159 | 265 | TrpA Tryptophan synthase alpha chain [Amino acid t | 99.69 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 99.62 | |
| cd04722 | 200 | TIM_phosphate_binding TIM barrel proteins share a | 99.61 | |
| PRK12290 | 437 | thiE thiamine-phosphate pyrophosphorylase; Reviewe | 99.59 | |
| PRK06512 | 221 | thiamine-phosphate pyrophosphorylase; Provisional | 99.54 | |
| TIGR00693 | 196 | thiE thiamine-phosphate pyrophosphorylase. This mo | 99.53 | |
| PRK07695 | 201 | transcriptional regulator TenI; Provisional | 99.52 | |
| PRK02615 | 347 | thiamine-phosphate pyrophosphorylase; Provisional | 99.51 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 99.49 | |
| KOG4175 | 268 | consensus Tryptophan synthase alpha chain [Amino a | 99.45 | |
| PRK03512 | 211 | thiamine-phosphate pyrophosphorylase; Provisional | 99.45 | |
| PF02581 | 180 | TMP-TENI: Thiamine monophosphate synthase/TENI; In | 99.39 | |
| cd04725 | 216 | OMP_decarboxylase_like Orotidine 5'-phosphate deca | 99.38 | |
| PF00215 | 226 | OMPdecase: Orotidine 5'-phosphate decarboxylase / | 99.37 | |
| PRK09140 | 206 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R | 99.36 | |
| PLN02898 | 502 | HMP-P kinase/thiamin-monophosphate pyrophosphoryla | 99.34 | |
| PRK09517 | 755 | multifunctional thiamine-phosphate pyrophosphoryla | 99.34 | |
| PRK01130 | 221 | N-acetylmannosamine-6-phosphate 2-epimerase; Provi | 99.3 | |
| COG0284 | 240 | PyrF Orotidine-5'-phosphate decarboxylase [Nucleot | 99.25 | |
| cd00452 | 190 | KDPG_aldolase KDPG and KHG aldolase. This family b | 99.25 | |
| PRK07455 | 187 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.22 | |
| cd00405 | 203 | PRAI Phosphoribosylanthranilate isomerase (PRAI) c | 99.21 | |
| cd04729 | 219 | NanE N-acetylmannosamine-6-phosphate epimerase (Na | 99.17 | |
| PRK08999 | 312 | hypothetical protein; Provisional | 99.14 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 99.14 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 99.11 | |
| PRK06552 | 213 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.1 | |
| TIGR00343 | 287 | pyridoxal 5'-phosphate synthase, synthase subunit | 99.1 | |
| PRK05718 | 212 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 99.06 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 99.04 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 99.03 | |
| cd04727 | 283 | pdxS PdxS is a subunit of the pyridoxal 5'-phospha | 99.01 | |
| PRK04302 | 223 | triosephosphate isomerase; Provisional | 99.0 | |
| PRK04180 | 293 | pyridoxal biosynthesis lyase PdxS; Provisional | 98.94 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 98.9 | |
| cd00958 | 235 | DhnA Class I fructose-1,6-bisphosphate (FBP) aldol | 98.9 | |
| PF00218 | 254 | IGPS: Indole-3-glycerol phosphate synthase; InterP | 98.87 | |
| PF04131 | 192 | NanE: Putative N-acetylmannosamine-6-phosphate epi | 98.85 | |
| COG0134 | 254 | TrpC Indole-3-glycerol phosphate synthase [Amino a | 98.82 | |
| PRK13957 | 247 | indole-3-glycerol-phosphate synthase; Provisional | 98.82 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 98.81 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.79 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.75 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 98.75 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 98.75 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 98.74 | |
| TIGR01182 | 204 | eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho | 98.72 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 98.7 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 98.67 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 98.64 | |
| PF01081 | 196 | Aldolase: KDPG and KHG aldolase; InterPro: IPR0008 | 98.63 | |
| TIGR03151 | 307 | enACPred_II putative enoyl-(acyl-carrier-protein) | 98.62 | |
| PRK06806 | 281 | fructose-bisphosphate aldolase; Provisional | 98.62 | |
| PRK06015 | 201 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.62 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 98.61 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 98.61 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 98.6 | |
| cd01568 | 269 | QPRTase_NadC Quinolinate phosphoribosyl transferas | 98.57 | |
| cd04728 | 248 | ThiG Thiazole synthase (ThiG) is the tetrameric en | 98.55 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 98.55 | |
| PRK00208 | 250 | thiG thiazole synthase; Reviewed | 98.54 | |
| PRK13802 | 695 | bifunctional indole-3-glycerol phosphate synthase/ | 98.53 | |
| TIGR01949 | 258 | AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep | 98.52 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.5 | |
| COG3010 | 229 | NanE Putative N-acetylmannosamine-6-phosphate epim | 98.48 | |
| PLN02460 | 338 | indole-3-glycerol-phosphate synthase | 98.47 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.44 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 98.43 | |
| PF03437 | 254 | BtpA: BtpA family; InterPro: IPR005137 Photosystem | 98.42 | |
| PRK07114 | 222 | keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog | 98.41 | |
| PRK11572 | 248 | copper homeostasis protein CutC; Provisional | 98.4 | |
| PRK07226 | 267 | fructose-bisphosphate aldolase; Provisional | 98.39 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 98.38 | |
| PF03932 | 201 | CutC: CutC family; InterPro: IPR005627 Copper tran | 98.37 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 98.37 | |
| TIGR01859 | 282 | fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, | 98.36 | |
| cd04739 | 325 | DHOD_like Dihydroorotate dehydrogenase (DHOD) like | 98.35 | |
| PRK07315 | 293 | fructose-bisphosphate aldolase; Provisional | 98.35 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 98.34 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 98.33 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 98.32 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 98.31 | |
| PRK06096 | 284 | molybdenum transport protein ModD; Provisional | 98.31 | |
| PRK01222 | 210 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 98.29 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 98.29 | |
| PRK04169 | 232 | geranylgeranylglyceryl phosphate synthase-like pro | 98.29 | |
| PRK07428 | 288 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.25 | |
| cd04738 | 327 | DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl | 98.21 | |
| PF04481 | 242 | DUF561: Protein of unknown function (DUF561); Inte | 98.18 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 98.15 | |
| cd02940 | 299 | DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM | 98.14 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 98.13 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 98.11 | |
| COG0135 | 208 | TrpF Phosphoribosylanthranilate isomerase [Amino a | 98.11 | |
| TIGR00737 | 319 | nifR3_yhdG putative TIM-barrel protein, nifR3 fami | 98.09 | |
| PF01884 | 230 | PcrB: PcrB family; InterPro: IPR008205 This entry | 98.08 | |
| PRK06801 | 286 | hypothetical protein; Provisional | 98.06 | |
| PRK05848 | 273 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.05 | |
| TIGR01768 | 223 | GGGP-family geranylgeranylglyceryl phosphate synth | 98.05 | |
| TIGR02127 | 261 | pyrF_sub2 orotidine 5'-phosphate decarboxylase, su | 98.04 | |
| PF01729 | 169 | QRPTase_C: Quinolinate phosphoribosyl transferase, | 98.04 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 98.04 | |
| PRK05286 | 344 | dihydroorotate dehydrogenase 2; Reviewed | 98.04 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 98.03 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 98.02 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 98.02 | |
| cd02809 | 299 | alpha_hydroxyacid_oxid_FMN Family of homologous FM | 98.02 | |
| PF00697 | 197 | PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isome | 98.01 | |
| cd01572 | 268 | QPRTase Quinolinate phosphoribosyl transferase (QA | 98.01 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 98.01 | |
| PRK08072 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 98.0 | |
| cd04741 | 294 | DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c | 98.0 | |
| cd02812 | 219 | PcrB_like PcrB_like proteins. One member of this f | 97.99 | |
| TIGR00078 | 265 | nadC nicotinate-nucleotide pyrophosphorylase. Syno | 97.96 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 97.94 | |
| PLN02495 | 385 | oxidoreductase, acting on the CH-CH group of donor | 97.92 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 97.91 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 97.89 | |
| PF03060 | 330 | NMO: Nitronate monooxygenase; InterPro: IPR004136 | 97.89 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 97.87 | |
| PRK05567 | 486 | inosine 5'-monophosphate dehydrogenase; Reviewed | 97.86 | |
| PRK13958 | 207 | N-(5'-phosphoribosyl)anthranilate isomerase; Provi | 97.83 | |
| PRK11815 | 333 | tRNA-dihydrouridine synthase A; Provisional | 97.82 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 97.82 | |
| CHL00162 | 267 | thiG thiamin biosynthesis protein G; Validated | 97.81 | |
| cd00945 | 201 | Aldolase_Class_I Class I aldolases. The class I al | 97.79 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 97.78 | |
| cd07937 | 275 | DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar | 97.76 | |
| COG1646 | 240 | Predicted phosphate-binding enzymes, TIM-barrel fo | 97.75 | |
| PRK07107 | 502 | inosine 5-monophosphate dehydrogenase; Validated | 97.74 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 97.73 | |
| cd01573 | 272 | modD_like ModD; Quinolinate phosphoribosyl transfe | 97.71 | |
| PRK07896 | 289 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.71 | |
| PRK05742 | 277 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.7 | |
| PRK08385 | 278 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.69 | |
| TIGR01036 | 335 | pyrD_sub2 dihydroorotate dehydrogenase, subfamily | 97.67 | |
| PLN02716 | 308 | nicotinate-nucleotide diphosphorylase (carboxylati | 97.65 | |
| PRK08227 | 264 | autoinducer 2 aldolase; Validated | 97.65 | |
| cd07938 | 274 | DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, | 97.64 | |
| PRK06256 | 336 | biotin synthase; Validated | 97.64 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 97.62 | |
| PRK05500 | 477 | bifunctional orotidine 5'-phosphate decarboxylase/ | 97.62 | |
| PRK11840 | 326 | bifunctional sulfur carrier protein/thiazole synth | 97.6 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 97.59 | |
| TIGR00433 | 296 | bioB biotin synthetase. Catalyzes the last step of | 97.58 | |
| COG0800 | 211 | Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca | 97.55 | |
| COG1830 | 265 | FbaB DhnA-type fructose-1,6-bisphosphate aldolase | 97.55 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 97.55 | |
| COG3142 | 241 | CutC Uncharacterized protein involved in copper re | 97.51 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 97.51 | |
| PRK06852 | 304 | aldolase; Validated | 97.51 | |
| cd07943 | 263 | DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te | 97.51 | |
| PRK05692 | 287 | hydroxymethylglutaryl-CoA lyase; Provisional | 97.5 | |
| PRK02506 | 310 | dihydroorotate dehydrogenase 1A; Reviewed | 97.49 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 97.48 | |
| PRK09016 | 296 | quinolinate phosphoribosyltransferase; Validated | 97.48 | |
| PRK06543 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.47 | |
| PRK09427 | 454 | bifunctional indole-3-glycerol phosphate synthase/ | 97.45 | |
| cd04732 | 234 | HisA HisA. Phosphoribosylformimino-5-aminoimidazol | 97.45 | |
| PRK14041 | 467 | oxaloacetate decarboxylase; Provisional | 97.45 | |
| TIGR00736 | 231 | nifR3_rel_arch TIM-barrel protein, putative. Membe | 97.45 | |
| PRK06106 | 281 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.44 | |
| PLN02826 | 409 | dihydroorotate dehydrogenase | 97.43 | |
| PRK14567 | 253 | triosephosphate isomerase; Provisional | 97.4 | |
| PRK08185 | 283 | hypothetical protein; Provisional | 97.39 | |
| TIGR02311 | 249 | HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 97.39 | |
| COG0149 | 251 | TpiA Triosephosphate isomerase [Carbohydrate trans | 97.39 | |
| PRK12331 | 448 | oxaloacetate decarboxylase; Provisional | 97.38 | |
| cd00311 | 242 | TIM Triosephosphate isomerase (TIM) is a glycolyti | 97.38 | |
| TIGR01108 | 582 | oadA oxaloacetate decarboxylase alpha subunit. Thi | 97.38 | |
| cd04743 | 320 | NPD_PKS 2-Nitropropane dioxygenase (NPD)-like doma | 97.37 | |
| PRK08318 | 420 | dihydropyrimidine dehydrogenase subunit B; Validat | 97.37 | |
| PRK07094 | 323 | biotin synthase; Provisional | 97.36 | |
| PRK05437 | 352 | isopentenyl pyrophosphate isomerase; Provisional | 97.35 | |
| PRK08508 | 279 | biotin synthase; Provisional | 97.34 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 97.34 | |
| PF01180 | 295 | DHO_dh: Dihydroorotate dehydrogenase; InterPro: IP | 97.33 | |
| PRK06978 | 294 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.33 | |
| COG0167 | 310 | PyrD Dihydroorotate dehydrogenase [Nucleotide tran | 97.32 | |
| PRK00125 | 278 | pyrF orotidine 5'-phosphate decarboxylase; Reviewe | 97.32 | |
| PRK14565 | 237 | triosephosphate isomerase; Provisional | 97.31 | |
| PRK08195 | 337 | 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac | 97.3 | |
| PRK14114 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.29 | |
| COG0157 | 280 | NadC Nicotinate-nucleotide pyrophosphorylase [Coen | 97.27 | |
| TIGR03217 | 333 | 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. | 97.27 | |
| PRK06559 | 290 | nicotinate-nucleotide pyrophosphorylase; Provision | 97.25 | |
| PRK13587 | 234 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.24 | |
| PRK13803 | 610 | bifunctional phosphoribosylanthranilate isomerase/ | 97.22 | |
| PF05690 | 247 | ThiG: Thiazole biosynthesis protein ThiG; InterPro | 97.22 | |
| cd07939 | 259 | DRE_TIM_NifV Streptomyces rubellomurinus FrbC and | 97.22 | |
| KOG4201 | 289 | consensus Anthranilate synthase component II [Amin | 97.21 | |
| cd02811 | 326 | IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl di | 97.21 | |
| PRK09282 | 592 | pyruvate carboxylase subunit B; Validated | 97.2 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 97.18 | |
| TIGR03239 | 249 | GarL 2-dehydro-3-deoxyglucarate aldolase. In E. co | 97.18 | |
| PLN02363 | 256 | phosphoribosylanthranilate isomerase | 97.18 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 97.14 | |
| COG0434 | 263 | SgcQ Predicted TIM-barrel enzyme [General function | 97.12 | |
| COG0214 | 296 | SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme meta | 97.11 | |
| cd02922 | 344 | FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding dom | 97.09 | |
| PLN02746 | 347 | hydroxymethylglutaryl-CoA lyase | 97.09 | |
| PRK14905 | 355 | triosephosphate isomerase/PTS system glucose/sucro | 97.09 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 97.09 | |
| TIGR00007 | 230 | phosphoribosylformimino-5-aminoimidazole carboxami | 97.07 | |
| cd01571 | 302 | NAPRTase_B Nicotinate phosphoribosyltransferase (N | 97.06 | |
| KOG1606 | 296 | consensus Stationary phase-induced protein, SOR/SN | 97.06 | |
| PRK12330 | 499 | oxaloacetate decarboxylase; Provisional | 97.06 | |
| PRK04128 | 228 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.05 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 97.05 | |
| TIGR02660 | 365 | nifV_homocitr homocitrate synthase NifV. This fami | 97.04 | |
| cd04733 | 338 | OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN | 97.04 | |
| PLN02389 | 379 | biotin synthase | 97.04 | |
| PRK14024 | 241 | phosphoribosyl isomerase A; Provisional | 97.04 | |
| cd04735 | 353 | OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN | 97.03 | |
| PRK10558 | 256 | alpha-dehydro-beta-deoxy-D-glucarate aldolase; Pro | 97.03 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 97.02 | |
| cd04737 | 351 | LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding d | 97.02 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 97.02 | |
| PRK00748 | 233 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 97.01 | |
| cd07945 | 280 | DRE_TIM_CMS Leptospira interrogans citramalate syn | 97.0 | |
| PRK09250 | 348 | fructose-bisphosphate aldolase; Provisional | 97.0 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 97.0 | |
| PRK10128 | 267 | 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | 96.99 | |
| TIGR02151 | 333 | IPP_isom_2 isopentenyl-diphosphate delta-isomerase | 96.99 | |
| TIGR02129 | 253 | hisA_euk phosphoribosylformimino-5-aminoimidazole | 96.98 | |
| cd02933 | 338 | OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind | 96.98 | |
| PRK13586 | 232 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.98 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 96.98 | |
| PRK13585 | 241 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met | 96.97 | |
| PF00682 | 237 | HMGL-like: HMGL-like of this family is not conserv | 96.94 | |
| PLN02446 | 262 | (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methy | 96.94 | |
| COG1891 | 235 | Uncharacterized protein conserved in archaea [Func | 96.92 | |
| PRK02227 | 238 | hypothetical protein; Provisional | 96.91 | |
| PRK14040 | 593 | oxaloacetate decarboxylase; Provisional | 96.91 | |
| TIGR00735 | 254 | hisF imidazoleglycerol phosphate synthase, cyclase | 96.91 | |
| cd02932 | 336 | OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN | 96.91 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 96.9 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 96.9 | |
| PRK00042 | 250 | tpiA triosephosphate isomerase; Provisional | 96.88 | |
| PLN02617 | 538 | imidazole glycerol phosphate synthase hisHF | 96.84 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 96.83 | |
| PLN02429 | 315 | triosephosphate isomerase | 96.82 | |
| TIGR03572 | 232 | WbuZ glycosyl amidation-associated protein WbuZ. T | 96.81 | |
| PTZ00333 | 255 | triosephosphate isomerase; Provisional | 96.81 | |
| PRK13523 | 337 | NADPH dehydrogenase NamA; Provisional | 96.8 | |
| COG0325 | 228 | Predicted enzyme with a TIM-barrel fold [General f | 96.78 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 96.78 | |
| PRK14042 | 596 | pyruvate carboxylase subunit B; Provisional | 96.77 | |
| PRK15492 | 260 | triosephosphate isomerase; Provisional | 96.75 | |
| cd07941 | 273 | DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 | 96.74 | |
| PRK02083 | 253 | imidazole glycerol phosphate synthase subunit HisF | 96.71 | |
| cd07940 | 268 | DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- | 96.71 | |
| COG2070 | 336 | Dioxygenases related to 2-nitropropane dioxygenase | 96.66 | |
| TIGR00284 | 499 | dihydropteroate synthase-related protein. This pro | 96.66 | |
| PF00977 | 229 | His_biosynth: Histidine biosynthesis protein; Inte | 96.64 | |
| cd04740 | 296 | DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c | 96.63 | |
| TIGR02090 | 363 | LEU1_arch isopropylmalate/citramalate/homocitrate | 96.62 | |
| cd04742 | 418 | NPD_FabD 2-Nitropropane dioxygenase (NPD)-like dom | 96.6 | |
| cd02801 | 231 | DUS_like_FMN Dihydrouridine synthase-like (DUS-lik | 96.59 | |
| cd04723 | 233 | HisA_HisF Phosphoribosylformimino-5-aminoimidazole | 96.58 | |
| COG1954 | 181 | GlpP Glycerol-3-phosphate responsive antiterminato | 96.57 | |
| TIGR01919 | 243 | hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosy | 96.54 | |
| PF04309 | 175 | G3P_antiterm: Glycerol-3-phosphate responsive anti | 96.54 | |
| cd04731 | 243 | HisF The cyclase subunit of imidazoleglycerol phos | 96.51 | |
| PRK07188 | 352 | nicotinate phosphoribosyltransferase; Provisional | 96.5 | |
| COG1411 | 229 | Uncharacterized protein related to proFAR isomeras | 96.47 | |
| PRK15108 | 345 | biotin synthase; Provisional | 96.43 | |
| PRK12581 | 468 | oxaloacetate decarboxylase; Provisional | 96.42 | |
| PRK12738 | 286 | kbaY tagatose-bisphosphate aldolase; Reviewed | 96.41 | |
| PLN02411 | 391 | 12-oxophytodienoate reductase | 96.34 | |
| PRK07259 | 301 | dihydroorotate dehydrogenase 1B; Reviewed | 96.33 | |
| PRK04165 | 450 | acetyl-CoA decarbonylase/synthase complex subunit | 96.32 | |
| PRK09389 | 488 | (R)-citramalate synthase; Provisional | 96.31 | |
| PRK12344 | 524 | putative alpha-isopropylmalate/homocitrate synthas | 96.31 | |
| PRK01033 | 258 | imidazole glycerol phosphate synthase subunit HisF | 96.28 | |
| COG0106 | 241 | HisA Phosphoribosylformimino-5-aminoimidazole carb | 96.27 | |
| cd00956 | 211 | Transaldolase_FSA Transaldolase-like fructose-6-ph | 96.25 | |
| PRK12999 | 1146 | pyruvate carboxylase; Reviewed | 96.24 | |
| PF01207 | 309 | Dus: Dihydrouridine synthase (Dus); InterPro: IPR0 | 96.24 | |
| PF01645 | 368 | Glu_synthase: Conserved region in glutamate syntha | 96.19 | |
| PRK09240 | 371 | thiH thiamine biosynthesis protein ThiH; Reviewed | 96.18 | |
| PF00121 | 244 | TIM: Triosephosphate isomerase; InterPro: IPR00065 | 96.16 | |
| cd02931 | 382 | ER_like_FMN Enoate reductase (ER)-like FMN-binding | 96.12 | |
| PLN02561 | 253 | triosephosphate isomerase | 96.07 | |
| cd02808 | 392 | GltS_FMN Glutamate synthase (GltS) FMN-binding dom | 96.03 | |
| TIGR02814 | 444 | pfaD_fam PfaD family protein. The protein PfaD is | 96.03 | |
| cd00331 | 217 | IGPS Indole-3-glycerol phosphate synthase (IGPS); | 96.03 | |
| PF00478 | 352 | IMPDH: IMP dehydrogenase / GMP reductase domain; I | 96.02 | |
| PRK10605 | 362 | N-ethylmaleimide reductase; Provisional | 96.0 | |
| cd04747 | 361 | OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN | 95.98 | |
| PRK00915 | 513 | 2-isopropylmalate synthase; Validated | 95.98 | |
| TIGR00167 | 288 | cbbA ketose-bisphosphate aldolases. fructose-bisph | 95.98 | |
| PRK07998 | 283 | gatY putative fructose-1,6-bisphosphate aldolase; | 95.97 | |
| PRK08610 | 286 | fructose-bisphosphate aldolase; Reviewed | 95.94 | |
| TIGR00419 | 205 | tim triosephosphate isomerase. Triosephosphate iso | 95.9 | |
| TIGR01858 | 282 | tag_bisphos_ald class II aldolase, tagatose bispho | 95.88 | |
| COG1902 | 363 | NemA NADH:flavin oxidoreductases, Old Yellow Enzym | 95.85 | |
| cd02930 | 353 | DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin | 95.82 | |
| cd00947 | 276 | TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a | 95.78 | |
| PRK08662 | 343 | nicotinate phosphoribosyltransferase; Reviewed | 95.77 | |
| PF03328 | 221 | HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family | 95.75 | |
| TIGR01037 | 300 | pyrD_sub1_fam dihydroorotate dehydrogenase (subfam | 95.75 | |
| PRK12858 | 340 | tagatose 1,6-diphosphate aldolase; Reviewed | 95.74 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 95.73 | |
| cd02810 | 289 | DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) | 95.69 | |
| COG2022 | 262 | ThiG Uncharacterized enzyme of thiazole biosynthes | 95.68 | |
| PRK07565 | 334 | dihydroorotate dehydrogenase 2; Reviewed | 95.67 | |
| PRK09196 | 347 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.63 | |
| cd03174 | 265 | DRE_TIM_metallolyase DRE-TIM metallolyase superfam | 95.58 | |
| PLN02623 | 581 | pyruvate kinase | 95.58 | |
| cd00959 | 203 | DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of | 95.56 | |
| PTZ00314 | 495 | inosine-5'-monophosphate dehydrogenase; Provisiona | 95.56 | |
| COG3836 | 255 | HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldola | 95.53 | |
| cd04734 | 343 | OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN | 95.49 | |
| cd08556 | 189 | GDPD Glycerophosphodiester phosphodiesterase domai | 95.48 | |
| PRK07535 | 261 | methyltetrahydrofolate:corrinoid/iron-sulfur prote | 95.45 | |
| TIGR00742 | 318 | yjbN tRNA dihydrouridine synthase A. Members of th | 95.45 | |
| PRK12737 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 95.43 | |
| PRK06267 | 350 | hypothetical protein; Provisional | 95.43 | |
| PLN02535 | 364 | glycolate oxidase | 95.42 | |
| PRK15452 | 443 | putative protease; Provisional | 95.36 | |
| cd00019 | 279 | AP2Ec AP endonuclease family 2; These endonuclease | 95.33 | |
| cd00516 | 281 | PRTase_typeII Phosphoribosyltransferase (PRTase) t | 95.32 | |
| PRK12857 | 284 | fructose-1,6-bisphosphate aldolase; Reviewed | 95.26 | |
| TIGR01521 | 347 | FruBisAldo_II_B fructose-bisphosphate aldolase, cl | 95.26 | |
| PRK07709 | 285 | fructose-bisphosphate aldolase; Provisional | 95.25 | |
| PRK10415 | 321 | tRNA-dihydrouridine synthase B; Provisional | 95.25 | |
| PRK05835 | 307 | fructose-bisphosphate aldolase; Provisional | 95.25 | |
| PRK10550 | 312 | tRNA-dihydrouridine synthase C; Provisional | 95.18 | |
| TIGR00977 | 526 | LeuA_rel 2-isopropylmalate synthase/homocitrate sy | 95.15 | |
| cd02929 | 370 | TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) | 95.12 | |
| cd07944 | 266 | DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- | 95.09 | |
| PRK15447 | 301 | putative protease; Provisional | 95.09 | |
| TIGR02708 | 367 | L_lactate_ox L-lactate oxidase. Members of this pr | 95.07 | |
| cd08210 | 364 | RLP_RrRLP Ribulose bisphosphate carboxylase like p | 95.07 | |
| TIGR01417 | 565 | PTS_I_fam phosphoenolpyruvate-protein phosphotrans | 95.07 | |
| TIGR02317 | 285 | prpB methylisocitrate lyase. Members of this famil | 94.99 | |
| cd03332 | 383 | LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin | 94.98 | |
| PRK02412 | 253 | aroD 3-dehydroquinate dehydratase; Provisional | 94.97 | |
| TIGR00190 | 423 | thiC thiamine biosynthesis protein ThiC. The thiC | 94.97 | |
| TIGR01302 | 450 | IMP_dehydrog inosine-5'-monophosphate dehydrogenas | 94.95 | |
| PRK06843 | 404 | inosine 5-monophosphate dehydrogenase; Validated | 94.95 | |
| TIGR01418 | 782 | PEP_synth phosphoenolpyruvate synthase. Also calle | 94.92 | |
| PRK09195 | 284 | gatY tagatose-bisphosphate aldolase; Reviewed | 94.91 | |
| cd04736 | 361 | MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-bin | 94.81 | |
| TIGR01306 | 321 | GMP_reduct_2 guanosine monophosphate reductase, ba | 94.81 | |
| cd08207 | 406 | RLP_NonPhot Ribulose bisphosphate carboxylase like | 94.8 | |
| cd07942 | 284 | DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and | 94.79 | |
| TIGR03699 | 340 | mena_SCO4550 menaquinone biosynthesis protein, SCO | 94.76 | |
| PRK05096 | 346 | guanosine 5'-monophosphate oxidoreductase; Provisi | 94.74 | |
| TIGR01305 | 343 | GMP_reduct_1 guanosine monophosphate reductase, eu | 94.69 | |
| cd00423 | 258 | Pterin_binding Pterin binding enzymes. This family | 94.69 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 94.68 | |
| COG0042 | 323 | tRNA-dihydrouridine synthase [Translation, ribosom | 94.65 | |
| KOG2335 | 358 | consensus tRNA-dihydrouridine synthase [Translatio | 94.62 | |
| PLN02979 | 366 | glycolate oxidase | 94.57 | |
| PLN03228 | 503 | methylthioalkylmalate synthase; Provisional | 94.57 | |
| TIGR02351 | 366 | thiH thiazole biosynthesis protein ThiH. Members t | 94.54 | |
| TIGR03551 | 343 | F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav | 94.53 | |
| COG1856 | 275 | Uncharacterized homolog of biotin synthetase [Func | 94.51 | |
| PRK06464 | 795 | phosphoenolpyruvate synthase; Validated | 94.48 | |
| PRK07084 | 321 | fructose-bisphosphate aldolase; Provisional | 94.43 | |
| PRK14566 | 260 | triosephosphate isomerase; Provisional | 94.42 | |
| cd00739 | 257 | DHPS DHPS subgroup of Pterin binding enzymes. DHPS | 94.41 | |
| PRK13398 | 266 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 94.38 | |
| cd08208 | 424 | RLP_Photo Ribulose bisphosphate carboxylase like p | 94.37 | |
| cd02067 | 119 | B12-binding B12 binding domain (B12-BD). This doma | 94.34 | |
| PRK03739 | 552 | 2-isopropylmalate synthase; Validated | 94.3 | |
| PRK11320 | 292 | prpB 2-methylisocitrate lyase; Provisional | 94.28 | |
| COG0119 | 409 | LeuA Isopropylmalate/homocitrate/citramalate synth | 94.24 | |
| TIGR02026 | 497 | BchE magnesium-protoporphyrin IX monomethyl ester | 94.24 | |
| cd00377 | 243 | ICL_PEPM Members of the ICL/PEPM enzyme family cat | 94.15 | |
| cd02071 | 122 | MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin | 94.12 | |
| KOG0538 | 363 | consensus Glycolate oxidase [Energy production and | 94.11 | |
| TIGR00044 | 229 | pyridoxal phosphate enzyme, YggS family. Members o | 94.1 | |
| cd00453 | 340 | FTBP_aldolase_II Fructose/tagarose-bisphosphate al | 94.1 | |
| TIGR02319 | 294 | CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos | 94.07 | |
| PF06073 | 110 | DUF934: Bacterial protein of unknown function (DUF | 94.06 | |
| PF01791 | 236 | DeoC: DeoC/LacD family aldolase; InterPro: IPR0029 | 94.05 | |
| PF03740 | 239 | PdxJ: Pyridoxal phosphate biosynthesis protein Pdx | 94.04 | |
| PF00724 | 341 | Oxidored_FMN: NADH:flavin oxidoreductase / NADH ox | 94.02 | |
| TIGR03471 | 472 | HpnJ hopanoid biosynthesis associated radical SAM | 93.99 | |
| TIGR02320 | 285 | PEP_mutase phosphoenolpyruvate phosphomutase. A cl | 93.97 | |
| TIGR00973 | 494 | leuA_bact 2-isopropylmalate synthase, bacterial ty | 93.94 | |
| PRK02261 | 137 | methylaspartate mutase subunit S; Provisional | 93.93 | |
| PRK11197 | 381 | lldD L-lactate dehydrogenase; Provisional | 93.91 | |
| cd03311 | 332 | CIMS_C_terminal_like CIMS - Cobalamine-independent | 93.91 | |
| PRK05458 | 326 | guanosine 5'-monophosphate oxidoreductase; Provisi | 93.9 | |
| PRK13397 | 250 | 3-deoxy-7-phosphoheptulonate synthase; Provisional | 93.9 | |
| PRK13307 | 391 | bifunctional formaldehyde-activating enzyme/3-hexu | 93.85 | |
| cd07947 | 279 | DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt | 93.82 | |
| KOG2550 | 503 | consensus IMP dehydrogenase/GMP reductase [Nucleot | 93.79 | |
| cd00381 | 325 | IMPDH IMPDH: The catalytic domain of the inosine m | 93.78 | |
| TIGR00734 | 221 | hisAF_rel hisA/hisF family protein. This alignment | 93.77 | |
| TIGR01496 | 257 | DHPS dihydropteroate synthase. This model represen | 93.75 | |
| TIGR01303 | 475 | IMP_DH_rel_1 IMP dehydrogenase family protein. Thi | 93.66 | |
| PRK05826 | 465 | pyruvate kinase; Provisional | 93.63 | |
| TIGR00640 | 132 | acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal | 93.6 | |
| PRK04452 | 319 | acetyl-CoA decarbonylase/synthase complex subunit | 93.6 | |
| cd06822 | 227 | PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)- | 93.59 | |
| TIGR01093 | 228 | aroD 3-dehydroquinate dehydratase, type I. Type II | 93.52 | |
| cd00408 | 281 | DHDPS-like Dihydrodipicolinate synthase family. A | 93.52 | |
| cd02911 | 233 | arch_FMN Archeal FMN-binding domain. This family o | 93.42 | |
| KOG4013 | 255 | consensus Predicted Cu2+ homeostasis protein CutC | 93.39 | |
| PF01116 | 287 | F_bP_aldolase: Fructose-bisphosphate aldolase clas | 93.37 | |
| COG0854 | 243 | PdxJ Pyridoxal phosphate biosynthesis protein [Coe | 93.36 | |
| COG0502 | 335 | BioB Biotin synthase and related enzymes [Coenzyme | 93.23 | |
| PRK11613 | 282 | folP dihydropteroate synthase; Provisional | 93.22 | |
| PLN02493 | 367 | probable peroxisomal (S)-2-hydroxy-acid oxidase | 93.21 | |
| TIGR03326 | 412 | rubisco_III ribulose bisphosphate carboxylase, typ | 93.15 | |
| PRK05904 | 353 | coproporphyrinogen III oxidase; Provisional | 93.09 | |
| TIGR01235 | 1143 | pyruv_carbox pyruvate carboxylase. This enzyme pla | 92.96 | |
| TIGR00259 | 257 | thylakoid_BtpA membrane complex biogenesis protein | 92.95 | |
| PLN02858 | 1378 | fructose-bisphosphate aldolase | 92.89 | |
| TIGR00559 | 237 | pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req | 92.86 | |
| TIGR00423 | 309 | radical SAM domain protein, CofH subfamily. This p | 92.84 | |
| PRK05265 | 239 | pyridoxine 5'-phosphate synthase; Provisional | 92.83 | |
| cd02803 | 327 | OYE_like_FMN_family Old yellow enzyme (OYE)-like F | 92.76 | |
| cd00003 | 234 | PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase | 92.76 | |
| PRK08255 | 765 | salicylyl-CoA 5-hydroxylase; Reviewed | 92.75 | |
| PF04476 | 235 | DUF556: Protein of unknown function (DUF556); Inte | 92.63 | |
| cd04730 | 236 | NPD_like 2-Nitropropane dioxygenase (NPD), one of | 92.62 | |
| PRK08649 | 368 | inosine 5-monophosphate dehydrogenase; Validated | 92.53 | |
| TIGR00970 | 564 | leuA_yeast 2-isopropylmalate synthase, yeast type. | 92.51 | |
| cd07948 | 262 | DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s | 92.47 | |
| PF13714 | 238 | PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB | 92.44 | |
| PRK09057 | 380 | coproporphyrinogen III oxidase; Provisional | 92.39 | |
| PRK10076 | 213 | pyruvate formate lyase II activase; Provisional | 92.36 | |
| TIGR01304 | 369 | IMP_DH_rel_2 IMP dehydrogenase family protein. Thi | 92.32 | |
| PRK14847 | 333 | hypothetical protein; Provisional | 92.31 | |
| PRK07360 | 371 | FO synthase subunit 2; Reviewed | 92.3 | |
| cd00946 | 345 | FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis | 92.29 | |
| COG2108 | 353 | Uncharacterized conserved protein related to pyruv | 92.26 | |
| PRK13399 | 347 | fructose-1,6-bisphosphate aldolase; Provisional | 92.26 | |
| PRK04326 | 330 | methionine synthase; Provisional | 92.24 | |
| TIGR01769 | 205 | GGGP geranylgeranylglyceryl phosphate synthase. Th | 92.19 | |
| PRK07807 | 479 | inosine 5-monophosphate dehydrogenase; Validated | 92.14 | |
| PRK00507 | 221 | deoxyribose-phosphate aldolase; Provisional | 92.11 | |
| PRK13962 | 645 | bifunctional phosphoglycerate kinase/triosephospha | 92.09 | |
| COG0821 | 361 | gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat | 92.06 | |
| PRK13352 | 431 | thiamine biosynthesis protein ThiC; Provisional | 92.06 | |
| COG0422 | 432 | ThiC Thiamine biosynthesis protein ThiC [Coenzyme | 92.05 | |
| PF01487 | 224 | DHquinase_I: Type I 3-dehydroquinase; InterPro: IP | 92.02 | |
| cd03316 | 357 | MR_like Mandelate racemase (MR)-like subfamily of | 92.01 | |
| TIGR03550 | 322 | F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav | 91.99 | |
| cd08205 | 367 | RuBisCO_IV_RLP Ribulose bisphosphate carboxylase l | 91.94 | |
| PF02310 | 121 | B12-binding: B12 binding domain; InterPro: IPR0061 | 91.93 | |
| cd08209 | 391 | RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopent | 91.91 | |
| PF01070 | 356 | FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR | 91.91 | |
| PRK01261 | 229 | aroD 3-dehydroquinate dehydratase; Provisional | 91.9 | |
| PRK05628 | 375 | coproporphyrinogen III oxidase; Validated | 91.8 | |
| PRK11858 | 378 | aksA trans-homoaconitate synthase; Reviewed | 91.77 | |
| TIGR00612 | 346 | ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho | 91.77 | |
| cd08148 | 366 | RuBisCO_large Ribulose bisphosphate carboxylase la | 91.77 | |
| PRK00278 | 260 | trpC indole-3-glycerol-phosphate synthase; Reviewe | 91.76 | |
| PLN02274 | 505 | inosine-5'-monophosphate dehydrogenase | 91.74 | |
| TIGR01334 | 277 | modD putative molybdenum utilization protein ModD. | 91.61 | |
| PLN02321 | 632 | 2-isopropylmalate synthase | 91.61 | |
| PRK09197 | 350 | fructose-bisphosphate aldolase; Provisional | 91.58 | |
| COG0107 | 256 | HisF Imidazoleglycerol-phosphate synthase [Amino a | 91.47 | |
| TIGR01520 | 357 | FruBisAldo_II_A fructose-bisphosphate aldolase, cl | 91.46 | |
| COG5016 | 472 | Pyruvate/oxaloacetate carboxyltransferase [Energy | 91.46 | |
| PTZ00300 | 454 | pyruvate kinase; Provisional | 91.41 | |
| cd02072 | 128 | Glm_B12_BD B12 binding domain of glutamate mutase | 91.29 | |
| PLN02334 | 229 | ribulose-phosphate 3-epimerase | 91.28 | |
| TIGR00676 | 272 | fadh2 5,10-methylenetetrahydrofolate reductase, pr | 91.27 |
| >COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-69 Score=476.89 Aligned_cols=217 Identities=57% Similarity=0.904 Sum_probs=209.7
Q ss_pred CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 56 ~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
.+.+|+|||||+|+.++++++++++++|+||+|+||||||||||++|||.+++++|+.|+.|+||||||.+|.+|++.|+
T Consensus 2 ~~~~iapSILsaD~~~l~~el~~~~~agad~iH~DVMDghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa 81 (220)
T COG0036 2 KMMKIAPSILSADFARLGEELKALEAAGADLIHIDVMDGHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFA 81 (220)
T ss_pred CCceeeeehhhCCHhHHHHHHHHHHHcCCCEEEEeccCCCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|||+||||.|+ .+++.++++.||+.|+|+|+++||.||++.++++++.+|+|++|||+|||+||+|+|++++||++
T Consensus 82 ~agad~It~H~E~--~~~~~r~i~~Ik~~G~kaGv~lnP~Tp~~~i~~~l~~vD~VllMsVnPGfgGQ~Fi~~~l~Ki~~ 159 (220)
T COG0036 82 KAGADIITFHAEA--TEHIHRTIQLIKELGVKAGLVLNPATPLEALEPVLDDVDLVLLMSVNPGFGGQKFIPEVLEKIRE 159 (220)
T ss_pred HhCCCEEEEEecc--CcCHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHhhCCEEEEEeECCCCcccccCHHHHHHHHH
Confidence 9999999999995 68999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+|+++.+++ ++.|+||||||.+|++++.++|||++|+||+||+.+|+++.++.++....
T Consensus 160 lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGSalF~~~d~~~~i~~~~~~~~ 218 (220)
T COG0036 160 LRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGSALFGADDYKATIRELRGELL 218 (220)
T ss_pred HHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEEEEeCCccHHHHHHHHHHHhh
Confidence 999998766 88999999999999999999999999999999999999999999987654
|
|
| >PRK08745 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-67 Score=469.31 Aligned_cols=217 Identities=49% Similarity=0.807 Sum_probs=209.7
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~ 135 (281)
.++|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++||+++++++|+. ++.++||||||.||++|++.++
T Consensus 3 ~~~i~pSil~ad~~~l~~~i~~l~~~g~d~lHiDimDG~FVPN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~ 82 (223)
T PRK08745 3 PTAIAPSILSADFARLGEEVDNVLKAGADWVHFDVMDNHYVPNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFA 82 (223)
T ss_pred CcEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHH
Confidence 457999999999999999999999999999999999999999999999999999998 7999999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|||+|+||+|+ ..++.++++.||++|+++|+++||.||++.++++++.+|+|++|||+|||+||+|+|.+++||++
T Consensus 83 ~~gad~I~~H~Ea--~~~~~~~l~~Ir~~g~k~GlalnP~T~~~~i~~~l~~vD~VlvMtV~PGf~GQ~fi~~~l~KI~~ 160 (223)
T PRK08745 83 DAGATTISFHPEA--SRHVHRTIQLIKSHGCQAGLVLNPATPVDILDWVLPELDLVLVMSVNPGFGGQAFIPSALDKLRA 160 (223)
T ss_pred HhCCCEEEEcccC--cccHHHHHHHHHHCCCceeEEeCCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHHH
Confidence 9999999999996 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+|++++++++++.|+||||||.+|++++.++|||++|+||+||+++||+++++++++.++
T Consensus 161 l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~V~GSaiF~~~d~~~~~~~lr~~~~ 220 (223)
T PRK08745 161 IRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTFVAGSAIFNAPDYAQVIAQMRAAVA 220 (223)
T ss_pred HHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHH
Confidence 999999888888999999999999999999999999999999999999999999998764
|
|
| >PRK08091 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-66 Score=459.75 Aligned_cols=214 Identities=26% Similarity=0.403 Sum_probs=206.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
+..|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||+.+++++|+ +.|+||||||.||++|++.+++
T Consensus 12 ~~~I~pSil~ad~~~l~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~ 89 (228)
T PRK08091 12 QQPISVGILASNWLKFNETLTTLSENQLRLLHFDIADGQFSPFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKACVA 89 (228)
T ss_pred CCeEEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999985 6899999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCC--cEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGA--KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~--k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+|||+|+||+|+ ..++.++++.||++|+ ++|+++||+||++.++++++.+|+|++|||+|||+||+|++.+++||+
T Consensus 90 aGad~It~H~Ea--~~~~~~~l~~Ik~~g~~~kaGlalnP~Tp~~~i~~~l~~vD~VLiMtV~PGfgGQ~f~~~~l~KI~ 167 (228)
T PRK08091 90 AGADIVTLQVEQ--THDLALTIEWLAKQKTTVLIGLCLCPETPISLLEPYLDQIDLIQILTLDPRTGTKAPSDLILDRVI 167 (228)
T ss_pred hCCCEEEEcccC--cccHHHHHHHHHHCCCCceEEEEECCCCCHHHHHHHHhhcCEEEEEEECCCCCCccccHHHHHHHH
Confidence 999999999996 4678999999999999 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
++|++++++++++.|+||||||.+|++++.++|||++|+||+||+++|+++.+++|++.+
T Consensus 168 ~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V~GSalF~~~d~~~~i~~l~~~~ 227 (228)
T PRK08091 168 QVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVVSGSALFSQGELKTTLKEWKSSL 227 (228)
T ss_pred HHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChhhhCCCCHHHHHHHHHHhh
Confidence 999999998888999999999999999999999999999999999999999999999865
|
|
| >PRK09722 allulose-6-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-66 Score=459.88 Aligned_cols=217 Identities=34% Similarity=0.664 Sum_probs=206.7
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.++|+|||||+|+.+|+++++.+++ |+||+|+|||||+||||++||+.++++||+.|++|+|+||||.||++|++.+++
T Consensus 2 ~~~I~pSil~ad~~~l~~el~~l~~-g~d~lH~DiMDG~FVPN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~ 80 (229)
T PRK09722 2 RMKISPSLMCMDLLKFKEQIEFLNS-KADYFHIDIMDGHFVPNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLAD 80 (229)
T ss_pred CceEEeehhhcCHHHHHHHHHHHHh-CCCEEEEecccCccCCCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHH
Confidence 4579999999999999999999998 899999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|||+|+||+|+. ..++.++++.||++|+|+|+++||+||++.++++++.+|+|++|||+|||+||+|+|.+++||+++
T Consensus 81 aGad~it~H~Ea~-~~~~~~~i~~Ik~~G~kaGlalnP~T~~~~l~~~l~~vD~VLvMsV~PGf~GQ~fi~~~l~KI~~l 159 (229)
T PRK09722 81 AGADFITLHPETI-NGQAFRLIDEIRRAGMKVGLVLNPETPVESIKYYIHLLDKITVMTVDPGFAGQPFIPEMLDKIAEL 159 (229)
T ss_pred cCCCEEEECccCC-cchHHHHHHHHHHcCCCEEEEeCCCCCHHHHHHHHHhcCEEEEEEEcCCCcchhccHHHHHHHHHH
Confidence 9999999999962 357899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcc-cccC-CCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS-AVFG-AKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGS-aIf~-a~dp~~~~~~l~~~~~ 275 (281)
|++++++++++.|+||||||.+|++++.++|||++|+|| +||+ .+|+.+.++++++.++
T Consensus 160 r~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V~Gss~iF~~~~d~~~~i~~l~~~~~ 220 (229)
T PRK09722 160 KALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFIVGTSGLFNLDEDIDEAWDIMTAQIE 220 (229)
T ss_pred HHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEEChHHHcCCCCCHHHHHHHHHHHHH
Confidence 999998888899999999999999999999999999995 5998 5789999999988654
|
|
| >PRK08005 epimerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-65 Score=451.58 Aligned_cols=208 Identities=31% Similarity=0.460 Sum_probs=199.6
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
++|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||++++++||+.++.|+|+||||.||++|++.++++
T Consensus 1 ~~i~pSil~ad~~~l~~el~~l~~~g~d~lHiDvMDG~FVPN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~ 80 (210)
T PRK08005 1 MILHPSLASADPLRYAEALTALHDAPLGSLHLDIEDTSFINNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAI 80 (210)
T ss_pred CEEEeehhhCCHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||+||||+|+ ..++.++++.||++|+++|+++||+||++.++++++.+|+|++|+|+|||+||+|+|.+++||+++|
T Consensus 81 gad~It~H~Ea--~~~~~~~l~~Ik~~G~k~GlAlnP~Tp~~~i~~~l~~vD~VlvMsV~PGf~GQ~f~~~~~~KI~~l~ 158 (210)
T PRK08005 81 RPGWIFIHAES--VQNPSEILADIRAIGAKAGLALNPATPLLPYRYLALQLDALMIMTSEPDGRGQQFIAAMCEKVSQSR 158 (210)
T ss_pred CCCEEEEcccC--ccCHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHHhcCEEEEEEecCCCccceecHHHHHHHHHHH
Confidence 99999999996 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+++++ ..|+||||||.+|+++++++|||++|+||+||+++|+++.+++|.
T Consensus 159 ~~~~~----~~I~VDGGI~~~~i~~l~~aGad~~V~GsaiF~~~d~~~~~~~~~ 208 (210)
T PRK08005 159 EHFPA----AECWADGGITLRAARLLAAAGAQHLVIGRALFTTANYDVTLSQFT 208 (210)
T ss_pred Hhccc----CCEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHh
Confidence 99864 359999999999999999999999999999999889988887764
|
|
| >PRK08883 ribulose-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-65 Score=455.41 Aligned_cols=216 Identities=49% Similarity=0.817 Sum_probs=208.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++||+++++++|+. ++.++||||||.||++|++.++++
T Consensus 1 ~i~pSil~ad~~~l~~~i~~l~~~g~~~lH~DvmDG~Fvpn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~ 80 (220)
T PRK08883 1 LIAPSILSADFARLGEDVEKVLAAGADVVHFDVMDNHYVPNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKA 80 (220)
T ss_pred CcchhhhhcCHHHHHHHHHHHHHcCCCEEEEecccCcccCccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHh
Confidence 4899999999999999999999999999999999999999999999999999998 799999999999999999999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||+|+||+|+ ..++.++++.||++|+++|+++||+||++.++++++.+|+|++|||+|||+||+|+|.+++||++++
T Consensus 81 gad~i~~H~Ea--~~~~~~~l~~ik~~g~k~GlalnP~Tp~~~i~~~l~~~D~vlvMtV~PGfgGq~fi~~~lekI~~l~ 158 (220)
T PRK08883 81 GASMITFHVEA--SEHVDRTLQLIKEHGCQAGVVLNPATPLHHLEYIMDKVDLILLMSVNPGFGGQSFIPHTLDKLRAVR 158 (220)
T ss_pred CCCEEEEcccC--cccHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCCeEEEEEecCCCCCceecHhHHHHHHHHH
Confidence 99999999996 5789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+++++++++++|+||||||++|++.+.++|||++|+||+||+++|++++++++++.+++
T Consensus 159 ~~~~~~~~~~~I~vdGGI~~eni~~l~~aGAd~vVvGSaIf~~~d~~~~i~~l~~~~~~ 217 (220)
T PRK08883 159 KMIDESGRDIRLEIDGGVKVDNIREIAEAGADMFVAGSAIFGQPDYKAVIDEMRAELAK 217 (220)
T ss_pred HHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 99988888899999999999999999999999999999999999999999999987654
|
|
| >PRK14057 epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-65 Score=457.98 Aligned_cols=215 Identities=28% Similarity=0.465 Sum_probs=206.8
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.+.|+|||||+|+.+|+++++++++.|+||+|+|||||+||||++||++++++||+ +.|+|+||||.||++|++.|++
T Consensus 19 ~~~IspSil~aD~~~L~~el~~l~~~g~d~lHiDVMDG~FVPNitfGp~~i~~i~~--~~p~DvHLMV~~P~~~i~~~~~ 96 (254)
T PRK14057 19 SYPLSVGILAGQWIALHRYLQQLEALNQPLLHLDLMDGQFCPQFTVGPWAVGQLPQ--TFIKDVHLMVADQWTAAQACVK 96 (254)
T ss_pred CCceEeehhhcCHHHHHHHHHHHHHCCCCEEEEeccCCccCCccccCHHHHHHhcc--CCCeeEEeeeCCHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999987 5899999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCC---------cEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGA---------KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~---------k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|||+|+||+|+ ..++.++++.||++|+ ++|+++||+||++.++++++.+|+|++|||+|||+||+|+|
T Consensus 97 aGad~It~H~Ea--~~~~~~~l~~Ir~~G~k~~~~~~~~kaGlAlnP~Tp~e~i~~~l~~vD~VLvMtV~PGfgGQ~Fi~ 174 (254)
T PRK14057 97 AGAHCITLQAEG--DIHLHHTLSWLGQQTVPVIGGEMPVIRGISLCPATPLDVIIPILSDVEVIQLLAVNPGYGSKMRSS 174 (254)
T ss_pred hCCCEEEEeecc--ccCHHHHHHHHHHcCCCcccccccceeEEEECCCCCHHHHHHHHHhCCEEEEEEECCCCCchhccH
Confidence 999999999996 4789999999999997 59999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++||+++|++++++++++.|+||||||.+|++++.++|||++|+||+||+.+|+++.+++|++.+.
T Consensus 175 ~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~GSalF~~~d~~~~i~~l~~~~~ 242 (254)
T PRK14057 175 DLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVSGSALFRDDRLVENTRSWRAMFK 242 (254)
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEEChHhhCCCCHHHHHHHHHHHHh
Confidence 99999999999999988889999999999999999999999999999999998899999999997654
|
|
| >KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-64 Score=431.38 Aligned_cols=217 Identities=47% Similarity=0.730 Sum_probs=206.2
Q ss_pred CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCC--CeeEEEEecChhhHHHH
Q 023494 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL--PLDVHLMIVEPEQRVPD 133 (281)
Q Consensus 56 ~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~--~idaHLmv~dp~~~i~~ 133 (281)
.+.+|+||||++|+.||+++.++++++|+||||+||||||||||++||+.+|+.||++++. +||+||||.+|++|++.
T Consensus 3 ~~~~I~PSIL~~dfanL~~e~~~~l~~GadwlHlDVMDg~FVpNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~ 82 (224)
T KOG3111|consen 3 VKPKIAPSILSSDFANLAAECKKMLDAGADWLHLDVMDGHFVPNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQ 82 (224)
T ss_pred cCceechhhhccchHHHHHHHHHHHHcCCCeEEEeeecccccCCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHH
Confidence 3578999999999999999999999999999999999999999999999999999998766 59999999999999999
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
++++||+.+|||+|+ ++.+.++++.||+.|+++|++|+|.||++.++++++.+|++|+|||+|||+||+|.++++.|+
T Consensus 83 ~a~agas~~tfH~E~--~q~~~~lv~~ir~~Gmk~G~alkPgT~Ve~~~~~~~~~D~vLvMtVePGFGGQkFme~mm~KV 160 (224)
T KOG3111|consen 83 MAKAGASLFTFHYEA--TQKPAELVEKIREKGMKVGLALKPGTPVEDLEPLAEHVDMVLVMTVEPGFGGQKFMEDMMPKV 160 (224)
T ss_pred HHhcCcceEEEEEee--ccCHHHHHHHHHHcCCeeeEEeCCCCcHHHHHHhhccccEEEEEEecCCCchhhhHHHHHHHH
Confidence 999999999999996 577999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcCc
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~~ 278 (281)
+++|+..+ +..|+||||++++|+..+.+||||.+|+||++|++.||.+.++.||+....+.
T Consensus 161 ~~lR~kyp----~l~ievDGGv~~~ti~~~a~AGAN~iVaGsavf~a~d~~~vi~~lr~~v~~a~ 221 (224)
T KOG3111|consen 161 EWLREKYP----NLDIEVDGGVGPSTIDKAAEAGANMIVAGSAVFGAADPSDVISLLRNSVEKAA 221 (224)
T ss_pred HHHHHhCC----CceEEecCCcCcchHHHHHHcCCCEEEecceeecCCCHHHHHHHHHHHHhhhh
Confidence 99996654 57899999999999999999999999999999999999999999999776543
|
|
| >PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-64 Score=440.83 Aligned_cols=201 Identities=51% Similarity=0.884 Sum_probs=184.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
+|+|||+|+|+.+|++++++++++|+||+|+|||||+||||++||++.+++||+.+++|+|+||||.||.+|++.+.++|
T Consensus 1 kI~pSil~ad~~~l~~~i~~l~~~g~d~lHiDiMDg~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g 80 (201)
T PF00834_consen 1 KISPSILSADFLNLEEEIKRLEEAGADWLHIDIMDGHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAG 80 (201)
T ss_dssp EEEEBGGGS-GGGHHHHHHHHHHTT-SEEEEEEEBSSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT
T ss_pred CeehhhhhCCHHHHHHHHHHHHHcCCCEEEEeecccccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+|+|+||.|+ ..++.++++.+|++|+++|+++||.||++.++++++.+|+|++|+|+|||+||+|+|++++||+++++
T Consensus 81 ~~~i~~H~E~--~~~~~~~i~~ik~~g~k~GialnP~T~~~~~~~~l~~vD~VlvMsV~PG~~Gq~f~~~~~~KI~~l~~ 158 (201)
T PF00834_consen 81 ADYITFHAEA--TEDPKETIKYIKEAGIKAGIALNPETPVEELEPYLDQVDMVLVMSVEPGFGGQKFIPEVLEKIRELRK 158 (201)
T ss_dssp -SEEEEEGGG--TTTHHHHHHHHHHTTSEEEEEE-TTS-GGGGTTTGCCSSEEEEESS-TTTSSB--HGGHHHHHHHHHH
T ss_pred CCEEEEcccc--hhCHHHHHHHHHHhCCCEEEEEECCCCchHHHHHhhhcCEEEEEEecCCCCcccccHHHHHHHHHHHH
Confidence 9999999995 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+++++|+++.|+||||||.+|++.+.++|||++|+||+||+++
T Consensus 159 ~~~~~~~~~~I~vDGGI~~~~~~~~~~aGad~~V~Gs~iF~~~ 201 (201)
T PF00834_consen 159 LIPENGLDFEIEVDGGINEENIKQLVEAGADIFVAGSAIFKAD 201 (201)
T ss_dssp HHHHHTCGSEEEEESSESTTTHHHHHHHT--EEEESHHHHTS-
T ss_pred HHHhcCCceEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCC
Confidence 9999999999999999999999999999999999999999863
|
1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D .... |
| >PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=406.04 Aligned_cols=214 Identities=43% Similarity=0.724 Sum_probs=202.6
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~ 135 (281)
+.+|+|||+|+|+.+|+++++.+++.|+|++|+|||||+||||++||++++++||+.+ ++++|+|||++||++|++.++
T Consensus 6 ~~~i~pSi~~~d~~~l~~~~~~l~~~~~~~~H~DimDg~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~ 85 (228)
T PTZ00170 6 KAIIAPSILAADFSKLADEAQDVLSGGADWLHVDVMDGHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFA 85 (228)
T ss_pred CCEEehhHhhcCHHHHHHHHHHHHHcCCCEEEEecccCccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHH
Confidence 3579999999999999999999999999999999999999999999999999999985 899999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh--ccCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL--DVVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l--~~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
++|||++|||+|+. ..++.++++.+|++|+++|++++|.|+++.+++++ +.+|+|++|+++||++||+|.+.+++||
T Consensus 86 ~~Gad~itvH~ea~-~~~~~~~l~~ik~~G~~~gval~p~t~~e~l~~~l~~~~vD~Vl~m~v~pG~~gq~~~~~~~~ki 164 (228)
T PTZ00170 86 KAGASQFTFHIEAT-EDDPKAVARKIREAGMKVGVAIKPKTPVEVLFPLIDTDLVDMVLVMTVEPGFGGQSFMHDMMPKV 164 (228)
T ss_pred HcCCCEEEEeccCC-chHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHccchhhhHHhhhcccCCCCcEecHHHHHHH
Confidence 99999999999973 33489999999999999999999999999999999 7899999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+++++++++ +.|+|||||+++|++.++++|||++|+||+||+++||+++++++++.++
T Consensus 165 ~~~~~~~~~----~~I~VdGGI~~~ti~~~~~aGad~iVvGsaI~~a~d~~~~~~~i~~~~~ 222 (228)
T PTZ00170 165 RELRKRYPH----LNIQVDGGINLETIDIAADAGANVIVAGSSIFKAKDRKQAIELLRESVQ 222 (228)
T ss_pred HHHHHhccc----CeEEECCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHHHH
Confidence 999998653 6799999999999999999999999999999999999999999998765
|
|
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=362.93 Aligned_cols=226 Identities=63% Similarity=0.953 Sum_probs=213.6
Q ss_pred ccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH
Q 023494 51 DKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130 (281)
Q Consensus 51 ~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~ 130 (281)
|+|++..+.|+||++|+|+.++.++++.++++|++|+|+|+|||+|+||++||++.+++||+.++.++++||||+||.+|
T Consensus 1 ~~~~~~~~~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~ 80 (229)
T PLN02334 1 DKFSKNDAIIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDY 80 (229)
T ss_pred CCcccCCceEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHH
Confidence 67899899999999999999999999999999999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHcCCCEEEEccc-ccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--CCEEEEEeecCCCCCCccch
Q 023494 131 VPDFIKAGADIVSVHCE-QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~E-a~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--vD~IlvmsV~pG~~GQ~f~~ 207 (281)
++.+.++|||+|+||.| +. .+++.+.++.+++.|+++|++++|+|+.+.++++++. +|||++|+++||+++|+|.+
T Consensus 81 ~~~~~~~gad~v~vH~~q~~-~d~~~~~~~~i~~~g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~pg~~~~~~~~ 159 (229)
T PLN02334 81 VPDFAKAGASIFTFHIEQAS-TIHLHRLIQQIKSAGMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVEPGFGGQSFIP 159 (229)
T ss_pred HHHHHHcCCCEEEEeecccc-chhHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEecCCCccccCH
Confidence 99999999999999999 22 4678899999999999999999999999999999998 99999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcCccCC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~~~~~ 281 (281)
..+++|+++++++.+ .+|+|||||+++|++++.++|||++|+||+||+++||++++++|++.++++.||+
T Consensus 160 ~~~~~i~~~~~~~~~----~~I~a~GGI~~e~i~~l~~aGad~vvvgsai~~~~d~~~~~~~l~~~~~~~~~~~ 229 (229)
T PLN02334 160 SMMDKVRALRKKYPE----LDIEVDGGVGPSTIDKAAEAGANVIVAGSAVFGAPDYAEVISGLRASVEKAAVAV 229 (229)
T ss_pred HHHHHHHHHHHhCCC----CcEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHHHHhhccC
Confidence 999999999987542 5899999999999999999999999999999999999999999999998888774
|
|
| >PRK05581 ribulose-phosphate 3-epimerase; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=300.01 Aligned_cols=216 Identities=61% Similarity=0.992 Sum_probs=199.3
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.++|+|||++.|+.++.++++.+.+.|++++|+|+|||.|+||++++++.++++++.++.++++|||++||.++++.+.+
T Consensus 3 ~~~~~~s~~~~~~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~ 82 (220)
T PRK05581 3 MVLIAPSILSADFARLGEEVKAVEAAGADWIHVDVMDGHFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAK 82 (220)
T ss_pred CcEEEcchhcCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHH
Confidence 34699999999999999999999999999999999999999999999999999998755789999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|+|++++|.+. .++..+.++.+++.|+++|++++|+|+.+.++++...+|||++|+++||.+||.|.+..+++++++
T Consensus 83 ~g~d~v~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~ 160 (220)
T PRK05581 83 AGADIITFHVEA--SEHIHRLLQLIKSAGIKAGLVLNPATPLEPLEDVLDLLDLVLLMSVNPGFGGQKFIPEVLEKIREL 160 (220)
T ss_pred cCCCEEEEeecc--chhHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHhhCCEEEEEEECCCCCcccccHHHHHHHHHH
Confidence 999999999995 467888999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
++..+.++.++.|++||||+++|++++.++|+|++|+||+||+++||.++++++++.+
T Consensus 161 ~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvgSai~~~~d~~~~~~~~~~~~ 218 (220)
T PRK05581 161 RKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAGSAVFGAPDYKEAIDSLRAEL 218 (220)
T ss_pred HHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHh
Confidence 9887653333568899999999999999999999999999999999999999998753
|
|
| >TIGR01163 rpe ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-42 Score=298.98 Aligned_cols=210 Identities=62% Similarity=1.007 Sum_probs=196.6
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|+|||+|+|+.++.++++.+.+.|+|+||+|+|||+|+||++++++.+++||+.++.++++|+|++++.+|++.+.++|+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~g~d~i~~~~~Dg~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~ga 80 (210)
T TIGR01163 1 IAPSILSADFARLGEEVKAVEEAGADWIHVDVMDGHFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGA 80 (210)
T ss_pred CcchhhcCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCC
Confidence 68999999999999999999999999999999999999999999999999998777889999999999999999999999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
|++++|.+. .++..+.++.+|+.|+++++.++++|+.+.++++...+|+|++|+++||.+||.|.+..++++++++++
T Consensus 81 dgv~vh~~~--~~~~~~~~~~~~~~g~~~~~~~~~~t~~e~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~i~~~ 158 (210)
T TIGR01163 81 DIITVHPEA--SEHIHRLLQLIKDLGAKAGIVLNPATPLEFLEYVLPDVDLVLLMSVNPGFGGQKFIPDTLEKIREVRKM 158 (210)
T ss_pred CEEEEccCC--chhHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCCEEEEEEEcCCCCcccccHHHHHHHHHHHHH
Confidence 999999985 456788999999999999999999999999999988899999999999999999999999999999998
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
.++.+.++++.++||||++|++++++.|||++|+||+||+++||++++++++
T Consensus 159 ~~~~~~~~~i~v~GGI~~env~~l~~~gad~iivgsai~~~~d~~~~~~~~~ 210 (210)
T TIGR01163 159 IDENGLSILIEVDGGVNDDNARELAEAGADILVAGSAIFGADDYKEVIRSLR 210 (210)
T ss_pred HHhcCCCceEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHhC
Confidence 8765555789999999999999999999999999999999999999988763
|
This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants. |
| >cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=284.27 Aligned_cols=211 Identities=60% Similarity=0.946 Sum_probs=196.8
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
+|+|||+|+|+.++.++++.+.++|++++|+|++||.|.|+..+|++.+++|++.++.++++|||++||.++++.+.++|
T Consensus 1 ~~~~~~~~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g 80 (211)
T cd00429 1 KIAPSILSADFANLGEELKRLEEAGADWIHIDVMDGHFVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAG 80 (211)
T ss_pred CceeeeecCCHHHHHHHHHHHHHcCCCEEEEecccCCCCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcC
Confidence 48999999999999999999999999999999999999999999999999999866788999999999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+|++++|.+. .++..+.++.++++|+++|+.++++|+.+.++++...+||+++++++||.+|+.+.+..+++++++++
T Consensus 81 ~dgv~vh~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~ 158 (211)
T cd00429 81 ADIITFHAEA--TDHLHRTIQLIKELGMKAGVALNPGTPVEVLEPYLDEVDLVLVMSVNPGFGGQKFIPEVLEKIRKLRE 158 (211)
T ss_pred CCEEEECccc--hhhHHHHHHHHHHCCCeEEEEecCCCCHHHHHHHHhhCCEEEEEEECCCCCCcccCHHHHHHHHHHHH
Confidence 9999999985 46678899999999999999999989988888888889999999999999999999999999999999
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+..+++.+.++.++|||+++|++++.++|||++|+||+||+++||.+++++++
T Consensus 159 ~~~~~~~~~pi~v~GGI~~env~~~~~~gad~iivgsai~~~~~~~~~~~~~~ 211 (211)
T cd00429 159 LIPENNLNLLIEVDGGINLETIPLLAEAGADVLVAGSALFGSDDYAEAIKELR 211 (211)
T ss_pred HHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEEECHHHhCCCCHHHHHHHhC
Confidence 98766666899999999999999999999999999999999999999988763
|
This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis. |
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-33 Score=263.96 Aligned_cols=197 Identities=21% Similarity=0.301 Sum_probs=173.6
Q ss_pred EeccCccCHHHHHHHHHHcC---CCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHc
Q 023494 64 ILSANFAKLGEQVKAVELAG---CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKA 137 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G---~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~a 137 (281)
++|+|..+++++++.+.+.+ .+|+.+ | .|.+ .||++++++||+. +++++++|||+.||++| ++.++++
T Consensus 176 ~vALD~~~~~~A~~i~~~l~~~~~~~iKv----G--~~L~~~~G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~a 249 (391)
T PRK13307 176 QVALDLPDLEEVERVLSQLPKSDHIIIEA----G--TPLIKKFGLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADA 249 (391)
T ss_pred EEecCCCCHHHHHHHHHhcccccceEEEE----C--HHHHHHhCHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhc
Confidence 57789999999999888764 344555 5 3655 9999999999997 88999999999999999 7889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhccCCEEEEEe-ecCCCCCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDVVDLVLIMS-VNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~~vD~Ilvms-V~pG~~GQ~f~~~~l~kI~~ 215 (281)
|||++|||+|+ ...++.++++.+|++|+++|+ ++||.|+.+.++++...+|+|++|+ ++|| +| +..+++|++
T Consensus 250 GAD~vTVH~ea-~~~ti~~ai~~akk~GikvgVD~lnp~tp~e~i~~l~~~vD~Vllht~vdp~--~~---~~~~~kI~~ 323 (391)
T PRK13307 250 TADAVVISGLA-PISTIEKAIHEAQKTGIYSILDMLNVEDPVKLLESLKVKPDVVELHRGIDEE--GT---EHAWGNIKE 323 (391)
T ss_pred CCCEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEEcCCCCHHHHHHHhhCCCCEEEEccccCCC--cc---cchHHHHHH
Confidence 99999999997 356799999999999999999 9999999999999988899999997 8888 33 336678888
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+|++ +.+++|+|||||+.+++++++++|||++|+||+||+++||+++++++++.+++
T Consensus 324 ikk~----~~~~~I~VdGGI~~eti~~l~~aGADivVVGsaIf~a~Dp~~aak~l~~~i~~ 380 (391)
T PRK13307 324 IKKA----GGKILVAVAGGVRVENVEEALKAGADILVVGRAITKSKDVRRAAEDFLNKLKP 380 (391)
T ss_pred HHHh----CCCCcEEEECCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHhhcc
Confidence 8877 34578999999999999999999999999999999999999999999998754
|
|
| >PRK13306 ulaD 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-32 Score=245.21 Aligned_cols=203 Identities=18% Similarity=0.229 Sum_probs=177.1
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhHHH-HHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP-DFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~-~~~~aG 138 (281)
+-++|+|+.+++++++.+++.+ +. +|+..-+ .|.+ ++|+..++.||+. +++++++|||+.|+.+++. .++++|
T Consensus 5 ~l~vALD~~~~~~a~~l~~~l~-~~--v~~~kvG-~~l~~~~G~~~i~~lk~~~~~~~v~~DLK~~Di~~~v~~~~~~~G 80 (216)
T PRK13306 5 LLQIALDNQDLESAIEDAKKVA-EE--VDIIEVG-TILLLAEGMKAVRVLRALYPDKIIVADTKIADAGKILAKMAFEAG 80 (216)
T ss_pred cEEEEecCCCHHHHHHHHHHcc-cc--CCEEEEC-hHHHHHhCHHHHHHHHHHCCCCEEEEEEeecCCcHHHHHHHHHCC
Confidence 4578889999999998887652 22 3444423 3554 9999999999997 7899999999999999976 788999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|++|+|+++ ..+++.++++.+++.|+++|++++|.++.+.++++++ ..|+++.|+++||++||.|.|+.+++|+++
T Consensus 81 ad~vTvH~~a-~~~~i~~~~~~~~~~g~~~~V~llts~~~~~l~~~~~~~~~~~vl~~a~~~~~~G~v~s~~~~~~ir~~ 159 (216)
T PRK13306 81 ADWVTVICAA-HIPTIKAALKVAKEFNGEIQIELYGNWTWEQAQQWRDAGISQVIYHRSRDAQLAGVAWGEKDLNKVKKL 159 (216)
T ss_pred CCEEEEeCCC-CHHHHHHHHHHHHHcCCEEEEEECCCCCHHHHHHHHcCChhhhhhhhhhhhhhcCCCCCHHHHHHHHHH
Confidence 9999999997 3667999999999999999999999999999987776 478999999999999999999999999888
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++ .++.|+|||||++++++.+.++|||++|+||+||+++||.++++++++.++
T Consensus 160 ~~------~~~~i~V~gGI~~~~~~~~~~~~ad~~VvGr~I~~a~dp~~a~~~i~~~i~ 212 (216)
T PRK13306 160 SD------MGFKVSVTGGLVVEDLKLFKGIPVKTFIAGRAIRGAADPAAAARAFKDEIA 212 (216)
T ss_pred hc------CCCeEEEcCCCCHhhHHHHhcCCCCEEEECCcccCCCCHHHHHHHHHHHHH
Confidence 65 145699999999999999999999999999999999999999999998764
|
|
| >cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-32 Score=245.08 Aligned_cols=190 Identities=22% Similarity=0.273 Sum_probs=172.4
Q ss_pred EeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccccc-----------CCHHHHHHcCcCCCCCeeE
Q 023494 60 VSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPNIT-----------IGPLVVDALRPVTDLPLDV 120 (281)
Q Consensus 60 i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn~~-----------~G~~~I~~ir~~t~~~ida 120 (281)
+.|-+.+.|+. ++.+.++.++++|+|++|+| +|||+|++|.+ ++++.++++|+.++.| +
T Consensus 2 li~y~~~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~p--v 79 (242)
T cd04724 2 LIPYITAGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIP--I 79 (242)
T ss_pred cEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCC--E
Confidence 56788889875 78888999999999999999 99999999866 8999999999876677 6
Q ss_pred EEEec-Ch------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEE
Q 023494 121 HLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVL 192 (281)
Q Consensus 121 HLmv~-dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Il 192 (281)
|||+. || ++|++.+.++|+|++++|.+ +.++..++++.+|++|++.++.++|+|+.++++++++ ..|+|+
T Consensus 80 ~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl--~~ee~~~~~~~~~~~g~~~i~~i~P~T~~~~i~~i~~~~~~~vy 157 (242)
T cd04724 80 VLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDL--PPEEAEEFREAAKEYGLDLIFLVAPTTPDERIKKIAELASGFIY 157 (242)
T ss_pred EEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCCCEE
Confidence 89998 98 78999999999999999766 3467889999999999999999999999999999998 799999
Q ss_pred EEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 193 IMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 193 vmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|++.||+++|. |.+...++|+++|+.. +.+|.|||||+ .++++.+.++ ||++|+||+||+
T Consensus 158 ~~s~~g~tG~~~~~~~~~~~~i~~lr~~~-----~~pI~vggGI~~~e~~~~~~~~-ADgvVvGSaiv~ 220 (242)
T cd04724 158 YVSRTGVTGARTELPDDLKELIKRIRKYT-----DLPIAVGFGISTPEQAAEVAKY-ADGVIVGSALVK 220 (242)
T ss_pred EEeCCCCCCCccCCChhHHHHHHHHHhcC-----CCcEEEEccCCCHHHHHHHHcc-CCEEEECHHHHH
Confidence 999999999988 8898999999999863 47999999999 6699999999 999999999986
|
TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan. |
| >PRK13813 orotidine 5'-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.5e-32 Score=240.04 Aligned_cols=203 Identities=22% Similarity=0.281 Sum_probs=171.5
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc-ccCCHHHHHHcCcCCCCCeeEEEE-ec-ChhhHHHHHHHcCCC
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLM-IV-EPEQRVPDFIKAGAD 140 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~~~G~~~I~~ir~~t~~~idaHLm-v~-dp~~~i~~~~~aGAd 140 (281)
++|+|+.++++.++.+++.+ +. +|+..-++ |. .+||+++++.||+.+++++|+|+| +. ++..+++.++++|||
T Consensus 7 ~~alD~~~~~~~~~~~~~~~-~~--~~~vk~g~-~l~~~~G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad 82 (215)
T PRK13813 7 ILALDVTDRERALKIAEELD-DY--VDAIKVGW-PLVLASGLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAW 82 (215)
T ss_pred EEEeCCCCHHHHHHHHHhcc-cc--CCEEEEcH-HHHHhhCHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCC
Confidence 47889999999999998773 42 35555343 44 489999999999988889999997 54 555566899999999
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHh
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMC 220 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~ 220 (281)
+++||+|+. .+++.++++.++++|+++|++++|.+ .+.++.+.+.+|.++.|+++||++||+|.+..+++|+++++..
T Consensus 83 ~vtvh~e~g-~~~l~~~i~~~~~~g~~~~v~~~~~~-~~~~~~~~~~~~~v~~m~~e~G~~g~~~~~~~~~~i~~l~~~~ 160 (215)
T PRK13813 83 GIIVHGFTG-RDSLKAVVEAAAESGGKVFVVVEMSH-PGALEFIQPHADKLAKLAQEAGAFGVVAPATRPERVRYIRSRL 160 (215)
T ss_pred EEEEcCcCC-HHHHHHHHHHHHhcCCeEEEEEeCCC-CCCCCCHHHHHHHHHHHHHHhCCCeEEECCCcchhHHHHHHhc
Confidence 999999973 45688999999999999999999976 4445555667888899999999999999998899999998887
Q ss_pred hhcCCCCeEEEecCCChhc--HHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 221 LEKGVNPWIEVDGGVGPKN--AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 221 ~~~~~~~~I~VDGGI~~e~--i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+. ++.+ |||||++++ ++.+.++|||++|+||+||+++||.+.++++++.+++
T Consensus 161 ~~---~~~i-vdgGI~~~g~~~~~~~~aGad~iV~Gr~I~~~~d~~~~~~~l~~~~~~ 214 (215)
T PRK13813 161 GD---ELKI-ISPGIGAQGGKAADAIKAGADYVIVGRSIYNAADPREAAKAINEEIRG 214 (215)
T ss_pred CC---CcEE-EeCCcCCCCCCHHHHHHcCCCEEEECcccCCCCCHHHHHHHHHHHHhc
Confidence 53 4667 999999985 9999999999999999999999999999999988764
|
|
| >TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=222.69 Aligned_cols=197 Identities=20% Similarity=0.266 Sum_probs=169.1
Q ss_pred EeccCccCHHHHHHHHHHc--CCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCC
Q 023494 64 ILSANFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGA 139 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGA 139 (281)
++|+|..++++.++.++.. |++++++ ++.-+..+|++.++.||+. ++..+.+|+|+.||+.+ ++.+.++||
T Consensus 3 ~~alD~~~~~~a~~~~~~l~~~v~~iev-----~~~l~~~~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Ga 77 (206)
T TIGR03128 3 QLALDLLDIEEALELAEKVADYVDIIEI-----GTPLIKNEGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGA 77 (206)
T ss_pred EEEecCCCHHHHHHHHHHcccCeeEEEe-----CCHHHHHhCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCC
Confidence 5688999999888766644 4444443 3333458899999999986 67789999999999998 899999999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|+|++|+++ +..++.++++.++++|+++++.+ +|.|+.+.++++.+ .+|+| +++||+++|.|.+..+++|++++
T Consensus 78 d~i~vh~~~-~~~~~~~~i~~~~~~g~~~~~~~~~~~t~~~~~~~~~~~g~d~v---~~~pg~~~~~~~~~~~~~i~~l~ 153 (206)
T TIGR03128 78 DIVTVLGVA-DDATIKGAVKAAKKHGKEVQVDLINVKDKVKRAKELKELGADYI---GVHTGLDEQAKGQNPFEDLQTIL 153 (206)
T ss_pred CEEEEeccC-CHHHHHHHHHHHHHcCCEEEEEecCCCChHHHHHHHHHcCCCEE---EEcCCcCcccCCCCCHHHHHHHH
Confidence 999999996 24467899999999999999985 99999988888777 69988 55899999999988899999999
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.++. +.|+|+|||+++|++++.++|||.+++||+||+++||.+.++++++.
T Consensus 154 ~~~~~----~~i~v~GGI~~~n~~~~~~~Ga~~v~vGsai~~~~d~~~~~~~l~~~ 205 (206)
T TIGR03128 154 KLVKE----ARVAVAGGINLDTIPDVIKLGPDIVIVGGAITKAADPAEAARQIRKL 205 (206)
T ss_pred HhcCC----CcEEEECCcCHHHHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHhh
Confidence 88753 67999999999999999999999999999999999999999999875
|
at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase. |
| >PRK13125 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-28 Score=220.20 Aligned_cols=203 Identities=19% Similarity=0.241 Sum_probs=166.0
Q ss_pred ceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEEe------eeCcccccc-------cCCHHHHHHcCcCCCCCeeEEE
Q 023494 58 IIVSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFVPNI-------TIGPLVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 58 ~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiDI------mDG~fvpn~-------~~G~~~I~~ir~~t~~~idaHL 122 (281)
..+.|-+.++|+. +..+.++.+.++ +|.+++.+ .||.-+..- .+ ++.++++|+.+++|+ ||
T Consensus 4 ~~~i~y~~~G~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~-~~~v~~vr~~~~~Pl--~l 79 (244)
T PRK13125 4 PGLVVYLTAGYPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDI-WPLLEEVRKDVSVPI--IL 79 (244)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCc-HHHHHHHhccCCCCE--EE
Confidence 3588999999874 566777778777 99999963 344211110 11 358888988778887 67
Q ss_pred E------ecChhhHHHHHHHcCCCEEEEc---ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 123 M------IVEPEQRVPDFIKAGADIVSVH---CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 123 m------v~dp~~~i~~~~~aGAd~Itvh---~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
| +.+|.+|++.+.++|+|++++| .|+ .+++.++++.++++|+++|++++|.|+.++++++++..|.+++
T Consensus 80 M~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~--~~~~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~~~~~~~~l~ 157 (244)
T PRK13125 80 MTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDY--PDDLEKYVEIIKNKGLKPVFFTSPKFPDLLIHRLSKLSPLFIY 157 (244)
T ss_pred EEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCc--HHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCCEEE
Confidence 7 6799999999999999999999 553 4678899999999999999999999999999999999999999
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccC---CCCHHHHHHH
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFG---AKDYAEAIKG 269 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~---a~dp~~~~~~ 269 (281)
|+++||++ |+|.+...++++++|++.++ .+|+||||| |+++++.++++|||++|+||+||+ .++.++..+.
T Consensus 158 msv~~~~g-~~~~~~~~~~i~~lr~~~~~----~~i~v~gGI~~~e~i~~~~~~gaD~vvvGSai~~~~~~~~~~~~~~~ 232 (244)
T PRK13125 158 YGLRPATG-VPLPVSVERNIKRVRNLVGN----KYLVVGFGLDSPEDARDALSAGADGVVVGTAFIEELEKNGVESALNL 232 (244)
T ss_pred EEeCCCCC-CCchHHHHHHHHHHHHhcCC----CCEEEeCCcCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHH
Confidence 99999995 58999999999999998753 369999999 899999999999999999999996 3444444444
Q ss_pred HH
Q 023494 270 IK 271 (281)
Q Consensus 270 l~ 271 (281)
++
T Consensus 233 ~~ 234 (244)
T PRK13125 233 LK 234 (244)
T ss_pred HH
Confidence 33
|
|
| >TIGR00262 trpA tryptophan synthase, alpha subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-28 Score=224.11 Aligned_cols=209 Identities=17% Similarity=0.210 Sum_probs=176.0
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcC-CCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPV-TDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~-t~~ 116 (281)
+..+.|-+.+.|+. ...+.++.+.++|+|+|++. +.||..+.. +.-..+.++++|+. ++.
T Consensus 9 ~~~li~y~~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 88 (256)
T TIGR00262 9 EGAFIPFVTAGDPTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNI 88 (256)
T ss_pred CceEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 45699999999874 44566788889999999997 466633311 12245668899876 788
Q ss_pred CeeEEEEecCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC-
Q 023494 117 PLDVHLMIVEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD- 189 (281)
Q Consensus 117 ~idaHLmv~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD- 189 (281)
|++ |||..|| ++|++.+.++|+|++++|.+. .++..++++.+|++|++.+++++|+|+.++++++....+
T Consensus 89 plv-~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp--~ee~~~~~~~~~~~gl~~i~lv~P~T~~eri~~i~~~~~g 165 (256)
T TIGR00262 89 PIG-LLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLP--LEESGDLVEAAKKHGVKPIFLVAPNADDERLKQIAEKSQG 165 (256)
T ss_pred CEE-EEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCC--hHHHHHHHHHHHHCCCcEEEEECCCCCHHHHHHHHHhCCC
Confidence 988 9999999 789999999999999999994 678999999999999999999999999999999999887
Q ss_pred EEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-----C
Q 023494 190 LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-----K 261 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-----~ 261 (281)
+|++|+++ |++||+ |.+...++|+++|+..+ .+|.|+|||+ +++++.+.++|||++|+||+|++. .
T Consensus 166 fiy~vs~~-G~TG~~~~~~~~~~~~i~~lr~~~~-----~pi~vgfGI~~~e~~~~~~~~GADgvVvGSaiv~~~~~~~~ 239 (256)
T TIGR00262 166 FVYLVSRA-GVTGARNRAASALNELVKRLKAYSA-----KPVLVGFGISKPEQVKQAIDAGADGVIVGSAIVKIIEENLN 239 (256)
T ss_pred CEEEEECC-CCCCCcccCChhHHHHHHHHHhhcC-----CCEEEeCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhccC
Confidence 99999997 999986 88999999999998753 4799999998 999999999999999999999962 2
Q ss_pred CHHHHHHHHHHhc
Q 023494 262 DYAEAIKGIKTSK 274 (281)
Q Consensus 262 dp~~~~~~l~~~~ 274 (281)
++++..+.+++.+
T Consensus 240 ~~~~~~~~i~~~~ 252 (256)
T TIGR00262 240 TPEKMLQALEEFV 252 (256)
T ss_pred CHHHHHHHHHHHH
Confidence 6666666666544
|
Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences. |
| >cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS) | Back alignment and domain information |
|---|
Probab=99.96 E-value=8.9e-28 Score=209.67 Aligned_cols=192 Identities=22% Similarity=0.276 Sum_probs=155.1
Q ss_pred EeccCccCHHHHHHHHHHc--CCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCC
Q 023494 64 ILSANFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGA 139 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGA 139 (281)
++|+|..++++.++.++.. +++++++ ++.-...+|++.++.+|+. ++.++++|+|+.||.++ ++.+.++||
T Consensus 4 ~~a~d~~~~~~~~~~~~~l~~~i~~iei-----g~~~~~~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGa 78 (202)
T cd04726 4 QVALDLLDLEEALELAKKVPDGVDIIEA-----GTPLIKSEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGA 78 (202)
T ss_pred EEEEcCCCHHHHHHHHHHhhhcCCEEEc-----CCHHHHHhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCC
Confidence 5677998888777665543 1555544 3222358899999999986 78999999999999876 688999999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEE-ECCCCCHHHHHHhhccCCEEEEEeecCCCCCCcc-chhHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSF-IESQVKKISDLR 217 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla-i~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f-~~~~l~kI~~lr 217 (281)
|++++|.++. ..++.++++.++++|++++++ ++|.|+.+..+.+...+|+|.+ +|++.++.+ .+...+++++++
T Consensus 79 d~i~~h~~~~-~~~~~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~~~~~d~v~~---~~~~~~~~~~~~~~~~~i~~~~ 154 (202)
T cd04726 79 DIVTVLGAAP-LSTIKKAVKAAKKYGKEVQVDLIGVEDPEKRAKLLKLGVDIVIL---HRGIDAQAAGGWWPEDDLKKVK 154 (202)
T ss_pred CEEEEEeeCC-HHHHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHHHHCCCCEEEE---cCcccccccCCCCCHHHHHHHH
Confidence 9999999963 346788999999999999996 9999999888744447999876 455554444 456677888877
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
+. .+++|.++|||+++|++++.++|||++|+||+||+++||.+.+++
T Consensus 155 ~~-----~~~~i~~~GGI~~~~i~~~~~~Gad~vvvGsai~~~~d~~~~~~~ 201 (202)
T cd04726 155 KL-----LGVKVAVAGGITPDTLPEFKKAGADIVIVGRAITGAADPAEAARE 201 (202)
T ss_pred hh-----cCCCEEEECCcCHHHHHHHHhcCCCEEEEeehhcCCCCHHHHHhc
Confidence 65 247899999999999999999999999999999999999888764
|
KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates. |
| >COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-26 Score=201.63 Aligned_cols=201 Identities=24% Similarity=0.332 Sum_probs=164.3
Q ss_pred eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCCCE
Q 023494 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADI 141 (281)
Q Consensus 65 la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGAd~ 141 (281)
+|+|+.+|+++++.+.+. .++ +||.+-+ +|.+ .+|++.|+.||+. |+.++.+|+++.|.+.+ .++++++|||+
T Consensus 8 vALD~~~l~~Ai~~a~~v-~~~--~diiEvG-TpLik~eG~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~ 83 (217)
T COG0269 8 VALDLLDLEEAIEIAEEV-ADY--VDIIEVG-TPLIKAEGMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADW 83 (217)
T ss_pred eeecccCHHHHHHHHHHh-hhc--ceEEEeC-cHHHHHhhHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCE
Confidence 578999999999999987 555 5777744 4655 9999999999996 89999999999999987 67889999999
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhh-ccCCEEEEEe-ecCCCCCCccchhHHHHHHHHHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVL-DVVDLVLIMS-VNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l-~~vD~Ilvms-V~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+|+.+-+ +..|+..+++.++++|+.+.+.+ +..++.+..+.+- -.+|++.++. .+.-..|+.|-...+++++++.+
T Consensus 84 ~tV~g~A-~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~~~~~~l~~~gvd~~~~H~g~D~q~~G~~~~~~~l~~ik~~~~ 162 (217)
T COG0269 84 VTVLGAA-DDATIKKAIKVAKEYGKEVQIDLIGVWDPEQRAKWLKELGVDQVILHRGRDAQAAGKSWGEDDLEKIKKLSD 162 (217)
T ss_pred EEEEecC-CHHHHHHHHHHHHHcCCeEEEEeecCCCHHHHHHHHHHhCCCEEEEEecccHhhcCCCccHHHHHHHHHhhc
Confidence 9999998 58899999999999999999965 4445555555544 3589987742 12222355554455666665554
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+ ++.++|.|||++++++.+...|+++||+||+|+++.||.++++++++.++.
T Consensus 163 ~------g~~vAVaGGI~~~~i~~~~~~~~~ivIvGraIt~a~dp~~~a~~~~~~i~~ 214 (217)
T COG0269 163 L------GAKVAVAGGITPEDIPLFKGIGADIVIVGRAITGAKDPAEAARKFKEEIDK 214 (217)
T ss_pred c------CceEEEecCCCHHHHHHHhcCCCCEEEECchhcCCCCHHHHHHHHHHHHhc
Confidence 3 368999999999999999999999999999999999999999999998754
|
|
| >CHL00200 trpA tryptophan synthase alpha subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.1e-24 Score=193.39 Aligned_cols=206 Identities=15% Similarity=0.205 Sum_probs=164.1
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcCCCCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPVTDLP 117 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~t~~~ 117 (281)
+..+.|-+.+.|+. ...+.++.+.++|+|.|++. +.||..+.. +.-..+.++++|+..+.|
T Consensus 14 ~~ali~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p 93 (263)
T CHL00200 14 QCALIPFITAGDPDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAP 93 (263)
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCC
Confidence 45699999999874 45567788889999999997 678844332 113467788888766778
Q ss_pred eeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC-
Q 023494 118 LDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD- 189 (281)
Q Consensus 118 idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD- 189 (281)
+. ||+ .|| ++|++.+.++|+|++++|.+ +.++..++++.++++|+..+..++|+|+.++++.+....+
T Consensus 94 ~v--lm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDL--P~ee~~~~~~~~~~~gi~~I~lv~PtT~~eri~~i~~~a~g 169 (263)
T CHL00200 94 IV--IFTYYNPVLHYGINKFIKKISQAGVKGLIIPDL--PYEESDYLISVCNLYNIELILLIAPTSSKSRIQKIARAAPG 169 (263)
T ss_pred EE--EEecccHHHHhCHHHHHHHHHHcCCeEEEecCC--CHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHhCCC
Confidence 75 788 477 46889999999999999999 4688999999999999999999999999999999999887
Q ss_pred EEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccc---cCCCCH
Q 023494 190 LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV---FGAKDY 263 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaI---f~a~dp 263 (281)
+|++|+ .+|++||+ +.+...+.++++|+. .+.+|+|++||+ +++++.+.++|||++|+||++ +...++
T Consensus 170 FIY~vS-~~GvTG~~~~~~~~~~~~i~~ir~~-----t~~Pi~vGFGI~~~e~~~~~~~~GADGvVVGSalv~~i~~~~~ 243 (263)
T CHL00200 170 CIYLVS-TTGVTGLKTELDKKLKKLIETIKKM-----TNKPIILGFGISTSEQIKQIKGWNINGIVIGSACVQILLGSSP 243 (263)
T ss_pred cEEEEc-CCCCCCCCccccHHHHHHHHHHHHh-----cCCCEEEECCcCCHHHHHHHHhcCCCEEEECHHHHHHHHhcCh
Confidence 999999 78999985 334444555555553 357899999999 999999999999999999998 544444
Q ss_pred HHHHHHHHH
Q 023494 264 AEAIKGIKT 272 (281)
Q Consensus 264 ~~~~~~l~~ 272 (281)
.+..+++++
T Consensus 244 ~~~~~~~~~ 252 (263)
T CHL00200 244 EKGLDQLSE 252 (263)
T ss_pred hhHHHHHHH
Confidence 444444444
|
|
| >PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.8e-24 Score=185.37 Aligned_cols=201 Identities=21% Similarity=0.186 Sum_probs=157.0
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
-+.|+|+.++.+ .++.+.++.+.+.|++++|+|++|....+. ...++.+++.+ ..+++|+|+++ +++.+.+
T Consensus 9 ~~~it~~~~~~~-~~~~~~~~~~~~~gv~~v~lr~~~~~~~~~----~~~~~~~~~~~-~~~~~~l~~~~---~~~~a~~ 79 (212)
T PRK00043 9 LYLITDSRDDSG-RDLLEVVEAALEGGVTLVQLREKGLDTRER----LELARALKELC-RRYGVPLIVND---RVDLALA 79 (212)
T ss_pred EEEEECCccccc-ccHHHHHHHHHhcCCCEEEEeCCCCCHHHH----HHHHHHHHHHH-HHhCCeEEEeC---hHHHHHH
Confidence 467899988755 578889999999999999999998532221 12233333322 24678999986 8899999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchh-HHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES-QVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~-~l~kI~~ 215 (281)
+|+|++++|.+.. ....++.+++.|+++|++.+ |+.+..+.+...+|||.++.+.|+...+...+. .++++++
T Consensus 80 ~gad~vh~~~~~~----~~~~~~~~~~~~~~~g~~~~--t~~e~~~a~~~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~ 153 (212)
T PRK00043 80 VGADGVHLGQDDL----PVADARALLGPDAIIGLSTH--TLEEAAAALAAGADYVGVGPIFPTPTKKDAKAPQGLEGLRE 153 (212)
T ss_pred cCCCEEecCcccC----CHHHHHHHcCCCCEEEEeCC--CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHH
Confidence 9999999987642 23456667778999998875 555655555667999999989998766655543 4888998
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+++.++ +++|.++||||.+|+.++.++|||++++||+||+++||.+.++.+++.++.
T Consensus 154 ~~~~~~----~~~v~a~GGI~~~~i~~~~~~Ga~gv~~gs~i~~~~d~~~~~~~l~~~~~~ 210 (212)
T PRK00043 154 IRAAVG----DIPIVAIGGITPENAPEVLEAGADGVAVVSAITGAEDPEAAARALLAAFRA 210 (212)
T ss_pred HHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEeHHhhcCCCHHHHHHHHHHHHhh
Confidence 888763 278999999999999999999999999999999999999999999887654
|
|
| >cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=180.85 Aligned_cols=192 Identities=21% Similarity=0.188 Sum_probs=155.3
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|+|+.++ ..++.+.++.+.+.|++++|+|++|+++.+++. .++.+++.+. .+++|+|+++ +++.+.++
T Consensus 2 ~~it~~~~~--~~~~~~~l~~l~~~g~~~i~lr~~~~~~~~~~~----~~~~i~~~~~-~~~~~l~~~~---~~~~a~~~ 71 (196)
T cd00564 2 YLITDRRLD--GEDLLEVVEAALKGGVTLVQLREKDLSARELLE----LARALRELCR-KYGVPLIIND---RVDLALAV 71 (196)
T ss_pred EEEeCCccc--cchHHHHHHHHHhcCCCEEEEeCCCCCHHHHHH----HHHHHHHHHH-HhCCeEEEeC---hHHHHHHc
Confidence 468888776 457889999999999999999999998887653 4666766553 6789999987 67888999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l~kI~~ 215 (281)
|+|++++.... .....++.+++.+..+|+.++ |+ +.+.+... .+|+|.++++.|+..++.+ .+..++++++
T Consensus 72 g~~~vh~~~~~----~~~~~~~~~~~~~~~~g~~~~--t~-~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~ 144 (196)
T cd00564 72 GADGVHLGQDD----LPVAEARALLGPDLIIGVSTH--SL-EEALRAEELGADYVGFGPVFPTPTKPGAGPPLGLELLRE 144 (196)
T ss_pred CCCEEecCccc----CCHHHHHHHcCCCCEEEeeCC--CH-HHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHH
Confidence 99977555432 133456677778899999874 44 44455444 5999999999999888777 7788899988
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+++.. ++++.++|||+.+|+.++.++|+|.+++||+||+++||.+.+++++
T Consensus 145 ~~~~~-----~~pv~a~GGi~~~~i~~~~~~Ga~~i~~g~~i~~~~~~~~~~~~l~ 195 (196)
T cd00564 145 IAELV-----EIPVVAIGGITPENAAEVLAAGADGVAVISAITGADDPAAAARELL 195 (196)
T ss_pred HHHhC-----CCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHh
Confidence 88762 4789999999999999999999999999999999999999988876
|
TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions. |
| >PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.6e-24 Score=192.25 Aligned_cols=203 Identities=19% Similarity=0.261 Sum_probs=154.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEE--EecChhhHHHHHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL--MIVEPEQRVPDFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHL--mv~dp~~~i~~~~~aG 138 (281)
+-++|+|+.+++++++.+++.|.+++|+||||+.|+ +||++++++||+. +.+++|+|| |.++|.++++.+.++|
T Consensus 4 ~lilAlD~~~~~~~l~~~~~~~~~~~~ikvg~~~f~---~~G~~~i~~l~~~~~~i~~D~Kl~Di~~t~~~~i~~~~~~g 80 (230)
T PRK00230 4 RLIVALDFPSKEEALAFLDQLDPAVLFVKVGMELFT---AGGPQFVRELKQRGFKVFLDLKLHDIPNTVAKAVRALAKLG 80 (230)
T ss_pred CeEEEcCCCCHHHHHHHHHhcCCcccEEEEcHHHHH---hcCHHHHHHHHhcCCCEEEEeehhhccccHHHHHHHHHHcC
Confidence 357899999999999999999999999999999887 7999999999987 668999999 9999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHh-hcc--CCEEEEE---eecCCCCCCccchhHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECV-LDV--VDLVLIM---SVNPGFGGQSFIESQV 210 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~-l~~--vD~Ilvm---sV~pG~~GQ~f~~~~l 210 (281)
+|++|||+++. .+.++++.+..+++ +..+++.+-.+.+.+++.+. ... -++++.. ..+.|..|-...+.-
T Consensus 81 ad~itvH~~ag-~~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dgvv~~~~~- 158 (230)
T PRK00230 81 VDMVNVHASGG-PRMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDGVVCSAQE- 158 (230)
T ss_pred CCEEEEcccCC-HHHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeEEEeChHH-
Confidence 99999999984 67777788777754 56778765444444444321 110 1111111 122344332222222
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++.+|+.+.+ + .+.|.|||+++ +..+++++|||++|+||+||+++||.++++++++.+.
T Consensus 159 --~~~ir~~~~~---~-~~~v~pGI~~~g~~~~dq~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~~a~~i~~~i~ 228 (230)
T PRK00230 159 --AAAIREATGP---D-FLLVTPGIRPAGSDAGDQKRVMTPAQAIAAGSDYIVVGRPITQAADPAAAYEAILAEIA 228 (230)
T ss_pred --HHHHHhhcCC---c-eEEEcCCcCCCCCCcchHHHHhCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHHHhh
Confidence 4555555432 2 35789999987 8999999999999999999999999999999998765
|
|
| >PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.5e-23 Score=198.40 Aligned_cols=196 Identities=21% Similarity=0.331 Sum_probs=165.3
Q ss_pred EeccCccCHHHHHHHHHH---cCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCC---CCeeEEEEecChhhHHHHHHH
Q 023494 64 ILSANFAKLGEQVKAVEL---AGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTD---LPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~---~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~---~~idaHLmv~dp~~~i~~~~~ 136 (281)
++++|+.++++.++.+++ .|++++|+ | + |+. .++.+.+++|++..+ +..|+|+|.. |..+++.+.+
T Consensus 7 ~~alD~~~~~~~~~~~~~~~~~Gv~~ie~----g-~-p~~~~~~~~~i~~l~~~~~~~~ii~D~kl~d~-g~~~v~~a~~ 79 (430)
T PRK07028 7 QVALDLLELDRAVEIAKEAVAGGADWIEA----G-T-PLIKSEGMNAIRTLRKNFPDHTIVADMKTMDT-GAIEVEMAAK 79 (430)
T ss_pred EEEeccCCHHHHHHHHHHHHhcCCcEEEe----C-C-HHHHHhhHHHHHHHHHHCCCCEEEEEeeeccc-hHHHHHHHHH
Confidence 578999999999887776 89999997 3 3 554 889999999977522 4667888888 8889999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+|||++++|.+. +..++.++++.++++|+++++ .+++.|+.+.++++.+. +|||.+ .||+++|.+.+..++.++
T Consensus 80 aGAdgV~v~g~~-~~~~~~~~i~~a~~~G~~~~~g~~s~~t~~e~~~~a~~~GaD~I~~---~pg~~~~~~~~~~~~~l~ 155 (430)
T PRK07028 80 AGADIVCILGLA-DDSTIEDAVRAARKYGVRLMADLINVPDPVKRAVELEELGVDYINV---HVGIDQQMLGKDPLELLK 155 (430)
T ss_pred cCCCEEEEecCC-ChHHHHHHHHHHHHcCCEEEEEecCCCCHHHHHHHHHhcCCCEEEE---EeccchhhcCCChHHHHH
Confidence 999999999884 233567899999999999998 58888988888777764 999954 689988888777778887
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++.. +++|.++|||+.+|+.+++++|||.+++||+||+++||++.++++++.++
T Consensus 156 ~l~~~~-----~iPI~a~GGI~~~n~~~~l~aGAdgv~vGsaI~~~~d~~~~~~~l~~~i~ 211 (430)
T PRK07028 156 EVSEEV-----SIPIAVAGGLDAETAAKAVAAGADIVIVGGNIIKSADVTEAARKIREAID 211 (430)
T ss_pred HHHhhC-----CCcEEEECCCCHHHHHHHHHcCCCEEEEChHHcCCCCHHHHHHHHHHHHh
Confidence 777542 47899999999999999999999999999999999999999999988664
|
|
| >PLN02591 tryptophan synthase | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=149.70 Aligned_cols=205 Identities=18% Similarity=0.286 Sum_probs=157.9
Q ss_pred eEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----c------cCCHHHHHHcCcCCCCCee
Q 023494 59 IVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----I------TIGPLVVDALRPVTDLPLD 119 (281)
Q Consensus 59 ~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----~------~~G~~~I~~ir~~t~~~id 119 (281)
.+.|-+.+.|+. ...+.++.+.++|+|.|++. +.||..+.. + .-..+.++++|+.++.|+.
T Consensus 3 ~li~yi~aG~P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~i 82 (250)
T PLN02591 3 AFIPYITAGDPDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIV 82 (250)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEE
Confidence 378999999874 45567788889999999997 678844432 1 1236778888876677875
Q ss_pred EEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEE
Q 023494 120 VHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLV 191 (281)
Q Consensus 120 aHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~I 191 (281)
||+ .|| ++|++.+.++|+|.+.++.- +.++..++.+.++++|+.....+.|+|+.++++.+... -++|
T Consensus 83 --lm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDL--P~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia~~~~gFI 158 (250)
T PLN02591 83 --LFTYYNPILKRGIDKFMATIKEAGVHGLVVPDL--PLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIAEASEGFV 158 (250)
T ss_pred --EEecccHHHHhHHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHHhCCCcE
Confidence 788 477 35788899999999999976 46788899999999999999999999999999998776 4677
Q ss_pred EEEeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC----CCHH
Q 023494 192 LIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA----KDYA 264 (281)
Q Consensus 192 lvmsV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a----~dp~ 264 (281)
.+.++ .|.+|. .+.+...+.++++|+.. +.++.|..||+ +++++.+.+.|||.+|+||++.+. +++.
T Consensus 159 Y~Vs~-~GvTG~~~~~~~~~~~~i~~vk~~~-----~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGSalVk~i~~~~~~~ 232 (250)
T PLN02591 159 YLVSS-TGVTGARASVSGRVESLLQELKEVT-----DKPVAVGFGISKPEHAKQIAGWGADGVIVGSAMVKALGEAKSPE 232 (250)
T ss_pred EEeeC-CCCcCCCcCCchhHHHHHHHHHhcC-----CCceEEeCCCCCHHHHHHHHhcCCCEEEECHHHHHhhhhccChh
Confidence 76666 566664 34444455577777742 47899999999 999999999999999999999652 2455
Q ss_pred HHHHHHHHh
Q 023494 265 EAIKGIKTS 273 (281)
Q Consensus 265 ~~~~~l~~~ 273 (281)
+..+++.+.
T Consensus 233 ~~~~~~~~~ 241 (250)
T PLN02591 233 EGLKRLEKL 241 (250)
T ss_pred HHHHHHHHH
Confidence 444444443
|
|
| >TIGR01740 pyrF orotidine 5'-phosphate decarboxylase, subfamily 1 | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.5e-17 Score=143.52 Aligned_cols=184 Identities=20% Similarity=0.276 Sum_probs=126.9
Q ss_pred EeccCccCHHHHHHHHHHcC--CCeEEEEeeeCccccc-ccCCHHHHHHcCcCCCCCeeEEEEecChh----hHHHHHHH
Q 023494 64 ILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIK 136 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn-~~~G~~~I~~ir~~t~~~idaHLmv~dp~----~~i~~~~~ 136 (281)
++|+|+.+++++++.+++.+ ++++.+ ++ +. .++|++.+++||+.. .++.+|++..|.. .+++.+++
T Consensus 2 ivAlD~~~~~~a~~~~~~~~~~v~~iKi-----g~-~l~~~~G~~~v~~l~~~~-~~v~lD~K~~Dig~t~~~~~~~~~~ 74 (213)
T TIGR01740 2 IVALDVTTKDEALDLADSLGPEIEVIKV-----GI-DLLLDGGDKIIDELAKLN-KLIFLDLKFADIPNTVKLQYESKIK 74 (213)
T ss_pred EEECCCCCHHHHHHHHHhcCCcCcEEEE-----CH-HHHHhcCHHHHHHHHHcC-CCEEEEEeecchHHHHHHHHHHHHh
Confidence 68999999999999999887 666333 22 22 278999999999864 4677888887765 46777889
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE---CCCCCHH-------HHHHhhccCCEEEEEeecCCCCCCccc
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL---NPATSLS-------AIECVLDVVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai---~p~t~ie-------~~~~~l~~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+|||++|+|+++. .+.++++++.++++|.++-+.. |+. +.+ .+..+..... .-|..|--..
T Consensus 75 ~gad~vTvh~~~g-~~~l~~~~~~~~~~~~~v~~v~~lss~~-~~~~~~~~~~~v~~~a~~~~-------~~g~~g~v~~ 145 (213)
T TIGR01740 75 QGADMVNVHGVAG-SESVEAAKEAASEGGRGLLAVTELTSMG-SLDYGEDTMEKVLEYAKEAK-------AFGLDGPVCS 145 (213)
T ss_pred cCCCEEEEcCCCC-HHHHHHHHHHhhcCCCeEEEEEcCCCCC-hhhhCcCHHHHHHHHHHHhh-------hcCCeEEEeC
Confidence 9999999999974 5668899999888886554332 332 111 1111111110 1132232223
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChh---cH--------HHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK---NA--------YKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e---~i--------~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
|+.+ +++|+..+ + .+.+.+||+++ .. +.+.++|||++|+||+||+++||.+.+++++
T Consensus 146 ~~~~---~~ir~~~~----~-~~~vtPGI~~~g~~~~dq~~~~~~~~~~~~Gad~iVvGr~I~~~~d~~~~~~~~~ 213 (213)
T TIGR01740 146 AEEA---KEIRKFTG----D-FLILTPGIRLQSKGADDQQRVVTLEDAKEAGADVIIVGRGIYAAEDPVEAAKRIR 213 (213)
T ss_pred HHHH---HHHHHhcC----C-ceEEeCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHhC
Confidence 4444 44444432 2 35689999977 33 8899999999999999999999999988764
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. In many eukaryotes, the region hit by this model is part of a multifunctional protein. |
| >COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-16 Score=140.49 Aligned_cols=184 Identities=21% Similarity=0.201 Sum_probs=148.4
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
.++++.+.+.|++.+++...|... ..+ ....+++++.+ ....+-++++| +++.+.+.|||+||+.+++.
T Consensus 24 ~~~ve~al~~Gv~~vQlR~K~~~~---~~~-~~~a~~~~~lc-~~~~v~liINd---~~dlA~~~~AdGVHlGq~D~--- 92 (211)
T COG0352 24 LEWVEAALKGGVTAVQLREKDLSD---EEY-LALAEKLRALC-QKYGVPLIIND---RVDLALAVGADGVHLGQDDM--- 92 (211)
T ss_pred HHHHHHHHhCCCeEEEEecCCCCh---HHH-HHHHHHHHHHH-HHhCCeEEecC---cHHHHHhCCCCEEEcCCccc---
Confidence 578999999999999999888632 111 45556666654 34577889999 88888999999999999953
Q ss_pred cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
.....+++...++.+|++.+ +.+++.+.... +|||.+..+.|..+-+.-.+..++.++++++.. .+++.+
T Consensus 93 -~~~~ar~~~~~~~iIG~S~h---~~eea~~A~~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~-----~iP~vA 163 (211)
T COG0352 93 -PLAEARELLGPGLIIGLSTH---DLEEALEAEELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV-----NIPVVA 163 (211)
T ss_pred -chHHHHHhcCCCCEEEeecC---CHHHHHHHHhcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC-----CCCEEE
Confidence 33455666677889999987 67666665544 999999999998764444778888888887764 268999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
.||||++|+.+++++|||.+.+-|+||.++||.++++++++.++.
T Consensus 164 IGGi~~~nv~~v~~~Ga~gVAvvsai~~a~d~~~a~~~~~~~~~~ 208 (211)
T COG0352 164 IGGINLENVPEVLEAGADGVAVVSAITSAADPAAAAKALRNALED 208 (211)
T ss_pred EcCCCHHHHHHHHHhCCCeEEehhHhhcCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999987653
|
|
| >PRK13111 trpA tryptophan synthase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.7e-16 Score=141.99 Aligned_cols=194 Identities=21% Similarity=0.244 Sum_probs=150.6
Q ss_pred CCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcC-cCCC
Q 023494 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALR-PVTD 115 (281)
Q Consensus 56 ~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir-~~t~ 115 (281)
++..+.|-+.+.|+. ...+.++.+.+.|+|+|++. +.||..+.. +.-..+.++++| +.++
T Consensus 10 ~~~~li~yi~aG~P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~ 89 (258)
T PRK13111 10 GRKALIPYITAGDPDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPT 89 (258)
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 345699999999874 55566778889999999997 677744432 112367788888 4467
Q ss_pred CCeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-
Q 023494 116 LPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 116 ~~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~- 187 (281)
.|+. +|+ .|| ++|++.+.++|+|++.++.- +.++..++++.++++|+.....+.|+|+.++++.+...
T Consensus 90 ~p~v--lm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDL--p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~s 165 (258)
T PRK13111 90 IPIV--LMTYYNPIFQYGVERFAADAAEAGVDGLIIPDL--PPEEAEELRAAAKKHGLDLIFLVAPTTTDERLKKIASHA 165 (258)
T ss_pred CCEE--EEecccHHhhcCHHHHHHHHHHcCCcEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhC
Confidence 8876 677 466 35788999999999999865 46788999999999999999999999999999988775
Q ss_pred CCEEEEEeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCC
Q 023494 188 VDLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 188 vD~IlvmsV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.++|.+.++ .|.+|. .+.+...+.++++|+.. +.++.|.||| +++++.++.+. ||.+|+||+|.+.
T Consensus 166 ~gfIY~vs~-~GvTG~~~~~~~~~~~~i~~vk~~~-----~~pv~vGfGI~~~e~v~~~~~~-ADGviVGSaiv~~ 234 (258)
T PRK13111 166 SGFVYYVSR-AGVTGARSADAADLAELVARLKAHT-----DLPVAVGFGISTPEQAAAIAAV-ADGVIVGSALVKI 234 (258)
T ss_pred CCcEEEEeC-CCCCCcccCCCccHHHHHHHHHhcC-----CCcEEEEcccCCHHHHHHHHHh-CCEEEEcHHHHHH
Confidence 467776565 354443 34455566788888754 3689999999 58999998875 9999999998753
|
|
| >PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-16 Score=145.79 Aligned_cols=208 Identities=23% Similarity=0.283 Sum_probs=157.9
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcC-cCCCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALR-PVTDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir-~~t~~ 116 (281)
+..+.|-|.+.|+. ...+.++.+.++|+|.+++. +.||..+.. +.-..++++++| +.++.
T Consensus 9 ~~~li~yitaG~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~ 88 (259)
T PF00290_consen 9 RKALIPYITAGYPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDI 88 (259)
T ss_dssp BTEEEEEEETTSSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSS
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCC
Confidence 45789999999884 66678888999999999998 577744332 112246688888 66778
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-C
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-V 188 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-v 188 (281)
|+.+ |+ .|| ++|++.+.++|+|++.++.- +.++..++.+.++++|+.....+.|+|+.++++.+... -
T Consensus 89 pivl--m~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDL--P~ee~~~~~~~~~~~gl~~I~lv~p~t~~~Ri~~i~~~a~ 164 (259)
T PF00290_consen 89 PIVL--MTYYNPIFQYGIERFFKEAKEAGVDGLIIPDL--PPEESEELREAAKKHGLDLIPLVAPTTPEERIKKIAKQAS 164 (259)
T ss_dssp EEEE--EE-HHHHHHH-HHHHHHHHHHHTEEEEEETTS--BGGGHHHHHHHHHHTT-EEEEEEETTS-HHHHHHHHHH-S
T ss_pred CEEE--EeeccHHhccchHHHHHHHHHcCCCEEEEcCC--ChHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCC
Confidence 8776 77 365 35778888999999999987 46778889999999999999999999999999998876 4
Q ss_pred CEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC-----C
Q 023494 189 DLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG-----A 260 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~-----a 260 (281)
.+|.++++ .|.+|.. +.....+.|+++|+.. +.++.|..||+ +++++.+. .|||++|+||++.+ .
T Consensus 165 gFiY~vs~-~GvTG~~~~~~~~l~~~i~~ik~~~-----~~Pv~vGFGI~~~e~~~~~~-~~aDGvIVGSa~v~~i~~~~ 237 (259)
T PF00290_consen 165 GFIYLVSR-MGVTGSRTELPDELKEFIKRIKKHT-----DLPVAVGFGISTPEQAKKLA-AGADGVIVGSAFVKIIEENG 237 (259)
T ss_dssp SEEEEESS-SSSSSTTSSCHHHHHHHHHHHHHTT-----SS-EEEESSS-SHHHHHHHH-TTSSEEEESHHHHHHHHHTC
T ss_pred cEEEeecc-CCCCCCcccchHHHHHHHHHHHhhc-----CcceEEecCCCCHHHHHHHH-ccCCEEEECHHHHHHHHHcc
Confidence 66766666 4665533 4455667788887764 47999999999 78999977 99999999999874 3
Q ss_pred CCHHHHHHHHHHhcC
Q 023494 261 KDYAEAIKGIKTSKR 275 (281)
Q Consensus 261 ~dp~~~~~~l~~~~~ 275 (281)
++..+.++++++.++
T Consensus 238 ~~~~~~~~~~~~~~~ 252 (259)
T PF00290_consen 238 DDAEKFLKELKEFVR 252 (259)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 456667777766544
|
2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: |
| >PRK13305 sgbH 3-keto-L-gulonate-6-phosphate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.7e-17 Score=144.54 Aligned_cols=200 Identities=16% Similarity=0.193 Sum_probs=139.3
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcC-CCCCeeEEEEecChhhHH-HHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRV-PDFIK 136 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i-~~~~~ 136 (281)
+-++|+|+.+++++++.+.+.+ ++|+.+ | .|.+ .+|++.|++||+. +++++.+||++.|..+++ +.+.+
T Consensus 5 ~livALD~~~~~~A~~l~~~l~~~v~~iKV----G--~~L~~~~G~~~i~~lk~~~~~~~IflDlKl~DIp~tv~~~~~~ 78 (218)
T PRK13305 5 LLQLALDHTSLEAAQRDVTLLKDHVDIVEA----G--TILCLNEGLGAVKALREQCPDKIIVADWKVADAGETLAQQAFG 78 (218)
T ss_pred CEEEEeCCCCHHHHHHHHHHccccCCEEEE----C--HHHHHHhCHHHHHHHHHhCCCCEEEEEeecccChHHHHHHHHH
Confidence 4578899999999999887652 445444 5 3554 9999999999985 688999999999998764 45679
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcE---EEEECCCCCHHHHHHhhccCC-EEEEEeecCCCCCCccchhHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA---GVVLNPATSLSAIECVLDVVD-LVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~---Glai~p~t~ie~~~~~l~~vD-~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
+|+|.+++|..+ ..+.+.+..+.++++|.++ -+.+......+++.++ .++ +++..+....-.|.-+-+.-++.
T Consensus 79 ~Gad~~tv~~~~-g~~~i~~a~~~a~~~~~~~~~~llgV~t~~~~~~l~~~--g~~~~v~h~a~~a~~~G~v~s~~e~~~ 155 (218)
T PRK13305 79 AGANWMTIICAA-PLATVEKGHAVAQRCGGEIQIELFGNWTLDDARDWHRI--GVRQAIYHRGRDAQASGQQWGEADLAR 155 (218)
T ss_pred cCCCEEEEecCC-CHHHHHHHHHHHHhcCCcccceEEEecCcchHHHHHHc--CCHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 999999999875 3667777777666656442 1222111222333322 122 22222221111333334444444
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+ |+... .++++.|.|||++++....-+.++|++|+||+|++++||.++++++++.++.
T Consensus 156 i---r~~~~---~~~~i~VtpGIr~~~~~~~dq~rvd~iVVGR~It~A~dP~~aa~~i~~~i~~ 213 (218)
T PRK13305 156 M---KALSD---IGLELSITGGITPADLPLFKDIRVKAFIAGRALAGAANPAQVAADFHAQIDA 213 (218)
T ss_pred H---HHHhC---CCCcEEEeCCcCccccccccccCCCEEEECCcccCCCCHHHHHHHHHHHHHH
Confidence 4 44432 2577999999999999999999999999999999999999999999987753
|
|
| >COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=138.41 Aligned_cols=192 Identities=20% Similarity=0.260 Sum_probs=150.9
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcC-CCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPV-TDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~-t~~ 116 (281)
+..+.|.+.++|+. ...+.++.|.++|+|.|++. +.||..+.. +.--.++++.+|+. ++.
T Consensus 16 ~~a~i~yit~GdP~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~ 95 (265)
T COG0159 16 RGALIPYVTAGDPDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKV 95 (265)
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCC
Confidence 35699999999974 56677788889999999997 678844432 12235667778853 667
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC-
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV- 188 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v- 188 (281)
|+.+ |+ .|| ++|++.+.++|+|++.+..- +.++..++.+.++++|+.......|+|+.++++.+....
T Consensus 96 Pivl--m~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDL--P~ee~~~~~~~~~~~gi~~I~lvaPtt~~~rl~~i~~~a~ 171 (265)
T COG0159 96 PIVL--MTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDL--PPEESDELLKAAEKHGIDPIFLVAPTTPDERLKKIAEAAS 171 (265)
T ss_pred CEEE--EEeccHHHHhhHHHHHHHHHHcCCCEEEeCCC--ChHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 8775 66 688 35788899999999999976 567788899999999999999999999999999998875
Q ss_pred CEEEEEeecCCCCCCccc--hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 189 DLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~f~--~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+|.+.++. |.+|..-. ....+.++++|+.. +.++.|..||+ +++++++.++ ||.+|+||+|.+
T Consensus 172 GFiY~vs~~-GvTG~~~~~~~~~~~~v~~vr~~~-----~~Pv~vGFGIs~~e~~~~v~~~-ADGVIVGSAiV~ 238 (265)
T COG0159 172 GFIYYVSRM-GVTGARNPVSADVKELVKRVRKYT-----DVPVLVGFGISSPEQAAQVAEA-ADGVIVGSAIVK 238 (265)
T ss_pred CcEEEEecc-cccCCCcccchhHHHHHHHHHHhc-----CCCeEEecCcCCHHHHHHHHHh-CCeEEEcHHHHH
Confidence 566666664 55554322 23567788888775 36899999999 9999999999 999999999985
|
|
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-14 Score=124.08 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=139.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+..+..+++|+++||+---|+.|- -.++.++.+|+..+.|+.+.-.+.++ ..++.+.++|||+|++...+.
T Consensus 31 ~~~~~~A~~~~~~GA~~l~v~~~~~~~~----g~~~~~~~i~~~v~iPi~~~~~i~~~-~~v~~~~~~Gad~v~l~~~~~ 105 (217)
T cd00331 31 FDPVEIAKAYEKAGAAAISVLTEPKYFQ----GSLEDLRAVREAVSLPVLRKDFIIDP-YQIYEARAAGADAVLLIVAAL 105 (217)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCccccC----CCHHHHHHHHHhcCCCEEECCeecCH-HHHHHHHHcCCCEEEEeeccC
Confidence 3577777888899999999855555432 25678888888778898876556666 378899999999999887654
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
+.+++.++++.++..|+.+-+.++ ..++++...+ .+|++.+- +..++.+.+. ++.++++++.++ .+.+
T Consensus 106 ~~~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~~g~~~i~~t----~~~~~~~~~~-~~~~~~l~~~~~---~~~p 174 (217)
T cd00331 106 DDEQLKELYELARELGMEVLVEVH---DEEELERALALGAKIIGIN----NRDLKTFEVD-LNTTERLAPLIP---KDVI 174 (217)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHcCCCEEEEe----CCCccccCcC-HHHHHHHHHhCC---CCCE
Confidence 335678888888999999877775 4444555544 48988753 3445545433 366677766542 1367
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
+.+-|||+ ++++.++.++|||.+++||+|++..||.+.+++|
T Consensus 175 via~gGI~s~edi~~~~~~Ga~gvivGsai~~~~~p~~~~~~~ 217 (217)
T cd00331 175 LVSESGISTPEDVKRLAEAGADAVLIGESLMRAPDPGAALREL 217 (217)
T ss_pred EEEEcCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHhC
Confidence 88899997 6999999999999999999999999999888753
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.2e-14 Score=118.58 Aligned_cols=180 Identities=26% Similarity=0.249 Sum_probs=134.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHH----HHHHcCCCEEEEcc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP----DFIKAGADIVSVHC 146 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~----~~~~aGAd~Itvh~ 146 (281)
+..+.++.+.+.|++.+|+..++.++......+++.++.+++..+.|+.+|++++++..++. .+.++|+|+|.+|.
T Consensus 13 ~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~l~~ 92 (200)
T cd04722 13 DPVELAKAAAEAGADAIIVGTRSSDPEEAETDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVEIHG 92 (200)
T ss_pred HHHHHHHHHHcCCCCEEEEeeEEECcccCCCccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEEEec
Confidence 55778888999999999999999876666555545577766667899999999999987664 77899999999998
Q ss_pred cccc-cccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhc
Q 023494 147 EQSS-TIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEK 223 (281)
Q Consensus 147 Ea~~-~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~ 223 (281)
+... .....+.++.+++. ++.+++.+++.+..+........+|+|.+....++..++...+.....+++++.
T Consensus 93 ~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 167 (200)
T cd04722 93 AVGYLAREDLELIRELREAVPDVKVVVKLSPTGELAAAAAEEAGVDEVGLGNGGGGGGGRDAVPIADLLLILAKR----- 167 (200)
T ss_pred cCCcHHHHHHHHHHHHHHhcCCceEEEEECCCCccchhhHHHcCCCEEEEcCCcCCCCCccCchhHHHHHHHHHh-----
Confidence 8520 01256788888887 899999998877665432122258999887776665554443333333443332
Q ss_pred CCCCeEEEecCCCh-hcHHHHHHcCCcEEEEcc
Q 023494 224 GVNPWIEVDGGVGP-KNAYKVIEAGANALVAGS 255 (281)
Q Consensus 224 ~~~~~I~VDGGI~~-e~i~~~~~aGAD~~VvGS 255 (281)
..+++|.++|||+. +++.+++++|||.+++||
T Consensus 168 ~~~~pi~~~GGi~~~~~~~~~~~~Gad~v~vgs 200 (200)
T cd04722 168 GSKVPVIAGGGINDPEDAAEALALGADGVIVGS 200 (200)
T ss_pred cCCCCEEEECCCCCHHHHHHHHHhCCCEEEecC
Confidence 23578999999997 999999999999999997
|
Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN. |
| >PRK12290 thiE thiamine-phosphate pyrophosphorylase; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-14 Score=138.88 Aligned_cols=188 Identities=15% Similarity=0.085 Sum_probs=142.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
++++.+.++|+++++++..|.. .-. -...++++++.+ ....+.|.++| +++.+.+.|||+||+..+.. .
T Consensus 221 ~~ve~aL~aGv~~VQLReK~ls---~~e-l~~la~~l~~l~-~~~gv~LiIND---~~dlAl~~gAdGVHLGQeDL--~- 289 (437)
T PRK12290 221 EWIERLLPLGINTVQLRIKDPQ---QAD-LEQQIIRAIALG-REYNAQVFIND---YWQLAIKHQAYGVHLGQEDL--E- 289 (437)
T ss_pred HHHHHHHhCCCCEEEEeCCCCC---HHH-HHHHHHHHHHHH-HHhCCEEEEEC---HHHHHHHcCCCEEEcChHHc--c-
Confidence 5699999999999999988852 111 123344444433 23467889999 89999999999999999863 1
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCC-ccchhHHHHHHHHHHHhhh----cCCCCe
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLE----KGVNPW 228 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ-~f~~~~l~kI~~lr~l~~~----~~~~~~ 228 (281)
....+.+...|..+|++.+ +.-|..+..-..+|||.+..+.|..+-+ ...|..++++++++++++. ...+++
T Consensus 290 -~~~aR~ilg~~~iIGvStH--s~eEl~~A~~~gaDYI~lGPIFpT~TK~~~~~p~Gl~~L~~~~~l~~~~~~~~~~~iP 366 (437)
T PRK12290 290 -EANLAQLTDAGIRLGLSTH--GYYELLRIVQIQPSYIALGHIFPTTTKQMPSKPQGLVRLALYQKLIDTIPYQGQTGFP 366 (437)
T ss_pred -hhhhhhhcCCCCEEEEecC--CHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHHhhhccccccCCCC
Confidence 2334455556788898875 3333333333469999999999987654 5678889999988887642 123579
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+...|||+++|+.++.++||+.+.+-|+|++++||+++++++++.+.
T Consensus 367 VVAIGGI~~~Ni~~vl~aGa~GVAVVSAI~~A~DP~aa~~~l~~~~~ 413 (437)
T PRK12290 367 TVAIGGIDQSNAEQVWQCGVSSLAVVRAITLAEDPQLVIEFFDQVMA 413 (437)
T ss_pred EEEECCcCHHHHHHHHHcCCCEEEEehHhhcCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999998654
|
|
| >PRK06512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=122.80 Aligned_cols=197 Identities=15% Similarity=0.073 Sum_probs=137.9
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcC-CCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAG-CDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G-~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
+.|+|... +...+.+.++.+.+.| ++++++.-.+-. .- .-....+++++.+ ....+.|.++| +++.+.+
T Consensus 16 y~It~~~~--~~~~~~~~l~~al~~G~v~~vQlR~K~l~---~~-~~~~~a~~l~~l~-~~~gv~liINd---~~dlA~~ 85 (221)
T PRK06512 16 VLVAPPIA--DGAELAKLLRAALQGGDVASVILPQYGLD---EA-TFQKQAEKLVPVI-QEAGAAALIAG---DSRIAGR 85 (221)
T ss_pred EEEeCCCc--ccccHHHHHHHHHcCCCccEEEEeCCCCC---HH-HHHHHHHHHHHHH-HHhCCEEEEeC---HHHHHHH
Confidence 44666643 3346778899999999 799999866642 11 1123445555443 23357788998 7888899
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh-hccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.|||+||+..+.. .+.+..+. ...+..+|++. .++.+...+- -..+|||.+..+.+.. -....|..++.+++
T Consensus 86 ~~adGVHLg~~d~---~~~~~r~~-~~~~~iiG~s~--~~s~~~a~~A~~~gaDYv~~Gpv~t~t-K~~~~p~gl~~l~~ 158 (221)
T PRK06512 86 VKADGLHIEGNLA---ALAEAIEK-HAPKMIVGFGN--LRDRHGAMEIGELRPDYLFFGKLGADN-KPEAHPRNLSLAEW 158 (221)
T ss_pred hCCCEEEECcccc---CHHHHHHh-cCCCCEEEecC--CCCHHHHHHhhhcCCCEEEECCCCCCC-CCCCCCCChHHHHH
Confidence 9999999998742 23222222 22344566652 2344444443 2468999998886532 22345667788877
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
+++.. ++++.+-||||++|+.++.++||+.+.+-|+|++++||+++++++++.+++
T Consensus 159 ~~~~~-----~iPvvAIGGI~~~n~~~~~~~GA~giAvisai~~~~dp~~a~~~~~~~~~~ 214 (221)
T PRK06512 159 WAEMI-----EIPCIVQAGSDLASAVEVAETGAEFVALERAVFDAHDPPLAVAQANALLDE 214 (221)
T ss_pred HHHhC-----CCCEEEEeCCCHHHHHHHHHhCCCEEEEhHHhhCCCCHHHHHHHHHHHHhh
Confidence 76653 479999999999999999999999999999999999999999999987764
|
|
| >TIGR00693 thiE thiamine-phosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-13 Score=118.68 Aligned_cols=191 Identities=18% Similarity=0.174 Sum_probs=126.4
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
.|+|...+ ...+.+.++.+.+.|++++|+...|.. -..-...+++++..+ ....+.+++++ +++.+.+.|
T Consensus 4 ~it~~~~~--~~~~~~~~~~~~~~g~~~v~lR~~~~~----~~~~~~~~~~l~~~~-~~~~~~l~i~~---~~~la~~~g 73 (196)
T TIGR00693 4 LITDPQDG--PADLLNRVEAALKGGVTLVQLRDKGSN----TRERLALAEKLQELC-RRYGVPFIVND---RVDLALALG 73 (196)
T ss_pred EEECCccc--cccHHHHHHHHHhcCCCEEEEecCCCC----HHHHHHHHHHHHHHH-HHhCCeEEEEC---HHHHHHHcC
Confidence 45555332 235677888888999999999866531 111123444444432 12356678877 778889999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCC-CccchhHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGG-QSFIESQVKKISDL 216 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~G-Q~f~~~~l~kI~~l 216 (281)
+|+|++..... .. ..++.....+..+|+..+ ..+.+.... ..+|||.+-.+.|.... +...+..++.++++
T Consensus 74 ~~GvHl~~~~~---~~-~~~r~~~~~~~~ig~s~h---~~~e~~~a~~~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~ 146 (196)
T TIGR00693 74 ADGVHLGQDDL---PA-SEARALLGPDKIIGVSTH---NLEELAEAEAEGADYIGFGPIFPTPTKKDPAPPAGVELLREI 146 (196)
T ss_pred CCEEecCcccC---CH-HHHHHhcCCCCEEEEeCC---CHHHHHHHhHcCCCEEEECCccCCCCCCCCCCCCCHHHHHHH
Confidence 99999975532 12 233433445677777765 333344433 36999988766653221 11122346666666
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
++... +.++.+-|||++++++++.++|+|.+++||+|++++||.+.+++|
T Consensus 147 ~~~~~----~~pv~a~GGI~~~~~~~~~~~G~~gva~~~~i~~~~dp~~~~~~l 196 (196)
T TIGR00693 147 AATSI----DIPIVAIGGITLENAAEVLAAGADGVAVVSAIMQAADPKAAAKQL 196 (196)
T ss_pred HHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHhC
Confidence 65532 368999999999999999999999999999999999999888753
|
This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI. |
| >PRK07695 transcriptional regulator TenI; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.2e-13 Score=116.69 Aligned_cols=194 Identities=18% Similarity=0.153 Sum_probs=132.9
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|+++-++. ..+.+..+ +.+.|++++|++..+... ..-...++.+++.. .+ ...|+++| +.+.+.+.
T Consensus 5 ~~it~~~~~~--~~~~~~~~-~~~~g~~~iqlR~k~~~~----~~~~~~~~~l~~~~-~~-~~~liin~---~~~la~~~ 72 (201)
T PRK07695 5 HVISNGHQSF--EELVAVAM-QIHSEVDYIHIREREKSA----KELYEGVESLLKKG-VP-ASKLIIND---RVDIALLL 72 (201)
T ss_pred EEEECCcccc--chHHHHHH-HHhCCCCEEEEcCCCCCH----HHHHHHHHHHHHhC-CC-CCeEEEEC---HHHHHHHc
Confidence 5577775543 24555555 667899999998665421 11123455555432 22 34689998 56778899
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|+|++++..... .+....+.. .+..+|+..+ +.+.+....+ .+|||.+..+.|....+...+..++.++++
T Consensus 73 ~~~gvHl~~~~~---~~~~~r~~~--~~~~ig~s~~---s~e~a~~a~~~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~ 144 (201)
T PRK07695 73 NIHRVQLGYRSF---SVRSVREKF--PYLHVGYSVH---SLEEAIQAEKNGADYVVYGHVFPTDCKKGVPARGLEELSDI 144 (201)
T ss_pred CCCEEEeCcccC---CHHHHHHhC--CCCEEEEeCC---CHHHHHHHHHcCCCEEEECCCCCCCCCCCCCCCCHHHHHHH
Confidence 999999987632 232222221 2677888654 4555555433 589998766666544333334456667766
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
++.. ++++.+-|||+++++.++.+.|+|.+.+||+|++++||.++++++++.++.
T Consensus 145 ~~~~-----~ipvia~GGI~~~~~~~~~~~Ga~gvav~s~i~~~~~p~~~~~~~~~~~~~ 199 (201)
T PRK07695 145 ARAL-----SIPVIAIGGITPENTRDVLAAGVSGIAVMSGIFSSANPYSKAKRYAESIKK 199 (201)
T ss_pred HHhC-----CCCEEEEcCCCHHHHHHHHHcCCCEEEEEHHHhcCCCHHHHHHHHHHHHhh
Confidence 6543 478999999999999999999999999999999999999999999987653
|
|
| >PRK02615 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-13 Score=128.70 Aligned_cols=203 Identities=15% Similarity=0.117 Sum_probs=140.4
Q ss_pred cccCCCCC-ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh
Q 023494 50 VDKFSKSD-IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE 128 (281)
Q Consensus 50 ~~~~~~~~-~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~ 128 (281)
-..+.+.. +.|+++ ..++.+.++.+.++|++++|+...+.. .- .-....+.+++.+ ....+.++++|
T Consensus 141 ~~~l~~~~LylIT~~-----~~~ll~~l~~al~~Gv~~VQLR~K~~~---~~-~~~~~a~~L~~l~-~~~~~~lIIND-- 208 (347)
T PRK02615 141 RQRLKDARLYLITSP-----SENLLEVVEAALKGGVTLVQYRDKTAD---DR-QRLEEAKKLKELC-HRYGALFIVND-- 208 (347)
T ss_pred HHhhccCCEEEEECC-----chhHHHHHHHHHHcCCCEEEECCCCCC---HH-HHHHHHHHHHHHH-HHhCCeEEEeC--
Confidence 33444433 345555 235777888999999999999866641 11 1123344444433 23457789998
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH-hhccCCEEEEEeecCCCCCCccch
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~-~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+++.+.+.|+|+||+..... . + ...+.....+..+|++.+ + .+.+.. .-..+|||.+..+.|..+...-.+
T Consensus 209 -~vdlAl~~~aDGVHLgq~dl--~-~-~~aR~llg~~~iIG~S~H--s-~~e~~~A~~~GaDYI~lGPvf~T~tKp~~~~ 280 (347)
T PRK02615 209 -RVDIALAVDADGVHLGQEDL--P-L-AVARQLLGPEKIIGRSTT--N-PEEMAKAIAEGADYIGVGPVFPTPTKPGKAP 280 (347)
T ss_pred -hHHHHHHcCCCEEEeChhhc--C-H-HHHHHhcCCCCEEEEecC--C-HHHHHHHHHcCCCEEEECCCcCCCCCCCCCC
Confidence 78888999999999987642 1 2 222222224456777774 3 444444 344799999988887644322235
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~ 277 (281)
-.++.++++++.. ++++.+-|||+++|+.++.++|++.++++|+|++++||.++++++.+.+.+.
T Consensus 281 ~Gle~l~~~~~~~-----~iPv~AiGGI~~~ni~~l~~~Ga~gVAvisaI~~a~dp~~~~~~l~~~l~~~ 345 (347)
T PRK02615 281 AGLEYLKYAAKEA-----PIPWFAIGGIDKSNIPEVLQAGAKRVAVVRAIMGAEDPKQATQELLKQLSRE 345 (347)
T ss_pred CCHHHHHHHHHhC-----CCCEEEECCCCHHHHHHHHHcCCcEEEEeHHHhCCCCHHHHHHHHHHHHhcc
Confidence 5577777776643 3688899999999999999999999999999999999999999999877643
|
|
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.6e-12 Score=115.92 Aligned_cols=187 Identities=22% Similarity=0.265 Sum_probs=137.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.++++|++-|-+ .-|..| +.=+.+.++.+|+.+++|+...=.+.+|. .+..+.++|||+|++.+...+
T Consensus 71 ~~~~~A~~~~~~GA~aisv-lte~~~---f~g~~~~l~~v~~~v~iPvl~kdfi~~~~-qi~~a~~~GAD~VlLi~~~l~ 145 (260)
T PRK00278 71 DPVEIAKAYEAGGAACLSV-LTDERF---FQGSLEYLRAARAAVSLPVLRKDFIIDPY-QIYEARAAGADAILLIVAALD 145 (260)
T ss_pred CHHHHHHHHHhCCCeEEEE-eccccc---CCCCHHHHHHHHHhcCCCEEeeeecCCHH-HHHHHHHcCCCEEEEEeccCC
Confidence 5677778888999998744 223322 23357889999888889999877778877 588899999999999988643
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+++.++++.+++.|+.+-+.++. .++++...+ .+|+|.+ + +.+-+.|.+. ++...++.+.+++ ....|
T Consensus 146 ~~~l~~li~~a~~lGl~~lvevh~---~~E~~~A~~~gadiIgi---n-~rdl~~~~~d-~~~~~~l~~~~p~--~~~vI 215 (260)
T PRK00278 146 DEQLKELLDYAHSLGLDVLVEVHD---EEELERALKLGAPLIGI---N-NRNLKTFEVD-LETTERLAPLIPS--DRLVV 215 (260)
T ss_pred HHHHHHHHHHHHHcCCeEEEEeCC---HHHHHHHHHcCCCEEEE---C-CCCcccccCC-HHHHHHHHHhCCC--CCEEE
Confidence 458999999999999999998863 333333333 5888864 3 2223344333 5666666665532 11345
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
+..|+.+++++..+.++|+|.+++||+|.+++||.+.+++|+.
T Consensus 216 aegGI~t~ed~~~~~~~Gad~vlVGsaI~~~~dp~~~~~~l~~ 258 (260)
T PRK00278 216 SESGIFTPEDLKRLAKAGADAVLVGESLMRADDPGAALRELLG 258 (260)
T ss_pred EEeCCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 5445557999999999999999999999999999999988754
|
|
| >KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.4e-11 Score=107.46 Aligned_cols=198 Identities=20% Similarity=0.242 Sum_probs=139.0
Q ss_pred CCCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc---------ccC--CHHHHHHcCcCCC
Q 023494 55 KSDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN---------ITI--GPLVVDALRPVTD 115 (281)
Q Consensus 55 ~~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn---------~~~--G~~~I~~ir~~t~ 115 (281)
+++.-+.|.+-|.|+. +..+.++-+..+|.|.|++. +.||..+.. ++| -.++++..|.. +
T Consensus 15 enknaLvtfiTaG~P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~-g 93 (268)
T KOG4175|consen 15 ENKNALVTFITAGDPDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQ-G 93 (268)
T ss_pred cCCceEEEEEecCCCcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhccc-C
Confidence 3456788999999873 55566777788999999996 567732221 122 12334443432 2
Q ss_pred CCeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC
Q 023494 116 LPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188 (281)
Q Consensus 116 ~~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v 188 (281)
..+-+-||. .|| ++|+..+.++||++..+..- +.++...+.+++|++|+.......|.|+.|+.+-+....
T Consensus 94 vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDl--PpEEa~~~Rne~~k~gislvpLvaPsTtdeRmell~~~a 171 (268)
T KOG4175|consen 94 VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDL--PPEEAETLRNEARKHGISLVPLVAPSTTDERMELLVEAA 171 (268)
T ss_pred cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccC--ChHHHHHHHHHHHhcCceEEEeeCCCChHHHHHHHHHhh
Confidence 333344677 688 36888899999999988866 456778889999999999999999999999998877766
Q ss_pred CE-EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 189 DL-VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 189 D~-IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|- |.+.+ .-|..|.. ...-+++.++.+.+++.-.+.+++|..||+ +|+.+++-.. ||.+|+||.|.+
T Consensus 172 dsFiYvVS-rmG~TG~~--~svn~~l~~L~qrvrk~t~dtPlAVGFGvst~EHf~qVgsv-aDGVvvGSkiv~ 240 (268)
T KOG4175|consen 172 DSFIYVVS-RMGVTGTR--ESVNEKLQSLLQRVRKATGDTPLAVGFGVSTPEHFKQVGSV-ADGVVVGSKIVK 240 (268)
T ss_pred cceEEEEE-eccccccH--HHHHHHHHHHHHHHHHhcCCCceeEeeccCCHHHHHhhhhh-ccceEecHHHHH
Confidence 64 44433 34766632 233444444444444333356899999999 8899998777 999999999863
|
|
| >PRK03512 thiamine-phosphate pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.6e-12 Score=113.26 Aligned_cols=183 Identities=19% Similarity=0.143 Sum_probs=127.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
+.++.+.++|+++||+...+-. .-.+ ....+++++.+ ....+.++++| +++.+.+.|+|+||+..+.. .
T Consensus 23 ~~l~~~l~~G~~~vqLR~k~~~---~~~~-~~la~~l~~~~-~~~~~~liInd---~~~lA~~~~adGVHlg~~d~---~ 91 (211)
T PRK03512 23 QWIERLLDAGVRTLQLRIKDRR---DEEV-EADVVAAIALG-RRYQARLFIND---YWRLAIKHQAYGVHLGQEDL---E 91 (211)
T ss_pred HHHHHHHhCCCCEEEEcCCCCC---HHHH-HHHHHHHHHHH-HHhCCeEEEeC---HHHHHHHcCCCEEEcChHhC---C
Confidence 4688899999999999866542 1111 12233333322 22467788888 78888899999999987642 1
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+ ...+.+...+..+|++.+ ..+.+.... ..+||+.+..+.|..+-+. -.+..++.++++++.. .++++.+
T Consensus 92 ~-~~~r~~~~~~~~iG~S~H---~~~e~~~A~~~gaDYi~lgpvf~T~tK~~~~~~~G~~~l~~~~~~~----~~~PV~A 163 (211)
T PRK03512 92 T-ADLNAIRAAGLRLGVSTH---DDMEIDVALAARPSYIALGHVFPTQTKQMPSAPQGLAQLARHVERL----ADYPTVA 163 (211)
T ss_pred H-HHHHHhcCCCCEEEEeCC---CHHHHHHHhhcCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhc----CCCCEEE
Confidence 1 223333334566777774 344444433 3699999998988754332 2234556666655432 2478999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
-|||+++|+.++.++|++.+.+-|+|++++||.++++++++.+.
T Consensus 164 iGGI~~~ni~~l~~~Ga~GiAvisai~~~~d~~~~~~~l~~~~~ 207 (211)
T PRK03512 164 IGGISLERAPAVLATGVGSIAVVSAITQAADWRAATAQLLELAE 207 (211)
T ss_pred ECCCCHHHHHHHHHcCCCEEEEhhHhhCCCCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999988654
|
|
| >PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2 | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.4e-12 Score=108.57 Aligned_cols=176 Identities=20% Similarity=0.145 Sum_probs=117.4
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|+|.-++ ..++.+.++.+.+.|++++|++..+..-- .-.+.++.+++.+ ....+.++++| +++.+.+.|+
T Consensus 4 It~~~~~--~~~~~~~l~~~~~~gv~~v~lR~k~~~~~----~~~~~a~~l~~~~-~~~~~~liin~---~~~la~~~~~ 73 (180)
T PF02581_consen 4 ITDPRLC--GDDFLEQLEAALAAGVDLVQLREKDLSDE----ELLELARRLAELC-QKYGVPLIIND---RVDLALELGA 73 (180)
T ss_dssp EE-STTS--TCHHHHHHHHHHHTT-SEEEEE-SSS-HH----HHHHHHHHHHHHH-HHTTGCEEEES----HHHHHHCT-
T ss_pred EeCCchh--cchHHHHHHHHHHCCCcEEEEcCCCCCcc----HHHHHHHHHHHHh-hcceEEEEecC---CHHHHHhcCC
Confidence 4555444 45678889999999999999997764211 1122344443332 12356678888 7788899999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
|+||+..... ...+ .+.....+..+|.+.+ ..+.+.+.. ..+|||.+-.++|..+-....+..++.++++++
T Consensus 74 dGvHl~~~~~---~~~~-~r~~~~~~~~ig~S~h---~~~e~~~a~~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~ 146 (180)
T PF02581_consen 74 DGVHLGQSDL---PPAE-ARKLLGPDKIIGASCH---SLEEAREAEELGADYVFLGPVFPTSSKPGAPPLGLDGLREIAR 146 (180)
T ss_dssp SEEEEBTTSS---SHHH-HHHHHTTTSEEEEEES---SHHHHHHHHHCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHH
T ss_pred CEEEeccccc---chHH-hhhhcccceEEEeecC---cHHHHHHhhhcCCCEEEECCccCCCCCccccccCHHHHHHHHH
Confidence 9999998742 2322 3333445788998886 444455544 469999999998877654446777888888887
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
..+ .++.+-|||+++|+.++.++|++.+.+.|+|
T Consensus 147 ~~~-----~pv~AlGGI~~~~i~~l~~~Ga~gvAvi~aI 180 (180)
T PF02581_consen 147 ASP-----IPVYALGGITPENIPELREAGADGVAVISAI 180 (180)
T ss_dssp HTS-----SCEEEESS--TTTHHHHHHTT-SEEEESHHH
T ss_pred hCC-----CCEEEEcCCCHHHHHHHHHcCCCEEEEEeeC
Confidence 753 6899999999999999999999999999886
|
5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D .... |
| >cd04725 OMP_decarboxylase_like Orotidine 5'-phosphate decarboxylase (ODCase) is a dimeric enzyme that decarboxylates orotidine 5'-monophosphate (OMP) to form uridine 5'-phosphate (UMP), an essential step in the pyrimidine biosynthetic pathway | Back alignment and domain information |
|---|
Probab=99.38 E-value=2.2e-12 Score=114.86 Aligned_cols=193 Identities=19% Similarity=0.237 Sum_probs=127.3
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhH----HHHHHHcC
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFIKAG 138 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~----i~~~~~aG 138 (281)
++++|+.++++.++.+++.+ ++ +++..-++ |.+ .+|++.++.||+.. +++.+|+|..|.... ++.+.+.|
T Consensus 2 ivALD~~~~~~a~~i~~~~~-~~--v~~iKvg~-~l~~~~g~~~i~~l~~~~-~~i~~DlK~~DIg~tv~~~~~~~~~~g 76 (216)
T cd04725 2 IVALDPPDEEFALALIDALG-PY--VCAVKVGL-ELFEAAGPEIVKELRELG-FLVFLDLKLGDIPNTVAAAAEALLGLG 76 (216)
T ss_pred EEEeCCCCHHHHHHHHHhcC-Cc--ccEEEECH-HHHHhcCHHHHHHHHHCC-CcEEEEeecCchHHHHHHHHHHHHhcC
Confidence 57899999999998888763 32 45555333 443 79999999999864 899999999998764 44577899
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC-CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~-p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
+|++|+|.-.. .+.++.+++..++++.++-+... .+..-+.+++.... +..+.-+.-.-|..|--..+.-.+.
T Consensus 77 ad~~Tvh~~~G-~~~l~~~~~~~~~~~~~~~~v~~lss~~~~~~q~~~~~~~~~~~~~~~~~a~~~g~~G~V~~~~~~~~ 155 (216)
T cd04725 77 ADAVTVHPYGG-SDMLKAALEAAEEKGKGLFAVTVLSSPGALDLQEGIPGSLEDLVERLAKLAREAGVDGVVCGATEPEA 155 (216)
T ss_pred CCEEEECCcCC-HHHHHHHHHHHhccCCeEEEEEcCCCCCHHHHHhhhcCCHHHHHHHHHHHHHHHCCCEEEECCcchHH
Confidence 99999999873 67788888888877765544322 22233333221110 0000001111121121111112233
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChh----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPK----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
+ ++.. +.++. .+-+||+++ +..+++++|++++++|++|+.++||.+.+++
T Consensus 156 i---~~~~---~~~~~-~ltPGI~~~~~~~dq~r~~~~~~a~~~g~~~ivvGR~I~~a~~p~~~~~~ 215 (216)
T cd04725 156 L---RRAL---GPDFL-ILTPGIGAQGSGDDQKRGGTPEDAIRAGADYIVVGRPITQAADPVAAAEA 215 (216)
T ss_pred H---HHhh---CCCCe-EEcCCcCCCCCccccccccCHHHHHHcCCcEEEEChhhccCCCHHHHHhc
Confidence 3 2222 22455 589999999 9999999999999999999999999988765
|
In mammals, UMP synthase contains two domains: the orotate phosphoribosyltransferase (OPRTase) domain that catalyzes the transfer of phosphoribosyl 5'-pyrophosphate (PRPP) to orotate to form OMP, and the orotidine-5'-phosphate decarboxylase (ODCase) domain that decarboxylates OMP to form UMP. |
| >PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.6e-13 Score=121.27 Aligned_cols=195 Identities=22% Similarity=0.276 Sum_probs=127.6
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCC----HHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIG----PLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G----~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
.-.+++|+.++++.++.+++.+ ++++.+ | .|.+ .+| ++.++.+|+.. +++.+|+|+.|...++..+
T Consensus 2 ~L~vALD~~~~~~a~~i~~~~~~~v~~iKv----G--~~l~~~~G~~~l~~~i~~l~~~~-~~I~~D~K~~Dig~t~~~~ 74 (226)
T PF00215_consen 2 KLQVALDPTDLEEALRIADELGDYVDIIKV----G--TPLFLAYGLEALPEIIEELKERG-KPIFLDLKLGDIGNTVARY 74 (226)
T ss_dssp EEEEEE-SSSHHHHHHHHHHHGGGSSEEEE----E--HHHHHHHCHHHHHHHHHHHHHTT-SEEEEEEEE-SSHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHhcCcceEEEE----C--hHHHhcCChhhHHHHHHHHHHhc-CCEeeeeeecccchHHHHH
Confidence 3467899999998888777653 666666 4 3444 899 99999999875 9999999999998765433
Q ss_pred -------HHcCCCEEEEcccccccccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 135 -------IKAGADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 135 -------~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
.+.|||++|+|+... .++++.+++.++++| ..+++.+-.+...+.+..+... ++...-+...-|.
T Consensus 75 ~~~~~~~~~~gaD~vTv~~~~G-~~tl~~~~~~a~~~~~~~~~~v~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~ 153 (226)
T PF00215_consen 75 AEAGFAAFELGADAVTVHPFAG-DDTLEAAVKAAKKHGRKGVFVVDLLSNPDSEDLQDLGLGVDQEIVHRAADLAAKAGV 153 (226)
T ss_dssp HHSCHHHHTTTESEEEEEGTTH-HHHHHHHHHHHHHTTESEEEEEESTTSTTHHHHHHHHCTHHHHHHHHHHHHHHHTTE
T ss_pred HHHhhhhhcCCCcEEEEeccCC-HHHHHHHHHHHhccCCcceEEEEecCCCCHHHHHhhhcccHHHHHHHHHHhhccccc
Confidence 578999999999974 778999999999998 4455555444444444431100 0000000000111
Q ss_pred CC---CccchhHHHHHHHH----HHHhhhcCCCC-eEEEecCCChhcHHHHHH-cCCcEEEEcccccCCCCHHHHHHHH
Q 023494 201 GG---QSFIESQVKKISDL----RRMCLEKGVNP-WIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 201 ~G---Q~f~~~~l~kI~~l----r~l~~~~~~~~-~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
.| +...+ .+++. ..+.+ |.+. ...+.||++..+.+.+.. .|+|++|+||+|++++||.++++++
T Consensus 154 ~G~v~~~~~~----~~~~~~~~~~~l~P--Gi~~~~~~~~~~~~~~~~~~~~~~~g~d~iiVGR~I~~a~dp~~aa~~i 226 (226)
T PF00215_consen 154 DGIVCSATEP----AIRKAGPNFKILTP--GIGAIQGAVAGGQKRATTPAAAKQAGADIIIVGRAITKAEDPREAAEEI 226 (226)
T ss_dssp EEEEETTTCH----HHHHHTTTSEEEEE--SBSSSTCEECSSHHCHHHHHHHHHTTGSEEEESHHHHTSSSHHHHHHHH
T ss_pred cCcccccccc----cccccccchhhccC--CCCcccccCcccccccccHHHHHhcCCEEEEEChHHhCCCCHHHHHhcC
Confidence 11 11111 22222 11111 2333 567888888887877765 8999999999999999999998875
|
In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A .... |
| >PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.1e-11 Score=104.63 Aligned_cols=188 Identities=20% Similarity=0.209 Sum_probs=135.1
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CC-CCeeEEEEecChhhHHHHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TD-LPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~-~~idaHLmv~dp~~~i~~~~~ 136 (281)
.+.|-+-..|..++.+.++.+.++|++.+++-. ++ | -..+.++.+++. .+ ..+-+.-. .+++ .++.+.+
T Consensus 11 ~~~~v~r~~~~~~~~~~~~a~~~gGi~~iEvt~-~~---~---~~~~~i~~l~~~~~~~~~iGaGTV-~~~~-~~~~a~~ 81 (206)
T PRK09140 11 PLIAILRGITPDEALAHVGALIEAGFRAIEIPL-NS---P---DPFDSIAALVKALGDRALIGAGTV-LSPE-QVDRLAD 81 (206)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeC-CC---c---cHHHHHHHHHHHcCCCcEEeEEec-CCHH-HHHHHHH
Confidence 466777777888888999999999999999952 22 2 245678877654 32 33333322 2323 6788999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+||++++..... .++++..++.|..++.-. .|+-|..+.+-..+|||-+ .|. ..+ .++.|+.+
T Consensus 82 aGA~fivsp~~~------~~v~~~~~~~~~~~~~G~--~t~~E~~~A~~~Gad~vk~---Fpa---~~~---G~~~l~~l 144 (206)
T PRK09140 82 AGGRLIVTPNTD------PEVIRRAVALGMVVMPGV--ATPTEAFAALRAGAQALKL---FPA---SQL---GPAGIKAL 144 (206)
T ss_pred cCCCEEECCCCC------HHHHHHHHHCCCcEEccc--CCHHHHHHHHHcCCCEEEE---CCC---CCC---CHHHHHHH
Confidence 999999988763 256777788888777764 4565545555556899975 452 122 24556666
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC----CCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA----KDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a----~dp~~~~~~l~~~~~ 275 (281)
+..++ .++++...||||++|+.++.++|+|.+.+||+||++ +++++.++++++.++
T Consensus 145 ~~~~~---~~ipvvaiGGI~~~n~~~~~~aGa~~vav~s~l~~~~~~~~~i~~~a~~~~~~~~ 204 (206)
T PRK09140 145 RAVLP---PDVPVFAVGGVTPENLAPYLAAGAAGFGLGSALYRPGQSAEEVAERARAFVAAYR 204 (206)
T ss_pred HhhcC---CCCeEEEECCCCHHHHHHHHHCCCeEEEEehHhcccccChHHHHHHHHHHHHHHh
Confidence 66653 137899999999999999999999999999999986 778888888877654
|
|
| >PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase | Back alignment and domain information |
|---|
Probab=99.34 E-value=1e-11 Score=123.15 Aligned_cols=186 Identities=19% Similarity=0.151 Sum_probs=132.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
.+.+.++.+.+.|++++|++..+- +. ..-.+.++++++.+ ....+.|+++| +++.+.+.|+|+||+..+..
T Consensus 308 ~~~~~l~~~l~~Gv~~vqlR~k~~---~~-~~~~~~a~~l~~~~-~~~~~~liind---~~~lA~~~~adGvHl~~~d~- 378 (502)
T PLN02898 308 STVDAVRAAIEGGATIVQLREKEA---ET-REFIEEAKACLAIC-RSYGVPLLIND---RVDVALACDADGVHLGQSDM- 378 (502)
T ss_pred hHHHHHHHHHHcCCCEEEEccCCC---CH-HHHHHHHHHHHHHH-HHhCCEEEEcC---hHHHHHhcCCCEEEeChHhc-
Confidence 467789999999999999986653 21 11123444444443 22356789998 88889999999999987642
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
.. ...+.....+..+|+..+ +.-+.....-..+|||.+..+.|...-....+..++.++++.+.. ++++.
T Consensus 379 --~~-~~~r~~~~~~~~iG~S~h--~~~e~~~a~~~gadyi~~gpif~t~tk~~~~~~g~~~~~~~~~~~-----~~Pv~ 448 (502)
T PLN02898 379 --PV-RLARSLLGPGKIIGVSCK--TPEQAEQAWKDGADYIGCGGVFPTNTKANNKTIGLDGLREVCEAS-----KLPVV 448 (502)
T ss_pred --CH-HHHHHhcCCCCEEEEeCC--CHHHHHHHhhcCCCEEEECCeecCCCCCCCCCCCHHHHHHHHHcC-----CCCEE
Confidence 12 122222223566777764 343333333456999999888876543223455677777776543 47899
Q ss_pred EecCCChhcHHHHHHcCCc---EEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 231 VDGGVGPKNAYKVIEAGAN---ALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD---~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.-|||+++|+.++.++|++ .+.++|+|++++||.++++++++.+.
T Consensus 449 aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~d~~~~~~~~~~~~~ 496 (502)
T PLN02898 449 AIGGISASNAASVMESGAPNLKGVAVVSALFDQEDVLKATRKLHAILT 496 (502)
T ss_pred EECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCCCHHHHHHHHHHHHH
Confidence 9999999999999999999 99999999999999999999988654
|
|
| >PRK09517 multifunctional thiamine-phosphate pyrophosphorylase/synthase/phosphomethylpyrimidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=1.2e-11 Score=128.28 Aligned_cols=200 Identities=17% Similarity=0.215 Sum_probs=139.2
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|++.-.+.+...+.+.++.+.++|+++|+++..+. +.-.+ ...++++++.+ ....+.++++| +++.+.++
T Consensus 7 y~It~~~~~~~~~~~~~~l~~~l~~g~~~iqlR~K~~---~~~~~-~~~a~~l~~l~-~~~~~~liind---~~~la~~~ 78 (755)
T PRK09517 7 YLVTDPVLGGGPEKVAGIVDSAISGGVSVVQLRDKNA---GVEDV-RAAAKELKELC-DARGVALVVND---RLDVAVEL 78 (755)
T ss_pred EEEECCccccCcccHHHHHHHHHhcCCCEEEEeCCCC---CHHHH-HHHHHHHHHHH-HHhCCeEEEeC---hHHHHHHc
Confidence 4466666555545677888899999999999996664 21111 23455555443 22357789999 78888899
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh---hc-----cCCEEEEEeecCCCCCCcc-chh
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV---LD-----VVDLVLIMSVNPGFGGQSF-IES 208 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~---l~-----~vD~IlvmsV~pG~~GQ~f-~~~ 208 (281)
|+| ||+..+.. .+ +..+.....+..+|++.+ ..+.++.. .. .+|||.+..+.|..+...- .+-
T Consensus 79 ~~d-VHlg~~dl---~~-~~~r~~~~~~~~iG~S~h---~~~e~~~~~~~~~~~g~~gaDYi~~Gpvf~T~tK~~~~~~l 150 (755)
T PRK09517 79 GLH-VHIGQGDT---PY-TQARRLLPAHLELGLTIE---TLDQLEAVIAQCAETGVALPDVIGIGPVASTATKPDAPPAL 150 (755)
T ss_pred CCC-eecCCCcC---CH-HHHHHhcCCCCEEEEeCC---CHHHHHHHHhhhccCCCCCCCEEEECCccccCCCCCCCCCC
Confidence 999 66666532 12 333333334567788765 33333322 12 2899999999886543322 234
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.++.++++++.... ..+++.+-|||+++|++++.++||+.+.+.|+|++++||.++++++++.++
T Consensus 151 G~~~l~~~~~~~~~--~~iPv~AiGGI~~~~~~~~~~~Ga~giAvisai~~a~d~~~a~~~l~~~~~ 215 (755)
T PRK09517 151 GVDGIAEIAAVAQD--HGIASVAIGGVGLRNAAELAATGIDGLCVVSAIMAAANPAAAARELRTAFQ 215 (755)
T ss_pred CHHHHHHHHHhcCc--CCCCEEEECCCCHHHHHHHHHcCCCEEEEehHhhCCCCHHHHHHHHHHHHH
Confidence 67788888877642 237899999999999999999999999999999999999999999887543
|
|
| >PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.8e-10 Score=101.19 Aligned_cols=189 Identities=21% Similarity=0.263 Sum_probs=128.3
Q ss_pred CceEeEEEeccCccCH----HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE--------e
Q 023494 57 DIIVSPSILSANFAKL----GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--------I 124 (281)
Q Consensus 57 ~~~i~pSila~D~~~l----~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm--------v 124 (281)
.+++|--....|+.+. .+..+.+.++|+..+.++ +++.++.+|+.+++|+..-+. .
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~a~a~~~~G~~~~~~~------------~~~~i~~i~~~~~~Pil~~~~~d~~~~~~~ 73 (221)
T PRK01130 6 GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRAN------------GVEDIKAIRAVVDVPIIGIIKRDYPDSEVY 73 (221)
T ss_pred CEEEEecCCCCCCCCCHHHHHHHHHHHHHCCCeEEEcC------------CHHHHHHHHHhCCCCEEEEEecCCCCCCce
Confidence 5677777778888753 455566778898877652 267899998888888763221 1
Q ss_pred cCh-hhHHHHHHHcCCCEEEEccccc--c-cccHHHHHHHHHH-cCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecC
Q 023494 125 VEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKD-LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP 198 (281)
Q Consensus 125 ~dp-~~~i~~~~~aGAd~Itvh~Ea~--~-~~~i~~~l~~ik~-~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~p 198 (281)
.++ .++++.+.++|||.|.+-.-.. + .++..++++.+++ .|+.+.... ++.+++..... .+|+|.+- .-
T Consensus 74 ~~~~~~~v~~a~~aGad~I~~d~~~~~~p~~~~~~~~i~~~~~~~~i~vi~~v---~t~ee~~~a~~~G~d~i~~~--~~ 148 (221)
T PRK01130 74 ITPTLKEVDALAAAGADIIALDATLRPRPDGETLAELVKRIKEYPGQLLMADC---STLEEGLAAQKLGFDFIGTT--LS 148 (221)
T ss_pred ECCCHHHHHHHHHcCCCEEEEeCCCCCCCCCCCHHHHHHHHHhCCCCeEEEeC---CCHHHHHHHHHcCCCEEEcC--Cc
Confidence 222 2468889999999887643210 0 1567889999999 777766543 35566655544 38988541 11
Q ss_pred CCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHH
Q 023494 199 GFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 199 G~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~ 267 (281)
|..+.. ..+..++.++++++.. +.++.+.||| +++++.++.++|||.+++||+|++.+++.+..
T Consensus 149 g~t~~~~~~~~~~~~~i~~i~~~~-----~iPvia~GGI~t~~~~~~~l~~GadgV~iGsai~~~~~~~~~~ 215 (221)
T PRK01130 149 GYTEETKKPEEPDFALLKELLKAV-----GCPVIAEGRINTPEQAKKALELGAHAVVVGGAITRPEEITKWF 215 (221)
T ss_pred eeecCCCCCCCcCHHHHHHHHHhC-----CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHhcCCHHHHHHH
Confidence 333221 2233456677776654 3689999999 59999999999999999999999866655443
|
|
| >COG0284 PyrF Orotidine-5'-phosphate decarboxylase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.25 E-value=5.4e-11 Score=107.59 Aligned_cols=201 Identities=18% Similarity=0.212 Sum_probs=134.4
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHHHHHc
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDFIKA 137 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~~~~a 137 (281)
-++++|+.+.++.++.+.+.+ + .+|...-++ |.+ .+|+.+++++++.. .++.+|||..|... +.+.+.+.
T Consensus 14 livaLD~~~~~~~~~~~~~~~-~--~~~~~Kvg~-~l~~~~g~~~~~el~~~~-~~VflDlK~~DIpnT~~~~~~~~~~~ 88 (240)
T COG0284 14 LIVALDVPTEEEALAFVDKLG-P--TVDFVKVGK-PLVAFFGADILEELKARG-KKVFLDLKLADIPNTVALAAKAAADL 88 (240)
T ss_pred eEEEECCCCHHHHHHHHHHhh-c--cccEEEEch-HHHHhccHHHHHHHHHhC-CceEEeeecccchHHHHHHHHHhhhc
Confidence 688999999998877777653 2 233333233 544 88999999998864 48999999999864 45566788
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcC-CcEEEEECCCCCHHHHHHhh---ccCCEEEEE---eecCCCCCCccchhHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVL---DVVDLVLIM---SVNPGFGGQSFIESQV 210 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G-~k~Glai~p~t~ie~~~~~l---~~vD~Ilvm---sV~pG~~GQ~f~~~~l 210 (281)
|+|++++|.... .+.+..+.+..+++| .-.+++.+++..-+.+...- +.-++|+-+ .-..|..|---.++
T Consensus 89 g~d~vtvH~~~G-~~~~~~~~e~~~~~~~~vl~vT~lts~~~~~~~~~~~~~~~~~~v~~~a~~~~~~G~dgvv~~~~-- 165 (240)
T COG0284 89 GADAVTVHAFGG-FDMLRAAKEALEAGGPFVLAVTSLTSMGELQLAELGINSSLEEQVLRLAKLAGEAGLDGVVCSAE-- 165 (240)
T ss_pred CCcEEEEeCcCC-HHHHHHHHHHHhhcCceEEEEEeCCCchhhhhhhccccchHHHHHHHHHHHhccCCceEEEcCHH--
Confidence 999999998863 556788888888888 44556666554443211110 001122211 12234444222233
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCCh------h----cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGP------K----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~------e----~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
..+++|+... .++.| +-.||.+ + |..+.+++|+|.+|+|+.|+.++||.+.++++.+.+..
T Consensus 166 -e~~~ir~~~g---~~~~i-ltPGIg~~~~~gdQ~~~~t~~~A~~~Gad~ivVGR~I~~a~~p~~a~~~i~~~~~~ 236 (240)
T COG0284 166 -EVAAIREILG---PDFLI-LTPGIGAGSQGGDQGRVMTPGEAVRAGADYIVVGRPITQAGDPVAAARAIAREIAR 236 (240)
T ss_pred -HHHHHHHhcC---CCcEE-ECCCcCcCcCCCCcccccCHHHHHhcCCCEEEEChhhhcCCChHHHHHHHHHHHHH
Confidence 3444444432 34544 7999998 3 47788899999999999999999999999988876543
|
|
| >cd00452 KDPG_aldolase KDPG and KHG aldolase | Back alignment and domain information |
|---|
Probab=99.25 E-value=2e-10 Score=100.17 Aligned_cols=171 Identities=16% Similarity=0.110 Sum_probs=119.7
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-.-|..+..+.++.+.++|+++++++..+.. ..+.++.+++. ++..+-+...+.+ ..++.+.++
T Consensus 5 ~~~~i~r~~~~~~~~~~~~~l~~~G~~~vev~~~~~~-------~~~~i~~l~~~~~~~~iGag~v~~~--~~~~~a~~~ 75 (190)
T cd00452 5 PLVAVLRGDDAEDALALAEALIEGGIRAIEITLRTPG-------ALEAIRALRKEFPEALIGAGTVLTP--EQADAAIAA 75 (190)
T ss_pred cEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCChh-------HHHHHHHHHHHCCCCEEEEEeCCCH--HHHHHHHHc
Confidence 3556666667778888889999999999999976542 34578888775 3455565554422 267889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||.++..... .++++..+++|..+-+-+. |+-|..+.+-..+|||.+ +|. .+...+-++.++
T Consensus 76 Ga~~i~~p~~~------~~~~~~~~~~~~~~i~gv~--t~~e~~~A~~~Gad~i~~---~p~------~~~g~~~~~~l~ 138 (190)
T cd00452 76 GAQFIVSPGLD------PEVVKAANRAGIPLLPGVA--TPTEIMQALELGADIVKL---FPA------EAVGPAYIKALK 138 (190)
T ss_pred CCCEEEcCCCC------HHHHHHHHHcCCcEECCcC--CHHHHHHHHHCCCCEEEE---cCC------cccCHHHHHHHH
Confidence 99999766542 3577888888876544332 444433333345999986 442 112344455555
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+..+ ++++.+-|||+++|+.++.++|+|.+++||.||+
T Consensus 139 ~~~~----~~p~~a~GGI~~~n~~~~~~~G~~~v~v~s~i~~ 176 (190)
T cd00452 139 GPFP----QVRFMPTGGVSLDNAAEWLAAGVVAVGGGSLLPK 176 (190)
T ss_pred hhCC----CCeEEEeCCCCHHHHHHHHHCCCEEEEEchhcch
Confidence 5432 3789999999999999999999999999999993
|
This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources. |
| >PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.22 E-value=8e-10 Score=96.44 Aligned_cols=172 Identities=16% Similarity=0.094 Sum_probs=120.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC-CCe-eEEEEecChhhHHHHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD-LPL-DVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~-~~i-daHLmv~dp~~~i~~~~~ 136 (281)
.+.|-+-.-|..+..+.++.+.++|++++++...+-. ..+.++.+++... ... ...+++.| .++.+.+
T Consensus 13 ~~~~v~r~~~~~~~~~~~~~~~~~Gv~~vqlr~k~~~-------~~e~~~~~~~~~~~~~~g~gtvl~~d---~~~~A~~ 82 (187)
T PRK07455 13 RAIAVIRAPDLELGLQMAEAVAAGGMRLIEITWNSDQ-------PAELISQLREKLPECIIGTGTILTLE---DLEEAIA 82 (187)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCCCC-------HHHHHHHHHHhCCCcEEeEEEEEcHH---HHHHHHH
Confidence 4777777778888888899999999999999754431 2455666555422 212 23444444 8899999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|||+++..... .+.++..+.+++..- +...|+-|..+.+-..+|||-+ +|... ...++.++.+
T Consensus 83 ~gAdgv~~p~~~------~~~~~~~~~~~~~~i--~G~~t~~e~~~A~~~Gadyv~~---Fpt~~-----~~G~~~l~~~ 146 (187)
T PRK07455 83 AGAQFCFTPHVD------PELIEAAVAQDIPII--PGALTPTEIVTAWQAGASCVKV---FPVQA-----VGGADYIKSL 146 (187)
T ss_pred cCCCEEECCCCC------HHHHHHHHHcCCCEE--cCcCCHHHHHHHHHCCCCEEEE---CcCCc-----ccCHHHHHHH
Confidence 999999887763 234555566666432 2245666655555567999986 56421 1235556666
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+..++ ++++...|||+++|++++.++|++.+.+||+|++.
T Consensus 147 ~~~~~----~ipvvaiGGI~~~n~~~~l~aGa~~vav~s~i~~~ 186 (187)
T PRK07455 147 QGPLG----HIPLIPTGGVTLENAQAFIQAGAIAVGLSGQLFPK 186 (187)
T ss_pred HhhCC----CCcEEEeCCCCHHHHHHHHHCCCeEEEEehhcccC
Confidence 66553 37899999999999999999999999999999975
|
|
| >cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP) | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.7e-09 Score=95.04 Aligned_cols=169 Identities=20% Similarity=0.195 Sum_probs=113.1
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCC-CeeEEEEecChhh-HHHHHHHcCCCEEEEccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL-PLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~-~idaHLmv~dp~~-~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
+.++.+.+.|+|++++...+. .| -...++..+.|++.+.. ...|-+.+++... ..+.+.+.|+|+|++|...
T Consensus 10 ed~~~a~~~Gvd~ig~i~~~~--s~-R~v~~~~a~~l~~~~~~~~~~V~v~vn~~~~~i~~ia~~~~~d~Vqlhg~e--- 83 (203)
T cd00405 10 EDALAAAEAGADAIGFIFAPK--SP-RYVSPEQAREIVAALPPFVKRVGVFVNEDLEEILEIAEELGLDVVQLHGDE--- 83 (203)
T ss_pred HHHHHHHHcCCCEEEEecCCC--CC-CCCCHHHHHHHHHhCCCCCcEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC---
Confidence 457788889999999965442 12 13457788888776432 3456667776543 4556678999999999863
Q ss_pred ccHHHHHHHHHH-cCCcEE--EEECCCCCHHHHHHhhccCCEEEEEeecCCC---CCCccchhHHHHHHHHHHHhhhcCC
Q 023494 152 IHLHRTLNQIKD-LGAKAG--VVLNPATSLSAIECVLDVVDLVLIMSVNPGF---GGQSFIESQVKKISDLRRMCLEKGV 225 (281)
Q Consensus 152 ~~i~~~l~~ik~-~G~k~G--lai~p~t~ie~~~~~l~~vD~IlvmsV~pG~---~GQ~f~~~~l~kI~~lr~l~~~~~~ 225 (281)
++ +.++.+|+ .|.++. +.++.++..+....+...+||+++=+..++. .|+.+.-+.+. +++ .
T Consensus 84 -~~-~~~~~l~~~~~~~~i~~i~~~~~~~~~~~~~~~~~aD~il~dt~~~~~~Gg~g~~~~~~~l~---~~~-------~ 151 (203)
T cd00405 84 -SP-EYCAQLRARLGLPVIKAIRVKDEEDLEKAAAYAGEVDAILLDSKSGGGGGGTGKTFDWSLLR---GLA-------S 151 (203)
T ss_pred -CH-HHHHHHHhhcCCcEEEEEecCChhhHHHhhhccccCCEEEEcCCCCCCCCCCcceEChHHhh---ccc-------c
Confidence 12 34555555 366665 4444444444334555678999875543322 35666544443 332 1
Q ss_pred CCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCC
Q 023494 226 NPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGA 260 (281)
Q Consensus 226 ~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a 260 (281)
..++.+.||||++|+.++++.| ++.+.++|+|..+
T Consensus 152 ~~PvilaGGI~~~Nv~~~i~~~~~~gvdv~S~ie~~ 187 (203)
T cd00405 152 RKPVILAGGLTPDNVAEAIRLVRPYGVDVSSGVETS 187 (203)
T ss_pred CCCEEEECCCChHHHHHHHHhcCCCEEEcCCcccCC
Confidence 3688899999999999999999 9999999999976
|
Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes. |
| >cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.8e-09 Score=95.91 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=123.6
Q ss_pred ccCCCCCceEeEEEeccCcc----CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeE----EE
Q 023494 51 DKFSKSDIIVSPSILSANFA----KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV----HL 122 (281)
Q Consensus 51 ~~~~~~~~~i~pSila~D~~----~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~ida----HL 122 (281)
++++. -+++|.-....++. ...+..+.+.++|+..+.+ + +++.++.+|+.+++|+.. |+
T Consensus 5 ~~~~~-~~~~~~~~~~~~~~~~~~~i~~~a~~~~~~G~~~~~~----~--------~~~~~~~i~~~~~iPil~~~~~~~ 71 (219)
T cd04729 5 EQLKG-GLIVSCQALPGEPLHSPEIMAAMALAAVQGGAVGIRA----N--------GVEDIRAIRARVDLPIIGLIKRDY 71 (219)
T ss_pred HHhcC-CeEEEccCCCCCCcCcHHHHHHHHHHHHHCCCeEEEc----C--------CHHHHHHHHHhCCCCEEEEEecCC
Confidence 34444 45666666666555 4667777888899876542 1 346788888777788753 21
Q ss_pred -----EecCh-hhHHHHHHHcCCCEEEEccccc--c-cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 123 -----MIVEP-EQRVPDFIKAGADIVSVHCEQS--S-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 123 -----mv~dp-~~~i~~~~~aGAd~Itvh~Ea~--~-~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
.+ +| ...++.+.++|||.|.+-.-.. + .+++.+++++++++| ..-+.....|+-+.....-..+|+|.+
T Consensus 72 ~~~~~~i-g~~~~~~~~a~~aGad~I~~~~~~~~~p~~~~~~~~i~~~~~~g-~~~iiv~v~t~~ea~~a~~~G~d~i~~ 149 (219)
T cd04729 72 PDSEVYI-TPTIEEVDALAAAGADIIALDATDRPRPDGETLAELIKRIHEEY-NCLLMADISTLEEALNAAKLGFDIIGT 149 (219)
T ss_pred CCCCcee-CCCHHHHHHHHHcCCCEEEEeCCCCCCCCCcCHHHHHHHHHHHh-CCeEEEECCCHHHHHHHHHcCCCEEEc
Confidence 11 12 1257888999999888743210 0 136889999999998 333333444444333322335898743
Q ss_pred EeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHH
Q 023494 194 MSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 194 msV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~ 265 (281)
- .-|+.++. .....++-++++++.. +.++.+.||| +++++.++.++|||.+++||+|++.+||..
T Consensus 150 ~--~~g~t~~~~~~~~~~~~~l~~i~~~~-----~ipvia~GGI~~~~~~~~~l~~GadgV~vGsal~~~~~~~~ 217 (219)
T cd04729 150 T--LSGYTEETAKTEDPDFELLKELRKAL-----GIPVIAEGRINSPEQAAKALELGADAVVVGSAITRPEHITG 217 (219)
T ss_pred c--CccccccccCCCCCCHHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEchHHhChHhHhh
Confidence 1 12443321 1122356666666654 3689999999 599999999999999999999999888753
|
This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates. |
| >PRK08999 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=3.8e-10 Score=105.07 Aligned_cols=179 Identities=14% Similarity=0.081 Sum_probs=119.3
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|+|.-.+.+ ..+.+.++.+.+.|++++|+...+-. ...-...++++++.+ ...++.|.++| +++.+.+.
T Consensus 133 y~it~~~~~~~-~~~~~~~~~~l~~g~~~vqlR~k~~~----~~~~~~~~~~l~~~~-~~~~~~liind---~~~la~~~ 203 (312)
T PRK08999 133 YLITPEGEDGD-AAFLARLERALAAGIRLIQLRAPQLP----PAAYRALARAALGLC-RRAGAQLLLNG---DPELAEDL 203 (312)
T ss_pred EEEECcccccc-HHHHHHHHHHHHCCCcEEEEeCCCCC----HHHHHHHHHHHHHHH-HHhCCEEEEEC---cHHHHHhc
Confidence 34555433321 23556777777899999999876642 111134455555543 22356778888 78889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|+|+||+..... . ..+. +. ...+..+|++.+ ..+.+.+.. ..+|||.+..+.|..+-....+..++.++++
T Consensus 204 ~~~GvHl~~~d~--~-~~~~-r~-~~~~~~ig~S~h---~~~~~~~a~~~~~dyi~~gpvf~t~tk~~~~~~g~~~~~~~ 275 (312)
T PRK08999 204 GADGVHLTSAQL--A-ALAA-RP-LPAGRWVAASCH---DAEELARAQRLGVDFAVLSPVQPTASHPGAAPLGWEGFAAL 275 (312)
T ss_pred CCCEEEcChhhc--C-hHhh-cc-CCCCCEEEEecC---CHHHHHHHHhcCCCEEEECCCcCCCCCCCCCCCCHHHHHHH
Confidence 999999998752 1 1111 11 123456777764 333344432 3599999998887654322345567777777
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
++.. ++++.+-|||+++|+.++.++|+|.+.+-|+|+
T Consensus 276 ~~~~-----~~Pv~AiGGI~~~~~~~~~~~g~~gva~i~~~~ 312 (312)
T PRK08999 276 IAGV-----PLPVYALGGLGPGDLEEAREHGAQGIAGIRGLW 312 (312)
T ss_pred HHhC-----CCCEEEECCCCHHHHHHHHHhCCCEEEEEEEeC
Confidence 7654 478999999999999999999999999999875
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.7e-09 Score=96.51 Aligned_cols=143 Identities=15% Similarity=0.249 Sum_probs=103.4
Q ss_pred HHHHHcCcCCCCCeeEEEEecCh----hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEP----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 180 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp----~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~ 180 (281)
+.++.+++..+.++.+-++..++ .++++.+.++|+|.|.+|... ..+.++.+++.++.++..+.+ .+.
T Consensus 43 ~~~~~i~~~~~~~~~v~~i~~~~~~~~~~~~~~~~~~g~d~v~l~~~~-----~~~~~~~~~~~~i~~i~~v~~---~~~ 114 (236)
T cd04730 43 AEIRKIRALTDKPFGVNLLVPSSNPDFEALLEVALEEGVPVVSFSFGP-----PAEVVERLKAAGIKVIPTVTS---VEE 114 (236)
T ss_pred HHHHHHHHhcCCCeEEeEecCCCCcCHHHHHHHHHhCCCCEEEEcCCC-----CHHHHHHHHHcCCEEEEeCCC---HHH
Confidence 45566665444577888898763 356888999999999998652 356788888889888876643 344
Q ss_pred HHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-hcHHHHHHcCCcEEEEccccc
Q 023494 181 IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 181 ~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~~~~aGAD~~VvGSaIf 258 (281)
++.+.+ .+|+|.+.+..+|..+..+....++.++++++.. +.++.+.|||+. +++.+++++|||.+++||+++
T Consensus 115 ~~~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~-----~~Pvi~~GGI~~~~~v~~~l~~GadgV~vgS~l~ 189 (236)
T cd04730 115 ARKAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV-----DIPVIAAGGIADGRGIAAALALGADGVQMGTRFL 189 (236)
T ss_pred HHHHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCcEEEEchhhh
Confidence 454433 4899988665444333333234466677776654 368999999996 999999999999999999998
Q ss_pred CC
Q 023494 259 GA 260 (281)
Q Consensus 259 ~a 260 (281)
+.
T Consensus 190 ~~ 191 (236)
T cd04730 190 AT 191 (236)
T ss_pred cC
Confidence 75
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=99.11 E-value=7.8e-09 Score=92.19 Aligned_cols=179 Identities=17% Similarity=0.221 Sum_probs=122.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+.+.|+|++|+==.|+.+. ......+.++++++..+.|+.+.=-+.+++ .++.+.++|||.|.+..+.
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~-~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e-~~~~~~~~Gad~vvigs~~-- 105 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKG-GEPVNLELIEEIVKAVGIPVQVGGGIRSLE-DIERLLDLGVSRVIIGTAA-- 105 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCcccc-CCCCCHHHHHHHHHhcCCCEEEeCCcCCHH-HHHHHHHcCCCEEEECchH--
Confidence 334445566678999998854444332 234567889999887777777766667766 4567778999999988774
Q ss_pred cccHHHHHHHHHHcCC-cEEEEEC---------------CCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHH
Q 023494 151 TIHLHRTLNQIKDLGA-KAGVVLN---------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~Glai~---------------p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
..++..+.+..++.|. ++.+++. +.++.+.++.+.+. +|.++++.+...-..+. ..++.|
T Consensus 106 l~dp~~~~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~~~g~~~g---~~~~~i 182 (234)
T cd04732 106 VKNPELVKELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDISRDGTLSG---PNFELY 182 (234)
T ss_pred HhChHHHHHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeecCCCccCC---CCHHHH
Confidence 3556556666667775 5555542 33445556666554 89999988754211111 224556
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+++++.. ++++.+.|||+ .+++.++.+.|+|.+++||+++...
T Consensus 183 ~~i~~~~-----~ipvi~~GGi~~~~di~~~~~~Ga~gv~vg~~~~~~~ 226 (234)
T cd04732 183 KELAAAT-----GIPVIASGGVSSLDDIKALKELGVAGVIVGKALYEGK 226 (234)
T ss_pred HHHHHhc-----CCCEEEecCCCCHHHHHHHHHCCCCEEEEeHHHHcCC
Confidence 6666543 46899999999 7789999999999999999998654
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=6e-09 Score=92.81 Aligned_cols=187 Identities=17% Similarity=0.097 Sum_probs=130.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC----CCCeeEEEEecChhhHHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT----DLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t----~~~idaHLmv~dp~~~i~~~ 134 (281)
.+.|-+-.-|..+..+..+.|.++|+..+++ +| +..-..+.++.+++.. +..+-+-- |.+++ -++.+
T Consensus 14 ~vi~vir~~~~~~a~~~~~al~~~Gi~~iEi-----t~--~~~~a~~~i~~l~~~~~~~p~~~vGaGT-V~~~~-~~~~a 84 (213)
T PRK06552 14 GVVAVVRGESKEEALKISLAVIKGGIKAIEV-----TY--TNPFASEVIKELVELYKDDPEVLIGAGT-VLDAV-TARLA 84 (213)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEE-----EC--CCccHHHHHHHHHHHcCCCCCeEEeeee-CCCHH-HHHHH
Confidence 4777777778888888889999999999988 22 2334667888887642 23333322 24544 56788
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
.++||+++.-+.- -.++++.++++|+-.---. .|+-|....+-..+|+|-+ +|.- .+ .++.|+
T Consensus 85 ~~aGA~FivsP~~------~~~v~~~~~~~~i~~iPG~--~T~~E~~~A~~~Gad~vkl---FPa~---~~---G~~~ik 147 (213)
T PRK06552 85 ILAGAQFIVSPSF------NRETAKICNLYQIPYLPGC--MTVTEIVTALEAGSEIVKL---FPGS---TL---GPSFIK 147 (213)
T ss_pred HHcCCCEEECCCC------CHHHHHHHHHcCCCEECCc--CCHHHHHHHHHcCCCEEEE---CCcc---cC---CHHHHH
Confidence 9999999875543 2467888888886554322 2455555555556999976 5521 12 244466
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC------CCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a------~dp~~~~~~l~~~~~ 275 (281)
.++..++ ++++...||||++|+.+++++|++.+.+||.|+.. +++++.++++.+.++
T Consensus 148 ~l~~~~p----~ip~~atGGI~~~N~~~~l~aGa~~vavgs~l~~~~~~~~~~~i~~~a~~~~~~~~ 210 (213)
T PRK06552 148 AIKGPLP----QVNVMVTGGVNLDNVKDWFAAGADAVGIGGELNKLASQGDFDLITEKAKKYMSSLR 210 (213)
T ss_pred HHhhhCC----CCEEEEECCCCHHHHHHHHHCCCcEEEEchHHhCccccCCHHHHHHHHHHHHHHHH
Confidence 6666554 37899999999999999999999999999999976 456666666665443
|
|
| >TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1 | Back alignment and domain information |
|---|
Probab=99.10 E-value=4.3e-09 Score=96.56 Aligned_cols=190 Identities=19% Similarity=0.253 Sum_probs=125.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+|..+- ++-+.++++|+= -||--.-+|. -.-+|+.|++|++..++|+....+... ..-++.+.++
T Consensus 15 mdv~~~-eqa~iae~aga~----avm~le~~p~d~r~~ggv~R~~~p~~I~~I~~~V~iPVig~~kigh-~~Ea~~L~~~ 88 (287)
T TIGR00343 15 MDVVNP-EQAKIAEEAGAV----AVMALERVPADIRASGGVARMSDPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEAL 88 (287)
T ss_pred EEeCCH-HHHHHHHHcCce----EEEeeccCchhhHhcCCeeecCCHHHHHHHHHhCCCCEEEEeeccH-HHHHHHHHHc
Confidence 466665 456788888873 3443333442 245899999999988899999777665 2235567899
Q ss_pred CCCEEEEccccccccc-HHHHHHHHHHcCCcEEEEECCCCCHHH-HHHhhccCCEEEEEeecCCCCCC------------
Q 023494 138 GADIVSVHCEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSA-IECVLDVVDLVLIMSVNPGFGGQ------------ 203 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~-i~~~l~~ik~~G~k~Glai~p~t~ie~-~~~~l~~vD~IlvmsV~pG~~GQ------------ 203 (281)
|+|+| .|+. ..+ ..+....+|.. .++ +.++....+++ +..+-..+|+|-- +-+.| +|.
T Consensus 89 GvDiI---DeTe-~lrPade~~~~~K~~-f~v-pfmad~~~l~EAlrai~~GadmI~T-t~e~g-Tg~v~~av~hlr~~~ 160 (287)
T TIGR00343 89 GVDYI---DESE-VLTPADWTFHIDKKK-FKV-PFVCGARDLGEALRRINEGAAMIRT-KGEAG-TGNIVEAVRHMRKIN 160 (287)
T ss_pred CCCEE---EccC-CCCcHHHHHHHHHHH-cCC-CEEccCCCHHHHHHHHHCCCCEEec-cccCC-CccHHHHHHHHHHHH
Confidence 99999 3432 222 45666666653 222 23344445544 4445556898842 22333 332
Q ss_pred -------cc------------chhHHHHHHHHHHHhhhcCCCCeEE--EecCC-ChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 204 -------SF------------IESQVKKISDLRRMCLEKGVNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 204 -------~f------------~~~~l~kI~~lr~l~~~~~~~~~I~--VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.. ....++.|+++++.. ++++. ..||| +++++..+.++|||.+++||+||+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~a~~~~~~~elLkei~~~~-----~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~ 235 (287)
T TIGR00343 161 EEIRQIQNMLEEEDLAAVAKELRVPVELLLEVLKLG-----KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSS 235 (287)
T ss_pred HHHHHHhcccchhHHhhhhcccCCCHHHHHHHHHhC-----CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCC
Confidence 00 112345555555432 36787 89999 89999999999999999999999999
Q ss_pred CHHHHHHHHHHhcC
Q 023494 262 DYAEAIKGIKTSKR 275 (281)
Q Consensus 262 dp~~~~~~l~~~~~ 275 (281)
||.+.++++.+.++
T Consensus 236 dP~~~akafv~ai~ 249 (287)
T TIGR00343 236 NPEKLAKAIVEATT 249 (287)
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999987653
|
This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals. |
| >PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.9e-09 Score=91.35 Aligned_cols=174 Identities=14% Similarity=0.069 Sum_probs=123.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-CCCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..+..+..+.+.+.|++.+++- -+...+.+.|+.+|+ +++..+-+...+++ .-.+.+.++
T Consensus 16 ~~iaV~r~~~~~~a~~i~~al~~~Gi~~iEit-------l~~~~~~~~I~~l~~~~p~~~IGAGTVl~~--~~a~~a~~a 86 (212)
T PRK05718 16 PVVPVIVINKLEDAVPLAKALVAGGLPVLEVT-------LRTPAALEAIRLIAKEVPEALIGAGTVLNP--EQLAQAIEA 86 (212)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHcCCCEEEEe-------cCCccHHHHHHHHHHHCCCCEEEEeeccCH--HHHHHHHHc
Confidence 47777887788888888899999999999983 234468899999986 47778888877766 357889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
||++++.+.-+ . ++++.++++|+..-- .-.||-|...-+--.+|+|=+ .|.- .+. ..+-|+.++
T Consensus 87 GA~FivsP~~~-----~-~vi~~a~~~~i~~iP--G~~TptEi~~a~~~Ga~~vKl---FPa~---~~g--g~~~lk~l~ 150 (212)
T PRK05718 87 GAQFIVSPGLT-----P-PLLKAAQEGPIPLIP--GVSTPSELMLGMELGLRTFKF---FPAE---ASG--GVKMLKALA 150 (212)
T ss_pred CCCEEECCCCC-----H-HHHHHHHHcCCCEeC--CCCCHHHHHHHHHCCCCEEEE---ccch---hcc--CHHHHHHHh
Confidence 99999988763 2 678888876654321 112555533333335788755 5531 111 234456666
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
..++ +.++.+.|||+++|+++++++|+-.++.||.+|+.+
T Consensus 151 ~p~p----~~~~~ptGGV~~~ni~~~l~ag~v~~vggs~L~~~~ 190 (212)
T PRK05718 151 GPFP----DVRFCPTGGISPANYRDYLALPNVLCIGGSWMVPKD 190 (212)
T ss_pred ccCC----CCeEEEeCCCCHHHHHHHHhCCCEEEEEChHhCCcc
Confidence 6554 478999999999999999999966666678888643
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.8e-08 Score=90.45 Aligned_cols=185 Identities=19% Similarity=0.207 Sum_probs=119.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.+.|++++|+-=.|+.. ....-....++++.+.++.|+.++==+.+++ .++.+.++|||.|++..+.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~-~~~~~~~~~i~~i~~~~~~~l~v~GGi~~~~-~~~~~~~~Ga~~v~iGs~~-- 108 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAF-EGERKNAEAIEKIIEAVGVPVQLGGGIRSAE-DAASLLDLGVDRVILGTAA-- 108 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhh-cCCcccHHHHHHHHHHcCCcEEEcCCcCCHH-HHHHHHHcCCCEEEEChHH--
Confidence 55666777888999999997666522 1222345677777665556666654445543 4677788999999998875
Q ss_pred cccHHHHHHHHHHcCC-cE--EEEEC----------C--C-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 151 TIHLHRTLNQIKDLGA-KA--GVVLN----------P--A-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~--Glai~----------p--~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
..++..+.+..+.+|. ++ ++.+. . . .+.+..+.+.. .++.|++..+.+.-.. .+..++.+
T Consensus 109 ~~~~~~~~~i~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~G~~~i~~~~~~~~g~~---~g~~~~~i 185 (241)
T PRK13585 109 VENPEIVRELSEEFGSERVMVSLDAKDGEVVIKGWTEKTGYTPVEAAKRFEELGAGSILFTNVDVEGLL---EGVNTEPV 185 (241)
T ss_pred hhChHHHHHHHHHhCCCcEEEEEEeeCCEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEEeecCCCCc---CCCCHHHH
Confidence 3445445555555553 33 34332 1 1 34555555544 3899998877542111 11234455
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC-CHHHHH
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK-DYAEAI 267 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~-dp~~~~ 267 (281)
+++++.. ++++.+-|||+ ++++..+.+.|++.+++||+++... ++.+..
T Consensus 186 ~~i~~~~-----~iPvia~GGI~~~~di~~~~~~Ga~gv~vgsa~~~~~~~~~~~~ 236 (241)
T PRK13585 186 KELVDSV-----DIPVIASGGVTTLDDLRALKEAGAAGVVVGSALYKGKFTLEEAI 236 (241)
T ss_pred HHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEEEHHHhcCCcCHHHHH
Confidence 6665543 47899999999 8999999999999999999999764 444433
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-08 Score=89.23 Aligned_cols=178 Identities=17% Similarity=0.206 Sum_probs=120.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+.+.|++++|+==.|+.+- ...-..++++.+++.++.|+.+.==+.+++ -++.+.++|||.+.+..+.
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~-g~~~~~~~i~~i~~~~~~pi~~ggGI~~~e-d~~~~~~~Ga~~vvlgs~~-- 104 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKE-GGPVNLPVIKKIVRETGVPVQVGGGIRSLE-DVEKLLDLGVDRVIIGTAA-- 104 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccc-CCCCcHHHHHHHHHhcCCCEEEeCCcCCHH-HHHHHHHcCCCEEEEChHH--
Confidence 445556677889999999822223221 122245788998887777777655555544 4577888999999988774
Q ss_pred cccHHHHHHHHHHcCC-cEEEEEC---------------CCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHH
Q 023494 151 TIHLHRTLNQIKDLGA-KAGVVLN---------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~Glai~---------------p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
..++..+.+.+++.|. ++.+++. +.++.+.++.+.+. +|.++++.+..-...+. ..++.+
T Consensus 105 l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~~g~~~g---~~~~~i 181 (230)
T TIGR00007 105 VENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISRDGTLSG---PNFELT 181 (230)
T ss_pred hhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecCCCCcCC---CCHHHH
Confidence 3556677777888873 4554433 22345556656554 89888887754211211 235556
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++++.. +.++.+-|||. .+.+..+.+.|||.+++||+++..
T Consensus 182 ~~i~~~~-----~ipvia~GGi~~~~di~~~~~~Gadgv~ig~a~~~~ 224 (230)
T TIGR00007 182 KELVKAV-----NVPVIASGGVSSIDDLIALKKLGVYGVIVGKALYEG 224 (230)
T ss_pred HHHHHhC-----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEeHHHHcC
Confidence 6665542 47899999999 789999999999999999998754
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.3e-08 Score=91.82 Aligned_cols=189 Identities=17% Similarity=0.202 Sum_probs=125.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|..+. ++-+.++++|+=. ||--.-+|. -.-+++.|++||+..++|+..-.+... ..-++.+.++|
T Consensus 14 ~v~~~-~qa~~ae~aga~~----v~~~~~~~~~~~~~~~v~R~~~~~~I~~Ik~~V~iPVIGi~K~~~-~~Ea~~L~eaG 87 (283)
T cd04727 14 DVTNA-EQARIAEEAGAVA----VMALERVPADIRAAGGVARMADPKMIKEIMDAVSIPVMAKVRIGH-FVEAQILEALG 87 (283)
T ss_pred EeCCH-HHHHHHHHcCceE----EeeeccCchhhhhcCCeeecCCHHHHHHHHHhCCCCeEEeeehhH-HHHHHHHHHcC
Confidence 55555 4567888888633 332111232 245899999999988899988555444 33466788999
Q ss_pred CCEEEEcccccccc-cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCC-------------
Q 023494 139 ADIVSVHCEQSSTI-HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQ------------- 203 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~-~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ------------- 203 (281)
+|+| .++. .. ...++++.+|..- . .+.++.-..+++...-. ..+|+|-- +.+ |++|.
T Consensus 88 vDiI---DaT~-r~rP~~~~~~~iK~~~-~-~l~MAD~stleEal~a~~~Gad~I~T-Tl~-gyT~~~~~~~~~~~~i~~ 159 (283)
T cd04727 88 VDMI---DESE-VLTPADEEHHIDKHKF-K-VPFVCGARNLGEALRRISEGAAMIRT-KGE-AGTGNVVEAVRHMRAVNG 159 (283)
T ss_pred CCEE---eccC-CCCcHHHHHHHHHHHc-C-CcEEccCCCHHHHHHHHHCCCCEEEe-cCC-CCCCcHHHHHHHHHHHHH
Confidence 9999 3431 22 2467888887642 1 23444455665544444 45998842 223 44443
Q ss_pred ------ccchh-----------HHHHHHHHHHHhhhcCCCCeEE--EecCC-ChhcHHHHHHcCCcEEEEcccccCCCCH
Q 023494 204 ------SFIES-----------QVKKISDLRRMCLEKGVNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 204 ------~f~~~-----------~l~kI~~lr~l~~~~~~~~~I~--VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp 263 (281)
.+.++ .++.|+++++.. ++++. ..||| +++++..+.++|||.+++||+||+++||
T Consensus 160 ~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~-----~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVGSAI~~a~dP 234 (283)
T cd04727 160 EIRKLQSMSEEELYAVAKEIQAPYELVKETAKLG-----RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSENP 234 (283)
T ss_pred HHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhc-----CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEcHHhhcCCCH
Confidence 22222 345566665542 36775 89999 8999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 023494 264 AEAIKGIKTSKR 275 (281)
Q Consensus 264 ~~~~~~l~~~~~ 275 (281)
.+.+++|++.+.
T Consensus 235 ~~~tk~f~~ai~ 246 (283)
T cd04727 235 EKRARAIVEAVT 246 (283)
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
|
Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings. |
| >PRK04302 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=2.6e-08 Score=88.95 Aligned_cols=164 Identities=18% Similarity=0.203 Sum_probs=106.8
Q ss_pred HHHHHHcCcCCCCCeeEEEEec-Chh-----hHHHHHHHcCCCEEEEcc-cc-cccccHHHHHHHHHHcCCcEEEEECCC
Q 023494 104 PLVVDALRPVTDLPLDVHLMIV-EPE-----QRVPDFIKAGADIVSVHC-EQ-SSTIHLHRTLNQIKDLGAKAGVVLNPA 175 (281)
Q Consensus 104 ~~~I~~ir~~t~~~idaHLmv~-dp~-----~~i~~~~~aGAd~Itvh~-Ea-~~~~~i~~~l~~ik~~G~k~Glai~p~ 175 (281)
...++.+++.+++++-+.=+-. +++ ..++++.++|+|++.+.. |- ....++.+.++.++++|+.+.+.+..
T Consensus 45 ~~~l~~v~~~~~i~v~aq~~~~~~~G~~tg~~~~~~l~~~G~~~vii~~ser~~~~~e~~~~v~~a~~~Gl~~I~~v~~- 123 (223)
T PRK04302 45 ALDIRRVAEEVDIPVYAQHVDPVEPGSHTGHILPEAVKDAGAVGTLINHSERRLTLADIEAVVERAKKLGLESVVCVNN- 123 (223)
T ss_pred HHHHHHHHHhcCCeEEeccCCCCCCCCchhhhHHHHHHHcCCCEEEEeccccccCHHHHHHHHHHHHHCCCeEEEEcCC-
Confidence 3445666555566665522211 112 247788999999888774 21 12346778899999999988864432
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecC-CCC-C-CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNP-GFG-G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANA 250 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~p-G~~-G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~ 250 (281)
.++++.+.. ..|+|.++++.. |.+ + +.-.|+.+ .++.+.+++...+.+|.+.|||+ ++.+..+.+.|+|.
T Consensus 124 --~~~~~~~~~~~~~~I~~~p~~~igt~~~~~~~~~~~i---~~~~~~ir~~~~~~pvi~GggI~~~e~~~~~~~~gadG 198 (223)
T PRK04302 124 --PETSAAAAALGPDYVAVEPPELIGTGIPVSKAKPEVV---EDAVEAVKKVNPDVKVLCGAGISTGEDVKAALELGADG 198 (223)
T ss_pred --HHHHHHHhcCCCCEEEEeCccccccCCCCCcCCHHHH---HHHHHHHHhccCCCEEEEECCCCCHHHHHHHHcCCCCE
Confidence 445555444 378888876532 332 1 11234443 33333333222247899999996 77888989999999
Q ss_pred EEEcccccCCCCHHHHHHHHHHh
Q 023494 251 LVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 251 ~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+++||++.+.+||.+.++++.+.
T Consensus 199 vlVGsa~l~~~~~~~~~~~~~~~ 221 (223)
T PRK04302 199 VLLASGVVKAKDPEAALRDLVSP 221 (223)
T ss_pred EEEehHHhCCcCHHHHHHHHHhh
Confidence 99999999999999998887653
|
|
| >PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=9.3e-09 Score=94.64 Aligned_cols=193 Identities=16% Similarity=0.220 Sum_probs=121.8
Q ss_pred cCccCHHHHHHHHHHcCCCeEEE------E-eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHV------D-VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHi------D-ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+|..+- ++.+..++.|.+.+-+ | +..|+ -...-+|+.|++||+..++|+-+-.++.. ..-.+.+.++|+
T Consensus 22 mdv~~~-~~a~iae~~g~~~v~~~~~~psd~~~~gg--~~Rm~~p~~I~aIk~~V~iPVigk~Righ-~~Ea~~L~~~Gv 97 (293)
T PRK04180 22 MDVVNA-EQAKIAEEAGAVAVMALERVPADIRAAGG--VARMADPKMIEEIMDAVSIPVMAKARIGH-FVEAQILEALGV 97 (293)
T ss_pred EEeCCH-HHHHHHHHhChHHHHHccCCCchHhhcCC--eeecCCHHHHHHHHHhCCCCeEEeehhhH-HHHHHHHHHcCC
Confidence 355554 4466777777654322 2 12231 12456899999999988899888555444 223556789999
Q ss_pred CEEEEccccccccc-HHHHHHHHHHcCCcEEEEECCCCCHHH-HHHhhccCCEEEEEeecCCCCCC--------------
Q 023494 140 DIVSVHCEQSSTIH-LHRTLNQIKDLGAKAGVVLNPATSLSA-IECVLDVVDLVLIMSVNPGFGGQ-------------- 203 (281)
Q Consensus 140 d~Itvh~Ea~~~~~-i~~~l~~ik~~G~k~Glai~p~t~ie~-~~~~l~~vD~IlvmsV~pG~~GQ-------------- 203 (281)
|+| .|+. ..+ ..+....+|.. .++ +.++.-..+++ +..+-..+|+|-- +-++|.+.-
T Consensus 98 DiI---D~Te-~lrpad~~~~~~K~~-f~~-~fmad~~~l~EAlrai~~GadmI~T-tge~gtg~v~~av~h~r~~~~~i 170 (293)
T PRK04180 98 DYI---DESE-VLTPADEEYHIDKWD-FTV-PFVCGARNLGEALRRIAEGAAMIRT-KGEAGTGNVVEAVRHMRQINGEI 170 (293)
T ss_pred CEE---eccC-CCCchHHHHHHHHHH-cCC-CEEccCCCHHHHHHHHHCCCCeeec-cCCCCCccHHHHHHHHHHHHHHH
Confidence 999 3432 222 44556666543 222 23344445544 4444556898742 224443320
Q ss_pred ----cc-----------chhHHHHHHHHHHHhhhcCCCCeEE--EecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHH
Q 023494 204 ----SF-----------IESQVKKISDLRRMCLEKGVNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 204 ----~f-----------~~~~l~kI~~lr~l~~~~~~~~~I~--VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~ 265 (281)
.+ ....++.|+++++.. ++++. ..||| +++++..+.++|||.+++||+||+++||.+
T Consensus 171 ~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~-----~iPVV~~AeGGI~TPedaa~vme~GAdgVaVGSaI~ks~dP~~ 245 (293)
T PRK04180 171 RRLTSMSEDELYTAAKELQAPYELVKEVAELG-----RLPVVNFAAGGIATPADAALMMQLGADGVFVGSGIFKSGDPEK 245 (293)
T ss_pred HHHhCCCHHHHHhhccccCCCHHHHHHHHHhC-----CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEEcHHhhcCCCHHH
Confidence 01 112244455555432 36776 89999 899999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 023494 266 AIKGIKTSKR 275 (281)
Q Consensus 266 ~~~~l~~~~~ 275 (281)
.+++|.+.+.
T Consensus 246 ~akafv~ai~ 255 (293)
T PRK04180 246 RARAIVEATT 255 (293)
T ss_pred HHHHHHHHHH
Confidence 9999988654
|
|
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.2e-07 Score=85.27 Aligned_cols=175 Identities=16% Similarity=0.109 Sum_probs=117.0
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
-.+..+.+.+.|+|++|+==.|+. ....-...++++|.+.+..|+.+.-=+.+.+ -++.++++||+.+.+..++.
T Consensus 37 p~~~a~~~~~~g~~~l~i~DLd~~--~~~~~n~~~i~~i~~~~~~~v~vgGGir~~e-dv~~~l~~Ga~~viigt~~~-- 111 (233)
T cd04723 37 PLDVARAYKELGFRGLYIADLDAI--MGRGDNDEAIRELAAAWPLGLWVDGGIRSLE-NAQEWLKRGASRVIVGTETL-- 111 (233)
T ss_pred HHHHHHHHHHCCCCEEEEEeCccc--cCCCccHHHHHHHHHhCCCCEEEecCcCCHH-HHHHHHHcCCCeEEEcceec--
Confidence 334556677789999998434442 1233456788888776666666655555533 56778899999999998863
Q ss_pred ccHHHHHHHHHHcCC-cEEEEECCC-----------CCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHH
Q 023494 152 IHLHRTLNQIKDLGA-KAGVVLNPA-----------TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~-k~Glai~p~-----------t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
.+ .-.-+.++++|- ++.+++... ++.+.++.+...++.+++..+..-..++...-+. ++++.+.
T Consensus 112 ~~-~~~~~~~~~~~~~~iivslD~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~di~~~G~~~g~~~~~---~~~i~~~ 187 (233)
T cd04723 112 PS-DDDEDRLAALGEQRLVLSLDFRGGQLLKPTDFIGPEELLRRLAKWPEELIVLDIDRVGSGQGPDLEL---LERLAAR 187 (233)
T ss_pred cc-hHHHHHHHhcCCCCeEEEEeccCCeeccccCcCCHHHHHHHHHHhCCeEEEEEcCccccCCCcCHHH---HHHHHHh
Confidence 34 444555666776 666655431 2445556655557888888876432333333333 3444443
Q ss_pred hhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 220 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
. +.++.+.|||+ .+.+..+.++|++.+|+||+++..
T Consensus 188 ~-----~ipvi~~GGi~s~edi~~l~~~G~~~vivGsal~~g 224 (233)
T cd04723 188 A-----DIPVIAAGGVRSVEDLELLKKLGASGALVASALHDG 224 (233)
T ss_pred c-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEEehHHHcC
Confidence 2 46899999999 799999999999999999999865
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.5e-07 Score=84.24 Aligned_cols=175 Identities=23% Similarity=0.284 Sum_probs=107.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEe--------cChh---hHHHHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMI--------VEPE---QRVPDFIK 136 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv--------~dp~---~~i~~~~~ 136 (281)
.+.++.++.+.+.|++.+-+= +.+++..++. .+.++..++-. .++. ..++.+.+
T Consensus 21 ~d~~~~~~~~~~~g~~av~v~-------------~~~~~~~~~~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~ 87 (235)
T cd00958 21 EDPEETVKLAAEGGADAVALT-------------KGIARAYGREYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVR 87 (235)
T ss_pred cCHHHHHHHHHhcCCCEEEeC-------------hHHHHhcccccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHH
Confidence 477888889999888876541 2222222111 11122222211 1112 13778899
Q ss_pred cCCCEEEEccccccc------ccHHHHHHHHHHcCCcEEEEECCC-------CCHHHHHH----hhc-cCCEEEEEeecC
Q 023494 137 AGADIVSVHCEQSST------IHLHRTLNQIKDLGAKAGVVLNPA-------TSLSAIEC----VLD-VVDLVLIMSVNP 198 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~------~~i~~~l~~ik~~G~k~Glai~p~-------t~ie~~~~----~l~-~vD~IlvmsV~p 198 (281)
.||+.+.+..-.... +.+.++.+.++++|+++-+..... ...+.+.. ..+ .+|||-+- .+
T Consensus 88 ~Ga~~v~~~~~~~~~~~~~~~~~i~~v~~~~~~~g~~~iie~~~~g~~~~~~~~~~~i~~~~~~a~~~GaD~Ik~~--~~ 165 (235)
T cd00958 88 LGADAVGVTVYVGSEEEREMLEELARVAAEAHKYGLPLIAWMYPRGPAVKNEKDPDLIAYAARIGAELGADIVKTK--YT 165 (235)
T ss_pred CCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCCcccCccCHHHHHHHHHHHHHHCCCEEEec--CC
Confidence 999988665432111 146666777788999987755431 01122222 222 48999661 11
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-------hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-------KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-------e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+ .++.++++.+.. ..++.+.||++. ++++.+.++||+.+.+||+||+++||.+.+++++
T Consensus 166 ---~------~~~~~~~i~~~~-----~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg~~i~~~~dp~~~~~~~~ 231 (235)
T cd00958 166 ---G------DAESFKEVVEGC-----PVPVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVGRNIFQRPDPVAMLRAIS 231 (235)
T ss_pred ---C------CHHHHHHHHhcC-----CCCEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEechhhhcCCCHHHHHHHHH
Confidence 1 244455555432 356778899865 6699999999999999999999999999999998
Q ss_pred Hh
Q 023494 272 TS 273 (281)
Q Consensus 272 ~~ 273 (281)
+.
T Consensus 232 ~~ 233 (235)
T cd00958 232 AV 233 (235)
T ss_pred HH
Confidence 74
|
Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies. |
| >PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4 | Back alignment and domain information |
|---|
Probab=98.87 E-value=7.4e-08 Score=87.96 Aligned_cols=194 Identities=25% Similarity=0.344 Sum_probs=131.2
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||- ++-+ .+..+..+.+.++|++.|-| .-|..| |.=+.+.++.+|+.++.|+...=.+-||. -+.....+
T Consensus 57 aSPs~G~i~~~-~d~~~~a~~y~~~GA~aiSV-lTe~~~---F~Gs~~dL~~v~~~~~~PvL~KDFIid~~-QI~eA~~~ 130 (254)
T PF00218_consen 57 ASPSKGDIRED-FDPAEIAKAYEEAGAAAISV-LTEPKF---FGGSLEDLRAVRKAVDLPVLRKDFIIDPY-QIYEARAA 130 (254)
T ss_dssp EETTTEESBSS--SHHHHHHHHHHTT-SEEEE-E--SCC---CHHHHHHHHHHHHHSSS-EEEES---SHH-HHHHHHHT
T ss_pred CCCCCCccCcc-CCHHHHHHHHHhcCCCEEEE-ECCCCC---CCCCHHHHHHHHHHhCCCcccccCCCCHH-HHHHHHHc
Confidence 57763 3333 47888888999999998866 444322 33356678888887788888765666665 35567889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||.|.+.....+.+.+.++++.+++.|+.+-+-++. .++++..+. .+++|.+=..+. +.|. -.+++-.++
T Consensus 131 GADaVLLI~~~L~~~~l~~l~~~a~~lGle~lVEVh~---~~El~~al~~~a~iiGINnRdL----~tf~-vd~~~~~~l 202 (254)
T PF00218_consen 131 GADAVLLIAAILSDDQLEELLELAHSLGLEALVEVHN---EEELERALEAGADIIGINNRDL----KTFE-VDLNRTEEL 202 (254)
T ss_dssp T-SEEEEEGGGSGHHHHHHHHHHHHHTT-EEEEEESS---HHHHHHHHHTT-SEEEEESBCT----TTCC-BHTHHHHHH
T ss_pred CCCEeehhHHhCCHHHHHHHHHHHHHcCCCeEEEECC---HHHHHHHHHcCCCEEEEeCccc----cCcc-cChHHHHHH
Confidence 9999999988765566789999999999999999973 333444333 477775533322 2232 124455566
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
...+++ +..+..-+||+ ++++..+.++|+|.|.+|+++.+++||.+.+++|
T Consensus 203 ~~~ip~---~~~~iseSGI~~~~d~~~l~~~G~davLVGe~lm~~~d~~~~~~~L 254 (254)
T PF00218_consen 203 APLIPK---DVIVISESGIKTPEDARRLARAGADAVLVGEALMRSPDPGEALREL 254 (254)
T ss_dssp HCHSHT---TSEEEEESS-SSHHHHHHHCTTT-SEEEESHHHHTSSSHHHHHHHH
T ss_pred HhhCcc---ceeEEeecCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHhcC
Confidence 676664 35666899999 8999999999999999999999999999998875
|
1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A .... |
| >PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: |
Back alignment and domain information |
|---|
Probab=98.85 E-value=4.6e-07 Score=78.93 Aligned_cols=174 Identities=22% Similarity=0.269 Sum_probs=110.2
Q ss_pred HHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh---------hhHHHHHHHcCCCEEEEcc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP---------EQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp---------~~~i~~~~~aGAd~Itvh~ 146 (281)
-+.+..+|+.-|-.. |++-|+++|+.+++|+.==.|-.-+ .+.++.+.++|||+|-+-+
T Consensus 5 A~Aa~~gGA~giR~~------------~~~dI~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIAlDa 72 (192)
T PF04131_consen 5 AKAAEEGGAVGIRAN------------GVEDIRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIALDA 72 (192)
T ss_dssp HHHHHHCT-SEEEEE------------SHHHHHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEEEE-
T ss_pred HHHHHHCCceEEEcC------------CHHHHHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEEEec
Confidence 345667788766542 6788999999888887765554322 2457788999999999876
Q ss_pred cccc-cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHHHHHHHHHHHhhhc
Q 023494 147 EQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEK 223 (281)
Q Consensus 147 Ea~~-~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l~kI~~lr~l~~~~ 223 (281)
-.-. ..++.++++++|+.+..+.-.+. .+|+...-.+ .+|+|. +.--|+....- ..-.++-|+++++.
T Consensus 73 T~R~Rp~~l~~li~~i~~~~~l~MADis---t~ee~~~A~~~G~D~I~--TTLsGYT~~t~~~~pD~~lv~~l~~~---- 143 (192)
T PF04131_consen 73 TDRPRPETLEELIREIKEKYQLVMADIS---TLEEAINAAELGFDIIG--TTLSGYTPYTKGDGPDFELVRELVQA---- 143 (192)
T ss_dssp SSSS-SS-HHHHHHHHHHCTSEEEEE-S---SHHHHHHHHHTT-SEEE---TTTTSSTTSTTSSHHHHHHHHHHHT----
T ss_pred CCCCCCcCHHHHHHHHHHhCcEEeeecC---CHHHHHHHHHcCCCEEE--cccccCCCCCCCCCCCHHHHHHHHhC----
Confidence 4210 25689999999999933333453 5655555444 489884 45567754332 33346666666542
Q ss_pred CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 224 GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 224 ~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.++...|+|+ ++.+.++.++||+.+||||+|++ |....+++.+.++
T Consensus 144 --~~pvIaEGri~tpe~a~~al~~GA~aVVVGsAITr---P~~It~~F~~ai~ 191 (192)
T PF04131_consen 144 --DVPVIAEGRIHTPEQAAKALELGAHAVVVGSAITR---PQEITKRFVDAIK 191 (192)
T ss_dssp --TSEEEEESS--SHHHHHHHHHTT-SEEEE-HHHH----HHHHHHHHHHHCH
T ss_pred --CCcEeecCCCCCHHHHHHHHhcCCeEEEECcccCC---HHHHHHHHHHHHh
Confidence 46788999998 99999999999999999999996 6667777766553
|
; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B. |
| >COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.4e-08 Score=88.44 Aligned_cols=196 Identities=23% Similarity=0.316 Sum_probs=143.3
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||- +..|+ +..+..+..+++|+..|-| .-|.+| |.=.++.++.+|..+++|+.++=.+-||. .+..+...
T Consensus 55 aSPS~G~ir~d~-dp~~ia~~Ye~~GAa~iSV-LTd~~~---F~Gs~e~L~~v~~~v~~PvL~KDFiiD~y-QI~~Ar~~ 128 (254)
T COG0134 55 ASPSKGLIREDF-DPVEIAKAYEEGGAAAISV-LTDPKY---FQGSFEDLRAVRAAVDLPVLRKDFIIDPY-QIYEARAA 128 (254)
T ss_pred CCCCCCcccccC-CHHHHHHHHHHhCCeEEEE-ecCccc---cCCCHHHHHHHHHhcCCCeeeccCCCCHH-HHHHHHHc
Confidence 57887 56665 6667788899999998866 455433 33467889999888889999888888875 46677889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||.|-+.....+.+.+.++.+.+++.|+.+-+.++....+++... -.+++|.+= +-.... | .-.++.-.++.
T Consensus 129 GADavLLI~~~L~~~~l~el~~~A~~LGm~~LVEVh~~eEl~rAl~--~ga~iIGIN--nRdL~t--f-~vdl~~t~~la 201 (254)
T COG0134 129 GADAVLLIVAALDDEQLEELVDRAHELGMEVLVEVHNEEELERALK--LGAKIIGIN--NRDLTT--L-EVDLETTEKLA 201 (254)
T ss_pred CcccHHHHHHhcCHHHHHHHHHHHHHcCCeeEEEECCHHHHHHHHh--CCCCEEEEe--CCCcch--h-eecHHHHHHHH
Confidence 9999999887654556899999999999999999975444433332 235555331 111111 2 11233445555
Q ss_pred HHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
.++++ +..+..-.||+ ++++..+.++|||.|-+|+++.+++|+.++++++.
T Consensus 202 ~~~p~---~~~~IsESGI~~~~dv~~l~~~ga~a~LVG~slM~~~~~~~a~~~l~ 253 (254)
T COG0134 202 PLIPK---DVILISESGISTPEDVRRLAKAGADAFLVGEALMRADDPEEALRELL 253 (254)
T ss_pred hhCCC---CcEEEecCCCCCHHHHHHHHHcCCCEEEecHHHhcCCCHHHHHHHhh
Confidence 55554 35566799999 99999999999999999999999999998888764
|
|
| >PRK13957 indole-3-glycerol-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.82 E-value=5e-07 Score=82.10 Aligned_cols=183 Identities=15% Similarity=0.131 Sum_probs=133.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.++++|+..|-|. -|++| +....+.++.+|+.++.|+...=.+-||.... ....+|||.|.++....+
T Consensus 62 d~~~~A~~y~~~GA~aISVl-Te~~~---F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~-ea~~~GADavLLI~~~L~ 136 (247)
T PRK13957 62 HPVQIAKTYETLGASAISVL-TDQSY---FGGSLEDLKSVSSELKIPVLRKDFILDEIQIR-EARAFGASAILLIVRILT 136 (247)
T ss_pred CHHHHHHHHHHCCCcEEEEE-cCCCc---CCCCHHHHHHHHHhcCCCEEeccccCCHHHHH-HHHHcCCCEEEeEHhhCC
Confidence 67777888999999988663 45533 56678889999988889998888888877544 455699999999988754
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+.+.++++.+++.|+.+-+-++....+ +..+. .++.|.+=..+. . .|. -.++.-.++..++++ +..+
T Consensus 137 ~~~l~~l~~~a~~lGle~LVEVh~~~El---~~a~~~ga~iiGINnRdL--~--t~~-vd~~~~~~L~~~ip~---~~~~ 205 (247)
T PRK13957 137 PSQIKSFLKHASSLGMDVLVEVHTEDEA---KLALDCGAEIIGINTRDL--D--TFQ-IHQNLVEEVAAFLPP---NIVK 205 (247)
T ss_pred HHHHHHHHHHHHHcCCceEEEECCHHHH---HHHHhCCCCEEEEeCCCC--c--cce-ECHHHHHHHHhhCCC---CcEE
Confidence 4579999999999999999999743333 33333 567664422211 1 121 123445566677653 2344
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
..-+||+ ++++..+.++ +|.|.+|+++.+++||.+.+++|
T Consensus 206 IsESGI~t~~d~~~l~~~-~davLvG~~lm~~~d~~~~~~~l 246 (247)
T PRK13957 206 VGESGIESRSDLDKFRKL-VDAALIGTYFMEKKDIRKAWLSL 246 (247)
T ss_pred EEcCCCCCHHHHHHHHHh-CCEEEECHHHhCCCCHHHHHHHh
Confidence 4579999 7899998887 99999999999999999888765
|
|
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=98.81 E-value=9.4e-07 Score=79.58 Aligned_cols=187 Identities=20% Similarity=0.150 Sum_probs=117.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCc-ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGR-FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~-fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+..+.++.+++.|++++|+==.|+. .. -....+.++++++..+.|+.+-==+.+++ .++.+.+.|++.+.+.-..
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~--~~~~~~~i~~i~~~~~~pv~~~GGI~s~~-d~~~~l~~G~~~v~ig~~~- 103 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEG--RETMLDVVERVAEEVFIPLTVGGGIRSLE-DARRLLRAGADKVSINSAA- 103 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCccccc--CcccHHHHHHHHHhCCCCEEEeCCCCCHH-HHHHHHHcCCceEEECchh-
Confidence 5667778888899998876322211 11 12346788888887667776655556654 4456677899999888664
Q ss_pred ccccHHHHHHHHHHcCC-cEEEEEC--------------------CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 150 STIHLHRTLNQIKDLGA-KAGVVLN--------------------PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~-k~Glai~--------------------p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
..++..+.+..++.+. ++.+.+. .....+..+.+.+ .+|.|.+.++...-..+.+.
T Consensus 104 -~~~p~~~~~i~~~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~- 181 (243)
T cd04731 104 -VENPELIREIAKRFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKKGYD- 181 (243)
T ss_pred -hhChHHHHHHHHHcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCC-
Confidence 3445445555555553 3444432 1122333444433 48999998776532233332
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-CCcEEEEcccccCCC-CHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-GANALVAGSAVFGAK-DYAEAIKGI 270 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-GAD~~VvGSaIf~a~-dp~~~~~~l 270 (281)
++-++++++.. +.++.+-|||+ ++.+..+.+. |+|.+++|++++... +..+..+.+
T Consensus 182 --~~~i~~i~~~~-----~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~~~~~~~~~ 240 (243)
T cd04731 182 --LELIRAVSSAV-----NIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYTIAELKEYL 240 (243)
T ss_pred --HHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCCHHHHHHHH
Confidence 44445554432 47899999997 8999999987 999999999998654 444433333
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.9e-07 Score=81.25 Aligned_cols=178 Identities=19% Similarity=0.215 Sum_probs=115.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+++.|++++|+==.||.+-. -.-..+.++++++.++.|+.+.=-+.+.+ .++.+.++||+.|.+....
T Consensus 31 ~~~~~a~~~~~~g~~~i~v~dld~~~~g-~~~~~~~i~~i~~~~~~pv~~~GGI~~~e-d~~~~~~~Ga~~vilg~~~-- 106 (233)
T PRK00748 31 DPVAQAKAWEDQGAKWLHLVDLDGAKAG-KPVNLELIEAIVKAVDIPVQVGGGIRSLE-TVEALLDAGVSRVIIGTAA-- 106 (233)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccC-CcccHHHHHHHHHHCCCCEEEcCCcCCHH-HHHHHHHcCCCEEEECchH--
Confidence 5566677888899999998544664321 12346788888777777776655555544 4567888999999888764
Q ss_pred cccHHHHHHHHHHcCCcEEEEECC---------------CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNP---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p---------------~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
..++..+.+.++..+-++.+.+.. .++.+..+.+.+ .++.|+++.+...-..+.. .++.++
T Consensus 107 l~~~~~l~ei~~~~~~~i~vsid~k~~~v~~~g~~~~~~~~~~e~~~~~~~~g~~~ii~~~~~~~g~~~G~---d~~~i~ 183 (233)
T PRK00748 107 VKNPELVKEACKKFPGKIVVGLDARDGKVATDGWLETSGVTAEDLAKRFEDAGVKAIIYTDISRDGTLSGP---NVEATR 183 (233)
T ss_pred HhCHHHHHHHHHHhCCCceeeeeccCCEEEEccCeecCCCCHHHHHHHHHhcCCCEEEEeeecCcCCcCCC---CHHHHH
Confidence 233333344444443333333321 123455555544 3898988877653222222 345566
Q ss_pred HHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGA 260 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a 260 (281)
++++.. ++++.+-|||+ ++.+.++.+.| +|.+++|+++...
T Consensus 184 ~l~~~~-----~ipvia~GGi~~~~di~~~~~~g~~~gv~vg~a~~~~ 226 (233)
T PRK00748 184 ELAAAV-----PIPVIASGGVSSLDDIKALKGLGAVEGVIVGRALYEG 226 (233)
T ss_pred HHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCccEEEEEHHHHcC
Confidence 666543 36888999999 78999999998 9999999998754
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.8e-07 Score=81.14 Aligned_cols=175 Identities=13% Similarity=0.106 Sum_probs=114.7
Q ss_pred HHHHHHHHH-cCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 73 GEQVKAVEL-AGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 73 ~~~l~~l~~-~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
.+..+.+.+ .|+|++|+==.|+.. ....-..++|++|.+.++.|+.+.==+.+.+ -++.++++||+.+.+..++ .
T Consensus 34 ~~~a~~~~~~~Ga~~l~ivDLd~a~-~~~~~n~~~I~~i~~~~~~pi~vGGGIrs~e-~v~~~l~~Ga~kvvigt~a--~ 109 (234)
T PRK13587 34 EESIAYYSQFECVNRIHIVDLIGAK-AQHAREFDYIKSLRRLTTKDIEVGGGIRTKS-QIMDYFAAGINYCIVGTKG--I 109 (234)
T ss_pred HHHHHHHHhccCCCEEEEEECcccc-cCCcchHHHHHHHHhhcCCeEEEcCCcCCHH-HHHHHHHCCCCEEEECchH--h
Confidence 345566666 689999984334421 1223346788888776666655544444433 5677889999999999885 4
Q ss_pred ccHHHHHHHHHHcCCcEEEEECC--C----------C---CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNP--A----------T---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p--~----------t---~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.+++-+-+..+++|-++.+++.. + + +.+.++++.+. +..++++.+...-..+.+.-+.+ ++
T Consensus 110 ~~~~~l~~~~~~fg~~ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~G~~~~li---~~ 186 (234)
T PRK13587 110 QDTDWLKEMAHTFPGRIYLSVDAYGEDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELT---GQ 186 (234)
T ss_pred cCHHHHHHHHHHcCCCEEEEEEeeCCEEEecCCcccCCCCHHHHHHHHHHcCCCEEEEecccCcCCCCccCHHHH---HH
Confidence 55655556666777666555432 1 1 14445554443 67888888865333333444444 44
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+++.. +.++.+-|||+ ++.+..+.+.|++.+|+|+++++
T Consensus 187 l~~~~-----~ipvi~~GGi~s~edi~~l~~~G~~~vivG~a~~~ 226 (234)
T PRK13587 187 LVKAT-----TIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQ 226 (234)
T ss_pred HHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEEhHHHHh
Confidence 44332 36899999999 78999999999999999999986
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.4e-06 Score=79.27 Aligned_cols=189 Identities=18% Similarity=0.154 Sum_probs=119.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+.++.+.+.|++++|+==.|+.. -.-....+.++++++.++.|+.+-==+.+++ .++.+.++||+.+.+.-+.
T Consensus 30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~-d~~~~~~~Ga~~vivgt~~- 106 (254)
T TIGR00735 30 GDPVELAQRYDEEGADELVFLDITASS-EGRTTMIDVVERTAETVFIPLTVGGGIKSIE-DVDKLLRAGADKVSINTAA- 106 (254)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccc-ccChhhHHHHHHHHHhcCCCEEEECCCCCHH-HHHHHHHcCCCEEEEChhH-
Confidence 366777888888999999983233210 0123345678888777667766654455544 4566777999999998774
Q ss_pred ccccHHHHHHHHHHcC-CcEEEEEC--CC---------------------CCHHHHHHhhc-cCCEEEEEeecCCCCCCc
Q 023494 150 STIHLHRTLNQIKDLG-AKAGVVLN--PA---------------------TSLSAIECVLD-VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G-~k~Glai~--p~---------------------t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~ 204 (281)
..++.-+-+..+.+| -++.+++. .. ..++..+.+.+ .+|.|++.+++..-..+.
T Consensus 107 -~~~p~~~~~~~~~~~~~~iv~slD~~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~~iivt~i~~~g~~~g 185 (254)
T TIGR00735 107 -VKNPELIYELADRFGSQCIVVAIDAKRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAGEILLTSMDKDGTKSG 185 (254)
T ss_pred -hhChHHHHHHHHHcCCCCEEEEEEeccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCCEEEEeCcCcccCCCC
Confidence 345655555556666 34555443 11 12233344433 379999877655222233
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCC-CCHHHHHHHH
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGA-KDYAEAIKGI 270 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a-~dp~~~~~~l 270 (281)
+. ++-++++++.. +.++.+-|||+ ++.+.++.+.| +|.+++|++++.. -+..+..+.+
T Consensus 186 ~~---~~~~~~i~~~~-----~ipvia~GGi~s~~di~~~~~~g~~dgv~~g~a~~~~~~~~~~~~~~~ 246 (254)
T TIGR00735 186 YD---LELTKAVSEAV-----KIPVIASGGAGKPEHFYEAFTKGKADAALAASVFHYREITIGEVKEYL 246 (254)
T ss_pred CC---HHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCcceeeEhHHHhCCCCCHHHHHHHH
Confidence 32 33445555442 46899999999 78999999988 9999999999854 3444433333
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.3e-07 Score=80.96 Aligned_cols=183 Identities=12% Similarity=0.088 Sum_probs=116.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++...+.|.+++|++..|+.. .-.-..+++++|.+.+..|+.+.==+.+.+ -++.++++||+.|.+.-++
T Consensus 32 ~p~~~a~~~~~~g~~~lhivDLd~a~--g~~~n~~~i~~i~~~~~~~v~vgGGIrs~e-~~~~~l~~Ga~~vvigT~a-- 106 (243)
T TIGR01919 32 SLESAAKWWEQGGAEWIHLVDLDAAF--GGGNNEMMLEEVVKLLVVVEELSGGRRDDS-SLRAALTGGRARVNGGTAA-- 106 (243)
T ss_pred CHHHHHHHHHhCCCeEEEEEECCCCC--CCcchHHHHHHHHHHCCCCEEEcCCCCCHH-HHHHHHHcCCCEEEECchh--
Confidence 33456677788899999999999843 333456788888776555555443344433 5667889999999998775
Q ss_pred cccHHHHHHHHHHcCCcEEEE--EC-CC------------CC---HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVV--LN-PA------------TS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Gla--i~-p~------------t~---ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
..++.-+-+.++++|-++.++ .. .+ +. .+.++++.+. +..|+++.++---..+-+.-+.
T Consensus 107 ~~~p~~~~~~~~~~g~~ivvslD~k~~g~~~~v~~~Gw~~~~~~~~~~~~~~~~~g~~~ii~tdI~~dGt~~G~d~~l-- 184 (243)
T TIGR01919 107 LENPWWAAAVIRYGGDIVAVGLDVLEDGEWHTLGNRGWSDGGGDLEVLERLLDSGGCSRVVVTDSKKDGLSGGPNELL-- 184 (243)
T ss_pred hCCHHHHHHHHHHccccEEEEEEEecCCceEEEECCCeecCCCcHHHHHHHHHhCCCCEEEEEecCCcccCCCcCHHH--
Confidence 345555555566666554443 32 11 22 2333333332 6788888886422223343333
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH---HcCCcEEEEcccccCC-CCHHHH
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI---EAGANALVAGSAVFGA-KDYAEA 266 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~---~aGAD~~VvGSaIf~a-~dp~~~ 266 (281)
++++++.. +.++.+.||++ .+.+..+. +.|++.+++|++++.. =+.+++
T Consensus 185 -~~~l~~~~-----~~pviasGGv~s~eDl~~l~~l~~~Gv~gvivg~Al~~g~i~~~~~ 238 (243)
T TIGR01919 185 -LEVVAART-----DAIVAASGGSSLLDDLRAIKYLDEGGVSVAIGGKLLYARFFTLEAA 238 (243)
T ss_pred -HHHHHhhC-----CCCEEEECCcCCHHHHHHHHhhccCCeeEEEEhHHHHcCCCCHHHH
Confidence 44444442 36888999999 67888764 4599999999999864 355544
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=98.74 E-value=2.3e-06 Score=77.40 Aligned_cols=186 Identities=13% Similarity=0.152 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+-.+..+.+.+.|++++|+==.|+. ....-..+++++|.+.++.|+.+.==+.+.+ .++.++++||+.+.+..+.
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~--~g~~~n~~~i~~i~~~~~~pv~vgGGirs~e-dv~~~l~~Ga~kvviGs~~-- 107 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAA--FGRGSNRELLAEVVGKLDVKVELSGGIRDDE-SLEAALATGCARVNIGTAA-- 107 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecccc--CCCCccHHHHHHHHHHcCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchH--
Confidence 4445566777899999998333442 1222335788888776666665544444543 6778889999999998875
Q ss_pred cccHHHHHHHHHHcCCcEEE--EECC------------CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGV--VLNP------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Gl--ai~p------------~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
..+++-+.+.+++++-++.+ .+.. .++++.++.+.+ .++.++++.+..--..+.+ .++.+++
T Consensus 108 l~~p~l~~~i~~~~~~~i~vsld~~~~~v~~~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~~g~~~G~---d~~~i~~ 184 (241)
T PRK14024 108 LENPEWCARVIAEHGDRVAVGLDVRGHTLAARGWTRDGGDLWEVLERLDSAGCSRYVVTDVTKDGTLTGP---NLELLRE 184 (241)
T ss_pred hCCHHHHHHHHHHhhhhEEEEEEEeccEeccCCeeecCccHHHHHHHHHhcCCCEEEEEeecCCCCccCC---CHHHHHH
Confidence 35555555555666655544 3311 112344444433 3799999988652222222 3556666
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHH---cCCcEEEEcccccCC-CCHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE---AGANALVAGSAVFGA-KDYAEAIKG 269 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~---aGAD~~VvGSaIf~a-~dp~~~~~~ 269 (281)
+++.. ++++.+-|||+ .+.+..+.+ .|+|.+++|++++.. -+++++.+.
T Consensus 185 i~~~~-----~ipviasGGi~s~~D~~~l~~~~~~GvdgV~igra~~~g~~~~~~~~~~ 238 (241)
T PRK14024 185 VCART-----DAPVVASGGVSSLDDLRALAELVPLGVEGAIVGKALYAGAFTLPEALAV 238 (241)
T ss_pred HHhhC-----CCCEEEeCCCCCHHHHHHHhhhccCCccEEEEeHHHHcCCCCHHHHHHH
Confidence 66543 47899999999 788888753 599999999998754 456555443
|
|
| >TIGR01182 eda Entner-Doudoroff aldolase | Back alignment and domain information |
|---|
Probab=98.72 E-value=1.7e-06 Score=76.60 Aligned_cols=172 Identities=18% Similarity=0.157 Sum_probs=121.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..+..+..+.+.++|++.+++.. +..-..+.++++++. ++..+-+-- |.+++ -.+.+.++
T Consensus 9 ~liaVlr~~~~e~a~~~~~al~~~Gi~~iEit~-------~t~~a~~~i~~l~~~~~~~~vGAGT-Vl~~~-~a~~a~~a 79 (204)
T TIGR01182 9 KIVPVIRIDDVDDALPLAKALIEGGLRVLEVTL-------RTPVALDAIRLLRKEVPDALIGAGT-VLNPE-QLRQAVDA 79 (204)
T ss_pred CEEEEEecCCHHHHHHHHHHHHHcCCCEEEEeC-------CCccHHHHHHHHHHHCCCCEEEEEe-CCCHH-HHHHHHHc
Confidence 466777777888888888999999999999953 223356778888764 433343322 24544 46788999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC--CCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~--~GQ~f~~~~l~kI~~ 215 (281)
||+++.-+.- -.++++.++++|+-.---. -||-|....+-..+|.|=+ .|.- +| .+-|+.
T Consensus 80 GA~FivsP~~------~~~v~~~~~~~~i~~iPG~--~TptEi~~A~~~Ga~~vKl---FPA~~~GG-------~~yika 141 (204)
T TIGR01182 80 GAQFIVSPGL------TPELAKHAQDHGIPIIPGV--ATPSEIMLALELGITALKL---FPAEVSGG-------VKMLKA 141 (204)
T ss_pred CCCEEECCCC------CHHHHHHHHHcCCcEECCC--CCHHHHHHHHHCCCCEEEE---CCchhcCC-------HHHHHH
Confidence 9999854433 2368888998887543322 3566666666666888754 5632 23 233556
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.-++ +.++..-|||+++|+.+.+++|+..+.+||.||+.+
T Consensus 142 l~~plp----~i~~~ptGGV~~~N~~~~l~aGa~~vg~Gs~L~~~~ 183 (204)
T TIGR01182 142 LAGPFP----QVRFCPTGGINLANVRDYLAAPNVACGGGSWLVPKD 183 (204)
T ss_pred HhccCC----CCcEEecCCCCHHHHHHHHhCCCEEEEEChhhcCch
Confidence 666554 478889999999999999999999999999999753
|
2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.5e-06 Score=77.48 Aligned_cols=190 Identities=16% Similarity=0.110 Sum_probs=117.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.+++.|++++|+==.|..- ..-....+.++++++.++.|+.+.==+.+++ .++.+.+.|++.+.+..+.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~-~~~~~~~~~i~~i~~~~~ipv~~~GGi~s~~-~~~~~l~~Ga~~Viigt~~-- 106 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASS-EGRDTMLDVVERVAEQVFIPLTVGGGIRSVE-DARRLLRAGADKVSINSAA-- 106 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccc-ccCcchHHHHHHHHHhCCCCEEeeCCCCCHH-HHHHHHHcCCCEEEEChhH--
Confidence 45566677778899999983233210 1123456788888776666655433334443 4556677999999998764
Q ss_pred cccHHHHHHHHHHcC---CcEEEEECC------------------C-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 151 TIHLHRTLNQIKDLG---AKAGVVLNP------------------A-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G---~k~Glai~p------------------~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
..++..+-+..+.+| +.+.+.+.. + +..+.++.+.+ .++.+++.+++.....|.+.
T Consensus 107 l~~p~~~~ei~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~~ii~~~i~~~g~~~g~d- 185 (253)
T PRK02083 107 VANPELISEAADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGRKPTGLDAVEWAKEVEELGAGEILLTSMDRDGTKNGYD- 185 (253)
T ss_pred hhCcHHHHHHHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCceecCCCHHHHHHHHHHcCCCEEEEcCCcCCCCCCCcC-
Confidence 344544444455555 233343321 1 22344444443 37889887766422334443
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-CCcEEEEcccccC-CCCHHHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-GANALVAGSAVFG-AKDYAEAIKGIKT 272 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-GAD~~VvGSaIf~-a~dp~~~~~~l~~ 272 (281)
++.++++++.. ++++.+-|||+ .+.+.++.+. |+|.+++|+++.. .-++.+..+.+++
T Consensus 186 --~~~i~~~~~~~-----~ipvia~GGv~s~~d~~~~~~~~G~~gvivg~al~~~~~~~~~~~~~~~~ 246 (253)
T PRK02083 186 --LELTRAVSDAV-----NVPVIASGGAGNLEHFVEAFTEGGADAALAASIFHFGEITIGELKAYLAE 246 (253)
T ss_pred --HHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHhCCccEEeEhHHHHcCCCCHHHHHHHHHH
Confidence 45556655543 46899999999 7899888874 9999999999875 4566655555543
|
|
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.4e-06 Score=76.78 Aligned_cols=151 Identities=19% Similarity=0.282 Sum_probs=103.5
Q ss_pred HHHHHcCc---CCCCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc-----------ccccHHHHHHHHHHc-CC
Q 023494 105 LVVDALRP---VTDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS-----------STIHLHRTLNQIKDL-GA 166 (281)
Q Consensus 105 ~~I~~ir~---~t~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~-----------~~~~i~~~l~~ik~~-G~ 166 (281)
..++.+++ ..+.|+.+-++-.+++.|.+ .+.++|+|+|-+|.-+. ..+.+.++++++|+. ++
T Consensus 76 ~~~~~~~~~~~~~~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~ 155 (296)
T cd04740 76 AFLEELLPWLREFGTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDV 155 (296)
T ss_pred HHHHHHHHHhhcCCCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCC
Confidence 34445433 25689999999999987654 45678999999985431 112355788899987 77
Q ss_pred cEEEEECCCCC-HHHHHHhhc--cCCEEEEEee------c-----C-------CCCCCccchhHHHHHHHHHHHhhhcCC
Q 023494 167 KAGVVLNPATS-LSAIECVLD--VVDLVLIMSV------N-----P-------GFGGQSFIESQVKKISDLRRMCLEKGV 225 (281)
Q Consensus 167 k~Glai~p~t~-ie~~~~~l~--~vD~IlvmsV------~-----p-------G~~GQ~f~~~~l~kI~~lr~l~~~~~~ 225 (281)
.+.+=+.|+.+ ...+.+.+. .+|.|.+... + | |+.|....|..++.++++++..
T Consensus 156 Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~----- 230 (296)
T cd04740 156 PVIVKLTPNVTDIVEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAV----- 230 (296)
T ss_pred CEEEEeCCCchhHHHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhc-----
Confidence 88877777642 323233232 3787755311 1 1 2344444566677777777653
Q ss_pred CCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++|...|||+ .+++.+++++|||.+-+||+++..
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~GAd~V~igra~l~~ 266 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAGASAVQVGTANFVD 266 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEchhhhcC
Confidence 47899999995 899999999999999999998863
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.2e-05 Score=73.55 Aligned_cols=177 Identities=16% Similarity=0.129 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.+.|++++|+==.|+.. ..-.-..++++++.+.++.|+.+.==+.+++ -++.+.++|++.+.+..+.
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~-~~~~~n~~~i~~i~~~~~~pv~~gGGi~s~~-d~~~l~~~G~~~vvigs~~-- 106 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASK-RGSEPNYELIENLASECFMPLCYGGGIKTLE-QAKKIFSLGVEKVSINTAA-- 106 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCc-CCCcccHHHHHHHHHhCCCCEEECCCCCCHH-HHHHHHHCCCCEEEEChHH--
Confidence 66677888889999999984333321 1122346778888776666654433334433 3555678899999998764
Q ss_pred cccHHHHHHHHHHcCC-cEEEEEC--------------------CCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchh
Q 023494 151 TIHLHRTLNQIKDLGA-KAGVVLN--------------------PATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~Glai~--------------------p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
.+++..+.+.++++|. ++.+++. +..+.+.++.+.+. ++.++++.+...-..+.+
T Consensus 107 ~~~~~~~~~~~~~~~~~~i~vsiD~k~g~~~~~~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~~~i~~~G~~~G~--- 183 (258)
T PRK01033 107 LEDPDLITEAAERFGSQSVVVSIDVKKNLGGKFDVYTHNGTKKLKKDPLELAKEYEALGAGEILLNSIDRDGTMKGY--- 183 (258)
T ss_pred hcCHHHHHHHHHHhCCCcEEEEEEEecCCCCcEEEEEcCCeecCCCCHHHHHHHHHHcCCCEEEEEccCCCCCcCCC---
Confidence 3445444444555541 2333332 11233444444343 899999877542222223
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH-HcCCcEEEEcccccC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI-EAGANALVAGSAVFG 259 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~-~aGAD~~VvGSaIf~ 259 (281)
.++.++++++.. ++++.+-|||+ .+++.++. +.|+|.+++|+++.-
T Consensus 184 d~~~i~~~~~~~-----~ipvIasGGv~s~eD~~~l~~~~GvdgVivg~a~~~ 231 (258)
T PRK01033 184 DLELLKSFRNAL-----KIPLIALGGAGSLDDIVEAILNLGADAAAAGSLFVF 231 (258)
T ss_pred CHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHHCCCCEEEEcceeee
Confidence 355556655542 47899999999 78999988 799999999999743
|
|
| >PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4 | Back alignment and domain information |
|---|
Probab=98.63 E-value=1.1e-06 Score=77.31 Aligned_cols=173 Identities=20% Similarity=0.168 Sum_probs=117.1
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-.-|..+..+.++.|.++|++.+++= -+.....+.|+.+++. ++..+-+-- |.+++ -.+.+.++
T Consensus 9 ~iiaVir~~~~~~a~~~~~al~~gGi~~iEiT-------~~t~~a~~~I~~l~~~~p~~~vGAGT-V~~~e-~a~~a~~a 79 (196)
T PF01081_consen 9 KIIAVIRGDDPEDAVPIAEALIEGGIRAIEIT-------LRTPNALEAIEALRKEFPDLLVGAGT-VLTAE-QAEAAIAA 79 (196)
T ss_dssp SEEEEETTSSGGGHHHHHHHHHHTT--EEEEE-------TTSTTHHHHHHHHHHHHTTSEEEEES---SHH-HHHHHHHH
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-------cCCccHHHHHHHHHHHCCCCeeEEEe-ccCHH-HHHHHHHc
Confidence 47788888888899999999999999999882 2233456788888764 655555532 34444 57788999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC-CCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF-GGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~l 216 (281)
||+++.-+.. -.++++.++++|+-..--.. ||-|....+--.+|+|=+ .|.- -| ..+-|+.+
T Consensus 80 GA~FivSP~~------~~~v~~~~~~~~i~~iPG~~--TptEi~~A~~~G~~~vK~---FPA~~~G------G~~~ik~l 142 (196)
T PF01081_consen 80 GAQFIVSPGF------DPEVIEYAREYGIPYIPGVM--TPTEIMQALEAGADIVKL---FPAGALG------GPSYIKAL 142 (196)
T ss_dssp T-SEEEESS--------HHHHHHHHHHTSEEEEEES--SHHHHHHHHHTT-SEEEE---TTTTTTT------HHHHHHHH
T ss_pred CCCEEECCCC------CHHHHHHHHHcCCcccCCcC--CHHHHHHHHHCCCCEEEE---ecchhcC------cHHHHHHH
Confidence 9999877654 24689999999987655442 455555555456777744 5642 12 13335555
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+.-++ ++++...|||+++|+.+.+++|+..+++||.+|+.+
T Consensus 143 ~~p~p----~~~~~ptGGV~~~N~~~~l~ag~~~vg~Gs~L~~~~ 183 (196)
T PF01081_consen 143 RGPFP----DLPFMPTGGVNPDNLAEYLKAGAVAVGGGSWLFPKD 183 (196)
T ss_dssp HTTTT----T-EEEEBSS--TTTHHHHHTSTTBSEEEESGGGSHH
T ss_pred hccCC----CCeEEEcCCCCHHHHHHHHhCCCEEEEECchhcCHH
Confidence 55544 478889999999999999999999999999999754
|
1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A .... |
| >TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II | Back alignment and domain information |
|---|
Probab=98.62 E-value=1e-06 Score=82.54 Aligned_cols=139 Identities=17% Similarity=0.256 Sum_probs=102.1
Q ss_pred HHHHHcCcCCCCCeeEEEEecChh--hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~--~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~ 182 (281)
+.|+++|+.++.||-+.+++..|. ..++.+.+.|++.|.++.-. +.+.++.+|+.|+++...+ +.++..+
T Consensus 52 ~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~~g~-----p~~~i~~lk~~g~~v~~~v---~s~~~a~ 123 (307)
T TIGR03151 52 KEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTGAGN-----PGKYIPRLKENGVKVIPVV---ASVALAK 123 (307)
T ss_pred HHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEcCCC-----cHHHHHHHHHcCCEEEEEc---CCHHHHH
Confidence 346777777889999999886654 45677889999999997642 3468999999998876544 3565555
Q ss_pred Hhhc-cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 183 CVLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 183 ~~l~-~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
...+ .+|.|.+.+.+.|- .|+ ...+.-+.++++.. +++|.+.|||+ .+.+..+...|||.+.+||.+..
T Consensus 124 ~a~~~GaD~Ivv~g~eagGh~g~---~~~~~ll~~v~~~~-----~iPviaaGGI~~~~~~~~al~~GA~gV~iGt~f~~ 195 (307)
T TIGR03151 124 RMEKAGADAVIAEGMESGGHIGE---LTTMALVPQVVDAV-----SIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFLC 195 (307)
T ss_pred HHHHcCCCEEEEECcccCCCCCC---CcHHHHHHHHHHHh-----CCCEEEECCCCCHHHHHHHHHcCCCEeecchHHhc
Confidence 5544 49999887766542 232 22455666666543 47899999998 66799999999999999988654
|
This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase. |
| >PRK06806 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-06 Score=79.25 Aligned_cols=194 Identities=17% Similarity=0.242 Sum_probs=128.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
|+..+.-.++.+++.+...| +.+-.++ |.+.--++. .++...+....|+-+||==..-...++.++++|++.|-+=
T Consensus 27 n~e~~~avi~aAe~~~~Pvi-i~~~~~~~~~~~~~~~~~-~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~tsVm~d 104 (281)
T PRK06806 27 NMEMVMGAIKAAEELNSPII-LQIAEVRLNHSPLHLIGP-LMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTSVMFD 104 (281)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEcCcchhccCChHHHHH-HHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEc
Confidence 44445566677788777765 5544442 222111222 2333333356899999855443457888999999888776
Q ss_pred cccccc----ccHHHHHHHHHHcCCcEEEE---EC-----------CCCCHHHHHHhh--ccCCEEEE--EeecCCCCCC
Q 023494 146 CEQSST----IHLHRTLNQIKDLGAKAGVV---LN-----------PATSLSAIECVL--DVVDLVLI--MSVNPGFGGQ 203 (281)
Q Consensus 146 ~Ea~~~----~~i~~~l~~ik~~G~k~Gla---i~-----------p~t~ie~~~~~l--~~vD~Ilv--msV~pG~~GQ 203 (281)
.-..+. ....++.+.++++|..+... +. ..|..+...++. ..+||+.+ .++++.+.+
T Consensus 105 ~s~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~~~tg~DyLAvaiG~~hg~~~~- 183 (281)
T PRK06806 105 GSHLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFAEETDVDALAVAIGNAHGMYNG- 183 (281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHHHhhCCCEEEEccCCCCCCCCC-
Confidence 432211 12446677788888766532 21 025666677765 36999998 888875532
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
-.+-.+++|+++++.. ++++..-| ||+.+++++++++|++.+-++|+|+. ++.++++++.+
T Consensus 184 -~~~l~~~~L~~i~~~~-----~iPlV~hG~SGI~~e~~~~~i~~G~~kinv~T~i~~--a~~~a~~~~~~ 246 (281)
T PRK06806 184 -DPNLRFDRLQEINDVV-----HIPLVLHGGSGISPEDFKKCIQHGIRKINVATATFN--SVITAVNNLVL 246 (281)
T ss_pred -CCccCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHcCCcEEEEhHHHHH--HHHHHHHHHHH
Confidence 2234577788887764 47899999 99999999999999999999999997 57777777654
|
|
| >PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=5e-06 Score=73.48 Aligned_cols=171 Identities=17% Similarity=0.139 Sum_probs=120.6
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..+..+..+.+.++|++.++|= -+..-..+.|+.+++. ++..+-+.- |.|++ -.+.+.++
T Consensus 5 ~vv~Vir~~~~~~a~~ia~al~~gGi~~iEit-------~~tp~a~~~I~~l~~~~~~~~vGAGT-Vl~~e-~a~~ai~a 75 (201)
T PRK06015 5 PVIPVLLIDDVEHAVPLARALAAGGLPAIEIT-------LRTPAALDAIRAVAAEVEEAIVGAGT-ILNAK-QFEDAAKA 75 (201)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-------CCCccHHHHHHHHHHHCCCCEEeeEe-CcCHH-HHHHHHHc
Confidence 46677777788888888899999999999882 2233456778887653 444444432 34554 56789999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC-C-CCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG-F-GGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG-~-~GQ~f~~~~l~kI~~ 215 (281)
||+++.-+.- -.++++.++++|+-.---. -||-|....+-...|.|=+ .|+ . +|- +-|+.
T Consensus 76 GA~FivSP~~------~~~vi~~a~~~~i~~iPG~--~TptEi~~A~~~Ga~~vK~---FPa~~~GG~-------~yika 137 (201)
T PRK06015 76 GSRFIVSPGT------TQELLAAANDSDVPLLPGA--ATPSEVMALREEGYTVLKF---FPAEQAGGA-------AFLKA 137 (201)
T ss_pred CCCEEECCCC------CHHHHHHHHHcCCCEeCCC--CCHHHHHHHHHCCCCEEEE---CCchhhCCH-------HHHHH
Confidence 9998876654 2467888898886543322 2566666666556887754 564 2 232 33566
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.-++ +.++...|||+++|+.+++++|+...+.||.+++.
T Consensus 138 l~~plp----~~~l~ptGGV~~~n~~~~l~ag~~~~~ggs~l~~~ 178 (201)
T PRK06015 138 LSSPLA----GTFFCPTGGISLKNARDYLSLPNVVCVGGSWVAPK 178 (201)
T ss_pred HHhhCC----CCcEEecCCCCHHHHHHHHhCCCeEEEEchhhCCc
Confidence 666665 47888999999999999999999999999999964
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=98.61 E-value=3.4e-06 Score=75.45 Aligned_cols=175 Identities=17% Similarity=0.139 Sum_probs=111.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+++.|++++|+==.|+... .-....+.++.+++.++.|+.+-=-+.+.+ .++.+.+.|++.+.+..+.
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~-~~~~n~~~~~~i~~~~~~pv~~~ggi~~~~-d~~~~~~~G~~~vilg~~~-- 106 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKR-GREPLFELISNLAEECFMPLTVGGGIRSLE-DAKKLLSLGADKVSINTAA-- 106 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCccc-CCCCCHHHHHHHHHhCCCCEEEECCCCCHH-HHHHHHHcCCCEEEEChhH--
Confidence 566778888889999988732333211 123456778888877777766544444433 3445778899999988764
Q ss_pred cccHHHHHHHHHHcCCc-E--EEEECCC-------------------CCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 151 TIHLHRTLNQIKDLGAK-A--GVVLNPA-------------------TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k-~--Glai~p~-------------------t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
..++..+.+..+++|.+ + .+.+... .+++..+.+.+ .+|.|.++++.+.-..+.+
T Consensus 107 l~~~~~~~~~~~~~~~~~i~vsld~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~G~d~i~i~~i~~~g~~~g~-- 184 (232)
T TIGR03572 107 LENPDLIEEAARRFGSQCVVVSIDVKKELDGSDYKVYSDNGRRATGRDPVEWAREAEQLGAGEILLNSIDRDGTMKGY-- 184 (232)
T ss_pred hcCHHHHHHHHHHcCCceEEEEEEeccCCCCCcEEEEECCCcccCCCCHHHHHHHHHHcCCCEEEEeCCCccCCcCCC--
Confidence 34555455555555543 2 3333221 12344444433 3899999887653222222
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHH-HHHcCCcEEEEcccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYK-VIEAGANALVAGSAV 257 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~-~~~aGAD~~VvGSaI 257 (281)
-++-++++++.. +.++.+-|||+ .+.+.. +.+.|||.+++|+++
T Consensus 185 -~~~~~~~i~~~~-----~ipvia~GGi~s~~di~~~l~~~gadgV~vg~a~ 230 (232)
T TIGR03572 185 -DLELIKTVSDAV-----SIPVIALGGAGSLDDLVEVALEAGASAVAAASLF 230 (232)
T ss_pred -CHHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHHcCCCEEEEehhh
Confidence 244455555543 46899999999 788888 888999999999986
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.9e-07 Score=82.15 Aligned_cols=141 Identities=14% Similarity=0.194 Sum_probs=103.2
Q ss_pred CHHHHHHcCcC-CCCCeeEEEEecChhhHHHH-HHHcCCCEEEEcccccc-------------cccHHHHHHHHHHc--C
Q 023494 103 GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-FIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDL--G 165 (281)
Q Consensus 103 G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~-~~~aGAd~Itvh~Ea~~-------------~~~i~~~l~~ik~~--G 165 (281)
--++++.+|+. ++..+.+.-|+....+++++ +..+|....|-..-+.. .+.+.+.++.+|+. +
T Consensus 109 T~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~Av~~GGg~~HR~gLsd~ilikdnHi~~~g~~~~i~~av~~~r~~~~~ 188 (277)
T TIGR01334 109 THKMVTLAKKISPMAVVACTRKAIPLTRPLAVKAVLAAGGVIHRIGLSETLLVFANHRTFLNDNFDWGGAIGRLKQTAPE 188 (277)
T ss_pred HHHHHHHHHhcCCCCEEEecCCCCCChhHHHHHHHHhCCCcCeecCCchhheehHHHHHHhCCcccHHHHHHHHHHhCCC
Confidence 34567777764 77888888888888887664 57889888887754311 02588899999987 5
Q ss_pred CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHH
Q 023494 166 AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 244 (281)
Q Consensus 166 ~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~ 244 (281)
.++.+-+. ++++.+++++. +|.|++- .|.|+.+ +++.+++++.+.++.+++.||||++|+.++.
T Consensus 189 ~kIeVEv~---tleea~ea~~~GaDiI~lD---------n~~~e~l---~~~v~~l~~~~~~~~leasGGI~~~ni~~ya 253 (277)
T TIGR01334 189 RKITVEAD---TIEQALTVLQASPDILQLD---------KFTPQQL---HHLHERLKFFDHIPTLAAAGGINPENIADYI 253 (277)
T ss_pred CCEEEECC---CHHHHHHHHHcCcCEEEEC---------CCCHHHH---HHHHHHHhccCCCEEEEEECCCCHHHHHHHH
Confidence 67666664 77778887774 9999862 3555544 3344444334456889999999999999999
Q ss_pred HcCCcEEEEccccc
Q 023494 245 EAGANALVAGSAVF 258 (281)
Q Consensus 245 ~aGAD~~VvGSaIf 258 (281)
+.|+|++++|+--+
T Consensus 254 ~~GvD~is~gal~~ 267 (277)
T TIGR01334 254 EAGIDLFITSAPYY 267 (277)
T ss_pred hcCCCEEEeCccee
Confidence 99999999997533
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.60 E-value=1e-05 Score=73.03 Aligned_cols=186 Identities=18% Similarity=0.231 Sum_probs=128.2
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
-.+..+...+.|+.|+|+==.||-|.+ -.-..+.+++|.+.++.|+.+===+.+ .+.++.+.++|++.|++.--+ .
T Consensus 33 P~~~a~~~~~~Ga~~lHlVDLdgA~~g-~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~~G~~rViiGt~a--v 108 (241)
T COG0106 33 PLEVAKKWSDQGAEWLHLVDLDGAKAG-GPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLDAGVARVIIGTAA--V 108 (241)
T ss_pred HHHHHHHHHHcCCcEEEEeeccccccC-CcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHHCCCCEEEEecce--e
Confidence 345556777789999999777886643 334567788887766556554322333 457888999999999999875 5
Q ss_pred ccHHHHHHHHHHcCCcEEEEECCC---------------CCHHHHHHhhcc-CCEEEEEeecC-CC-CCCccchhHHHHH
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNPA---------------TSLSAIECVLDV-VDLVLIMSVNP-GF-GGQSFIESQVKKI 213 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p~---------------t~ie~~~~~l~~-vD~IlvmsV~p-G~-~GQ~f~~~~l~kI 213 (281)
.++..+.+.++++|-++.+++... ++.+..+.+.+. +..+++-.+.- |. .| .+.. -.
T Consensus 109 ~~p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~~ii~TdI~~DGtl~G--~n~~---l~ 183 (241)
T COG0106 109 KNPDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLAHILYTDISRDGTLSG--PNVD---LV 183 (241)
T ss_pred cCHHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCCeEEEEecccccccCC--CCHH---HH
Confidence 788899999999998877765422 233445555443 55666544432 22 23 2223 33
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-CCcEEEEcccccCC-CCHHHHHHHHH
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-GANALVAGSAVFGA-KDYAEAIKGIK 271 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-GAD~~VvGSaIf~a-~dp~~~~~~l~ 271 (281)
+++.+.. ++++...|||+ .+.++.+.+. |+..+|+|+|++.. =++.++.+-++
T Consensus 184 ~~l~~~~-----~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~g~~~l~ea~~~~~ 239 (241)
T COG0106 184 KELAEAV-----DIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYEGKFTLEEALACVR 239 (241)
T ss_pred HHHHHHh-----CcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhcCCCCHHHHHHHHh
Confidence 4444443 36888999999 8899999999 89999999999864 46777766554
|
|
| >cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.57 E-value=2.4e-07 Score=85.26 Aligned_cols=94 Identities=13% Similarity=0.241 Sum_probs=65.6
Q ss_pred HHHHHHHHHHcCC-cEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 154 LHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 154 i~~~l~~ik~~G~-k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+...++.+|+... ...+.+.++|..+..+.+...+|||++..+. |+ .++++.++++.. .+++|++.
T Consensus 167 ~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~~gaD~I~ld~~~---------~e---~l~~~v~~i~~~-~~i~i~as 233 (269)
T cd01568 167 ITEAVKRARAAAPFEKKIEVEVETLEEAEEALEAGADIIMLDNMS---------PE---ELKEAVKLLKGL-PRVLLEAS 233 (269)
T ss_pred HHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHHcCCCEEEECCCC---------HH---HHHHHHHHhccC-CCeEEEEE
Confidence 5567888888643 3445555566666555555679999885433 33 344444444332 35789999
Q ss_pred cCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 233 GGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 233 GGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
||||++|+.++.++|||++++|+..+..
T Consensus 234 GGIt~~ni~~~a~~Gad~Isvgal~~s~ 261 (269)
T cd01568 234 GGITLENIRAYAETGVDVISTGALTHSA 261 (269)
T ss_pred CCCCHHHHHHHHHcCCCEEEEcHHHcCC
Confidence 9999999999999999999997666654
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism | Back alignment and domain information |
|---|
Probab=98.55 E-value=9.5e-07 Score=79.82 Aligned_cols=189 Identities=19% Similarity=0.179 Sum_probs=120.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-C
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA-G 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a-G 138 (281)
-+.+.+...+.+...|++.+-+=+-=-.... .-+..+++.|+. -.++++-+..+ +..++..++ |
T Consensus 18 ky~s~~~~~~ai~aSg~~ivTva~rR~~~~~--~~~~~~~~~i~~-----~~~~~lpNTaG~~ta~eAv~~a~lare~~~ 90 (248)
T cd04728 18 KYPSPAIMKEAIEASGAEIVTVALRRVNIGD--PGGESFLDLLDK-----SGYTLLPNTAGCRTAEEAVRTARLAREALG 90 (248)
T ss_pred CCCCHHHHHHHHHHhCCCEEEEEEEecccCC--CCcchHHhhccc-----cCCEECCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 3446666667777888888766432211101 123344555542 13455655443 233444555 5
Q ss_pred CCEEEEccccc---ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHH
Q 023494 139 ADIVSVHCEQS---STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV 210 (281)
Q Consensus 139 Ad~Itvh~Ea~---~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l 210 (281)
-|||-+-.... -.+++.++++++++. |..+--..++ +....+.+.+ .++.|.-+....| +|+.. .|+
T Consensus 91 ~~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~d--d~~~ar~l~~~G~~~vmPlg~pIG-sg~Gi~~~~-- 165 (248)
T cd04728 91 TDWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTD--DPVLAKRLEDAGCAAVMPLGSPIG-SGQGLLNPY-- 165 (248)
T ss_pred CCeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CCCCCCCHH--
Confidence 68887654321 135788999999988 8887756654 3444555544 4788843334446 34443 344
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.|+.+++. .++++.+||||+ ++.+.++.+.|||.+++||+|.+++||...++.|+..+
T Consensus 166 -~I~~I~e~-----~~vpVI~egGI~tpeda~~AmelGAdgVlV~SAIt~a~dP~~ma~af~~Av 224 (248)
T cd04728 166 -NLRIIIER-----ADVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAKAKDPVAMARAFKLAV 224 (248)
T ss_pred -HHHHHHHh-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEChHhcCCCCHHHHHHHHHHHH
Confidence 44444443 246899999999 99999999999999999999999999999999988754
|
ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH). |
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.55 E-value=3e-06 Score=78.07 Aligned_cols=144 Identities=17% Similarity=0.171 Sum_probs=100.5
Q ss_pred CCCCeeEEEEecChhhH---HHHHHHcCCCEEEEcccccc----------cccHHHHHHHHHHc-CCcEEEEECCCCCHH
Q 023494 114 TDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVVLNPATSLS 179 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~---i~~~~~aGAd~Itvh~Ea~~----------~~~i~~~l~~ik~~-G~k~Glai~p~t~ie 179 (281)
++.|+.+-++-.+++.| ++.+.++|+|.|-++.-+.. .+.+.++++++|+. ++-+.+=+.+..+.+
T Consensus 97 ~~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~~ 176 (289)
T cd02810 97 PGQPLIASVGGSSKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYFDLE 176 (289)
T ss_pred CCCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCCCHH
Confidence 57899999988888766 44567789999999865310 12356778888876 667777777776643
Q ss_pred HHHHhh----c-cCCEEEEEeecC------------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 180 AIECVL----D-VVDLVLIMSVNP------------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 180 ~~~~~l----~-~vD~IlvmsV~p------------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
+..+++ + .+|+|.+..... |..|....+..++.++++++.++ .+++|...|||+
T Consensus 177 ~~~~~a~~l~~~Gad~i~~~~~~~~~~~~~~~~~~~~~~~~~g~sg~~~~~~~~~~v~~i~~~~~---~~ipiia~GGI~ 253 (289)
T cd02810 177 DIVELAKAAERAGADGLTAINTISGRVVDLKTVGPGPKRGTGGLSGAPIRPLALRWVARLAARLQ---LDIPIIGVGGID 253 (289)
T ss_pred HHHHHHHHHHHcCCCEEEEEcccCccceecccCccccCCCCCccCcHHHHHHHHHHHHHHHHhcC---CCCCEEEECCCC
Confidence 333332 2 279987643211 11222233456777777777653 147899999998
Q ss_pred -hhcHHHHHHcCCcEEEEcccccCC
Q 023494 237 -PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+++.+++++|||.+-+||+++..
T Consensus 254 ~~~da~~~l~~GAd~V~vg~a~~~~ 278 (289)
T cd02810 254 SGEDVLEMLMAGASAVQVATALMWD 278 (289)
T ss_pred CHHHHHHHHHcCccHheEcHHHHhc
Confidence 899999999999999999999974
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >PRK00208 thiG thiazole synthase; Reviewed | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.1e-06 Score=79.59 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=121.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-C
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA-G 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a-G 138 (281)
-+.+.+...+.++..|++.+-+-+---.. -.-+..+.+.|+. ..+|++-+..+ +..++..++ |
T Consensus 19 ky~s~~~~~~ai~asg~~ivTvalrR~~~---~~~~~~~~~~i~~-----~~~~~lpNTaG~~ta~eAv~~a~lare~~~ 90 (250)
T PRK00208 19 KYPSPQVMQEAIEASGAEIVTVALRRVNL---GQGGDNLLDLLPP-----LGVTLLPNTAGCRTAEEAVRTARLAREALG 90 (250)
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEeecC---CCCcchHHhhccc-----cCCEECCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 34466666677778888887664422110 0113455555542 13455555443 233444554 5
Q ss_pred CCEEEEccccc---ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHH
Q 023494 139 ADIVSVHCEQS---STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV 210 (281)
Q Consensus 139 Ad~Itvh~Ea~---~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l 210 (281)
-++|-+-.-.. ..+++.++++++++. |..+--..++ +....+.+.+ .+|+|.-+....| +|+.. .|+.
T Consensus 91 ~~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~--d~~~ak~l~~~G~~~vmPlg~pIG-sg~gi~~~~~- 166 (250)
T PRK00208 91 TNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTD--DPVLAKRLEEAGCAAVMPLGAPIG-SGLGLLNPYN- 166 (250)
T ss_pred CCeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHcCCCEeCCCCcCCC-CCCCCCCHHH-
Confidence 68887653321 245788999999988 8877755543 4444555544 4788833334446 34443 3444
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
|+.+++.. ++++.+||||+ ++.+.++.+.|+|.+++||+|++++||...+++|+..+
T Consensus 167 --i~~i~e~~-----~vpVIveaGI~tpeda~~AmelGAdgVlV~SAItka~dP~~ma~af~~Av 224 (250)
T PRK00208 167 --LRIIIEQA-----DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIAVAGDPVAMARAFKLAV 224 (250)
T ss_pred --HHHHHHhc-----CCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhCCCCHHHHHHHHHHHH
Confidence 45555432 46899999999 99999999999999999999999999999999988754
|
|
| >PRK13802 bifunctional indole-3-glycerol phosphate synthase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=98.53 E-value=6.1e-06 Score=84.88 Aligned_cols=198 Identities=21% Similarity=0.212 Sum_probs=141.4
Q ss_pred EeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 60 VSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 60 i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
-|||-=.. +..+..+..+..+++|++.|-| .-|..| |.=..+.++.+|+.+++|+...=.+-||.. +.....+|
T Consensus 59 aSPs~G~i~~~~d~~~~a~~y~~~GA~aiSV-lTe~~~---F~Gs~~~l~~vr~~v~~PvLrKDFIid~~Q-I~ea~~~G 133 (695)
T PRK13802 59 ASPSKGHLSDIPDPAALAREYEQGGASAISV-LTEGRR---FLGSLDDFDKVRAAVHIPVLRKDFIVTDYQ-IWEARAHG 133 (695)
T ss_pred CCCCCCcCCCCCCHHHHHHHHHHcCCcEEEE-ecCcCc---CCCCHHHHHHHHHhCCCCEEeccccCCHHH-HHHHHHcC
Confidence 36663222 2237777788899999998765 344422 334667788888888889887666777653 55678899
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
||.|.+.....+.+++.++++.+++.|+.+-+-++.. ++++..++ .+++|.+=..+. ..|. -.++.-.++.
T Consensus 134 ADavLLI~~~L~~~~l~~l~~~a~~lGme~LvEvh~~---~el~~a~~~ga~iiGINnRdL----~tf~-vd~~~t~~L~ 205 (695)
T PRK13802 134 ADLVLLIVAALDDAQLKHLLDLAHELGMTVLVETHTR---EEIERAIAAGAKVIGINARNL----KDLK-VDVNKYNELA 205 (695)
T ss_pred CCEeehhHhhcCHHHHHHHHHHHHHcCCeEEEEeCCH---HHHHHHHhCCCCEEEEeCCCC----ccce-eCHHHHHHHH
Confidence 9999999886544579999999999999999999743 33333333 577775422221 1121 1244556666
Q ss_pred HHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 218 RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
.++++ +..+..-+||+ ++++..+.++|+|.|.+|++|.+++||.+.+++|...
T Consensus 206 ~~ip~---~~~~VsESGI~~~~d~~~l~~~G~davLIGeslm~~~dp~~~~~~l~~~ 259 (695)
T PRK13802 206 ADLPD---DVIKVAESGVFGAVEVEDYARAGADAVLVGEGVATADDHELAVERLVKA 259 (695)
T ss_pred hhCCC---CcEEEEcCCCCCHHHHHHHHHCCCCEEEECHHhhCCCCHHHHHHHHHhc
Confidence 77654 34445579999 8999999999999999999999999999999998753
|
|
| >TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase | Back alignment and domain information |
|---|
Probab=98.52 E-value=7.7e-06 Score=74.62 Aligned_cols=179 Identities=22% Similarity=0.281 Sum_probs=111.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc--CCCCCeeEEE--Ee---cCh-----hhHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP--VTDLPLDVHL--MI---VEP-----EQRVPDFI 135 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~--~t~~~idaHL--mv---~dp-----~~~i~~~~ 135 (281)
...++++.++.+.+.|++.+-+. -. .++..++ .++.++.+++ -. .++ ...++.+.
T Consensus 34 ~~~~~~~~~~~a~~~~~~~v~~~---p~----------~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~al 100 (258)
T TIGR01949 34 GLVDIRKTVNEVAEGGADAVLLH---KG----------IVRRGHRGYGKDVGLIIHLSASTSLSPDPNDKRIVTTVEDAI 100 (258)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC---cc----------hhhhcccccCCCCcEEEEEcCCCCCCCCCCcceeeeeHHHHH
Confidence 44577888888888888877552 22 2222111 1355565555 11 111 12377889
Q ss_pred HcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEEC------CCCCHHHHHHh----h-ccCCEEEEEeecC
Q 023494 136 KAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLN------PATSLSAIECV----L-DVVDLVLIMSVNP 198 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~------p~t~ie~~~~~----l-~~vD~IlvmsV~p 198 (281)
+.||+.|-+..-..+ .+.+.++.+.++++|+.+-+.+. +..+.+.+... . ..+|||-+-
T Consensus 101 ~~Ga~~v~~~~~~g~~~~~~~~~~~~~i~~~~~~~g~~liv~~~~~Gvh~~~~~~~~~~~~~~~a~~~GADyikt~---- 176 (258)
T TIGR01949 101 RMGADAVSIHVNVGSDTEWEQIRDLGMIAEICDDWGVPLLAMMYPRGPHIDDRDPELVAHAARLGAELGADIVKTP---- 176 (258)
T ss_pred HCCCCEEEEEEecCCchHHHHHHHHHHHHHHHHHcCCCEEEEEeccCcccccccHHHHHHHHHHHHHHCCCEEecc----
Confidence 999998887643110 12344555556678877665332 12222333221 1 248999741
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-------hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-------PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-------~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+.+ .++.++++.+.. .+++.+.|||+ .++++++.++||+.+.+||+||+++||.+++++|+
T Consensus 177 -~~~------~~~~l~~~~~~~-----~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gia~g~~i~~~~dp~~~~~~l~ 244 (258)
T TIGR01949 177 -YTG------DIDSFRDVVKGC-----PAPVVVAGGPKTNSDREFLQMIKDAMEAGAAGVAVGRNIFQHDDPVGITKAVC 244 (258)
T ss_pred -CCC------CHHHHHHHHHhC-----CCcEEEecCCCCCCHHHHHHHHHHHHHcCCcEEehhhHhhcCCCHHHHHHHHH
Confidence 221 244445444432 36788889999 77899999999999999999999999999999999
Q ss_pred HhcC
Q 023494 272 TSKR 275 (281)
Q Consensus 272 ~~~~ 275 (281)
+.+.
T Consensus 245 ~~i~ 248 (258)
T TIGR01949 245 KIVH 248 (258)
T ss_pred HHHh
Confidence 8764
|
Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally. |
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-05 Score=72.67 Aligned_cols=186 Identities=13% Similarity=0.093 Sum_probs=113.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
..|+. +..+.+.+.|+|++|+==.|+.+ ....-..+++++|.+.+ .|+.+.==+.+. +-++.++++||+.|.+.
T Consensus 29 ~~dP~---~~A~~~~~~ga~~lhivDLd~a~-~g~~~n~~~i~~i~~~~-~~v~vGGGIrs~-e~~~~~l~~Ga~rvvig 102 (241)
T PRK14114 29 EKDPA---ELVEKLIEEGFTLIHVVDLSKAI-ENSVENLPVLEKLSEFA-EHIQIGGGIRSL-DYAEKLRKLGYRRQIVS 102 (241)
T ss_pred CCCHH---HHHHHHHHCCCCEEEEEECCCcc-cCCcchHHHHHHHHhhc-CcEEEecCCCCH-HHHHHHHHCCCCEEEEC
Confidence 34554 44556667899999985445432 12233467788887654 344332222332 25677889999999999
Q ss_pred ccccccccHHHHHHHHHHcCCcEEEEECC------------CC---CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhH
Q 023494 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLNP------------AT---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~G~k~Glai~p------------~t---~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
-++. +++ ++++.+.++|-++.+++.- .+ +.+.++++.+. +..|++++++---..|-+.-+.
T Consensus 103 T~a~--~~p-~~l~~~~~~~~~ivvslD~k~g~v~~~gw~~~~~~~~~e~~~~~~~~g~~~ii~tdI~rdGt~~G~d~el 179 (241)
T PRK14114 103 SKVL--EDP-SFLKFLKEIDVEPVFSLDTRGGKVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEHDFSL 179 (241)
T ss_pred chhh--CCH-HHHHHHHHhCCCEEEEEEccCCEEeeCCCeecCCCCHHHHHHHHHhcCCCEEEEEeechhhcCCCcCHHH
Confidence 8753 444 3455555666565544321 12 23444444332 6788888886422223343333
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-----C-CcEEEEcccccCC-CCHHHHHH
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-----G-ANALVAGSAVFGA-KDYAEAIK 268 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-----G-AD~~VvGSaIf~a-~dp~~~~~ 268 (281)
++++++.. +.++.+.||++ .+++..+.+. | ++.+++|++++.. =++++..+
T Consensus 180 ---~~~l~~~~-----~~pviasGGv~s~~Dl~~l~~~~~~~~g~v~gvivg~Al~~g~i~~~e~~~ 238 (241)
T PRK14114 180 ---TRKIAIEA-----EVKVFAAGGISSENSLKTAQRVHRETNGLLKGVIVGRAFLEGILTVEVMKR 238 (241)
T ss_pred ---HHHHHHHC-----CCCEEEECCCCCHHHHHHHHhcccccCCcEEEEEEehHHHCCCCCHHHHHH
Confidence 44444442 36888999999 7899998886 6 9999999999864 34554433
|
|
| >COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.48 E-value=9.3e-06 Score=71.52 Aligned_cols=175 Identities=24% Similarity=0.269 Sum_probs=117.7
Q ss_pred HHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh---------hhHHHHHHHcCCCEEEEccc
Q 023494 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP---------EQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 77 ~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp---------~~~i~~~~~aGAd~Itvh~E 147 (281)
..++++|+--|.+ .|.+-|+++|+..++|+.==++=.-| .+-++.++++|++.|.+-+-
T Consensus 40 ~Aa~~gGAvgiR~------------~gv~dIkai~~~v~vPIIGIiKrd~~~s~v~ITptlkeVd~L~~~Ga~IIA~DaT 107 (229)
T COG3010 40 LAAEQGGAVGIRI------------EGVEDIKAIRAVVDVPIIGIIKRDYPDSPVRITPTLKEVDALAEAGADIIAFDAT 107 (229)
T ss_pred HHHHhCCcceEee------------cchhhHHHHHhhCCCCeEEEEecCCCCCCceecccHHHHHHHHHCCCcEEEeecc
Confidence 4566778765543 26677888888888887654444322 23577899999999998764
Q ss_pred cc--ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhc
Q 023494 148 QS--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEK 223 (281)
Q Consensus 148 a~--~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~ 223 (281)
.- +..++.++++.+|..|..+.-.++ |.-|-+...-..+|+|- |.--|+++.. -....++-++++.+
T Consensus 108 ~R~RP~~~~~~~i~~~k~~~~l~MAD~S--t~ee~l~a~~~G~D~IG--TTLsGYT~~~~~~~~pDf~lvk~l~~----- 178 (229)
T COG3010 108 DRPRPDGDLEELIARIKYPGQLAMADCS--TFEEGLNAHKLGFDIIG--TTLSGYTGYTEKPTEPDFQLVKQLSD----- 178 (229)
T ss_pred cCCCCcchHHHHHHHhhcCCcEEEeccC--CHHHHHHHHHcCCcEEe--cccccccCCCCCCCCCcHHHHHHHHh-----
Confidence 32 222688888888877766655553 33333333334589884 4444665522 22223555666554
Q ss_pred CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 224 GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 224 ~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
.++.+-.-|.++ ++.++++++.||+.+||||||++ |++-.+++.+.+++
T Consensus 179 -~~~~vIAEGr~~tP~~Ak~a~~~Ga~aVvVGsAITR---p~~It~~F~~~ik~ 228 (229)
T COG3010 179 -AGCRVIAEGRYNTPEQAKKAIEIGADAVVVGSAITR---PEEITQWFVDAIKS 228 (229)
T ss_pred -CCCeEEeeCCCCCHHHHHHHHHhCCeEEEECcccCC---HHHHHHHHHHHHhc
Confidence 246788899999 99999999999999999999996 56777777776653
|
|
| >PLN02460 indole-3-glycerol-phosphate synthase | Back alignment and domain information |
|---|
Probab=98.47 E-value=8.6e-06 Score=77.02 Aligned_cols=196 Identities=23% Similarity=0.268 Sum_probs=137.0
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHH
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
-||| +++-|+ +..+..+..+++|+..|-| .-|..| |.=+++.++.+|+. ++.|+...=.+-||.. +..+..
T Consensus 128 ASPSkG~I~~~~-dp~~iA~~Ye~~GA~aISV-LTd~~~---F~Gs~e~L~~vr~~~v~lPvLrKDFIID~yQ-I~eAr~ 201 (338)
T PLN02460 128 ASPSRGVLRENF-DPVEIAQAYEKGGAACLSV-LTDEKY---FQGSFENLEAIRNAGVKCPLLCKEFIVDAWQ-IYYARS 201 (338)
T ss_pred CCCCCCccCCCC-CHHHHHHHHHhCCCcEEEE-ecCcCc---CCCCHHHHHHHHHcCCCCCEeeccccCCHHH-HHHHHH
Confidence 3666 344443 6777788899999998866 445432 34467788999986 8899988777888763 455778
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+|||.|.+-....+..++.++++.+++.|+.+-+-++....+ +..+. .++.|.+=..+. ..-....++- .
T Consensus 202 ~GADAVLLIaaiL~~~~L~~l~~~A~~LGme~LVEVH~~~El---erAl~~~ga~iIGINNRdL--~Tf~vDl~~t---~ 273 (338)
T PLN02460 202 KGADAILLIAAVLPDLDIKYMLKICKSLGMAALIEVHDEREM---DRVLGIEGVELIGINNRSL--ETFEVDISNT---K 273 (338)
T ss_pred cCCCcHHHHHHhCCHHHHHHHHHHHHHcCCeEEEEeCCHHHH---HHHHhcCCCCEEEEeCCCC--CcceECHHHH---H
Confidence 899999988776545579999999999999999999744333 33333 466664422221 1111122333 3
Q ss_pred HHHH-----HhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 215 DLRR-----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 215 ~lr~-----l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
++.. +++.. +..+..-+||+ ++++..+.++|+|.|-+|.++.+++||.+.+++|.
T Consensus 274 ~L~~~~~~~~i~~~--~~~~VsESGI~t~~Dv~~l~~~GadAvLVGEsLMr~~dp~~~l~~L~ 334 (338)
T PLN02460 274 KLLEGERGEQIREK--GIIVVGESGLFTPDDVAYVQNAGVKAVLVGESLVKQDDPGKGIAGLF 334 (338)
T ss_pred HHhhhccccccCCC--CeEEEECCCCCCHHHHHHHHHCCCCEEEECHHHhCCCCHHHHHHHHh
Confidence 3333 23111 23444569998 89999999999999999999999999999988875
|
|
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.9e-05 Score=71.32 Aligned_cols=175 Identities=12% Similarity=0.107 Sum_probs=107.4
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
|+.. ..+.+.+.|++++|+==.|+.. ...-..++++++.+.+..|+.+.==+.+.+ -++.+++.||+.|.+..+
T Consensus 31 dP~~---~a~~~~~~ga~~lhivDLd~a~--~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e-~~~~~l~~Ga~kvvigt~ 104 (232)
T PRK13586 31 NPIE---IASKLYNEGYTRIHVVDLDAAE--GVGNNEMYIKEISKIGFDWIQVGGGIRDIE-KAKRLLSLDVNALVFSTI 104 (232)
T ss_pred CHHH---HHHHHHHCCCCEEEEEECCCcC--CCcchHHHHHHHHhhCCCCEEEeCCcCCHH-HHHHHHHCCCCEEEECch
Confidence 5544 4556667899999984345532 233345788888763223544433334433 567788999999999988
Q ss_pred ccccccHHHHHHHHHHcCC-cEEEEECC------------C---CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHH
Q 023494 148 QSSTIHLHRTLNQIKDLGA-KAGVVLNP------------A---TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 148 a~~~~~i~~~l~~ik~~G~-k~Glai~p------------~---t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
+ ..+++.+-+.++++|- ++.+++.. . ++.+.++.+.+. +.-++++.++---..+-+.-+.+
T Consensus 105 a--~~~p~~~~~~~~~~g~~~ivvslD~~~~~~v~~~gw~~~~~~~~e~~~~l~~~g~~~ii~tdI~~dGt~~G~d~el~ 182 (232)
T PRK13586 105 V--FTNFNLFHDIVREIGSNRVLVSIDYDNTKRVLIRGWKEKSMEVIDGIKKVNELELLGIIFTYISNEGTTKGIDYNVK 182 (232)
T ss_pred h--hCCHHHHHHHHHHhCCCCEEEEEEcCCCCEEEccCCeeCCCCHHHHHHHHHhcCCCEEEEecccccccCcCcCHHHH
Confidence 5 4566655566677752 33333222 1 122333333332 56788888764222333444443
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+++++. . +. +.+.|||+ .+++..+.+.|+|.+++|+|++.
T Consensus 183 ---~~~~~~-~----~~-viasGGv~s~~Dl~~l~~~G~~gvivg~Aly~ 223 (232)
T PRK13586 183 ---DYARLI-R----GL-KEYAGGVSSDADLEYLKNVGFDYIIVGMAFYL 223 (232)
T ss_pred ---HHHHhC-C----CC-EEEECCCCCHHHHHHHHHCCCCEEEEehhhhc
Confidence 444332 1 23 55799999 68999999999999999999984
|
|
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=98.43 E-value=3.3e-05 Score=70.85 Aligned_cols=180 Identities=19% Similarity=0.149 Sum_probs=113.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+-.+..+...+.|++|+|+==.||...- ..+++++|++ ++.++.+===+. . +.++.++++||+.|.+.--+.
T Consensus 44 dP~~~A~~~~~~Ga~~lHvVDLdgg~~~----n~~~i~~i~~-~~~~vqvGGGIR-~-e~i~~~l~~Ga~rViigT~Av- 115 (262)
T PLN02446 44 SAAEFAEMYKRDGLTGGHVIMLGADDAS----LAAALEALRA-YPGGLQVGGGVN-S-ENAMSYLDAGASHVIVTSYVF- 115 (262)
T ss_pred CHHHHHHHHHHCCCCEEEEEECCCCCcc----cHHHHHHHHh-CCCCEEEeCCcc-H-HHHHHHHHcCCCEEEEchHHH-
Confidence 3445566778889999998444773222 3678888887 555655533333 3 578889999999999986642
Q ss_pred ccc----HHHHHHHHHHcC---CcEEEEEC--CC------------CC---HHHHHHhhc-cCCEEEEEeecCCCCCCcc
Q 023494 151 TIH----LHRTLNQIKDLG---AKAGVVLN--PA------------TS---LSAIECVLD-VVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 151 ~~~----i~~~l~~ik~~G---~k~Glai~--p~------------t~---ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f 205 (281)
.+ +.-+-+.++++| +-+++... .. |. .+.+..+.+ .+..+++-.+.---..+-+
T Consensus 116 -~~~~~~p~~v~~~~~~~G~~~IvvsiD~k~~~g~~~Va~~GW~~~t~~~~~e~~~~~~~~g~~eii~TdI~rDGtl~G~ 194 (262)
T PLN02446 116 -RDGQIDLERLKDLVRLVGKQRLVLDLSCRKKDGRYYVVTDRWQKFSDLAVDEETLEFLAAYCDEFLVHGVDVEGKRLGI 194 (262)
T ss_pred -hCCCCCHHHHHHHHHHhCCCCEEEEEEEEecCCCEEEEECCCcccCCCCHHHHHHHHHHhCCCEEEEEEEcCCCcccCC
Confidence 33 655666667775 23333332 11 22 333344443 3788887666532111223
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc--CCcEEEEcccc--cCCC-CHHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA--GANALVAGSAV--FGAK-DYAEAI 267 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a--GAD~~VvGSaI--f~a~-dp~~~~ 267 (281)
. ++-++++++.. +++|.+.|||+ .+.+..+.+. |...+|+|+|| |... +.++++
T Consensus 195 d---~el~~~l~~~~-----~ipVIASGGv~sleDi~~L~~~g~g~~gvIvGkAl~~y~g~~~l~ea~ 254 (262)
T PLN02446 195 D---EELVALLGEHS-----PIPVTYAGGVRSLDDLERVKVAGGGRVDVTVGSALDIFGGNLPYDDVV 254 (262)
T ss_pred C---HHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHcCCCCEEEEEEeeHHHhCCCccHHHHH
Confidence 3 33444444442 46899999999 8899999887 57889999999 7543 455444
|
|
| >PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.2e-05 Score=71.81 Aligned_cols=171 Identities=23% Similarity=0.306 Sum_probs=113.9
Q ss_pred HHHHHHHHcCCCeEEEE-eeeCcccccccCCHHHHHH-------cCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 74 EQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDA-------LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiD-ImDG~fvpn~~~G~~~I~~-------ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
++.+.+.++|+|.+-+- ..|..|... .+++++.. +|+..+.|+-+.++-+|+..=+..+...|||+|=+-
T Consensus 33 ~ea~~l~~~GvDgiiveN~~D~Py~~~--~~~etvaaM~~i~~~v~~~~~~p~GVnvL~nd~~aalaiA~A~ga~FIRv~ 110 (254)
T PF03437_consen 33 REAEALEEGGVDGIIVENMGDVPYPKR--VGPETVAAMARIAREVRREVSVPVGVNVLRNDPKAALAIAAATGADFIRVN 110 (254)
T ss_pred HHHHHHHHCCCCEEEEecCCCCCccCC--CCHHHHHHHHHHHHHHHHhCCCCEEeeeecCCCHHHHHHHHHhCCCEEEec
Confidence 45567889999997663 445656544 57777664 455567899999999999877778888999988743
Q ss_pred cccc--------ccccHHHHHHHHHHcCCcEEE--EECCC-------CCHHHHH-Hhhc--cCCEEEEEeecCCC-CCCc
Q 023494 146 CEQS--------STIHLHRTLNQIKDLGAKAGV--VLNPA-------TSLSAIE-CVLD--VVDLVLIMSVNPGF-GGQS 204 (281)
Q Consensus 146 ~Ea~--------~~~~i~~~l~~ik~~G~k~Gl--ai~p~-------t~ie~~~-~~l~--~vD~IlvmsV~pG~-~GQ~ 204 (281)
.... -.....++++.=|+.|.++-+ .+++. .+++... .... .+|.|.+- |. +|++
T Consensus 111 ~~~g~~~~d~G~~~~~a~e~~r~R~~l~a~v~ilaDV~~kh~~~l~~~~~~~~~~~a~~~~~aDaviVt----G~~TG~~ 186 (254)
T PF03437_consen 111 VFVGAYVTDEGIIEGCAGELLRYRKRLGADVKILADVHVKHSSPLATRDLEEAAKDAVERGGADAVIVT----GKATGEP 186 (254)
T ss_pred CEEceecccCccccccHHHHHHHHHHcCCCeEEEeeechhhcccCCCCCHHHHHHHHHHhcCCCEEEEC----CcccCCC
Confidence 2111 012355677766666666433 33322 2343332 2212 38998873 33 3544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..+++|+++|+..+ +++-|.+|+|++|+.++.+. ||.+||||++=+
T Consensus 187 ---~~~~~l~~vr~~~~-----~PVlvGSGvt~~Ni~~~l~~-ADG~IVGS~~K~ 232 (254)
T PF03437_consen 187 ---PDPEKLKRVREAVP-----VPVLVGSGVTPENIAEYLSY-ADGAIVGSYFKK 232 (254)
T ss_pred ---CCHHHHHHHHhcCC-----CCEEEecCCCHHHHHHHHHh-CCEEEEeeeeee
Confidence 34666777776643 68889999999999998876 999999999754
|
It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions. |
| >PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=2e-05 Score=70.76 Aligned_cols=171 Identities=17% Similarity=0.106 Sum_probs=118.8
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-----CCCCCeeEEEEecChhhHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-----VTDLPLDVHLMIVEPEQRVPD 133 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-----~t~~~idaHLmv~dp~~~i~~ 133 (281)
.+.|-+-..|..+..+..+.+.++|++.++|= -+..-..+.++.|++ .++..+-+.- |.|++ -++.
T Consensus 16 ~vi~Vvr~~~~~~a~~~~~al~~gGi~~iEiT-------~~tp~a~~~i~~l~~~~~~~~p~~~vGaGT-Vl~~e-~a~~ 86 (222)
T PRK07114 16 GMVPVFYHADVEVAKKVIKACYDGGARVFEFT-------NRGDFAHEVFAELVKYAAKELPGMILGVGS-IVDAA-TAAL 86 (222)
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEe-------CCCCcHHHHHHHHHHHHHhhCCCeEEeeEe-CcCHH-HHHH
Confidence 47787887888888888899999999999882 223346677777752 2333344422 24544 5678
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC-CCCCccchhHHHH
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG-FGGQSFIESQVKK 212 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG-~~GQ~f~~~~l~k 212 (281)
+.++||+++.-+.- -.++++.++++|+-..--. -||-|....+-..+|.|=+ +|. ..| ..-
T Consensus 87 a~~aGA~FiVsP~~------~~~v~~~~~~~~i~~iPG~--~TpsEi~~A~~~Ga~~vKl---FPA~~~G-------~~~ 148 (222)
T PRK07114 87 YIQLGANFIVTPLF------NPDIAKVCNRRKVPYSPGC--GSLSEIGYAEELGCEIVKL---FPGSVYG-------PGF 148 (222)
T ss_pred HHHcCCCEEECCCC------CHHHHHHHHHcCCCEeCCC--CCHHHHHHHHHCCCCEEEE---CcccccC-------HHH
Confidence 89999998876554 2367888888886543322 2566666666556888754 553 233 233
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCCh--hcHHHHHHcCCcEEEEcccccCC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGP--KNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~--e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|+.++.-++ +.++...|||++ +|+.+.+++|+..+.+||.||+.
T Consensus 149 ikal~~p~p----~i~~~ptGGV~~~~~n~~~yl~aGa~avg~Gs~L~~~ 194 (222)
T PRK07114 149 VKAIKGPMP----WTKIMPTGGVEPTEENLKKWFGAGVTCVGMGSKLIPK 194 (222)
T ss_pred HHHHhccCC----CCeEEeCCCCCcchhcHHHHHhCCCEEEEEChhhcCc
Confidence 555555554 478999999998 89999999999999999999964
|
|
| >PRK11572 copper homeostasis protein CutC; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.1e-05 Score=73.23 Aligned_cols=163 Identities=20% Similarity=0.249 Sum_probs=101.3
Q ss_pred CHHHHHHHHHHcCCCeEEE--EeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEec-Ch-------h------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHV--DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV-EP-------E------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHi--DImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~-dp-------~------~~i~~~ 134 (281)
++++ ...+.++|+|.|++ +...|+.+| +..+++.+++..++| +|.|+. ++ . +-++.+
T Consensus 10 s~~~-a~~A~~~GAdRiELc~~L~~GGlTP----S~g~i~~~~~~~~ip--v~vMIRPR~gdF~Ys~~E~~~M~~di~~~ 82 (248)
T PRK11572 10 SMEC-ALTAQQAGADRIELCAAPKEGGLTP----SLGVLKSVRERVTIP--VHPIIRPRGGDFCYSDGEFAAMLEDIATV 82 (248)
T ss_pred CHHH-HHHHHHcCCCEEEEccCcCCCCcCC----CHHHHHHHHHhcCCC--eEEEEecCCCCCCCCHHHHHHHHHHHHHH
Confidence 4444 44666789999998 566788888 455677777765666 445873 21 1 125567
Q ss_pred HHcCCCEEEEcccccc----cccHHHHHHHHHHcCCcEEE--EECC-CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGV--VLNP-ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~Gl--ai~p-~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~ 206 (281)
.++|+|++.|..-... .+..+++++.++ |+++-+ ++.. ..+.+.++.+++. +|.||- -+|++-.
T Consensus 83 ~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~al~~l~~lG~~rILT------SGg~~~a 154 (248)
T PRK11572 83 RELGFPGLVTGVLDVDGHVDMPRMRKIMAAAG--PLAVTFHRAFDMCANPLNALKQLADLGVARILT------SGQQQDA 154 (248)
T ss_pred HHcCCCEEEEeeECCCCCcCHHHHHHHHHHhc--CCceEEechhhccCCHHHHHHHHHHcCCCEEEC------CCCCCCH
Confidence 8899999999875421 112444454442 344432 3322 1344555555553 777762 1343334
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~V 252 (281)
.+.++.|+++.+... +..|.+.||||++|+.++.+.|+.-|=
T Consensus 155 ~~g~~~L~~lv~~a~----~~~Im~GgGV~~~Nv~~l~~tG~~~~H 196 (248)
T PRK11572 155 EQGLSLIMELIAASD----GPIIMAGAGVRLSNLHKFLDAGVREVH 196 (248)
T ss_pred HHHHHHHHHHHHhcC----CCEEEeCCCCCHHHHHHHHHcCCCEEe
Confidence 555666666655432 234899999999999999999998664
|
|
| >PRK07226 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.9e-05 Score=71.28 Aligned_cols=179 Identities=21% Similarity=0.266 Sum_probs=108.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-C-CCCCeeEEEEecC---hh-------hHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-V-TDLPLDVHLMIVE---PE-------QRVPDFI 135 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~-t~~~idaHLmv~d---p~-------~~i~~~~ 135 (281)
...++++.++.+.+.|++.+-++ +..++..++ . .+.++.+++=..- |. ..++.+.
T Consensus 37 ~~~d~~~~~~~a~~~~~~av~v~-------------~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A~ 103 (267)
T PRK07226 37 GLVDIRDTVNKVAEGGADAVLMH-------------KGLARHGHRGYGRDVGLIVHLSASTSLSPDPNDKVLVGTVEEAI 103 (267)
T ss_pred CcCCHHHHHHHHHhcCCCEEEeC-------------HhHHhhhccccCCCCcEEEEEcCCCCCCCCCCcceeeecHHHHH
Confidence 44577778888888888877553 223333222 1 2344444433111 11 1377889
Q ss_pred HcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEE-------CCCCCHHHHHHhh-----ccCCEEEEEeec
Q 023494 136 KAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVL-------NPATSLSAIECVL-----DVVDLVLIMSVN 197 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai-------~p~t~ie~~~~~l-----~~vD~IlvmsV~ 197 (281)
+.|||.+-+..-..+ .+++.++.+.++++|+.+-+.. ......+.+.... ..+|||=.
T Consensus 104 ~~Gad~v~~~~~~g~~~~~~~~~~~~~v~~~~~~~g~pl~vi~~~~g~~~e~~~~~~~i~~a~~~a~e~GAD~vKt---- 179 (267)
T PRK07226 104 KLGADAVSVHVNVGSETEAEMLEDLGEVAEECEEWGMPLLAMMYPRGPGIKNEYDPEVVAHAARVAAELGADIVKT---- 179 (267)
T ss_pred HcCCCEEEEEEecCChhHHHHHHHHHHHHHHHHHcCCcEEEEEecCCCccCCCccHHHHHHHHHHHHHHCCCEEee----
Confidence 999998777633111 1245566666777888766542 1111222222211 13798832
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhc-------HHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------AYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~-------i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
++.| .++.++++.+. ..++|.+.|||+.+| +.+++++||+.+.+|++||+.+||++.+++|
T Consensus 180 -~~~~------~~~~l~~~~~~-----~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gis~gr~i~~~~~p~~~~~~l 247 (267)
T PRK07226 180 -NYTG------DPESFREVVEG-----CPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGVAVGRNVFQHEDPEAITRAI 247 (267)
T ss_pred -CCCC------CHHHHHHHHHh-----CCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEehhhhhhcCCCHHHHHHHH
Confidence 2322 12333333332 136899999999876 7777899999999999999999999999999
Q ss_pred HHhcC
Q 023494 271 KTSKR 275 (281)
Q Consensus 271 ~~~~~ 275 (281)
+..+.
T Consensus 248 ~~~v~ 252 (267)
T PRK07226 248 SAVVH 252 (267)
T ss_pred HHHHh
Confidence 98654
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=98.38 E-value=2e-05 Score=73.28 Aligned_cols=142 Identities=18% Similarity=0.234 Sum_probs=97.6
Q ss_pred CCCCeeEEEEecChhhHHH---HHHHcC-CCEEEEcc-----cc----c--ccccHHHHHHHHHHc-CCcEEEEECCCC-
Q 023494 114 TDLPLDVHLMIVEPEQRVP---DFIKAG-ADIVSVHC-----EQ----S--STIHLHRTLNQIKDL-GAKAGVVLNPAT- 176 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~---~~~~aG-Ad~Itvh~-----Ea----~--~~~~i~~~l~~ik~~-G~k~Glai~p~t- 176 (281)
.+.|+.+.++-.+++.|.+ .+.++| +|+|-++. .. . ..+.+.++++++|+. .+.+.+=++|+.
T Consensus 90 ~~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~ 169 (301)
T PRK07259 90 FDTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVT 169 (301)
T ss_pred cCCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCch
Confidence 3678999999999987754 456788 99998832 11 0 123467888888887 677777777653
Q ss_pred CHHHHHHhhc--cCCEEEEEeecCC------------------CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 177 SLSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 177 ~ie~~~~~l~--~vD~IlvmsV~pG------------------~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
....+.+.+. .+|.|.+...-+| ..|....|..++.++++++.. +++|...|||+
T Consensus 170 ~~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~-----~ipvi~~GGI~ 244 (301)
T PRK07259 170 DIVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAV-----DIPIIGMGGIS 244 (301)
T ss_pred hHHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhC-----CCCEEEECCCC
Confidence 2223333333 3788765332222 223333455677777777653 47899999995
Q ss_pred -hhcHHHHHHcCCcEEEEcccccCC
Q 023494 237 -PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+.+.+++.+|||.+-+||+++..
T Consensus 245 ~~~da~~~l~aGAd~V~igr~ll~~ 269 (301)
T PRK07259 245 SAEDAIEFIMAGASAVQVGTANFYD 269 (301)
T ss_pred CHHHHHHHHHcCCCceeEcHHHhcC
Confidence 999999999999999999998863
|
|
| >PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF | Back alignment and domain information |
|---|
Probab=98.37 E-value=9e-06 Score=71.86 Aligned_cols=163 Identities=22% Similarity=0.312 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC-hh-------------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE-PE-------------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d-p~-------------~~i~~~ 134 (281)
++++ +..+.+.|+|.|++= ...|..+|. ..+++.+++..++| +|.|+.. .+ +-++.+
T Consensus 9 s~~~-a~~A~~~GAdRiELc~~l~~GGlTPS----~g~i~~~~~~~~ip--v~vMIRpr~gdF~Ys~~E~~~M~~dI~~~ 81 (201)
T PF03932_consen 9 SLED-ALAAEAGGADRIELCSNLEVGGLTPS----LGLIRQAREAVDIP--VHVMIRPRGGDFVYSDEEIEIMKEDIRML 81 (201)
T ss_dssp SHHH-HHHHHHTT-SEEEEEBTGGGT-B-------HHHHHHHHHHTTSE--EEEE--SSSS-S---HHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHcCCCEEEECCCccCCCcCcC----HHHHHHHHhhcCCc--eEEEECCCCCCccCCHHHHHHHHHHHHHH
Confidence 3444 455678899999983 566888884 56788887755555 5558852 21 135567
Q ss_pred HHcCCCEEEEcccccc-ccc---HHHHHHHHHHcCCcEEE--EECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGV--VLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~-~~~---i~~~l~~ik~~G~k~Gl--ai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~ 206 (281)
.++|+|.+.|.+-... .-+ ..++++.++ |+.+-. ++..- .+.+.++.+++ .+|.||- . +|..-.
T Consensus 82 ~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~--~~~~tFHRAfD~~~d~~~al~~L~~lG~~rVLT--S----Gg~~~a 153 (201)
T PF03932_consen 82 RELGADGFVFGALTEDGEIDEEALEELIEAAG--GMPVTFHRAFDEVPDPEEALEQLIELGFDRVLT--S----GGAPTA 153 (201)
T ss_dssp HHTT-SEEEE--BETTSSB-HHHHHHHHHHHT--TSEEEE-GGGGGSSTHHHHHHHHHHHT-SEEEE--S----TTSSST
T ss_pred HHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC--CCeEEEeCcHHHhCCHHHHHHHHHhcCCCEEEC--C----CCCCCH
Confidence 8999999999975321 112 334444432 444443 33222 23344555544 4787762 2 333333
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANAL 251 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~ 251 (281)
.+.++.|+++.+... ..+.|.+.|||+++|++.+.+ .|+.-|
T Consensus 154 ~~g~~~L~~lv~~a~---~~i~Im~GgGv~~~nv~~l~~~tg~~~~ 196 (201)
T PF03932_consen 154 LEGIENLKELVEQAK---GRIEIMPGGGVRAENVPELVEETGVREI 196 (201)
T ss_dssp TTCHHHHHHHHHHHT---TSSEEEEESS--TTTHHHHHHHHT-SEE
T ss_pred HHHHHHHHHHHHHcC---CCcEEEecCCCCHHHHHHHHHhhCCeEE
Confidence 455677776665533 358899999999999999988 888765
|
A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=98.37 E-value=9.6e-05 Score=67.68 Aligned_cols=171 Identities=17% Similarity=0.260 Sum_probs=111.9
Q ss_pred HHHHHHHHcCCCeEEEE-eeeCcccccccCCHHHHHH-------cCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 74 EQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDA-------LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiD-ImDG~fvpn~~~G~~~I~~-------ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
++.+.+.++|+|.+-+- ..|..|.+ ..+++++.. +|+....|+-+.++-+|+..=+..+..+|||+|=+-
T Consensus 32 ~ea~~l~~~GvD~viveN~~d~P~~~--~~~p~tva~m~~i~~~v~~~~~~p~GvnvL~nd~~aal~iA~a~ga~FIRv~ 109 (257)
T TIGR00259 32 KDAMALEEGGVDAVMFENFFDAPFLK--EVDPETVAAMAVIAGQLKSDVSIPLGINVLRNDAVAALAIAMAVGAKFIRVN 109 (257)
T ss_pred HHHHHHHhCCCCEEEEecCCCCCCcC--CCCHHHHHHHHHHHHHHHHhcCCCeeeeeecCCCHHHHHHHHHhCCCEEEEc
Confidence 45567789999987553 33455544 456666554 455556799999999999877888889999988772
Q ss_pred cccc---c-----cccHHHHHHHHHHcCCcEEE--EECC-------CCCHHH-HHHhhc--cCCEEEEEeecCCC-CCCc
Q 023494 146 CEQS---S-----TIHLHRTLNQIKDLGAKAGV--VLNP-------ATSLSA-IECVLD--VVDLVLIMSVNPGF-GGQS 204 (281)
Q Consensus 146 ~Ea~---~-----~~~i~~~l~~ik~~G~k~Gl--ai~p-------~t~ie~-~~~~l~--~vD~IlvmsV~pG~-~GQ~ 204 (281)
.... + .....++++.-++.|..+-+ .+++ ..++++ ++.... .+|-|.+- |. +|+.
T Consensus 110 ~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~~~e~a~~~~~~~~aDavivt----G~~TG~~ 185 (257)
T TIGR00259 110 VLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRDLESIALDTVERGLADAVILS----GKTTGTE 185 (257)
T ss_pred cEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCCHHHHHHHHHHhcCCCEEEEC----cCCCCCC
Confidence 1110 0 12456777776665644443 2322 233433 332222 27988763 44 4777
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+..+.+++++ +.. .+.++-+.||+|++|+.++++. +|.+++||.+=
T Consensus 186 ~d~~~l~~vr---~~~----~~~PvllggGvt~eNv~e~l~~-adGviVgS~~K 231 (257)
T TIGR00259 186 VDLELLKLAK---ETV----KDTPVLAGSGVNLENVEELLSI-ADGVIVATTIK 231 (257)
T ss_pred CCHHHHHHHH---hcc----CCCeEEEECCCCHHHHHHHHhh-CCEEEECCCcc
Confidence 7766655443 322 1358889999999999999997 99999999974
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.8e-05 Score=72.17 Aligned_cols=185 Identities=16% Similarity=0.194 Sum_probs=118.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCC-CCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~-~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
.|+..+.-.++.+++.+...| +-+-.++ |.+.+..=...++.+.+..+ .|+-+||==....+.++.+.++|.+.|-
T Consensus 24 ~n~e~~~avi~aAe~~~~PvI-l~~~~~~~~~~~~~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~sVm 102 (282)
T TIGR01859 24 NNLEWTQAILEAAEEENSPVI-IQVSEGAIKYMGGYKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFSSVM 102 (282)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcCcchhhccCcHHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 344456667778888777765 3333332 11111111123444444456 8999998323345578889999998876
Q ss_pred Ecccccccc----cHHHHHHHHHHcCCcEEEEECC--------------CCCHHHHHHhhc--cCCEEE--EEeecCCCC
Q 023494 144 VHCEQSSTI----HLHRTLNQIKDLGAKAGVVLNP--------------ATSLSAIECVLD--VVDLVL--IMSVNPGFG 201 (281)
Q Consensus 144 vh~Ea~~~~----~i~~~l~~ik~~G~k~Glai~p--------------~t~ie~~~~~l~--~vD~Il--vmsV~pG~~ 201 (281)
+=.-..+.+ ...++.+.++++|+.+-..+.. -|..++..++.. .+|++. +.++|+-+.
T Consensus 103 id~s~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~~tgvD~Lavs~Gt~hg~~~ 182 (282)
T TIGR01859 103 IDGSHLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVKETGVDYLAAAIGTSHGKYK 182 (282)
T ss_pred ECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHHHHCcCEEeeccCccccccC
Confidence 654332211 2345566667788766533322 356777777765 599988 556665554
Q ss_pred CCccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcCCcEEEEcccccC
Q 023494 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+. .+-.+++|+++++.. ++++..-| ||+.+++++++++|++.+-+++.+..
T Consensus 183 ~~--~~l~~e~L~~i~~~~-----~iPlv~hGgSGi~~e~i~~~i~~Gi~kiNv~T~l~~ 235 (282)
T TIGR01859 183 GE--PGLDFERLKEIKELT-----NIPLVLHGASGIPEEQIKKAIKLGIAKINIDTDCRI 235 (282)
T ss_pred CC--CccCHHHHHHHHHHh-----CCCEEEECCCCCCHHHHHHHHHcCCCEEEECcHHHH
Confidence 42 223377777777764 37899999 99999999999999999999999863
|
This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase. |
| >cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins | Back alignment and domain information |
|---|
Probab=98.35 E-value=1.1e-05 Score=76.06 Aligned_cols=178 Identities=20% Similarity=0.244 Sum_probs=115.3
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC-------HHHHHHcCcCCCCCeeEEEEec--Ch
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-------PLVVDALRPVTDLPLDVHLMIV--EP 127 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G-------~~~I~~ir~~t~~~idaHLmv~--dp 127 (281)
...+..||...+...+.+..+.+++.|+|.|++-+-=-+-.|.. .| .+.++++|+.+++|+.+-|=.. +.
T Consensus 99 ~~pvi~si~g~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~-~g~~~~~~~~eiv~~v~~~~~iPv~vKl~p~~~~~ 177 (325)
T cd04739 99 SIPVIASLNGVSAGGWVDYARQIEEAGADALELNIYALPTDPDI-SGAEVEQRYLDILRAVKSAVTIPVAVKLSPFFSAL 177 (325)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCc-ccchHHHHHHHHHHHHHhccCCCEEEEcCCCccCH
Confidence 34577889877777778888888899999998865210001111 22 3668888887788988854322 33
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
....+.+.++|+|.|++|.-.. + ..+...+ .. .+ ...|++|....|
T Consensus 178 ~~~a~~l~~~Gadgi~~~nt~~---------------~----~~id~~~----~~-------~~----~~~glSG~~~~~ 223 (325)
T cd04739 178 AHMAKQLDAAGADGLVLFNRFY---------------Q----PDIDLET----LE-------VV----PNLLLSSPAEIR 223 (325)
T ss_pred HHHHHHHHHcCCCeEEEEcCcC---------------C----CCccccc----cc-------ee----cCCCcCCccchh
Confidence 3456677888999998875310 0 0010000 00 00 124567777778
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CC-HHHHHHHHHHhc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD-YAEAIKGIKTSK 274 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~d-p~~~~~~l~~~~ 274 (281)
..++.++++++.. +++|...|||. .+.+.+++.+|||.+=+||+++.. .+ +.+..++|.+.+
T Consensus 224 ~al~~v~~v~~~~-----~ipIig~GGI~s~~Da~e~l~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l 288 (325)
T cd04739 224 LPLRWIAILSGRV-----KASLAASGGVHDAEDVVKYLLAGADVVMTTSALLRHGPDYIGTLLAGLEAWM 288 (325)
T ss_pred HHHHHHHHHHccc-----CCCEEEECCCCCHHHHHHHHHcCCCeeEEehhhhhcCchHHHHHHHHHHHHH
Confidence 8887777776543 47899999999 888999999999999999998863 22 233444444433
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive. |
| >PRK07315 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=3.1e-05 Score=72.24 Aligned_cols=198 Identities=10% Similarity=0.158 Sum_probs=124.0
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC--CCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t--~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+.|+..+.-.++.+++.+...| +.+-.++ |...+.+-..+++.+.+.. +.|+.+||==. ..+.+..+.++|.+.
T Consensus 25 ~~n~e~~~avi~aAe~~~sPvI-lq~s~~~~~~~~~~~~~~~~~~~~a~~~~~~vPV~lHLDH~-~~~~i~~ai~~GftS 102 (293)
T PRK07315 25 TNNLEWTQAILRAAEAKKAPVL-IQTSMGAAKYMGGYKVCKNLIENLVESMGITVPVAIHLDHG-HYEDALECIEVGYTS 102 (293)
T ss_pred ECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCcEEEECCCC-CHHHHHHHHHcCCCE
Confidence 3344455566778888877765 5554542 2111111123344443334 56999998555 234688899999988
Q ss_pred EEEcccccccc----cHHHHHHHHHHcCCcEEEE-----------E--CCCCCHHHHHHhhc-cCCEEEEE--eecCCCC
Q 023494 142 VSVHCEQSSTI----HLHRTLNQIKDLGAKAGVV-----------L--NPATSLSAIECVLD-VVDLVLIM--SVNPGFG 201 (281)
Q Consensus 142 Itvh~Ea~~~~----~i~~~l~~ik~~G~k~Gla-----------i--~p~t~ie~~~~~l~-~vD~Ilvm--sV~pG~~ 201 (281)
|-+=.-..+.+ ...++.+.++++|..+-.. + +.-|..+...++.. .+|++.+- ++|--+.
T Consensus 103 Vm~d~S~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~~tgvD~LAv~iG~vHG~y~ 182 (293)
T PRK07315 103 IMFDGSHLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMVETGIDFLAAGIGNIHGPYP 182 (293)
T ss_pred EEEcCCCCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHHHcCCCEEeeccccccccCC
Confidence 87764332222 2345555566666544211 1 11256666666654 48999876 6642222
Q ss_pred C-CccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 202 G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 202 G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+ .+ +-.+++|+++++.+. ++|+..-|| |+.++++++++.|++.+-++|+|+. ++.++++++.+.
T Consensus 183 t~~k--~l~~e~L~~i~~~~~----~iPlVlhGGSGi~~e~~~~~i~~Gi~KiNv~T~i~~--~~~~~~~~~~~~ 249 (293)
T PRK07315 183 ENWE--GLDLDHLEKLTEAVP----GFPIVLHGGSGIPDDQIQEAIKLGVAKVNVNTECQI--AFANATRKFARD 249 (293)
T ss_pred CCCC--cCCHHHHHHHHHhcc----CCCEEEECCCCCCHHHHHHHHHcCCCEEEEccHHHH--HHHHHHHHHHHh
Confidence 2 12 344777777777652 368999999 9999999999999999999999996 677777776543
|
|
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=98.34 E-value=3e-06 Score=76.14 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=110.2
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+..+..|+..+ .+.+.+.|++++|+==.|+.. ....-..+.++.+.+.+..|+.+.==+.+.+ -++.+.++||+.
T Consensus 24 ~~~~~~dP~~~---a~~~~~~g~~~l~ivDLdaa~-~g~~~n~~~i~~i~~~~~~~i~vgGGIrs~e-d~~~ll~~Ga~~ 98 (229)
T PF00977_consen 24 ETVYSGDPVEV---AKAFNEQGADELHIVDLDAAK-EGRGSNLELIKEIAKETGIPIQVGGGIRSIE-DAERLLDAGADR 98 (229)
T ss_dssp EECECCCHHHH---HHHHHHTT-SEEEEEEHHHHC-CTHHHHHHHHHHHHHHSSSEEEEESSE-SHH-HHHHHHHTT-SE
T ss_pred eeEECcCHHHH---HHHHHHcCCCEEEEEEccCcc-cCchhHHHHHHHHHhcCCccEEEeCccCcHH-HHHHHHHhCCCE
Confidence 33444565544 556677899999984334421 0111234577777776666666554555543 567788999999
Q ss_pred EEEcccccccccHHHHHHHHHHcCC-cEEEE--ECCC--------------CCHHHHHHhhcc-CCEEEEEeecCCCCCC
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGA-KAGVV--LNPA--------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~-k~Gla--i~p~--------------t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ 203 (281)
|.+..++ ..+++-+-+.++++|. ++.++ ...+ ++.+.++++.+. +..|+++.++---.+|
T Consensus 99 Vvigt~~--~~~~~~l~~~~~~~g~~~ivvslD~~~g~~v~~~gw~~~~~~~~~~~~~~~~~~g~~~ii~tdi~~dGt~~ 176 (229)
T PF00977_consen 99 VVIGTEA--LEDPELLEELAERYGSQRIVVSLDARDGYKVATNGWQESSGIDLEEFAKRLEELGAGEIILTDIDRDGTMQ 176 (229)
T ss_dssp EEESHHH--HHCCHHHHHHHHHHGGGGEEEEEEEEETEEEEETTTTEEEEEEHHHHHHHHHHTT-SEEEEEETTTTTTSS
T ss_pred EEeChHH--hhchhHHHHHHHHcCcccEEEEEEeeeceEEEecCccccCCcCHHHHHHHHHhcCCcEEEEeeccccCCcC
Confidence 9999885 3444445555566665 44433 3322 122334443332 6788888886422333
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-+.- +.++++++.. +.++.+.|||+ .+++..+.+.|++.+++|++++.
T Consensus 177 G~d~---~~~~~l~~~~-----~~~viasGGv~~~~Dl~~l~~~G~~gvivg~al~~ 225 (229)
T PF00977_consen 177 GPDL---ELLKQLAEAV-----NIPVIASGGVRSLEDLRELKKAGIDGVIVGSALHE 225 (229)
T ss_dssp S--H---HHHHHHHHHH-----SSEEEEESS--SHHHHHHHHHTTECEEEESHHHHT
T ss_pred CCCH---HHHHHHHHHc-----CCCEEEecCCCCHHHHHHHHHCCCcEEEEehHhhC
Confidence 3433 4455555554 36899999995 89999999999999999999975
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=5.8e-05 Score=67.91 Aligned_cols=172 Identities=20% Similarity=0.176 Sum_probs=105.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.+. ++++|+==.||.. ....-..+.++++.+.++.|+.+.==+.+.+ .++.+.++|++.+.+.-++
T Consensus 31 dp~~~a~~~~~~-~~~l~ivDldga~-~g~~~n~~~i~~i~~~~~~pv~~gGGIrs~e-dv~~l~~~G~~~vivGtaa-- 105 (228)
T PRK04128 31 DPVEIALRFSEY-VDKIHVVDLDGAF-EGKPKNLDVVKNIIRETGLKVQVGGGLRTYE-SIKDAYEIGVENVIIGTKA-- 105 (228)
T ss_pred CHHHHHHHHHHh-CCEEEEEECcchh-cCCcchHHHHHHHHhhCCCCEEEcCCCCCHH-HHHHHHHCCCCEEEECchh--
Confidence 445556667666 8999982223421 1112346778888776667766644445543 5667788999999998775
Q ss_pred cccHHHHHHHHHHcCCcEEEEECC---------------CCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNP---------------ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p---------------~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
. ++.-+-+.++++|- +.+++.. -++.+.++.+.+.+..+++++++---..|-+. .+
T Consensus 106 ~-~~~~l~~~~~~~g~-ivvslD~~~g~v~~~gw~~~~~~~~~~~~~~~~~~~~~ii~t~i~~dGt~~G~d-----~l-- 176 (228)
T PRK04128 106 F-DLEFLEKVTSEFEG-ITVSLDVKGGRIAVKGWLEESSIKVEDAYEMLKNYVNRFIYTSIERDGTLTGIE-----EI-- 176 (228)
T ss_pred c-CHHHHHHHHHHcCC-EEEEEEccCCeEecCCCeEcCCCCHHHHHHHHHHHhCEEEEEeccchhcccCHH-----HH--
Confidence 3 44433333445553 4443321 12234344443346788888886421222222 22
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.+.+. +.++.+.|||+ .+.+.++.+.|++.+++|++++...
T Consensus 177 -~~~~~----~~pviasGGv~~~~Dl~~l~~~g~~gvivg~al~~g~ 218 (228)
T PRK04128 177 -ERFWG----DEEFIYAGGVSSAEDVKKLAEIGFSGVIIGKALYEGR 218 (228)
T ss_pred -HHhcC----CCCEEEECCCCCHHHHHHHHHCCCCEEEEEhhhhcCC
Confidence 22221 46888999999 7999999999999999999998653
|
|
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=98.32 E-value=2.4e-05 Score=71.44 Aligned_cols=168 Identities=19% Similarity=0.070 Sum_probs=101.1
Q ss_pred HHHHHHHHcCCCeEEE-EeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc-
Q 023494 74 EQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST- 151 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHi-DImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~- 151 (281)
+..+...+.|++|+|+ |. |. + ..+.+++|.+.++.++.+===+ +. +-++.++++||+.|.+...+...
T Consensus 42 ~~A~~~~~~Ga~~lHvVDL--g~--~----n~~~i~~i~~~~~~~v~vGGGI-r~-e~v~~~l~aGa~rVvIGS~av~~~ 111 (253)
T TIGR02129 42 YYAKLYKDDGVKGCHVIML--GP--N----NDDAAKEALHAYPGGLQVGGGI-ND-TNAQEWLDEGASHVIVTSWLFTKG 111 (253)
T ss_pred HHHHHHHHcCCCEEEEEEC--CC--C----cHHHHHHHHHhCCCCEEEeCCc-CH-HHHHHHHHcCCCEEEECcHHHhCC
Confidence 4466777889999997 33 41 2 4578888877665554432222 34 57888999999999998754211
Q ss_pred -ccHHHHHHHHHHcC---CcEEEEEC------------CC------CCH-HHHHHhhccCCEEEEEeecCCCCCCccchh
Q 023494 152 -IHLHRTLNQIKDLG---AKAGVVLN------------PA------TSL-SAIECVLDVVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 152 -~~i~~~l~~ik~~G---~k~Glai~------------p~------t~i-e~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
.++.-+-+..+++| +-+++... .- ++. +.++.+.+.+..|++=.++---..|-+.-+
T Consensus 112 ~i~~~~~~~i~~~fG~~~IvvsiD~k~~~~g~~~V~~~GW~~~t~~~~~~e~~~~~~~~~~~il~TdI~rDGtl~G~dle 191 (253)
T TIGR02129 112 KFDLKRLKEIVSLVGKDRLIVDLSCRKTQDGRWIVAMNKWQTITDLELNAETLEELSKYCDEFLIHAADVEGLCKGIDEE 191 (253)
T ss_pred CCCHHHHHHHHHHhCCCCEEEEEEEEEcCCCcEEEEECCCcccCCCChHHHHHHHHHhhCCEEEEeeecccCccccCCHH
Confidence 11444455556665 22333322 11 223 334444334667776555432122334333
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc--CCcEEEEcccccC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA--GANALVAGSAVFG 259 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a--GAD~~VvGSaIf~ 259 (281)
-++++++.. ++++.+.||++ .+++.++.+. |...+|+|++||.
T Consensus 192 ---l~~~l~~~~-----~ipVIASGGv~s~eDi~~l~~~~~g~~~aIvG~Alf~ 237 (253)
T TIGR02129 192 ---LVSKLGEWS-----PIPITYAGGAKSIDDLDLVDELSKGKVDLTIGSALDI 237 (253)
T ss_pred ---HHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHhcCCCCcEEeeehHHH
Confidence 344444432 47899999999 8899888554 5566999999985
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=71.82 Aligned_cols=142 Identities=14% Similarity=0.153 Sum_probs=92.2
Q ss_pred CCCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHHc-CCcEEEEECC
Q 023494 114 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 174 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~-G~k~Glai~p 174 (281)
.+.|+.+.|...+|..|.+ .+.++|+|.|-+|.-+. ....+.+.++++++. +..+.+-++.
T Consensus 53 ~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~ 132 (231)
T cd02801 53 EERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRL 132 (231)
T ss_pred cCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEee
Confidence 4589999999999987754 45678999999995431 122355778888764 4445554443
Q ss_pred CC--C--H-HHHHHhhc-cCCEEEEEeecCCCCCC-ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc
Q 023494 175 AT--S--L-SAIECVLD-VVDLVLIMSVNPGFGGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 246 (281)
Q Consensus 175 ~t--~--i-e~~~~~l~-~vD~IlvmsV~pG~~GQ-~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a 246 (281)
.. . . +.++.+.+ .+|+|.+.. +...| ...+..++.++++++. .+++|.++|||+ ++.+.++++.
T Consensus 133 ~~~~~~~~~~~~~~l~~~Gvd~i~v~~---~~~~~~~~~~~~~~~~~~i~~~-----~~ipvi~~Ggi~~~~d~~~~l~~ 204 (231)
T cd02801 133 GWDDEEETLELAKALEDAGASALTVHG---RTREQRYSGPADWDYIAEIKEA-----VSIPVIANGDIFSLEDALRCLEQ 204 (231)
T ss_pred ccCCchHHHHHHHHHHHhCCCEEEECC---CCHHHcCCCCCCHHHHHHHHhC-----CCCeEEEeCCCCCHHHHHHHHHh
Confidence 32 1 2 22222222 378886643 22222 1123345556666553 357899999995 9999999998
Q ss_pred -CCcEEEEcccccCCCCH
Q 023494 247 -GANALVAGSAVFGAKDY 263 (281)
Q Consensus 247 -GAD~~VvGSaIf~a~dp 263 (281)
|+|.+.+|++++..++.
T Consensus 205 ~gad~V~igr~~l~~P~~ 222 (231)
T cd02801 205 TGVDGVMIGRGALGNPWL 222 (231)
T ss_pred cCCCEEEEcHHhHhCCHH
Confidence 89999999999975543
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >PRK06096 molybdenum transport protein ModD; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=1e-05 Score=75.01 Aligned_cols=141 Identities=12% Similarity=0.167 Sum_probs=95.3
Q ss_pred HHHHHHcCc-CCCCCeeEEEEecChhhHHH-HHHHcCCCEEEEcccccc-------------cccHHHHHHHHHHc--CC
Q 023494 104 PLVVDALRP-VTDLPLDVHLMIVEPEQRVP-DFIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDL--GA 166 (281)
Q Consensus 104 ~~~I~~ir~-~t~~~idaHLmv~dp~~~i~-~~~~aGAd~Itvh~Ea~~-------------~~~i~~~l~~ik~~--G~ 166 (281)
-++++.+|+ .++..+...=|+....+.++ .+..+|....|-..-... .+.+.+.++.+|+. ..
T Consensus 111 ~~~V~~~~~~~~~~~I~~TRKT~Pg~R~l~k~AV~~GGg~~HR~gLsd~vLikdNHi~~~g~~~~i~~av~~~r~~~~~~ 190 (284)
T PRK06096 111 AQMLALLRERYPDGNIACTRKAIPGTRLLATQAVLAAGGLIHRAGCAETILLFANHRHFLHDPQDWSGAINQLRRHAPEK 190 (284)
T ss_pred HHHHHHHHhhCCCcEEEecCcCCCchhHHHHHHHHcCCCcCccCCcchhhhhHHHHHHHhCCcccHHHHHHHHHHhCCCC
Confidence 455666665 36667777777777667665 457888766664332210 11466788888876 45
Q ss_pred cEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH
Q 023494 167 KAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE 245 (281)
Q Consensus 167 k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~ 245 (281)
++-+-+. .++++++.++. +|.|++ ..|.|+.+.+. .+++++.+.++.+++.||||++|++++.+
T Consensus 191 kIeVEv~---tleqa~ea~~agaDiI~L---------Dn~~~e~l~~a---v~~~~~~~~~~~leaSGGI~~~ni~~yA~ 255 (284)
T PRK06096 191 KIVVEAD---TPKEAIAALRAQPDVLQL---------DKFSPQQATEI---AQIAPSLAPHCTLSLAGGINLNTLKNYAD 255 (284)
T ss_pred CEEEECC---CHHHHHHHHHcCCCEEEE---------CCCCHHHHHHH---HHHhhccCCCeEEEEECCCCHHHHHHHHh
Confidence 5555443 67777777764 999987 34666665544 44444334467899999999999999999
Q ss_pred cCCcEEEEcccccCC
Q 023494 246 AGANALVAGSAVFGA 260 (281)
Q Consensus 246 aGAD~~VvGSaIf~a 260 (281)
.|+|++++|+- +.+
T Consensus 256 tGvD~Is~gal-~~a 269 (284)
T PRK06096 256 CGIRLFITSAP-YYA 269 (284)
T ss_pred cCCCEEEECcc-ccC
Confidence 99999988764 543
|
|
| >PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.0001 Score=65.51 Aligned_cols=172 Identities=19% Similarity=0.183 Sum_probs=107.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CC-CCeeEEEEe-cChhhHHHHHHHcCCCEEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TD-LPLDVHLMI-VEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~-~~idaHLmv-~dp~~~i~~~~~aGAd~Itv 144 (281)
.+++ .++.+.+.|+|++=+ .|.|.- ...++..+.|.+. .+ ...+. ..+ .+|....+.+.+.+.|+|-+
T Consensus 11 ~~~e-da~~~~~~Gad~iGf-----I~~~~S~R~V~~~~a~~i~~~~~~~i~~Vg-Vf~~~~~~~i~~~~~~~~~d~vQL 83 (210)
T PRK01222 11 TTPE-DAEAAAELGADAIGF-----VFYPKSPRYVSPEQAAELAAALPPFVKVVG-VFVNASDEEIDEIVETVPLDLLQL 83 (210)
T ss_pred CcHH-HHHHHHHcCCCEEEE-----ccCCCCCCcCCHHHHHHHHHhCCCCCCEEE-EEeCCCHHHHHHHHHhcCCCEEEE
Confidence 3444 577788899998744 233432 3466777777664 22 33333 344 45566667778899999999
Q ss_pred cccccccccHHHHHHHHHH-cCCcEEEEECCCC--CHHHHHHhhccCCEEEEEeecC--CCCCCccchhHHHHHHHHHHH
Q 023494 145 HCEQSSTIHLHRTLNQIKD-LGAKAGVVLNPAT--SLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik~-~G~k~Glai~p~t--~ie~~~~~l~~vD~IlvmsV~p--G~~GQ~f~~~~l~kI~~lr~l 219 (281)
|... + .+.++.+|+ .++++.-++.... .+....++.+.+|++++=+..| |-.|..|.-..+. +++
T Consensus 84 Hg~e----~-~~~~~~l~~~~~~~iik~i~v~~~~~l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~-----~~~ 153 (210)
T PRK01222 84 HGDE----T-PEFCRQLKRRYGLPVIKALRVRSAGDLEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLP-----AGL 153 (210)
T ss_pred CCCC----C-HHHHHHHHhhcCCcEEEEEecCCHHHHHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhh-----hcc
Confidence 9763 1 234556665 4677766665543 3444455556689998855444 4456666543331 111
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCC---CCHH
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a---~dp~ 264 (281)
..++.+.|||+++|+.++++. +..++=+-|.+=.+ .|+.
T Consensus 154 ------~~p~~LAGGi~peNv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ 196 (210)
T PRK01222 154 ------AKPWILAGGLNPDNVAEAIRQVRPYGVDVSSGVESAPGIKDPE 196 (210)
T ss_pred ------CCCEEEECCCCHHHHHHHHHhcCCCEEEecCceECCCCCcCHH
Confidence 236779999999999998875 77777777776532 4554
|
|
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=98.29 E-value=4.9e-05 Score=70.58 Aligned_cols=155 Identities=19% Similarity=0.197 Sum_probs=99.0
Q ss_pred CCCeeEEEEecChhhHHH---HHHHc--CCCEEEEccccc-----------ccccHHHHHHHHHHc-CCcEEEEECCCC-
Q 023494 115 DLPLDVHLMIVEPEQRVP---DFIKA--GADIVSVHCEQS-----------STIHLHRTLNQIKDL-GAKAGVVLNPAT- 176 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~---~~~~a--GAd~Itvh~Ea~-----------~~~~i~~~l~~ik~~-G~k~Glai~p~t- 176 (281)
+.|+.+.++-.+|+.|.+ .+.++ ++|.+-+-.-+. ..+.+.++++++|+. ++.+.+=+.|+.
T Consensus 90 ~~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~~~~ 169 (300)
T TIGR01037 90 PTPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSPNVT 169 (300)
T ss_pred CCcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCCChh
Confidence 468999999999987754 34444 389998854321 113467788888875 777777777653
Q ss_pred CHHHHHHhhc--cCCEEEEEeecCC------------------CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 177 SLSAIECVLD--VVDLVLIMSVNPG------------------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 177 ~ie~~~~~l~--~vD~IlvmsV~pG------------------~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
....+.+.+. .+|.|.+.....| +.|....|..++.+.++++.. +++|..-|||.
T Consensus 170 ~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~-----~ipvi~~GGI~ 244 (300)
T TIGR01037 170 DITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMV-----DIPIIGVGGIT 244 (300)
T ss_pred hHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcC-----CCCEEEECCCC
Confidence 2233333333 3899876422112 122222333455666665532 47888999995
Q ss_pred -hhcHHHHHHcCCcEEEEcccccCCCCH-HHHHHHHHHhc
Q 023494 237 -PKNAYKVIEAGANALVAGSAVFGAKDY-AEAIKGIKTSK 274 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSaIf~a~dp-~~~~~~l~~~~ 274 (281)
++++.+++++|||.+-+||+++..++. .+..+.+.+.+
T Consensus 245 s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~~~l~~~~ 284 (300)
T TIGR01037 245 SFEDALEFLMAGASAVQVGTAVYYRGFAFKKIIEGLIAFL 284 (300)
T ss_pred CHHHHHHHHHcCCCceeecHHHhcCchHHHHHHHHHHHHH
Confidence 999999999999999999998865543 23334444433
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK04169 geranylgeranylglyceryl phosphate synthase-like protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.6e-05 Score=71.73 Aligned_cols=57 Identities=23% Similarity=0.434 Sum_probs=44.3
Q ss_pred HHHHHHHHHhhhcCCCC-eEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNP-WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~-~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+-++++++.. +. ++.+.|||+ +++++++.++|||.+|+||++.+ ||.+.++++++.+
T Consensus 173 e~I~~v~~~~-----~~~pvivGGGIrs~e~a~~~l~~GAD~VVVGSai~~--d~~~~~~~~~~~~ 231 (232)
T PRK04169 173 EMVKAVKKAL-----DITPLIYGGGIRSPEQARELMAAGADTIVVGNIIEE--DPKKTVKAIKKAI 231 (232)
T ss_pred HHHHHHHHhc-----CCCcEEEECCCCCHHHHHHHHHhCCCEEEEChHHhh--CHHHHHHHHHhhc
Confidence 3445555543 34 789999999 77999999999999999999994 6667777777654
|
|
| >PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.8e-06 Score=76.01 Aligned_cols=93 Identities=12% Similarity=0.234 Sum_probs=67.3
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+. +.++++... .++++.+.+. .+|+|++ + +|.++.+++ +.+++++.+.++++
T Consensus 182 i~~av~~~r~~~~~~~~I~VEv~---tleea~eA~~~GaD~I~L-------D--n~~~e~l~~---av~~~~~~~~~i~l 246 (288)
T PRK07428 182 IGEAITRIRQRIPYPLTIEVETE---TLEQVQEALEYGADIIML-------D--NMPVDLMQQ---AVQLIRQQNPRVKI 246 (288)
T ss_pred HHHHHHHHHHhCCCCCEEEEECC---CHHHHHHHHHcCCCEEEE-------C--CCCHHHHHH---HHHHHHhcCCCeEE
Confidence 67788888875 466777664 4555555554 5999986 1 355555544 34444333446899
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|++++.+.|+|++++|+.+++++
T Consensus 247 eAsGGIt~~ni~~ya~tGvD~Isvgsl~~sa~ 278 (288)
T PRK07428 247 EASGNITLETIRAVAETGVDYISSSAPITRSP 278 (288)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEchhhhCCC
Confidence 99999999999999999999999999988654
|
|
| >cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 | Back alignment and domain information |
|---|
Probab=98.21 E-value=8e-05 Score=70.35 Aligned_cols=195 Identities=24% Similarity=0.297 Sum_probs=124.6
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEe-----eeCc-------------ccccccC---CH-HHHHHcCcC--CCCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDV-----MDGR-------------FVPNITI---GP-LVVDALRPV--TDLP 117 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDI-----mDG~-------------fvpn~~~---G~-~~I~~ir~~--t~~~ 117 (281)
|-++++=+....+.++.+.+.|+..+.+-= -.|+ +.+.+.+ |. .+++.+++. .+.|
T Consensus 51 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~ktit~~~~~gn~~pr~~~~~~~~~~~n~~g~~n~g~~~~~~~l~~~~~~~~p 130 (327)
T cd04738 51 PVGLAAGFDKNAEAIDALLALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADAVAKRLKKRRPRGGP 130 (327)
T ss_pred CCEeCcCCCCCHHHHHHHHHCCCcEEEEeccCCCCCCCCCCCCEEEccCccceeecCCCCCccHHHHHHHHHHhccCCCe
Confidence 445555555556778888888887765530 0111 1111112 22 245666543 3678
Q ss_pred eeEEEEecC-------hhhHHHHHHHcC--CCEEEEcccccc---------cccHHHHHHHHHHc-C-----CcEEEEEC
Q 023494 118 LDVHLMIVE-------PEQRVPDFIKAG--ADIVSVHCEQSS---------TIHLHRTLNQIKDL-G-----AKAGVVLN 173 (281)
Q Consensus 118 idaHLmv~d-------p~~~i~~~~~aG--Ad~Itvh~Ea~~---------~~~i~~~l~~ik~~-G-----~k~Glai~ 173 (281)
+.+-+.-++ +.+|.+.+.+++ ||++-+-.-+.. .+.+.++++++|+. + +.+.+=+.
T Consensus 131 livsi~g~~~~~~~~~~~d~~~~~~~~~~~ad~ielN~scP~~~g~~~~~~~~~~~~iv~av~~~~~~~~~~~Pv~vKl~ 210 (327)
T cd04738 131 LGVNIGKNKDTPLEDAVEDYVIGVRKLGPYADYLVVNVSSPNTPGLRDLQGKEALRELLTAVKEERNKLGKKVPLLVKIA 210 (327)
T ss_pred EEEEEeCCCCCcccccHHHHHHHHHHHHhhCCEEEEECCCCCCCccccccCHHHHHHHHHHHHHHHhhcccCCCeEEEeC
Confidence 888887665 456766655544 899888543210 12466777777764 2 66777788
Q ss_pred CCCCHHHHHHhhc-----cCCEEEEEeecC---------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 174 PATSLSAIECVLD-----VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 174 p~t~ie~~~~~l~-----~vD~IlvmsV~p---------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
|....+.+.++.+ .+|.|.+....+ |++|....+..++.++++++.+. .+++|..-|
T Consensus 211 ~~~~~~~~~~ia~~l~~aGad~I~~~n~~~~~~~~~~~~~~~~~gG~sG~~~~~~~l~~v~~l~~~~~---~~ipIi~~G 287 (327)
T cd04738 211 PDLSDEELEDIADVALEHGVDGIIATNTTISRPGLLRSPLANETGGLSGAPLKERSTEVLRELYKLTG---GKIPIIGVG 287 (327)
T ss_pred CCCCHHHHHHHHHHHHHcCCcEEEEECCcccccccccccccCCCCccCChhhhHHHHHHHHHHHHHhC---CCCcEEEEC
Confidence 8765444444432 379887654211 44555555677888888888763 247898999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. .+.+.+++.+|||.+-+||+++.
T Consensus 288 GI~t~~da~e~l~aGAd~V~vg~~~~~ 314 (327)
T cd04738 288 GISSGEDAYEKIRAGASLVQLYTGLVY 314 (327)
T ss_pred CCCCHHHHHHHHHcCCCHHhccHHHHh
Confidence 995 99999999999999999999874
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors. |
| >PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00016 Score=64.30 Aligned_cols=204 Identities=21% Similarity=0.266 Sum_probs=139.6
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
+.-+++...+.+.|..+....++..+.+|+++ +||. -.++.|+..|+.+++|+=| =--+|+.|. .+
T Consensus 12 ~~alKVIsGLnNFd~~~V~~i~~AA~~ggAt~--vDIA---------adp~LV~~~~~~s~lPICV--SaVep~~f~-~a 77 (242)
T PF04481_consen 12 RRALKVISGLNNFDAESVAAIVKAAEIGGATF--VDIA---------ADPELVKLAKSLSNLPICV--SAVEPELFV-AA 77 (242)
T ss_pred CcchhheeCccccCHHHHHHHHHHHHccCCce--EEec---------CCHHHHHHHHHhCCCCeEe--ecCCHHHHH-HH
Confidence 33467888899999999999999999999997 4654 3578899999888888765 557888665 47
Q ss_pred HHcCCCEEEEccccc--------ccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-----cCCEEEEEeecCC
Q 023494 135 IKAGADIVSVHCEQS--------STIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-----VVDLVLIMSVNPG 199 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~--------~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-----~vD~IlvmsV~pG 199 (281)
.++|||.|-+.-.+. +.+++-++-++-|+. ..-..+.+-.--|++.-.++.. .+|+|. .+-|
T Consensus 78 V~AGAdliEIGNfDsFY~qGr~f~a~eVL~Lt~~tR~LLP~~~LsVTVPHiL~ld~Qv~LA~~L~~~GaDiIQ---TEGg 154 (242)
T PF04481_consen 78 VKAGADLIEIGNFDSFYAQGRRFSAEEVLALTRETRSLLPDITLSVTVPHILPLDQQVQLAEDLVKAGADIIQ---TEGG 154 (242)
T ss_pred HHhCCCEEEecchHHHHhcCCeecHHHHHHHHHHHHHhCCCCceEEecCccccHHHHHHHHHHHHHhCCcEEE---cCCC
Confidence 889999999883211 122344444455543 3334444433335544333322 378885 3545
Q ss_pred CCCCccchhHHHHHHHHHHHhh-----hcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHH---HHHH
Q 023494 200 FGGQSFIESQVKKISDLRRMCL-----EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAI---KGIK 271 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~-----~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~---~~l~ 271 (281)
...+++.+.++..|++...-+. .+..+++|--.-|++.=|++..+.+||.++=+||+|-+-.|..+.+ +.++
T Consensus 155 tss~p~~~g~lglIekaapTLAaay~ISr~v~iPVlcASGlS~vT~PmAiaaGAsGVGVGSavn~Ln~~~aMva~vr~l~ 234 (242)
T PF04481_consen 155 TSSKPTSPGILGLIEKAAPTLAAAYAISRAVSIPVLCASGLSAVTAPMAIAAGASGVGVGSAVNRLNDEVAMVAAVRSLV 234 (242)
T ss_pred CCCCCCCcchHHHHHHHhHHHHHHHHHHhccCCceEeccCcchhhHHHHHHcCCcccchhHHhhhcccHHHHHHHHHHHH
Confidence 5556666666666655432221 2345678888999999999999999999999999999888776544 4444
Q ss_pred HhcC
Q 023494 272 TSKR 275 (281)
Q Consensus 272 ~~~~ 275 (281)
+.+.
T Consensus 235 ~al~ 238 (242)
T PF04481_consen 235 EALS 238 (242)
T ss_pred HHHh
Confidence 4444
|
As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis. |
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=98.15 E-value=7.3e-05 Score=73.68 Aligned_cols=194 Identities=14% Similarity=0.160 Sum_probs=133.6
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||- ++-++ +..+..+.+ +.|+..|-+ .-|.+| |.=..+.++.+|+.++.|+...=.+-||. -+.....+
T Consensus 59 aSPs~G~i~~~~-d~~~~a~~y-~~gA~aiSV-lTe~~~---F~Gs~~~l~~vr~~v~~PvLrKDFiid~~-QI~ea~~~ 131 (454)
T PRK09427 59 ASPSKGLIRDDF-DPAEIARVY-KHYASAISV-LTDEKY---FQGSFDFLPIVRAIVTQPILCKDFIIDPY-QIYLARYY 131 (454)
T ss_pred CCCCCCccCCCC-CHHHHHHHH-HcCCeEEEE-ecCcCc---CCCCHHHHHHHHHhCCCCEEeccccCCHH-HHHHHHHc
Confidence 46764 33332 566666677 677887754 444422 34467778888888788888766677765 35567889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||.|.+-....+.+.+.++++.+++.|+.+-+-++....++ ..++ .++.|.+=..+ ...-... ++.-.++
T Consensus 132 GADavLLI~~~L~~~~l~~l~~~a~~lGl~~lvEvh~~~El~---~al~~~a~iiGiNnRd--L~t~~vd---~~~~~~l 203 (454)
T PRK09427 132 GADAILLMLSVLDDEQYRQLAAVAHSLNMGVLTEVSNEEELE---RAIALGAKVIGINNRN--LRDLSID---LNRTREL 203 (454)
T ss_pred CCCchhHHHHhCCHHHHHHHHHHHHHcCCcEEEEECCHHHHH---HHHhCCCCEEEEeCCC--CccceEC---HHHHHHH
Confidence 999999988765445799999999999999999997444443 3333 46666442221 1111122 3444555
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
..++++ +..+..-+||+ ++.+..+.. |+|.+.+|+++.+++||.+.+++|..
T Consensus 204 ~~~ip~---~~~~vseSGI~t~~d~~~~~~-~~davLiG~~lm~~~d~~~~~~~L~~ 256 (454)
T PRK09427 204 APLIPA---DVIVISESGIYTHAQVRELSP-FANGFLIGSSLMAEDDLELAVRKLIL 256 (454)
T ss_pred HhhCCC---CcEEEEeCCCCCHHHHHHHHh-cCCEEEECHHHcCCCCHHHHHHHHhc
Confidence 666653 34455679998 788888755 79999999999999999999998854
|
|
| >cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.9e-05 Score=71.50 Aligned_cols=169 Identities=22% Similarity=0.205 Sum_probs=106.7
Q ss_pred ceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----c------CCH----HHHHHcCcCCCCCeeEEE
Q 023494 58 IIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----T------IGP----LVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 58 ~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~------~G~----~~I~~ir~~t~~~idaHL 122 (281)
.-+..|+.+. |..++.+.++.+++.|+|+|++.+- .||. . ..+ ++++.+|+.+++|+.+-|
T Consensus 100 ~p~i~si~G~~~~~~~~~~a~~~~~~gad~ielN~s----CP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl 175 (299)
T cd02940 100 KILIASIMCEYNKEDWTELAKLVEEAGADALELNFS----CPHGMPERGMGAAVGQDPELVEEICRWVREAVKIPVIAKL 175 (299)
T ss_pred CeEEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEEC
Confidence 4578999998 8888888888998889999888633 2432 1 112 335555665667877743
Q ss_pred Eec--ChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 123 MIV--EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 123 mv~--dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
--+ +...+++.+.++|+|.|+++--.. + ..++.+....+. .. +---+..-|+
T Consensus 176 ~~~~~~~~~~a~~~~~~Gadgi~~~Nt~~---------------~-~~~id~~~~~~~----~~------~~~~~~~gg~ 229 (299)
T cd02940 176 TPNITDIREIARAAKEGGADGVSAINTVN---------------S-LMGVDLDGTPPA----PG------VEGKTTYGGY 229 (299)
T ss_pred CCCchhHHHHHHHHHHcCCCEEEEecccc---------------c-ccccccccCCcc----cc------ccCCCCcCcc
Confidence 211 122344555666777766552210 0 011111110000 00 0000122367
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|....|..++.|.++++.++ .+++|...|||. .+.+.+++.+|||.+-+||+++.
T Consensus 230 sG~a~~p~~l~~v~~~~~~~~---~~ipIig~GGI~~~~da~~~l~aGA~~V~i~ta~~~ 286 (299)
T cd02940 230 SGPAVKPIALRAVSQIARAPE---PGLPISGIGGIESWEDAAEFLLLGASVVQVCTAVMN 286 (299)
T ss_pred cCCCcchHHHHHHHHHHHhcC---CCCcEEEECCCCCHHHHHHHHHcCCChheEceeecc
Confidence 787778889999999988763 247899999999 88999999999999999999886
|
DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue. |
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=69.39 Aligned_cols=149 Identities=18% Similarity=0.201 Sum_probs=99.7
Q ss_pred HHHHcCcCCCCCeeEEEEecChhhH---HHHHHHcCCCEEEEccccccc----------ccHHHHHHHHHHc-CCcEEEE
Q 023494 106 VVDALRPVTDLPLDVHLMIVEPEQR---VPDFIKAGADIVSVHCEQSST----------IHLHRTLNQIKDL-GAKAGVV 171 (281)
Q Consensus 106 ~I~~ir~~t~~~idaHLmv~dp~~~---i~~~~~aGAd~Itvh~Ea~~~----------~~i~~~l~~ik~~-G~k~Gla 171 (281)
.++.+++..+.|+.+.+.-.++..+ .+.+.++|+|++.+|.-+.+. +...+.++.+++. .+-+.+=
T Consensus 92 ~i~~~~~~~~~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vK 171 (334)
T PRK07565 92 LIRRAKEAVDIPVIASLNGSSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVK 171 (334)
T ss_pred HHHHHHHhcCCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEE
Confidence 3444444457899999988888755 445667899999997532100 1255677888765 5666666
Q ss_pred ECCCC-CHHHHHHhhc--cCCEEEEEeecC---------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 172 LNPAT-SLSAIECVLD--VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 172 i~p~t-~ie~~~~~l~--~vD~IlvmsV~p---------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.|.. .+..+...+. .+|.|.+....+ |++|....|..++.++++++.. +++|..-|
T Consensus 172 l~p~~~~~~~~a~~l~~~G~dgI~~~n~~~~~~~d~~~~~~~~~~glsg~~~~~~al~~v~~~~~~~-----~ipIig~G 246 (334)
T PRK07565 172 LSPYFSNLANMAKRLDAAGADGLVLFNRFYQPDIDLETLEVVPGLVLSTPAELRLPLRWIAILSGRV-----GADLAATT 246 (334)
T ss_pred eCCCchhHHHHHHHHHHcCCCeEEEECCcCCCCcChhhcccccCCCCCCchhhhHHHHHHHHHHhhc-----CCCEEEEC
Confidence 77763 3444444333 388886643211 2234344456666666665543 47888999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. .+.+.+++.+|||.+=+||+++.
T Consensus 247 GI~s~~Da~e~l~aGA~~V~v~t~~~~ 273 (334)
T PRK07565 247 GVHDAEDVIKMLLAGADVVMIASALLR 273 (334)
T ss_pred CCCCHHHHHHHHHcCCCceeeehHHhh
Confidence 998 88999999999999999999886
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00016 Score=65.23 Aligned_cols=192 Identities=19% Similarity=0.220 Sum_probs=119.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
...+.++.+.+.|+++|++--... ..+|.+.-..+.++.+++.. +.++-+ |+.+..+.++.+.++|++.|.+....
T Consensus 20 ~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~--l~~~~~~~i~~a~~~g~~~i~i~~~~ 97 (265)
T cd03174 20 DKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQA--LVRNREKGIERALEAGVDEVRIFDSA 97 (265)
T ss_pred HHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEE--EccCchhhHHHHHhCCcCEEEEEEec
Confidence 344556778889999998832211 11123355667888888753 444444 55444668999999999999998764
Q ss_pred c--------------ccccHHHHHHHHHHcCCcEEEEECCCC----CHHHHHHhhc-----cCCEEEEEeecCCCCCCcc
Q 023494 149 S--------------STIHLHRTLNQIKDLGAKAGVVLNPAT----SLSAIECVLD-----VVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 149 ~--------------~~~~i~~~l~~ik~~G~k~Glai~p~t----~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f 205 (281)
. ..+...+.++.+++.|+.+.+.+...+ +.+.+.++++ .+|.|.+. ...|...
T Consensus 98 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~----Dt~G~~~ 173 (265)
T cd03174 98 SETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLK----DTVGLAT 173 (265)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEec----hhcCCcC
Confidence 2 134567888889999999988764333 3444444433 27777653 2245433
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEec----CCChhcHHHHHHcCCcEEEEc-ccc---cCCCCHHHHHHHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDG----GVGPKNAYKVIEAGANALVAG-SAV---FGAKDYAEAIKGIKT 272 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDG----GI~~e~i~~~~~aGAD~~VvG-SaI---f~a~dp~~~~~~l~~ 272 (281)
..+..+.++.+++..+ +.++.+=+ |....|.-..+++||+.+=.. ..+ .++.+.+..+..++.
T Consensus 174 P~~v~~li~~l~~~~~----~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~~~Gn~~~e~~~~~l~~ 244 (265)
T cd03174 174 PEEVAELVKALREALP----DVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGERAGNAATEDLVAALEG 244 (265)
T ss_pred HHHHHHHHHHHHHhCC----CCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccccccCccHHHHHHHHHh
Confidence 3444556777776653 25677744 888889999999999986322 111 223444555555544
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >COG0135 TrpF Phosphoribosylanthranilate isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.11 E-value=0.00041 Score=61.68 Aligned_cols=173 Identities=25% Similarity=0.340 Sum_probs=114.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCCCEEEEc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVH 145 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGAd~Itvh 145 (281)
.++ +.++.+.+.|+|++=+ .|.|. -...++..+.|.+. ++... |=..++.+... .+.+.+.+.|.|=+|
T Consensus 10 t~~-eda~~a~~~gad~iG~-----If~~~SpR~Vs~~~a~~i~~~v~~~~~-VgVf~n~~~~~i~~i~~~~~ld~VQlH 82 (208)
T COG0135 10 TRL-EDAKAAAKAGADYIGF-----IFVPKSPRYVSPEQAREIASAVPKVKV-VGVFVNESIEEILEIAEELGLDAVQLH 82 (208)
T ss_pred CCH-HHHHHHHHcCCCEEEE-----EEcCCCCCcCCHHHHHHHHHhCCCCCE-EEEECCCCHHHHHHHHHhcCCCEEEEC
Confidence 345 4466777889998744 33342 14467777777665 33343 33455555544 455677889999999
Q ss_pred ccccccccHHHHHHHHHHc-CCcEEEEECCCCC--HHHHHHhhccCCEEEEEeec---CCCCCCccchhHHHHHHHHHHH
Q 023494 146 CEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATS--LSAIECVLDVVDLVLIMSVN---PGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~--ie~~~~~l~~vD~IlvmsV~---pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
.+- ..+.++.+|+. ++++.-+++.... .+....+...+|++++=+-. +|-+||.|.-..+... +
T Consensus 83 G~e-----~~~~~~~l~~~~~~~v~kai~v~~~~~~~~~~~~~~~~d~~LlDa~~~~~~GGtG~~fDW~~l~~~---~-- 152 (208)
T COG0135 83 GDE-----DPEYIDQLKEELGVPVIKAISVSEEGDLELAAREEGPVDAILLDAKVPGLPGGTGQTFDWNLLPKL---R-- 152 (208)
T ss_pred CCC-----CHHHHHHHHhhcCCceEEEEEeCCccchhhhhhccCCccEEEEcCCCCCCCCCCCcEECHHHhccc---c--
Confidence 863 23456666765 4777777665543 55566666679999885543 4667899876665443 1
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHHcCC-cEEEEcccccCC---CCHH
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIEAGA-NALVAGSAVFGA---KDYA 264 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~aGA-D~~VvGSaIf~a---~dp~ 264 (281)
...++...||+|++|+.++++.+. .++=+-|.+=.+ .|+.
T Consensus 153 -----~~~~~~LAGGL~p~NV~~ai~~~~p~gvDvSSGVE~~pG~KD~~ 196 (208)
T COG0135 153 -----LSKPVMLAGGLNPDNVAEAIALGPPYGVDVSSGVESSPGIKDPA 196 (208)
T ss_pred -----ccCCEEEECCCCHHHHHHHHHhcCCceEEeccccccCCCCCCHH
Confidence 123578999999999999999888 777677776433 5665
|
|
| >TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00012 Score=68.83 Aligned_cols=147 Identities=20% Similarity=0.335 Sum_probs=97.6
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------------ccCCHHHHHHcCcCCCCCeeEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------------ITIGPLVVDALRPVTDLPLDVH 121 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------------~~~G~~~I~~ir~~t~~~idaH 121 (281)
+.-+.++|...|+..+.++.+.+.++|+|.|.+-. | .|. ..+-.++++.+|+.+++|+.+.
T Consensus 62 ~~p~i~ql~g~~~~~~~~aa~~~~~~G~d~IelN~--g--cP~~~~~~~~~Gs~l~~~~~~~~ei~~~vr~~~~~pv~vK 137 (319)
T TIGR00737 62 ETPISVQLFGSDPDTMAEAAKINEELGADIIDINM--G--CPVPKITKKGAGSALLRDPDLIGKIVKAVVDAVDIPVTVK 137 (319)
T ss_pred cceEEEEEeCCCHHHHHHHHHHHHhCCCCEEEEEC--C--CCHHHhcCCCccchHhCCHHHHHHHHHHHHhhcCCCEEEE
Confidence 45688999999999999999999999999875531 2 121 1223356677777677787775
Q ss_pred EEe---c---ChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEe
Q 023494 122 LMI---V---EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMS 195 (281)
Q Consensus 122 Lmv---~---dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvms 195 (281)
+-. . +..++++.+.++|+|.+++|... .
T Consensus 138 ir~g~~~~~~~~~~~a~~l~~~G~d~i~vh~r~----------------------------~------------------ 171 (319)
T TIGR00737 138 IRIGWDDAHINAVEAARIAEDAGAQAVTLHGRT----------------------------R------------------ 171 (319)
T ss_pred EEcccCCCcchHHHHHHHHHHhCCCEEEEEccc----------------------------c------------------
Confidence 432 1 12234555666777777776421 0
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH-HcCCcEEEEcccccCCCCH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI-EAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~-~aGAD~~VvGSaIf~a~dp 263 (281)
..|+.|. ..++.++++++.. +++|.+-|||+ .+.+.+++ ..|+|.+.+|++++..+..
T Consensus 172 -~~~~~~~----~~~~~i~~i~~~~-----~ipvi~nGgI~~~~da~~~l~~~gad~VmigR~~l~~P~l 231 (319)
T TIGR00737 172 -AQGYSGE----ANWDIIARVKQAV-----RIPVIGNGDIFSPEDAKAMLETTGCDGVMIGRGALGNPWL 231 (319)
T ss_pred -cccCCCc----hhHHHHHHHHHcC-----CCcEEEeCCCCCHHHHHHHHHhhCCCEEEEChhhhhCChH
Confidence 0122221 2245566666543 36899999998 88999888 6899999999999875543
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P) | Back alignment and domain information |
|---|
Probab=98.08 E-value=3.1e-05 Score=69.75 Aligned_cols=182 Identities=26% Similarity=0.343 Sum_probs=105.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
|-...++.++.+.+.|.|.+-|. |.. .+.++ .+++..+|+.+++|+..+ ..++... --+||.+.|..-
T Consensus 17 dK~~~~~~~~~~~~~gtDai~VG---GS~-~~~~~-d~vv~~ik~~~~lPvilf--Pg~~~~v-----s~~aDail~~sv 84 (230)
T PF01884_consen 17 DKPNPEEALEAACESGTDAIIVG---GSD-TGVTL-DNVVALIKRVTDLPVILF--PGSPSQV-----SPGADAILFPSV 84 (230)
T ss_dssp TSS-HHHHHHHHHCTT-SEEEEE----ST-HCHHH-HHHHHHHHHHSSS-EEEE--TSTCCG-------TTSSEEEEEEE
T ss_pred CCCCcHHHHHHHHhcCCCEEEEC---CCC-Cccch-HHHHHHHHhcCCCCEEEe--CCChhhc-----CcCCCEEEEEEE
Confidence 44567788888889999998773 432 23332 456778888888897764 5554433 257999999843
Q ss_pred cccc------ccHHHHHHHHHHcCCcE----EEEECCCCCHHHHHHhh-------------c------cCCEEEEEeecC
Q 023494 148 QSST------IHLHRTLNQIKDLGAKA----GVVLNPATSLSAIECVL-------------D------VVDLVLIMSVNP 198 (281)
Q Consensus 148 a~~~------~~i~~~l~~ik~~G~k~----Glai~p~t~ie~~~~~l-------------~------~vD~IlvmsV~p 198 (281)
-.+. ..-.+.+..+++.+.++ .+.+||+..+..+-.-- . ...+|.+ +-
T Consensus 85 lNs~n~~~iig~~~~aa~~~~~~~~e~ip~gYivi~~g~~v~~v~~a~pi~~~~~~iaa~~alA~~~~g~~~iYL---Ea 161 (230)
T PF01884_consen 85 LNSRNPYWIIGAQVEAAPLIKKLGLEVIPTGYIVINPGSKVARVTGARPIPLDKPEIAAAAALAAEYLGMPIIYL---EA 161 (230)
T ss_dssp TTBSSTTTTTHHHHHHHHHCHHHHCCEEEEEEEEESTTSHHHHHTTB-----SHHHHHHHHHHHHHHTT-SEEEE---E-
T ss_pred ecCCCcchHhhHHHHHHHHHHhhcceecceEEEEECCCCceEEeecceecCCCcHHHHHHHHHHHHHhCCCEEEE---Ee
Confidence 2111 11234556677777765 36788765442221110 0 0234443 55
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
|-+-..-.| +.+.+.++... +.++.|.|||+ .|.+.++.++|||++|+|.++.+..+.++.++.++
T Consensus 162 GSGa~~~v~---~~v~~~~~~~~----~~~LivGGGIrs~e~A~~~~~aGAD~IVvGn~iee~~~~e~~~~~i~ 228 (230)
T PF01884_consen 162 GSGAYGPVP---EEVIAAVKKLS----DIPLIVGGGIRSPEQAREMAEAGADTIVVGNAIEEDPDLEEALETIK 228 (230)
T ss_dssp -TTSSS-HH---HHHHHHHHHSS----SSEEEEESS--SHHHHHHHHCTTSSEEEESCHHHHHH-HHHHHTHHH
T ss_pred CCCCCCCcc---HHHHHHHHhcC----CccEEEeCCcCCHHHHHHHHHCCCCEEEECCEEEEcchHHHHHHHHh
Confidence 543322222 33444444432 47899999999 88999999999999999999997655566665554
|
This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B. |
| >PRK06801 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0002 Score=66.57 Aligned_cols=185 Identities=11% Similarity=0.117 Sum_probs=116.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcc--cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~f--vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
.|+..+.-.++.+++.+...| +-+-.++. .+ +..-...++.+.+....|+-+||==......++.++++|++.|-+
T Consensus 26 ~n~e~~~avi~AAe~~~~PvI-l~~~~~~~~~~~-~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftSVm~ 103 (286)
T PRK06801 26 LDSHFLRALFAAAKQERSPFI-INIAEVHFKYIS-LESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSSVMF 103 (286)
T ss_pred CCHHHHHHHHHHHHHHCCCEE-EEeCcchhhcCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcEEEE
Confidence 355556667778888877765 44444432 21 111122334444445689999985544445788899999998887
Q ss_pred cccccc-cc---cHHHHHHHHHHcCCcEEEE---E---------C-----CCCCHHHHHHhhc--cCCEEEEEeecCCCC
Q 023494 145 HCEQSS-TI---HLHRTLNQIKDLGAKAGVV---L---------N-----PATSLSAIECVLD--VVDLVLIMSVNPGFG 201 (281)
Q Consensus 145 h~Ea~~-~~---~i~~~l~~ik~~G~k~Gla---i---------~-----p~t~ie~~~~~l~--~vD~IlvmsV~pG~~ 201 (281)
=.-..+ .+ ...++.+.++.+|+.+-.. + . ..|..+...++.+ .+|++.+ ++-+--+
T Consensus 104 D~S~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~~tgvD~LAv-aiGt~Hg 182 (286)
T PRK06801 104 DGSTLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVDRTGIDALAV-AIGNAHG 182 (286)
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHHHHCcCEEEe-ccCCCCC
Confidence 432211 11 2345666688888765211 1 1 1345566777764 5899887 4422111
Q ss_pred CCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 202 GQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-.+.. +-.+++++++++.. ++++..-|| |+.+++++++++|++.+-++|.++.
T Consensus 183 ~y~~~~~l~~e~l~~i~~~~-----~~PLVlHGGSgi~~e~~~~~i~~Gi~KINv~T~~~~ 238 (286)
T PRK06801 183 KYKGEPKLDFARLAAIHQQT-----GLPLVLHGGSGISDADFRRAIELGIHKINFYTGMSQ 238 (286)
T ss_pred CCCCCCCCCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHcCCcEEEehhHHHH
Confidence 11122 24467777777654 368999999 9999999999999999999999985
|
|
| >PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=4e-05 Score=70.82 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=67.0
Q ss_pred cHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 153 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 153 ~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.+.+.++.+|+. ..++-+.+. .+|+..+.++. +|+|++ ++ |.++.+ +++.++++....+..
T Consensus 167 ~i~~~v~~~k~~~p~~~~I~VEv~---tleea~~A~~~GaDiI~L-------Dn--~~~e~l---~~~v~~~~~~~~~~~ 231 (273)
T PRK05848 167 DLKEFIQHARKNIPFTAKIEIECE---SLEEAKNAMNAGADIVMC-------DN--MSVEEI---KEVVAYRNANYPHVL 231 (273)
T ss_pred cHHHHHHHHHHhCCCCceEEEEeC---CHHHHHHHHHcCCCEEEE-------CC--CCHHHH---HHHHHHhhccCCCeE
Confidence 467888888875 255666553 66666666664 898874 23 445544 444444433334578
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+++-||||++|++++.+.|+|++++|+.+.++.
T Consensus 232 ieAsGgIt~~ni~~ya~~GvD~IsvG~l~~sa~ 264 (273)
T PRK05848 232 LEASGNITLENINAYAKSGVDAISSGSLIHQAT 264 (273)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeChhhcCCC
Confidence 999999999999999999999999999988653
|
|
| >TIGR01768 GGGP-family geranylgeranylglyceryl phosphate synthase family protein | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00012 Score=65.77 Aligned_cols=166 Identities=20% Similarity=0.299 Sum_probs=99.1
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccC-C-HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITI-G-PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G-~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
..+.++.+.+.|.|.|-| |+. .+++. . .+.++.+|+.+ +|+.. -..|+... --+||.+.|..--.
T Consensus 16 ~~~~~~~~~~~gtdai~v----GGS-~~vt~~~~~~~v~~ik~~~-lPvil--fp~~~~~i-----~~~aDa~l~~svlN 82 (223)
T TIGR01768 16 ADEIAKAAAESGTDAILI----GGS-QGVTYEKTDTLIEALRRYG-LPIIL--FPSNPTNV-----SRDADALFFPSVLN 82 (223)
T ss_pred cHHHHHHHHhcCCCEEEE----cCC-CcccHHHHHHHHHHHhccC-CCEEE--eCCCcccc-----CcCCCEEEEEEeec
Confidence 346678888899998866 332 22221 2 23578888765 77765 55665433 34799999885321
Q ss_pred c-cccH-----HHHHHHHHHcCCcE----EEEECCCCCHHHHHH-------------hhcc------CCEEEEEeecCC-
Q 023494 150 S-TIHL-----HRTLNQIKDLGAKA----GVVLNPATSLSAIEC-------------VLDV------VDLVLIMSVNPG- 199 (281)
Q Consensus 150 ~-~~~i-----~~~l~~ik~~G~k~----Glai~p~t~ie~~~~-------------~l~~------vD~IlvmsV~pG- 199 (281)
+ ..+. .+.+..+++.+.++ .+.+||+..+..+-. +... ..+|.+ +.|
T Consensus 83 s~~~~~iig~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~~p~~~~~~aa~~~lA~~~~g~~~vYl---E~gs 159 (223)
T TIGR01768 83 SDDPYWIIGAQIEAAPKFKKIGEEIIPEGYIIVNPGGAAARVTKAKPIPYDKEDLAAYAAMAEEMLGMPIIYL---EAGS 159 (223)
T ss_pred CCCchHHHhHHHHHHHHHhhhcceecceEEEEECCCcceeecccccccCCCcHHHHHHHHHHHHHcCCcEEEE---EecC
Confidence 1 1111 23455556666443 356776644322111 1110 122322 433
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
..|++-.++.++++ ++... +.+|.+.|||+ .++++.+.++|||.+|+||.+++.
T Consensus 160 ~~g~~v~~e~i~~v---~~~~~----~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGs~~~~d 214 (223)
T TIGR01768 160 GAPEPVPPELVAEV---KKVLD----KARLFVGGGIRSVEKAREMAEAGADTIVTGNVIEED 214 (223)
T ss_pred CCCCCcCHHHHHHH---HHHcC----CCCEEEecCCCCHHHHHHHHHcCCCEEEECcHHhhC
Confidence 33555556655554 44432 36899999999 899999999999999999999963
|
This model represents a family of sequences including geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The clade of bacterial sequences may have the same function or a closely related function. This model supercedes TIGR00265, which has been retired. |
| >TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=73.11 Aligned_cols=160 Identities=15% Similarity=0.123 Sum_probs=97.4
Q ss_pred cCCHHHH-------HHcCcCCCCCeeEEEEecChh----hHHHHHH-HcCCCEEEEcccccccccHHHHHHHHHHcCCcE
Q 023494 101 TIGPLVV-------DALRPVTDLPLDVHLMIVEPE----QRVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 168 (281)
Q Consensus 101 ~~G~~~I-------~~ir~~t~~~idaHLmv~dp~----~~i~~~~-~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~ 168 (281)
.+|++.+ +.+++. ++++.+|+|..|.. .|.+.++ ..|+|.+|+|.-.. .+.+..+++..++.|..+
T Consensus 66 ~~G~~gi~~l~~~~~~~~~~-g~~VilD~K~~DIpnTv~~~a~a~~~~~g~D~vTvh~~~G-~d~l~~~~~~~~~~~~~v 143 (261)
T TIGR02127 66 RFGSEGFKALEEVIAHARSL-GLPVLADVKRGDIGSTASAYAKAWLGHLHADALTVSPYLG-LDSLRPFLEYARANGAGI 143 (261)
T ss_pred hcCHHHHHHHHHHHHHHHHC-CCeEEEEeeccChHHHHHHHHHHHHhhcCCCEEEECCcCC-HHHHHHHHHHHhhcCCEE
Confidence 7899888 444443 68899999999986 4666666 78999999998653 566778888888888877
Q ss_pred EEEECCCCCH-HHHHHhh-----ccCCEEEEEee----cC---CCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 169 GVVLNPATSL-SAIECVL-----DVVDLVLIMSV----NP---GFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 169 Glai~p~t~i-e~~~~~l-----~~vD~IlvmsV----~p---G~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
++....+.|- ..++... +..+.|.-+.. .+ |..|--- +.+ .+.++++|+.++ +++| +-.|
T Consensus 144 ~VlvlTSnp~~~~lq~~~~~~~~~~~~~V~~~a~~~~~~~~~~g~~GvV~-gAT~p~e~~~iR~~~~----~~~i-l~PG 217 (261)
T TIGR02127 144 FVLVKTSNPGGADLQDLRVSDGRTVYEEVAELAGELNESPGDCSSVGAVV-GATSPGDLLRLRIEMP----TAPF-LVPG 217 (261)
T ss_pred EEEEeCCCCCHHHHhhhhccCCCCHHHHHHHHHHHhccccCcCCceEEEE-CCCCHHHHHHHHHhCC----CCeE-EeCC
Confidence 7766545422 2232210 00111111100 11 1112111 111 344566666653 2444 6777
Q ss_pred CChh-----cHHHHH-HcCCc-EEEEcccccCCCCHHHHHH
Q 023494 235 VGPK-----NAYKVI-EAGAN-ALVAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 235 I~~e-----~i~~~~-~aGAD-~~VvGSaIf~a~dp~~~~~ 268 (281)
|.++ ....+. +.|+| .+|+|+.|+.+.||.++++
T Consensus 218 igaqG~~~~d~~r~~~~~g~~~~ivvgR~I~~a~~p~~a~~ 258 (261)
T TIGR02127 218 FGAQGAEAADLRGLFGADGSGLLINSSRGVLFAGPRSSALV 258 (261)
T ss_pred cCCCCCCHHHHHHHhcccCCCEEEEcCHHHhcCCChHHHHH
Confidence 7743 344322 36888 8999999999999977654
|
This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme. |
| >PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 | Back alignment and domain information |
|---|
Probab=98.04 E-value=1.5e-05 Score=68.73 Aligned_cols=93 Identities=17% Similarity=0.274 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcC--C-cEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG--A-KAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G--~-k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+.- . ++.+.. . ..+.+++.++ .+|.|++ ..|.|+.+ +++.+.+...+.++.|
T Consensus 66 i~~av~~~~~~~~~~~~I~VEv--~-~~ee~~ea~~~g~d~I~l---------D~~~~~~~---~~~v~~l~~~~~~v~i 130 (169)
T PF01729_consen 66 IEEAVKAARQAAPEKKKIEVEV--E-NLEEAEEALEAGADIIML---------DNMSPEDL---KEAVEELRELNPRVKI 130 (169)
T ss_dssp HHHHHHHHHHHSTTTSEEEEEE--S-SHHHHHHHHHTT-SEEEE---------ES-CHHHH---HHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHHhCCCCceEEEEc--C-CHHHHHHHHHhCCCEEEe---------cCcCHHHH---HHHHHHHhhcCCcEEE
Confidence 667788888752 2 344444 3 3566666555 5899876 12445444 4444444444556899
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|+.++.+.|+|++.+|+.+.+++
T Consensus 131 e~SGGI~~~ni~~ya~~gvD~isvg~~~~~a~ 162 (169)
T PF01729_consen 131 EASGGITLENIAEYAKTGVDVISVGSLTHSAP 162 (169)
T ss_dssp EEESSSSTTTHHHHHHTT-SEEEECHHHHSBE
T ss_pred EEECCCCHHHHHHHHhcCCCEEEcChhhcCCc
Confidence 99999999999999999999999999887653
|
4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D .... |
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=98.04 E-value=9.1e-05 Score=65.72 Aligned_cols=165 Identities=22% Similarity=0.224 Sum_probs=96.7
Q ss_pred cCccCH---HHHHHHHHHcCCCeEEEEeeeCcccccccC--CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 67 ANFAKL---GEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 67 ~D~~~l---~~~l~~l~~~G~d~iHiDImDG~fvpn~~~--G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+|+.+. ++.++.+.+.|.|.|.+. |+ .+++. =.++++.+|+.+++|+.+ ...|+... --+||.
T Consensus 5 iDP~k~e~~~~ia~~v~~~gtDaI~VG---GS--~gvt~~~~~~~v~~ik~~~~lPvil--fp~~~~~i-----~~~aD~ 72 (205)
T TIGR01769 5 IDPEKSDEIEKIAKNAKDAGTDAIMVG---GS--LGIVESNLDQTVKKIKKITNLPVIL--FPGNVNGL-----SRYADA 72 (205)
T ss_pred cCCCcHHHHHHHHHHHHhcCCCEEEEc---Cc--CCCCHHHHHHHHHHHHhhcCCCEEE--ECCCcccc-----CcCCCE
Confidence 466664 233337788999998774 22 11211 123578889888888876 45554422 347999
Q ss_pred EEEcccccc-ccc--HHH---HHHHHHHcCCcE----EEEECCC--------------CCHHHHHHhhcc-----CCEEE
Q 023494 142 VSVHCEQSS-TIH--LHR---TLNQIKDLGAKA----GVVLNPA--------------TSLSAIECVLDV-----VDLVL 192 (281)
Q Consensus 142 Itvh~Ea~~-~~~--i~~---~l~~ik~~G~k~----Glai~p~--------------t~ie~~~~~l~~-----vD~Il 192 (281)
+.|..--.+ ..+ +.. .+-.+|+.|.++ .+.+||+ .+.|....|... .++|.
T Consensus 73 ~~~~sllns~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~ 152 (205)
T TIGR01769 73 VFFMSLLNSADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVY 152 (205)
T ss_pred EEEEEeecCCCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEE
Confidence 998853211 111 122 222337777643 3445533 344555555432 45554
Q ss_pred EEeec-CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 193 IMSVN-PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 193 vmsV~-pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
+ .. -|+ +..-. .+.++++|+.. +.++.|.|||+ +++++++.++|||.+|+|
T Consensus 153 L--e~~sGa-~~~v~---~e~i~~Vk~~~-----~~Pv~vGGGIrs~e~a~~l~~~GAD~VVVG 205 (205)
T TIGR01769 153 L--EAGSGA-SYPVN---PETISLVKKAS-----GIPLIVGGGIRSPEIAYEIVLAGADAIVTG 205 (205)
T ss_pred E--EcCCCC-CCCCC---HHHHHHHHHhh-----CCCEEEeCCCCCHHHHHHHHHcCCCEEEeC
Confidence 4 22 233 22222 44455555554 36899999996 899999999999999998
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK05286 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00018 Score=68.52 Aligned_cols=210 Identities=21% Similarity=0.275 Sum_probs=130.4
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEe-----ee-------------CcccccccC---CHH-HHHHcCcC-CCCCe
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDV-----MD-------------GRFVPNITI---GPL-VVDALRPV-TDLPL 118 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDI-----mD-------------G~fvpn~~~---G~~-~I~~ir~~-t~~~i 118 (281)
|-++|+=+..-.+.++.+.+.|...+.+-= -. ..+.+.+.+ |.+ +++.+++. .+.|+
T Consensus 61 Pi~~AsG~~~~~~~~~~~~~~G~Gavv~ktvt~~p~~gn~~pr~~~~~~~~~~~N~~gl~n~g~~~~~~~l~~~~~~~pv 140 (344)
T PRK05286 61 PVGLAAGFDKNGEAIDALGALGFGFVEVGTVTPRPQPGNPKPRLFRLPEDEALINRMGFNNDGADALAERLKKAYRGIPL 140 (344)
T ss_pred CCEECCCCCCChHHHHHHHHcCCCEEEeCCcCCCCCCCCCCCCEEecccccccccCCCCCCHhHHHHHHHHHHhcCCCcE
Confidence 555666566666888888888888776520 01 122222333 233 45556553 46788
Q ss_pred eEEEEec-------ChhhHHHHHHHcC--CCEEEEccccc---------ccccHHHHHHHHHHc-C-----CcEEEEECC
Q 023494 119 DVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------STIHLHRTLNQIKDL-G-----AKAGVVLNP 174 (281)
Q Consensus 119 daHLmv~-------dp~~~i~~~~~aG--Ad~Itvh~Ea~---------~~~~i~~~l~~ik~~-G-----~k~Glai~p 174 (281)
.+-+.-+ .+.+|.+.+.+++ ||++-+-.-+. ..+.+.++++++|+. + +-+.+=+.|
T Consensus 141 ivsI~~~~~~~~~~~~~d~~~~~~~~~~~ad~lelN~scP~~~g~~~~~~~~~~~eiv~aVr~~~~~~~~~~PV~vKlsp 220 (344)
T PRK05286 141 GINIGKNKDTPLEDAVDDYLICLEKLYPYADYFTVNISSPNTPGLRDLQYGEALDELLAALKEAQAELHGYVPLLVKIAP 220 (344)
T ss_pred EEEEecCCCCCcccCHHHHHHHHHHHHhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHhccccCCceEEEeCC
Confidence 8888654 3456776665555 99988764321 012466788888874 4 678888888
Q ss_pred CCCHHHHHHhhc-----cCCEEEEEeecC---------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 175 ATSLSAIECVLD-----VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 175 ~t~ie~~~~~l~-----~vD~IlvmsV~p---------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
+...+.+.++.+ .+|.|.+....+ |+.|....+..++.++++++... .+++|..-||
T Consensus 221 ~~~~~~~~~ia~~l~~~Gadgi~~~nt~~~~~~~~~~~~~~~~gg~SG~~~~~~~l~~v~~l~~~~~---~~ipIig~GG 297 (344)
T PRK05286 221 DLSDEELDDIADLALEHGIDGVIATNTTLSRDGLKGLPNADEAGGLSGRPLFERSTEVIRRLYKELG---GRLPIIGVGG 297 (344)
T ss_pred CCCHHHHHHHHHHHHHhCCcEEEEeCCccccccccccccCCCCCCcccHHHHHHHHHHHHHHHHHhC---CCCCEEEECC
Confidence 866544444332 378887754321 22333333556777777776542 2478889999
Q ss_pred CC-hhcHHHHHHcCCcEEEEcccccC-CCCH-HHHHHHHHHhc
Q 023494 235 VG-PKNAYKVIEAGANALVAGSAVFG-AKDY-AEAIKGIKTSK 274 (281)
Q Consensus 235 I~-~e~i~~~~~aGAD~~VvGSaIf~-a~dp-~~~~~~l~~~~ 274 (281)
|. .+.+.+++.+|||.+-+||+++. .++. .+..+.|.+.+
T Consensus 298 I~s~eda~e~l~aGAd~V~v~~~~~~~gP~~~~~i~~~L~~~l 340 (344)
T PRK05286 298 IDSAEDAYEKIRAGASLVQIYSGLIYEGPGLVKEIVRGLARLL 340 (344)
T ss_pred CCCHHHHHHHHHcCCCHHHHHHHHHHhCchHHHHHHHHHHHHH
Confidence 99 88999999999999999999864 2433 23334444443
|
|
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0002 Score=68.94 Aligned_cols=133 Identities=21% Similarity=0.294 Sum_probs=84.4
Q ss_pred hhHHHHHHHcCCCEEEEccccc-----ccc-cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC
Q 023494 128 EQRVPDFIKAGADIVSVHCEQS-----STI-HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF 200 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~-----~~~-~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~ 200 (281)
.++++.+.++|+|.+++|.-.. ... ++..+.+.+++.++.+.. ..-...+..+.+++ .+|.|.+ ...||.
T Consensus 144 ~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~~ipVIa--G~V~t~e~A~~l~~aGAD~V~V-G~G~Gs 220 (368)
T PRK08649 144 QELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYELDVPVIV--GGCVTYTTALHLMRTGAAGVLV-GIGPGA 220 (368)
T ss_pred HHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEE-CCCCCc
Confidence 4567788999999999996310 011 467778888888777633 12234555566555 5999966 566652
Q ss_pred --CCCcc----chhHHHHHHHHHH----Hhhh-cCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 201 --GGQSF----IESQVKKISDLRR----MCLE-KGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 201 --~GQ~f----~~~~l~kI~~lr~----l~~~-~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
..... .| .+.-|.+..+ ++.+ .+.+++|..||||. ...+.+.+.+|||.+.+||.+... |.|.
T Consensus 221 ~~~t~~~~g~g~p-~~~ai~~~~~a~~~~l~~~~~~~vpVIAdGGI~~~~diakAlalGAd~Vm~Gs~fa~t~Espg 296 (368)
T PRK08649 221 ACTSRGVLGIGVP-MATAIADVAAARRDYLDETGGRYVHVIADGGIGTSGDIAKAIACGADAVMLGSPLARAAEAPG 296 (368)
T ss_pred CCCCcccCCCCcC-HHHHHHHHHHHHHHhhhhhcCCCCeEEEeCCCCCHHHHHHHHHcCCCeecccchhcccccCCC
Confidence 11111 12 2223333322 2211 12257899999998 779999999999999999998863 4443
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00017 Score=69.37 Aligned_cols=131 Identities=20% Similarity=0.243 Sum_probs=82.6
Q ss_pred ChhhHHHHHHHcCCCEEEEcccc------cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecC
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP 198 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea------~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~p 198 (281)
+..++.+.+.++|+|.|++|.-. ....++..+.+.+++.++.+.. ..-...+...++++ .+|.|++. +-
T Consensus 143 ~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~~~IPVI~--G~V~t~e~A~~~~~aGaDgV~~G--~g 218 (369)
T TIGR01304 143 NAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGELDVPVIA--GGVNDYTTALHLMRTGAAGVIVG--PG 218 (369)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHHCCCCEEE--eCCCCHHHHHHHHHcCCCEEEEC--CC
Confidence 44467788899999999999421 0123466677777778776643 22345566666665 59998732 11
Q ss_pred CC-CCCcc----ch--hHHHHHHHHH-HHhhhcC-CCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 199 GF-GGQSF----IE--SQVKKISDLR-RMCLEKG-VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 199 G~-~GQ~f----~~--~~l~kI~~lr-~l~~~~~-~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|. ..... .| ..+..+...+ +++++.+ ..++|..||||. .+.+.+.+.+|||.+.+|+.+...
T Consensus 219 g~~~~~~~lg~~~p~~~ai~d~~~a~~~~~~e~g~r~vpVIAdGGI~tg~di~kAlAlGAdaV~iGt~~a~a 290 (369)
T TIGR01304 219 GANTTRLVLGIEVPMATAIADVAAARRDYLDETGGRYVHVIADGGIETSGDLVKAIACGADAVVLGSPLARA 290 (369)
T ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHcCCCEeeeHHHHHhh
Confidence 11 11111 22 1233333332 2333333 247888999999 779999999999999999998864
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00014 Score=65.11 Aligned_cols=172 Identities=16% Similarity=0.146 Sum_probs=99.8
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH--cCCCE
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK--AGADI 141 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~--aGAd~ 141 (281)
.+..|+..+. +.+.+.|+|++|+==.|+. ....-..+++++|.+.+ |+.+.==+.+.+ .++.+.. .||+.
T Consensus 33 ~~~~dP~~~a---~~~~~~g~~~l~ivDLd~~--~~~~~n~~~i~~i~~~~--~v~vgGGirs~e-~~~~~~~~l~~a~r 104 (221)
T TIGR00734 33 RLSSSPDDAA---KVIEEIGARFIYIADLDRI--VGLGDNFSLLSKLSKRV--ELIADCGVRSPE-DLETLPFTLEFASR 104 (221)
T ss_pred ecCCCHHHHH---HHHHHcCCCEEEEEEcccc--cCCcchHHHHHHHHhhC--cEEEcCccCCHH-HHHHHHhhhccceE
Confidence 4456665554 4555789999998555663 23344567888887653 333322233333 2334422 36999
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEECCCC--------CHHHHHHhhcc--CCEEEEEeecC-CCCCCccchhHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT--------SLSAIECVLDV--VDLVLIMSVNP-GFGGQSFIESQV 210 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t--------~ie~~~~~l~~--vD~IlvmsV~p-G~~GQ~f~~~~l 210 (281)
|.+.-++ .++++ +++.+ ..-+++...... ..+.+.+++.. + .++++.+.- |. .+.+. +
T Consensus 105 vvigT~a--~~~p~-~l~~~---~~vvslD~~~g~v~~~g~~~~~~~~~~~~~~~g~-~ii~tdI~~dGt-~~G~d---~ 173 (221)
T TIGR00734 105 VVVATET--LDITE-LLREC---YTVVSLDFKEKFLDASGLFESLEEVRDFLNSFDY-GLIVLDIHSVGT-MKGPN---L 173 (221)
T ss_pred EeecChh--hCCHH-HHHHh---hhEEEEEeECCccccccccccHHHHHHHHHhcCC-EEEEEECCcccc-CCCCC---H
Confidence 9998885 34443 23222 234555543211 12222222221 3 455565543 32 22232 4
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+-++++++.. +.++.+.|||+ ++.+.++.+.|||.+++|++++.
T Consensus 174 eli~~i~~~~-----~~pvia~GGi~s~ed~~~l~~~Ga~~vivgsal~~ 218 (221)
T TIGR00734 174 ELLTKTLELS-----EHPVMLGGGISGVEDLELLKEMGVSAVLVATAVHK 218 (221)
T ss_pred HHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHCCCCEEEEhHHhhC
Confidence 4455555543 36889999999 88999999999999999999875
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00019 Score=66.86 Aligned_cols=143 Identities=12% Similarity=0.126 Sum_probs=95.4
Q ss_pred HHcCcCCCCCeeEEEEec-Chhh---HHHHHHHcCCCEEEEcccccccc---cHHHHHHHHHHc-CCcEEEEECCCCCHH
Q 023494 108 DALRPVTDLPLDVHLMIV-EPEQ---RVPDFIKAGADIVSVHCEQSSTI---HLHRTLNQIKDL-GAKAGVVLNPATSLS 179 (281)
Q Consensus 108 ~~ir~~t~~~idaHLmv~-dp~~---~i~~~~~aGAd~Itvh~Ea~~~~---~i~~~l~~ik~~-G~k~Glai~p~t~ie 179 (281)
+.+++..+.|+-+.|... +|.. .++.+.+.|++.+.+|..+. .. ...+.++++++. ++.+.+-.. .+.+
T Consensus 108 ~~i~~~~~~~~~~ql~~~~~~~~~~~~i~~~~~~g~~~i~l~~~~p-~~~~~~~~~~i~~l~~~~~~pvivK~v--~s~~ 184 (299)
T cd02809 108 EEVAAAAPGPRWFQLYVPRDREITEDLLRRAEAAGYKALVLTVDTP-VLGRRLTWDDLAWLRSQWKGPLILKGI--LTPE 184 (299)
T ss_pred HHHHHhcCCCeEEEEeecCCHHHHHHHHHHHHHcCCCEEEEecCCC-CCCCCCCHHHHHHHHHhcCCCEEEeec--CCHH
Confidence 344443347889998875 7764 35556788999999998752 20 112567777775 666555421 3455
Q ss_pred HHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccc
Q 023494 180 AIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 180 ~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaI 257 (281)
..+...+ .+|.|.+.. +.|. ...+.+.+++-|.++++.+.. +++|.++|||. ...+.+++..|||.+-+|+.+
T Consensus 185 ~a~~a~~~G~d~I~v~~-~gG~-~~~~g~~~~~~l~~i~~~~~~---~ipvia~GGI~~~~d~~kal~lGAd~V~ig~~~ 259 (299)
T cd02809 185 DALRAVDAGADGIVVSN-HGGR-QLDGAPATIDALPEIVAAVGG---RIEVLLDGGIRRGTDVLKALALGADAVLIGRPF 259 (299)
T ss_pred HHHHHHHCCCCEEEEcC-CCCC-CCCCCcCHHHHHHHHHHHhcC---CCeEEEeCCCCCHHHHHHHHHcCCCEEEEcHHH
Confidence 5665555 489987642 2221 112345667777777776532 47899999997 778888899999999999886
Q ss_pred c
Q 023494 258 F 258 (281)
Q Consensus 258 f 258 (281)
+
T Consensus 260 l 260 (299)
T cd02809 260 L 260 (299)
T ss_pred H
Confidence 5
|
This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. |
| >PF00697 PRAI: N-(5'phosphoribosyl)anthranilate (PRA) isomerase; InterPro: IPR001240 Indole-3-glycerol phosphate synthase (IGPS) (see IPR001468 from INTERPRO) catalyzes the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00012 Score=64.34 Aligned_cols=166 Identities=18% Similarity=0.255 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeEEEEecChhh-HHHHHHHcCCCEEEEcccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~idaHLmv~dp~~-~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+.++.+.+.|+|++=+- |.|+ -...++..++|.+..... -|=++++.+.. ..+.+.+++.|+|-+|...
T Consensus 10 ~da~~~~~~g~d~~Gfi-----~~~~S~R~v~~~~a~~l~~~~~~~-~VgVf~~~~~~~I~~~~~~~~ld~vQLHG~e-- 81 (197)
T PF00697_consen 10 EDARLAAELGADYLGFI-----FYPKSPRYVSPDQARELVSAVPPK-IVGVFVNQSPEEILEIVEELGLDVVQLHGDE-- 81 (197)
T ss_dssp HHHHHHHHHTSSEEEEE-------TTCTTB--HHHHHHHHCCSSSS-EEEEESSS-HHHHHHHHHHCTESEEEE-SGG--
T ss_pred HHHHHHHHcCCCEEeee-----cCCCCCCccCHHHHHHHHHhcCCC-EEEEEcCCCHHHHHHHHHHcCCCEEEECCCC--
Confidence 45677778899997552 2333 245778888886653322 44456665544 5666788999999999873
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh--hccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV--LDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~--l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
..++++.++ .++++.-++...........+ ...+|++++= ...|-+|+.|.-+.+.++.+... ..+
T Consensus 82 ---~~e~~~~l~-~~~~vi~~~~v~~~~~~~~~~~~~~~~d~~LlD-~~~GgtG~~~dw~~~~~~~~~~~-------~~p 149 (197)
T PF00697_consen 82 ---SPEYIKLLR-AGLPVIKAIHVDKDIDLLDYLERYESVDYFLLD-SGSGGTGKTFDWSLLKKIVESYS-------PKP 149 (197)
T ss_dssp ----HHHHHHHH-TTSEEEEEEEESSCHSCCHHCHCSTT-SEEEEE-SSSTSSSS---GGGGCCCHHT-G-------TST
T ss_pred ---CHHHHHHhh-cCceEEEEEEeCCccchHHHHHhcccccEEeEc-cCCCcCCcccCHHHhhhhhhhcc-------cCc
Confidence 334555555 577887777766544322222 2235888874 34455688888777666544221 257
Q ss_pred EEEecCCChhcHHHHHH-cCCcEEEEcccccC
Q 023494 229 IEVDGGVGPKNAYKVIE-AGANALVAGSAVFG 259 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~ 259 (281)
+.+.||||++|+.++++ .++..+=+-|.+=.
T Consensus 150 ~iLAGGl~p~NV~~ai~~~~p~gvDvsSGvE~ 181 (197)
T PF00697_consen 150 VILAGGLNPENVREAIRQVRPYGVDVSSGVET 181 (197)
T ss_dssp EEEESS--TTTHHHHHHHC--SEEEESGGGEE
T ss_pred EEEEcCCChHHHHHHHHhcCceEEEeCCcccc
Confidence 88999999999999988 88888888887743
|
In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyzes N-(5-phosphoribosyl)anthranilate isomerase (PRAI) activity, the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (GATase) N-terminal domain (see IPR000991 from INTERPRO). Phosphoribosylanthranilate isomerase (PRAI) is monomeric and labile in most mesophilic microorganisms, but dimeric and stable in the hyperthermophile Thermotoga maritima (tPRAI) []. The comparison to the known 2.0 A structure of PRAI from Escherichia coli (ePRAI) shows that tPRAI has the complete TIM- or (beta alp ha)8-barrel fold, whereas helix alpha5 in ePRAI is replaced by a loop. The subunits of tPRAI associate via the N-terminal faces of their central beta-barrels. Two long, symmetry-related loops that protrude reciprocally into cavities of the other subunit provide for multiple hydrophobic interactions. Moreover, the side chains of the N-terminal methionines and the C-terminal leucines of both subunits are immobilized in a hydrophobic cluster, and the number of salt bridges is increased in tPRAI. These features appear to be mainly responsible for the high thermostability of tPRAI []. ; GO: 0004640 phosphoribosylanthranilate isomerase activity, 0006568 tryptophan metabolic process; PDB: 1V5X_A 1PII_A 1JCM_P 2KZH_A 1LBM_A 1DL3_A 1NSJ_A. |
| >cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.01 E-value=4.2e-05 Score=70.46 Aligned_cols=89 Identities=15% Similarity=0.284 Sum_probs=64.2
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+...++.+|+. +.++|+..+ .++++.+... .+|||++-. |. ++.++++.+..+. ++++
T Consensus 168 i~~~v~~~r~~~~~~~~Igvev~---s~eea~~A~~~gaDyI~ld~---------~~---~e~l~~~~~~~~~---~ipi 229 (268)
T cd01572 168 ITEAVRRARAAAPFTLKIEVEVE---TLEQLKEALEAGADIIMLDN---------MS---PEELREAVALLKG---RVLL 229 (268)
T ss_pred HHHHHHHHHHhCCCCCeEEEEEC---CHHHHHHHHHcCCCEEEECC---------cC---HHHHHHHHHHcCC---CCcE
Confidence 34556677765 567888886 4555555543 599998721 22 3455666655432 4789
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|+.++.++|+|++++|+..+++
T Consensus 230 ~AiGGI~~~ni~~~a~~Gvd~Iav~sl~~~a 260 (268)
T cd01572 230 EASGGITLENIRAYAETGVDYISVGALTHSA 260 (268)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEEeeecCC
Confidence 9999999999999999999999999977754
|
It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00015 Score=70.47 Aligned_cols=132 Identities=22% Similarity=0.359 Sum_probs=85.4
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCCc
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQS 204 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ~ 204 (281)
+.++.+.++|+|.|.+-.-......+.+.++.+|+.--.+-+.. +-. ..+..+.+++ .+|.|.+ +.-||. +++.
T Consensus 156 ~~v~~lv~aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p~~~vi~g~V~-T~e~a~~l~~aGaD~I~v-G~g~Gs~c~tr~ 233 (404)
T PRK06843 156 ERVEELVKAHVDILVIDSAHGHSTRIIELVKKIKTKYPNLDLIAGNIV-TKEAALDLISVGADCLKV-GIGPGSICTTRI 233 (404)
T ss_pred HHHHHHHhcCCCEEEEECCCCCChhHHHHHHHHHhhCCCCcEEEEecC-CHHHHHHHHHcCCCEEEE-CCCCCcCCccee
Confidence 56888999999999975443223456678888887421222322 323 4455555555 5999875 556653 1221
Q ss_pred ---cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 205 ---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 205 ---f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+-.-.+.-+..+++...+ .+.+|.+||||+ ++.+.+.+.+|||.+++||.|.+. +.|.
T Consensus 234 ~~g~g~p~ltai~~v~~~~~~--~~vpVIAdGGI~~~~Di~KALalGA~aVmvGs~~agt~Espg 296 (404)
T PRK06843 234 VAGVGVPQITAICDVYEVCKN--TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGTKESPS 296 (404)
T ss_pred ecCCCCChHHHHHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEcceeeeeecCCC
Confidence 111234445455555433 347899999997 889999999999999999999874 4443
|
|
| >PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.2e-05 Score=70.18 Aligned_cols=89 Identities=11% Similarity=0.193 Sum_probs=64.4
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+. ++++|+..+ ..+++.+.. ..+|||++ + .+-+ +.++++++..+ ..+++
T Consensus 174 ~~~~v~~aR~~~~~~~~Igvsv~---tleea~~A~~~gaDyI~l---D------~~~~---e~l~~~~~~~~---~~i~i 235 (277)
T PRK08072 174 ITKAVTSVREKLGHMVKIEVETE---TEEQVREAVAAGADIIMF---D------NRTP---DEIREFVKLVP---SAIVT 235 (277)
T ss_pred HHHHHHHHHHhCCCCCEEEEEeC---CHHHHHHHHHcCCCEEEE---C------CCCH---HHHHHHHHhcC---CCceE
Confidence 66777788876 467888885 455555554 45999977 1 2434 44555555543 24678
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|++++.++|+|.+++|+-.+++
T Consensus 236 ~AiGGIt~~ni~~~a~~Gvd~IAvg~l~~sa 266 (277)
T PRK08072 236 EASGGITLENLPAYGGTGVDYISLGFLTHSV 266 (277)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEChhhcCC
Confidence 9999999999999999999999999866544
|
|
| >cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.001 Score=61.95 Aligned_cols=142 Identities=17% Similarity=0.211 Sum_probs=97.7
Q ss_pred CCCCeeEEEEecChhhHHHHH---HHc---CCCEEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCC
Q 023494 114 TDLPLDVHLMIVEPEQRVPDF---IKA---GADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~~---~~a---GAd~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t 176 (281)
.+.|+.+.++-. ++.|++.+ .+. |+|++-+-.-+. ..+.+.++++.+++. .+-+.+=|.|.+
T Consensus 90 ~~~pvivsi~g~-~~~~~~~~~~~~~~~~~~ad~ielN~sCPn~~~~~~~~~~~~~~~~i~~~v~~~~~iPv~vKl~p~~ 168 (294)
T cd04741 90 SAKPFFISVTGS-AEDIAAMYKKIAAHQKQFPLAMELNLSCPNVPGKPPPAYDFDATLEYLTAVKAAYSIPVGVKTPPYT 168 (294)
T ss_pred cCCeEEEECCCC-HHHHHHHHHHHHhhccccccEEEEECCCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 467899999888 88776543 343 699998854321 123466778888875 677788899988
Q ss_pred CHHHHHHhhc-------cCCEEEE-------EeecC--------------CCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 177 SLSAIECVLD-------VVDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 177 ~ie~~~~~l~-------~vD~Ilv-------msV~p--------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
+.+.+.++++ .+|.|.. |.+++ |.+|....|..++.++++++..+ .+++
T Consensus 169 ~~~~~~~~a~~l~~~~~G~~gi~~~Nt~~~~~~id~~~~~~~~~~~~~~gG~SG~~i~~~al~~v~~~~~~~~---~~ip 245 (294)
T cd04741 169 DPAQFDTLAEALNAFACPISFITATNTLGNGLVLDPERETVVLKPKTGFGGLAGAYLHPLALGNVRTFRRLLP---SEIQ 245 (294)
T ss_pred CHHHHHHHHHHHhccccCCcEEEEEccCCccccccCCCCCcccCCCCCCCCcCchhhHHHHHHHHHHHHHhcC---CCCC
Confidence 7655555443 3455542 11221 12333346677777888777653 2478
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|..-|||. .+.+.+++.+|||.+=+||+++.
T Consensus 246 Iig~GGI~s~~da~e~l~aGA~~Vqv~ta~~~ 277 (294)
T cd04741 246 IIGVGGVLDGRGAFRMRLAGASAVQVGTALGK 277 (294)
T ss_pred EEEeCCCCCHHHHHHHHHcCCCceeEchhhhh
Confidence 98999998 88999999999999999999885
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >cd02812 PcrB_like PcrB_like proteins | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00014 Score=65.21 Aligned_cols=166 Identities=20% Similarity=0.228 Sum_probs=93.2
Q ss_pred HHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcCCC-CCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc-cc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPVTD-LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TI 152 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~t~-~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~-~~ 152 (281)
.+.+.+.|.|.|-|. |. .+.+ --.++++.+++.++ .|+. |-..++... --|||.+.|+.--.+ ..
T Consensus 18 ~~~~~~~gtdai~vG---GS--~~v~~~~~~~~~~ik~~~~~~Pvi--lfp~~~~~i-----~~~aDa~l~~svlns~n~ 85 (219)
T cd02812 18 AKLAEESGTDAIMVG---GS--DGVSSTLDNVVRLIKRIRRPVPVI--LFPSNPEAV-----SPGADAYLFPSVLNSGDP 85 (219)
T ss_pred HHHHHhcCCCEEEEC---Cc--cchhhhHHHHHHHHHHhcCCCCEE--EeCCCcccc-----CcCCCEEEEEeeecCCCc
Confidence 344555899988663 22 1121 11235666666654 5544 466665533 357999988853211 11
Q ss_pred cH-----HHHHHHHHH--cCCc----EEEEECCCCC------------HHHHHHhhccCCEEEEEeecCCCCCCccchhH
Q 023494 153 HL-----HRTLNQIKD--LGAK----AGVVLNPATS------------LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 153 ~i-----~~~l~~ik~--~G~k----~Glai~p~t~------------ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
+. .+.+..+++ .+.+ ..+.+||+.. .+.+..|....+++.+.-++--++|..-.++.
T Consensus 86 ~~i~g~~~~~~~~~~~~~~~~e~i~~gYiv~~~~~~v~~v~~a~~~~~~e~~~ayA~aae~~g~~ivyLe~SG~~~~~e~ 165 (219)
T cd02812 86 YWIIGAQAEAAPEVGKIIPWLELIPEGYLVLNPDSTVARVTGAKTDLKPEDAAAYALAAEYLGMPIVYLEYSGAYGPPEV 165 (219)
T ss_pred hHHHHHHHHHHHHhccccccccccceEEEEECCCCceeeeeccCcCCCHHHHHHHHHHHHHcCCeEEEeCCCCCcCCHHH
Confidence 11 233444444 3333 2355665533 34444444333333322222225565533444
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++++++... +.++.+.|||+ +|.++++.++|||.+|+||++++.
T Consensus 166 ---I~~v~~~~~----~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai~~~ 210 (219)
T cd02812 166 ---VRAVKKVLG----DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIVEED 210 (219)
T ss_pred ---HHHHHHhcC----CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchhhCC
Confidence 444454431 36899999997 999999999999999999999974
|
One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown. |
| >TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase | Back alignment and domain information |
|---|
Probab=97.96 E-value=5.2e-05 Score=69.78 Aligned_cols=88 Identities=16% Similarity=0.285 Sum_probs=61.5
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+...++.+|+. +.++|+..+ .++++.+... .+|||++- +|-|+. ++++.+.++. ..++
T Consensus 164 ~~~av~~~r~~~~~~~~Igvev~---t~eea~~A~~~gaDyI~ld---------~~~~e~---lk~~v~~~~~---~ipi 225 (265)
T TIGR00078 164 IEKAVKRARAAAPFALKIEVEVE---SLEEAEEAAEAGADIIMLD---------NMKPEE---IKEAVQLLKG---RVLL 225 (265)
T ss_pred HHHHHHHHHHhCCCCCeEEEEeC---CHHHHHHHHHcCCCEEEEC---------CCCHHH---HHHHHHHhcC---CCcE
Confidence 55667777774 477888885 4455555444 59999772 133433 4444444432 2689
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|++++.++|+|.+.+ |+|+.+
T Consensus 226 ~AsGGI~~~ni~~~a~~Gvd~Isv-gait~s 255 (265)
T TIGR00078 226 EASGGITLDNLEEYAETGVDVISS-GALTHS 255 (265)
T ss_pred EEECCCCHHHHHHHHHcCCCEEEe-CHHHcC
Confidence 999999999999999999999999 566653
|
Synonym: quinolinate phosphoribosyltransferase (decarboxylating) |
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00021 Score=66.85 Aligned_cols=127 Identities=17% Similarity=0.204 Sum_probs=83.4
Q ss_pred HHHHcCCCEEEEccccc--------c----c------------ccHHHHHHHHHHc---CCcEEEEECCCC------CHH
Q 023494 133 DFIKAGADIVSVHCEQS--------S----T------------IHLHRTLNQIKDL---GAKAGVVLNPAT------SLS 179 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~----~------------~~i~~~l~~ik~~---G~k~Glai~p~t------~ie 179 (281)
.+.++|+|.|-+|.-.. + . .-+.++++++|+. ++.+++-+++.. +.+
T Consensus 149 ~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g~~~~ 228 (327)
T cd02803 149 RAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGGLTLE 228 (327)
T ss_pred HHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCCCCHH
Confidence 45678999999997420 0 0 0145788888875 567888888753 233
Q ss_pred HHHHhh----c-cCCEEEEEeecCCCCCCccc---------hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH
Q 023494 180 AIECVL----D-VVDLVLIMSVNPGFGGQSFI---------ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244 (281)
Q Consensus 180 ~~~~~l----~-~vD~IlvmsV~pG~~GQ~f~---------~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~ 244 (281)
...+++ + .+|+|-+. .|...+... +..++.++++++.. +++|.+.|||+ ++.+.+++
T Consensus 229 e~~~la~~l~~~G~d~i~vs---~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~Ggi~t~~~a~~~l 300 (327)
T cd02803 229 EAIEIAKALEEAGVDALHVS---GGSYESPPPIIPPPYVPEGYFLELAEKIKKAV-----KIPVIAVGGIRDPEVAEEIL 300 (327)
T ss_pred HHHHHHHHHHHcCCCEEEeC---CCCCcccccccCCCCCCcchhHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHHH
Confidence 333322 2 27888653 333222211 23345566666654 47899999998 99999999
Q ss_pred Hc-CCcEEEEcccccCCCCHHHHH
Q 023494 245 EA-GANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 245 ~a-GAD~~VvGSaIf~a~dp~~~~ 267 (281)
+. |+|.+.+||+++..+|+...+
T Consensus 301 ~~g~aD~V~igR~~ladP~l~~k~ 324 (327)
T cd02803 301 AEGKADLVALGRALLADPDLPNKA 324 (327)
T ss_pred HCCCCCeeeecHHHHhCccHHHHH
Confidence 98 799999999999877655433
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02495 oxidoreductase, acting on the CH-CH group of donors | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.00024 Score=68.62 Aligned_cols=188 Identities=15% Similarity=0.172 Sum_probs=114.3
Q ss_pred ceEeEEEec-cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----------cCCHHHH----HHcCcCCCCCeeEEE
Q 023494 58 IIVSPSILS-ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----------TIGPLVV----DALRPVTDLPLDVHL 122 (281)
Q Consensus 58 ~~i~pSila-~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----------~~G~~~I----~~ir~~t~~~idaHL 122 (281)
.-+..||+. .+..++.+.++.+++.|+|.+++.+- .||. .--++.+ +.+|+.+++|+.+-|
T Consensus 114 ~pvIaSi~~~~s~~~~~~~a~~~e~~GaD~iELNiS----CPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~iPv~vKL 189 (385)
T PLN02495 114 RILIASIMEEYNKDAWEEIIERVEETGVDALEINFS----CPHGMPERKMGAAVGQDCDLLEEVCGWINAKATVPVWAKM 189 (385)
T ss_pred CcEEEEccCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCcCccchhhccCHHHHHHHHHHHHHhhcCceEEEe
Confidence 568889977 57778888888999999999999642 2332 2234555 444666667877744
Q ss_pred Ee--cChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 123 MI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 123 mv--~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
=- .|+....+.+.++|||.|++--- + . -..++.+...++.. .+.. .+..-|.
T Consensus 190 sPn~t~i~~ia~aa~~~Gadgi~liNT------~---~-------~~~~ID~~t~~p~~----~~~~------~~~~GGl 243 (385)
T PLN02495 190 TPNITDITQPARVALKSGCEGVAAINT------I---M-------SVMGINLDTLRPEP----CVEG------YSTPGGY 243 (385)
T ss_pred CCChhhHHHHHHHHHHhCCCEEEEecc------c---C-------cccccccccCcccc----ccCC------CCCCCCc
Confidence 21 12233444455667776664321 0 0 00111111111110 0000 0122346
Q ss_pred CCCccchhHHHHHHHHHHHhhhc-CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-C-CHHHHHHHHHHhcC
Q 023494 201 GGQSFIESQVKKISDLRRMCLEK-GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-K-DYAEAIKGIKTSKR 275 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~-~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~-dp~~~~~~l~~~~~ 275 (281)
.|....|-.+..+.++++.+... ..+++|.--|||. .+.+-+++.+||+.+=++|+++.. . -+.+..+.|.+.++
T Consensus 244 SG~alkpiAl~~v~~i~~~~~~~~~~~ipIiGvGGI~s~~Da~e~i~aGAs~VQv~Ta~~~~Gp~vi~~i~~~L~~~m~ 322 (385)
T PLN02495 244 SSKAVRPIALAKVMAIAKMMKSEFPEDRSLSGIGGVETGGDAAEFILLGADTVQVCTGVMMHGYPLVKNLCAELQDFMK 322 (385)
T ss_pred cchhhhHHHHHHHHHHHHHHhhhccCCCcEEEECCCCCHHHHHHHHHhCCCceeEeeeeeecCcHHHHHHHHHHHHHHH
Confidence 67778899998888888877421 2247898999998 889999999999999999998854 2 23444455555443
|
|
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00053 Score=68.40 Aligned_cols=183 Identities=20% Similarity=0.268 Sum_probs=108.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcCCC------CCeeEEEEec-Chh--hHHHHHHHcC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTD------LPLDVHLMIV-EPE--QRVPDFIKAG 138 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~t~------~~idaHLmv~-dp~--~~i~~~~~aG 138 (281)
..+.+.++.+.+.+..++=+ .| +.++-.++.. ++++. +.+++ ..+.|=.-+. .|. ..++.+.++|
T Consensus 178 ~sl~eAl~lm~e~~i~~LPV--Vd~~g~liGIIT~~-DIl~~-~~~p~a~~D~~GrL~Vgaavg~~~~~~~~~~~l~~ag 253 (495)
T PTZ00314 178 ISLEEANEVLRESRKGKLPI--VNDNGELVALVSRS-DLKKN-RGYPNASLDSNGQLLVGAAISTRPEDIERAAALIEAG 253 (495)
T ss_pred CCHHHHHHHHHHcCCCeEEE--EcCCCcEEEEEEeh-Hhhhc-ccCchhhhccCCCEEEEEEECCCHHHHHHHHHHHHCC
Confidence 47788999999888887543 44 3322222221 22222 22221 2233333443 343 4567789999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc---c-chhHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS---F-IESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~---f-~~~~l~ 211 (281)
+|.|.+-..........+.++++|+.--.+-+....-...+..+.+++ .+|.|-+ ++-||.. .+. + .| .+.
T Consensus 254 ~d~i~id~a~G~s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~v-g~g~Gs~~~t~~~~~~g~p-~~~ 331 (495)
T PTZ00314 254 VDVLVVDSSQGNSIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRI-GMGSGSICITQEVCAVGRP-QAS 331 (495)
T ss_pred CCEEEEecCCCCchHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEE-CCcCCcccccchhccCCCC-hHH
Confidence 999997653211223456888888762223333322234455666665 4998876 6667631 111 1 12 234
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
-|.++++...+. ++++..||||. +..+.+.+.+|||.+.+||.+.+.
T Consensus 332 ai~~~~~~~~~~--~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~~ 379 (495)
T PTZ00314 332 AVYHVARYARER--GVPCIADGGIKNSGDICKALALGADCVMLGSLLAGT 379 (495)
T ss_pred HHHHHHHHHhhc--CCeEEecCCCCCHHHHHHHHHcCCCEEEECchhccc
Confidence 455555555433 47899999998 889999999999999999998763
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00038 Score=69.60 Aligned_cols=184 Identities=21% Similarity=0.263 Sum_probs=106.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcCCCC--C---eeEEEEe-----c--ChhhHHHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTDL--P---LDVHLMI-----V--EPEQRVPDFI 135 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~t~~--~---idaHLmv-----~--dp~~~i~~~~ 135 (281)
..+++.++.+.+.+..++= |+| |.++=.++. -++++.+ .+++. + =.=+|+| . +..+.++.+.
T Consensus 182 ~sL~eAl~~m~~~~~~~LP--VVD~~g~LvGvITr-~DIlk~~-~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~ 257 (505)
T PLN02274 182 IDLEEAEAVLKDSKKGKLP--LVNEDGELVDLVTR-TDVKRVK-GYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLV 257 (505)
T ss_pred CCHHHHHHHHHHcCCCEEE--EEcCCCeEEEEEEH-HHHHHHh-hCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHH
Confidence 4788899999988888753 344 322211111 2233332 22211 0 1123443 1 2234678899
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc-----c-
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS-----F- 205 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~-----f- 205 (281)
++|+|.|.+-.-........+.++++|+.--.+-+.. |-.| .+..+..++ .+|.|.+ +.+||.. .+. .
T Consensus 258 ~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p~~~vi~g~v~t-~e~a~~a~~aGaD~i~v-g~g~G~~~~t~~~~~~g~~ 335 (505)
T PLN02274 258 KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYPELDVIGGNVVT-MYQAQNLIQAGVDGLRV-GMGSGSICTTQEVCAVGRG 335 (505)
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCCCCcEEEecCCC-HHHHHHHHHcCcCEEEE-CCCCCccccCccccccCCC
Confidence 9999999986543211223378899987522222222 3333 444555554 5998866 5566621 110 0
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
....+..+.++.+. .+++|..||||. .+.+.+++.+|||.+.+||+|... +.|.
T Consensus 336 ~~~~i~~~~~~~~~-----~~vpVIadGGI~~~~di~kAla~GA~~V~vGs~~~~t~Esp~ 391 (505)
T PLN02274 336 QATAVYKVASIAAQ-----HGVPVIADGGISNSGHIVKALTLGASTVMMGSFLAGTTEAPG 391 (505)
T ss_pred cccHHHHHHHHHHh-----cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEchhhcccccCCc
Confidence 11234444444432 247899999999 889999999999999999999864 4443
|
|
| >PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1 | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.0003 Score=66.49 Aligned_cols=145 Identities=18% Similarity=0.268 Sum_probs=89.9
Q ss_pred HHHHHcCcCCCCCeeEEEEecChh--hH------------HHHHHHcC--------------CCEEEEcccccccccHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPE--QR------------VPDFIKAG--------------ADIVSVHCEQSSTIHLHR 156 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~--~~------------i~~~~~aG--------------Ad~Itvh~Ea~~~~~i~~ 156 (281)
+.|+++|+.++.|+-+.+++..+. .. .+.+.+.| ++.|+++.-.. ..+
T Consensus 52 ~~i~~~~~~t~~pfgvnl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~G~p----~~~ 127 (330)
T PF03060_consen 52 EEIRKIRALTDKPFGVNLFLPPPDPADEEDAWPKELGNAVLELCIEEGVPFEEQLDVALEAKPDVVSFGFGLP----PPE 127 (330)
T ss_dssp HHHHHHHHH-SS-EEEEEETTSTTHHHH-HHHHHHTHHHHHHHHHHTT-SHHHHHHHHHHS--SEEEEESSSC-----HH
T ss_pred HHHHHHHhhccccccccccccCcccchhhhhhhhhhHHHHHHHHHHhCcccccccccccccceEEEEeecccc----hHH
Confidence 345566777778899988885442 11 23334444 45999987631 367
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
.++.+++.|+++.... +.++..+...+ .+|.|.+-+.+.|- .|... ..++.-+.++++..+ +++.+.||
T Consensus 128 ~i~~l~~~gi~v~~~v---~s~~~A~~a~~~G~D~iv~qG~eAGGH~g~~~-~~~~~L~~~v~~~~~-----iPViaAGG 198 (330)
T PF03060_consen 128 VIERLHAAGIKVIPQV---TSVREARKAAKAGADAIVAQGPEAGGHRGFEV-GSTFSLLPQVRDAVD-----IPVIAAGG 198 (330)
T ss_dssp HHHHHHHTT-EEEEEE---SSHHHHHHHHHTT-SEEEEE-TTSSEE---SS-G-HHHHHHHHHHH-S-----S-EEEESS
T ss_pred HHHHHHHcCCcccccc---CCHHHHHHhhhcCCCEEEEeccccCCCCCccc-cceeeHHHHHhhhcC-----CcEEEecC
Confidence 8999999999888766 36666666655 49999887666542 23111 235666777777653 78999999
Q ss_pred CC-hhcHHHHHHcCCcEEEEccccc-CCCC
Q 023494 235 VG-PKNAYKVIEAGANALVAGSAVF-GAKD 262 (281)
Q Consensus 235 I~-~e~i~~~~~aGAD~~VvGSaIf-~a~d 262 (281)
|. .+.+..+...|||.+.+|+.+. ..|.
T Consensus 199 I~dg~~iaaal~lGA~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 199 IADGRGIAAALALGADGVQMGTRFLATEES 228 (330)
T ss_dssp --SHHHHHHHHHCT-SEEEESHHHHTSTTS
T ss_pred cCCHHHHHHHHHcCCCEeecCCeEEecccc
Confidence 97 6688999999999999998754 4343
|
13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00076 Score=66.46 Aligned_cols=188 Identities=19% Similarity=0.268 Sum_probs=111.2
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC------CCCeeEEEEec-Ch--hhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT------DLPLDVHLMIV-EP--EQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t------~~~idaHLmv~-dp--~~~i~~~~~aGAd 140 (281)
..+.+.++.+.+.+..++=|-=-+|.++-.++. .++++.+. ++ +..+.|.--+. ++ .+.++.+.++|+|
T Consensus 161 ~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~-~DIl~~~~-~~~~~~d~~g~l~V~aav~~~~~~~~r~~~L~~aG~d 238 (450)
T TIGR01302 161 IDLEEALKVLHEHRIEKLPVVDKNGELVGLITM-KDIVKRRK-FPHASKDENGRLIVGAAVGTREFDKERAEALVKAGVD 238 (450)
T ss_pred CcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEh-HHhhhccc-CCcceEeCCCCEEEEEEecCchhHHHHHHHHHHhCCC
Confidence 478888999988888765332122443322222 12232221 11 12233332332 22 2456778999999
Q ss_pred EEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc---cchhHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS---FIESQVKK 212 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~---f~~~~l~k 212 (281)
.|.+-..........+.++++|+. .+.++. ..-...+..+.+++ .+|.|-+ ++.||.. .+. +-.-.+.-
T Consensus 239 ~I~vd~a~g~~~~~~~~i~~i~~~~~~~~vi~--G~v~t~~~a~~l~~aGad~i~v-g~g~G~~~~t~~~~~~g~p~~~~ 315 (450)
T TIGR01302 239 VIVIDSSHGHSIYVIDSIKEIKKTYPDLDIIA--GNVATAEQAKALIDAGADGLRV-GIGPGSICTTRIVAGVGVPQITA 315 (450)
T ss_pred EEEEECCCCcHhHHHHHHHHHHHhCCCCCEEE--EeCCCHHHHHHHHHhCCCEEEE-CCCCCcCCccceecCCCccHHHH
Confidence 998865322234577788888876 333333 22234555666655 5999876 6677721 111 11123344
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+.++++...+ .+.+|..||||. ...+.+++++|||.+.+||.+.+. +.|.
T Consensus 316 i~~~~~~~~~--~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~~e~pg 367 (450)
T TIGR01302 316 VYDVAEYAAQ--SGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGTTESPG 367 (450)
T ss_pred HHHHHHHHhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcCCcCCC
Confidence 5555555433 357899999999 889999999999999999999864 3443
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0015 Score=65.03 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=111.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC-------CCeeEEEEecCh--hhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD-------LPLDVHLMIVEP--EQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~-------~~idaHLmv~dp--~~~i~~~~~aGAd 140 (281)
..+.+.++.+.+.+++.+=|.-.+|.++-.++. .++++.+. .++ .......|..+| .+.++.+.++|+|
T Consensus 165 ~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~-~DLl~~~~-~p~a~~d~~g~l~V~aai~~~~~~~e~a~~L~~agvd 242 (486)
T PRK05567 165 TTLEEALELLHEHRIEKLPVVDDNGRLKGLITV-KDIEKAEE-FPNACKDEQGRLRVGAAVGVGADNEERAEALVEAGVD 242 (486)
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEh-HHhhhhhh-CCCcccccCCCEEEEeecccCcchHHHHHHHHHhCCC
Confidence 467888899998888876543334554433321 23333321 111 112233444445 3457788999999
Q ss_pred EEEEcccccccccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCCc---cchhHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQS---FIESQVKK 212 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ~---f~~~~l~k 212 (281)
.+.+=..........+.++.+++.. ..+.+ ..-...+....+.+ .+|.|-+ +.-||. +++. +-.-.++-
T Consensus 243 vivvD~a~g~~~~vl~~i~~i~~~~p~~~vi~--g~v~t~e~a~~l~~aGad~i~v-g~g~gs~~~~r~~~~~g~p~~~~ 319 (486)
T PRK05567 243 VLVVDTAHGHSEGVLDRVREIKAKYPDVQIIA--GNVATAEAARALIEAGADAVKV-GIGPGSICTTRIVAGVGVPQITA 319 (486)
T ss_pred EEEEECCCCcchhHHHHHHHHHhhCCCCCEEE--eccCCHHHHHHHHHcCCCEEEE-CCCCCccccceeecCCCcCHHHH
Confidence 8876321111234667788888754 33333 22334555666655 4899875 222331 1221 22224455
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+.++++...+ .+++|..||||. +..+.+++.+|||.+.+||+|.+. +.|.
T Consensus 320 ~~~~~~~~~~--~~~~viadGGi~~~~di~kAla~GA~~v~~G~~~a~~~e~pg 371 (486)
T PRK05567 320 IADAAEAAKK--YGIPVIADGGIRYSGDIAKALAAGASAVMLGSMLAGTEEAPG 371 (486)
T ss_pred HHHHHHHhcc--CCCeEEEcCCCCCHHHHHHHHHhCCCEEEECccccccccCCC
Confidence 5555554432 357899999999 789999999999999999999875 3443
|
|
| >PRK13958 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00089 Score=59.39 Aligned_cols=171 Identities=17% Similarity=0.149 Sum_probs=101.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CC-CCeeEEEEecC-hhhHHHHHHHcCCCEEEEc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TD-LPLDVHLMIVE-PEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~-~~idaHLmv~d-p~~~i~~~~~aGAd~Itvh 145 (281)
+. +.++.+.+.|+|++=+ .|.|.- ...++..++|.+. ++ ... |=+.+++ |....+.+.+.|.|.|-+|
T Consensus 10 ~~-eda~~~~~~GaD~iGf-----If~~~SpR~V~~~~a~~i~~~~~~~~~~-VgVf~~~~~~~i~~~~~~~~~d~vQLH 82 (207)
T PRK13958 10 TI-KDVTAASQLPIDAIGF-----IHYEKSKRHQTITQIKKLASAVPNHIDK-VCVVVNPDLTTIEHILSNTSINTIQLH 82 (207)
T ss_pred cH-HHHHHHHHcCCCEEEE-----ecCCCCcccCCHHHHHHHHHhCCCCCCE-EEEEeCCCHHHHHHHHHhCCCCEEEEC
Confidence 44 4466777899998744 233432 3467777777653 22 222 3345554 4455566678999999999
Q ss_pred ccccccccHHHHHHHHHHc--CCcEEEEECCCC-CHHHHHHhhccCCEEEEEeecC--CCCCCccchhHHHHHHHHHHHh
Q 023494 146 CEQSSTIHLHRTLNQIKDL--GAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMC 220 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t-~ie~~~~~l~~vD~IlvmsV~p--G~~GQ~f~~~~l~kI~~lr~l~ 220 (281)
.+.. .+.++.+++. ++++.-++.... .++.+.++...+|++++=+..+ |-.|+.|.-+.+. ++ .
T Consensus 83 G~e~-----~~~~~~l~~~~~~~~iika~~~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~~dw~~~~---~~---~ 151 (207)
T PRK13958 83 GTES-----IDFIQEIKKKYSSIKIIKALPADENIIQNINKYKGFVDLFIIDTPSVSYGGTGQTYDWTILK---HI---K 151 (207)
T ss_pred CCCC-----HHHHHHHhhcCCCceEEEEecccHHHHHHHHHHHhhCCEEEEcCCCCCCCcCCcEeChHHhh---hc---c
Confidence 8731 3456666654 367666666532 2233444545589988865322 3346777544332 21 1
Q ss_pred hhcCCCCeEEEecCCChhcHHHHHH--cCCcEEEEccccc--CCCCHH
Q 023494 221 LEKGVNPWIEVDGGVGPKNAYKVIE--AGANALVAGSAVF--GAKDYA 264 (281)
Q Consensus 221 ~~~~~~~~I~VDGGI~~e~i~~~~~--aGAD~~VvGSaIf--~a~dp~ 264 (281)
..++.+.||+|++|+.++.+ .+...+=+-|.+= +-.|++
T Consensus 152 -----~~p~iLAGGL~peNV~~a~~~~~~p~gVDvsSGVE~~G~KD~~ 194 (207)
T PRK13958 152 -----DIPYLIAGGINSENIQTVEQLKLSHQGYDIASGIETNGRKDIN 194 (207)
T ss_pred -----CCCEEEECCCCHHHHHHHHhcCCCCCEEEcccccCCCCCCCHH
Confidence 13577999999999999764 3556555555553 234654
|
|
| >PRK11815 tRNA-dihydrouridine synthase A; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00033 Score=66.41 Aligned_cols=156 Identities=21% Similarity=0.257 Sum_probs=100.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc-------------cccCCHHHHHHcCcCCCCCeeEEEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP-------------NITIGPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp-------------n~~~G~~~I~~ir~~t~~~idaHLm 123 (281)
+--+...|...|+..+.++.+.+.+.|+|.|.+- =|.-.+ +..+-.++++++|+..+.|+.+-+-
T Consensus 64 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdlN--~gCP~~~v~~~~~Gs~L~~~p~~~~eiv~avr~~v~~pVsvKiR 141 (333)
T PRK11815 64 EHPVALQLGGSDPADLAEAAKLAEDWGYDEINLN--VGCPSDRVQNGRFGACLMAEPELVADCVKAMKDAVSIPVTVKHR 141 (333)
T ss_pred CCcEEEEEeCCCHHHHHHHHHHHHhcCCCEEEEc--CCCCHHHccCCCeeeHHhcCHHHHHHHHHHHHHHcCCceEEEEE
Confidence 4468899999999999999999999999986543 232112 2233346778888777788888664
Q ss_pred e--cC------hhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEe
Q 023494 124 I--VE------PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMS 195 (281)
Q Consensus 124 v--~d------p~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvms 195 (281)
+ .+ ..++++.+.++|+|.+++|.-.. . .+ | .+
T Consensus 142 ~g~~~~~t~~~~~~~~~~l~~aG~d~i~vh~Rt~---~----~~-----g------~~---------------------- 181 (333)
T PRK11815 142 IGIDDQDSYEFLCDFVDTVAEAGCDTFIVHARKA---W----LK-----G------LS---------------------- 181 (333)
T ss_pred eeeCCCcCHHHHHHHHHHHHHhCCCEEEEcCCch---h----hc-----C------CC----------------------
Confidence 4 22 12355667778888888885420 0 00 0 00
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
|..+....|..++.++++++.. .+++|..-|||+ ++.+.++++ |+|.+.+|++++..+.
T Consensus 182 ---~~~~~~~~~~~~~~i~~v~~~~----~~iPVI~nGgI~s~eda~~~l~-~aDgVmIGRa~l~nP~ 241 (333)
T PRK11815 182 ---PKENREIPPLDYDRVYRLKRDF----PHLTIEINGGIKTLEEAKEHLQ-HVDGVMIGRAAYHNPY 241 (333)
T ss_pred ---ccccccCCCcCHHHHHHHHHhC----CCCeEEEECCcCCHHHHHHHHh-cCCEEEEcHHHHhCCH
Confidence 0000011122344555555432 147898999997 889999886 7999999999986543
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0031 Score=59.56 Aligned_cols=139 Identities=16% Similarity=0.206 Sum_probs=91.7
Q ss_pred CCeeEEEEecChhhHHH---HHHHcCCCEEEEcccccc---------------cccHHHHHHHHHHc-CCcEEEEECCCC
Q 023494 116 LPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~~---------------~~~i~~~l~~ik~~-G~k~Glai~p~t 176 (281)
.++.+.|+-+||..+.+ .+.+.|+|.|-+..-+.. .+.+.++++.+++. ++.+++-+..+.
T Consensus 65 ~~~~vQl~g~~~~~~~~aa~~~~~~g~d~IdlN~gCP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vKiR~G~ 144 (321)
T PRK10415 65 GIRTVQIAGSDPKEMADAARINVESGAQIIDINMGCPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLKIRTGW 144 (321)
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCCCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEEEEccc
Confidence 57789999999998744 345789999999876520 12355667777653 566776663221
Q ss_pred -----CHHHHHHhhc--cCCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH-c
Q 023494 177 -----SLSAIECVLD--VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-A 246 (281)
Q Consensus 177 -----~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~-a 246 (281)
....+.+.+. .+|.|.+.+. ...|.+. +..++.++++++.. +++|..-|||. ++.+.++++ .
T Consensus 145 ~~~~~~~~~~a~~le~~G~d~i~vh~r---t~~~~~~G~a~~~~i~~ik~~~-----~iPVI~nGgI~s~~da~~~l~~~ 216 (321)
T PRK10415 145 APEHRNCVEIAQLAEDCGIQALTIHGR---TRACLFNGEAEYDSIRAVKQKV-----SIPVIANGDITDPLKARAVLDYT 216 (321)
T ss_pred cCCcchHHHHHHHHHHhCCCEEEEecC---ccccccCCCcChHHHHHHHHhc-----CCcEEEeCCCCCHHHHHHHHhcc
Confidence 2222333333 3788876533 3223332 23356666666543 47899999995 999999987 6
Q ss_pred CCcEEEEcccccCCCC
Q 023494 247 GANALVAGSAVFGAKD 262 (281)
Q Consensus 247 GAD~~VvGSaIf~a~d 262 (281)
|+|.+.+|++++..+.
T Consensus 217 gadgVmiGR~~l~nP~ 232 (321)
T PRK10415 217 GADALMIGRAAQGRPW 232 (321)
T ss_pred CCCEEEEChHhhcCCh
Confidence 9999999999987554
|
|
| >CHL00162 thiG thiamin biosynthesis protein G; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0032 Score=57.45 Aligned_cols=188 Identities=17% Similarity=0.200 Sum_probs=111.2
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHcC-
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKAG- 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~aG- 138 (281)
-+.+.+...+.++..|++.+-+=+---.+ ....-...+.+.|+. ..++++-+..+ +..++..+++
T Consensus 25 ky~s~~~~~~ai~aSg~evvTvalRR~~~-~~~~~~~~~l~~i~~-----~~~~~LPNTaGc~tA~EAv~~A~laRe~~~ 98 (267)
T CHL00162 25 KYKSLKDAIQSIEASGCEIVTVAIRRLNN-NLLNDNSNLLNGLDW-----NKLWLLPNTAGCQTAEEAIRMAFLGRELAK 98 (267)
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEEEEecc-CcCCCcchHHHhhch-----hccEECCcCcCCCCHHHHHHHHHHHHHHhc
Confidence 34466666677778889887664432211 000112445555542 12345544432 2334445654
Q ss_pred ------CCEEEEccccc---ccccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccCCEEEEE--eecCCCCCCc
Q 023494 139 ------ADIVSVHCEQS---STIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVVDLVLIM--SVNPGFGGQS 204 (281)
Q Consensus 139 ------Ad~Itvh~Ea~---~~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvm--sV~pG~~GQ~ 204 (281)
-|||-+-.-.. -.+++.+++++.+. .|..+---++++ ++ +..-+..+---.|| ....|. ||-
T Consensus 99 ~~~~~~~~wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D-~v--~a~rLed~Gc~aVMPlgsPIGS-g~G 174 (267)
T CHL00162 99 QLGQEDNNFVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINAD-PM--LAKHLEDIGCATVMPLGSPIGS-GQG 174 (267)
T ss_pred cccccCCCeEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCC-HH--HHHHHHHcCCeEEeeccCcccC-CCC
Confidence 67876543210 13456677777664 455554444432 22 33334443333444 344453 444
Q ss_pred c-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 205 F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 205 f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
. .|..++-| ++ +.++++.||+||+ ++++....+.|+|.+-+.|+|++++||.+.++.++..
T Consensus 175 l~n~~~l~~i---~e-----~~~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~A 237 (267)
T CHL00162 175 LQNLLNLQII---IE-----NAKIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLA 237 (267)
T ss_pred CCCHHHHHHH---HH-----cCCCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHH
Confidence 4 45555443 32 2357899999999 8899999999999999999999999999988888864
|
|
| >cd00945 Aldolase_Class_I Class I aldolases | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0009 Score=57.11 Aligned_cols=165 Identities=19% Similarity=0.263 Sum_probs=103.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-C--CCCeeEEEEecC----hh---hHHHHHHHc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-T--DLPLDVHLMIVE----PE---QRVPDFIKA 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t--~~~idaHLmv~d----p~---~~i~~~~~a 137 (281)
|...+++.++.+.+.|++.+-+- ..+++.+++. . +.++.++.-..+ .. +..+.+.++
T Consensus 11 d~~~~~~~~~~~~~~gv~gi~~~-------------g~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~~ 77 (201)
T cd00945 11 TLEDIAKLCDEAIEYGFAAVCVN-------------PGYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAIDL 77 (201)
T ss_pred CHHHHHHHHHHHHHhCCcEEEEC-------------HHHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHHc
Confidence 67788899999999998876441 2667766554 3 367777665554 22 456778899
Q ss_pred CCCEEEEccccc---c--cccHHHHHHHHHHc---CCcEEEEECCCC--CHHHHHHh---h--ccCCEEEEEeecCCCCC
Q 023494 138 GADIVSVHCEQS---S--TIHLHRTLNQIKDL---GAKAGVVLNPAT--SLSAIECV---L--DVVDLVLIMSVNPGFGG 202 (281)
Q Consensus 138 GAd~Itvh~Ea~---~--~~~i~~~l~~ik~~---G~k~Glai~p~t--~ie~~~~~---l--~~vD~IlvmsV~pG~~G 202 (281)
|||.+.++.-.. + .+.+.+.++.+.+. ++.+.+-..|.. +.+.+.++ + ..+|.|= ..+|...
T Consensus 78 Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~~~iK---~~~~~~~ 154 (201)
T cd00945 78 GADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGADFIK---TSTGFGG 154 (201)
T ss_pred CCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCCCEEE---eCCCCCC
Confidence 999999863210 0 13344555556554 777777776653 34444443 1 2356553 2333221
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
..+ .++.++++++..+ .++++.+-||++ ++.+..+..+|++.+++|
T Consensus 155 ~~~---~~~~~~~i~~~~~---~~~~v~~~gg~~~~~~~~~~~~~Ga~g~~~g 201 (201)
T cd00945 155 GGA---TVEDVKLMKEAVG---GRVGVKAAGGIKTLEDALAAIEAGADGIGTS 201 (201)
T ss_pred CCC---CHHHHHHHHHhcc---cCCcEEEECCCCCHHHHHHHHHhccceeecC
Confidence 111 2345555555432 136788999999 888899999999999876
|
The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00079 Score=63.68 Aligned_cols=129 Identities=20% Similarity=0.321 Sum_probs=84.4
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CCc-
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQS- 204 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ~- 204 (281)
.+++.+.++|++.|.+.......+...+.++++|+.+-++-+....-...+..+.+.+ .+|+|.+ ++-||.. ++.
T Consensus 97 ~~~~~l~eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v-g~g~G~~~~t~~~ 175 (325)
T cd00381 97 ERAEALVEAGVDVIVIDSAHGHSVYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKV-GIGPGSICTTRIV 175 (325)
T ss_pred HHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEE-CCCCCcCccccee
Confidence 4677889999999887543222345677899999876223333333345666666666 4999876 3344431 111
Q ss_pred --cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 205 --FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 205 --f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+-.-.+.-|.++.+...+ .+++|..||||. ...+.+.+.+|||.+.+||.+...
T Consensus 176 ~g~g~p~~~~i~~v~~~~~~--~~vpVIA~GGI~~~~di~kAla~GA~~VmiGt~fa~t 232 (325)
T cd00381 176 TGVGVPQATAVADVAAAARD--YGVPVIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 232 (325)
T ss_pred CCCCCCHHHHHHHHHHHHhh--cCCcEEecCCCCCHHHHHHHHHcCCCEEEecchhccc
Confidence 111234445555555443 247888999998 689999999999999999998754
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.0013 Score=60.77 Aligned_cols=171 Identities=18% Similarity=0.154 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccc--c-ccC-CHHHHHHcCcC-CCCCeeEEEEecC-----------hhhHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVP--N-ITI-GPLVVDALRPV-TDLPLDVHLMIVE-----------PEQRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvp--n-~~~-G~~~I~~ir~~-t~~~idaHLmv~d-----------p~~~i~~ 133 (281)
...+..+.|.+.|+++|++-. + +|.- . .+. ..+.++.+++. ++.++-++....+ -...++.
T Consensus 22 ~~~~ia~~L~~~Gv~~iE~G~--~a~~~~~~~~~~~~~~e~i~~~~~~~~~~~l~~~~r~~~~~~~~~~p~~~~~~di~~ 99 (275)
T cd07937 22 DMLPIAEALDEAGFFSLEVWG--GATFDVCMRFLNEDPWERLRELRKAMPNTPLQMLLRGQNLVGYRHYPDDVVELFVEK 99 (275)
T ss_pred HHHHHHHHHHHcCCCEEEccC--CcchhhhccccCCCHHHHHHHHHHhCCCCceehhcccccccCccCCCcHHHHHHHHH
Confidence 334456778889998887731 1 0110 0 122 23556777664 5556666554322 1235778
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC----CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN----PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~----p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
..++|++.|.+-......+.+.+.++.+|+.|.++...+. +.++.+.+.++... +|.|.+- -..|..
T Consensus 100 ~~~~g~~~iri~~~~~~~~~~~~~i~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~----DT~G~~ 175 (275)
T cd07937 100 AAKNGIDIFRIFDALNDVRNLEVAIKAVKKAGKHVEGAICYTGSPVHTLEYYVKLAKELEDMGADSICIK----DMAGLL 175 (275)
T ss_pred HHHcCCCEEEEeecCChHHHHHHHHHHHHHCCCeEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEEc----CCCCCC
Confidence 8899999977764432345678899999999998776543 44566666555432 7777652 334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
...++.+.++.+++.++ .+|++ |-|....|.-..+++||+.+=
T Consensus 176 ~P~~v~~lv~~l~~~~~-----~~l~~H~Hnd~GlA~aN~laA~~aGa~~vd 222 (275)
T cd07937 176 TPYAAYELVKALKKEVG-----LPIHLHTHDTSGLAVATYLAAAEAGVDIVD 222 (275)
T ss_pred CHHHHHHHHHHHHHhCC-----CeEEEEecCCCChHHHHHHHHHHhCCCEEE
Confidence 44555666777766542 56777 889999999999999999764
|
This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex |
| >COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.001 Score=59.72 Aligned_cols=137 Identities=20% Similarity=0.279 Sum_probs=81.5
Q ss_pred eEEEEecChhh------HHHHHHHcCCCEEEEccccc-ccccHHHHHHHHH-HcCCcEEEEECCCCCHHHHHHhhccCCE
Q 023494 119 DVHLMIVEPEQ------RVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIK-DLGAKAGVVLNPATSLSAIECVLDVVDL 190 (281)
Q Consensus 119 daHLmv~dp~~------~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik-~~G~k~Glai~p~t~ie~~~~~l~~vD~ 190 (281)
-.|+---||.+ ..+.+.++|.|.|.+..-.. ..+...+++++|| +.++.+.+.-+-.+ -+.+.+|.
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGGS~gvt~~~~~~~v~~ik~~~~lPvilfP~~~~------~is~~aDa 89 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGGSDGVTEENVDNVVEAIKERTDLPVILFPGSPS------GISPYADA 89 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECCcccccHHHHHHHHHHHHhhcCCCEEEecCChh------ccCccCCe
Confidence 34555555543 56678899999999997652 1245788999999 66666655433211 22334556
Q ss_pred EEEEee-----------------------------------cCCCC-----CCccchhHHHHHHHHHHHhhh--------
Q 023494 191 VLIMSV-----------------------------------NPGFG-----GQSFIESQVKKISDLRRMCLE-------- 222 (281)
Q Consensus 191 IlvmsV-----------------------------------~pG~~-----GQ~f~~~~l~kI~~lr~l~~~-------- 222 (281)
+++|++ +||-+ +-+-+|..-+++.-...+..+
T Consensus 90 vff~svLNS~n~~~i~gaq~~~a~~~~~~~~e~i~~gYiV~~p~~~va~v~~A~~ip~~~~~iaa~y~la~~~~g~~~~Y 169 (240)
T COG1646 90 VFFPSVLNSDNPYWIVGAQVEGAKLVGKLGLEVIPEGYIVVNPDGTVAWVGKAKPIPLDKEDIAAYYALAEKYLGMPVVY 169 (240)
T ss_pred EEEEEEecCCCcccccchhhhhhHHHHhhhheecceEEEEECCCCceeeecccccCCCCcHHHHHHHHHHHHHhCCeEEE
Confidence 665554 33321 111122222222211111110
Q ss_pred ------------------cCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 223 ------------------KGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 223 ------------------~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.-...++-|.|||+ .|+++++.++|||++|+|..+.++.
T Consensus 170 lEagsga~~Pv~~e~v~~v~~~~~LivGGGIrs~E~A~~~a~agAD~IVtG~iiee~~ 227 (240)
T COG1646 170 LEAGSGAGDPVPVEMVSRVLSDTPLIVGGGIRSPEQAREMAEAGADTIVTGTIIEEDP 227 (240)
T ss_pred EEecCCCCCCcCHHHHHHhhccceEEEcCCcCCHHHHHHHHHcCCCEEEECceeecCH
Confidence 00113677999999 8999999999999999999998643
|
|
| >PRK07107 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0012 Score=66.11 Aligned_cols=187 Identities=18% Similarity=0.216 Sum_probs=104.7
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCc---CCC--------CCeeEEEEecChhhHHHHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRP---VTD--------LPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~---~t~--------~~idaHLmv~dp~~~i~~~~~ 136 (281)
..+.++++.+.+.++..+ =|.| |..+ |.-..+.|.+ ++. ..+-+-+=+.+....++.+.+
T Consensus 180 ~~l~eAl~lM~e~~i~~L--PVVD~~g~Lv-----GIIT~~Dilk~~~~P~a~~d~~grL~V~~av~~~~~~~ra~~Lv~ 252 (502)
T PRK07107 180 TTLKEANDIIWDHKLNTL--PIVDKNGNLV-----YLVFRKDYDSHKENPLELLDSSKRYVVGAGINTRDYAERVPALVE 252 (502)
T ss_pred CcHHHHHHHHHHcCCCEE--EEEcCCCeEE-----EEEEhHHHHhcccChhhhhhhccCeeeeeccChhhHHHHHHHHHH
Confidence 478899999999888875 3455 3221 2222222221 221 111122211222245667899
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC----CCCc-cchhH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF----GGQS-FIESQ 209 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~----~GQ~-f~~~~ 209 (281)
+|+|.+.+-..........+.++++|+. +..+-|.-..=...+..+.+++ .+|.|.+ ++.||- ..|. .-.-.
T Consensus 253 aGvd~i~vd~a~g~~~~~~~~i~~ir~~~~~~~~V~aGnV~t~e~a~~li~aGAd~I~v-g~g~Gs~c~tr~~~~~g~~~ 331 (502)
T PRK07107 253 AGADVLCIDSSEGYSEWQKRTLDWIREKYGDSVKVGAGNVVDREGFRYLAEAGADFVKV-GIGGGSICITREQKGIGRGQ 331 (502)
T ss_pred hCCCeEeecCcccccHHHHHHHHHHHHhCCCCceEEeccccCHHHHHHHHHcCCCEEEE-CCCCCcCcccccccCCCccH
Confidence 9999997742111112245778888874 4222222211123445566655 5999877 888881 1111 21112
Q ss_pred HHHHHHHHH----HhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 210 VKKISDLRR----MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 210 l~kI~~lr~----l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
+.-|.+..+ +.++.|.+++|..||||+ ..++-+.+.+|||.+-+||.+-+. +.|.
T Consensus 332 ~~ai~~~~~a~~~~~~~~g~~~~viadgGir~~gdi~KAla~GA~~vm~G~~~ag~~espg 392 (502)
T PRK07107 332 ATALIEVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFARFDESPT 392 (502)
T ss_pred HHHHHHHHHHHHHHHhhcCCcceEEEcCCCCchhHHHHHHHcCCCeeeeChhhhccccCCC
Confidence 333333332 334445557899999999 668889999999999999988753 3443
|
|
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00058 Score=64.66 Aligned_cols=132 Identities=19% Similarity=0.235 Sum_probs=83.6
Q ss_pred CeeEEEEec-Chh--hHHHHHHHcCC--CEEEE-----cccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhh
Q 023494 117 PLDVHLMIV-EPE--QRVPDFIKAGA--DIVSV-----HCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVL 185 (281)
Q Consensus 117 ~idaHLmv~-dp~--~~i~~~~~aGA--d~Itv-----h~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l 185 (281)
.+.|-+=+. +++ +.++.+.++|+ |.|.+ |.+ ...++++++|+.--.+-+.. +.. ..+....+.
T Consensus 85 ~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~-----~~~e~I~~ir~~~p~~~vi~g~V~-t~e~a~~l~ 158 (326)
T PRK05458 85 GLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAHGHSD-----SVINMIQHIKKHLPETFVIAGNVG-TPEAVRELE 158 (326)
T ss_pred ccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCchH-----HHHHHHHHHHhhCCCCeEEEEecC-CHHHHHHHH
Confidence 334444443 343 34667889955 99999 655 36778888887532233333 333 455566665
Q ss_pred c-cCCEEEEEeecCCC-------CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 186 D-VVDLVLIMSVNPGF-------GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 186 ~-~vD~IlvmsV~pG~-------~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
+ .+|.|.+ +..||. .|.......+.-++++++.. +.+|..||||. ...+.+++.+|||.+.+|++
T Consensus 159 ~aGad~i~v-g~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~-----~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG~~ 232 (326)
T PRK05458 159 NAGADATKV-GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGATMVMIGSL 232 (326)
T ss_pred HcCcCEEEE-CCCCCcccccccccCCCCCccHHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHhCCCEEEechh
Confidence 5 4899765 444551 11111111344455555432 36788999999 88999999999999999999
Q ss_pred ccCC
Q 023494 257 VFGA 260 (281)
Q Consensus 257 If~a 260 (281)
+.+.
T Consensus 233 ~~~~ 236 (326)
T PRK05458 233 FAGH 236 (326)
T ss_pred hcCC
Confidence 9853
|
|
| >cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00018 Score=66.47 Aligned_cols=90 Identities=20% Similarity=0.219 Sum_probs=57.7
Q ss_pred HHHHHHHHHc--CCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 155 HRTLNQIKDL--GAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 155 ~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
.+.++.+|+. +.++|+..+ |. +++.+.. ..+|||.+-. |-|..++ ++.+.+.....++++++
T Consensus 171 ~~av~~~R~~~~~~~IgVev~--t~-eea~~A~~~gaD~I~ld~---------~~p~~l~---~~~~~~~~~~~~i~i~A 235 (272)
T cd01573 171 LKALARLRATAPEKKIVVEVD--SL-EEALAAAEAGADILQLDK---------FSPEELA---ELVPKLRSLAPPVLLAA 235 (272)
T ss_pred HHHHHHHHHhCCCCeEEEEcC--CH-HHHHHHHHcCCCEEEECC---------CCHHHHH---HHHHHHhccCCCceEEE
Confidence 5567777765 256677664 33 4444333 4589998732 3333333 33333333223579999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
-||||++|+.++.++|+|+++ .|+|+.+
T Consensus 236 sGGI~~~ni~~~~~~Gvd~I~-vsai~~a 263 (272)
T cd01573 236 AGGINIENAAAYAAAGADILV-TSAPYYA 263 (272)
T ss_pred ECCCCHHHHHHHHHcCCcEEE-EChhhcC
Confidence 999999999999999999994 5555543
|
In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. |
| >PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.71 E-value=0.00021 Score=66.46 Aligned_cols=93 Identities=20% Similarity=0.262 Sum_probs=64.7
Q ss_pred cHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 153 HLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 153 ~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+.+.++.+|+. ..++-+-. + .++++.+.++ .+|.|++ + .|.|+.+ +++.++++..+.++.+
T Consensus 185 ~i~~ai~~~r~~~~~~kIeVEv--~-tl~ea~eal~~gaDiI~L-------D--nm~~e~v---k~av~~~~~~~~~v~i 249 (289)
T PRK07896 185 SVVAALRAVRAAAPDLPCEVEV--D-SLEQLDEVLAEGAELVLL-------D--NFPVWQT---QEAVQRRDARAPTVLL 249 (289)
T ss_pred cHHHHHHHHHHhCCCCCEEEEc--C-CHHHHHHHHHcCCCEEEe-------C--CCCHHHH---HHHHHHHhccCCCEEE
Confidence 356778888864 24544444 3 4555556565 4999986 2 3555554 4444444334456889
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|+.++.+.|+|++++|+-..++
T Consensus 250 eaSGGI~~~ni~~yA~tGvD~Is~galt~sa 280 (289)
T PRK07896 250 ESSGGLTLDTAAAYAETGVDYLAVGALTHSV 280 (289)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 9999999999999999999999999877754
|
|
| >PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00023 Score=65.98 Aligned_cols=90 Identities=14% Similarity=0.281 Sum_probs=63.8
Q ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 154 i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
+...++.+|+.. .++++... | .+++.+.++ .+|||++ + +|.++. ++++.+..+ .+++++
T Consensus 176 v~~av~~~r~~~~~~~I~VEv~--t-leea~eA~~~gaD~I~L-------D--~~~~e~---l~~~v~~~~---~~i~le 237 (277)
T PRK05742 176 IAQAVAAAHRIAPGKPVEVEVE--S-LDELRQALAAGADIVML-------D--ELSLDD---MREAVRLTA---GRAKLE 237 (277)
T ss_pred HHHHHHHHHHhCCCCeEEEEeC--C-HHHHHHHHHcCCCEEEE-------C--CCCHHH---HHHHHHHhC---CCCcEE
Confidence 456677777764 66777764 3 655555554 4899965 1 244444 444444442 257899
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
+-||||++|++++.++|+|++++|+-..++.
T Consensus 238 AsGGIt~~ni~~~a~tGvD~Isvg~lt~s~~ 268 (277)
T PRK05742 238 ASGGINESTLRVIAETGVDYISIGAMTKDVK 268 (277)
T ss_pred EECCCCHHHHHHHHHcCCCEEEEChhhcCCc
Confidence 9999999999999999999999999777653
|
|
| >PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.00026 Score=65.64 Aligned_cols=92 Identities=16% Similarity=0.314 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC--CCCe
Q 023494 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPW 228 (281)
Q Consensus 154 i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~--~~~~ 228 (281)
+.+.++.+|+.. .++.+-.. .++.+.+.++. +|.|++ +. |.|+.+.+ +.+.+.+.+ .++.
T Consensus 169 i~~av~~~r~~~~~~kIeVEv~---~leea~~a~~agaDiI~L-------Dn--~~~e~l~~---~v~~l~~~~~~~~~~ 233 (278)
T PRK08385 169 LEEAIRRAKEFSVYKVVEVEVE---SLEDALKAAKAGADIIML-------DN--MTPEEIRE---VIEALKREGLRERVK 233 (278)
T ss_pred HHHHHHHHHHhCCCCcEEEEeC---CHHHHHHHHHcCcCEEEE-------CC--CCHHHHHH---HHHHHHhcCcCCCEE
Confidence 567888888875 45444443 56666666664 898876 22 45555544 444443322 3578
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++.||||++|+.++.+.|+|++++|+-..++
T Consensus 234 leaSGGI~~~ni~~yA~tGvD~Is~galt~sa 265 (278)
T PRK08385 234 IEVSGGITPENIEEYAKLDVDVISLGALTHSV 265 (278)
T ss_pred EEEECCCCHHHHHHHHHcCCCEEEeChhhcCC
Confidence 99999999999999999999999999877654
|
|
| >TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.0016 Score=61.82 Aligned_cols=195 Identities=23% Similarity=0.288 Sum_probs=122.7
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEe-----eeC-------------cccccccC---CHH-HHHHcCcC-CCCCe
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDV-----MDG-------------RFVPNITI---GPL-VVDALRPV-TDLPL 118 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDI-----mDG-------------~fvpn~~~---G~~-~I~~ir~~-t~~~i 118 (281)
|-++++=+..-.+.++.+.+.|...+.+-= -.| .+.+.+.| |.+ +++.+++. .+.++
T Consensus 58 Pi~lAsG~~~~~~~~~~~~~~G~Gavv~kTvt~~p~~gn~~Pr~~~~~~~~~~iN~~Gl~n~G~~~~l~~i~~~~~~~~i 137 (335)
T TIGR01036 58 PLGLAAGFDKDGEAIDALGAMGFGFLEIGTVTPKPQPGNPRPRLFRLIEDEALINRMGFNNHGADVLVERLKRARYKGPI 137 (335)
T ss_pred CcEeCCccCCCHHHHHHHHhcCCCEEEeCCcCCCCCCCCCCCCEEECccccccccCCCCCChhHHHHHHHHhhccCCCcE
Confidence 666666666666788888888888776520 011 22222233 333 35556542 34566
Q ss_pred eEEEEec-------ChhhHHHHHHHcC--CCEEEEccccc---------ccccHHHHHHHHHHc-C-------CcEEEEE
Q 023494 119 DVHLMIV-------EPEQRVPDFIKAG--ADIVSVHCEQS---------STIHLHRTLNQIKDL-G-------AKAGVVL 172 (281)
Q Consensus 119 daHLmv~-------dp~~~i~~~~~aG--Ad~Itvh~Ea~---------~~~~i~~~l~~ik~~-G-------~k~Glai 172 (281)
-+-+..+ .+++|.+.+.+++ ||++.+-.-+. ..+...++++.+++. . +-+.+=+
T Consensus 138 ~vsi~~~~~~~~~~~~~dy~~~~~~~~~~ad~iElNlScPn~~~~~~~~~~~~~~~i~~~V~~~~~~~~~~~~~Pv~vKL 217 (335)
T TIGR01036 138 GINIGKNKDTPSEDAKEDYAACLRKLGPLADYLVVNVSSPNTPGLRDLQYKAELRDLLTAVKQEQDGLRRVHRVPVLVKI 217 (335)
T ss_pred EEEEeCCCCCCcccCHHHHHHHHHHHhhhCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHHhhhhccCCceEEEe
Confidence 6655443 3567887777776 99998843221 012345666666543 1 5677789
Q ss_pred CCCCCHHHHHHhhc-----cCCEEEEEee---------------cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 173 NPATSLSAIECVLD-----VVDLVLIMSV---------------NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 173 ~p~t~ie~~~~~l~-----~vD~IlvmsV---------------~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
.|+...+.+.++.+ .+|-|.+.-. .-|.+|....|..++.++++++..+ .+++|..-
T Consensus 218 sP~~~~~~i~~ia~~~~~~GadGi~l~NT~~~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~---~~ipiig~ 294 (335)
T TIGR01036 218 APDLTESDLEDIADSLVELGIDGVIATNTTVSRSLVQGPKNSDETGGLSGKPLQDKSTEIIRRLYAELQ---GRLPIIGV 294 (335)
T ss_pred CCCCCHHHHHHHHHHHHHhCCcEEEEECCCCccccccCccccCCCCcccCHHHHHHHHHHHHHHHHHhC---CCCCEEEE
Confidence 99876433444332 2676654210 1134566677888888888877653 24788889
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|||. .+.+.+++.+|||.+-+||+++.
T Consensus 295 GGI~~~~da~e~l~aGA~~Vqv~ta~~~ 322 (335)
T TIGR01036 295 GGISSAQDALEKIRAGASLLQIYSGFIY 322 (335)
T ss_pred CCCCCHHHHHHHHHcCCcHHHhhHHHHH
Confidence 9998 88899999999999999999875
|
The subfamilies 1 and 2 share extensive homology, particularly toward the C-terminus. This subfamily has a longer N-terminal region. |
| >PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00054 Score=64.26 Aligned_cols=95 Identities=14% Similarity=0.171 Sum_probs=65.7
Q ss_pred cHHHHHHHHHHc------CCcEEEEECCCCCHHHHHHhhc-------cCCEEEEEeecCCCCCCccchh----HHHHHHH
Q 023494 153 HLHRTLNQIKDL------GAKAGVVLNPATSLSAIECVLD-------VVDLVLIMSVNPGFGGQSFIES----QVKKISD 215 (281)
Q Consensus 153 ~i~~~l~~ik~~------G~k~Glai~p~t~ie~~~~~l~-------~vD~IlvmsV~pG~~GQ~f~~~----~l~kI~~ 215 (281)
.+.+.++.+|++ ..++-+-. . .++.+.+.++ .+|.|++ +...+.|+ ..+.+++
T Consensus 185 ~i~~av~~~r~~~~~~~~~~kIeVEv--~-tleea~ea~~~~~~~~agaDiImL-------Dnm~~~~~~~~~~~e~l~~ 254 (308)
T PLN02716 185 GITNAVQSADKYLEEKGLSMKIEVET--R-TLEEVKEVLEYLSDTKTSLTRVML-------DNMVVPLENGDVDVSMLKE 254 (308)
T ss_pred CHHHHHHHHHHhhhhcCCCeeEEEEE--C-CHHHHHHHHHhcccccCCCCEEEe-------CCCcccccccCCCHHHHHH
Confidence 366788888872 23455544 3 3666666666 3899986 33222333 5566666
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
..++++. ..++++.||||++|+.++.+.|+|++++|+-..++
T Consensus 255 av~~~~~---~~~lEaSGGIt~~ni~~yA~tGVD~Is~Galthsa 296 (308)
T PLN02716 255 AVELING---RFETEASGNVTLDTVHKIGQTGVTYISSGALTHSV 296 (308)
T ss_pred HHHhhCC---CceEEEECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence 6666543 36799999999999999999999999999865543
|
|
| >PRK08227 autoinducer 2 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0026 Score=58.60 Aligned_cols=171 Identities=13% Similarity=0.155 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-CCCCCeeEEEEec-----Chh-----hHHHHHHHcCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIV-----EPE-----QRVPDFIKAGA 139 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~-----dp~-----~~i~~~~~aGA 139 (281)
++.+.+..+.. |+|.+-+ ..-+++.... ..+.++.+||=-. +|. --++.+.+.||
T Consensus 43 ~~~~~~~~i~~-~~da~~~-------------~~G~~~~~~~~~~~~~lil~ls~~t~~~~~~~~~~l~~sVeeAvrlGA 108 (264)
T PRK08227 43 RIDINIAPLFP-YADVLMC-------------TRGILRSVVPPATNKPVVLRASGGNSILKELSNEAVAVDMEDAVRLNA 108 (264)
T ss_pred ChHHHHHHHhh-cCCEEEe-------------ChhHHHhcccccCCCcEEEEEcCCCCCCCCCCcccceecHHHHHHCCC
Confidence 55666777776 6765422 1224444332 3557788876542 121 13788999999
Q ss_pred CEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECCCCC-H----HHHHHhhc-----cCCEEEEEeecCCCCCC
Q 023494 140 DIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPATS-L----SAIECVLD-----VVDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 140 d~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p~t~-i----e~~~~~l~-----~vD~IlvmsV~pG~~GQ 203 (281)
|.|.+|..-.+ ..++.++.++++++|+-+-. +.|..+ + +.+..... .+|+|=+ -+|
T Consensus 109 dAV~~~v~~Gs~~E~~~l~~l~~v~~ea~~~G~Plla-~~prG~~~~~~~~~ia~aaRiaaELGADiVK~--~y~----- 180 (264)
T PRK08227 109 CAVAAQVFIGSEYEHQSIKNIIQLVDAGLRYGMPVMA-VTAVGKDMVRDARYFSLATRIAAEMGAQIIKT--YYV----- 180 (264)
T ss_pred CEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEE-EecCCCCcCchHHHHHHHHHHHHHHcCCEEec--CCC-----
Confidence 99999954321 23566778889999997665 444332 1 11111111 1576632 112
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.+.+ +++.+-. ..++.+.||=+.. .+...+++||-.+++|+.||+++||.+.++.|...+
T Consensus 181 ---~~~f---~~vv~a~-----~vPVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~GRNIfQ~~~p~~~~~al~~IV 246 (264)
T PRK08227 181 ---EEGF---ERITAGC-----PVPIVIAGGKKLPERDALEMCYQAIDEGASGVDMGRNIFQSEHPVAMIKAVHAVV 246 (264)
T ss_pred ---HHHH---HHHHHcC-----CCcEEEeCCCCCCHHHHHHHHHHHHHcCCceeeechhhhccCCHHHHHHHHHHHH
Confidence 1233 3333321 3688899998832 455678999999999999999999999999988754
|
|
| >cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.004 Score=57.49 Aligned_cols=165 Identities=17% Similarity=0.183 Sum_probs=102.1
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcc-----cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRF-----VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~f-----vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.+.++.|.+.|++.|++ |+| +|.++--..+++.+....+..+-+ ++.+. +-++.+.++|++.+.+-.-
T Consensus 23 ~~i~~~L~~~Gv~~IEv----Gs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~--~~~~~-~dv~~A~~~g~~~i~i~~~ 95 (274)
T cd07938 23 IELIDALSAAGLRRIEV----TSFVSPKWVPQMADAEEVLAGLPRRPGVRYSA--LVPNL-RGAERALAAGVDEVAVFVS 95 (274)
T ss_pred HHHHHHHHHcCCCEEEe----CCCCCcccccccCCHHHHHhhcccCCCCEEEE--ECCCH-HHHHHHHHcCcCEEEEEEe
Confidence 35567788899999888 665 344432234555554433333333 23333 3588999999999888754
Q ss_pred ccc--------------cccHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 148 QSS--------------TIHLHRTLNQIKDLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 148 a~~--------------~~~i~~~l~~ik~~G~k~Glai~-----p---~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
... .+...+.++.+|+.|+++.+.+. | .++.+.+.++.+. +|.|.+ +-.
T Consensus 96 ~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l----~DT 171 (274)
T cd07938 96 ASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISL----GDT 171 (274)
T ss_pred cCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHHcCCCEEEE----CCC
Confidence 320 12355668899999998865433 1 2355555554432 676654 233
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
.|.....++.+.++.+++..+ +.+|.+ |-|.-..|.-..+++|||.+=
T Consensus 172 ~G~~~P~~v~~lv~~l~~~~~----~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id 223 (274)
T cd07938 172 IGVATPAQVRRLLEAVLERFP----DEKLALHFHDTRGQALANILAALEAGVRRFD 223 (274)
T ss_pred CCccCHHHHHHHHHHHHHHCC----CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 454344445566777666543 256666 778888899999999999764
|
3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy |
| >PRK06256 biotin synthase; Validated | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0056 Score=57.68 Aligned_cols=197 Identities=19% Similarity=0.149 Sum_probs=112.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccccc---CCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~---~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
++..+.++++.+.+.|+..++ +..+.+-|... .=.++++.|++.+++.+.+++-..++ +.++.+.++|++.+++
T Consensus 92 s~eeI~~~~~~~~~~g~~~~~--l~~~g~~p~~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~-e~l~~LkeaG~~~v~~ 168 (336)
T PRK06256 92 DIEELIEAAKEAIEEGAGTFC--IVASGRGPSGKEVDQVVEAVKAIKEETDLEICACLGLLTE-EQAERLKEAGVDRYNH 168 (336)
T ss_pred CHHHHHHHHHHHHHCCCCEEE--EEecCCCCCchHHHHHHHHHHHHHhcCCCcEEecCCcCCH-HHHHHHHHhCCCEEec
Confidence 444555666666777876554 44544445422 23355666665544444443333333 3678899999999988
Q ss_pred ccccc--------c---cccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc-----cCCEEEEEeec--CCCC--C
Q 023494 145 HCEQS--------S---TIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD-----VVDLVLIMSVN--PGFG--G 202 (281)
Q Consensus 145 h~Ea~--------~---~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~-----~vD~IlvmsV~--pG~~--G 202 (281)
..|+. + .++..+.++.+++.|++++ +.+..+...+.+.+.+. .+|.|.+.... ||.. +
T Consensus 169 ~lEts~~~~~~i~~~~t~~~~i~~i~~a~~~Gi~v~~~~I~GlgEt~ed~~~~~~~l~~l~~~~v~i~~l~P~pGT~l~~ 248 (336)
T PRK06256 169 NLETSRSYFPNVVTTHTYEDRIDTCEMVKAAGIEPCSGGIIGMGESLEDRVEHAFFLKELDADSIPINFLNPIPGTPLEN 248 (336)
T ss_pred CCccCHHHHhhcCCCCCHHHHHHHHHHHHHcCCeeccCeEEeCCCCHHHHHHHHHHHHhCCCCEEeecccccCCCCCCCC
Confidence 77742 0 1124467778888998775 34444444444333332 26766654443 5642 2
Q ss_pred Ccc--chhHHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcH-HHHHHcCCcEEEEcccccCCC-CHHHHHHHHHH
Q 023494 203 QSF--IESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNA-YKVIEAGANALVAGSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 203 Q~f--~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i-~~~~~aGAD~~VvGSaIf~a~-dp~~~~~~l~~ 272 (281)
++. ..+.++.+.-+|-+++ +..|.+.||=. .... ..+. +|||.+++|-+++... ++.+-.+-+++
T Consensus 249 ~~~~~~~e~l~~ia~~Rl~~p----~~~I~~~~gr~~~~~~~~~~~~-~g~~~~~~g~~lt~~g~~~~~d~~~~~~ 319 (336)
T PRK06256 249 HPELTPLECLKTIAIFRLINP----DKEIRIAGGREVNLRSLQPLGL-GGANSVIVGNYLTTVGQPATADLDMIED 319 (336)
T ss_pred CCCCCHHHHHHHHHHHHHHCC----CCeeEecCchhhhchhhHHHHh-ccCceeeECCcccCCCCChHHHHHHHHH
Confidence 222 2344555665566654 35687888863 3333 3344 7999999999998654 44444444443
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.012 Score=53.10 Aligned_cols=197 Identities=15% Similarity=0.143 Sum_probs=131.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-+.-+....++++|+|-|-+ |--+.- -.-.+-+..||+....++.. -..-..++++.+.+..++.+|+-.
T Consensus 19 ~~Pd~v~aA~~a~~aGAdgITv-----HlReDrRHI~d~Dv~~l~~~~~~~lNl--E~a~~~emi~ia~~vkP~~vtLVP 91 (237)
T TIGR00559 19 NEPDPLRAALIAEQAGADGITV-----HLREDRRHIQDRDVYDLKEALTTPFNI--EMAPTEEMIRIAEEIKPEQVTLVP 91 (237)
T ss_pred CCCCHHHHHHHHHHcCCCEEEe-----cCCCCcCcCCHHHHHHHHHHcCCCEEe--ccCCCHHHHHHHHHcCCCEEEECC
Confidence 3345567777888999998644 211221 22345677787765555554 333334688999999999999998
Q ss_pred ccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeec-CCCCCCccchhHHH
Q 023494 147 EQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN-PGFGGQSFIESQVK 211 (281)
Q Consensus 147 Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~-pG~~GQ~f~~~~l~ 211 (281)
|.- ..+.+..+++.+++.|+++.+.+.|+ .+.++.-.+ .+|.|-+.|-. .-..++.-...-++
T Consensus 92 Ekr~ElTTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~VELhTG~YA~a~~~~~~~~el~ 169 (237)
T TIGR00559 92 EARDEVTTEGGLDVARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADRIEIHTGPYANAYNKKEMAEELQ 169 (237)
T ss_pred CCCCCccCCcCchhhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHH
Confidence 742 01137889999999999999999986 333433322 48999875432 11111111123377
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-C-CcEEEEcccccCC---CCHHHHHHHHHHhcC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-G-ANALVAGSAVFGA---KDYAEAIKGIKTSKR 275 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-G-AD~~VvGSaIf~a---~dp~~~~~~l~~~~~ 275 (281)
+|+...+...+ .++.+...-|+|.+|+..+.+. + .+-+-+|.+|+.. --.++++++|++.++
T Consensus 170 ~i~~aa~~A~~--lGL~VnAGHgLny~Nv~~i~~~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~ 236 (237)
T TIGR00559 170 RIVKASVHAHS--LGLKVNAGHGLNYHNVKYFAEILPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK 236 (237)
T ss_pred HHHHHHHHHHH--cCCEEecCCCCCHHhHHHHHhCCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 77777666554 4577889999999999998766 3 5889999888752 245678888887765
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >PRK05500 bifunctional orotidine 5'-phosphate decarboxylase/orotate phosphoribosyltransferase protein; Validated | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0015 Score=64.83 Aligned_cols=181 Identities=13% Similarity=0.147 Sum_probs=111.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccc----cCCHHHH---HHcCcC--CCCCeeEEEEecChh---hHHHHHH-Hc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNI----TIGPLVV---DALRPV--TDLPLDVHLMIVEPE---QRVPDFI-KA 137 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~~G~~~I---~~ir~~--t~~~idaHLmv~dp~---~~i~~~~-~a 137 (281)
.+.+..+.+.++=.|++ ..|=||+ .+|..-+ +++.++ ++.++.+|.|..|.. .|.+.++ ..
T Consensus 41 ~~~~f~~~ii~at~~~v------~a~Kp~~afye~~G~~G~~~l~~~~~~~~~~~~vI~DaKrgDI~T~~~yA~a~f~~~ 114 (477)
T PRK05500 41 QLWTWLKFIIEETADLV------CAYKPTLGFYQALGSPGLELLLEVLAAIPPDIPIILDAKHGDLNTSTIFAKTIFEQW 114 (477)
T ss_pred HHHHHHHHHHHHhhCcc------cEEeccHHHHHhhChHHHHHHHHHHHHhccCCeEEEEecccChHHHHHHHHHHHhhc
Confidence 44555555555545543 2355775 4466333 222221 468899999998874 3666666 58
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-HHH-----------HhhccCCEEE----EEeecCCCC
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-AIE-----------CVLDVVDLVL----IMSVNPGFG 201 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-~~~-----------~~l~~vD~Il----vmsV~pG~~ 201 (281)
|+|.||+|.-.. .+.+..+++. .|+.+-+....+.|-. .++ .+.+.+.-.. ++-|-
T Consensus 115 ~aDAiTv~pymG-~Dsl~pfl~~---~~kgvfvL~~tSNpga~~~Q~~~~~g~~ly~~v~~~~~~~~~~~~~g~Vv---- 186 (477)
T PRK05500 115 QVDAVTLSPYAG-QDHVAPFLVY---PDKGVFILCHTSNPGAIALQEYPTPENPFYLQVVKEAKTWGTPEQLGLEV---- 186 (477)
T ss_pred CCCEEEECCccC-ccchHHHHhc---CCCcEEEEEeCCCcCHHHHhhcccCCCcHHHHHHHHHHHhCCCCceEEEE----
Confidence 999999998653 6677777765 6666666553343321 222 2221111000 11111
Q ss_pred CCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCc------EEEEcccccCCCCHHHHHHHHHH
Q 023494 202 GQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGAN------ALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 202 GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD------~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
+.+ .+.++++|+..++ ..| .-.||..+ ++.+++++|.| .+.+|++|..++||.+.++++++
T Consensus 187 -----GAT~p~~~~~iR~~~p~----~~i-L~PGiGAQGg~~~~~~~~g~~~~~~g~li~v~R~il~a~~~~~~a~~l~~ 256 (477)
T PRK05500 187 -----GTTNPEVLAKIRQIAPE----RLI-LLRSIWAEKGNLNQILTAGLNSNGDGLLIPVPQDLLGAANLKEQVKSLRE 256 (477)
T ss_pred -----CCCChHHHHHHHHhCCC----CEE-EccccccCCCCHHHHHHhhcccCcCceEEEeCHHHhcCCCHHHHHHHHHH
Confidence 112 2345666666543 233 67888766 58999999998 89999999999999999999988
Q ss_pred hcC
Q 023494 273 SKR 275 (281)
Q Consensus 273 ~~~ 275 (281)
.+.
T Consensus 257 ~i~ 259 (477)
T PRK05500 257 EIN 259 (477)
T ss_pred HHH
Confidence 653
|
|
| >PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0011 Score=62.41 Aligned_cols=186 Identities=21% Similarity=0.256 Sum_probs=120.1
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-CC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA-GA 139 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a-GA 139 (281)
+.+.+..-+.++..|++.+-+=+---.+.. .-...+...|+.. .+|++-+..+ +..++..++ |-
T Consensus 93 y~s~~~~~~a~~asg~e~vTva~rr~~~~~--~~~~~~~~~~~~~-----~~~~lpNTag~~ta~eAv~~a~lare~~~~ 165 (326)
T PRK11840 93 YKDFEETAAAVEASGAEIVTVAVRRVNVSD--PGAPMLTDYIDPK-----KYTYLPNTAGCYTAEEAVRTLRLAREAGGW 165 (326)
T ss_pred CCCHHHHHHHHHHhCCCEEEEEEEeecCcC--CCcchHHHhhhhc-----CCEECccCCCCCCHHHHHHHHHHHHHhcCC
Confidence 345666666777888988766443322111 1124555555421 2355555443 233445565 56
Q ss_pred CEEEEc--cccc-ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEEe-ecC-CCCCCcc-chhHH
Q 023494 140 DIVSVH--CEQS-STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMS-VNP-GFGGQSF-IESQV 210 (281)
Q Consensus 140 d~Itvh--~Ea~-~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~Ilvms-V~p-G~~GQ~f-~~~~l 210 (281)
|||-+- .|.. ..+++.++++++++. |..+-...++ +....+.+.+. --+.+|. -.| | +|+.. .|+.+
T Consensus 166 ~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~--d~~~a~~l~~~-g~~avmPl~~pIG-sg~gv~~p~~i 241 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSD--DPIAAKRLEDA-GAVAVMPLGAPIG-SGLGIQNPYTI 241 (326)
T ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHhc-CCEEEeecccccc-CCCCCCCHHHH
Confidence 887654 4421 245789999999998 9988777764 33334444332 2266776 344 5 45554 45554
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.+ ++. .++++.||+||+ ++++....+.|+|.+-+-|+|.+++||...++.|+..
T Consensus 242 ~~~---~e~-----~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~~a 297 (326)
T PRK11840 242 RLI---VEG-----ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMKLA 297 (326)
T ss_pred HHH---HHc-----CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHHHH
Confidence 443 333 247899999999 8899999999999999999999999999999988864
|
|
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0047 Score=56.77 Aligned_cols=175 Identities=15% Similarity=0.118 Sum_probs=108.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCc---ccccccC-CHHHHHHcCcCC--CCCeeEEEEecC-hhhHHHHHHHcCCCEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGR---FVPNITI-GPLVVDALRPVT--DLPLDVHLMIVE-PEQRVPDFIKAGADIV 142 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~---fvpn~~~-G~~~I~~ir~~t--~~~idaHLmv~d-p~~~i~~~~~aGAd~I 142 (281)
....+..+.|.++|+|+|++..-.+. +.....| ..+.++++++.. +.++.+.+.... ....++.+.+.|.+.|
T Consensus 20 ~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~i 99 (266)
T cd07944 20 EFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMI 99 (266)
T ss_pred HHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEE
Confidence 34456667888999999998532221 0000111 256777776542 345554332221 1356788889999986
Q ss_pred EEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 143 SVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 143 tvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.+-......+...+.++.+|+.|.++.+.+ ...++.+.+.++++. +|.|.+. -..|.....++.+.++.
T Consensus 100 ri~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~~~~~~~~~~~~~~g~~~i~l~----DT~G~~~P~~v~~lv~~ 175 (266)
T cd07944 100 RVAFHKHEFDEALPLIKAIKEKGYEVFFNLMAISGYSDEELLELLELVNEIKPDVFYIV----DSFGSMYPEDIKRIISL 175 (266)
T ss_pred EEecccccHHHHHHHHHHHHHCCCeEEEEEEeecCCCHHHHHHHHHHHHhCCCCEEEEe----cCCCCCCHHHHHHHHHH
Confidence 555332134567788999999999887653 334566666666543 6766552 33454444555666777
Q ss_pred HHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 216 LRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 216 lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
+++.+++ +++|++ |-|....|.-..+++|++.+
T Consensus 176 l~~~~~~---~~~i~~H~Hn~~Gla~AN~laA~~aGa~~v 212 (266)
T cd07944 176 LRSNLDK---DIKLGFHAHNNLQLALANTLEAIELGVEII 212 (266)
T ss_pred HHHhcCC---CceEEEEeCCCccHHHHHHHHHHHcCCCEE
Confidence 7765431 256776 77888889999999999875
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >TIGR00433 bioB biotin synthetase | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0095 Score=54.83 Aligned_cols=182 Identities=17% Similarity=0.121 Sum_probs=104.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
++.++++.+.+.|+..+++ .++.+-|.-..-.+.++.|++. .++.+.++.-..+ .+.++.+.++|++.+.+-.|
T Consensus 66 ei~~~~~~~~~~g~~~~~l--~~~g~~~~~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~-~e~l~~Lk~aG~~~v~i~~E 142 (296)
T TIGR00433 66 EVLEEARKAKAAGATRFCL--VASGRGPKDREFMEYVEAMVQIVEEMGLKTCATLGLLD-PEQAKRLKDAGLDYYNHNLD 142 (296)
T ss_pred HHHHHHHHHHHCCCCEEEE--EEecCCCChHHHHHHHHHHHHHHHhCCCeEEecCCCCC-HHHHHHHHHcCCCEEEEccc
Confidence 4455566667778887664 3333334322113455555432 3444444432223 34678899999999999888
Q ss_pred cccc------------ccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc-----cCCEEEEE--eecCCCCCCccc
Q 023494 148 QSST------------IHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD-----VVDLVLIM--SVNPGFGGQSFI 206 (281)
Q Consensus 148 a~~~------------~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~-----~vD~Ilvm--sV~pG~~GQ~f~ 206 (281)
. +. +...+.++.+++.|++++. .+.++...+.+.+.+. .+|.+.+. ...||..=..+.
T Consensus 143 ~-~~~~~~~i~~~~s~~~~~~ai~~l~~~Gi~v~~~~i~Gl~et~~d~~~~~~~l~~l~~~~i~l~~l~p~~gT~l~~~~ 221 (296)
T TIGR00433 143 T-SQEFYSNIISTHTYDDRVDTLENAKKAGLKVCSGGIFGLGETVEDRIGLALALANLPPESVPINFLVKIKGTPLADNK 221 (296)
T ss_pred C-CHHHHhhccCCCCHHHHHHHHHHHHHcCCEEEEeEEEeCCCCHHHHHHHHHHHHhCCCCEEEeeeeEEcCCCccCCCC
Confidence 3 21 1233567788899998764 3333444444444332 26766443 344565311222
Q ss_pred ----hhHHHHHHHHHHHhhhcCCCCeEEEecCCC--h-hcHHH-HHHcCCcEEEEcccccCC
Q 023494 207 ----ESQVKKISDLRRMCLEKGVNPWIEVDGGVG--P-KNAYK-VIEAGANALVAGSAVFGA 260 (281)
Q Consensus 207 ----~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~-e~i~~-~~~aGAD~~VvGSaIf~a 260 (281)
.+.++.+...|.+++. ..|-+.||=- . +..+. ++.+|||.+++|-+++..
T Consensus 222 ~~s~~~~~~~ia~~r~~lp~----~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~g~~~~~~ 279 (296)
T TIGR00433 222 ELSADDALKTIALARIIMPK----AEIRLAGGREVNMRELQQAMCFMAGANSIFVGDYLTTT 279 (296)
T ss_pred CCCHHHHHHHHHHHHHHCCc----ceEEEeCCcchhhhhhHHHHHHHhcCceEEEcCcccCC
Confidence 3446667777777654 2455666653 1 22233 689999999999999864
|
Catalyzes the last step of the biotin biosynthesis pathway. |
| >COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0018 Score=57.50 Aligned_cols=183 Identities=18% Similarity=0.149 Sum_probs=114.7
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-|-.-|..+-....+.|.++|++.|+| +-+-..-.+.|+.+++. ++..+-+= -|-||. -++.+.++
T Consensus 14 ~vI~Vlr~~~~e~a~~~a~Ali~gGi~~IEI-------Tl~sp~a~e~I~~l~~~~p~~lIGAG-TVL~~~-q~~~a~~a 84 (211)
T COG0800 14 PVVPVIRGDDVEEALPLAKALIEGGIPAIEI-------TLRTPAALEAIRALAKEFPEALIGAG-TVLNPE-QARQAIAA 84 (211)
T ss_pred CeeEEEEeCCHHHHHHHHHHHHHcCCCeEEE-------ecCCCCHHHHHHHHHHhCcccEEccc-cccCHH-HHHHHHHc
Confidence 3667777667766666778889999999988 23445667788888764 32222221 234665 45778999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC--CCCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG--FGGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG--~~GQ~f~~~~l~kI~~ 215 (281)
||+.+.=+.- -.++++.++++|+-..--+ .||-|....+-...+.+=+ .|+ ++|-. . ++.
T Consensus 85 Ga~fiVsP~~------~~ev~~~a~~~~ip~~PG~--~TptEi~~Ale~G~~~lK~---FPa~~~Gg~~----~---~ka 146 (211)
T COG0800 85 GAQFIVSPGL------NPEVAKAANRYGIPYIPGV--ATPTEIMAALELGASALKF---FPAEVVGGPA----M---LKA 146 (211)
T ss_pred CCCEEECCCC------CHHHHHHHHhCCCcccCCC--CCHHHHHHHHHcChhheee---cCccccCcHH----H---HHH
Confidence 9998764433 1367888888876443222 2566655554334554433 453 23321 1 222
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC-----CCHHHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA-----KDYAEAIKGIKT 272 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a-----~dp~~~~~~l~~ 272 (281)
+.--+ .++.+...|||+++|+++.+++|+..+=+||.++.. +|+.+..+..++
T Consensus 147 ~~gP~----~~v~~~pTGGVs~~N~~~yla~gv~avG~Gs~l~~~~~~~~~~~~~i~~~a~~ 204 (211)
T COG0800 147 LAGPF----PQVRFCPTGGVSLDNAADYLAAGVVAVGLGSWLVPKDLIAAGDWDRITELARE 204 (211)
T ss_pred HcCCC----CCCeEeecCCCCHHHHHHHHhCCceEEecCccccChhhhhcccHHHHHHHHHH
Confidence 22222 246799999999999999999997766668999853 566555444444
|
|
| >COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.006 Score=55.94 Aligned_cols=178 Identities=22% Similarity=0.284 Sum_probs=115.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-C-CCCCeeEEEEecC-----hh-----hHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-V-TDLPLDVHLMIVE-----PE-----QRVPDFI 135 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~-t~~~idaHLmv~d-----p~-----~~i~~~~ 135 (281)
.+.+++..++.+.++|+|.+.. + +-+++.... + .++|+.+||=-++ +. ..++.+.
T Consensus 41 gl~d~e~~v~~v~~~g~dav~~-----------~--~G~~~~~~~~y~~dvplivkl~~~t~l~~~~~~~~~~~~ve~ai 107 (265)
T COG1830 41 GLEDPENIVAKVAEAGADAVAM-----------T--PGIARSVHRGYAHDVPLIVKLNGSTSLSPDPNDQVLVATVEDAI 107 (265)
T ss_pred cccCHHHHHHHHHhcCCCEEEe-----------c--HhHHhhcCccccCCcCEEEEeccccccCCCcccceeeeeHHHHH
Confidence 3458899999999999987643 1 224555433 3 3688888886652 11 1367888
Q ss_pred HcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECCCCCHH---------HHHH---hhc--cCCEEEEEe
Q 023494 136 KAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPATSLS---------AIEC---VLD--VVDLVLIMS 195 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p~t~ie---------~~~~---~l~--~vD~Ilvms 195 (281)
.+|||.|.+|.--.+ .+.+.++.+.++++|+-+-+..-|-.+.- .+.. +.. .+|+|=.
T Consensus 108 ~lgadAV~~~Vy~Gse~e~~~i~~~~~v~~~a~~~Gmp~v~~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK~-- 185 (265)
T COG1830 108 RLGADAVGATVYVGSETEREMIENISQVVEDAHELGMPLVAWAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIKT-- 185 (265)
T ss_pred hCCCcEEEEEEecCCcchHHHHHHHHHHHHHHHHcCCceEEEEeccCCcccccccccHHHHHHHHHHHHHhcCCeEee--
Confidence 999999999943211 23466778888999998887655543321 1111 101 1566632
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-------cHHHHHHcCCcEEEEcccccCCCCHHHHHH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAYKVIEAGANALVAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~ 268 (281)
-.||- ++ ..+++.+.+ ..++.+.||=+.+ -...++++||-.+++|+.||++++|++.++
T Consensus 186 ~ytg~------~e---~F~~vv~~~-----~vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~~GRNifQ~~~p~~m~~ 251 (265)
T COG1830 186 KYTGD------PE---SFRRVVAAC-----GVPVVIAGGPKTETEREFLEMVTAAIEAGAMGVAVGRNIFQHEDPEAMVK 251 (265)
T ss_pred cCCCC------hH---HHHHHHHhC-----CCCEEEeCCCCCCChHHHHHHHHHHHHccCcchhhhhhhhccCChHHHHH
Confidence 12221 12 233344333 2688899998873 345668899999999999999999999888
Q ss_pred HHHHhc
Q 023494 269 GIKTSK 274 (281)
Q Consensus 269 ~l~~~~ 274 (281)
.+....
T Consensus 252 Ai~~Iv 257 (265)
T COG1830 252 AIQAIV 257 (265)
T ss_pred HHHHHh
Confidence 877643
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.009 Score=60.26 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=110.9
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcc--cccccCCHHHHHHcCcCCCCCeeEEEEecC---h-------hhHHHHHHHcCCC
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIVE---P-------EQRVPDFIKAGAD 140 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~f--vpn~~~G~~~I~~ir~~t~~~idaHLmv~d---p-------~~~i~~~~~aGAd 140 (281)
-+..+...+.|+|+||+==.|+.. .+.-.--.++|+++.+....|+.+===+.+ | .+.++.++++|||
T Consensus 270 ve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~~ip~~vGGGIr~~~d~~~~~~~~~e~~~~~l~~Gad 349 (538)
T PLN02617 270 VELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENVFVPLTVGGGIRDFTDANGRYYSSLEVASEYFRSGAD 349 (538)
T ss_pred HHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhCCCCEEEcCCccccccccccccchHHHHHHHHHcCCC
Confidence 355567778899999974444421 111111256788877665566655322333 2 2357889999999
Q ss_pred EEEEcccccccc----------cHHHHHHHHHHcCCc-EEEEECCC----------------------------------
Q 023494 141 IVSVHCEQSSTI----------HLHRTLNQIKDLGAK-AGVVLNPA---------------------------------- 175 (281)
Q Consensus 141 ~Itvh~Ea~~~~----------~i~~~l~~ik~~G~k-~Glai~p~---------------------------------- 175 (281)
-|++...+.... ++.-+-+.++++|-+ +.+++.+.
T Consensus 350 kV~i~s~Av~~~~~~~~~~~~~~p~~i~~~~~~fg~q~ivvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 429 (538)
T PLN02617 350 KISIGSDAVYAAEEYIASGVKTGKTSIEQISRVYGNQAVVVSIDPRRVYVKDPSDVPFKTVKVTNPGPNGEEYAWYQCTV 429 (538)
T ss_pred EEEEChHHHhChhhhhccccccCHHHHHHHHHHcCCceEEEEEecCcCcccCccccccccccccccCcCcccceEEEEEE
Confidence 999997642110 234455556677877 55565532
Q ss_pred ------CC---HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH
Q 023494 176 ------TS---LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244 (281)
Q Consensus 176 ------t~---ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~ 244 (281)
|. ++.++++.+. +.-|++-+++---..+-|.-+.++ ++++.. ++++.+-||++ ++++.++.
T Consensus 430 ~gg~~~~~~~~~~~~~~~~~~Gageil~t~id~DGt~~G~d~~l~~---~v~~~~-----~ipviasGG~g~~~d~~~~~ 501 (538)
T PLN02617 430 KGGREGRPIGAYELAKAVEELGAGEILLNCIDCDGQGKGFDIELVK---LVSDAV-----TIPVIASSGAGTPEHFSDVF 501 (538)
T ss_pred ecCcccCCCCHHHHHHHHHhcCCCEEEEeeccccccccCcCHHHHH---HHHhhC-----CCCEEEECCCCCHHHHHHHH
Confidence 11 2334444333 667877777542223335444443 334332 47888999998 88998888
Q ss_pred H-cCCcEEEEcccc-cCCCCHHHHHHHH
Q 023494 245 E-AGANALVAGSAV-FGAKDYAEAIKGI 270 (281)
Q Consensus 245 ~-aGAD~~VvGSaI-f~a~dp~~~~~~l 270 (281)
+ .|||...++|.+ |+.-++.+.-+.|
T Consensus 502 ~~~~~~a~~aa~~fh~~~~~~~~~k~~l 529 (538)
T PLN02617 502 SKTNASAALAAGIFHRKEVPISSVKEHL 529 (538)
T ss_pred hcCCccEEEEEeeeccCCCCHHHHHHHH
Confidence 6 679988877665 3333444333333
|
|
| >COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0036 Score=56.20 Aligned_cols=162 Identities=22% Similarity=0.311 Sum_probs=97.4
Q ss_pred HHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC---------hh-----hHHHHHHHcCC
Q 023494 76 VKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE---------PE-----QRVPDFIKAGA 139 (281)
Q Consensus 76 l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d---------p~-----~~i~~~~~aGA 139 (281)
+..+.++|+|.+++= ...|+.+|. .-+++..++..++| +|.|+.- ++ +-++.+.++|+
T Consensus 14 l~~A~~~GAdRiELC~~La~GG~TPS----yG~~k~a~~~~~ip--v~~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~ 87 (241)
T COG3142 14 LLAAQAAGADRIELCDALAEGGLTPS----YGVIKEAVELSKIP--VYVMIRPRGGDFVYSDDELEIMLEDIRLARELGV 87 (241)
T ss_pred HHHHHHcCCceeehhhccccCCCCCC----HHHHHHHHhhcCCc--eEEEEecCCCCcccChHHHHHHHHHHHHHHHcCC
Confidence 556778999998872 556777774 44677666654444 5557731 11 23566789999
Q ss_pred CEEEEcccccc-ccc---HHHHHHHHHHcCCcEEEEECCC-----CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhH
Q 023494 140 DIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGVVLNPA-----TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 140 d~Itvh~Ea~~-~~~---i~~~l~~ik~~G~k~Glai~p~-----t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
+.|.+.+-... .-+ +++++.+.. -.++.++-. +|.+.++.+++. +..||- -+|..-..+.
T Consensus 88 ~GVV~G~lt~dg~iD~~~le~Li~aA~----gL~vTFHrAFD~~~d~~~ale~li~~Gv~RILT------sGg~~sa~eg 157 (241)
T COG3142 88 QGVVLGALTADGNIDMPRLEKLIEAAG----GLGVTFHRAFDECPDPLEALEQLIELGVERILT------SGGKASALEG 157 (241)
T ss_pred CcEEEeeecCCCccCHHHHHHHHHHcc----CCceeeehhhhhcCCHHHHHHHHHHCCCcEEec------CCCcCchhhh
Confidence 99999976421 111 333443332 333433311 255556665553 666652 1343334555
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAV 257 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaI 257 (281)
+++|+++.+.. +..+.|.+.|||+++|+..+ ...|++-+ =||++
T Consensus 158 ~~~l~~li~~a---~gri~Im~GaGV~~~N~~~l~~~tg~~e~-H~s~~ 202 (241)
T COG3142 158 LDLLKRLIEQA---KGRIIIMAGAGVRAENIAELVLLTGVTEV-HGSAG 202 (241)
T ss_pred HHHHHHHHHHh---cCCEEEEeCCCCCHHHHHHHHHhcCchhh-hhccc
Confidence 66666555554 34588999999999999998 67777644 34444
|
|
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.02 Score=51.76 Aligned_cols=196 Identities=17% Similarity=0.211 Sum_probs=131.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-+.-+....++++|+|-|-+ |--|.- -.-.+-+..|++....++.. -..-..++++.+.+.-++.+|+-.
T Consensus 22 ~~Pd~v~aA~~a~~aGAdgITv-----HlReDrRHI~d~Dv~~L~~~~~~~lNl--E~a~~~em~~ia~~~kP~~vtLVP 94 (239)
T PRK05265 22 NYPDPVRAALIAEQAGADGITV-----HLREDRRHIRDRDVRLLRETLKTELNL--EMAATEEMLDIALEVKPHQVTLVP 94 (239)
T ss_pred CCCCHHHHHHHHHHcCCCEEEe-----cCCCCcccCCHHHHHHHHHhcCCCEEe--ccCCCHHHHHHHHHCCCCEEEECC
Confidence 3446667778888999998644 211221 23456677788765455544 333334589999999999999998
Q ss_pred ccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC--CCCCccchhHH
Q 023494 147 EQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--FGGQSFIESQV 210 (281)
Q Consensus 147 Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG--~~GQ~f~~~~l 210 (281)
|.- ..+.+..+++.+++.|+++.+.+.|+ .+.++.-.+ .+|.|-+.|-.=. +.. -...-+
T Consensus 95 E~r~E~TTegGldv~~~~~~l~~~i~~L~~~gIrVSLFidP~--~~qi~~A~~~GAd~VELhTG~yA~a~~~--~~~~el 170 (239)
T PRK05265 95 EKREELTTEGGLDVAGQFDKLKPAIARLKDAGIRVSLFIDPD--PEQIEAAAEVGADRIELHTGPYADAKTE--AEAAEL 170 (239)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCc--chHHHH
Confidence 742 01237889999999999999999875 333333222 4899987654211 111 113447
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC---CCHHHHHHHHHHhcCc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA---KDYAEAIKGIKTSKRP 276 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a---~dp~~~~~~l~~~~~~ 276 (281)
+++....++..+. ++.+....|+|.+|+..+.+ -+..=+-+|.+|+.. --.+++++++++.++.
T Consensus 171 ~~~~~aa~~a~~l--GL~VnAGHgLny~Nv~~i~~ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~~ 238 (239)
T PRK05265 171 ERIAKAAKLAASL--GLGVNAGHGLNYHNVKPIAAIPGIEELNIGHAIIARALFVGLEEAVREMKRLMDE 238 (239)
T ss_pred HHHHHHHHHHHHc--CCEEecCCCCCHHhHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 7777777776554 56788999999999999866 456778889887742 2456788888876653
|
|
| >PRK06852 aldolase; Validated | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0076 Score=56.57 Aligned_cols=183 Identities=14% Similarity=0.072 Sum_probs=113.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-CCCCCeeEEEEec---------Chh----hHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIV---------EPE----QRVPD 133 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~---------dp~----~~i~~ 133 (281)
.+.+++..++.+.++|+|-+-+ + .-+++.... ..+.++.+||=-. ||. --++.
T Consensus 57 gl~dp~~~i~~~~~~g~dav~~-----~--------~G~l~~~~~~~~~~~lIlkl~~~t~l~~~~~~~p~~~l~~sVee 123 (304)
T PRK06852 57 DDADPEHLFRIASKAKIGVFAT-----Q--------LGLIARYGMDYPDVPYLVKLNSKTNLVKTSQRDPLSRQLLDVEQ 123 (304)
T ss_pred ccCCHHHHHHHHHhcCCCEEEe-----C--------HHHHHhhccccCCCcEEEEECCCCCcCCcccCCccccceecHHH
Confidence 5568888999999988987532 1 224444333 3467788876542 342 13778
Q ss_pred HHHcC------CCEEEEccccc------ccccHHHHHHHHHHcCCcEEEEECCCCC-------HHHHHHhhc-----cCC
Q 023494 134 FIKAG------ADIVSVHCEQS------STIHLHRTLNQIKDLGAKAGVVLNPATS-------LSAIECVLD-----VVD 189 (281)
Q Consensus 134 ~~~aG------Ad~Itvh~Ea~------~~~~i~~~l~~ik~~G~k~Glai~p~t~-------ie~~~~~l~-----~vD 189 (281)
+...| ||.|.+|.--. ...++.++.++++++|+-+.+...|.-+ .+.+..... .+|
T Consensus 124 AvrlG~~~~~~AdAV~v~v~~Gs~~E~~ml~~l~~v~~ea~~~GlPll~~~yprG~~i~~~~~~~~ia~aaRiaaELGAD 203 (304)
T PRK06852 124 VVEFKENSGLNILGVGYTIYLGSEYESEMLSEAAQIIYEAHKHGLIAVLWIYPRGKAVKDEKDPHLIAGAAGVAACLGAD 203 (304)
T ss_pred HHhcCCccCCCceEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCcEEEEeeccCcccCCCccHHHHHHHHHHHHHHcCC
Confidence 88888 88999995432 1235677888999999988765544432 122222211 268
Q ss_pred EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh------cHHHHHH-cCCcEEEEcccccCCCC
Q 023494 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------NAYKVIE-AGANALVAGSAVFGAKD 262 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e------~i~~~~~-aGAD~~VvGSaIf~a~d 262 (281)
+|=+ -.|+..+ ...++.+.++ .+-. ...++.+.||=+.. .+...++ +||..+++||.||+.++
T Consensus 204 IVKv--~y~~~~~-~g~~e~f~~v---v~~~----g~vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~~GRNIfQ~~~ 273 (304)
T PRK06852 204 FVKV--NYPKKEG-ANPAELFKEA---VLAA----GRTKVVCAGGSSTDPEEFLKQLYEQIHISGASGNATGRNIHQKPL 273 (304)
T ss_pred EEEe--cCCCcCC-CCCHHHHHHH---HHhC----CCCcEEEeCCCCCCHHHHHHHHHHHHHHcCCceeeechhhhcCCC
Confidence 7732 2343111 1223444443 2222 13578899998742 3445567 99999999999999988
Q ss_pred H--HHHHHHHHHh
Q 023494 263 Y--AEAIKGIKTS 273 (281)
Q Consensus 263 p--~~~~~~l~~~ 273 (281)
| .+.++.+...
T Consensus 274 p~~~~~~~Ai~~I 286 (304)
T PRK06852 274 DEAVRMCNAIYAI 286 (304)
T ss_pred chHHHHHHHHHHH
Confidence 8 7777777654
|
|
| >cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0081 Score=54.87 Aligned_cols=172 Identities=18% Similarity=0.202 Sum_probs=104.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC----cc--cccccCCHHHHHHcCcC-CCCCeeEEEE--ecChhhHHHHHHHcCCCE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG----RF--VPNITIGPLVVDALRPV-TDLPLDVHLM--IVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG----~f--vpn~~~G~~~I~~ir~~-t~~~idaHLm--v~dp~~~i~~~~~aGAd~ 141 (281)
...+.++.+.+.|++++++--..+ .| .|...-..+.++.+++. .+..+.+-+- ..+ .+.++.+.++|+|.
T Consensus 23 ~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~~~~~~~~-~~~i~~a~~~g~~~ 101 (263)
T cd07943 23 QVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVLLLPGIGT-VDDLKMAADLGVDV 101 (263)
T ss_pred HHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEEecCCccC-HHHHHHHHHcCCCE
Confidence 445666788899999998853221 11 12122244677777553 3344433110 223 24678889999998
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+.+-........+.+.++.+|+.|.++.+.+ ...++.+.+.++.+. +|.|.+ +-..|.....++.+.++
T Consensus 102 iri~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~DT~G~~~P~~v~~lv~ 177 (263)
T cd07943 102 VRVATHCTEADVSEQHIGAARKLGMDVVGFLMMSHMASPEELAEQAKLMESYGADCVYV----TDSAGAMLPDDVRERVR 177 (263)
T ss_pred EEEEechhhHHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHHcCCCEEEE----cCCCCCcCHHHHHHHHH
Confidence 8765433123457889999999999887766 333455555554432 677754 33345444444455566
Q ss_pred HHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 215 DLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.+++.++. .+|.+ |=|....|.-..+++|||.+
T Consensus 178 ~l~~~~~~----~~l~~H~Hn~~GlA~AN~laAi~aGa~~v 214 (263)
T cd07943 178 ALREALDP----TPVGFHGHNNLGLAVANSLAAVEAGATRI 214 (263)
T ss_pred HHHHhCCC----ceEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 66654431 35665 66777778888999999975
|
4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate |
| >PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0066 Score=56.49 Aligned_cols=166 Identities=16% Similarity=0.175 Sum_probs=105.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcc-----cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRF-----VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~f-----vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+..+.++.|.+.|++.|++ |.| +|..+--.+.++.|++..+..+-+ ++.+.. -++.+.++|.|.|.+-
T Consensus 27 ~k~~ia~~L~~~Gv~~IEv----gsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~--l~~~~~-~ie~A~~~g~~~v~i~ 99 (287)
T PRK05692 27 DKIALIDRLSAAGLSYIEV----ASFVSPKWVPQMADAAEVMAGIQRRPGVTYAA--LTPNLK-GLEAALAAGADEVAVF 99 (287)
T ss_pred HHHHHHHHHHHcCCCEEEe----CCCcCcccccccccHHHHHHhhhccCCCeEEE--EecCHH-HHHHHHHcCCCEEEEE
Confidence 3445667788999999988 445 444433356677776543333332 344433 4688899999988877
Q ss_pred cccc--------------ccccHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHhhcc-----CCEEEEEeecC
Q 023494 146 CEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNP 198 (281)
Q Consensus 146 ~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p---~t~ie~~~~~l~~-----vD~IlvmsV~p 198 (281)
.-.. ..+.+.+.++.+|+.|+++...+. | .++.+.+.++.+. +|.|.+ +
T Consensus 100 ~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~G~d~i~l----~ 175 (287)
T PRK05692 100 ASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISL----G 175 (287)
T ss_pred EecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHHHHHHHHcCCcEEEe----c
Confidence 4431 011356788999999998754322 2 2355555555442 676654 2
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
-..|.....++.+.++.+++.++ +.+|.+ |-|....|.-..+++|||.+
T Consensus 176 DT~G~~~P~~v~~lv~~l~~~~~----~~~i~~H~Hn~~Gla~AN~laA~~aG~~~i 228 (287)
T PRK05692 176 DTIGVGTPGQVRAVLEAVLAEFP----AERLAGHFHDTYGQALANIYASLEEGITVF 228 (287)
T ss_pred cccCccCHHHHHHHHHHHHHhCC----CCeEEEEecCCCCcHHHHHHHHHHhCCCEE
Confidence 33454444555666777776543 245666 77888889999999999987
|
|
| >PRK02506 dihydroorotate dehydrogenase 1A; Reviewed | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.005 Score=57.85 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=104.3
Q ss_pred CCCCeeEEEEecChhhHHHH---HHHcC-CCEEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCCCH
Q 023494 114 TDLPLDVHLMIVEPEQRVPD---FIKAG-ADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSL 178 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~---~~~aG-Ad~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t~i 178 (281)
.+.|+.+.++-.++++|.+. +.++| ||++-+-.-+. +.+.+.++++.+++. .+-+.+=+.|+.+.
T Consensus 91 ~~~pvI~Si~G~~~~~~~~~a~~~~~~g~ad~iElN~ScPn~~~~~~~g~d~~~~~~i~~~v~~~~~~Pv~vKlsp~~~~ 170 (310)
T PRK02506 91 PNKPHFLSVVGLSPEETHTILKKIQASDFNGLVELNLSCPNVPGKPQIAYDFETTEQILEEVFTYFTKPLGVKLPPYFDI 170 (310)
T ss_pred CCCCEEEEEEeCcHHHHHHHHHHHhhcCCCCEEEEECCCCCCCCccccccCHHHHHHHHHHHHHhcCCccEEecCCCCCH
Confidence 35899999988899877543 44577 99998754321 013356777888764 45677788888776
Q ss_pred HHHHHhhc-----cCCEEEE-------EeecC--------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 179 SAIECVLD-----VVDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 179 e~~~~~l~-----~vD~Ilv-------msV~p--------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
..+.+... .+|.|.. |.+++ |.+|....|..+..+.++++... .+++|..-
T Consensus 171 ~~~a~~~~~~~~~g~~~i~~~nt~~~~~~iD~~~~~~~~~~~~~~GGlSG~~i~p~al~~v~~~~~~~~---~~ipIig~ 247 (310)
T PRK02506 171 VHFDQAAAIFNKFPLAFVNCINSIGNGLVIDPEDETVVIKPKNGFGGIGGDYIKPTALANVRAFYQRLN---PSIQIIGT 247 (310)
T ss_pred HHHHHHHHHhCcCceEEEEEeccCCCceEEecCCCCccccCCCCCCcCCchhccHHHHHHHHHHHHhcC---CCCCEEEE
Confidence 55554332 1333211 12211 12455567888888888877653 24789999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCC-C-CHHHHHHHHHHhcC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGA-K-DYAEAIKGIKTSKR 275 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~-dp~~~~~~l~~~~~ 275 (281)
|||. .+.+-+++.+|||.+=+||+++.. . -..+..++|.+.++
T Consensus 248 GGI~s~~da~e~i~aGA~~Vqv~ta~~~~gp~~~~~i~~~L~~~l~ 293 (310)
T PRK02506 248 GGVKTGRDAFEHILCGASMVQVGTALHKEGPAVFERLTKELKAIMA 293 (310)
T ss_pred CCCCCHHHHHHHHHcCCCHHhhhHHHHHhChHHHHHHHHHHHHHHH
Confidence 9998 889999999999999999998752 2 23344455555443
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0035 Score=59.03 Aligned_cols=140 Identities=10% Similarity=0.131 Sum_probs=94.2
Q ss_pred CCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHHc---CCcEEEEEC
Q 023494 115 DLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL---GAKAGVVLN 173 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~---G~k~Glai~ 173 (281)
+.|+.+.|.-+||+.+.+ .+.+.|+|.|=+|.-+. ..+-+.++++.+++. ++.+.+=+.
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IdiN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvKiR 141 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGVDLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVKVR 141 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEEEE
Confidence 479999999999998765 45678999999996542 011255677777764 366777665
Q ss_pred CCCC-HH---HHHHhhcc--CCEEEEEeecCCCCCCccchh--HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH
Q 023494 174 PATS-LS---AIECVLDV--VDLVLIMSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244 (281)
Q Consensus 174 p~t~-ie---~~~~~l~~--vD~IlvmsV~pG~~GQ~f~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~ 244 (281)
.+.. .+ .+.+.+.. +|.|.+ |++...|.+... -++.++++++.. ++++..-|||+ ++.+.+++
T Consensus 142 ~g~~~~~~~~~~a~~l~~~Gvd~i~V---h~Rt~~~~y~g~~~~~~~i~~ik~~~-----~iPVi~nGdI~t~~da~~~l 213 (312)
T PRK10550 142 LGWDSGERKFEIADAVQQAGATELVV---HGRTKEDGYRAEHINWQAIGEIRQRL-----TIPVIANGEIWDWQSAQQCM 213 (312)
T ss_pred CCCCCchHHHHHHHHHHhcCCCEEEE---CCCCCccCCCCCcccHHHHHHHHhhc-----CCcEEEeCCcCCHHHHHHHH
Confidence 5432 12 22233332 788754 665555544322 245666666543 47898999995 88999876
Q ss_pred -HcCCcEEEEcccccCCCC
Q 023494 245 -EAGANALVAGSAVFGAKD 262 (281)
Q Consensus 245 -~aGAD~~VvGSaIf~a~d 262 (281)
..|+|.+-+|++.+..+.
T Consensus 214 ~~~g~DgVmiGRg~l~nP~ 232 (312)
T PRK10550 214 AITGCDAVMIGRGALNIPN 232 (312)
T ss_pred hccCCCEEEEcHHhHhCcH
Confidence 589999999999876543
|
|
| >PRK09016 quinolinate phosphoribosyltransferase; Validated | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00074 Score=63.04 Aligned_cols=86 Identities=16% Similarity=0.302 Sum_probs=60.5
Q ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 154 i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
+.+.++.+|+.- .+ +.+...| ++.+.+.++. +|.|++ + .|.|+.+ +++.++++. ++.|+
T Consensus 195 i~~av~~~r~~~~~~k--IeVEv~s-leea~ea~~~gaDiI~L-------D--n~s~e~~---~~av~~~~~---~~~ie 256 (296)
T PRK09016 195 IRQAVEKAFWLHPDVP--VEVEVEN-LDELDQALKAGADIIML-------D--NFTTEQM---REAVKRTNG---RALLE 256 (296)
T ss_pred HHHHHHHHHHhCCCCC--EEEEeCC-HHHHHHHHHcCCCEEEe-------C--CCChHHH---HHHHHhhcC---CeEEE
Confidence 567777777653 45 4444444 6677777664 899976 2 2545444 444444432 57899
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
+.||||++|+.++.+.|+|++++|+-.
T Consensus 257 aSGGI~~~ni~~yA~tGVD~Is~galt 283 (296)
T PRK09016 257 VSGNVTLETLREFAETGVDFISVGALT 283 (296)
T ss_pred EECCCCHHHHHHHHhcCCCEEEeCccc
Confidence 999999999999999999999999743
|
|
| >PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.001 Score=61.75 Aligned_cols=90 Identities=18% Similarity=0.292 Sum_probs=63.9
Q ss_pred cHHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 153 HLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 153 ~i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.+.+.++.+|+.. .++-+-.. .++.+.+.++ .+|.|++ .+|.|+.+ +++.+++++ ...
T Consensus 178 ~i~~av~~~r~~~~~~~kIeVEv~---slee~~ea~~~gaDiImL---------Dn~s~e~l---~~av~~~~~---~~~ 239 (281)
T PRK06543 178 DLTEALRHVRAQLGHTTHVEVEVD---RLDQIEPVLAAGVDTIML---------DNFSLDDL---REGVELVDG---RAI 239 (281)
T ss_pred HHHHHHHHHHHhCCCCCcEEEEeC---CHHHHHHHHhcCCCEEEE---------CCCCHHHH---HHHHHHhCC---CeE
Confidence 3667778888762 45555553 5666666655 4999986 23656554 444444443 357
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|++.||||++|+.++.+.|+|++++|+-..+.
T Consensus 240 leaSGgI~~~ni~~yA~tGVD~Is~galths~ 271 (281)
T PRK06543 240 VEASGNVNLNTVGAIASTGVDVISVGALTHSV 271 (281)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 99999999999999999999999999866554
|
|
| >PRK09427 bifunctional indole-3-glycerol phosphate synthase/phosphoribosylanthranilate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.013 Score=58.00 Aligned_cols=166 Identities=19% Similarity=0.192 Sum_probs=102.7
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCCCCCeeEEEEec-ChhhHHHHHHHcCCCEEEEcccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t~~~idaHLmv~-dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+.++.+.+.|+|++=+ + |.|.- ...++..+.|.+..+... |=+.++ +|....+.+.+++.|++-+|...
T Consensus 268 eda~~a~~~GaD~lGf--I---f~~~SpR~V~~~~a~~i~~~l~v~~-VgVfv~~~~~~i~~i~~~~~lD~vQLHG~e-- 339 (454)
T PRK09427 268 QDAKAAYDAGAVYGGL--I---FVEKSPRYVSLEQAQEIIAAAPLRY-VGVFRNADIEDIVDIAKQLSLAAVQLHGDE-- 339 (454)
T ss_pred HHHHHHHhCCCCEEee--E---eCCCCCCCCCHHHHHHHHHhCCCCE-EEEEeCCCHHHHHHHHHHcCCCEEEeCCCC--
Confidence 3456677789998744 1 32321 245777777765422222 333554 44445566778999999999863
Q ss_pred cccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCC
Q 023494 151 TIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227 (281)
Q Consensus 151 ~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~ 227 (281)
++ +.++.+++ .++++.-++...+... ..++ ..+|++++=+ .+|-+|+.|.-..+. ... ..
T Consensus 340 --~~-~~~~~l~~~~~~~~~iikai~v~~~~~-~~~~-~~~d~~LlDs-~~GGtG~~~DW~~l~------~~~-----~~ 402 (454)
T PRK09427 340 --DQ-AYIDALREALPKTCQIWKAISVGDTLP-ARDL-QHVDRYLLDN-GQGGTGQTFDWSLLP------GQS-----LD 402 (454)
T ss_pred --CH-HHHHHHHhhcCCCCeEEEEeecCchhh-hhhh-cCCCEEEEcC-CCCCCCCccChHHhh------hcc-----cC
Confidence 12 34556665 2466666776644332 2222 2479988754 446568887643321 111 24
Q ss_pred eEEEecCCChhcHHHHHHcCCcEEEEcccccCC---CCHH
Q 023494 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 228 ~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a---~dp~ 264 (281)
++.+.||+|++|+.+++..++.++=+-|.+=.. .|+.
T Consensus 403 p~iLAGGL~peNV~~ai~~~P~gVDVsSGVE~~pG~KD~~ 442 (454)
T PRK09427 403 NVLLAGGLNPDNCQQAAQLGCAGLDFNSGVESAPGIKDAQ 442 (454)
T ss_pred CEEEECCCCHHHHHHHHhcCCCEEEeCCcccCCCCCcCHH
Confidence 677999999999999988889888887777532 4654
|
|
| >cd04732 HisA HisA | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00044 Score=61.53 Aligned_cols=79 Identities=10% Similarity=0.252 Sum_probs=56.8
Q ss_pred CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 174 PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 174 p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
...|++..+.|.+ .+|.+.+...+..+.++......+ +++++.. +.++.++|||+ ++.+.++.++|||.+
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i---~~i~~~~-----~~pv~~~GgI~~~e~~~~~~~~Gad~v 99 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELI---EEIVKAV-----GIPVQVGGGIRSLEDIERLLDLGVSRV 99 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHH---HHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEE
Confidence 3456666666654 378887776665555555554444 4444432 36899999999 799999999999999
Q ss_pred EEcccccCC
Q 023494 252 VAGSAVFGA 260 (281)
Q Consensus 252 VvGSaIf~a 260 (281)
++|++.+..
T Consensus 100 vigs~~l~d 108 (234)
T cd04732 100 IIGTAAVKN 108 (234)
T ss_pred EECchHHhC
Confidence 999998854
|
Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. |
| >PRK14041 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0056 Score=60.69 Aligned_cols=173 Identities=17% Similarity=0.172 Sum_probs=110.7
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC-cccccccC----CHHHHHHcCcC-CCCCeeEEEEecChh-----------hHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITI----GPLVVDALRPV-TDLPLDVHLMIVEPE-----------QRVP 132 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~----G~~~I~~ir~~-t~~~idaHLmv~dp~-----------~~i~ 132 (281)
.+..+.++.+.++|++.|++- -| +|--...| -.+.++.+++. ++.++.+.+-..|.. .+++
T Consensus 25 ~dkl~Ia~~Ld~~Gv~~IE~~--ggatfd~~~~Fl~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~~dDvv~~fv~ 102 (467)
T PRK14041 25 EDMLPALEAFDRMGFYSMEVW--GGATFDVCVRFLNENPWERLKEIRKRLKNTKIQMLLRGQNLVGYRHYADDVVELFVK 102 (467)
T ss_pred HHHHHHHHHHHHcCCCEEEec--CCccchhhhcccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccccchhhHHHHH
Confidence 344556677888899988773 11 11111111 24667777765 566676655554432 2478
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCC
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ 203 (281)
.+.++|+|.+.+-.......++...++.+|+.|+.+...+ .|..+.+.+.++.+. +|.|.+ .-..|.
T Consensus 103 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~e~~~~~a~~l~~~Gad~I~i----~Dt~G~ 178 (467)
T PRK14041 103 KVAEYGLDIIRIFDALNDIRNLEKSIEVAKKHGAHVQGAISYTVSPVHTLEYYLEFARELVDMGVDSICI----KDMAGL 178 (467)
T ss_pred HHHHCCcCEEEEEEeCCHHHHHHHHHHHHHHCCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCccCC
Confidence 8899999988777544234568889999999999887544 455566655555432 677655 223454
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
....++.+.++.+++.+ +++|.+ |-|....|.-..+++|||++=+
T Consensus 179 l~P~~v~~Lv~~lk~~~-----~vpI~~H~Hnt~GlA~AN~laAieaGad~vD~ 227 (467)
T PRK14041 179 LTPKRAYELVKALKKKF-----GVPVEVHSHCTTGLASLAYLAAVEAGADMFDT 227 (467)
T ss_pred cCHHHHHHHHHHHHHhc-----CCceEEEecCCCCcHHHHHHHHHHhCCCEEEe
Confidence 44445556677776654 246665 7888888999999999998643
|
|
| >TIGR00736 nifR3_rel_arch TIM-barrel protein, putative | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0057 Score=55.29 Aligned_cols=175 Identities=16% Similarity=0.171 Sum_probs=111.3
Q ss_pred eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHH--HHHcC
Q 023494 65 LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPD--FIKAG 138 (281)
Q Consensus 65 la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~--~~~aG 138 (281)
+++|.... ++-+.+.+-|-+- |.+|. .+=.+.+..++ .+.++.+-+-..+|+.|.+. ..+.+
T Consensus 25 ~~~d~~t~-~a~~~~~~rgr~e---------f~~~~e~~~~~i~~e~~~~~--~~~~vivnv~~~~~ee~~~~a~~v~~~ 92 (231)
T TIGR00736 25 YNADRATY-KASRDIEKRGRKE---------FSFNLEEFNSYIIEQIKKAE--SRALVSVNVRFVDLEEAYDVLLTIAEH 92 (231)
T ss_pred ccCCHHHH-HHHHHHHHcCCcc---------cCcCcccHHHHHHHHHHHHh--hcCCEEEEEecCCHHHHHHHHHHHhcC
Confidence 44554333 4445555555443 34443 22233444444 34688888888999988654 34568
Q ss_pred CCEEEEccccc---------------ccccHHHHHHHHHHcCCcEEEEECCCCCH-H--HHHHhhc--cCCEEEEEeecC
Q 023494 139 ADIVSVHCEQS---------------STIHLHRTLNQIKDLGAKAGVVLNPATSL-S--AIECVLD--VVDLVLIMSVNP 198 (281)
Q Consensus 139 Ad~Itvh~Ea~---------------~~~~i~~~l~~ik~~G~k~Glai~p~t~i-e--~~~~~l~--~vD~IlvmsV~p 198 (281)
+|+|-+-.-+. ..+.+.++++.+++.++.+.+=+.++.+. + .+...+. .+|.|.+ +.
T Consensus 93 ~d~IdiN~gCP~~~v~~~g~G~~Ll~dp~~l~~iv~av~~~~~PVsvKiR~~~~~~~~~~~a~~l~~aGad~i~V---d~ 169 (231)
T TIGR00736 93 ADIIEINAHCRQPEITEIGIGQELLKNKELLKEFLTKMKELNKPIFVKIRGNCIPLDELIDALNLVDDGFDGIHV---DA 169 (231)
T ss_pred CCEEEEECCCCcHHHcCCCCchhhcCCHHHHHHHHHHHHcCCCcEEEEeCCCCCcchHHHHHHHHHHcCCCEEEE---ee
Confidence 99988754331 12236677888888888888888876432 1 2222222 3888866 44
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.|.+. ..++.|+++++-++ +++|..-|||. .+.+.+++++|||.+-+|+++++.
T Consensus 170 ~~~g~~~--a~~~~I~~i~~~~~----~ipIIgNGgI~s~eda~e~l~~GAd~VmvgR~~l~~ 226 (231)
T TIGR00736 170 MYPGKPY--ADMDLLKILSEEFN----DKIIIGNNSIDDIESAKEMLKAGADFVSVARAILKG 226 (231)
T ss_pred CCCCCch--hhHHHHHHHHHhcC----CCcEEEECCcCCHHHHHHHHHhCCCeEEEcHhhccC
Confidence 4444322 34677777776542 26788899998 899999999999999999998753
|
Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins. |
| >PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0012 Score=61.31 Aligned_cols=89 Identities=18% Similarity=0.297 Sum_probs=63.6
Q ss_pred HHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|++. .++-+-.. .++++.+.++ .+|.|++ + .|.|+ .++++.++++. ..++
T Consensus 180 i~~ai~~~r~~~~~~~kIeVEv~---tleea~ea~~~gaDiI~L-------D--n~s~e---~l~~av~~~~~---~~~l 241 (281)
T PRK06106 180 VREAIRRARAGVGHLVKIEVEVD---TLDQLEEALELGVDAVLL-------D--NMTPD---TLREAVAIVAG---RAIT 241 (281)
T ss_pred HHHHHHHHHHhCCCCCcEEEEeC---CHHHHHHHHHcCCCEEEe-------C--CCCHH---HHHHHHHHhCC---CceE
Confidence 667888888763 45555554 5556666665 4999976 2 24444 44555555443 3579
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|++++.+.|+|++++|+-..++
T Consensus 242 eaSGGI~~~ni~~yA~tGVD~Is~Galthsa 272 (281)
T PRK06106 242 EASGRITPETAPAIAASGVDLISVGWLTHSA 272 (281)
T ss_pred EEECCCCHHHHHHHHhcCCCEEEeChhhcCC
Confidence 9999999999999999999999999866644
|
|
| >PLN02826 dihydroorotate dehydrogenase | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.018 Score=56.32 Aligned_cols=192 Identities=21% Similarity=0.254 Sum_probs=122.7
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc----------------------cc---cCCHHHH-HHcCcCC
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP----------------------NI---TIGPLVV-DALRPVT 114 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp----------------------n~---~~G~~~I-~~ir~~t 114 (281)
.|-.+++=+.+-.+++..+.+.|...+++ |+.+| .+ ..|.+.+ +.+++..
T Consensus 85 NPvglAAG~dkn~~~~~~l~~lGfG~vev----gTVT~~pq~GNp~PR~frl~~~~aiiN~~Gfnn~G~~~~~~~l~~~~ 160 (409)
T PLN02826 85 NPIGLAAGFDKNAEAVEGLLGLGFGFVEI----GSVTPLPQPGNPKPRVFRLREEGAIINRYGFNSEGIVAVAKRLGAQH 160 (409)
T ss_pred CCCEECcccCCCHHHHHHHHhcCCCeEEe----CCccCCCCCCCCCCcEEecCCCceeEecCCCCCcCHHHHHHHHHHHh
Confidence 46677776677778899988889888887 33322 11 2354443 4443211
Q ss_pred -------------------------CCCeeEEEEec-----ChhhHHHHHHHcC--CCEEEEcccccc---------ccc
Q 023494 115 -------------------------DLPLDVHLMIV-----EPEQRVPDFIKAG--ADIVSVHCEQSS---------TIH 153 (281)
Q Consensus 115 -------------------------~~~idaHLmv~-----dp~~~i~~~~~aG--Ad~Itvh~Ea~~---------~~~ 153 (281)
+.++-+-+--+ .+.+|.+.+..++ ||++.+-.-+.. .+.
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lgvnIg~nk~~~~~~~Dy~~~~~~~~~~aDylelNiScPNtpglr~lq~~~~ 240 (409)
T PLN02826 161 GKRKLDETSSSSFSSDDVKAGGKAGPGILGVNLGKNKTSEDAAADYVQGVRALSQYADYLVINVSSPNTPGLRKLQGRKQ 240 (409)
T ss_pred hhcccccccccccccccccccccccCceEEEEeccCCCCcccHHHHHHHHHHHhhhCCEEEEECCCCCCCCcccccChHH
Confidence 11455544323 3567876665554 999998754321 123
Q ss_pred HHHHHHHHHHc----------CCcEEEEECCCCCHHHHHHhhc-----cCCEEEEEe------e---------c-CCCCC
Q 023494 154 LHRTLNQIKDL----------GAKAGVVLNPATSLSAIECVLD-----VVDLVLIMS------V---------N-PGFGG 202 (281)
Q Consensus 154 i~~~l~~ik~~----------G~k~Glai~p~t~ie~~~~~l~-----~vD~Ilvms------V---------~-pG~~G 202 (281)
+.++++.+++. .+.+.+=+.|+.+.+.+.++++ .+|-|.+-- . . -|.+|
T Consensus 241 l~~ll~~V~~~~~~~~~~~~~~~Pv~vKlaPdl~~~di~~ia~~a~~~G~dGIi~~NTt~~r~~dl~~~~~~~~~GGlSG 320 (409)
T PLN02826 241 LKDLLKKVLAARDEMQWGEEGPPPLLVKIAPDLSKEDLEDIAAVALALGIDGLIISNTTISRPDSVLGHPHADEAGGLSG 320 (409)
T ss_pred HHHHHHHHHHHHHHhhhccccCCceEEecCCCCCHHHHHHHHHHHHHcCCCEEEEEcccCcCccchhcccccccCCCcCC
Confidence 45666666522 3455666888876555444433 277765431 0 1 13567
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+..+.+++.|+++++.... +++|..+|||. .+++-+.+.+||+.+=+||+++-
T Consensus 321 ~pl~~~sl~~v~~l~~~~~~---~ipIIgvGGI~sg~Da~e~i~AGAs~VQv~Ta~~~ 375 (409)
T PLN02826 321 KPLFDLSTEVLREMYRLTRG---KIPLVGCGGVSSGEDAYKKIRAGASLVQLYTAFAY 375 (409)
T ss_pred ccccHHHHHHHHHHHHHhCC---CCcEEEECCCCCHHHHHHHHHhCCCeeeecHHHHh
Confidence 77778888888888877642 47899999999 77999999999999999999764
|
|
| >PRK14567 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.003 Score=57.79 Aligned_cols=139 Identities=17% Similarity=0.242 Sum_probs=87.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH------------HHHHhhccCCE
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS------------AIECVLDVVDL 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie------------~~~~~l~~vD~ 190 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+.+-+-+.- |.-+ .+...++.++.
T Consensus 78 ~~mLkd~G~~yviiGHSERR~~f~E--td~~v~~Kv~~al~~gl~pI~CiGE-t~eere~g~~~~vv~~Ql~~~l~~i~~ 154 (253)
T PRK14567 78 ARMLEDIGCDYLLIGHSERRSLFAE--SDEDVFKKLNKIIDTTITPVVCIGE-SLDDRQSGKLKQVLATQLSLILENLSV 154 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCC--CHHHHHHHHHHHHHCCCEEEEEcCC-cHHHHHcCCHHHHHHHHHHHHHccCCH
Confidence 568899999999875 34 2455677778888999998887752 2111 12223322211
Q ss_pred ----EEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc----CCCCeEEEecCCChhcHHHHHHcC-CcEEEEcccc
Q 023494 191 ----VLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAV 257 (281)
Q Consensus 191 ----IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~----~~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaI 257 (281)
=++..-+|-+ +|+.-.|+..++ .+.+|+.+.+. ..+++|.-.|+|+++|+.++.+.+ +|++-+|++.
T Consensus 155 ~~~~~ivIAYEPvWAIGTG~~as~e~i~~~~~~IR~~l~~~~~~~a~~v~IlYGGSV~~~N~~~l~~~~diDG~LVGgas 234 (253)
T PRK14567 155 EQLAKVVIAYEPVWAIGTGVVASLEQIQETHQFIRSLLAKVDERLAKNIKIVYGGSLKAENAKDILSLPDVDGGLIGGAS 234 (253)
T ss_pred HHhCCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhhcccccccceEEEcCcCCHHHHHHHHcCCCCCEEEeehhh
Confidence 0223346633 354433443332 23344443221 235788899999999999998888 9999999999
Q ss_pred cCCCCHHHHHHHHHH
Q 023494 258 FGAKDYAEAIKGIKT 272 (281)
Q Consensus 258 f~a~dp~~~~~~l~~ 272 (281)
.+.+++.+-++...+
T Consensus 235 L~~~~F~~Ii~~~~~ 249 (253)
T PRK14567 235 LKAAEFNEIINQANK 249 (253)
T ss_pred hcHHHHHHHHHHHHh
Confidence 887777766665443
|
|
| >PRK08185 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.016 Score=53.97 Aligned_cols=181 Identities=14% Similarity=0.144 Sum_probs=112.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
|+..+.-.++.+++.+...| +-+-.|+ |.+ ..+. .+++.+.+....|+.+||==..-.+.++.+.++|.+.|-+=
T Consensus 22 n~e~~~avi~AAee~~sPvI-l~~~~~~~~~~~-~~~~-~~~~~~a~~~~vPV~lHLDHg~~~e~i~~ai~~Gf~SVM~D 98 (283)
T PRK08185 22 DSCFLRAVVEEAEANNAPAI-IAIHPNELDFLG-DNFF-AYVRERAKRSPVPFVIHLDHGATIEDVMRAIRCGFTSVMID 98 (283)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEeCcchhhhcc-HHHH-HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEEe
Confidence 44444556677788887765 5544443 222 1222 22333333456899999855444457888999999887776
Q ss_pred ccccccc-c---HHHHHHHHHHcCCcE----EEEEC----------C--CCCHHHHHHhhcc--CCEEEE-----EeecC
Q 023494 146 CEQSSTI-H---LHRTLNQIKDLGAKA----GVVLN----------P--ATSLSAIECVLDV--VDLVLI-----MSVNP 198 (281)
Q Consensus 146 ~Ea~~~~-~---i~~~l~~ik~~G~k~----Glai~----------p--~t~ie~~~~~l~~--vD~Ilv-----msV~p 198 (281)
.-..+.+ + -.++++.++++|+.+ |..=. . -|+.+...++... +|++.+ +++++
T Consensus 99 ~S~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea~~f~~~TgvD~LAvaiGt~HG~y~ 178 (283)
T PRK08185 99 GSLLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQAEDFVSRTGVDTLAVAIGTAHGIYP 178 (283)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHHHHHHHhhCCCEEEeccCcccCCcC
Confidence 4432221 2 335566667777654 33101 0 3466666777664 999877 44433
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+-..... .+++|+++++.. ++++..=||++ .+.++++++.|+.-+=+++.+..
T Consensus 179 ~~~kp~L---~~e~l~~I~~~~-----~iPLVlHGgsg~~~e~~~~ai~~GI~KiNi~T~l~~ 233 (283)
T PRK08185 179 KDKKPEL---QMDLLKEINERV-----DIPLVLHGGSANPDAEIAESVQLGVGKINISSDMKY 233 (283)
T ss_pred CCCCCCc---CHHHHHHHHHhh-----CCCEEEECCCCCCHHHHHHHHHCCCeEEEeChHHHH
Confidence 2111112 277777777654 47899999987 67999999999999999998864
|
|
| >TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0041 Score=56.66 Aligned_cols=175 Identities=18% Similarity=0.182 Sum_probs=110.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
..++.+...|.|++-+|.-+|.+ +..-=...++..+. .+....|-+=-.++. .+..+.++|++.|.++.-. +.++
T Consensus 24 ~~~e~~~~~g~D~v~iDlEH~~~--~~~~~~~~~~a~~~-~g~~~~VRv~~~~~~-~i~~~Ld~Ga~gIivP~v~-s~e~ 98 (249)
T TIGR02311 24 YAAEICAGAGFDWLLIDGEHAPN--DVRTILSQLQALAP-YPSSPVVRPAIGDPV-LIKQLLDIGAQTLLVPMIE-TAEQ 98 (249)
T ss_pred HHHHHHHhcCCCEEEEeccCCCC--CHHHHHHHHHHHHh-cCCCcEEECCCCCHH-HHHHHhCCCCCEEEecCcC-CHHH
Confidence 55667778899999999999953 12111113333332 234445543234443 6788999999999988554 3667
Q ss_pred HHHHHHHHHHc--CCc---------------------------EEEEECCCCCHHHHHHhh--ccCCEEEEEe----ecC
Q 023494 154 LHRTLNQIKDL--GAK---------------------------AGVVLNPATSLSAIECVL--DVVDLVLIMS----VNP 198 (281)
Q Consensus 154 i~~~l~~ik~~--G~k---------------------------~Glai~p~t~ie~~~~~l--~~vD~Ilvms----V~p 198 (281)
.+++++.+|-. |.+ +...|....-++.+++++ +.+|.+.+.+ ..-
T Consensus 99 a~~~v~~~~y~P~G~Rg~~~~~~~~~~~~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~a~~gvd~l~~G~~DLs~sl 178 (249)
T TIGR02311 99 AEAAVAATRYPPMGIRGVGSALARASRWNRIPDYLQQADEEICVLLQVETREALDNLEEIAAVEGVDGVFIGPADLAASM 178 (249)
T ss_pred HHHHHHHcCCCCCCcCCCCCccchhhccCChHHHHHHhhhceEEEEEecCHHHHHHHHHHHCCCCCcEEEECHHHHHHhc
Confidence 88888887721 211 223343333456677766 4578888753 234
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
|..++...|+..+-++++++.+..++.. ..+ -.-+++.++.+++.|++.+++|+.
T Consensus 179 G~~~~~~~~~~~~a~~~v~~~~~~a~~~--~Gi-~~~~~~~~~~~~~~G~~~~~~~~D 233 (249)
T TIGR02311 179 GHLGNPSHPEVQAAIDDAIERIKAAGKA--AGI-LTADPKLARQYLKLGALFVAVGVD 233 (249)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHcCCc--eee-cCCCHHHHHHHHHcCCCEEEEchH
Confidence 5556555676677777777777665432 222 234578899999999999999965
|
This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon. |
| >COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0049 Score=56.24 Aligned_cols=137 Identities=18% Similarity=0.270 Sum_probs=87.9
Q ss_pred HHHHHHcCCCEEEEc-cc-----ccccccHHHHHHHHHHcCCcEEEEECCCCC--------H----HHHHHhhccC----
Q 023494 131 VPDFIKAGADIVSVH-CE-----QSSTIHLHRTLNQIKDLGAKAGVVLNPATS--------L----SAIECVLDVV---- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~E-----a~~~~~i~~~l~~ik~~G~k~Glai~p~t~--------i----e~~~~~l~~v---- 188 (281)
.+++.++|++++.+. -| ..+++.+..-+++++++|+.+.+=+. +|. . ..+...+...
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~~~E~d~~i~~K~~aa~~~Gl~pIlCvG-Etl~~reag~t~~v~~~Ql~~~l~~l~~~~ 159 (251)
T COG0149 81 AEMLKDLGAKYVLIGHSERRLYFGETDELIAKKVKAAKEAGLTPILCVG-ETLEEREAGKTLEVLKRQLAAALAALSPEA 159 (251)
T ss_pred HHHHHHcCCCEEEECccccccccccchHHHHHHHHHHHHCCCeEEEEcC-CCHHHHhccChHHHHHHHHHHHHhhcCccc
Confidence 567889999988874 22 11244577888899999999777664 233 0 1122223322
Q ss_pred -CEEEEEeecC----CCCCCccchhHHHH-HHHHHHHhhhc---CCCCeEEEecCCChhcHHHH-HHcCCcEEEEccccc
Q 023494 189 -DLVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK---GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVF 258 (281)
Q Consensus 189 -D~IlvmsV~p----G~~GQ~f~~~~l~k-I~~lr~l~~~~---~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf 258 (281)
++|. .+| | +|-+-.++..+. .+.+|..+.+. ..+++|.-.|||+++|+.++ .+.++|.+-+|++..
T Consensus 160 ~~vIA---YEPvWAIG-TG~~at~~~a~~v~~~Ir~~~~~~~~~~~~v~IlYGGSV~~~N~~e~~~~~~idG~LVGgAsl 235 (251)
T COG0149 160 NIVIA---YEPVWAIG-TGKSASPADAEEVHAFIRAVLAELFGAEEKVRILYGGSVKPGNAAELAAQPDIDGALVGGASL 235 (251)
T ss_pred CeEEE---ECCHHHhc-CCCCCCHHHHHHHHHHHHHHHHHhcCCCCCeEEEEeCCcChhHHHHHhcCCCCCeEEEcceee
Confidence 3443 455 5 343333333333 22333333321 13678999999999998865 788999999999999
Q ss_pred CCCCHHHHHHHHHH
Q 023494 259 GAKDYAEAIKGIKT 272 (281)
Q Consensus 259 ~a~dp~~~~~~l~~ 272 (281)
+++|+.+.++.+.+
T Consensus 236 ka~~f~~ii~~~~~ 249 (251)
T COG0149 236 KADDFLAILEALAK 249 (251)
T ss_pred cchhHHHHHHHHhh
Confidence 99999988877654
|
|
| >PRK12331 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0085 Score=59.18 Aligned_cols=172 Identities=17% Similarity=0.215 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-ccccc---ccC-CHHHHHHcCcC-CCCCeeEEEEecCh-----------hhHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPN---ITI-GPLVVDALRPV-TDLPLDVHLMIVEP-----------EQRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn---~~~-G~~~I~~ir~~-t~~~idaHLmv~dp-----------~~~i~~ 133 (281)
+..+.++.+.++|++.|++ .-| +|--. .+. ..+.++.+++. ++.++...+-..|. ..+++.
T Consensus 27 dkl~ia~~Ld~~Gv~~IE~--~ggatf~~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~r~~N~~G~~~~pddvv~~~v~~ 104 (448)
T PRK12331 27 EMLPILEKLDNAGYHSLEM--WGGATFDACLRFLNEDPWERLRKIRKAVKKTKLQMLLRGQNLLGYRNYADDVVESFVQK 104 (448)
T ss_pred HHHHHHHHHHHcCCCEEEe--cCCccchhhhccCCCCHHHHHHHHHHhCCCCEEEEEeccccccccccCchhhHHHHHHH
Confidence 4445566778889998877 222 12111 111 23567777765 56666554543333 235778
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~ 204 (281)
+.++|+|.+.+-.......++.+.++.+|+.|+.+.+.+ .|-++.+.+.++.. .+|.|.+- -..|..
T Consensus 105 A~~~Gvd~irif~~lnd~~n~~~~v~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~a~~l~~~Gad~I~i~----Dt~G~l 180 (448)
T PRK12331 105 SVENGIDIIRIFDALNDVRNLETAVKATKKAGGHAQVAISYTTSPVHTIDYFVKLAKEMQEMGADSICIK----DMAGIL 180 (448)
T ss_pred HHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEEc----CCCCCC
Confidence 899999988777543234568889999999998865433 34445555544433 26777652 334543
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
....+.+.++.+++.+ +.+|.+ |-|....|.-..+++|||++=+
T Consensus 181 ~P~~v~~lv~alk~~~-----~~pi~~H~Hnt~GlA~AN~laAieaGad~vD~ 228 (448)
T PRK12331 181 TPYVAYELVKRIKEAV-----TVPLEVHTHATSGIAEMTYLKAIEAGADIIDT 228 (448)
T ss_pred CHHHHHHHHHHHHHhc-----CCeEEEEecCCCCcHHHHHHHHHHcCCCEEEe
Confidence 4445556677776654 357777 8899999999999999998643
|
|
| >cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0035 Score=57.01 Aligned_cols=133 Identities=17% Similarity=0.245 Sum_probs=85.6
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCHH------------HHHHhhccCCE--
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSLS------------AIECVLDVVDL-- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie------------~~~~~l~~vD~-- 190 (281)
.+++.++|++++.+. .|- .+.+.+.+-++.+.++|+++.+-+.- |.-+ .+...++.++.
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~Et~~~i~~Kv~~a~~~gl~pIvCiGE-~~~~r~~~~~~~~~~~Ql~~~l~~~~~~~ 155 (242)
T cd00311 77 AEMLKDAGAKYVIIGHSERRQYFGETDEDVAKKVKAALEAGLTPILCVGE-TLEEREAGKTEEVVAAQLAAVLAGVEDLA 155 (242)
T ss_pred HHHHHHcCCCEEEeCcccccCcCCCCcHHHHHHHHHHHHCCCEEEEEeCC-CHHHHHcCCHHHHHHHHHHHHHhcchhhc
Confidence 678899999998885 221 13567888888899999998887752 2211 12222222110
Q ss_pred EEEEeecCCC---CCCccchh-HHHHHHHHHHHhhhcC----CCCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCCC
Q 023494 191 VLIMSVNPGF---GGQSFIES-QVKKISDLRRMCLEKG----VNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGAK 261 (281)
Q Consensus 191 IlvmsV~pG~---~GQ~f~~~-~l~kI~~lr~l~~~~~----~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a~ 261 (281)
=+++.-+|=+ +|..-.++ .-+-++.+|+.+.+.. .+++|.-.|+|+++|+.++.+.+ +|++-+|++..+.+
T Consensus 156 ~~iIAYEPvWAIGtG~~as~~~~~ev~~~ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~~ 235 (242)
T cd00311 156 PVVIAYEPVWAIGTGKTASPEQAQEVHAFIRKLLAELYGEVAEKVRILYGGSVNPENAAELLAQPDIDGVLVGGASLKAE 235 (242)
T ss_pred CeEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCceeEEECCCCCHHHHHHHhcCCCCCEEEeehHhhCHH
Confidence 0223346622 35544444 3444566666665432 25788899999999999999999 99999999988655
Q ss_pred CHH
Q 023494 262 DYA 264 (281)
Q Consensus 262 dp~ 264 (281)
++.
T Consensus 236 ~f~ 238 (242)
T cd00311 236 SFL 238 (242)
T ss_pred HHH
Confidence 443
|
The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea. |
| >TIGR01108 oadA oxaloacetate decarboxylase alpha subunit | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0068 Score=61.69 Aligned_cols=172 Identities=18% Similarity=0.199 Sum_probs=109.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC-ccc---ccccC-CHHHHHHcCcC-CCCCeeEEEEecCh-------h----hHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG-RFV---PNITI-GPLVVDALRPV-TDLPLDVHLMIVEP-------E----QRVP 132 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG-~fv---pn~~~-G~~~I~~ir~~-t~~~idaHLmv~dp-------~----~~i~ 132 (281)
.+..+.++.+.++|++.|++- -| +|- +..+. -.+.++.+++. ++.++-+.+-..|. . .+++
T Consensus 21 ~dkl~ia~~L~~~Gv~~IE~~--GGatfd~~~~f~~e~~~e~l~~l~~~~~~~~l~~L~Rg~N~~G~~~ypddvv~~~v~ 98 (582)
T TIGR01108 21 EDMLPIAEKLDDVGYWSLEVW--GGATFDACIRFLNEDPWERLRELKKALPNTPLQMLLRGQNLLGYRHYADDVVERFVK 98 (582)
T ss_pred HHHHHHHHHHHHcCCCEEEec--CCcccccccccCCCCHHHHHHHHHHhCCCCEEEEEEccccccccccCchhhHHHHHH
Confidence 344556677788899988773 11 121 11111 24567888763 66666665433332 2 3577
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCC
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ 203 (281)
.+.++|.|.+.+-.......++...++.+|+.|+.+...+ +|-.+.+.+.++++. +|.|.+ .-..|-
T Consensus 99 ~a~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~~~~~~~~~~~~~~~~Gad~I~i----~Dt~G~ 174 (582)
T TIGR01108 99 KAVENGMDVFRIFDALNDPRNLQAAIQAAKKHGAHAQGTISYTTSPVHTLETYLDLAEELLEMGVDSICI----KDMAGI 174 (582)
T ss_pred HHHHCCCCEEEEEEecCcHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCC
Confidence 8899999988777543234678889999999999887653 443455555555432 677654 233344
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
.....+.+.++.+++.++ .+|.+ |-|....|.-..+++|||++=
T Consensus 175 ~~P~~v~~lv~~lk~~~~-----~pi~~H~Hnt~Gla~An~laAveaGa~~vd 222 (582)
T TIGR01108 175 LTPKAAYELVSALKKRFG-----LPVHLHSHATTGMAEMALLKAIEAGADGID 222 (582)
T ss_pred cCHHHHHHHHHHHHHhCC-----CceEEEecCCCCcHHHHHHHHHHhCCCEEE
Confidence 444455666777776542 45554 889998899999999999763
|
This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane. |
| >cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS) | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0078 Score=56.90 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=96.7
Q ss_pred HHHHcCcC-CCCCeeEEEEec--Ch--hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH
Q 023494 106 VVDALRPV-TDLPLDVHLMIV--EP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA 180 (281)
Q Consensus 106 ~I~~ir~~-t~~~idaHLmv~--dp--~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~ 180 (281)
.++.+|+. +++||-+-|+.. +| ...++.+.+.++..|+++.-. +.. ++.+|+.|+++.... ++++.
T Consensus 45 ~i~~~~~l~tdkPfGVnl~~~~~~~~~~~~l~vi~e~~v~~V~~~~G~-----P~~-~~~lk~~Gi~v~~~v---~s~~~ 115 (320)
T cd04743 45 LLEETAELLGDKPWGVGILGFVDTELRAAQLAVVRAIKPTFALIAGGR-----PDQ-ARALEAIGISTYLHV---PSPGL 115 (320)
T ss_pred HHHHHHHhccCCCeEEEEeccCCCcchHHHHHHHHhcCCcEEEEcCCC-----hHH-HHHHHHCCCEEEEEe---CCHHH
Confidence 45566774 789999999764 33 246777889999999999653 223 588899999988655 35555
Q ss_pred HHHhhc-cCCEEEEEeecCCC-CCC--cc--chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCC-----
Q 023494 181 IECVLD-VVDLVLIMSVNPGF-GGQ--SF--IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA----- 248 (281)
Q Consensus 181 ~~~~l~-~vD~IlvmsV~pG~-~GQ--~f--~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGA----- 248 (281)
.+...+ .+|.|.+-..+.|- .|. .| .|+.++.+... ..+....++++...|||. -..+..+...||
T Consensus 116 A~~a~~~GaD~vVaqG~EAGGH~G~~~t~~L~~~v~~~l~~~--~~~~~~~~iPViAAGGI~dgr~~aaalaLGA~~~~~ 193 (320)
T cd04743 116 LKQFLENGARKFIFEGRECGGHVGPRSSFVLWESAIDALLAA--NGPDKAGKIHLLFAGGIHDERSAAMVSALAAPLAER 193 (320)
T ss_pred HHHHHHcCCCEEEEecCcCcCCCCCCCchhhHHHHHHHHHHh--hcccccCCccEEEEcCCCCHHHHHHHHHcCCccccc
Confidence 666555 49999988777753 231 12 23333333211 101122358899999997 556677778887
Q ss_pred ---cEEEEcccc-cCCCC
Q 023494 249 ---NALVAGSAV-FGAKD 262 (281)
Q Consensus 249 ---D~~VvGSaI-f~a~d 262 (281)
+.+.+|+.+ +..|.
T Consensus 194 Ga~~GV~mGTrFl~t~Es 211 (320)
T cd04743 194 GAKVGVLMGTAYLFTEEA 211 (320)
T ss_pred ccccEEEEccHHhcchhh
Confidence 899999775 44444
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.008 Score=58.59 Aligned_cols=151 Identities=18% Similarity=0.166 Sum_probs=99.7
Q ss_pred HHHcCcC-CCCCeeEEEEec-ChhhH---HHHHHHcCCCEEEEccccc--------------ccccHHHHHHHHHHc-CC
Q 023494 107 VDALRPV-TDLPLDVHLMIV-EPEQR---VPDFIKAGADIVSVHCEQS--------------STIHLHRTLNQIKDL-GA 166 (281)
Q Consensus 107 I~~ir~~-t~~~idaHLmv~-dp~~~---i~~~~~aGAd~Itvh~Ea~--------------~~~~i~~~l~~ik~~-G~ 166 (281)
++.+++. .+.++.+-+.-. +++.| .+.+.++|+|++.+-.-+. ..+.+.++++.+++. .+
T Consensus 90 ~~~~~~~~~~~p~i~si~g~~~~~~~~~~a~~~~~~g~d~ielN~scP~~~~~~~~g~~~~~~~~~~~~i~~~v~~~~~~ 169 (420)
T PRK08318 90 IRRVKRDYPDRALIASIMVECNEEEWKEIAPLVEETGADGIELNFGCPHGMSERGMGSAVGQVPELVEMYTRWVKRGSRL 169 (420)
T ss_pred HHHHHhhCCCceEEEEeccCCCHHHHHHHHHHHHhcCCCEEEEeCCCCCCccccCCcccccCCHHHHHHHHHHHHhccCC
Confidence 3344433 356777888877 77754 4455678999998753321 112456777777765 46
Q ss_pred cEEEEECCCC-CHHHHHHhhc--cCCEEEE-------Eee-----------cC-----CCCCCccchhHHHHHHHHHHHh
Q 023494 167 KAGVVLNPAT-SLSAIECVLD--VVDLVLI-------MSV-----------NP-----GFGGQSFIESQVKKISDLRRMC 220 (281)
Q Consensus 167 k~Glai~p~t-~ie~~~~~l~--~vD~Ilv-------msV-----------~p-----G~~GQ~f~~~~l~kI~~lr~l~ 220 (281)
-+.+=|.|+. .+..+...+. .+|-|.+ |.+ ++ |++|....|-.++.|+++++..
T Consensus 170 Pv~vKl~p~~~~~~~~a~~~~~~Gadgi~~~Nt~~~~~~id~~~~~~~p~~~~~~~~gg~SG~a~~p~~l~~v~~~~~~~ 249 (420)
T PRK08318 170 PVIVKLTPNITDIREPARAAKRGGADAVSLINTINSITGVDLDRMIPMPIVNGKSSHGGYCGPAVKPIALNMVAEIARDP 249 (420)
T ss_pred cEEEEcCCCcccHHHHHHHHHHCCCCEEEEecccCccccccccccCCCceecCCCCcccccchhhhHHHHHHHHHHHhcc
Confidence 6677777763 4444434332 3777663 211 11 4456667777888888887754
Q ss_pred hhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 221 LEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 221 ~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.. .+++|..-|||. .+.+.+++.+|||.+=+||+++.
T Consensus 250 ~~--~~ipIig~GGI~s~~da~e~i~aGA~~Vqi~ta~~~ 287 (420)
T PRK08318 250 ET--RGLPISGIGGIETWRDAAEFILLGAGTVQVCTAAMQ 287 (420)
T ss_pred cc--CCCCEEeecCcCCHHHHHHHHHhCCChheeeeeecc
Confidence 21 147888899998 88999999999999999999885
|
|
| >PRK07094 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.0045 Score=57.92 Aligned_cols=177 Identities=19% Similarity=0.222 Sum_probs=103.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+...+.++++.+.+.|++.+.+ ..|. .|. ...=.++++.|++.++..+.+++-..+ .+.++.+.++|++.+.+.
T Consensus 71 s~eei~~~~~~~~~~g~~~i~l--~gG~-~~~~~~~~l~~l~~~i~~~~~l~i~~~~g~~~-~e~l~~Lk~aG~~~v~~g 146 (323)
T PRK07094 71 SPEEILECAKKAYELGYRTIVL--QSGE-DPYYTDEKIADIIKEIKKELDVAITLSLGERS-YEEYKAWKEAGADRYLLR 146 (323)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--ecCC-CCCCCHHHHHHHHHHHHccCCceEEEecCCCC-HHHHHHHHHcCCCEEEec
Confidence 3445566677777889988765 4442 121 122234566666644443333332223 347788999999999998
Q ss_pred ccccc------------cccHHHHHHHHHHcCCcEEE--EEC-CCCCHHHHHHhhc-----cCCEEEEEee--cCCCC--
Q 023494 146 CEQSS------------TIHLHRTLNQIKDLGAKAGV--VLN-PATSLSAIECVLD-----VVDLVLIMSV--NPGFG-- 201 (281)
Q Consensus 146 ~Ea~~------------~~~i~~~l~~ik~~G~k~Gl--ai~-p~t~ie~~~~~l~-----~vD~IlvmsV--~pG~~-- 201 (281)
.|+.+ .++..+.++.+++.|+.++. .+. |....+.+.+.+. .+|.+.++.. .||..
T Consensus 147 lEs~~~~~~~~i~~~~s~~~~~~~i~~l~~~Gi~v~~~~iiGlpget~ed~~~~l~~l~~l~~~~v~~~~~~P~pgTpl~ 226 (323)
T PRK07094 147 HETADKELYAKLHPGMSFENRIACLKDLKELGYEVGSGFMVGLPGQTLEDLADDILFLKELDLDMIGIGPFIPHPDTPLK 226 (323)
T ss_pred cccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeecceEEEECCCCCHHHHHHHHHHHHhCCCCeeeeeccccCCCCCcc
Confidence 88631 12355677888899987653 444 4555555444332 2577666544 45532
Q ss_pred CCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEE
Q 023494 202 GQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALV 252 (281)
Q Consensus 202 GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~V 252 (281)
... -....++.+..+|-+++.. .|...+| +.++-....+.+|||.+.
T Consensus 227 ~~~~~~~~~~~~~~a~~R~~lp~~----~i~~~~~~~~~~~~~~~~~l~~Gan~~~ 278 (323)
T PRK07094 227 DEKGGSLELTLKVLALLRLLLPDA----NIPATTALGTLNPDGREKGLKAGANVVM 278 (323)
T ss_pred cCCCCCHHHHHHHHHHHHHhCcCC----CCcccCCccccCchhHHHHHHcCCceec
Confidence 111 1244466777777777642 3433444 445555678999999775
|
|
| >PRK05437 isopentenyl pyrophosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0045 Score=59.20 Aligned_cols=150 Identities=17% Similarity=0.139 Sum_probs=93.0
Q ss_pred HHHHcCcC-CCCCeeEEEEecCh-----hhHHHHHHHcCCCEEEEcccc----c---ccccHH---HHHHHHHHc-CCcE
Q 023494 106 VVDALRPV-TDLPLDVHLMIVEP-----EQRVPDFIKAGADIVSVHCEQ----S---STIHLH---RTLNQIKDL-GAKA 168 (281)
Q Consensus 106 ~I~~ir~~-t~~~idaHLmv~dp-----~~~i~~~~~aGAd~Itvh~Ea----~---~~~~i~---~~l~~ik~~-G~k~ 168 (281)
..+.+|+. ++.|+.+-|-+..+ +...+....++||.+-+|... . ...+.. +.++.+++. ++.+
T Consensus 110 ~~~~vr~~~p~~p~~aNl~~~~~~~~~~~~~~~~~~~~~adal~l~l~~~qe~~~p~g~~~f~~~le~i~~i~~~~~vPV 189 (352)
T PRK05437 110 SFSVVRKVAPDGLLFANLGAVQLYGYGVEEAQRAVEMIEADALQIHLNPLQELVQPEGDRDFRGWLDNIAEIVSALPVPV 189 (352)
T ss_pred HHHHHHHHCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCccchhhcCCCCcccHHHHHHHHHHHHHhhCCCE
Confidence 34455665 47888886666433 444444456789999999632 0 112344 677777775 7777
Q ss_pred EEEECC-CCCHHHHHHhhc-cCCEEEEEeecCCCC--------C-C--------ccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 169 GVVLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFG--------G-Q--------SFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 169 Glai~p-~t~ie~~~~~l~-~vD~IlvmsV~pG~~--------G-Q--------~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
++=... .+..+..+.+.+ .+|.|.+-+ ..|.. + + .|-..+.+-|.++++.. .+++|
T Consensus 190 ivK~~g~g~s~~~a~~l~~~Gvd~I~Vsg-~GGt~~~~ie~~R~~~~~~~~~~~~~g~pt~~~l~~i~~~~----~~ipv 264 (352)
T PRK05437 190 IVKEVGFGISKETAKRLADAGVKAIDVAG-AGGTSWAAIENYRARDDRLASYFADWGIPTAQSLLEARSLL----PDLPI 264 (352)
T ss_pred EEEeCCCCCcHHHHHHHHHcCCCEEEECC-CCCCCccchhhhhhhccccccccccccCCHHHHHHHHHHhc----CCCeE
Confidence 764432 355666666655 489998732 22211 0 0 01111334454444432 24789
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.++|||. ...+.+++.+|||.+-+|++++.+
T Consensus 265 ia~GGI~~~~dv~k~l~~GAd~v~ig~~~l~~ 296 (352)
T PRK05437 265 IASGGIRNGLDIAKALALGADAVGMAGPFLKA 296 (352)
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEhHHHHHH
Confidence 9999999 779999999999999999998754
|
|
| >PRK08508 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.026 Score=52.17 Aligned_cols=197 Identities=19% Similarity=0.231 Sum_probs=113.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeEEEEecCh---hhHHHHHHHcCCCEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEP---EQRVPDFIKAGADIV 142 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~idaHLmv~dp---~~~i~~~~~aGAd~I 142 (281)
++.++.+.++.+.+.|+..+++ +-.|...+. +.+=.++++.||+.. .++++...+. .+.++.+.++|+|.+
T Consensus 41 s~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~~---p~l~i~~s~G~~~~e~l~~Lk~aGld~~ 116 (279)
T PRK08508 41 DIEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKEV---PGLHLIACNGTASVEQLKELKKAGIFSY 116 (279)
T ss_pred CHHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHhhC---CCcEEEecCCCCCHHHHHHHHHcCCCEE
Confidence 4456666666666788988877 334432221 222345666777542 1333333222 236778899999999
Q ss_pred EEccccc--------ccccHH---HHHHHHHHcCCcE--EEEECCCCCHHHHHHhhc-----cCCEEEEEeecC--CCC-
Q 023494 143 SVHCEQS--------STIHLH---RTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-----VVDLVLIMSVNP--GFG- 201 (281)
Q Consensus 143 tvh~Ea~--------~~~~i~---~~l~~ik~~G~k~--Glai~p~t~ie~~~~~l~-----~vD~IlvmsV~p--G~~- 201 (281)
..-.|.. +..++. ++++.+++.|+++ |+.+..+...+...+.+. .+|.|-+.-.+| |..
T Consensus 117 ~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGEt~ed~~~~l~~lr~L~~~svpl~~~~p~~~t~~ 196 (279)
T PRK08508 117 NHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGESWEDRISFLKSLASLSPHSTPINFFIPNPALPL 196 (279)
T ss_pred cccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCCCHHHHHHHHHHHHcCCCCEEeeCCcCCCCCCCC
Confidence 9765542 112233 4777789999877 455555555544444332 256554433333 332
Q ss_pred -CCccch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEcccccCC-CCHHHHHHHHHH
Q 023494 202 -GQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKT 272 (281)
Q Consensus 202 -GQ~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l~~ 272 (281)
..+..+ +.+.-+.-.|-+++ +..|-+.||-. .+.-..+..+|||.+++|-+++.. .++++-.+-+++
T Consensus 197 ~~~~~~~~~~lr~iAv~Rl~lp----~~~i~~~~gr~~~~~~~~~~~~~~g~n~~~~g~~lt~~g~~~~~d~~~~~~ 269 (279)
T PRK08508 197 KAPTLSADEALEIVRLAKEALP----NARLMVAGGREVVFGERQYEIFEAGANAIVIGDYLTTKGEAPKKDIEKLKS 269 (279)
T ss_pred CCCCCCHHHHHHHHHHHHHHCC----CceeeecCChhhhchhhHHHHHhcCCcceeecCcccCCCCChHHHHHHHHH
Confidence 122222 33444555555554 35688899873 234557889999999999999865 455555555544
|
|
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0051 Score=58.84 Aligned_cols=181 Identities=19% Similarity=0.264 Sum_probs=102.6
Q ss_pred Cc-cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-------C--CCCeeEEEEecC-hhhHHHHHHH
Q 023494 68 NF-AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-------T--DLPLDVHLMIVE-PEQRVPDFIK 136 (281)
Q Consensus 68 D~-~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-------t--~~~idaHLmv~d-p~~~i~~~~~ 136 (281)
|. .+.+=++...+..|+-.||- +.. +..-.+.++.+|+. . ...+-+-+-+.+ -.+.++.+.+
T Consensus 46 DtVte~~mAiama~~Gglgvih~-----~~~--~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~~~L~~ 118 (352)
T PF00478_consen 46 DTVTESEMAIAMARLGGLGVIHR-----NMS--IEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERAEALVE 118 (352)
T ss_dssp TTTSSHHHHHHHHHTTSEEEEES-----SSC--HHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHHHHHHH
T ss_pred cccchHHHHHHHHHhcCCceecC-----CCC--HHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHHHHHHH
Confidence 53 35555555566667766764 211 12223445555432 1 233444444433 2345778899
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE-ECCCCCHHHHHHhhc-cCCEEEEEeecCCCCC--Cc----cchh
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLD-VVDLVLIMSVNPGFGG--QS----FIES 208 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla-i~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~G--Q~----f~~~ 208 (281)
+|+|.+.+.......++..+.++.+|+.--++-|. =|-.| .+-.+.+++ .+|.|-+ .+=||--= +. -.|
T Consensus 119 agvD~ivID~a~g~s~~~~~~ik~ik~~~~~~~viaGNV~T-~e~a~~L~~aGad~vkV-GiGpGsiCtTr~v~GvG~P- 195 (352)
T PF00478_consen 119 AGVDVIVIDSAHGHSEHVIDMIKKIKKKFPDVPVIAGNVVT-YEGAKDLIDAGADAVKV-GIGPGSICTTREVTGVGVP- 195 (352)
T ss_dssp TT-SEEEEE-SSTTSHHHHHHHHHHHHHSTTSEEEEEEE-S-HHHHHHHHHTT-SEEEE-SSSSSTTBHHHHHHSBSCT-
T ss_pred cCCCEEEccccCccHHHHHHHHHHHHHhCCCceEEecccCC-HHHHHHHHHcCCCEEEE-eccCCcccccccccccCCc-
Confidence 99999999654433456777888888764444443 34333 445556655 4899876 33333200 00 122
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+.-|.+..+...+ ++.+|..||||+ ..++-+.+.+|||.+-+||.+-+.
T Consensus 196 Q~tAv~~~a~~a~~--~~v~iIADGGi~~sGDi~KAla~GAd~VMlG~llAgt 246 (352)
T PF00478_consen 196 QLTAVYECAEAARD--YGVPIIADGGIRTSGDIVKALAAGADAVMLGSLLAGT 246 (352)
T ss_dssp HHHHHHHHHHHHHC--TTSEEEEESS-SSHHHHHHHHHTT-SEEEESTTTTTB
T ss_pred HHHHHHHHHHHhhh--ccCceeecCCcCcccceeeeeeecccceeechhhccC
Confidence 23334444554433 468999999999 779999999999999999988764
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PF01180 DHO_dh: Dihydroorotate dehydrogenase; InterPro: IPR012135 Dihydroorotate dehydrogenase (DHOD), also known as dihydroorotate oxidase, catalyses the fourth step in de novo pyrimidine biosynthesis, the stereospecific oxidation of (S)-dihydroorotate to orotate, which is the only redox reaction in this pathway | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00086 Score=62.21 Aligned_cols=167 Identities=26% Similarity=0.307 Sum_probs=100.6
Q ss_pred CceEeEEEeccC---ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC------CHH----HHHHcCcCCCCCeeEEEE
Q 023494 57 DIIVSPSILSAN---FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI------GPL----VVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 57 ~~~i~pSila~D---~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~------G~~----~I~~ir~~t~~~idaHLm 123 (281)
.+-+..|+.+.. ..++.+.++.++ .|+|.+++.+ ..||... .++ +++.+|+.+++|+.+-|-
T Consensus 96 ~~pvi~Si~~~~~~~~~d~~~~a~~~~-~~ad~lElN~----ScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~Pv~vKL~ 170 (295)
T PF01180_consen 96 DIPVIASINGDSEEEIEDWAELAKRLE-AGADALELNL----SCPNVPGGRPFGQDPELVAEIVRAVREAVDIPVFVKLS 170 (295)
T ss_dssp CEEEEEEE-TSSSGHHHHHHHHHHHHH-HHCSEEEEES----TSTTSTTSGGGGGHHHHHHHHHHHHHHHHSSEEEEEE-
T ss_pred ceeEEEEeecCCchhHHHHHHHHHHhc-CcCCceEEEe----eccCCCCccccccCHHHHHHHHHHHHhccCCCEEEEec
Confidence 467888998887 555555556666 6799999963 2344421 223 333445556788888554
Q ss_pred ec--Chhh--HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC
Q 023494 124 IV--EPEQ--RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199 (281)
Q Consensus 124 v~--dp~~--~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG 199 (281)
-+ +... ....+.+.|++.|+.--- ...+..+++++.- ++... ..-|
T Consensus 171 p~~~~~~~~~~~~~~~~~g~~gi~~~Nt------------------~~~~~~id~~~~~----~~~~~--------~~gG 220 (295)
T PF01180_consen 171 PNFTDIEPFAIAAELAADGADGIVAINT------------------FGQGDAIDLETRR----PVLGN--------GFGG 220 (295)
T ss_dssp STSSCHHHHHHHHHHHTHTECEEEE---------------------EEEEE-EETTTTE----ESSSG--------GEEE
T ss_pred CCCCchHHHHHHHHhhccceeEEEEecC------------------ccCcccccchhcc----eeecc--------ccCC
Confidence 42 3221 233344667777663210 0111223332211 11110 1113
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccc-cCCC
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV-FGAK 261 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaI-f~a~ 261 (281)
.+|....|..+..++++++..++ +++|..-|||. .+.+.+++.+|||.+=++|++ ++..
T Consensus 221 lSG~~i~p~aL~~V~~~~~~~~~---~i~Iig~GGI~s~~da~e~l~aGA~~Vqv~Sal~~~Gp 281 (295)
T PF01180_consen 221 LSGPAIRPIALRWVRELRKALGQ---DIPIIGVGGIHSGEDAIEFLMAGASAVQVCSALIYRGP 281 (295)
T ss_dssp EEEGGGHHHHHHHHHHHHHHTTT---SSEEEEESS--SHHHHHHHHHHTESEEEESHHHHHHGT
T ss_pred cCchhhhhHHHHHHHHHHhcccc---ceEEEEeCCcCCHHHHHHHHHhCCCHheechhhhhcCc
Confidence 56778889999999999988753 48999999998 889999999999999999998 5433
|
DHODs can be divided into two mains classes: class 1 cytosolic enzymes found primarily in Gram-positive bacteria, and class 2 membrane-associated enzymes found primarily in eukaryotic mitochondria and Gram-negative bacteria []. The class 1 DHODs can be further divided into subclasses 1A and 1B, which differ in their structural organisation and use of electron acceptors. The 1A enzyme is a homodimer of two PyrD subunits where each subunit forms a TIM barrel fold with a bound FMN cofactor located near the top of the barrel []. Fumarate is the natural electron acceptor for this enzyme. The 1B enzyme, in contrast is a heterotetramer composed of a central, FMN-containing, PyrD homodimer resembling the 1A homodimer, and two additional PyrK subunits which contain FAD and a 2Fe-2S cluster []. These additional groups allow the enzyme to use NAD(+) as its natural electron acceptor. The class 2 membrane-associated enzymes are monomers which have the FMN-containing TIM barrel domain found in the class 1 PyrD subunit, and an additional N-terminal alpha helical domain [, ]. These enzymes use respiratory quinones as the physiological electron acceptor. This entry represents the FMN-binding subunit common to all classes of dihydroorotate dehydrogenase.; GO: 0004152 dihydroorotate dehydrogenase activity, 0006222 UMP biosynthetic process, 0055114 oxidation-reduction process; PDB: 3GYE_A 3GZ3_A 3MHU_B 3MJY_A 3TQ0_A 2B4G_C 1EP3_A 1EP2_A 1EP1_A 3I6R_A .... |
| >PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0014 Score=61.18 Aligned_cols=93 Identities=20% Similarity=0.288 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
.+.+.++.+|+..-..-+.+... .++.+++.++ .+|.|++ + .|.|+.+.+ +.++++. ++.+++
T Consensus 191 ~i~~av~~~r~~~~~~kIeVEve-tleea~eA~~aGaDiImL-------D--nmspe~l~~---av~~~~~---~~~lEa 254 (294)
T PRK06978 191 GVGAALDAAFALNAGVPVQIEVE-TLAQLETALAHGAQSVLL-------D--NFTLDMMRE---AVRVTAG---RAVLEV 254 (294)
T ss_pred CHHHHHHHHHHhCCCCcEEEEcC-CHHHHHHHHHcCCCEEEE-------C--CCCHHHHHH---HHHhhcC---CeEEEE
Confidence 36678888887642112444434 3666666666 4999986 2 355655544 4444432 478999
Q ss_pred ecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 232 DGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.||||++|+.++.+.|+|++++|+-..++.
T Consensus 255 SGGIt~~ni~~yA~tGVD~IS~galthsa~ 284 (294)
T PRK06978 255 SGGVNFDTVRAFAETGVDRISIGALTKDVR 284 (294)
T ss_pred ECCCCHHHHHHHHhcCCCEEEeCccccCCc
Confidence 999999999999999999999998766653
|
|
| >COG0167 PyrD Dihydroorotate dehydrogenase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0054 Score=57.71 Aligned_cols=186 Identities=19% Similarity=0.271 Sum_probs=111.6
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcC-CCeEEEEeeeCcccccc-cCC--HH----HHHHcCcCCCCCeeEEEEecChhh
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAG-CDWIHVDVMDGRFVPNI-TIG--PL----VVDALRPVTDLPLDVHLMIVEPEQ 129 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G-~d~iHiDImDG~fvpn~-~~G--~~----~I~~ir~~t~~~idaHLmv~dp~~ 129 (281)
+.|..|..........+.+..+++.+ +|++++-|-=-| +|.. .++ ++ +++++|+.+++|+-+-|== |
T Consensus 97 ~~i~~~~~~~~~~~~~d~~~~~~~~~~ad~ielNiScPn-t~g~~~l~~~~e~l~~l~~~vk~~~~~Pv~vKl~P-~--- 171 (310)
T COG0167 97 VNIGKNKGGPSEEAWADYARLLEEAGDADAIELNISCPN-TPGGRALGQDPELLEKLLEAVKAATKVPVFVKLAP-N--- 171 (310)
T ss_pred cceEEecCCCcHHHHHHHHHHHHhcCCCCEEEEEccCCC-CCChhhhccCHHHHHHHHHHHHhcccCceEEEeCC-C---
Confidence 34777777766677888888888888 899999643322 2221 233 22 3344455566777663321 1
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhH
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
..++.+..+.+.++|...-+++|...+-..+.. ... ....-.-+-|.+|....|..
T Consensus 172 ---------------------~~di~~iA~~~~~~g~Dgl~~~NT~~~~~~id~--~~~-~~~~~~~~GGLSG~~ikp~a 227 (310)
T COG0167 172 ---------------------ITDIDEIAKAAEEAGADGLIAINTTKSGMKIDL--ETK-KPVLANETGGLSGPPLKPIA 227 (310)
T ss_pred ---------------------HHHHHHHHHHHHHcCCcEEEEEeeccccccccc--ccc-ccccCcCCCCcCcccchHHH
Confidence 123444445555555555555543221110000 000 00000112366888888999
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CC-HHHHHHHHHHhcC
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD-YAEAIKGIKTSKR 275 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~d-p~~~~~~l~~~~~ 275 (281)
++-|+++++.... +++|.--|||. .+++-+.+.+||+.+=+||+++.. .. ..+..+.|.+.++
T Consensus 228 l~~v~~l~~~~~~---~ipIIGvGGI~s~~DA~E~i~aGA~~vQv~Tal~~~Gp~i~~~I~~~l~~~l~ 293 (310)
T COG0167 228 LRVVAELYKRLGG---DIPIIGVGGIETGEDALEFILAGASAVQVGTALIYKGPGIVKEIIKGLARWLE 293 (310)
T ss_pred HHHHHHHHHhcCC---CCcEEEecCcCcHHHHHHHHHcCCchheeeeeeeeeCchHHHHHHHHHHHHHH
Confidence 9888888877643 58888899998 788999999999999999998854 33 3444455555444
|
|
| >PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00093 Score=61.96 Aligned_cols=155 Identities=15% Similarity=0.090 Sum_probs=94.5
Q ss_pred cCCHH-------HHHHcCcCCCCCeeEEEEecChh----hHHHHHH--HcCCCEEEEcccccccccHHHHHHHHHHcCCc
Q 023494 101 TIGPL-------VVDALRPVTDLPLDVHLMIVEPE----QRVPDFI--KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167 (281)
Q Consensus 101 ~~G~~-------~I~~ir~~t~~~idaHLmv~dp~----~~i~~~~--~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k 167 (281)
.+|++ +++++|+. ++++.+|+|..|.. .|.+.++ +.|+|.+|+|.-.. .+.+..+++..++.|..
T Consensus 66 ~~G~~G~~~l~~~i~~l~~~-g~~VilD~K~~DI~nTv~~ya~a~~~~~~g~DavTVhp~~G-~d~l~~~~~~~~~~~k~ 143 (278)
T PRK00125 66 AHGAEGLAQLERTIAYLREA-GVLVIADAKRGDIGSTAEAYAKAAFESPLEADAVTVSPYMG-FDSLEPYLEYAEEHGKG 143 (278)
T ss_pred hcCchhhhHHHHHHHHHHHC-CCcEEEEeecCChHHHHHHHHHHHhcCccCCcEEEECCcCC-HHHHHHHHHHHHhcCCE
Confidence 67887 78888875 68999999999985 4777777 68999999998643 56678888888888887
Q ss_pred EEEEECCCCCH-HHHHHhhc--c---CCEEE----EEee----cCCCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEe
Q 023494 168 AGVVLNPATSL-SAIECVLD--V---VDLVL----IMSV----NPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 168 ~Glai~p~t~i-e~~~~~l~--~---vD~Il----vmsV----~pG~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+++....+.|- ..++.+.. . .+.|. ...- .+|..|- -...+ .+.++++|+.++ +++ -+-
T Consensus 144 vfVlvlTSnp~s~~lq~~~~~~~~~l~~~V~~~a~~~~~~~~~~~g~~G~-VVgaT~p~e~~~iR~~~~----~~~-iL~ 217 (278)
T PRK00125 144 VFVLCRTSNPGGSDLQFLRTADGRPLYQHVADLAAALNNLGNCGYGSIGL-VVGATFPPELAAVRKILG----GMP-LLI 217 (278)
T ss_pred EEEEEeCCCCCHHHHHhhhccCCCcHHHHHHHHHHHHhccccCCCCCCEE-EECCCCHHHHHHHHHhCC----CCe-EEe
Confidence 77766444444 33332210 0 11111 0000 1343330 11222 344666666653 234 478
Q ss_pred cCCChh--cHHHHHHcCCc----EE-EEcccccCCCCH
Q 023494 233 GGVGPK--NAYKVIEAGAN----AL-VAGSAVFGAKDY 263 (281)
Q Consensus 233 GGI~~e--~i~~~~~aGAD----~~-VvGSaIf~a~dp 263 (281)
.||.++ ++..++++|++ ++ -+.++|..+.+.
T Consensus 218 PGigaQGg~~~~~~~~~~~~~~~~l~~~SR~il~a~~~ 255 (278)
T PRK00125 218 PGIGAQGGDAEATVRAGGAAGNGGIPNSSRAILYAGPG 255 (278)
T ss_pred CCcCCCCcCHHHHHHHhhhcCCCEEeecCHHHHcCCCc
Confidence 999855 46777777665 33 334667665444
|
|
| >PRK14565 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.0047 Score=56.03 Aligned_cols=135 Identities=13% Similarity=0.159 Sum_probs=83.2
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCH-----------HHHHHhhccCCEEEE
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-----------SAIECVLDVVDLVLI 193 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-----------e~~~~~l~~vD~Ilv 193 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+++.+-+.-.... ..+...++..+- ++
T Consensus 78 ~~mLkd~G~~~viiGHSERR~~f~Etd~~V~~Kv~~al~~gl~pIvCiGE~~e~r~~~~~~~~~~~Ql~~~l~~~~~-iv 156 (237)
T PRK14565 78 AKMLKECGCSYVILGHSERRSTFHETDSDIRLKAESAIESGLIPIICVGETLEDRENGMTKDVLLEQCSNCLPKHGE-FI 156 (237)
T ss_pred HHHHHHcCCCEEEECcccccCcCCcCHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHccChHHHHHHHHHHHhcCCCC-EE
Confidence 578899999998875 221 023344444578889999988877532111 011122222211 22
Q ss_pred EeecCCC---CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCCCCHHHHHHH
Q 023494 194 MSVNPGF---GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 194 msV~pG~---~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
..-+|-+ +|+.-.|+- +++..+.+++...+.+|.-.|+|+++|+.++.+. ++|++-+|++..+.+++.+.++.
T Consensus 157 IAYEPvWAIGtG~~a~~e~---i~~~~~~Ir~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~asl~~~~f~~ii~~ 233 (237)
T PRK14565 157 IAYEPVWAIGGSTIPSNDA---IAEAFEIIRSYDSKSHIIYGGSVNQENIRDLKSINQLSGVLVGSASLDVDSFCKIIQQ 233 (237)
T ss_pred EEECCHHHhCCCCCCCHHH---HHHHHHHHHHhCCCceEEEcCccCHhhHHHHhcCCCCCEEEEechhhcHHHHHHHHHH
Confidence 3346632 355444443 3444444433233578889999999999998765 89999999999987777666554
|
|
| >PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.019 Score=54.72 Aligned_cols=172 Identities=18% Similarity=0.245 Sum_probs=108.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC----cccccc-cC-CHHHHHHcCcC-CCCCeeEEEEe--cChhhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG----RFVPNI-TI-GPLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG----~fvpn~-~~-G~~~I~~ir~~-t~~~idaHLmv--~dp~~~i~~~~~aGAd 140 (281)
....+.++.|.++|++.|++---|| .|...+ .+ ..+.++.+++. ++..+-+.+.- .+. +.++.+.++|+|
T Consensus 25 ~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~~-~dl~~a~~~gvd 103 (337)
T PRK08195 25 EQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAHTDEEYIEAAAEVVKQAKIAALLLPGIGTV-DDLKMAYDAGVR 103 (337)
T ss_pred HHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCCCHHHHHHHHHHhCCCCEEEEEeccCcccH-HHHHHHHHcCCC
Confidence 3455667888899999998843332 221111 11 24667777543 44455543321 122 457888999999
Q ss_pred EEE--EcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHH
Q 023494 141 IVS--VHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 141 ~It--vh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
.|- +|... .+...+.++.+|+.|+++.+.+ .+.++.+.+.++++. +|.|.+. -..|.....++.+
T Consensus 104 ~iri~~~~~e--~~~~~~~i~~ak~~G~~v~~~l~~a~~~~~e~l~~~a~~~~~~Ga~~i~i~----DT~G~~~P~~v~~ 177 (337)
T PRK08195 104 VVRVATHCTE--ADVSEQHIGLARELGMDTVGFLMMSHMAPPEKLAEQAKLMESYGAQCVYVV----DSAGALLPEDVRD 177 (337)
T ss_pred EEEEEEecch--HHHHHHHHHHHHHCCCeEEEEEEeccCCCHHHHHHHHHHHHhCCCCEEEeC----CCCCCCCHHHHHH
Confidence 855 55542 3557889999999999887644 444566665555442 6777552 2345545555667
Q ss_pred HHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 212 KISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.++.+++.++ .+++|.+ +-|....|.-..+++||+.+
T Consensus 178 ~v~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 218 (337)
T PRK08195 178 RVRALRAALK---PDTQVGFHGHNNLGLGVANSLAAVEAGATRI 218 (337)
T ss_pred HHHHHHHhcC---CCCeEEEEeCCCcchHHHHHHHHHHhCCCEE
Confidence 7777776652 2356665 66777778889999999954
|
|
| >PRK14114 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=60.36 Aligned_cols=79 Identities=14% Similarity=0.217 Sum_probs=57.9
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|++..+.|.+ .+|.+.+.-.+....|..-+...+ +++.+.. .+++|+|||+ .+.++.+.++|||-+|
T Consensus 30 ~dP~~~A~~~~~~ga~~lhivDLd~a~~g~~~n~~~i---~~i~~~~------~~v~vGGGIrs~e~~~~~l~~Ga~rvv 100 (241)
T PRK14114 30 KDPAELVEKLIEEGFTLIHVVDLSKAIENSVENLPVL---EKLSEFA------EHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcccCCcchHHHH---HHHHhhc------CcEEEecCCCCHHHHHHHHHCCCCEEE
Confidence 467777777765 378888877776555655444444 4443332 3799999999 7999999999999999
Q ss_pred EcccccCCCC
Q 023494 253 AGSAVFGAKD 262 (281)
Q Consensus 253 vGSaIf~a~d 262 (281)
+||..++.++
T Consensus 101 igT~a~~~p~ 110 (241)
T PRK14114 101 VSSKVLEDPS 110 (241)
T ss_pred ECchhhCCHH
Confidence 9999987543
|
|
| >COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0025 Score=58.82 Aligned_cols=94 Identities=14% Similarity=0.272 Sum_probs=63.3
Q ss_pred cHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 153 HLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 153 ~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
.+.+.++.+|+. +-..-+.+..++ ++.+++.++ .+|.|++ +. |.|+.++ ++.+++. .+.+..++
T Consensus 173 ~i~~Av~~aR~~~~~~~kIEVEves-le~~~eAl~agaDiImL-------DN--m~~e~~~---~av~~l~-~~~~~~lE 238 (280)
T COG0157 173 SITEAVRRARAAAPFTKKIEVEVES-LEEAEEALEAGADIIML-------DN--MSPEELK---EAVKLLG-LAGRALLE 238 (280)
T ss_pred cHHHHHHHHHHhCCCCceEEEEcCC-HHHHHHHHHcCCCEEEe-------cC--CCHHHHH---HHHHHhc-cCCceEEE
Confidence 477888888876 322334444444 444555554 5999986 23 6565544 4444432 22357899
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+-||||++|++.+.+.|+|.+.+|.-..++
T Consensus 239 aSGgIt~~ni~~yA~tGVD~IS~galths~ 268 (280)
T COG0157 239 ASGGITLENIREYAETGVDVISVGALTHSA 268 (280)
T ss_pred EeCCCCHHHHHHHhhcCCCEEEeCccccCC
Confidence 999999999999999999999998654443
|
|
| >TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.024 Score=53.93 Aligned_cols=174 Identities=19% Similarity=0.198 Sum_probs=107.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC----cccccc-cC-CHHHHHHcCcC-CCCCeeEEEEe--cChhhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG----RFVPNI-TI-GPLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG----~fvpn~-~~-G~~~I~~ir~~-t~~~idaHLmv--~dp~~~i~~~~~aGAd 140 (281)
.+..+.++.|.++|+++|++---|| .|...+ .+ ..+.++++++. .+..+-+.+.- .+ .+.++.+.++|+|
T Consensus 24 ~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~~ll~pg~~~-~~dl~~a~~~gvd 102 (333)
T TIGR03217 24 EQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVAVLLLPGIGT-VHDLKAAYDAGAR 102 (333)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEEEEeccCccC-HHHHHHHHHCCCC
Confidence 3556677888999999998843333 222111 11 23556666543 33334332211 12 2457888999999
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
.|.+-......+...+.++.+|+.|.++...+ .+.++.+.+.++.+. +|.|.+. -..|.....++.+.+
T Consensus 103 ~iri~~~~~e~d~~~~~i~~ak~~G~~v~~~l~~s~~~~~e~l~~~a~~~~~~Ga~~i~i~----DT~G~~~P~~v~~~v 178 (333)
T TIGR03217 103 TVRVATHCTEADVSEQHIGMARELGMDTVGFLMMSHMTPPEKLAEQAKLMESYGADCVYIV----DSAGAMLPDDVRDRV 178 (333)
T ss_pred EEEEEeccchHHHHHHHHHHHHHcCCeEEEEEEcccCCCHHHHHHHHHHHHhcCCCEEEEc----cCCCCCCHHHHHHHH
Confidence 88754332123457889999999999987654 444566666555442 6767553 234554555566777
Q ss_pred HHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 214 SDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
+.+++.++ .+++|.+ +=|....|.-..+++||+.+
T Consensus 179 ~~l~~~l~---~~i~ig~H~HnnlGla~ANslaAi~aGa~~i 217 (333)
T TIGR03217 179 RALKAVLK---PETQVGFHAHHNLSLAVANSIAAIEAGATRI 217 (333)
T ss_pred HHHHHhCC---CCceEEEEeCCCCchHHHHHHHHHHhCCCEE
Confidence 77776653 1356766 55666668888999999974
|
Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated. |
| >PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0022 Score=59.79 Aligned_cols=90 Identities=16% Similarity=0.244 Sum_probs=64.6
Q ss_pred cHHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 153 HLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 153 ~i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.+.+.++.+|+.. .|+-+-. . .++++.+.++. +|.|++ .+|.|+.+.+ +.+++++ +..
T Consensus 182 ~i~~av~~~r~~~~~~~kIeVEv--~-tleea~~a~~agaDiImL---------Dnmspe~l~~---av~~~~~---~~~ 243 (290)
T PRK06559 182 SVQKAIAQARAYAPFVKMVEVEV--E-SLAAAEEAAAAGADIIML---------DNMSLEQIEQ---AITLIAG---RSR 243 (290)
T ss_pred cHHHHHHHHHHhCCCCCeEEEEC--C-CHHHHHHHHHcCCCEEEE---------CCCCHHHHHH---HHHHhcC---ceE
Confidence 4667888888763 4555544 3 55667776664 999986 2366665544 4444433 478
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++.||||++|++++.+.|+|++++|+-..++
T Consensus 244 leaSGGI~~~ni~~yA~tGVD~Is~galthsa 275 (290)
T PRK06559 244 IECSGNIDMTTISRFRGLAIDYVSSGSLTHSA 275 (290)
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEeCccccCC
Confidence 99999999999999999999999999865544
|
|
| >PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.001 Score=60.06 Aligned_cols=79 Identities=20% Similarity=0.239 Sum_probs=57.3
Q ss_pred CCCHHHHHHhhc-c-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 175 ATSLSAIECVLD-V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 175 ~t~ie~~~~~l~-~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
.+|++..+.|.+ . +|.+.+.-.+.-..|+.-+ ++-|+++.+.. +.+|+++|||+ .|.++.+.++||+-+
T Consensus 31 ~dp~~~a~~~~~~~Ga~~l~ivDLd~a~~~~~~n---~~~I~~i~~~~-----~~pi~vGGGIrs~e~v~~~l~~Ga~kv 102 (234)
T PRK13587 31 RSAEESIAYYSQFECVNRIHIVDLIGAKAQHARE---FDYIKSLRRLT-----TKDIEVGGGIRTKSQIMDYFAAGINYC 102 (234)
T ss_pred CCHHHHHHHHHhccCCCEEEEEECcccccCCcch---HHHHHHHHhhc-----CCeEEEcCCcCCHHHHHHHHHCCCCEE
Confidence 467777777766 3 7988887665433454433 33444444432 36899999999 899999999999999
Q ss_pred EEcccccCCC
Q 023494 252 VAGSAVFGAK 261 (281)
Q Consensus 252 VvGSaIf~a~ 261 (281)
|+||+-++..
T Consensus 103 vigt~a~~~~ 112 (234)
T PRK13587 103 IVGTKGIQDT 112 (234)
T ss_pred EECchHhcCH
Confidence 9999988643
|
|
| >PRK13803 bifunctional phosphoribosylanthranilate isomerase/tryptophan synthase subunit beta; Provisional | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.037 Score=56.73 Aligned_cols=175 Identities=15% Similarity=0.096 Sum_probs=104.5
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHH-HHHcCcC-CC-CCeeEEEEec-ChhhHHHHHHHcCCCEEEEcc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLV-VDALRPV-TD-LPLDVHLMIV-EPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~-I~~ir~~-t~-~~idaHLmv~-dp~~~i~~~~~aGAd~Itvh~ 146 (281)
.+.++.+.+.|+|++=+ .|.|+- ...++. .++|.+. +. ..--|=+.++ ++....+.+.+.+.|.|-+|.
T Consensus 13 ~eda~~a~~~gaD~iGf-----If~~~SpR~V~~~~~a~~i~~~l~~~~v~~VgVfv~~~~~~i~~~~~~~~ld~vQLHG 87 (610)
T PRK13803 13 SALISKAVDMLPDFIGF-----IFYEKSPRFVGNKFLAPNLEKAIRKAGGRPVGVFVNESAKAMLKFSKKNGIDFVQLHG 87 (610)
T ss_pred HHHHHHHHHcCCCEEEE-----EecCCCCCCCCHHHHHHHHHHhCCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECC
Confidence 34566777899998744 233432 245666 5555432 21 1112334555 444455666789999999998
Q ss_pred cccccccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhccCCEEEEEeecCCC--CCCccchhHHHHHHHHHHHhhh
Q 023494 147 EQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPGF--GGQSFIESQVKKISDLRRMCLE 222 (281)
Q Consensus 147 Ea~~~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~vD~IlvmsV~pG~--~GQ~f~~~~l~kI~~lr~l~~~ 222 (281)
.. .....+.++.+++.++++.-++... ..++.+.++.+.+|++++=+-.|++ +|+.|.-..+. .+.
T Consensus 88 ~e--~~~~~~~~~~l~~~~~~iika~~v~~~~~~~~~~~~~~~~d~~LlDs~~~~~GGtG~~fdw~~~~------~~~-- 157 (610)
T PRK13803 88 AE--SKAEPAYCQRIYKKSIKKIGSFLIDDAFGFEVLDEYRDHVKYFLFDNKTKIYGGSGKSFDWEKFY------NYN-- 157 (610)
T ss_pred CC--CcccHHHHHHhhhcCCcEEEEEEeCChhhHHHHHhhhccCCEEEEcCCCCCCCCCCCccChHHhh------hcc--
Confidence 64 1112456777777777776555443 3355566666668999886544443 46777654432 111
Q ss_pred cCCCCeEEEecCCChhcHHHHHHc-CCc--EEEEcccccCC---CCHH
Q 023494 223 KGVNPWIEVDGGVGPKNAYKVIEA-GAN--ALVAGSAVFGA---KDYA 264 (281)
Q Consensus 223 ~~~~~~I~VDGGI~~e~i~~~~~a-GAD--~~VvGSaIf~a---~dp~ 264 (281)
...++.+.|||+++|+.++++. .+. .+=+-|.+=.. .|++
T Consensus 158 --~~~p~iLAGGL~peNV~~ai~~~~p~~~gVDvsSGvE~~pG~KD~~ 203 (610)
T PRK13803 158 --FKFPFFLSGGLSPTNFDRIINLTHPQILGIDVSSGFEDSPGNKKLT 203 (610)
T ss_pred --cCCcEEEEeCCCHHHHHHHHhhhCCCceEEEccCcccCCCCCcCHH
Confidence 1235778999999999998873 344 45455666532 5664
|
|
| >PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0021 Score=57.94 Aligned_cols=188 Identities=16% Similarity=0.163 Sum_probs=105.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA- 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a- 137 (281)
-+.+.+...+.++..|++.+-+=+---. +.- .-+..+.+.|+. ..+|++-+..+ +..++..++
T Consensus 17 ky~s~~~m~~ai~aSg~evvTvalRR~~--~~~~~~~~~~~~~i~~-----~~~~lLPNTaGc~tA~EAv~~A~laRe~~ 89 (247)
T PF05690_consen 17 KYPSPEVMREAIEASGAEVVTVALRRVN--LGSKPGGDNILDYIDR-----SGYTLLPNTAGCRTAEEAVRTARLAREAF 89 (247)
T ss_dssp TSSSHHHHHHHHHHTT-SEEEEECCGST--TTS-TTCHHCCCCTTC-----CTSEEEEE-TT-SSHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCcEEEEEEeccc--CCCCCCCccHHHHhcc-----cCCEECCcCCCCCCHHHHHHHHHHHHHHc
Confidence 3445666666777889998766433211 101 113333333332 35777877654 223445565
Q ss_pred CCCEEEEcccccc---cccHHHHHHHHH---HcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhH
Q 023494 138 GADIVSVHCEQSS---TIHLHRTLNQIK---DLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQ 209 (281)
Q Consensus 138 GAd~Itvh~Ea~~---~~~i~~~l~~ik---~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~ 209 (281)
|-|||-+-.-..+ .+++.+++++.+ +.|..+---++++ .-..+.+.+ .+..|+-+....|. ||-. .+..
T Consensus 90 ~t~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D--~v~akrL~d~GcaavMPlgsPIGS-g~Gi~n~~~ 166 (247)
T PF05690_consen 90 GTNWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDD--PVLAKRLEDAGCAAVMPLGSPIGS-GRGIQNPYN 166 (247)
T ss_dssp S-SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEBEEBSSSTTT----SSTHHH
T ss_pred CCCeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCC--HHHHHHHHHCCCCEEEeccccccc-CcCCCCHHH
Confidence 6789876644211 245667776665 5577777667643 222333333 25556555555564 4433 3443
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
|+.+++.. ++++.||+||. +.++.+..+.|+|.+-+-|+|..+.||...++.|+..
T Consensus 167 ---l~~i~~~~-----~vPvIvDAGiG~pSdaa~AMElG~daVLvNTAiA~A~dPv~MA~Af~~A 223 (247)
T PF05690_consen 167 ---LRIIIERA-----DVPVIVDAGIGTPSDAAQAMELGADAVLVNTAIAKAKDPVAMARAFKLA 223 (247)
T ss_dssp ---HHHHHHHG-----SSSBEEES---SHHHHHHHHHTT-SEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred ---HHHHHHhc-----CCcEEEeCCCCCHHHHHHHHHcCCceeehhhHHhccCCHHHHHHHHHHH
Confidence 44445443 47899999999 8899999999999999999999999999999988864
|
ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C. |
| >cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.022 Score=51.90 Aligned_cols=169 Identities=20% Similarity=0.174 Sum_probs=105.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
...+.++.|.++|++.|++ | .|...-.. +.++.+++. ++..+.++.. .++ +.++.+.++|++.|.+..-.
T Consensus 21 ~k~~i~~~L~~~Gv~~iE~----g--~p~~~~~~~e~~~~l~~~~~~~~~~~~~r-~~~-~~v~~a~~~g~~~i~i~~~~ 92 (259)
T cd07939 21 EKLAIARALDEAGVDEIEV----G--IPAMGEEEREAIRAIVALGLPARLIVWCR-AVK-EDIEAALRCGVTAVHISIPV 92 (259)
T ss_pred HHHHHHHHHHHcCCCEEEE----e--cCCCCHHHHHHHHHHHhcCCCCEEEEecc-CCH-HHHHHHHhCCcCEEEEEEec
Confidence 4446677888999999888 3 35543333 567777653 3334443311 232 35788899999998887532
Q ss_pred cc--------------cccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 SS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~~--------------~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
.. .+.+.+.++.+|+.|..+.+.+. ..++.+.+.++... +|.|.+ +-..|.....
T Consensus 93 s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~~~P~ 168 (259)
T cd07939 93 SDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVSVGAEDASRADPDFLIEFAEVAQEAGADRLRF----ADTVGILDPF 168 (259)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEeeccCCCCCHHHHHHHHHHHHHCCCCEEEe----CCCCCCCCHH
Confidence 10 12345788899999998765442 33556666665543 666654 2334544445
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
++.+.++.+++..+ .+|++ |=|....|.-..+++|++.+ =+++.
T Consensus 169 ~v~~lv~~l~~~~~-----~~l~~H~Hn~~Gla~An~laAi~aG~~~v--d~s~~ 216 (259)
T cd07939 169 TTYELIRRLRAATD-----LPLEFHAHNDLGLATANTLAAVRAGATHV--SVTVN 216 (259)
T ss_pred HHHHHHHHHHHhcC-----CeEEEEecCCCChHHHHHHHHHHhCCCEE--EEecc
Confidence 55566666665432 45665 66777778888999999975 44444
|
FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox |
| >KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.0039 Score=55.65 Aligned_cols=197 Identities=23% Similarity=0.231 Sum_probs=120.7
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC--CC---eeEEEEecChhhHHH
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LP---LDVHLMIVEPEQRVP 132 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~--~~---idaHLmv~dp~~~i~ 132 (281)
-||| +++.|+.-- ++.....++|+..|-+ .-|-+|- -=+.+-+..+|+..+ .| +...=.+-||....
T Consensus 80 ASPSkG~ik~d~~~a-e~A~~Yak~GAs~iSV-LTe~k~F---kGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~- 153 (289)
T KOG4201|consen 80 ASPSKGIIKLDANAA-EQALAYAKGGASCISV-LTEPKWF---KGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIY- 153 (289)
T ss_pred cCCCCCccccccCHH-HHHHHHHhcCceeeee-ecCchhh---cccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHH-
Confidence 4554 678887544 4445667788887755 3333332 224445555564322 22 33333455665432
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHH
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
...-.|||.|.+-....+...++.+.+..|+.|+..-+.+|......+..++ .+.+|- |+-- .=..|. -.+..
T Consensus 154 ~aR~~GADaVLLIvamLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei--GakvvG---vNNR-nL~sFe-VDlst 226 (289)
T KOG4201|consen 154 EARLKGADAVLLIVAMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI--GAKVVG---VNNR-NLHSFE-VDLST 226 (289)
T ss_pred HHHhcCCceeehHHHHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh--CcEEEe---ecCC-ccceee-echhh
Confidence 3456799999887665556678899999999999999988854444333332 344443 2210 112232 11222
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
-+++-+.+++ ++.+..--||. ++.+..+-++|+..+.||-++.++.||++.+.++..
T Consensus 227 TskL~E~i~k---Dvilva~SGi~tpdDia~~q~~GV~avLVGEslmk~sDp~k~i~eL~~ 284 (289)
T KOG4201|consen 227 TSKLLEGIPK---DVILVALSGIFTPDDIAKYQKAGVKAVLVGESLMKQSDPKKFIHELFG 284 (289)
T ss_pred HHHHHhhCcc---ceEEEeccCCCCHHHHHHHHHcCceEEEecHHHHhccCHHHHHHHHhc
Confidence 2333333332 34444455665 999999999999999999999999999999988754
|
|
| >cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.013 Score=55.49 Aligned_cols=149 Identities=14% Similarity=0.120 Sum_probs=89.6
Q ss_pred HHHHcCcCC-CCCeeEEEEec-----ChhhHHHHHHHcCCCEEEEccccc-------ccccHH---HHHHHHHHc-CCcE
Q 023494 106 VVDALRPVT-DLPLDVHLMIV-----EPEQRVPDFIKAGADIVSVHCEQS-------STIHLH---RTLNQIKDL-GAKA 168 (281)
Q Consensus 106 ~I~~ir~~t-~~~idaHLmv~-----dp~~~i~~~~~aGAd~Itvh~Ea~-------~~~~i~---~~l~~ik~~-G~k~ 168 (281)
.++.+|+.+ +.|+.+-+-+. ++..+.+....++||.+-+|.... ...+.. +.++.+++. ++.+
T Consensus 102 ~~~~vr~~~~~~p~~~Nl~~~~~~~~~~~~~~~~i~~~~adalel~l~~~q~~~~~~~~~df~~~~~~i~~l~~~~~vPV 181 (326)
T cd02811 102 SFTVVREAPPNGPLIANLGAVQLNGYGVEEARRAVEMIEADALAIHLNPLQEAVQPEGDRDFRGWLERIEELVKALSVPV 181 (326)
T ss_pred HHHHHHHhCCCceEEeecCccccCCCCHHHHHHHHHhcCCCcEEEeCcchHhhcCCCCCcCHHHHHHHHHHHHHhcCCCE
Confidence 445555553 47766665553 344444444457899999996320 112344 567777765 6666
Q ss_pred EEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCC--------CC--------Ccc---chhHHHHHHHHHHHhhhcCCCC
Q 023494 169 GVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGF--------GG--------QSF---IESQVKKISDLRRMCLEKGVNP 227 (281)
Q Consensus 169 Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~--------~G--------Q~f---~~~~l~kI~~lr~l~~~~~~~~ 227 (281)
.+=.... +..+..+.+.+ .+|.|.+-+ .-|. .+ ..+ ...+.+.|.++++... ++
T Consensus 182 ivK~~g~g~s~~~a~~l~~~Gvd~I~vsG-~GGt~~~~ie~~r~~~~~~~~~~~~~~~g~~t~~~l~~~~~~~~----~i 256 (326)
T cd02811 182 IVKEVGFGISRETAKRLADAGVKAIDVAG-AGGTSWARVENYRAKDSDQRLAEYFADWGIPTAASLLEVRSALP----DL 256 (326)
T ss_pred EEEecCCCCCHHHHHHHHHcCCCEEEECC-CCCCcccccccccccccccccccccccccccHHHHHHHHHHHcC----CC
Confidence 6644332 56676766655 389998743 2120 00 111 1123445555555432 47
Q ss_pred eEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 228 WIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 228 ~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|.++|||. ...+.+++.+|||.+-+|+++..
T Consensus 257 pIiasGGIr~~~dv~kal~lGAd~V~i~~~~L~ 289 (326)
T cd02811 257 PLIASGGIRNGLDIAKALALGADLVGMAGPFLK 289 (326)
T ss_pred cEEEECCCCCHHHHHHHHHhCCCEEEEcHHHHH
Confidence 899999998 77888999999999999998654
|
Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway. |
| >PRK09282 pyruvate carboxylase subunit B; Validated | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.015 Score=59.26 Aligned_cols=173 Identities=16% Similarity=0.182 Sum_probs=108.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeC-cccccc---c-CCHHHHHHcCcC-CCCCeeEEEEecCh-----------hhHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDG-RFVPNI---T-IGPLVVDALRPV-TDLPLDVHLMIVEP-----------EQRVP 132 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~---~-~G~~~I~~ir~~-t~~~idaHLmv~dp-----------~~~i~ 132 (281)
.+....++.+.++|++.+++- -| +|--.+ . --.+.++.+|+. ++.++-+.+-..|. ..+++
T Consensus 26 ~d~l~ia~~l~~~G~~~iE~~--ggatfd~~~rfl~edp~e~l~~l~~~~~~~~l~~l~Rg~N~~gy~~ypd~vv~~~v~ 103 (592)
T PRK09282 26 EDMLPIAEKLDKVGFWSLEVW--GGATFDVCIRYLNEDPWERLRKLKKALPNTPLQMLLRGQNLVGYRHYPDDVVEKFVE 103 (592)
T ss_pred HHHHHHHHHHHHcCCCEEEec--CCccchhhcccCCccHHHHHHHHHHhCCCCEEEEEeccccccccccccchhhHHHHH
Confidence 344556677788899988763 22 221111 1 123446666665 56666665444332 23578
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCC
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ 203 (281)
.+.++|.|.+.+-.......++...++.+|+.|+.+...+ .|-.+++.+.+++. .+|.|.+- -..|.
T Consensus 104 ~A~~~Gvd~irif~~lnd~~n~~~~i~~ak~~G~~v~~~i~~t~~p~~t~~~~~~~a~~l~~~Gad~I~i~----Dt~G~ 179 (592)
T PRK09282 104 KAAENGIDIFRIFDALNDVRNMEVAIKAAKKAGAHVQGTISYTTSPVHTIEKYVELAKELEEMGCDSICIK----DMAGL 179 (592)
T ss_pred HHHHCCCCEEEEEEecChHHHHHHHHHHHHHcCCEEEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEEC----CcCCC
Confidence 8899999988776543234568888999999999887554 44445555555443 26777552 23344
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.......+.++.+++.+ +.+|.+ |.|....|.-..+++|||++=.
T Consensus 180 ~~P~~~~~lv~~lk~~~-----~~pi~~H~Hnt~Gla~An~laAv~aGad~vD~ 228 (592)
T PRK09282 180 LTPYAAYELVKALKEEV-----DLPVQLHSHCTSGLAPMTYLKAVEAGVDIIDT 228 (592)
T ss_pred cCHHHHHHHHHHHHHhC-----CCeEEEEEcCCCCcHHHHHHHHHHhCCCEEEe
Confidence 33344455566666554 256776 9999999999999999997643
|
|
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.026 Score=51.89 Aligned_cols=164 Identities=21% Similarity=0.201 Sum_probs=99.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCC-HHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-PLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G-~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
.-.+.++.|.+.|++.|++ |. |...-. .+.++.+.+.. ...+.+++ ..+ .+.++.+.++|++.|.+..-.
T Consensus 23 ~k~~i~~~L~~~Gv~~IEv----G~--P~~~~~~~~~~~~l~~~~~~~~v~~~~-r~~-~~di~~a~~~g~~~i~i~~~~ 94 (262)
T cd07948 23 DKIEIAKALDAFGVDYIEL----TS--PAASPQSRADCEAIAKLGLKAKILTHI-RCH-MDDARIAVETGVDGVDLVFGT 94 (262)
T ss_pred HHHHHHHHHHHcCCCEEEE----EC--CCCCHHHHHHHHHHHhCCCCCcEEEEe-cCC-HHHHHHHHHcCcCEEEEEEec
Confidence 3345667888999999988 32 432111 12344443321 12333322 233 236888999999998885411
Q ss_pred c--------------ccccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 S--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~--------------~~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+ ..+.+.+.++.+|+.|+++.+.+. -.+|.+.+.++.+. +|.|.+ +-..|.....
T Consensus 95 S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l----~Dt~G~~~P~ 170 (262)
T cd07948 95 SPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGI----ADTVGIATPR 170 (262)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEE----CCcCCCCCHH
Confidence 0 123355677888899998887653 33566666665543 565544 3334554545
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
++.+.++.+++.. +.+|.+ |-|....|.-..+++|++.+
T Consensus 171 ~v~~~~~~~~~~~-----~~~i~~H~Hn~~Gla~an~~~a~~aG~~~v 213 (262)
T cd07948 171 QVYELVRTLRGVV-----SCDIEFHGHNDTGCAIANAYAALEAGATHI 213 (262)
T ss_pred HHHHHHHHHHHhc-----CCeEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 5566666666543 245665 77888889999999999964
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.016 Score=52.88 Aligned_cols=175 Identities=16% Similarity=0.114 Sum_probs=109.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
...+.+-..|.||+-+|..-|.|-. .-=...++.++. .+....|-+--.||. .+..+.++||+.|.++.-. +.++
T Consensus 24 ~~~e~~a~~G~D~v~iD~EHg~~~~--~~~~~~~~a~~~-~g~~~~VRvp~~~~~-~i~r~LD~Ga~gIivP~v~-taee 98 (249)
T TIGR03239 24 ITTEVLGLAGFDWLLLDGEHAPNDV--LTFIPQLMALKG-SASAPVVRPPWNEPV-IIKRLLDIGFYNFLIPFVE-SAEE 98 (249)
T ss_pred HHHHHHHhcCCCEEEEecccCCCCH--HHHHHHHHHHhh-cCCCcEEECCCCCHH-HHHHHhcCCCCEEEecCcC-CHHH
Confidence 4456667789999999988774321 111233333333 344445544334543 6788999999999988553 2455
Q ss_pred HHHHHHHH--------------------------HHcC--CcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----cCC
Q 023494 154 LHRTLNQI--------------------------KDLG--AKAGVVLNPATSLSAIECVLD--VVDLVLIMSV----NPG 199 (281)
Q Consensus 154 i~~~l~~i--------------------------k~~G--~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV----~pG 199 (281)
.+++++.+ +..+ ..+.+.|....-++.+++++. .+|.+.+.+. .-|
T Consensus 99 a~~~v~a~kypP~G~Rg~~~~~r~~~y~~~~~y~~~~n~~~~vi~~IEt~~av~n~~eI~av~gvd~l~iG~~DLs~slG 178 (249)
T TIGR03239 99 AERAVAATRYPPEGIRGVSVSHRSNRYGTVPDYFATINDNITVLVQIESQKGVDNVDEIAAVDGVDGIFVGPSDLAAALG 178 (249)
T ss_pred HHHHHHHcCCCCCCcCCCCcchhhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHHHcC
Confidence 55555322 2222 234444544344567777764 4888887532 335
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
..++...|+...-++++......+|. ...+ ..-+++.++..++.|++.+++|+.
T Consensus 179 ~~~~~~~~~v~~a~~~v~~aa~a~G~--~~g~-~~~~~~~~~~~~~~G~~~~~~~~D 232 (249)
T TIGR03239 179 HLGNPNHPDVQKAIRHIFDRAAAHGK--PCGI-LAPVEADARRYLEWGATFVAVGSD 232 (249)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCC--CEEE-cCCCHHHHHHHHHcCCCEEEEhHH
Confidence 55666668887777777777766543 3322 345678899999999999999965
|
In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which |
| >PLN02363 phosphoribosylanthranilate isomerase | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.052 Score=49.82 Aligned_cols=169 Identities=16% Similarity=0.203 Sum_probs=95.6
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CCCCe-eEEEEec-ChhhHHHHHHHcCCCEEE
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TDLPL-DVHLMIV-EPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~~~i-daHLmv~-dp~~~i~~~~~aGAd~It 143 (281)
+.++++ ++.+.+.|+|++=+ + |.|.- ...++..++|.+. +...+ -|=+.++ ++....+.+.+.|.|.|-
T Consensus 54 it~~ed-a~~a~~~GaD~iGf--I---f~~~SpR~Vs~e~a~~I~~~l~~~~~~~VgVfv~~~~~~I~~~~~~~~ld~VQ 127 (256)
T PLN02363 54 ITSARD-AAMAVEAGADFIGM--I---LWPKSKRSISLSVAKEISQVAREGGAKPVGVFVDDDANTILRAADSSDLELVQ 127 (256)
T ss_pred CCcHHH-HHHHHHcCCCEEEE--e---cCCCCCCcCCHHHHHHHHHhccccCccEEEEEeCCCHHHHHHHHHhcCCCEEE
Confidence 345544 66677789998743 2 33431 2456667777553 22111 1333554 445556677889999999
Q ss_pred EcccccccccHHHHHHHHHHcCCcEEEEECCCCCH---HHHHH-hhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHH
Q 023494 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIEC-VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 144 vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i---e~~~~-~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
+|... +. +.++.++. ++++.-+++..... +.+.+ +...+|++++=+ ..|-.|..|.-..+.. ..+
T Consensus 128 LHG~e----~~-~~~~~l~~-~~~iikai~v~~~~~~~~~~~~~~~~~~D~~LlDs-~~GGtG~t~DW~~l~~----~~~ 196 (256)
T PLN02363 128 LHGNG----SR-AAFSRLVR-ERKVIYVLNANEDGKLLNVVPEEDCHLADWILVDS-ATGGSGKGFNWQNFKL----PSV 196 (256)
T ss_pred ECCCC----CH-HHHHHhhc-CCcEEEEEEECchHHHHHHHHhhccccCCEEEEeC-CCCCCCCccCHHHhcc----ccc
Confidence 99863 12 23444442 35665566554332 22322 223478887743 2355677775432210 011
Q ss_pred hhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEccccc
Q 023494 220 CLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVF 258 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf 258 (281)
. ...++.+.|||+++|+.++++ .++..+=+-|.+=
T Consensus 197 ~----~~~p~iLAGGL~peNV~~ai~~~~P~GVDVsSGVE 232 (256)
T PLN02363 197 R----SRNGWLLAGGLTPENVHEAVSLLKPTGVDVSSGIC 232 (256)
T ss_pred c----cCCCEEEECCCCHHHHHHHHHhcCCcEEEeCCccc
Confidence 0 123567999999999999876 5666666666664
|
|
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.093 Score=47.40 Aligned_cols=195 Identities=19% Similarity=0.241 Sum_probs=127.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-+.-+....++++|+|-|-+ |--+.- -.-.+-+..||+....++.. -..-..++++.+.+..++.+|+-.
T Consensus 19 ~~Pdpv~aA~~a~~aGAdgITv-----HlReDrRHI~d~Dv~~L~~~~~~~lNl--E~a~t~em~~ia~~~kP~~vtLVP 91 (234)
T cd00003 19 NYPDPVEAALLAEKAGADGITV-----HLREDRRHIQDRDVRLLRELVRTELNL--EMAPTEEMLEIALEVKPHQVTLVP 91 (234)
T ss_pred CCCCHHHHHHHHHHcCCCEEEe-----cCCCCcCcCCHHHHHHHHHHcCCCEEe--ccCCCHHHHHHHHHCCCCEEEECC
Confidence 3446667778889999997644 211221 23345677777765555554 333334688999999999999998
Q ss_pred ccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC-CCCCccchhHHH
Q 023494 147 EQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG-FGGQSFIESQVK 211 (281)
Q Consensus 147 Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG-~~GQ~f~~~~l~ 211 (281)
|.- ..+.+..+++.+++.|+++.+.+.|+ .+.++.-.+ .+|.|-+.|-.=. ..++.-...-++
T Consensus 92 Ekr~E~TTegGldv~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VELhTG~Ya~a~~~~~~~~el~ 169 (234)
T cd00003 92 EKREELTTEGGLDVAGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHTGPYANAYDKAEREAELE 169 (234)
T ss_pred CCCCCccCCccchhhcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHH
Confidence 742 11237889999999999999999986 333433322 4899987543211 011211233477
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC---CCHHHHHHHHHHh
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA---KDYAEAIKGIKTS 273 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a---~dp~~~~~~l~~~ 273 (281)
+|....++..+. ++.+...-|+|.+|+..+.+ -+..=+-+|.+|+.. --.++++++|++.
T Consensus 170 ~i~~aa~~a~~~--GL~VnAGHgLny~Nv~~i~~ip~i~ElnIGHsiia~Al~~Gl~~AV~~m~~~ 233 (234)
T cd00003 170 RIAKAAKLAREL--GLGVNAGHGLNYENVKPIAKIPGIAELNIGHAIISRALFVGLEEAVREMKDL 233 (234)
T ss_pred HHHHHHHHHHHc--CCEEecCCCCCHHHHHHHHhCCCCeEEccCHHHHHHHHHHhHHHHHHHHHHh
Confidence 777777766554 56788899999999998855 355667888887742 2355677777664
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.12 E-value=0.022 Score=51.62 Aligned_cols=172 Identities=19% Similarity=0.320 Sum_probs=108.1
Q ss_pred HHHHHHHHcCCCeEEEE-eeeCcccccccCCHHHHHH-------cCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 74 EQVKAVELAGCDWIHVD-VMDGRFVPNITIGPLVVDA-------LRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiD-ImDG~fvpn~~~G~~~I~~-------ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
++..+++++|+|-+=+- --|-.|.+ ..+++++.. +++.-..|+-+-+.=+|+..-+..+...||+.|-+-
T Consensus 38 ~dA~~leegG~DavivEN~gD~Pf~k--~v~~~tvaaMa~iv~~v~r~v~iPvGvNVLrNd~vaA~~IA~a~gA~FIRVN 115 (263)
T COG0434 38 RDAAALEEGGVDAVIVENYGDAPFLK--DVGPETVAAMAVIVREVVREVSIPVGVNVLRNDAVAALAIAYAVGADFIRVN 115 (263)
T ss_pred HHHHHHHhCCCcEEEEeccCCCCCCC--CCChHHHHHHHHHHHHHHHhccccceeeeeccccHHHHHHHHhcCCCEEEEE
Confidence 44567889999976332 22445555 556666544 344345899999999999877777788899998865
Q ss_pred cccc---c-----cccHHHHHHHHHHcCCcEEE--EECCC--C-----CHHH-HHHhhc--cCCEEEEEeecCCC-CCCc
Q 023494 146 CEQS---S-----TIHLHRTLNQIKDLGAKAGV--VLNPA--T-----SLSA-IECVLD--VVDLVLIMSVNPGF-GGQS 204 (281)
Q Consensus 146 ~Ea~---~-----~~~i~~~l~~ik~~G~k~Gl--ai~p~--t-----~ie~-~~~~l~--~vD~IlvmsV~pG~-~GQ~ 204 (281)
.-+. + .....++++.-+..+.++-+ .+.+. . +++. .+.-+. .+|-|.+- |. +|.+
T Consensus 116 ~~tg~~~tdqGiieg~A~e~~r~r~~L~~~v~vlADv~VKHa~~l~~~~~~~~v~dtver~~aDaVI~t----G~~TG~~ 191 (263)
T COG0434 116 VLTGAYATDQGIIEGNAAELARYRARLGSRVKVLADVHVKHAVHLGNRSLEEAVKDTVERGLADAVIVT----GSRTGSP 191 (263)
T ss_pred eeeceEecccceecchHHHHHHHHHhccCCcEEEeecchhcccccCCcCHHHHHHHHHHccCCCEEEEe----cccCCCC
Confidence 3321 0 11355666666666544332 33222 2 3332 222122 37888763 32 2433
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
- .++.|+.+++.. +.++-|.-|++++|+.++++. ||.+|+||+|=+.
T Consensus 192 ~---d~~el~~a~~~~-----~~pvlvGSGv~~eN~~~~l~~-adG~IvgT~lK~~ 238 (263)
T COG0434 192 P---DLEELKLAKEAV-----DTPVLVGSGVNPENIEELLKI-ADGVIVGTSLKKG 238 (263)
T ss_pred C---CHHHHHHHHhcc-----CCCEEEecCCCHHHHHHHHHH-cCceEEEEEEccC
Confidence 3 344555555543 267889999999999999998 9999999998754
|
|
| >COG0214 SNZ1 Pyridoxine biosynthesis enzyme [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.015 Score=52.53 Aligned_cols=193 Identities=21% Similarity=0.292 Sum_probs=110.5
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHH--HHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFI 135 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~--~~~ 135 (281)
.|..+- ++-+.++++|+ +-+|--.-+|- -.-.|..|++|-....+|+-+..-+-+ |++ .+-
T Consensus 25 MDV~n~-EQA~IAE~aGA----vAVMaLervPaDiR~aGGVaRMaDp~~i~eim~aVsIPVMAKvRIGH---~~EA~iLe 96 (296)
T COG0214 25 MDVVNA-EQARIAEEAGA----VAVMALERVPADIRAAGGVARMADPKMIEEIMDAVSIPVMAKVRIGH---FVEAQILE 96 (296)
T ss_pred EEecCH-HHHHHHHhcCc----eeEeehhhCcHHHHhccCccccCCHHHHHHHHHhcccceeeeeecch---hHHHHHHH
Confidence 466665 45678888886 34454333442 133688888887765688877554444 544 344
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH-HHHHHhhccCCEEEEEeecCCCCCC--c--cchhHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLIMSVNPGFGGQ--S--FIESQV 210 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-e~~~~~l~~vD~IlvmsV~pG~~GQ--~--f~~~~l 210 (281)
..|.|+|- |+. .-++......|.|...++=.+.. ...+ |.++.+.+.+-+|=- --++|.+.- . -.....
T Consensus 97 algVD~ID---ESE-VLTPAD~~~Hi~K~~FtVPFVcG-arnLgEAlRRI~EGAaMIRT-KGEaGTGnv~eAVrHmr~i~ 170 (296)
T COG0214 97 ALGVDMID---ESE-VLTPADEEFHINKWKFTVPFVCG-ARNLGEALRRISEGAAMIRT-KGEAGTGNVVEAVRHMRKIN 170 (296)
T ss_pred HhCCCccc---ccc-ccCCCchhhhcchhhcccceecC-cCcHHHHHHHHhhhHHHHhc-CCCCCCCcHHHHHHHHHHHH
Confidence 67999883 431 22333344445555555444433 3344 556666555544411 124555430 0 111112
Q ss_pred HHHHHHHHHh---------------------hhcCCCCeEE--EecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHH
Q 023494 211 KKISDLRRMC---------------------LEKGVNPWIE--VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEA 266 (281)
Q Consensus 211 ~kI~~lr~l~---------------------~~~~~~~~I~--VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~ 266 (281)
..|++++.+. .+.| .+++. ..|||- +.....+.+.|+|.+-|||.||+++||++.
T Consensus 171 ~eI~~l~~~~edel~~~Ak~~~~p~elv~~~~~~g-rLPVvnFAAGGvATPADAALMM~LGadGVFVGSGIFKS~~P~~~ 249 (296)
T COG0214 171 GEIRRLQSMTEDELYVVAKELQAPYELVKEVAKLG-RLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKR 249 (296)
T ss_pred HHHHHHHccCHHHHHHHHHHhCChHHHHHHHHHhC-CCCeEeecccCcCChhHHHHHHHhCCCeEEecccccCCCCHHHH
Confidence 2222222111 1111 12322 578886 889999999999999999999999999999
Q ss_pred HHHHHHhc
Q 023494 267 IKGIKTSK 274 (281)
Q Consensus 267 ~~~l~~~~ 274 (281)
++.+-+..
T Consensus 250 A~AIV~A~ 257 (296)
T COG0214 250 AKAIVEAT 257 (296)
T ss_pred HHHHHHHH
Confidence 98887643
|
|
| >cd02922 FCB2_FMN Flavocytochrome b2 (FCB2) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.019 Score=54.91 Aligned_cols=190 Identities=17% Similarity=0.175 Sum_probs=106.5
Q ss_pred CceEeEEEecc--CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEec-Chh---h
Q 023494 57 DIIVSPSILSA--NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIV-EPE---Q 129 (281)
Q Consensus 57 ~~~i~pSila~--D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~-dp~---~ 129 (281)
.+.|+|.=+.. .+.--....+.+.+.|+-+. ++.. +...+.|.+-. .++.++-..|.+. |.. .
T Consensus 66 Pi~iaP~~~~~~~~~~ge~~~AraA~~~gi~~~---------lss~s~~s~e~v~~~~-~~~~~~w~Qly~~~d~~~~~~ 135 (344)
T cd02922 66 PFFISPAALAKLAHPDGELNLARAAGKHGILQM---------ISTNASCSLEEIVDAR-PPDQPLFFQLYVNKDRTKTEE 135 (344)
T ss_pred ceeeChHHHhhhCCchHHHHHHHHHHHcCCCEE---------ecCcccCCHHHHHHhc-CCCCcEEEEEeecCCHHHHHH
Confidence 56777766433 22111233345556666432 1222 22334433211 1334555666553 322 3
Q ss_pred HHHHHHHcCCCEEEEccccccc-----------------------------------------ccHHHHHHHHHHcCCcE
Q 023494 130 RVPDFIKAGADIVSVHCEQSST-----------------------------------------IHLHRTLNQIKDLGAKA 168 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~-----------------------------------------~~i~~~l~~ik~~G~k~ 168 (281)
.++.+.++|++.+.+|....-. ....+.++++++.- +.
T Consensus 136 l~~ra~~ag~~alvltvD~p~~g~r~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~-~~ 214 (344)
T cd02922 136 LLKRAEKLGAKAIFLTVDAPVLGKRERDERLKAEEAVSDGPAGKKTKAKGGGAGRAMSGFIDPTLTWDDIKWLRKHT-KL 214 (344)
T ss_pred HHHHHHHcCCCEEEEECCCCCcCcchhhhhhcCCcCccccccccccccccchHHHHHhhccCCCCCHHHHHHHHHhc-CC
Confidence 5677889999999999664200 01124566666643 22
Q ss_pred EEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc
Q 023494 169 GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 246 (281)
Q Consensus 169 Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a 246 (281)
-+.+..-+..+..+...+ .+|.|.+- -+-|. .....+.+++-|.++++.....+.+++|.+||||. -..+-+++.+
T Consensus 215 PvivKgv~~~~dA~~a~~~G~d~I~vs-nhgG~-~~d~~~~~~~~L~~i~~~~~~~~~~~~vi~~GGIr~G~Dv~kalaL 292 (344)
T cd02922 215 PIVLKGVQTVEDAVLAAEYGVDGIVLS-NHGGR-QLDTAPAPIEVLLEIRKHCPEVFDKIEVYVDGGVRRGTDVLKALCL 292 (344)
T ss_pred cEEEEcCCCHHHHHHHHHcCCCEEEEE-CCCcc-cCCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHc
Confidence 223333345666666655 48999874 22222 11122344555666666554333357899999999 6688899999
Q ss_pred CCcEEEEcccccC
Q 023494 247 GANALVAGSAVFG 259 (281)
Q Consensus 247 GAD~~VvGSaIf~ 259 (281)
|||.+-+|+.++.
T Consensus 293 GA~aV~iG~~~l~ 305 (344)
T cd02922 293 GAKAVGLGRPFLY 305 (344)
T ss_pred CCCEEEECHHHHH
Confidence 9999999998764
|
FCB2 (AKA L-lactate:cytochrome c oxidoreductase) is a respiratory enzyme located in the intermembrane space of fungal mitochondria which catalyzes the oxidation of L-lactate to pyruvate. FCB2 also participates in a short electron-transport chain involving cytochrome c and cytochrome oxidase which ultimately directs the reducing equivalents gained from L-lactate oxidation to oxygen, yielding one molecule of ATP for every L-lactate molecule consumed. FCB2 is composed of 2 domains: a C-terminal flavin-binding domain, which includes the active site for lacate oxidation, and an N-terminal b2-cytochrome domain, required for efficient cytochrome c reduction. FCB2 is a homotetramer and contains two noncovalently bound cofactors, FMN and heme per subunit. |
| >PLN02746 hydroxymethylglutaryl-CoA lyase | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.032 Score=53.40 Aligned_cols=165 Identities=16% Similarity=0.140 Sum_probs=102.5
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCccc-----ccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFV-----PNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fv-----pn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.+.++.|.+.|++.|++ |.|+ |.+.--.+.++.+++..+..+-+ .+-| .+-++.+.++|++.|.+-.-
T Consensus 71 i~ia~~L~~~GV~~IEv----Gs~vspk~vPqmad~~ev~~~i~~~~~~~~~~--l~~n-~~die~A~~~g~~~v~i~~s 143 (347)
T PLN02746 71 VELIQRLVSSGLPVVEA----TSFVSPKWVPQLADAKDVMAAVRNLEGARFPV--LTPN-LKGFEAAIAAGAKEVAVFAS 143 (347)
T ss_pred HHHHHHHHHcCCCEEEE----CCCcCcccccccccHHHHHHHHHhccCCceeE--EcCC-HHHHHHHHHcCcCEEEEEEe
Confidence 35567788999999888 5544 34433345677777644333222 1223 34688899999998877632
Q ss_pred cc--------------ccccHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 148 QS--------------STIHLHRTLNQIKDLGAKAGVVLN-----P---ATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 148 a~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p---~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
++ ..+.+.+.++.+|+.|+++...+. | .++.+.+.++.+. +|.|.+ +-.
T Consensus 144 ~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l----~DT 219 (347)
T PLN02746 144 ASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISL----GDT 219 (347)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEe----cCC
Confidence 11 012345788889999998864442 2 2455555555442 676654 233
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
.|.....++.+.++.+++.++. .+|.+ |-|....|.-..+++||+.|=
T Consensus 220 ~G~a~P~~v~~lv~~l~~~~~~----~~i~~H~Hnd~GlA~AN~lAA~~aGa~~vd 271 (347)
T PLN02746 220 IGVGTPGTVVPMLEAVMAVVPV----DKLAVHFHDTYGQALANILVSLQMGISTVD 271 (347)
T ss_pred cCCcCHHHHHHHHHHHHHhCCC----CeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 4544444555667777665431 24555 888998899999999999863
|
|
| >PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.012 Score=56.47 Aligned_cols=141 Identities=15% Similarity=0.159 Sum_probs=88.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccCCE-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVVDL- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~vD~- 190 (281)
.+++.++|++++.+. .| +.+.+..-++.+.++|+.+.+-+.-... . ..+...++.++.
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~E--td~~i~~Kv~~al~~gl~pIvCiGE~~eer~~g~~~~v~~~Ql~~~l~~v~~~ 165 (355)
T PRK14905 88 PLMLKELGIELVMIGHSERRHVLKE--TDQEENEKVLAALKHGFITLLCIGETLEQKNYNISDEVLRTQLKIGLHGVSAE 165 (355)
T ss_pred HHHHHHcCCCEEEECcccccCcccc--cHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhccCHHHHHHHHHHHHHccCCHh
Confidence 568899999999875 33 2445667777888999998887753211 1 112222222210
Q ss_pred ---EEEEeecC----CCCCCccch----hHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccc
Q 023494 191 ---VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAV 257 (281)
Q Consensus 191 ---IlvmsV~p----G~~GQ~f~~----~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaI 257 (281)
=++..-+| |.+|+.-.| .+.+.|++. .+...+...+.+|--.|+|+++|+.++ ...++|.+-+|++.
T Consensus 166 ~~~~~vIAYEPvWAIGTgg~~as~~~~~~~~~~Ir~~l~~~~~~~~~~v~ILYGGSV~~~N~~~l~~~~~iDG~LVG~as 245 (355)
T PRK14905 166 QLPHLFIAYEPVWAIGEGGIPASAEYADEKHAIIKQCLFELFAEESKKIPVLYGGSVNLENANELIMKPHIDGLFIGRSA 245 (355)
T ss_pred hcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEeCcCCHHHHHHHhcCCCCCEEEechhh
Confidence 02233456 555665544 334444433 233222223568889999999999976 56779999999999
Q ss_pred cCCCCHHHHHHHHHHh
Q 023494 258 FGAKDYAEAIKGIKTS 273 (281)
Q Consensus 258 f~a~dp~~~~~~l~~~ 273 (281)
.+++++.+.++.+.+.
T Consensus 246 l~~~~f~~Ii~~~~~~ 261 (355)
T PRK14905 246 WDAQCFHALIADALKA 261 (355)
T ss_pred ccHHHHHHHHHHHHHh
Confidence 9888887777666553
|
|
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0075 Score=60.03 Aligned_cols=130 Identities=22% Similarity=0.367 Sum_probs=84.6
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhc-cCCEEEEEeecCC-------
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLD-VVDLVLIMSVNPG------- 199 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~-~vD~IlvmsV~pG------- 199 (281)
+.++.+.++|+|.|.+-..........+.++++|+.--.+-+.- |-.|.- ..+.+++ .+|.|-+ ++=||
T Consensus 230 ~~a~~Lv~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p~~~v~agnv~t~~-~a~~l~~aGad~v~v-gig~gsictt~~ 307 (479)
T PRK07807 230 AKARALLEAGVDVLVVDTAHGHQEKMLEALRAVRALDPGVPIVAGNVVTAE-GTRDLVEAGADIVKV-GVGPGAMCTTRM 307 (479)
T ss_pred HHHHHHHHhCCCEEEEeccCCccHHHHHHHHHHHHHCCCCeEEeeccCCHH-HHHHHHHcCCCEEEE-CccCCccccccc
Confidence 46777889999998875443223567788999998643444444 555544 3445544 5899864 22232
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
..|... | .+.-|.++.+...+ .+.++..||||. ++.+.+++.+|||.+++|+.+-.. |.|.
T Consensus 308 ~~~~~~-p-~~~av~~~~~~~~~--~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~~Espg 370 (479)
T PRK07807 308 MTGVGR-P-QFSAVLECAAAARE--LGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGTYESPG 370 (479)
T ss_pred ccCCch-h-HHHHHHHHHHHHHh--cCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccCccCCC
Confidence 222111 2 23444444444333 357888999999 889999999999999999998754 4554
|
|
| >TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.0019 Score=57.46 Aligned_cols=77 Identities=14% Similarity=0.266 Sum_probs=55.6
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|.+..+.|-+. +|.+.+...+.-+.|+.-. ++.|+++++.. +.++.++|||+ .+.+..+.++|||.+|+
T Consensus 29 dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~---~~~i~~i~~~~-----~~pi~~ggGI~~~ed~~~~~~~Ga~~vvl 100 (230)
T TIGR00007 29 DPVEAAKKWEEEGAERIHVVDLDGAKEGGPVN---LPVIKKIVRET-----GVPVQVGGGIRSLEDVEKLLDLGVDRVII 100 (230)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCccccCCCCc---HHHHHHHHHhc-----CCCEEEeCCcCCHHHHHHHHHcCCCEEEE
Confidence 466766666443 7888887666444554433 34455555543 36899999999 79999999999999999
Q ss_pred cccccCC
Q 023494 254 GSAVFGA 260 (281)
Q Consensus 254 GSaIf~a 260 (281)
|++.++.
T Consensus 101 gs~~l~d 107 (230)
T TIGR00007 101 GTAAVEN 107 (230)
T ss_pred ChHHhhC
Confidence 9999863
|
Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317). |
| >cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0074 Score=56.61 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=60.4
Q ss_pred HHHHHHHHHHc-C--CcEEEEECCCC-CHHHHHHhhc----cCCEEEEEeecCC-CCCCccchhHHHHHHHHHHHhhhcC
Q 023494 154 LHRTLNQIKDL-G--AKAGVVLNPAT-SLSAIECVLD----VVDLVLIMSVNPG-FGGQSFIESQVKKISDLRRMCLEKG 224 (281)
Q Consensus 154 i~~~l~~ik~~-G--~k~Glai~p~t-~ie~~~~~l~----~vD~IlvmsV~pG-~~GQ~f~~~~l~kI~~lr~l~~~~~ 224 (281)
..+.++.+++. . .++-+.+..-. .++...+..+ .+|.|++= +.+ ..| ...+.++++++.++..+
T Consensus 170 ~~~A~~~~~~~~p~~~~i~vevdt~~~~v~eal~~~~~~~~~~d~I~lD--n~~~~~G-----~~~~~~~~~~~~l~~~g 242 (302)
T cd01571 170 QVEAWKAFDETYPEDVPRIALIDTFNDEKEEALKAAKALGDKLDGVRLD--TPSSRRG-----VFRYLIREVRWALDIRG 242 (302)
T ss_pred HHHHHHHHHHHCCCcCCeEEEEeecCcchHHHHHHHHHhCCCCcEEEEC--CCCCCCC-----CHHHHHHHHHHHHHhCC
Confidence 34456666653 2 45555443322 2333333322 37877651 111 112 23333445555554443
Q ss_pred -CCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 225 -VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 225 -~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+..|++-||||++++.++.+.|+|++-+||.+.++
T Consensus 243 ~~~~~ieaSGgI~~~~i~~~a~~gvD~isvGs~~~~~ 279 (302)
T cd01571 243 YKHVKIFVSGGLDEEDIKELEDVGVDAFGVGTAISKA 279 (302)
T ss_pred CCCeEEEEeCCCCHHHHHHHHHcCCCEEECCcccCCC
Confidence 457899999999999999999999999999998865
|
Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. |
| >KOG1606 consensus Stationary phase-induced protein, SOR/SNZ family [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.0057 Score=54.46 Aligned_cols=190 Identities=19% Similarity=0.264 Sum_probs=110.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHH--HHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPD--FIK 136 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~--~~~ 136 (281)
|..+- ++.+.++++|+=. +|--.-+|. -.-.|.+|++|+....+|+.+..-+-+ |++. +-.
T Consensus 27 dVv~~-eQA~iAE~aGACa----VmalervPadiR~~GgV~RMsDP~mIKei~~aVsiPVMAk~RiGH---FVEAQIlE~ 98 (296)
T KOG1606|consen 27 DVVNA-EQARIAEEAGACA----VMALERVPADIRAQGGVARMSDPRMIKEIKNAVSIPVMAKVRIGH---FVEAQILEA 98 (296)
T ss_pred EecCH-HHHHHHHhcCcce----EeeeccCCHhHHhcCCeeecCCHHHHHHHHHhccchhhhhhhhhh---hhHHHHHHH
Confidence 44444 4456677777532 222222331 133689999998876677766443333 6653 345
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
.|.|||- |+ ..-++...-..|.+++.++=.......--|.++.+-+.+-+|-.- -+.|.+ -.-+..+.++.+
T Consensus 99 l~vDYiD---ES-Evlt~AD~~hhI~KhnFkvPFvCG~rdlGEALRRI~EGAAMIRtk-GeagTG---~v~EaVkhvr~i 170 (296)
T KOG1606|consen 99 LGVDYID---ES-EVLTPADWDHHIEKHNFKVPFVCGCRDLGEALRRIREGAAMIRTK-GEAGTG---DVSEAVKHVRSI 170 (296)
T ss_pred hccCccc---hh-hhcccccccchhhhhcCcCceeeccccHHHHHHHHhhchhhheec-cccCCC---cHHHHHHHHHHH
Confidence 6889883 43 133455666777888888766665444446666655544444211 122322 222222222221
Q ss_pred -------HHH------------------h---hhcCCCCeEE--EecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHH
Q 023494 217 -------RRM------------------C---LEKGVNPWIE--VDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 217 -------r~l------------------~---~~~~~~~~I~--VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~ 265 (281)
+++ + .+.| .+++. ..||+. +..+..+.+.|.|.+-+||.||++.||.+
T Consensus 171 ~geir~~~~m~~dev~t~Ak~i~aP~dLv~~t~q~G-rlPVV~FAaGGvaTPADAALmMQLGCdGVFVGSgiFks~dP~k 249 (296)
T KOG1606|consen 171 NGEIRVLKNMDDDEVFTFAKEIAAPYDLVKQTKQLG-RLPVVNFAAGGVATPADAALMMQLGCDGVFVGSGIFKSGDPVK 249 (296)
T ss_pred HHHHHHHHcCCHHHHHHHHHHhcCcHHHHHHHHHcC-CCceEEecccCcCChhHHHHHHHcCCCeEEeccccccCCCHHH
Confidence 110 0 1111 12221 478887 88999999999999999999999999999
Q ss_pred HHHHHHHhc
Q 023494 266 AIKGIKTSK 274 (281)
Q Consensus 266 ~~~~l~~~~ 274 (281)
.++.+-+..
T Consensus 250 ~a~aiVqAv 258 (296)
T KOG1606|consen 250 RARAIVQAV 258 (296)
T ss_pred HHHHHHHHH
Confidence 888876643
|
|
| >PRK12330 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=97.06 E-value=0.024 Score=56.69 Aligned_cols=173 Identities=15% Similarity=0.171 Sum_probs=110.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccc----ccC-CHHHHHHcCcC-CCCCeeEEEEec-------Ch----hhHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPN----ITI-GPLVVDALRPV-TDLPLDVHLMIV-------EP----EQRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn----~~~-G~~~I~~ir~~-t~~~idaHLmv~-------dp----~~~i~~ 133 (281)
++....+.+.+.|++.|++- =|...+. ... -.+.++.+|+. ++.++-..+--. -| ..+++.
T Consensus 28 d~l~ia~~ld~~G~~siE~~--GGatfd~~~rfl~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~ 105 (499)
T PRK12330 28 DMVGACEDIDNAGYWSVECW--GGATFDACIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEK 105 (499)
T ss_pred HHHHHHHHHHhcCCCEEEec--CCcchhhhhcccCCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHH
Confidence 44455567778899887763 2211121 122 23457888775 666666544211 12 246888
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE----EECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV----VLNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl----ai~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
.+++|.|.+.+-.......++...++.+|+.|..+-. .++|....+.+.++... +|.|.+ +-..|-.
T Consensus 106 a~~~Gidi~RIfd~lndv~nl~~ai~~vk~ag~~~~~~i~yt~sp~~t~e~~~~~a~~l~~~Gad~I~I----kDtaGll 181 (499)
T PRK12330 106 SAENGMDVFRVFDALNDPRNLEHAMKAVKKVGKHAQGTICYTVSPIHTVEGFVEQAKRLLDMGADSICI----KDMAALL 181 (499)
T ss_pred HHHcCCCEEEEEecCChHHHHHHHHHHHHHhCCeEEEEEEEecCCCCCHHHHHHHHHHHHHcCCCEEEe----CCCccCC
Confidence 8999999977664432346788899999999997733 34777777766666542 676654 2334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
......+.++.+++.++ .+++|.+ |-|....|.-..+++|||++=
T Consensus 182 ~P~~~~~LV~~Lk~~~~---~~ipI~~H~Hnt~GlA~An~laAieAGad~vD 230 (499)
T PRK12330 182 KPQPAYDIVKGIKEACG---EDTRINLHCHSTTGVTLVSLMKAIEAGVDVVD 230 (499)
T ss_pred CHHHHHHHHHHHHHhCC---CCCeEEEEeCCCCCcHHHHHHHHHHcCCCEEE
Confidence 44455666777776542 1356776 678888899999999999763
|
|
| >PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.0014 Score=59.04 Aligned_cols=75 Identities=16% Similarity=0.312 Sum_probs=52.6
Q ss_pred CCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 176 t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.|.+.++.|.+.++.+.+...+--..|+.-+ ++-++++++.. +.++.++|||+ .+.++.+.++|+|.+|+|
T Consensus 31 dp~~~a~~~~~~~~~l~ivDldga~~g~~~n---~~~i~~i~~~~-----~~pv~~gGGIrs~edv~~l~~~G~~~vivG 102 (228)
T PRK04128 31 DPVEIALRFSEYVDKIHVVDLDGAFEGKPKN---LDVVKNIIRET-----GLKVQVGGGLRTYESIKDAYEIGVENVIIG 102 (228)
T ss_pred CHHHHHHHHHHhCCEEEEEECcchhcCCcch---HHHHHHHHhhC-----CCCEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 5677667665557878775554222343333 33344444332 46899999999 889999999999999999
Q ss_pred cccc
Q 023494 255 SAVF 258 (281)
Q Consensus 255 SaIf 258 (281)
++.+
T Consensus 103 taa~ 106 (228)
T PRK04128 103 TKAF 106 (228)
T ss_pred chhc
Confidence 9988
|
|
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.013 Score=58.30 Aligned_cols=135 Identities=16% Similarity=0.322 Sum_probs=83.0
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCC-
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ- 203 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ- 203 (281)
.+.++.+.++|+|.|.+-....-.....+.++++|+.-..+-+....--..+..+.+++ .+|.|-+ ++-||. .-+
T Consensus 227 ~~ra~~Lv~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~v-g~g~Gs~~ttr~ 305 (475)
T TIGR01303 227 GGKAKALLDAGVDVLVIDTAHGHQVKMISAIKAVRALDLGVPIVAGNVVSAEGVRDLLEAGANIIKV-GVGPGAMCTTRM 305 (475)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCcHHHHHHHHHHHHHCCCCeEEEeccCCHHHHHHHHHhCCCEEEE-CCcCCccccCcc
Confidence 35677889999999988644322345667888888863233332222234455666655 4899865 233331 000
Q ss_pred --ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHHH
Q 023494 204 --SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYAE 265 (281)
Q Consensus 204 --~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~ 265 (281)
.+-...+.-+.++.+...+. +++|..||||+ +..+.+.+.+|||.+.+||.+-+. |.|.+
T Consensus 306 ~~~~g~~~~~a~~~~~~~~~~~--~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~~espg~ 369 (475)
T TIGR01303 306 MTGVGRPQFSAVLECAAEARKL--GGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGTYESPGD 369 (475)
T ss_pred ccCCCCchHHHHHHHHHHHHHc--CCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhcccccCCCc
Confidence 11111233333343333332 57888999999 889999999999999999998754 44544
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >TIGR02660 nifV_homocitr homocitrate synthase NifV | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.035 Score=53.29 Aligned_cols=181 Identities=19% Similarity=0.201 Sum_probs=111.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+-.+.++.|.+.|++.|++ | .|..+-.. +.++.+++. ++..+.++. -.+ .+.++.+.++|++.|.+..-.
T Consensus 24 ~k~~ia~~L~~~Gv~~IEv----G--~p~~~~~~~e~i~~i~~~~~~~~i~~~~-r~~-~~di~~a~~~g~~~i~i~~~~ 95 (365)
T TIGR02660 24 EKLAIARALDEAGVDELEV----G--IPAMGEEERAVIRAIVALGLPARLMAWC-RAR-DADIEAAARCGVDAVHISIPV 95 (365)
T ss_pred HHHHHHHHHHHcCCCEEEE----e--CCCCCHHHHHHHHHHHHcCCCcEEEEEc-CCC-HHHHHHHHcCCcCEEEEEEcc
Confidence 4445667788999999888 3 36554333 678888654 333333322 123 235788899999998877543
Q ss_pred cc--------------cccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 SS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~~--------------~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
.+ .+.+.+.++.+|+.|.++-+... +.++.+.+.++... +|.|.+ +-..|.....
T Consensus 96 Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l----~DT~G~~~P~ 171 (365)
T TIGR02660 96 SDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVSVGGEDASRADPDFLVELAEVAAEAGADRFRF----ADTVGILDPF 171 (365)
T ss_pred CHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEEEeecCCCCCCHHHHHHHHHHHHHcCcCEEEE----cccCCCCCHH
Confidence 10 12345788899999988766543 33566666666542 676654 3334544444
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGI 270 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l 270 (281)
++.+.++.+++.. +++|++ |-|....|.-..+++||+.+ =+++. ++.+.++.+..+
T Consensus 172 ~v~~lv~~l~~~~-----~v~l~~H~HNd~GlA~ANalaA~~aGa~~v--d~tl~GiGeraGN~~lE~lv~~L 237 (365)
T TIGR02660 172 STYELVRALRQAV-----DLPLEMHAHNDLGMATANTLAAVRAGATHV--NTTVNGLGERAGNAALEEVAMAL 237 (365)
T ss_pred HHHHHHHHHHHhc-----CCeEEEEecCCCChHHHHHHHHHHhCCCEE--EEEeeccccccccCCHHHHHHHH
Confidence 4455666666543 245666 88888889999999999975 22232 234555555555
|
This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase. |
| >cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2 | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.02 Score=54.24 Aligned_cols=126 Identities=19% Similarity=0.200 Sum_probs=79.1
Q ss_pred HHHHcCCCEEEEcccc--------ccc----------------ccHHHHHHHHHHc-C--CcEEEEECC------CCCHH
Q 023494 133 DFIKAGADIVSVHCEQ--------SST----------------IHLHRTLNQIKDL-G--AKAGVVLNP------ATSLS 179 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea--------~~~----------------~~i~~~l~~ik~~-G--~k~Glai~p------~t~ie 179 (281)
.+.++|.|.|-+|.-. ++. .-+.++++++|+. | +.+++-+++ ....+
T Consensus 157 ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~e 236 (338)
T cd04733 157 LAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTEE 236 (338)
T ss_pred HHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCHH
Confidence 3467899999999653 111 0145788888875 4 568888874 23444
Q ss_pred HHHHhh---c--cCCEEEEEeecCCCCCCcc----------chh--HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHH
Q 023494 180 AIECVL---D--VVDLVLIMSVNPGFGGQSF----------IES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241 (281)
Q Consensus 180 ~~~~~l---~--~vD~IlvmsV~pG~~GQ~f----------~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~ 241 (281)
+..+++ + .+|+|-+. .|...+.. .+. .++-.+++|+.. +++|.++|+|+ ++.+.
T Consensus 237 ea~~ia~~Le~~Gvd~iev~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~t~~~a~ 308 (338)
T cd04733 237 DALEVVEALEEAGVDLVELS---GGTYESPAMAGAKKESTIAREAYFLEFAEKIRKVT-----KTPLMVTGGFRTRAAME 308 (338)
T ss_pred HHHHHHHHHHHcCCCEEEec---CCCCCCccccccccCCccccchhhHHHHHHHHHHc-----CCCEEEeCCCCCHHHHH
Confidence 333332 2 26777553 33222211 011 133344555543 47899999995 88999
Q ss_pred HHHHcC-CcEEEEcccccCCCCHHHH
Q 023494 242 KVIEAG-ANALVAGSAVFGAKDYAEA 266 (281)
Q Consensus 242 ~~~~aG-AD~~VvGSaIf~a~dp~~~ 266 (281)
++++.| +|++-+|+.+...++.-..
T Consensus 309 ~~l~~g~aD~V~lgR~~iadP~~~~k 334 (338)
T cd04733 309 QALASGAVDGIGLARPLALEPDLPNK 334 (338)
T ss_pred HHHHcCCCCeeeeChHhhhCccHHHH
Confidence 999887 8999999999976665433
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PLN02389 biotin synthase | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.07 Score=51.65 Aligned_cols=196 Identities=17% Similarity=0.170 Sum_probs=110.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeC--cccc--cccCCHHHHHHcCcCCCCCeeEEEEe--cChhhHHHHHHHcCCCE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDG--RFVP--NITIGPLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKAGADI 141 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG--~fvp--n~~~G~~~I~~ir~~t~~~idaHLmv--~dp~~~i~~~~~aGAd~ 141 (281)
++..+.+.++.+.+.|+..+++- ..| .+-+ .+.+=.++++.+|+ .+ +.++.-. .+ .+.++.+.++|.|.
T Consensus 117 s~EeIl~~a~~~~~~G~~~~~iv-ts~rg~~~e~~~~e~i~eiir~ik~-~~--l~i~~s~G~l~-~E~l~~LkeAGld~ 191 (379)
T PLN02389 117 SKDDVLEAAKRAKEAGSTRFCMG-AAWRDTVGRKTNFNQILEYVKEIRG-MG--MEVCCTLGMLE-KEQAAQLKEAGLTA 191 (379)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE-ecccCCCCChhHHHHHHHHHHHHhc-CC--cEEEECCCCCC-HHHHHHHHHcCCCE
Confidence 33344455556667799988762 111 1111 12233455666664 23 3333211 12 24577889999999
Q ss_pred EEEcccccc--------cc---cHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHh---h---c-cCCEEEEEee--cCC
Q 023494 142 VSVHCEQSS--------TI---HLHRTLNQIKDLGAKA--GVVLNPATSLSAIECV---L---D-VVDLVLIMSV--NPG 199 (281)
Q Consensus 142 Itvh~Ea~~--------~~---~i~~~l~~ik~~G~k~--Glai~p~t~ie~~~~~---l---~-~vD~IlvmsV--~pG 199 (281)
+..-.|+.+ .. +.-++++.+++.|+++ |+.+......++.... + + .+|.|-+... .||
T Consensus 192 ~~~~LeTs~~~y~~i~~~~s~e~rl~ti~~a~~~Gi~v~sg~IiGlgEt~edrv~~l~~Lr~L~~~~~~v~l~~l~P~~G 271 (379)
T PLN02389 192 YNHNLDTSREYYPNVITTRSYDDRLETLEAVREAGISVCSGGIIGLGEAEEDRVGLLHTLATLPEHPESVPINALVAVKG 271 (379)
T ss_pred EEeeecCChHHhCCcCCCCCHHHHHHHHHHHHHcCCeEeEEEEECCCCCHHHHHHHHHHHHhcccCCcEEecccceecCC
Confidence 888777320 11 2347888889999998 5566555444332221 1 1 3566655433 345
Q ss_pred CC--CC-ccch-hHHHHHHHHHHHhhhcCCCCeEEEecCC---ChhcHHHHHHcCCcEEEEccc-ccCC-CCHHHHHHHH
Q 023494 200 FG--GQ-SFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANALVAGSA-VFGA-KDYAEAIKGI 270 (281)
Q Consensus 200 ~~--GQ-~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI---~~e~i~~~~~aGAD~~VvGSa-If~a-~dp~~~~~~l 270 (281)
.. +. +..+ +.+..|.-.|-++++. .|-+.||= ..+.-.....+|||.+++|-+ ++.. .++.+-.+-+
T Consensus 272 TpL~~~~~~s~~e~lr~iAi~Rl~lP~~----~i~i~~gr~~l~~~~~~~~l~~GAN~~~~g~~~Ltt~g~~~~~d~~~~ 347 (379)
T PLN02389 272 TPLEDQKPVEIWEMVRMIATARIVMPKA----MVRLSAGRVRFSMAEQALCFLAGANSIFTGDKLLTTPNNDFDADQAMF 347 (379)
T ss_pred CcCCCCCCCCHHHHHHHHHHHHHHCCCc----cccccccccccChhHHHHHHHhCCCEEEECCcccCCCCCChHHHHHHH
Confidence 42 22 1223 4466666666666543 23345663 345567889999999999998 8754 4566666555
Q ss_pred HH
Q 023494 271 KT 272 (281)
Q Consensus 271 ~~ 272 (281)
++
T Consensus 348 ~~ 349 (379)
T PLN02389 348 KE 349 (379)
T ss_pred HH
Confidence 55
|
|
| >PRK14024 phosphoribosyl isomerase A; Provisional | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0021 Score=58.08 Aligned_cols=77 Identities=13% Similarity=0.228 Sum_probs=54.2
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++..+.|.+. +|.+.+.-.+ +..|.. ..++-|+++.+.. ..+++++|||+ .|.++.+..+||+-+++
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd-~~~g~~---~n~~~i~~i~~~~-----~~pv~vgGGirs~edv~~~l~~Ga~kvvi 103 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLD-AAFGRG---SNRELLAEVVGKL-----DVKVELSGGIRDDESLEAALATGCARVNI 103 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEecc-ccCCCC---ccHHHHHHHHHHc-----CCCEEEcCCCCCHHHHHHHHHCCCCEEEE
Confidence 567766666553 6777766555 322322 2234455555543 36899999999 89999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
||+.++.+
T Consensus 104 Gs~~l~~p 111 (241)
T PRK14024 104 GTAALENP 111 (241)
T ss_pred CchHhCCH
Confidence 99999754
|
|
| >cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4 | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0085 Score=57.19 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=78.7
Q ss_pred HHHcCCCEEEEcccc--------cc-----cc-----------cHHHHHHHHHHc-C------CcEEEEECCCC------
Q 023494 134 FIKAGADIVSVHCEQ--------SS-----TI-----------HLHRTLNQIKDL-G------AKAGVVLNPAT------ 176 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea--------~~-----~~-----------~i~~~l~~ik~~-G------~k~Glai~p~t------ 176 (281)
+.++|.|+|-+|.-. .+ ++ -+.++++.+|+. | ..+|+=+++..
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~~~~~g~ 232 (353)
T cd04735 153 AIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEEPEEPGI 232 (353)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECcccccCCCC
Confidence 467899999999631 01 00 155788888874 4 45777777643
Q ss_pred CHHHHHHh---hc--cCCEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCC
Q 023494 177 SLSAIECV---LD--VVDLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGA 248 (281)
Q Consensus 177 ~ie~~~~~---l~--~vD~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGA 248 (281)
..++..++ ++ .+|+|-+.... +.... ..+...+.++.+++... .++++.+-||| +++.+.++++.|+
T Consensus 233 ~~ee~~~i~~~L~~~GvD~I~Vs~g~--~~~~~~~~~~~~~~~~~~ik~~~~---~~iPVi~~Ggi~t~e~ae~~l~~ga 307 (353)
T cd04735 233 RMEDTLALVDKLADKGLDYLHISLWD--FDRKSRRGRDDNQTIMELVKERIA---GRLPLIAVGSINTPDDALEALETGA 307 (353)
T ss_pred CHHHHHHHHHHHHHcCCCEEEeccCc--cccccccCCcchHHHHHHHHHHhC---CCCCEEEECCCCCHHHHHHHHHcCC
Confidence 23333333 32 27888763211 11111 11112333444555432 24678899999 5999999999999
Q ss_pred cEEEEcccccCCCCHHHHH
Q 023494 249 NALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 249 D~~VvGSaIf~a~dp~~~~ 267 (281)
|.+.+|+++...+|....+
T Consensus 308 D~V~~gR~liadPdl~~k~ 326 (353)
T cd04735 308 DLVAIGRGLLVDPDWVEKI 326 (353)
T ss_pred ChHHHhHHHHhCccHHHHH
Confidence 9999999998777754333
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.026 Score=51.72 Aligned_cols=176 Identities=15% Similarity=0.136 Sum_probs=108.7
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
...+.+-..|.||+-+|..-|.|-. .-=...++.++. .+....|-+=..||. ++..+.++||++|.++.-. +.++
T Consensus 31 ~~~e~~a~~G~D~v~iD~EHg~~~~--~~~~~~i~a~~~-~g~~~lVRvp~~~~~-~i~r~LD~Ga~giivP~v~-tae~ 105 (256)
T PRK10558 31 ITTEVLGLAGFDWLVLDGEHAPNDV--STFIPQLMALKG-SASAPVVRVPTNEPV-IIKRLLDIGFYNFLIPFVE-TAEE 105 (256)
T ss_pred HHHHHHHhcCCCEEEEccccCCCCH--HHHHHHHHHHhh-cCCCcEEECCCCCHH-HHHHHhCCCCCeeeecCcC-CHHH
Confidence 4566777889999999988885421 111223333333 344555544444543 6788999999999888543 2455
Q ss_pred HHHHHHHHH--------------------------HcC--CcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----cCC
Q 023494 154 LHRTLNQIK--------------------------DLG--AKAGVVLNPATSLSAIECVLD--VVDLVLIMSV----NPG 199 (281)
Q Consensus 154 i~~~l~~ik--------------------------~~G--~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV----~pG 199 (281)
.+++++.+| ..+ ..+.+.|.....++.+++++. .+|.+.+.+. .-|
T Consensus 106 a~~~v~a~kypP~G~Rg~~~~~~~~~y~~~~~y~~~an~~~~vi~~IEt~~av~ni~eI~av~gvd~l~iG~~DLs~slG 185 (256)
T PRK10558 106 ARRAVASTRYPPEGIRGVSVSHRANMFGTVPDYFAQSNKNITVLVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAALG 185 (256)
T ss_pred HHHHHHHcCCCCCCcCCCCccccccccCChHHHHHHhccccEEEEEECCHHHHHHHHHHhCCCCCcEEEECHHHHHHHcC
Confidence 555544322 222 234444543344567777764 4888887543 234
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
..++...|+....++++......+|. ...+ ..-+++.++.+++.|++.+++|+.+
T Consensus 186 ~~~~~~~~~v~~a~~~v~~aa~~~G~--~~g~-~~~~~~~~~~~~~~G~~~v~~~~D~ 240 (256)
T PRK10558 186 HLGNASHPDVQKAIQHIFARAKAHGK--PSGI-LAPVEADARRYLEWGATFVAVGSDL 240 (256)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHcCC--ceEE-cCCCHHHHHHHHHcCCCEEEEchHH
Confidence 44555567777777777777666553 3322 3456788999999999999999653
|
|
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.032 Score=50.39 Aligned_cols=139 Identities=16% Similarity=0.238 Sum_probs=90.4
Q ss_pred HHHHHHcCcCCCCCeeEEEEecChhhHHHHH--HHcCCCEEEEccccc---------------ccccHHHHHHHHHHcCC
Q 023494 104 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQS---------------STIHLHRTLNQIKDLGA 166 (281)
Q Consensus 104 ~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~--~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~G~ 166 (281)
.+.++.+++ .+.|+.+.++-.||+.+.+.+ .+.++|.|-+-..+. ..+.+.++++.+|+.++
T Consensus 62 ~~~~~~~~~-~~~p~~vqi~g~~~~~~~~aa~~~~~~~~~ielN~gCP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~~~~ 140 (233)
T cd02911 62 EGEIKALKD-SNVLVGVNVRSSSLEPLLNAAALVAKNAAILEINAHCRQPEMVEAGAGEALLKDPERLSEFIKALKETGV 140 (233)
T ss_pred HHHHHHhhc-cCCeEEEEecCCCHHHHHHHHHHHhhcCCEEEEECCCCcHHHhcCCcchHHcCCHHHHHHHHHHHHhcCC
Confidence 344555544 357899999999998765433 233567777644321 01234788899998888
Q ss_pred cEEEEECCCC--CHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHH
Q 023494 167 KAGVVLNPAT--SLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241 (281)
Q Consensus 167 k~Glai~p~t--~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~ 241 (281)
.+.+=+.++. +...+.+.+. .+|.|-+.+ +..|. +..++.|++++ .+++|..-|||+ .+.+.
T Consensus 141 pVsvKir~g~~~~~~~la~~l~~aG~d~ihv~~---~~~g~---~ad~~~I~~i~-------~~ipVIgnGgI~s~eda~ 207 (233)
T cd02911 141 PVSVKIRAGVDVDDEELARLIEKAGADIIHVDA---MDPGN---HADLKKIRDIS-------TELFIIGNNSVTTIESAK 207 (233)
T ss_pred CEEEEEcCCcCcCHHHHHHHHHHhCCCEEEECc---CCCCC---CCcHHHHHHhc-------CCCEEEEECCcCCHHHHH
Confidence 8888777665 2333333333 278764432 22221 12245555554 247888899997 99999
Q ss_pred HHHHcCCcEEEEccc
Q 023494 242 KVIEAGANALVAGSA 256 (281)
Q Consensus 242 ~~~~aGAD~~VvGSa 256 (281)
++++.|||.+-+|++
T Consensus 208 ~~l~~GaD~VmiGR~ 222 (233)
T cd02911 208 EMFSYGADMVSVARA 222 (233)
T ss_pred HHHHcCCCEEEEcCC
Confidence 999999999999999
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >cd04737 LOX_like_FMN L-Lactate oxidase (LOX) FMN-binding domain | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.012 Score=56.31 Aligned_cols=48 Identities=21% Similarity=0.346 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.++-|.++++... .+++|.+||||. ..++-+.+..|||.+-+|+.++.
T Consensus 262 ~~~~l~~i~~a~~---~~i~vi~dGGIr~g~Di~kaLalGA~~V~iGr~~l~ 310 (351)
T cd04737 262 SFDSLPEIAEAVN---HRVPIIFDSGVRRGEHVFKALASGADAVAVGRPVLY 310 (351)
T ss_pred HHHHHHHHHHHhC---CCCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 3445555555442 247899999999 66888888999999999998653
|
LOX is a member of the family of FMN-containing alpha-hydroxyacid oxidases and catalyzes the oxidation of l-lactate using molecular oxygen to generate pyruvate and H2O2. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.023 Score=51.54 Aligned_cols=193 Identities=21% Similarity=0.285 Sum_probs=115.4
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.-+.-+....++.+|+|-|-+= --|.- -.-.+-+..||+....++.. -.+-..++++.+.+..+|.+|+-.|
T Consensus 21 ~Pdpv~aA~~a~~aGAdgITvH-----lReDrRHI~d~Dv~~L~~~~~~~lNl--E~a~t~e~~~ia~~~kP~~vtLVPE 93 (239)
T PF03740_consen 21 YPDPVEAARIAEEAGADGITVH-----LREDRRHIQDRDVRRLRELVKTPLNL--EMAPTEEMVDIALKVKPDQVTLVPE 93 (239)
T ss_dssp -S-HHHHHHHHHHTT-SEEEEE-----B-TT-SSS-HHHHHHHHHH-SSEEEE--EEESSHHHHHHHHHH--SEEEEE--
T ss_pred CCCHHHHHHHHHHcCCCEEEec-----cCCCcCcCCHHHHHHHHHHcccCEEe--ccCCCHHHHHHHHhCCcCEEEECCC
Confidence 3455677778889999986442 11221 23456677888776566554 3333355888889999999999977
Q ss_pred cc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc-----h-
Q 023494 148 QS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI-----E- 207 (281)
Q Consensus 148 a~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~-----~- 207 (281)
.- ..+.+..+++.+|+.|+++.+.+.|+ .+.++.-.+ .+|+|-+.| |.....|. .
T Consensus 94 ~r~e~TTegGldv~~~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhT---G~yA~a~~~~~~~~~ 168 (239)
T PF03740_consen 94 KREELTTEGGLDVAGNRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHT---GPYANAFDDAEEAEE 168 (239)
T ss_dssp SGGGBSTTSSB-TCGGHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEET---HHHHHHSSHHHHHHH
T ss_pred CCCCcCCCcCChhhcCHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEeh---hHhhhhcCCHHHHHH
Confidence 42 01248899999999999999999985 444443333 489998754 32222231 1
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCC---CCHHHHHHHHHHhcC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGA---KDYAEAIKGIKTSKR 275 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a---~dp~~~~~~l~~~~~ 275 (281)
+.++++....+...+. ++.+....|+|.+|+..+.+. +..-+-+|.+|+.. --.+++++++++.++
T Consensus 169 ell~~l~~aa~~a~~l--GL~VnAGHgL~y~N~~~i~~i~~i~EvnIGHaiia~Al~~Gl~~aV~~m~~~~~ 238 (239)
T PF03740_consen 169 ELLERLRDAARYAHEL--GLGVNAGHGLNYDNVRPIAAIPPIEEVNIGHAIIARALFVGLEEAVREMKELMK 238 (239)
T ss_dssp HHHHHHHHHHHHHHHT--T-EEEEETT--TTTHHHHHTSTTEEEEEE-HHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHc--CCEEecCCCCCHHHHHHHHhCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 1256677666665554 567889999999999988665 34567889887742 245677888877654
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0022 Score=57.04 Aligned_cols=79 Identities=13% Similarity=0.273 Sum_probs=56.1
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
.+|++..+.|.+ .+|.+.+...+.-+.|+. ..++.++++++.. +.++.++|||+ .+.+..+.++|||.++
T Consensus 30 ~~~~~~a~~~~~~g~~~i~v~dld~~~~g~~---~~~~~i~~i~~~~-----~~pv~~~GGI~~~ed~~~~~~~Ga~~vi 101 (233)
T PRK00748 30 DDPVAQAKAWEDQGAKWLHLVDLDGAKAGKP---VNLELIEAIVKAV-----DIPVQVGGGIRSLETVEALLDAGVSRVI 101 (233)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCc---ccHHHHHHHHHHC-----CCCEEEcCCcCCHHHHHHHHHcCCCEEE
Confidence 356666666644 378888877743234433 2345555555543 36899999999 7899999999999999
Q ss_pred EcccccCCC
Q 023494 253 AGSAVFGAK 261 (281)
Q Consensus 253 vGSaIf~a~ 261 (281)
+|++++...
T Consensus 102 lg~~~l~~~ 110 (233)
T PRK00748 102 IGTAAVKNP 110 (233)
T ss_pred ECchHHhCH
Confidence 999999643
|
|
| >cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.027 Score=52.20 Aligned_cols=160 Identities=16% Similarity=0.165 Sum_probs=98.2
Q ss_pred HHHHHH-HHcCCCeEEEEeeeCcccccccCCH---HHHHHcCcCC-------CCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 74 EQVKAV-ELAGCDWIHVDVMDGRFVPNITIGP---LVVDALRPVT-------DLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 74 ~~l~~l-~~~G~d~iHiDImDG~fvpn~~~G~---~~I~~ir~~t-------~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
+.++.| .+.|++.|++ |+| ..++ +.++++.+.. +..+.+ ++.+ .+-++.+.++|++.|
T Consensus 23 ~i~~~L~~~~Gv~~IEv----g~~----~~s~~e~~av~~~~~~~~~~~~~~~~~~~a--~~~~-~~~~~~A~~~g~~~i 91 (280)
T cd07945 23 NIAKILLQELKVDRIEV----ASA----RVSEGEFEAVQKIIDWAAEEGLLDRIEVLG--FVDG-DKSVDWIKSAGAKVL 91 (280)
T ss_pred HHHHHHHHHhCCCEEEe----cCC----CCCHHHHHHHHHHHHHhhhhccccCcEEEE--ecCc-HHHHHHHHHCCCCEE
Confidence 344554 4559998888 654 2355 6666664321 122222 2333 456888999999988
Q ss_pred EEccccc--------------ccccHHHHHHHHHHcCCcEEEEECC-----CCCHHHHHHhhcc-----CCEEEEEeecC
Q 023494 143 SVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLNP-----ATSLSAIECVLDV-----VDLVLIMSVNP 198 (281)
Q Consensus 143 tvh~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~p-----~t~ie~~~~~l~~-----vD~IlvmsV~p 198 (281)
.+-.-.+ ..+.+.+.++.+++.|+++.+.+.. .++.+.+.++.+. +|.|.+ +
T Consensus 92 ~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d~~~~~r~~~~~~~~~~~~~~~~G~~~i~l----~ 167 (280)
T cd07945 92 NLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLEDWSNGMRDSPDYVFQLVDFLSDLPIKRIML----P 167 (280)
T ss_pred EEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEeCCCCCcCCHHHHHHHHHHHHHcCCCEEEe----c
Confidence 8764221 1122455688899999988776542 3466666665542 666654 2
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
-..|.....++.+.++.+++..+ +.+|++ |-|....|.-..+++||+.+=
T Consensus 168 DT~G~~~P~~v~~l~~~l~~~~~----~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd 221 (280)
T cd07945 168 DTLGILSPFETYTYISDMVKRYP----NLHFDFHAHNDYDLAVANVLAAVKAGIKGLH 221 (280)
T ss_pred CCCCCCCHHHHHHHHHHHHhhCC----CCeEEEEeCCCCCHHHHHHHHHHHhCCCEEE
Confidence 33344344455666777765443 345665 778888899999999999763
|
Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con |
| >PRK09250 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.073 Score=50.80 Aligned_cols=179 Identities=17% Similarity=0.184 Sum_probs=106.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHH-cCcC-CCCCeeEEEEec------Ch-h----hHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDA-LRPV-TDLPLDVHLMIV------EP-E----QRVPDF 134 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~-ir~~-t~~~idaHLmv~------dp-~----~~i~~~ 134 (281)
+..+.+..++.+.++|+|-+-. ..-+++. .+.. .+.++.+||=-. +| . .-++.+
T Consensus 89 gl~dp~~~i~~a~~~g~dAv~~-------------~~G~l~~~~~~~~~~iplIlkln~~t~l~~~~~~~~~l~~sVedA 155 (348)
T PRK09250 89 LYFDPENIVKLAIEAGCNAVAS-------------TLGVLEAVARKYAHKIPFILKLNHNELLSYPNTYDQALTASVEDA 155 (348)
T ss_pred cccCHHHHHHHHHhcCCCEEEe-------------CHHHHHhccccccCCCCEEEEeCCCCCCCCCCCCcccceecHHHH
Confidence 4458888899999988987532 1224444 2333 346777776432 11 1 137889
Q ss_pred HHcCCCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECCCCC-----------HHHHHHhhc-----cCCEEE
Q 023494 135 IKAGADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPATS-----------LSAIECVLD-----VVDLVL 192 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p~t~-----------ie~~~~~l~-----~vD~Il 192 (281)
...|||.|.+|.--.+ ..++.++.++++++|+-+.+...|.-+ .+.+..... .+|+|=
T Consensus 156 lrLGAdAV~~tvy~Gs~~E~~ml~~l~~i~~ea~~~GlPlv~~~YpRG~~i~~~~d~~~~~d~Ia~AaRiaaELGADIVK 235 (348)
T PRK09250 156 LRLGAVAVGATIYFGSEESRRQIEEISEAFEEAHELGLATVLWSYLRNSAFKKDGDYHTAADLTGQANHLAATIGADIIK 235 (348)
T ss_pred HHCCCCEEEEEEecCCHHHHHHHHHHHHHHHHHHHhCCCEEEEecccCcccCCcccccccHHHHHHHHHHHHHHcCCEEE
Confidence 9999999999954321 235677888999999988775544322 222222211 267774
Q ss_pred EEeecCCCCCCccc-----------------hhHHHHHHHHHHHhhhcCCCCeEEEecCCChh------cHHHH---HHc
Q 023494 193 IMSVNPGFGGQSFI-----------------ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------NAYKV---IEA 246 (281)
Q Consensus 193 vmsV~pG~~GQ~f~-----------------~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e------~i~~~---~~a 246 (281)
+ -.||-.+ .|. ....++++.+.+-+- .| ..++.+.||=+.+ .+..+ +++
T Consensus 236 v--~yp~~~~-~f~~v~~~~~~~~~~~~~~~~~~~~~~~~~V~ac~-ag-~vpVviAGG~k~~~~e~L~~v~~a~~~i~a 310 (348)
T PRK09250 236 Q--KLPTNNG-GYKAINFGKTDDRVYSKLTSDHPIDLVRYQVANCY-MG-RRGLINSGGASKGEDDLLDAVRTAVINKRA 310 (348)
T ss_pred e--cCCCChh-hHHHhhcccccccccccccccchHHHHHHHHHhhc-cC-CceEEEeCCCCCCHHHHHHHHHHHHHhhhc
Confidence 3 2343211 111 112233333332210 00 3578899998732 45567 788
Q ss_pred CCcEEEEcccccCCCCHH
Q 023494 247 GANALVAGSAVFGAKDYA 264 (281)
Q Consensus 247 GAD~~VvGSaIf~a~dp~ 264 (281)
|+..+++|+.||+.++++
T Consensus 311 Ga~Gv~iGRNIfQ~~~~e 328 (348)
T PRK09250 311 GGMGLIIGRKAFQRPMAE 328 (348)
T ss_pred CCcchhhchhhhcCCcHH
Confidence 999999999999998876
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.12 Score=46.85 Aligned_cols=196 Identities=16% Similarity=0.188 Sum_probs=116.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC--CCeeEEE--EecChhhHH---HHHHHcCCCE
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVHL--MIVEPEQRV---PDFIKAGADI 141 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~--~~idaHL--mv~dp~~~i---~~~~~aGAd~ 141 (281)
+.+++|+...+ ++|+|+ ||++|-.-=..=..-+.+|++|+...+ .|+-+-+ .-.+|+... ......|+|+
T Consensus 7 v~~~~EA~~a~-~~gaDi--ID~K~P~~GaLGA~~~~vi~~i~~~~~~~~pvSAtiGDlp~~p~~~~~aa~~~a~~Gvdy 83 (235)
T PF04476_consen 7 VRNVEEAEEAL-AGGADI--IDLKNPAEGALGALFPWVIREIVAAVPGRKPVSATIGDLPMKPGTASLAALGAAATGVDY 83 (235)
T ss_pred CCCHHHHHHHH-hCCCCE--EEccCCCCCCCCCCCHHHHHHHHHHcCCCCceEEEecCCCCCchHHHHHHHHHHhcCCCE
Confidence 35777766555 578998 498882111222446888998887633 5666633 113454322 2235579999
Q ss_pred EEEcccccccccHH-------HHHHHHHHc--CCcEEEEECCCC-------CHHHHHHhhc--cCCEEEEEeecCCCCCC
Q 023494 142 VSVHCEQSSTIHLH-------RTLNQIKDL--GAKAGVVLNPAT-------SLSAIECVLD--VVDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 142 Itvh~Ea~~~~~i~-------~~l~~ik~~--G~k~Glai~p~t-------~ie~~~~~l~--~vD~IlvmsV~pG~~GQ 203 (281)
|-+.... ..+.. .+.+.+++. +.++..++-.+. |.+ +.+++. ..|.+++=|- ..+|.
T Consensus 84 vKvGl~g--~~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~-l~~~a~~aG~~gvMlDTa--~Kdg~ 158 (235)
T PF04476_consen 84 VKVGLFG--CKDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLD-LPEIAAEAGFDGVMLDTA--DKDGG 158 (235)
T ss_pred EEEecCC--CCCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHH-HHHHHHHcCCCEEEEecc--cCCCC
Confidence 9999753 22333 333444443 334433332222 333 333433 3677765433 33343
Q ss_pred c-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCH------HHHHHHHHHhc
Q 023494 204 S-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY------AEAIKGIKTSK 274 (281)
Q Consensus 204 ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp------~~~~~~l~~~~ 274 (281)
. |.-...+.+++..+...++ +......|.++.++++.+...++|++=+=+++....|- .+.++++++.+
T Consensus 159 ~L~d~~~~~~L~~Fv~~ar~~--gL~~aLAGSL~~~di~~L~~l~pD~lGfRGAvC~ggdR~~G~id~~~V~~lr~~~ 234 (235)
T PF04476_consen 159 SLFDHLSEEELAEFVAQARAH--GLMCALAGSLRFEDIPRLKRLGPDILGFRGAVCGGGDRRAGRIDPELVAALRALM 234 (235)
T ss_pred chhhcCCHHHHHHHHHHHHHc--cchhhccccCChhHHHHHHhcCCCEEEechhhCCCCCcCccccCHHHHHHHHHhc
Confidence 3 4444466677777666554 46788899999999999999999998777888865221 24666666654
|
|
| >PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.021 Score=52.63 Aligned_cols=176 Identities=17% Similarity=0.159 Sum_probs=109.7
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
...+.+-..|.||+-+|..-|.|. ..-=...++.++. .+....|.+--.+| .++..+.++||++|.++.-. +.++
T Consensus 30 ~~~E~~a~~GfD~v~iD~EHg~~~--~~~l~~~i~a~~~-~g~~~lVRvp~~~~-~~i~r~LD~GA~GIivP~V~-saee 104 (267)
T PRK10128 30 YMAEIAATSGYDWLLIDGEHAPNT--IQDLYHQLQAIAP-YASQPVIRPVEGSK-PLIKQVLDIGAQTLLIPMVD-TAEQ 104 (267)
T ss_pred HHHHHHHHcCCCEEEEccccCCCC--HHHHHHHHHHHHh-cCCCeEEECCCCCH-HHHHHHhCCCCCeeEecCcC-CHHH
Confidence 445666778999999998888442 1111233444443 34444444433444 36788999999999988543 3455
Q ss_pred HHHHHHHHHHc--C---------------------------CcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----cC
Q 023494 154 LHRTLNQIKDL--G---------------------------AKAGVVLNPATSLSAIECVLD--VVDLVLIMSV----NP 198 (281)
Q Consensus 154 i~~~l~~ik~~--G---------------------------~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV----~p 198 (281)
.+++++.+|=. | ..+.+-|.....++.++++.. .+|.+.+.+. .-
T Consensus 105 A~~~V~a~rYpP~G~Rg~g~~~~r~~~yg~~~~y~~~an~~~~vi~qiEt~~a~~n~~~I~~~~gvd~i~~G~~Dls~sl 184 (267)
T PRK10128 105 ARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQANDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADLSASL 184 (267)
T ss_pred HHHHHHhcCCCCCCCCCCCCccchhhccCChHHHHHHhccccEEEEEECCHHHHHhHHHHhCCCCCCEEEECHHHHHHHc
Confidence 66666655300 1 112223333334456666544 4788877432 34
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
|..+|.-.|+..+.++++.+...++|. ...+ ..-+++.++..++.|++.+++|+..
T Consensus 185 g~~~~~~~pev~~ai~~v~~a~~~~Gk--~~G~-~~~~~~~a~~~~~~G~~~v~~g~D~ 240 (267)
T PRK10128 185 GYPDNAGHPEVQRIIETSIRRIRAAGK--AAGF-LAVDPDMAQKCLAWGANFVAVGVDT 240 (267)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHcCC--eEEE-cCCCHHHHHHHHHcCCcEEEEChHH
Confidence 666777778888888888888877653 3321 2346788999999999999999653
|
|
| >TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2 | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.018 Score=54.67 Aligned_cols=144 Identities=17% Similarity=0.194 Sum_probs=87.7
Q ss_pred HHcCc-CCCCCeeEEEEecC-----hhhHHHHHHHcCCCEEEEccccc-------ccccHH---HHHHHHHHc-CCcEEE
Q 023494 108 DALRP-VTDLPLDVHLMIVE-----PEQRVPDFIKAGADIVSVHCEQS-------STIHLH---RTLNQIKDL-GAKAGV 170 (281)
Q Consensus 108 ~~ir~-~t~~~idaHLmv~d-----p~~~i~~~~~aGAd~Itvh~Ea~-------~~~~i~---~~l~~ik~~-G~k~Gl 170 (281)
+.+|+ .++.|+.+-+-+.. +..+.+.....+||.+-+|.... ...+.. +.++.+++. ++.+++
T Consensus 105 ~~vr~~~~~~p~i~nl~~~~~~~~~~~~~~~~i~~i~adal~i~ln~~q~~~~p~g~~~f~~~le~i~~i~~~~~vPViv 184 (333)
T TIGR02151 105 EVVREEAPNGPLIANIGAPQLVEGGPEEAQEAIDMIEADALAIHLNVLQELVQPEGDRNFKGWLEKIAEICSQLSVPVIV 184 (333)
T ss_pred HHHHHhCCCCcEEeecCchhhccccHHHHHHHHHHhcCCCEEEcCcccccccCCCCCcCHHHHHHHHHHHHHhcCCCEEE
Confidence 45555 47888888665432 22233333345788888885311 011343 667777776 777776
Q ss_pred EECC-CCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc--------------------chhHHHHHHHHHHHhhhcCCCCe
Q 023494 171 VLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF--------------------IESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 171 ai~p-~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f--------------------~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
=... .+..+..+.+.+ .+|.|.+-+ .+|..| ...+.+.|.++++ ...+++
T Consensus 185 K~~g~g~~~~~a~~L~~aGvd~I~Vsg----~gGt~~~~ie~~r~~~~~~~~~~~~~g~~t~~~l~~~~~----~~~~ip 256 (333)
T TIGR02151 185 KEVGFGISKEVAKLLADAGVSAIDVAG----AGGTSWAQVENYRAKGSNLASFFNDWGIPTAASLLEVRS----DAPDAP 256 (333)
T ss_pred EecCCCCCHHHHHHHHHcCCCEEEECC----CCCCcccchhhhcccccccchhhhcccHhHHHHHHHHHh----cCCCCe
Confidence 4332 245666665544 489998743 222221 1112333444443 123578
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|.++|||. .+.+.+++..|||.+-+|++++.
T Consensus 257 VIasGGI~~~~di~kaLalGAd~V~igr~~L~ 288 (333)
T TIGR02151 257 IIASGGLRTGLDVAKAIALGADAVGMARPFLK 288 (333)
T ss_pred EEEECCCCCHHHHHHHHHhCCCeehhhHHHHH
Confidence 99999995 88999999999999999999874
|
Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids. |
| >TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0035 Score=57.37 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=51.0
Q ss_pred CC-HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEE
Q 023494 176 TS-LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~-ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.| ++..+.|.+. ++++-+. +- |.+ +.+ -|+++.+. .+.++++.|||+.++++.++++|||-+++
T Consensus 38 ~pp~~~A~~~~~~Ga~~lHvV--DL---g~~-n~~---~i~~i~~~-----~~~~v~vGGGIr~e~v~~~l~aGa~rVvI 103 (253)
T TIGR02129 38 KPSSYYAKLYKDDGVKGCHVI--ML---GPN-NDD---AAKEALHA-----YPGGLQVGGGINDTNAQEWLDEGASHVIV 103 (253)
T ss_pred CCHHHHHHHHHHcCCCEEEEE--EC---CCC-cHH---HHHHHHHh-----CCCCEEEeCCcCHHHHHHHHHcCCCEEEE
Confidence 45 7888887664 6665443 22 333 333 34444433 24689999999999999999999999999
Q ss_pred cccccCC
Q 023494 254 GSAVFGA 260 (281)
Q Consensus 254 GSaIf~a 260 (281)
||++++.
T Consensus 104 GS~av~~ 110 (253)
T TIGR02129 104 TSWLFTK 110 (253)
T ss_pred CcHHHhC
Confidence 9999975
|
This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut. |
| >cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.018 Score=54.70 Aligned_cols=124 Identities=19% Similarity=0.324 Sum_probs=79.1
Q ss_pred HHHHcCCCEEEEccccc--------c----------------cccHHHHHHHHHHc-CC-cEEEEECCCC---------C
Q 023494 133 DFIKAGADIVSVHCEQS--------S----------------TIHLHRTLNQIKDL-GA-KAGVVLNPAT---------S 177 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~----------------~~~i~~~l~~ik~~-G~-k~Glai~p~t---------~ 177 (281)
.+.++|.|+|-+|.-.. + ..-+.++++.+|+. |. .+|+=+++.. .
T Consensus 160 ~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~~ 239 (338)
T cd02933 160 NAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSDP 239 (338)
T ss_pred HHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCCC
Confidence 34678999999996531 0 01255888999974 54 5777676541 2
Q ss_pred HHHHHH---hhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEE
Q 023494 178 LSAIEC---VLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 178 ie~~~~---~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~ 251 (281)
.++..+ .++ .+|+|-+-. ..+..+. ....++-.+++|+.. ++++.+-|||+++.+.++++.| +|.+
T Consensus 240 ~ee~~~~~~~l~~~g~d~i~vs~--g~~~~~~-~~~~~~~~~~ik~~~-----~ipvi~~G~i~~~~a~~~l~~g~~D~V 311 (338)
T cd02933 240 EATFSYLAKELNKRGLAYLHLVE--PRVAGNP-EDQPPDFLDFLRKAF-----KGPLIAAGGYDAESAEAALADGKADLV 311 (338)
T ss_pred HHHHHHHHHHHHHcCCcEEEEec--CCCCCcc-cccchHHHHHHHHHc-----CCCEEEECCCCHHHHHHHHHcCCCCEE
Confidence 333223 332 278886621 1122222 222344455555543 3688899999999999999987 9999
Q ss_pred EEcccccCCCCHH
Q 023494 252 VAGSAVFGAKDYA 264 (281)
Q Consensus 252 VvGSaIf~a~dp~ 264 (281)
-+|+++...++.-
T Consensus 312 ~~gR~~ladP~~~ 324 (338)
T cd02933 312 AFGRPFIANPDLV 324 (338)
T ss_pred EeCHhhhhCcCHH
Confidence 9999999777654
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes. |
| >PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.0026 Score=57.44 Aligned_cols=78 Identities=19% Similarity=0.334 Sum_probs=54.8
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|++..+.|.+. +|.+.+.-.+.-. |+.-+. +-|+++.+.. ..+++|+|||+ .++++.+.+.|||-+|
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~-~~~~n~---~~i~~i~~~~-----~~~v~vGGGIrs~e~~~~~l~~Ga~kvv 100 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAE-GVGNNE---MYIKEISKIG-----FDWIQVGGGIRDIEKAKRLLSLDVNALV 100 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcC-CCcchH---HHHHHHHhhC-----CCCEEEeCCcCCHHHHHHHHHCCCCEEE
Confidence 3688877777653 7888877666332 433332 3444444321 12799999999 6999999999999999
Q ss_pred EcccccCCC
Q 023494 253 AGSAVFGAK 261 (281)
Q Consensus 253 vGSaIf~a~ 261 (281)
+||..++.+
T Consensus 101 igt~a~~~p 109 (232)
T PRK13586 101 FSTIVFTNF 109 (232)
T ss_pred ECchhhCCH
Confidence 999988643
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.047 Score=52.70 Aligned_cols=163 Identities=20% Similarity=0.219 Sum_probs=103.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcCCCCCeeEEEEecC-h-hhHHHHHHHcCCCEEEEccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPVTDLPLDVHLMIVE-P-EQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~t~~~idaHLmv~d-p-~~~i~~~~~aGAd~Itvh~E 147 (281)
.-.+.++.|.+.|++.|++ | .|..+-.. +.++.+++. +.. +-+++-. . .+.++.+.++|++.|.+-.-
T Consensus 27 ~k~~ia~~L~~~GV~~IE~----G--~p~~~~~~~e~i~~i~~~-~~~--~~i~~~~r~~~~di~~a~~~g~~~i~i~~~ 97 (378)
T PRK11858 27 EKLAIARMLDEIGVDQIEA----G--FPAVSEDEKEAIKAIAKL-GLN--ASILALNRAVKSDIDASIDCGVDAVHIFIA 97 (378)
T ss_pred HHHHHHHHHHHhCCCEEEE----e--CCCcChHHHHHHHHHHhc-CCC--eEEEEEcccCHHHHHHHHhCCcCEEEEEEc
Confidence 3345567788899998887 3 36554433 667777653 222 2233322 2 34588889999999888654
Q ss_pred ccc--------------cccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccc
Q 023494 148 QSS--------------TIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 148 a~~--------------~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~ 206 (281)
..+ .+.+.+.++.+++.|..+.+... ..++.+.+.+++.. +|.|.+ +-..|....
T Consensus 98 ~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l----~DT~G~~~P 173 (378)
T PRK11858 98 TSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRF----CDTVGILDP 173 (378)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEE----eccCCCCCH
Confidence 321 13456688899999998877642 23566666666543 566654 233354444
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.++.+.++.+++.+ +.+|++ |=|....|.-..+++||+.+
T Consensus 174 ~~v~~lv~~l~~~~-----~~~l~~H~Hnd~GlA~AN~laAv~aGa~~v 217 (378)
T PRK11858 174 FTMYELVKELVEAV-----DIPIEVHCHNDFGMATANALAGIEAGAKQV 217 (378)
T ss_pred HHHHHHHHHHHHhc-----CCeEEEEecCCcCHHHHHHHHHHHcCCCEE
Confidence 45556666666553 356666 66777778888899999976
|
|
| >PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0024 Score=57.25 Aligned_cols=78 Identities=13% Similarity=0.349 Sum_probs=52.3
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.+.+. +|.+.+-..+....+.. ...+.|+++++.. +.++.|+|||+ .+++..+.++|||.+++
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~---~~~~~i~~i~~~~-----~~~l~v~GGi~~~~~~~~~~~~Ga~~v~i 104 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGER---KNAEAIEKIIEAV-----GVPVQLGGGIRSAEDAASLLDLGVDRVIL 104 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCc---ccHHHHHHHHHHc-----CCcEEEcCCcCCHHHHHHHHHcCCCEEEE
Confidence 466666666543 67776654442222322 2234455554432 46899999999 88999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|+..++..
T Consensus 105 Gs~~~~~~ 112 (241)
T PRK13585 105 GTAAVENP 112 (241)
T ss_pred ChHHhhCh
Confidence 99998643
|
|
| >PF00682 HMGL-like: HMGL-like of this family is not conserved in other members | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0074 Score=53.85 Aligned_cols=168 Identities=23% Similarity=0.239 Sum_probs=101.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcC-CCCCeeEEEEec--ChhhHHHHHHHcCCCEEEEcc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPV-TDLPLDVHLMIV--EPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~-t~~~idaHLmv~--dp~~~i~~~~~aGAd~Itvh~ 146 (281)
...+.++.|.++|+++|++- .|.... ..+.++.+++. ++..+.++.... +...-++.+.++|+|.+.+..
T Consensus 15 ~k~~i~~~L~~~Gv~~iEvg------~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~g~~~i~i~~ 88 (237)
T PF00682_consen 15 EKLEIAKALDEAGVDYIEVG------FPFASEDDFEQVRRLREALPNARLQALCRANEEDIERAVEAAKEAGIDIIRIFI 88 (237)
T ss_dssp HHHHHHHHHHHHTTSEEEEE------HCTSSHHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHHHHHTTSSEEEEEE
T ss_pred HHHHHHHHHHHhCCCEEEEc------ccccCHHHHHHhhhhhhhhcccccceeeeehHHHHHHHHHhhHhccCCEEEecC
Confidence 44566678889999999884 122211 22334444443 445555544431 111225556679999998886
Q ss_pred cccc--------------cccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhcc-----CCEEEEEeecCCCCCCcc
Q 023494 147 EQSS--------------TIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDV-----VDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 147 Ea~~--------------~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f 205 (281)
...+ .+.+.+.++.+|+.|.++.+.+... ++.+.+.++... +|.|.+- -..|...
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~----Dt~G~~~ 164 (237)
T PF00682_consen 89 SVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVAFGCEDASRTDPEELLELAEALAEAGADIIYLA----DTVGIMT 164 (237)
T ss_dssp ETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEEEEETTTGGSSHHHHHHHHHHHHHHT-SEEEEE----ETTS-S-
T ss_pred cccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceEeCccccccccHHHHHHHHHHHHHcCCeEEEee----CccCCcC
Confidence 5432 3357788999999999997766433 466666665443 6777653 1223333
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
...+.+.++.+++.+++ .+|.+ |-|.-..|.-..+++|||.+=
T Consensus 165 P~~v~~lv~~~~~~~~~----~~l~~H~Hnd~Gla~An~laA~~aGa~~id 211 (237)
T PF00682_consen 165 PEDVAELVRALREALPD----IPLGFHAHNDLGLAVANALAALEAGADRID 211 (237)
T ss_dssp HHHHHHHHHHHHHHSTT----SEEEEEEBBTTS-HHHHHHHHHHTT-SEEE
T ss_pred HHHHHHHHHHHHHhccC----CeEEEEecCCccchhHHHHHHHHcCCCEEE
Confidence 33445667777776653 45665 778888899999999999963
|
are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A .... |
| >PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0037 Score=57.43 Aligned_cols=74 Identities=20% Similarity=0.272 Sum_probs=52.0
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~Vv 253 (281)
..|++..+.|.+. ++++-+.-... |.+-+ .+-|+++++ . +.+|+|.|||+.+++..++++|||-+|+
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdg---g~~~n---~~~i~~i~~-~-----~~~vqvGGGIR~e~i~~~l~~Ga~rVii 110 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGA---DDASL---AAALEALRA-Y-----PGGLQVGGGVNSENAMSYLDAGASHVIV 110 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCC---CCccc---HHHHHHHHh-C-----CCCEEEeCCccHHHHHHHHHcCCCEEEE
Confidence 4577777776653 56554433332 32222 444555554 2 3689999999999999999999999999
Q ss_pred cccccCC
Q 023494 254 GSAVFGA 260 (281)
Q Consensus 254 GSaIf~a 260 (281)
||..++.
T Consensus 111 gT~Av~~ 117 (262)
T PLN02446 111 TSYVFRD 117 (262)
T ss_pred chHHHhC
Confidence 9999974
|
|
| >COG1891 Uncharacterized protein conserved in archaea [Function unknown] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.063 Score=46.69 Aligned_cols=182 Identities=20% Similarity=0.287 Sum_probs=107.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeee---CcccccccCCHHHHHHcCcCCCCCeeEEEEec----ChhhH-HHH--HHHc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMD---GRFVPNITIGPLVVDALRPVTDLPLDVHLMIV----EPEQR-VPD--FIKA 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImD---G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~----dp~~~-i~~--~~~a 137 (281)
-+.|.+++++..+ .|+|.+ |+.. |..--|| |.+|++||+.++....+---+- .|+.. ... ++-+
T Consensus 6 SPin~eEA~eAie-GGAdIi--DVKNP~EGSLGANF---PWvIr~i~Ev~p~d~~vSAT~GDvpYKPGT~slAalGaav~ 79 (235)
T COG1891 6 SPINREEAIEAIE-GGADII--DVKNPAEGSLGANF---PWVIREIREVVPEDQEVSATVGDVPYKPGTASLAALGAAVA 79 (235)
T ss_pred ccCCHHHHHHHhh-CCCceE--eccCcccCcccCCC---hHHHHHHHHhCccceeeeeeecCCCCCCchHHHHHHHhHhh
Confidence 3468888888776 689874 7664 4333343 5688888887554333333442 34432 111 3457
Q ss_pred CCCEEEEccccc-----ccccHHHHHHHHHHcCC-cEEEE--------ECCCCCHHHHHHhhc-cCCEEEEEeecCCC-C
Q 023494 138 GADIVSVHCEQS-----STIHLHRTLNQIKDLGA-KAGVV--------LNPATSLSAIECVLD-VVDLVLIMSVNPGF-G 201 (281)
Q Consensus 138 GAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~-k~Gla--------i~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-~ 201 (281)
|||++-+..-.. ..+-...+.++.|+.+- +..++ ++.-.|+..-+-..+ .+|.+++= .+. +
T Consensus 80 GaDYiKVGLYg~kn~~eA~e~m~~vvrAVkd~d~~k~VVAaGYaDa~Rvgsv~Pl~~P~vaa~ag~DvaMvD---TaiKD 156 (235)
T COG1891 80 GADYIKVGLYGTKNEEEALEVMKNVVRAVKDFDPSKKVVAAGYADAHRVGSVSPLLLPEVAAEAGADVAMVD---TAIKD 156 (235)
T ss_pred CCceEEEeecccccHHHHHHHHHHHHHHHhccCCCceEEeccccchhhccCcCccccHHHHHhcCCCEEEEe---ccccc
Confidence 999999984321 11224455666676654 22222 222223322111122 37888663 333 3
Q ss_pred CCc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 202 GQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 202 GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|.. |.-...+.+++..++..++| +..+..|.++.|+++.+.+.|+|++=+-++....
T Consensus 157 GkslFdfm~~e~l~eFvd~Ah~hG--L~~AlAGs~~~ehlp~l~eig~DivGvRgaaC~~ 214 (235)
T COG1891 157 GKSLFDFMDEEELEEFVDLAHEHG--LEVALAGSLKFEHLPILKEIGPDIVGVRGAACEG 214 (235)
T ss_pred chhHHhhhcHHHHHHHHHHHHHcc--hHHHhccccccccchHHHHhCCCeeeecchhccC
Confidence 433 44444667777777766654 5677899999999999999999988776777653
|
|
| >PRK02227 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.11 Score=47.09 Aligned_cols=196 Identities=19% Similarity=0.206 Sum_probs=119.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCC--CCeeEEEEec----ChhhH---HHHHHHcCC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVHLMIV----EPEQR---VPDFIKAGA 139 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~--~~idaHLmv~----dp~~~---i~~~~~aGA 139 (281)
+.+++|+...+ ++|+|+ ||++|-.-=..=...+.+|++|+...+ +|+-+ -+- +|... +......|+
T Consensus 7 vr~~eEA~~Al-~~GaDi--IDvK~P~~GaLGA~~p~vir~Iv~~~~~~~pvSA--tiGD~p~~p~~~~~aa~~~a~~Gv 81 (238)
T PRK02227 7 VRNLEEALEAL-AGGADI--IDVKNPKEGSLGANFPWVIREIVAAVPGRKPVSA--TIGDVPYKPGTISLAALGAAATGA 81 (238)
T ss_pred cCCHHHHHHHH-hcCCCE--EEccCCCCCCCCCCCHHHHHHHHHHhCCCCCcee--eccCCCCCchHHHHHHHHHHhhCC
Confidence 35777766555 578998 498882100112556888998877533 56665 332 34333 334566899
Q ss_pred CEEEEcccccccccHHHHH-------HHHHHc--CCcEEEE-ECCCC-----CHHHHHHhhc--cCCEEEEEeecCCCCC
Q 023494 140 DIVSVHCEQSSTIHLHRTL-------NQIKDL--GAKAGVV-LNPAT-----SLSAIECVLD--VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l-------~~ik~~--G~k~Gla-i~p~t-----~ie~~~~~l~--~vD~IlvmsV~pG~~G 202 (281)
|+|=+.... ..+..+.+ +..+.+ +.++.-+ ..-.. +...+-+++. ..|.+++=|- +.+|
T Consensus 82 DyVKvGl~~--~~~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l~~~a~~aGf~g~MlDTa--~Kdg 157 (238)
T PRK02227 82 DYVKVGLYG--GKTAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSLPAIAADAGFDGAMLDTA--IKDG 157 (238)
T ss_pred CEEEEcCCC--CCcHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHHHHHHHHcCCCEEEEecc--cCCC
Confidence 999998652 22233333 333332 4444333 33222 3344555553 3677765332 4455
Q ss_pred Cc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC------CHHHHHHHHHHhcC
Q 023494 203 QS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK------DYAEAIKGIKTSKR 275 (281)
Q Consensus 203 Q~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~------dp~~~~~~l~~~~~ 275 (281)
.. |.-...+.+++..+....+| ......|.++.++++.+...++|++=+=+++.... || +.+.++++.+.
T Consensus 158 ~~Lfd~l~~~~L~~Fv~~ar~~G--l~~gLAGSL~~~dip~L~~l~pD~lGfRgavC~g~dR~~~id~-~~V~~~~~~l~ 234 (238)
T PRK02227 158 KSLFDHMDEEELAEFVAEARSHG--LMSALAGSLKFEDIPALKRLGPDILGVRGAVCGGGDRTGRIDP-ELVAELREALR 234 (238)
T ss_pred cchHhhCCHHHHHHHHHHHHHcc--cHhHhcccCchhhHHHHHhcCCCEEEechhccCCCCcccccCH-HHHHHHHHHhh
Confidence 44 44555677777777766654 56788999999999999999999987778888543 33 45666776665
Q ss_pred c
Q 023494 276 P 276 (281)
Q Consensus 276 ~ 276 (281)
.
T Consensus 235 ~ 235 (238)
T PRK02227 235 A 235 (238)
T ss_pred c
Confidence 4
|
|
| >PRK14040 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.045 Score=55.92 Aligned_cols=192 Identities=16% Similarity=0.185 Sum_probs=113.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEE---eeeCcccccccC-CHHHHHHcCcC-CCCCeeEEEEe-------cChh----hHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVD---VMDGRFVPNITI-GPLVVDALRPV-TDLPLDVHLMI-------VEPE----QRVPD 133 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiD---ImDG~fvpn~~~-G~~~I~~ir~~-t~~~idaHLmv-------~dp~----~~i~~ 133 (281)
.+.....+.+.+.|++.+++- -.|.. .+.... -.+.++.+|+. ++.++...+-= .-|. .+++.
T Consensus 27 ~d~l~ia~~ld~~G~~siE~~GGatf~~~-~~~~~e~p~e~lr~l~~~~~~~~lqml~Rg~n~vg~~~ypddvv~~~v~~ 105 (593)
T PRK14040 27 DDMLPIAAKLDKVGYWSLESWGGATFDAC-IRFLGEDPWERLRELKKAMPNTPQQMLLRGQNLLGYRHYADDVVERFVER 105 (593)
T ss_pred HHHHHHHHHHHHcCCCEEEecCCcchhhh-ccccCCCHHHHHHHHHHhCCCCeEEEEecCcceeccccCcHHHHHHHHHH
Confidence 344555667778899987662 01210 122333 34567777775 66666544421 1122 35778
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEE----EEECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG----VVLNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~G----lai~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
+.++|.|++.+-......+.+...++.+|+.|..+- ....|....+.+.+++.. +|.|.+- -..|..
T Consensus 106 a~~~Gid~~rifd~lnd~~~~~~ai~~ak~~G~~~~~~i~yt~~p~~~~~~~~~~a~~l~~~Gad~i~i~----Dt~G~l 181 (593)
T PRK14040 106 AVKNGMDVFRVFDAMNDPRNLETALKAVRKVGAHAQGTLSYTTSPVHTLQTWVDLAKQLEDMGVDSLCIK----DMAGLL 181 (593)
T ss_pred HHhcCCCEEEEeeeCCcHHHHHHHHHHHHHcCCeEEEEEEEeeCCccCHHHHHHHHHHHHHcCCCEEEEC----CCCCCc
Confidence 889999998776432223567789999999999753 234565556655555442 6777552 233443
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc----ccccCCCCHHHHHHHHH
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG----SAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG----SaIf~a~dp~~~~~~l~ 271 (281)
......+.++.+++.+ +++|.+ |-|....|.-..+++|||++=.- +.-+++.+.+..+..|+
T Consensus 182 ~P~~~~~lv~~lk~~~-----~~pi~~H~Hnt~GlA~An~laAieAGa~~vD~ai~glG~~~Gn~~le~vv~~L~ 251 (593)
T PRK14040 182 KPYAAYELVSRIKKRV-----DVPLHLHCHATTGLSTATLLKAIEAGIDGVDTAISSMSMTYGHSATETLVATLE 251 (593)
T ss_pred CHHHHHHHHHHHHHhc-----CCeEEEEECCCCchHHHHHHHHHHcCCCEEEeccccccccccchhHHHHHHHHH
Confidence 4444556677776654 256665 78888889999999999976322 22233444444444444
|
|
| >TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.0028 Score=57.66 Aligned_cols=78 Identities=13% Similarity=0.223 Sum_probs=52.2
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.+.+. +|.+.+.-......++. ..++-++++++.. +.++.++|||+ .+.+.++..+||+.+++
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~---~n~~~i~~i~~~~-----~~pv~~~GGi~s~~d~~~~~~~Ga~~viv 102 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRT---TMIDVVERTAETV-----FIPLTVGGGIKSIEDVDKLLRAGADKVSI 102 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccCh---hhHHHHHHHHHhc-----CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 445555555432 66666655543322222 2344455555543 36899999999 99999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|++.+..+
T Consensus 103 gt~~~~~p 110 (254)
T TIGR00735 103 NTAAVKNP 110 (254)
T ss_pred ChhHhhCh
Confidence 99999643
|
|
| >cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.017 Score=54.59 Aligned_cols=124 Identities=18% Similarity=0.242 Sum_probs=77.8
Q ss_pred HHHcCCCEEEEccccc-----------ccc-------------cHHHHHHHHHHc---CCcEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCEQS-----------STI-------------HLHRTLNQIKDL---GAKAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~-----------~~~-------------~i~~~l~~ik~~---G~k~Glai~p~------t~ie~ 180 (281)
+.++|.|.|-+|.-.. ... -+.++++.+|+. +..+++-+++. ...+.
T Consensus 163 a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~~~~g~~~~e 242 (336)
T cd02932 163 AVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDWVEGGWDLED 242 (336)
T ss_pred HHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEcccccCCCCCCHHH
Confidence 4678999999996320 011 135788888875 45688877753 23433
Q ss_pred HHHhh---c--cCCEEEEEeecCCCCCC---cc-chhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcC-Cc
Q 023494 181 IECVL---D--VVDLVLIMSVNPGFGGQ---SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAG-AN 249 (281)
Q Consensus 181 ~~~~l---~--~vD~IlvmsV~pG~~GQ---~f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aG-AD 249 (281)
..+++ + .+|+|-+.. .|...+ ++ ....++..+++++.. +++|.+.||| +++.+.++++.| +|
T Consensus 243 ~~~ia~~Le~~gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~G~i~t~~~a~~~l~~g~aD 315 (336)
T cd02932 243 SVELAKALKELGVDLIDVSS--GGNSPAQKIPVGPGYQVPFAERIRQEA-----GIPVIAVGLITDPEQAEAILESGRAD 315 (336)
T ss_pred HHHHHHHHHHcCCCEEEECC--CCCCcccccCCCccccHHHHHHHHhhC-----CCCEEEeCCCCCHHHHHHHHHcCCCC
Confidence 33332 2 278876421 112211 11 112234445555543 4789999999 599999999998 99
Q ss_pred EEEEcccccCCCCHH
Q 023494 250 ALVAGSAVFGAKDYA 264 (281)
Q Consensus 250 ~~VvGSaIf~a~dp~ 264 (281)
++-+|++++..++..
T Consensus 316 ~V~~gR~~i~dP~~~ 330 (336)
T cd02932 316 LVALGRELLRNPYWP 330 (336)
T ss_pred eehhhHHHHhCccHH
Confidence 999999999866653
|
YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.091 Score=49.99 Aligned_cols=140 Identities=16% Similarity=0.265 Sum_probs=85.4
Q ss_pred EEEEec---Chhh--HHHHHHH--cCCCEEEEcccccccccHHHHHHHHHHcCCcE-EEEECCCCCHHHHHHhhc-cCCE
Q 023494 120 VHLMIV---EPEQ--RVPDFIK--AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD-VVDL 190 (281)
Q Consensus 120 aHLmv~---dp~~--~i~~~~~--aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~-Glai~p~t~ie~~~~~l~-~vD~ 190 (281)
-++++. .+.. .++.+.+ +|+|.|++-......+...+.++.+|+.--++ -++=|..|+- ..+.++. .+|.
T Consensus 97 ~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~AhGhs~~~i~~ik~ik~~~P~~~vIaGNV~T~e-~a~~Li~aGAD~ 175 (346)
T PRK05096 97 KHVMVSTGTSDADFEKTKQILALSPALNFICIDVANGYSEHFVQFVAKAREAWPDKTICAGNVVTGE-MVEELILSGADI 175 (346)
T ss_pred ceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHHhCCCCcEEEecccCHH-HHHHHHHcCCCE
Confidence 445553 4443 4667777 59999998655432345667888888753233 3344555554 4555555 5897
Q ss_pred EEEEeecCCC--CCCc---c-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CC
Q 023494 191 VLIMSVNPGF--GGQS---F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD 262 (281)
Q Consensus 191 IlvmsV~pG~--~GQ~---f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~d 262 (281)
|-+ ++=||- .-+. + .| .+.-|.+..+... .++.+|..||||. ..++.+.+.+|||.+-+||-+-+. +.
T Consensus 176 vKV-GIGpGSiCtTr~vtGvG~P-QltAV~~~a~~a~--~~gvpiIADGGi~~sGDI~KAlaaGAd~VMlGsllAGt~Es 251 (346)
T PRK05096 176 VKV-GIGPGSVCTTRVKTGVGYP-QLSAVIECADAAH--GLGGQIVSDGGCTVPGDVAKAFGGGADFVMLGGMLAGHEES 251 (346)
T ss_pred EEE-cccCCccccCccccccChh-HHHHHHHHHHHHH--HcCCCEEecCCcccccHHHHHHHcCCCEEEeChhhcCcccC
Confidence 754 444552 1111 1 12 2333444444433 3457899999999 779999999999999999988754 34
Q ss_pred HH
Q 023494 263 YA 264 (281)
Q Consensus 263 p~ 264 (281)
|.
T Consensus 252 PG 253 (346)
T PRK05096 252 GG 253 (346)
T ss_pred CC
Confidence 43
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.053 Score=51.24 Aligned_cols=143 Identities=10% Similarity=0.176 Sum_probs=92.4
Q ss_pred CCCCeeEEEEecChhhHHHH---HHHcCCCEEEEccccc---------------ccccHHHHHHHHHHc-CCcEEEEECC
Q 023494 114 TDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 174 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~-G~k~Glai~p 174 (281)
.+.|+.+.|..+||+.+.+. +.+.|+|.|=++.-+. ..+-+.++++.+++. ++.+.+=+..
T Consensus 53 ~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~IDlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvKiR~ 132 (318)
T TIGR00742 53 EESPVALQLGGSDPNDLAKCAKIAEKRGYDEINLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVKHRI 132 (318)
T ss_pred CCCcEEEEEccCCHHHHHHHHHHHHhCCCCEEEEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEEEec
Confidence 35799999999999987553 4467999999986542 011256788888874 6777776654
Q ss_pred CC----CHHHHHHh---hc--cCCEEEEEeecC---CCCCCc---cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hh
Q 023494 175 AT----SLSAIECV---LD--VVDLVLIMSVNP---GFGGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PK 238 (281)
Q Consensus 175 ~t----~ie~~~~~---l~--~vD~IlvmsV~p---G~~GQ~---f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e 238 (281)
.. ..+...++ +. .+|.|.+.+... |++|.. ..|.-++.|.++++... +++|..-|||. .+
T Consensus 133 g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~~~i~~vk~~~~----~ipVi~NGdI~s~~ 208 (318)
T TIGR00742 133 GIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRYERVYQLKKDFP----HLTIEINGGIKNSE 208 (318)
T ss_pred CCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhHHHHHHHHHhCC----CCcEEEECCcCCHH
Confidence 32 11222222 22 378775543321 233321 22334566766665432 47888899998 88
Q ss_pred cHHHHHHcCCcEEEEcccccCCC
Q 023494 239 NAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 239 ~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.++.+ |+|.+-+|++++..+
T Consensus 209 da~~~l~-g~dgVMigRgal~nP 230 (318)
T TIGR00742 209 QIKQHLS-HVDGVMVGREAYENP 230 (318)
T ss_pred HHHHHHh-CCCEEEECHHHHhCC
Confidence 8888875 999999999988644
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK00042 tpiA triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.024 Score=51.89 Aligned_cols=139 Identities=17% Similarity=0.262 Sum_probs=82.4
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCH-----------HHHHHhhccCCE---
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSL-----------SAIECVLDVVDL--- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-----------e~~~~~l~~vD~--- 190 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+.+.+-+.-.... +.+...++.++.
T Consensus 79 ~~mLkd~G~~~viiGHSERR~~f~Etd~~v~~K~~~a~~~gl~pIvCiGEt~~~r~~g~~~~v~~~Ql~~~l~~~~~~~~ 158 (250)
T PRK00042 79 AEMLKDLGVKYVIIGHSERRQYFGETDELVNKKVKAALKAGLTPILCVGETLEEREAGKTEEVVARQLEAALAGLSAEQF 158 (250)
T ss_pred HHHHHHCCCCEEEeCcccccCccCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHcCChHHHHHHHHHHHHccCCHHHh
Confidence 678899999999885 221 013344444555899999998877522111 112223332221
Q ss_pred -EEEEeecCCC---CCCccchhHHHHH-HHHHHHhhh----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccccCC
Q 023494 191 -VLIMSVNPGF---GGQSFIESQVKKI-SDLRRMCLE----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA 260 (281)
Q Consensus 191 -IlvmsV~pG~---~GQ~f~~~~l~kI-~~lr~l~~~----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf~a 260 (281)
=++..-+|-+ +|..-.++-.+.+ +.+|+.+.+ ...+.+|.-.|+|+++|+.++ ...++|++-+|++..+.
T Consensus 159 ~~~vIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~vDG~LVG~Asl~~ 238 (250)
T PRK00042 159 ANLVIAYEPVWAIGTGKTATPEQAQEVHAFIRAVLAELYGEVAEKVRILYGGSVKPDNAAELMAQPDIDGALVGGASLKA 238 (250)
T ss_pred CCEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcccccCCceEEEcCCCCHHHHHHHhcCCCCCEEEEeeeeech
Confidence 0122346632 3544334333332 233333321 123467889999999999865 67789999999999988
Q ss_pred CCHHHHHHH
Q 023494 261 KDYAEAIKG 269 (281)
Q Consensus 261 ~dp~~~~~~ 269 (281)
+++.+.++.
T Consensus 239 ~~f~~ii~~ 247 (250)
T PRK00042 239 EDFLAIVKA 247 (250)
T ss_pred HHHHHHHHH
Confidence 887766653
|
|
| >PLN02617 imidazole glycerol phosphate synthase hisHF | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0058 Score=61.60 Aligned_cols=81 Identities=14% Similarity=0.039 Sum_probs=59.3
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh------------hcHH
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------------KNAY 241 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~------------e~i~ 241 (281)
..|++..+.|-+ .+|.+.++-...-..+..-+...++-|+++.+.+ .++++|.|||+. |.++
T Consensus 267 gdPve~a~~y~~~Gadel~~~Di~~~~~~~~~~~~~~~~i~~i~~~~-----~ip~~vGGGIr~~~d~~~~~~~~~e~~~ 341 (538)
T PLN02617 267 GKPVELAGQYYKDGADEVAFLNITGFRDFPLGDLPMLEVLRRASENV-----FVPLTVGGGIRDFTDANGRYYSSLEVAS 341 (538)
T ss_pred CCHHHHHHHHHHcCCCEEEEEECCCCcCCcccchhHHHHHHHHHhhC-----CCCEEEcCCccccccccccccchHHHHH
Confidence 356777777765 4999998877642233333444566676666543 478999999995 6799
Q ss_pred HHHHcCCcEEEEcccccCC
Q 023494 242 KVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 242 ~~~~aGAD~~VvGSaIf~a 260 (281)
.++++|||-+++||+-++.
T Consensus 342 ~~l~~GadkV~i~s~Av~~ 360 (538)
T PLN02617 342 EYFRSGADKISIGSDAVYA 360 (538)
T ss_pred HHHHcCCCEEEEChHHHhC
Confidence 9999999999999987764
|
|
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.034 Score=52.67 Aligned_cols=125 Identities=17% Similarity=0.189 Sum_probs=78.2
Q ss_pred hHHHHHHHcC--CCEEEEcccccccccHHHHHHHHHHcCCcE-EEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC---
Q 023494 129 QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--- 201 (281)
Q Consensus 129 ~~i~~~~~aG--Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~-Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--- 201 (281)
+.+..+.++| +|.|.+-..........+.++++|+.--.+ -+.=|. ...+..+.+.+ .+|.|.+ ++.||..
T Consensus 97 ~r~~~lv~a~~~~d~i~~D~ahg~s~~~~~~i~~i~~~~p~~~vi~GnV-~t~e~a~~l~~aGad~I~V-~~G~G~~~~t 174 (321)
T TIGR01306 97 EFVTQLAEEALTPEYITIDIAHGHSNSVINMIKHIKTHLPDSFVIAGNV-GTPEAVRELENAGADATKV-GIGPGKVCIT 174 (321)
T ss_pred HHHHHHHhcCCCCCEEEEeCccCchHHHHHHHHHHHHhCCCCEEEEecC-CCHHHHHHHHHcCcCEEEE-CCCCCccccc
Confidence 3577788988 798887653321234556778888753222 222222 25556666655 4888864 4445431
Q ss_pred ----CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 202 ----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 202 ----GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|..+....+.-|.++++.. +.+|..||||. ..++.+++.+|||.+-+|+.+-+.
T Consensus 175 r~~~g~g~~~~~l~ai~ev~~a~-----~~pVIadGGIr~~~Di~KALa~GAd~Vmig~~~ag~ 233 (321)
T TIGR01306 175 KIKTGFGTGGWQLAALRWCAKAA-----RKPIIADGGIRTHGDIAKSIRFGASMVMIGSLFAGH 233 (321)
T ss_pred eeeeccCCCchHHHHHHHHHHhc-----CCeEEEECCcCcHHHHHHHHHcCCCEEeechhhcCc
Confidence 1122222344555555532 36899999999 668889999999999999887653
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >PLN02429 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.025 Score=53.32 Aligned_cols=139 Identities=14% Similarity=0.220 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCC-----------HHHHHHhhccCCE--E
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-----------LSAIECVLDVVDL--V 191 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~-----------ie~~~~~l~~vD~--I 191 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+.+.+-+.-... .+.++..++.++. =
T Consensus 140 a~mLkd~Gv~~ViiGHSERR~~f~Etd~~V~~Kv~~al~~GL~pIvCIGE~l~ere~g~t~~vi~~Ql~~~l~~v~~~~~ 219 (315)
T PLN02429 140 VEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVPSWDN 219 (315)
T ss_pred HHHHHHcCCCEEEeCccccCCCCCcCHHHHHHHHHHHHHCcCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHccCCcccc
Confidence 678999999999885 221 02334445455588999998887752210 0134444544321 0
Q ss_pred EEEeecCCC---CCCccchhHHHHHH-HHHHHhhh-----cCCCCeEEEecCCChhcHHHHH-HcCCcEEEEcccccCCC
Q 023494 192 LIMSVNPGF---GGQSFIESQVKKIS-DLRRMCLE-----KGVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFGAK 261 (281)
Q Consensus 192 lvmsV~pG~---~GQ~f~~~~l~kI~-~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaIf~a~ 261 (281)
++..-+|-+ +|+.-.|+-.+.+. .+|+.+.+ ...+++|.-.|+|+++|+.++. +.++|++-+|++..+.+
T Consensus 220 ivIAYEPvWAIGTGk~as~e~~~~v~~~IR~~l~~~~~~~va~~irILYGGSV~~~N~~el~~~~diDG~LVGgASL~~~ 299 (315)
T PLN02429 220 IVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGP 299 (315)
T ss_pred eEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHHhhhhhccCceEEEcCccCHHHHHHHhcCCCCCEEEeecceecHH
Confidence 123446632 35544444444332 23333321 1235789899999999998764 78999999999999877
Q ss_pred CHHHHHHH
Q 023494 262 DYAEAIKG 269 (281)
Q Consensus 262 dp~~~~~~ 269 (281)
++.+.++.
T Consensus 300 ~F~~Ii~~ 307 (315)
T PLN02429 300 EFATIVNS 307 (315)
T ss_pred HHHHHHHH
Confidence 77665544
|
|
| >TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.0048 Score=55.07 Aligned_cols=78 Identities=19% Similarity=0.298 Sum_probs=53.8
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
+|++.++.|-+ .++.+.+..++-...++...-.. ++++++.. +.++.++|||+ .+.+..+.++|+|.+++
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~---~~~i~~~~-----~~pv~~~ggi~~~~d~~~~~~~G~~~vil 102 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFEL---ISNLAEEC-----FMPLTVGGGIRSLEDAKKLLSLGADKVSI 102 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHH---HHHHHHhC-----CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 56666666644 37888776665433333333333 44444432 36899999999 78999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|++++...
T Consensus 103 g~~~l~~~ 110 (232)
T TIGR03572 103 NTAALENP 110 (232)
T ss_pred ChhHhcCH
Confidence 99998643
|
This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr |
| >PTZ00333 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.04 Score=50.55 Aligned_cols=136 Identities=15% Similarity=0.233 Sum_probs=86.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccCCE-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVVDL- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~vD~- 190 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+.+.+-+.-... . +.++..++.++.
T Consensus 82 ~~mL~d~G~~~viiGHSERR~~f~E--td~~I~~Kv~~al~~gl~pIlCvGE~~~~~~~~~~~~~v~~Ql~~~l~~v~~~ 159 (255)
T PTZ00333 82 AEMLKDLGINWTILGHSERRQYFGE--TNEIVAQKVKNALENGLKVILCIGETLEEREAGQTSDVLSKQLEAIVKKVSDE 159 (255)
T ss_pred HHHHHHcCCCEEEECcccccCcCCC--CcHHHHHHHHHHHHCCCEEEEEcCCCHHHHhCCCHHHHHHHHHHHHHhcCCHH
Confidence 568899999999885 34 3567888888999999999887753210 0 134444443321
Q ss_pred ---EEEEeecCCC---CCCccchhHHHH-HHHHHHHhhh-----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccc
Q 023494 191 ---VLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAV 257 (281)
Q Consensus 191 ---IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaI 257 (281)
=++..-+|-+ +|+.-.|+..++ .+.+|+.+.+ ...+.+|.-.|+|+++|+.++ ...++|++-+|++.
T Consensus 160 ~~~~iiIAYEPvWAIGtg~~a~~e~i~~~~~~IR~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~vDG~LvG~as 239 (255)
T PTZ00333 160 AWDNIVIAYEPVWAIGTGKVATPEQAQEVHAFIRKWLAEKVGADVAEATRIIYGGSVNEKNCKELIKQPDIDGFLVGGAS 239 (255)
T ss_pred HcceEEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEcCCCCHHHHHHHhcCCCCCEEEEehHh
Confidence 0123346633 365555544432 3344444332 122478889999999999765 57789999999998
Q ss_pred cCCCCHHHHHHH
Q 023494 258 FGAKDYAEAIKG 269 (281)
Q Consensus 258 f~a~dp~~~~~~ 269 (281)
.+ +++.+-++.
T Consensus 240 l~-~~f~~Ii~~ 250 (255)
T PTZ00333 240 LK-PDFVDIIKS 250 (255)
T ss_pred hh-hhHHHHHHH
Confidence 87 466655543
|
|
| >PRK13523 NADPH dehydrogenase NamA; Provisional | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.022 Score=54.13 Aligned_cols=125 Identities=16% Similarity=0.215 Sum_probs=78.4
Q ss_pred HHHcCCCEEEEcccc--------cc-c---------------ccHHHHHHHHHHc-CCcEEEEECCC------CCHHHHH
Q 023494 134 FIKAGADIVSVHCEQ--------SS-T---------------IHLHRTLNQIKDL-GAKAGVVLNPA------TSLSAIE 182 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea--------~~-~---------------~~i~~~l~~ik~~-G~k~Glai~p~------t~ie~~~ 182 (281)
+.++|.|+|-+|.-. ++ . .-+.++++.+|+. +..+++=+++. ...++..
T Consensus 151 a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~~G~~~~e~~ 230 (337)
T PRK13523 151 AKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHPGGLTVQDYV 230 (337)
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCCHHHHH
Confidence 467899999999652 01 0 0145788888875 56778777763 2344333
Q ss_pred Hh---hc--cCCEEEEEeecCCCC----CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEE
Q 023494 183 CV---LD--VVDLVLIMSVNPGFG----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANAL 251 (281)
Q Consensus 183 ~~---l~--~vD~IlvmsV~pG~~----GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~ 251 (281)
++ ++ .+|+|-+. .|.. .+.+....++-.+++++.. ++++.+-|+|+ ++.+.++++.| +|.+
T Consensus 231 ~i~~~l~~~gvD~i~vs---~g~~~~~~~~~~~~~~~~~~~~ik~~~-----~ipVi~~G~i~~~~~a~~~l~~g~~D~V 302 (337)
T PRK13523 231 QYAKWMKEQGVDLIDVS---SGAVVPARIDVYPGYQVPFAEHIREHA-----NIATGAVGLITSGAQAEEILQNNRADLI 302 (337)
T ss_pred HHHHHHHHcCCCEEEeC---CCCCCCCCCCCCccccHHHHHHHHhhc-----CCcEEEeCCCCCHHHHHHHHHcCCCChH
Confidence 33 32 27998763 2221 1111111233344455443 46888899996 88999999987 9999
Q ss_pred EEcccccCCCCHHHH
Q 023494 252 VAGSAVFGAKDYAEA 266 (281)
Q Consensus 252 VvGSaIf~a~dp~~~ 266 (281)
-+|+++...++....
T Consensus 303 ~~gR~~iadP~~~~k 317 (337)
T PRK13523 303 FIGRELLRNPYFPRI 317 (337)
T ss_pred HhhHHHHhCccHHHH
Confidence 999999987765433
|
|
| >COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.071 Score=47.98 Aligned_cols=184 Identities=19% Similarity=0.222 Sum_probs=102.2
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+..|++.--..-.+.++.+.++|+..+ | -|- -.+.+-.++++..+ .+.-|+.=.=-.+-++.+++ -+
T Consensus 27 ~V~LvAVSK~~~~~~I~~~~~aG~r~f------G---ENrvQe~~~K~~~l~~~~--~i~WHfIG~LQsNK~k~v~~-~~ 94 (228)
T COG0325 27 SVTLVAVSKTVPAEDIREAYEAGQRHF------G---ENRVQEALDKIEALKDLP--DIEWHFIGPLQSNKVKLVAE-NF 94 (228)
T ss_pred cEEEEEEeCCCCHHHHHHHHHcCChhh------c---chHHHHHHHHHHhcCcCC--CeEEEEechhhhhHHHHHHh-hc
Confidence 345566655555577888888888632 3 221 12223333333322 26666643211224444444 34
Q ss_pred CEEEEcccccccccHHHHHHH-HHHcC--CcEEEEECC-------CCCHHHHHHhhcc------CCEEEEEeecCCCCCC
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQ-IKDLG--AKAGVVLNP-------ATSLSAIECVLDV------VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~-ik~~G--~k~Glai~p-------~t~ie~~~~~l~~------vD~IlvmsV~pG~~GQ 203 (281)
|++ |.-+ ...+...|++ +.+.+ .++-|=+|. +++.+.+..+++. +-+.-+|++.|=....
T Consensus 95 ~~i--hSlD--r~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L~l~GLM~ipp~~~d~ 170 (228)
T COG0325 95 DWI--HSLD--RLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNLELRGLMTIPPLTDDP 170 (228)
T ss_pred cee--eecC--HHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCCeEeEEEeeCCCCCCH
Confidence 444 4332 1223333333 34444 566665553 2445666655543 5678899997743333
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
.-....+.+++++++.+..++..+ -+.-=|.+- ..+..++.||.+|=+||+||++.+
T Consensus 171 ~~~~~~F~~l~~l~~~l~~~~~~~-~~LSMGMS~-D~e~AI~~GaT~VRIGtaiFg~r~ 227 (228)
T COG0325 171 EEIFAVFRKLRKLFDELKAKYPPI-DELSMGMSN-DYEIAIAEGATMVRIGTAIFGARD 227 (228)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC-CeecCcCcc-cHHHHHHcCCCEEEEcHHhhCCCC
Confidence 334556778888777776554322 123445553 677889999999999999998754
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.032 Score=53.02 Aligned_cols=131 Identities=17% Similarity=0.255 Sum_probs=81.4
Q ss_pred HHHHHHHcC--CCEEEEcccccccccHHHHHHHHHHcC-CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--CCC
Q 023494 130 RVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF--GGQ 203 (281)
Q Consensus 130 ~i~~~~~aG--Ad~Itvh~Ea~~~~~i~~~l~~ik~~G-~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~--~GQ 203 (281)
.++.+.++| +|.|.+-......+...+.++++|+.- -..-++=|-.|+- ..+.+++ .+|.|.+ ++=||. +++
T Consensus 111 r~~~L~~a~~~~d~iviD~AhGhs~~~i~~ik~ir~~~p~~~viaGNV~T~e-~a~~Li~aGAD~ikV-giGpGSicttR 188 (343)
T TIGR01305 111 KMTSILEAVPQLKFICLDVANGYSEHFVEFVKLVREAFPEHTIMAGNVVTGE-MVEELILSGADIVKV-GIGPGSVCTTR 188 (343)
T ss_pred HHHHHHhcCCCCCEEEEECCCCcHHHHHHHHHHHHhhCCCCeEEEecccCHH-HHHHHHHcCCCEEEE-cccCCCcccCc
Confidence 467788885 999998654332344667788888752 2333333444444 4445544 5898765 555553 233
Q ss_pred ccch---hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHH
Q 023494 204 SFIE---SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYA 264 (281)
Q Consensus 204 ~f~~---~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~ 264 (281)
.... -.+.-|.+..+... +++.+|..||||. ..++-+.+.+|||.+-+|+.+-.. +.|.
T Consensus 189 ~~~Gvg~pqltAv~~~a~aa~--~~~v~VIaDGGIr~~gDI~KALA~GAd~VMlG~llAG~~Espg 252 (343)
T TIGR01305 189 TKTGVGYPQLSAVIECADAAH--GLKGHIISDGGCTCPGDVAKAFGAGADFVMLGGMFAGHTESGG 252 (343)
T ss_pred eeCCCCcCHHHHHHHHHHHhc--cCCCeEEEcCCcCchhHHHHHHHcCCCEEEECHhhhCcCcCcc
Confidence 2211 13444555555433 3467899999999 668889999999999999766543 3444
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >PRK14042 pyruvate carboxylase subunit B; Provisional | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.081 Score=54.08 Aligned_cols=171 Identities=16% Similarity=0.165 Sum_probs=109.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccccc---cC-CHHHHHHcCcC-CCCCeeEEE----Ee---cChh----hHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPNI---TI-GPLVVDALRPV-TDLPLDVHL----MI---VEPE----QRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~---~~-G~~~I~~ir~~-t~~~idaHL----mv---~dp~----~~i~~ 133 (281)
++......+.++|...+++- -| +|=-.+ .+ -.+.++.+|+. ++.++...+ .+ .-|. .+++.
T Consensus 27 d~~~ia~~~d~~g~~siE~~--gGatfd~~~rfl~edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~ 104 (596)
T PRK14042 27 DMLPICNKMDDVGFWAMEVW--GGATFDACLRFLKEDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKL 104 (596)
T ss_pred HHHHHHHHHHhcCCCEEEee--CCcccceeecccCCCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHH
Confidence 33444556666787776553 22 121122 22 34567888875 777888766 22 2232 36777
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE----ECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV----LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla----i~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
+.+.|.|.+-+-......+++...++.+|+.|+.+-.+ .+|-..++.+.++++. +|.|.+- -..|..
T Consensus 105 a~~~Gidv~Rifd~lnd~~n~~~~i~~~k~~G~~~~~~i~yt~sp~~t~e~~~~~ak~l~~~Gad~I~Ik----DtaG~l 180 (596)
T PRK14042 105 AVNNGVDVFRVFDALNDARNLKVAIDAIKSHKKHAQGAICYTTSPVHTLDNFLELGKKLAEMGCDSIAIK----DMAGLL 180 (596)
T ss_pred HHHcCCCEEEEcccCcchHHHHHHHHHHHHcCCEEEEEEEecCCCCCCHHHHHHHHHHHHHcCCCEEEeC----CcccCC
Confidence 88999998877654323567888999999999987655 4566666666655443 6766552 334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
....+.+.++.+++.+ +++|.+ +-|....|.-..+++|||+|=
T Consensus 181 ~P~~v~~lv~alk~~~-----~ipi~~H~Hnt~Gla~an~laAieaGad~iD 227 (596)
T PRK14042 181 TPTVTVELYAGLKQAT-----GLPVHLHSHSTSGLASICHYEAVLAGCNHID 227 (596)
T ss_pred CHHHHHHHHHHHHhhc-----CCEEEEEeCCCCCcHHHHHHHHHHhCCCEEE
Confidence 4445566677777653 356666 778888888899999999763
|
|
| >PRK15492 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.024 Score=52.08 Aligned_cols=135 Identities=15% Similarity=0.178 Sum_probs=82.6
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC--C
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV--D 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v--D 189 (281)
.+++.++|++++.+. .|- .+++.+.+-++.+.++|+.+.+-+.- +.+. ++..+..+ |
T Consensus 87 a~mLkd~G~~~viiGHSERR~~f~Etd~~v~~Kv~~a~~~gl~pIvCiGE--~~e~r~~g~~~~v~~~Ql~~~l~~~~~~ 164 (260)
T PRK15492 87 PLMLKEIGTQLVMIGHSERRHKFGETDQEENAKVLAALKHDFTTLLCVGE--TLEQKNYGISDEILRTQLKIGLHGINPD 164 (260)
T ss_pred HHHHHHcCCCEEEECccccccccCcchHHHHHHHHHHHHCCCEEEEEcCC--cHHHHHcCCHHHHHHHHHHHHHhcCCHh
Confidence 567899999998875 221 02455667788889999998887752 2221 22222222 2
Q ss_pred E--EEEEeecC----CCCCCccch----hHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccc
Q 023494 190 L--VLIMSVNP----GFGGQSFIE----SQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAV 257 (281)
Q Consensus 190 ~--IlvmsV~p----G~~GQ~f~~----~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaI 257 (281)
. =++..-+| |.+|..-.| ++.+.|++. .+++.+...+++|.-.|+|+++|+.++.. ..+|++-+|++=
T Consensus 165 ~~~~iiIAYEPvWAIGtgg~~as~e~~~~~~~~Ir~~l~~~~~~~~~~irILYGGSV~~~N~~~l~~~~diDG~LvG~aS 244 (260)
T PRK15492 165 QLAKLRIAYEPVWAIGEAGIPASADYADEKHAVIKQCLIELFGDAGDDIPVFYGGSVNAENANELFGQPHIDGLFIGRSA 244 (260)
T ss_pred hcCceEEEECChHHhCCCCCCCCHHHHHHHHHHHHHHHHHHhccccCceeEEEcCccCHHHHHHHhcCCCCCEEEeehhh
Confidence 1 12234456 554655545 344445543 33333223357888999999999999854 459999999987
Q ss_pred cCCCCHHHHH
Q 023494 258 FGAKDYAEAI 267 (281)
Q Consensus 258 f~a~dp~~~~ 267 (281)
.+.++..+.+
T Consensus 245 l~~~~F~~Ii 254 (260)
T PRK15492 245 WDADKFFAII 254 (260)
T ss_pred cCHHHHHHHH
Confidence 7655444443
|
|
| >cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.74 E-value=0.086 Score=48.53 Aligned_cols=183 Identities=14% Similarity=0.213 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH---HHHcCcC--CCCCeeEEEEecCh------hhHHHHHHHcCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV---VDALRPV--TDLPLDVHLMIVEP------EQRVPDFIKAGA 139 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~---I~~ir~~--t~~~idaHLmv~dp------~~~i~~~~~aGA 139 (281)
...+.++.|.++|++.|++ |. |. .++.. ++++++. .+..+.+..+...+ .+.++.+.++|+
T Consensus 21 ~k~~i~~~L~~~Gv~~IE~----G~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~a~~~g~ 92 (273)
T cd07941 21 DKLRIARKLDELGVDYIEG----GW--PG--SNPKDTEFFARAKKLKLKHAKLAAFGSTRRAGVKAEEDPNLQALLEAGT 92 (273)
T ss_pred HHHHHHHHHHHcCCCEEEe----cC--Cc--CCHHHHHHHHHHHHcCCCCcEEEEEecccccCCCccchHHHHHHHhCCC
Confidence 3446677888999998887 42 21 23333 4444332 13344443322222 235778899999
Q ss_pred CEEEEccccc--------------ccccHHHHHHHHHHcCCcEEE---EEC--CCCCHHHHHHhhc-----cCCEEEEEe
Q 023494 140 DIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGV---VLN--PATSLSAIECVLD-----VVDLVLIMS 195 (281)
Q Consensus 140 d~Itvh~Ea~--------------~~~~i~~~l~~ik~~G~k~Gl---ai~--p~t~ie~~~~~l~-----~vD~Ilvms 195 (281)
+.|.+-.-+. ..+.+.+.++.+|+.|+++.+ .+. +.++.+.+.++.. .+|.|.+
T Consensus 93 ~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~g~~~i~l-- 170 (273)
T cd07941 93 PVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWLVL-- 170 (273)
T ss_pred CEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEeccccCCCCHHHHHHHHHHHHhCCCCEEEE--
Confidence 9887742110 112356788899999998876 331 2345665555543 2676654
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAE 265 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~ 265 (281)
+-..|......+.+.++.+++.++ +.+|++ |=|....|.-..+++||+.+ -+++. ++.+.+.
T Consensus 171 --~DT~G~~~P~~v~~lv~~l~~~~~----~~~l~~H~Hnd~Gla~An~laA~~aGa~~i--d~s~~GlGeraGn~~~e~ 242 (273)
T cd07941 171 --CDTNGGTLPHEIAEIVKEVRERLP----GVPLGIHAHNDSGLAVANSLAAVEAGATQV--QGTINGYGERCGNANLCS 242 (273)
T ss_pred --ecCCCCCCHHHHHHHHHHHHHhCC----CCeeEEEecCCCCcHHHHHHHHHHcCCCEE--EEeccccccccccccHHH
Confidence 233454444555566777776553 245665 77888889999999999975 23332 2345555
Q ss_pred HHHHHH
Q 023494 266 AIKGIK 271 (281)
Q Consensus 266 ~~~~l~ 271 (281)
.+..|+
T Consensus 243 ~~~~L~ 248 (273)
T cd07941 243 IIPNLQ 248 (273)
T ss_pred HHHHHH
Confidence 555553
|
Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in |
| >PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0075 Score=54.68 Aligned_cols=78 Identities=14% Similarity=0.256 Sum_probs=53.7
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++..+.+.. .+|.+.+.....-..++ +..++-|+++++.. ++++.++|||+ .+++.++.+.|+|.+++
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~-----~ipv~~~GGi~s~~~~~~~l~~Ga~~Vii 102 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQV-----FIPLTVGGGIRSVEDARRLLRAGADKVSI 102 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhC-----CCCEEeeCCCCCHHHHHHHHHcCCCEEEE
Confidence 44555555433 36777766555421222 34455666665543 47899999999 89999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|+..+..+
T Consensus 103 gt~~l~~p 110 (253)
T PRK02083 103 NSAAVANP 110 (253)
T ss_pred ChhHhhCc
Confidence 99998753
|
|
| >cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.04 Score=50.45 Aligned_cols=169 Identities=17% Similarity=0.105 Sum_probs=104.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcC----CCEEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAG----ADIVSV 144 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aG----Ad~Itv 144 (281)
....+.++.|.++|++.|++ |.|+-+- -..+.++.+++. ++..+.+... .+ .+.++.+.++| ++.|.+
T Consensus 20 ~~k~~i~~~L~~~Gv~~iEv----g~~~~~~-~~~~~~~~l~~~~~~~~~~~l~r-~~-~~~v~~a~~~~~~~~~~~i~i 92 (268)
T cd07940 20 EEKLEIARQLDELGVDVIEA----GFPAASP-GDFEAVKRIAREVLNAEICGLAR-AV-KKDIDAAAEALKPAKVDRIHT 92 (268)
T ss_pred HHHHHHHHHHHHcCCCEEEE----eCCCCCH-HHHHHHHHHHHhCCCCEEEEEcc-CC-HhhHHHHHHhCCCCCCCEEEE
Confidence 34556778888999999888 4433110 012566766653 4455554321 12 23578888888 998888
Q ss_pred ccccc--------------ccccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCC
Q 023494 145 HCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 145 h~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ 203 (281)
..-.. ..+.+.+.++.+|+.|.++.+... +.++.+.+.++.+. +|.|.+ +-..|.
T Consensus 93 ~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G~ 168 (268)
T cd07940 93 FIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVEFSAEDATRTDLDFLIEVVEAAIEAGATTINI----PDTVGY 168 (268)
T ss_pred EecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEeeecCCCCCHHHHHHHHHHHHHcCCCEEEE----CCCCCC
Confidence 64210 023456788899999988776432 23566666665543 566654 233455
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
....++.+.++.+++.++. .+++|.+ |-|....|.-..+++|+++|
T Consensus 169 ~~P~~v~~lv~~l~~~~~~--~~i~l~~H~Hn~~GlA~An~laAi~aG~~~i 218 (268)
T cd07940 169 LTPEEFGELIKKLKENVPN--IKVPISVHCHNDLGLAVANSLAAVEAGARQV 218 (268)
T ss_pred CCHHHHHHHHHHHHHhCCC--CceeEEEEecCCcchHHHHHHHHHHhCCCEE
Confidence 5555666677777765432 1245665 66777778889999999976
|
2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h |
| >COG2070 Dioxygenases related to 2-nitropropane dioxygenase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.032 Score=53.11 Aligned_cols=131 Identities=15% Similarity=0.204 Sum_probs=88.2
Q ss_pred eeEEEEec--Ch-hhHHHHHHHc-CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEE
Q 023494 118 LDVHLMIV--EP-EQRVPDFIKA-GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVL 192 (281)
Q Consensus 118 idaHLmv~--dp-~~~i~~~~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Il 192 (281)
+.+.+++. ++ ....+..++. |.-.++++.-. .+.+.++.++..|.++...+- .....+.... -+|.|.
T Consensus 80 v~~~~l~~~~~~~~~~~~~ii~~~~vpvv~~~~g~----~~~~~i~~~~~~g~~v~~~v~---~~~~A~~~~~~G~d~vI 152 (336)
T COG2070 80 VNVNILVARRNAAEAGVDAIIEGAGVPVVSTSFGA----PPAEFVARLKAAGIKVIHSVI---TVREALKAERAGADAVI 152 (336)
T ss_pred chhheecccccchHHhhhhHHhcCCCCEEeccCCC----CcHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhCCCCEEE
Confidence 44555553 22 2345555554 88888888652 267889999999998887652 3444444433 378777
Q ss_pred EEeecCCC-CCC-ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 193 IMSVNPGF-GGQ-SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 193 vmsV~pG~-~GQ-~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
...-+.|- .|. ...+.++.-+.++++.++. +++...|||. .+.+......|||.+-+||.+..
T Consensus 153 ~~g~eAGGH~g~~~~~~~t~~Lv~ev~~~~~~----iPViAAGGI~dg~~i~AAlalGA~gVq~GT~Fl~ 218 (336)
T COG2070 153 AQGAEAGGHRGGVDLEVSTFALVPEVVDAVDG----IPVIAAGGIADGRGIAAALALGADGVQMGTRFLA 218 (336)
T ss_pred ecCCcCCCcCCCCCCCccHHHHHHHHHHHhcC----CCEEEecCccChHHHHHHHHhccHHHHhhhhhhc
Confidence 65544432 232 2255667777787777532 7899999998 77888899999999999988653
|
|
| >TIGR00284 dihydropteroate synthase-related protein | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.091 Score=52.63 Aligned_cols=182 Identities=17% Similarity=0.113 Sum_probs=95.4
Q ss_pred CceEeEEEeccCcc-CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFA-KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~-~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
.++|..=|..+..+ .+.+..+.+.+.|+|+| ||==+...|....=...|+.+++.++.|+-+| +.+|. .++.+.
T Consensus 151 ~~~v~aEI~~a~~l~~i~~~A~~~~~~GADII--DIG~~st~p~~~~v~~~V~~l~~~~~~pISID--T~~~~-v~eaAL 225 (499)
T TIGR00284 151 PLRVVAEIPPTVAEDGIEGLAARMERDGADMV--ALGTGSFDDDPDVVKEKVKTALDALDSPVIAD--TPTLD-ELYEAL 225 (499)
T ss_pred CeEEEEEEcCCcchHHHHHHHHHHHHCCCCEE--EECCCcCCCcHHHHHHHHHHHHhhCCCcEEEe--CCCHH-HHHHHH
Confidence 45666666655443 24455566678899885 44333333421111245666666556665553 34444 677788
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECC-CCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP-ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p-~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
++|||+|-=- . .....+.+..++++|..+.+.-.. ....+.+.+.++. ++-|. ++||++-+.+ ..
T Consensus 226 ~aGAdiINsV-s---~~~~d~~~~l~a~~g~~vVlm~~~~~~~~~~l~~~ie~a~~~Gi~~II---lDPglg~~~~--~l 296 (499)
T TIGR00284 226 KAGASGVIMP-D---VENAVELASEKKLPEDAFVVVPGNQPTNYEELAKAVKKLRTSGYSKVA---ADPSLSPPLL--GL 296 (499)
T ss_pred HcCCCEEEEC-C---ccchhHHHHHHHHcCCeEEEEcCCCCchHHHHHHHHHHHHHCCCCcEE---EeCCCCcchH--HH
Confidence 8999987622 2 223556777788888776554322 2233434443332 43333 4999864433 24
Q ss_pred HHHHHHHHHHhhhcCCCCeEEE-ecCC-----------ChhcHHHHHHcCCcEEEEc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEV-DGGV-----------GPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~V-DGGI-----------~~e~i~~~~~aGAD~~VvG 254 (281)
++.|.+++.+....+ +++-+ -|.+ |.--...+.+.|++++=+=
T Consensus 297 ~~sL~~l~~~r~~~~--~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvh 351 (499)
T TIGR00284 297 LESIIRFRRASRLLN--VPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVV 351 (499)
T ss_pred HHHHHHHHHHHHhcC--CcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEc
Confidence 455555554432222 34311 2233 2222245677788866543
|
This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803. |
| >PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.0031 Score=56.62 Aligned_cols=80 Identities=19% Similarity=0.349 Sum_probs=53.5
Q ss_pred CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 174 PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 174 p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
...|++..+.|.. .+|.+.+.-.+.-..|. +..++-|+++.+.. ..+++|+|||+ .+.+..+.++||+-+
T Consensus 28 ~~dP~~~a~~~~~~g~~~l~ivDLdaa~~g~---~~n~~~i~~i~~~~-----~~~i~vgGGIrs~ed~~~ll~~Ga~~V 99 (229)
T PF00977_consen 28 SGDPVEVAKAFNEQGADELHIVDLDAAKEGR---GSNLELIKEIAKET-----GIPIQVGGGIRSIEDAERLLDAGADRV 99 (229)
T ss_dssp CCCHHHHHHHHHHTT-SEEEEEEHHHHCCTH---HHHHHHHHHHHHHS-----SSEEEEESSE-SHHHHHHHHHTT-SEE
T ss_pred CcCHHHHHHHHHHcCCCEEEEEEccCcccCc---hhHHHHHHHHHhcC-----CccEEEeCccCcHHHHHHHHHhCCCEE
Confidence 3457777766633 47777776554322332 33445556555543 36899999999 788999999999999
Q ss_pred EEcccccCCC
Q 023494 252 VAGSAVFGAK 261 (281)
Q Consensus 252 VvGSaIf~a~ 261 (281)
|+||+.+...
T Consensus 100 vigt~~~~~~ 109 (229)
T PF00977_consen 100 VIGTEALEDP 109 (229)
T ss_dssp EESHHHHHCC
T ss_pred EeChHHhhch
Confidence 9999988654
|
Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F .... |
| >cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.098 Score=48.37 Aligned_cols=137 Identities=20% Similarity=0.106 Sum_probs=83.3
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC-------cccccccCCHHHHHHcCcCCCCCeeEEEEec--Ch
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG-------RFVPNITIGPLVVDALRPVTDLPLDVHLMIV--EP 127 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG-------~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~--dp 127 (281)
...+.+||...+..++.+..+.++++|+|.|++-+.-- .|..+..+-.++++++|+.+++|+.+.|=.. +.
T Consensus 89 ~~p~ivsi~g~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~~~~~~~ 168 (296)
T cd04740 89 GTPVIASIAGSTVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLTPNVTDI 168 (296)
T ss_pred CCcEEEEEecCCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCcccccCCHHHHHHHHHHHHhccCCCEEEEeCCCchhH
Confidence 45688999988888889999999999999988864310 1111112233568888887788888764211 23
Q ss_pred hhHHHHHHHcCCCEEEEc---------cccc-----------ccc----cHHHHHHHHHHc-CCcEEEEECCCCCHHHHH
Q 023494 128 EQRVPDFIKAGADIVSVH---------CEQS-----------STI----HLHRTLNQIKDL-GAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh---------~Ea~-----------~~~----~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~ 182 (281)
.++.+.+.++|+|.++++ .+.. +.. ...+.++.+++. ++. -+...-=+..+.+.
T Consensus 169 ~~~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~ip-ii~~GGI~~~~da~ 247 (296)
T cd04740 169 VEIARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVEIP-IIGVGGIASGEDAL 247 (296)
T ss_pred HHHHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcCCC-EEEECCCCCHHHHH
Confidence 345667788999999874 2210 000 012556666653 332 22322224556666
Q ss_pred Hhhc-cCCEEEEE
Q 023494 183 CVLD-VVDLVLIM 194 (281)
Q Consensus 183 ~~l~-~vD~Ilvm 194 (281)
+++. .+|.|.+.
T Consensus 248 ~~l~~GAd~V~ig 260 (296)
T cd04740 248 EFLMAGASAVQVG 260 (296)
T ss_pred HHHHcCCCEEEEc
Confidence 6654 58988763
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. |
| >TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.11 Score=50.00 Aligned_cols=164 Identities=16% Similarity=0.133 Sum_probs=99.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+-.+.++.|.+.|+++|++ |. |..+ --.+.++.+.+. .+..+.++.. .+ .+.++.+.++|++.|.+..-.
T Consensus 23 ~k~~ia~~L~~~Gv~~IEv----G~--p~~~~~~~e~i~~i~~~~~~~~v~~~~r-~~-~~di~~a~~~g~~~i~i~~~~ 94 (363)
T TIGR02090 23 QKVEIARKLDELGVDVIEA----GF--PIASEGEFEAIKKISQEGLNAEICSLAR-AL-KKDIDKAIDCGVDSIHTFIAT 94 (363)
T ss_pred HHHHHHHHHHHcCCCEEEE----eC--CCCChHHHHHHHHHHhcCCCcEEEEEcc-cC-HHHHHHHHHcCcCEEEEEEcC
Confidence 3345567788899999887 43 2221 113445555543 2233443332 12 235888999999998884322
Q ss_pred c--------------ccccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccch
Q 023494 149 S--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~--------------~~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~ 207 (281)
. ..+.+.+.++.+|+.|+++.+.+. ..++.+.+.++... +|.|.+- -..|.....
T Consensus 95 Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~----DT~G~~~P~ 170 (363)
T TIGR02090 95 SPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIKVFKRAEEAGADRINIA----DTVGVLTPQ 170 (363)
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeecCCCCHHHHHHHHHHHHhCCCCEEEEe----CCCCccCHH
Confidence 1 013355788889999998877643 33566666665443 6766542 233444444
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
++.+.++.+++.. +++|++ |-|....|.-..+++||+.+
T Consensus 171 ~v~~li~~l~~~~-----~~~l~~H~Hnd~GlA~AN~laA~~aGa~~v 213 (363)
T TIGR02090 171 KMEELIKKLKENV-----KLPISVHCHNDFGLATANSIAGVKAGAEQV 213 (363)
T ss_pred HHHHHHHHHhccc-----CceEEEEecCCCChHHHHHHHHHHCCCCEE
Confidence 4555666665543 245665 77888888889999999975
|
Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. |
| >cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.11 Score=51.02 Aligned_cols=149 Identities=21% Similarity=0.307 Sum_probs=86.1
Q ss_pred HHHHHcCcC-C-CCCeeEEEEec--Chh---hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcE---------
Q 023494 105 LVVDALRPV-T-DLPLDVHLMIV--EPE---QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA--------- 168 (281)
Q Consensus 105 ~~I~~ir~~-t-~~~idaHLmv~--dp~---~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~--------- 168 (281)
+.|+++|+. + +.|+-+.|++. +|. .+++.+.+.|+..|.....-.... .+...|..|++.
T Consensus 55 ~~I~~ir~~lt~~~PfGVNL~~~~~~~~~e~~~v~l~le~gV~~ve~sa~~~~~p----~~~~~r~~G~~~~~~g~~~~~ 130 (418)
T cd04742 55 QAIERIQAALGNGEPYGVNLIHSPDEPELEEGLVDLFLRHGVRVVEASAFMQLTP----ALVRYRAKGLRRDADGRVQIA 130 (418)
T ss_pred HHHHHHHHhccCCCCeEEeeecCCCCchhHHHHHHHHHHcCCCEEEeccccCCCc----chhhHHhcCCccccccccccc
Confidence 345666763 6 78999999873 332 367788899999887764211111 123556666641
Q ss_pred --EEE-E-CCCC--------CHHHHHHhhc----------------cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHH
Q 023494 169 --GVV-L-NPAT--------SLSAIECVLD----------------VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 169 --Gla-i-~p~t--------~ie~~~~~l~----------------~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l 219 (281)
.+. + .|.. |-+.++.+.. .+|.|.+- .+.|- .|+.-....+..|.++++.
T Consensus 131 ~~ViakVsr~evAs~~f~ppp~~~v~~L~~~G~it~~eA~~A~~~g~aD~Ivvq-~EAGGH~g~~~~~~Llp~v~~l~d~ 209 (418)
T cd04742 131 NRIIAKVSRPEVAEAFMSPAPERILKKLLAEGKITEEQAELARRVPVADDITVE-ADSGGHTDNRPLSVLLPTIIRLRDE 209 (418)
T ss_pred ceEEEecCChhhhhhhcCCCCHHHHHHHHHcCCCCHHHHHHHHhCCCCCEEEEc-ccCCCCCCCccHHhHHHHHHHHHHH
Confidence 111 1 1100 1112222221 15888775 45432 2332222334556565554
Q ss_pred hh-hcCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 220 CL-EKGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 220 ~~-~~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+. +.++ .++|...|||. .+.+......|||.+.+||...
T Consensus 210 v~~~~~~~~~ipViAAGGI~tg~~vaAA~alGAd~V~~GT~fl 252 (418)
T cd04742 210 LAARYGYRRPIRVGAAGGIGTPEAAAAAFALGADFIVTGSINQ 252 (418)
T ss_pred HhhccccCCCceEEEECCCCCHHHHHHHHHcCCcEEeeccHHH
Confidence 42 1111 47899999996 8899999999999999998865
|
NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.051 Score=47.99 Aligned_cols=137 Identities=22% Similarity=0.255 Sum_probs=89.3
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEee--------e---CcccccccCCHHHHHHcCcCCCCCeeEEEE
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVM--------D---GRFVPNITIGPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDIm--------D---G~fvpn~~~G~~~I~~ir~~t~~~idaHLm 123 (281)
.....+.++|...|+.++.+..+.+.++|.|.|++-.- | |....+..+-.++++++|+..+.++.+.+-
T Consensus 52 ~~~~p~~~qi~g~~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r 131 (231)
T cd02801 52 PEERPLIVQLGGSDPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIR 131 (231)
T ss_pred ccCCCEEEEEcCCCHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEe
Confidence 34567999999999999999999999999998766421 1 111223445567788888766667777554
Q ss_pred ec-----ChhhHHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc--cCCE
Q 023494 124 IV-----EPEQRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--VVDL 190 (281)
Q Consensus 124 v~-----dp~~~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~--~vD~ 190 (281)
.. +..++++.+.++|+|++++|.-.. ...++ +.++.+++. .++-+..+-+ +..+.+.+++. .+|.
T Consensus 132 ~~~~~~~~~~~~~~~l~~~Gvd~i~v~~~~~~~~~~~~~~~-~~~~~i~~~-~~ipvi~~Ggi~~~~d~~~~l~~~gad~ 209 (231)
T cd02801 132 LGWDDEEETLELAKALEDAGASALTVHGRTREQRYSGPADW-DYIAEIKEA-VSIPVIANGDIFSLEDALRCLEQTGVDG 209 (231)
T ss_pred eccCCchHHHHHHHHHHHhCCCEEEECCCCHHHcCCCCCCH-HHHHHHHhC-CCCeEEEeCCCCCHHHHHHHHHhcCCCE
Confidence 32 233567778899999999997421 01122 455666664 2333444433 45667777766 3888
Q ss_pred EEE
Q 023494 191 VLI 193 (281)
Q Consensus 191 Ilv 193 (281)
|.+
T Consensus 210 V~i 212 (231)
T cd02801 210 VMI 212 (231)
T ss_pred EEE
Confidence 876
|
Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present. |
| >cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.0092 Score=53.70 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=57.1
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|++..+.|.+. +|.+.+.-.+. ..|..-. ++-|+++.+.. ..+++++|||+ .|++..++.+||+-+|
T Consensus 35 ~dp~~~a~~~~~~g~~~l~i~DLd~-~~~~~~n---~~~i~~i~~~~-----~~~v~vgGGir~~edv~~~l~~Ga~~vi 105 (233)
T cd04723 35 SDPLDVARAYKELGFRGLYIADLDA-IMGRGDN---DEAIRELAAAW-----PLGLWVDGGIRSLENAQEWLKRGASRVI 105 (233)
T ss_pred CCHHHHHHHHHHCCCCEEEEEeCcc-ccCCCcc---HHHHHHHHHhC-----CCCEEEecCcCCHHHHHHHHHcCCCeEE
Confidence 4577777666553 77777665552 2232222 33444444432 36899999999 6999999999999999
Q ss_pred EcccccCCCCHHHHHHHH
Q 023494 253 AGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 253 vGSaIf~a~dp~~~~~~l 270 (281)
+||.-++.+-.++.++++
T Consensus 106 igt~~~~~~~~~~~~~~~ 123 (233)
T cd04723 106 VGTETLPSDDDEDRLAAL 123 (233)
T ss_pred EcceeccchHHHHHHHhc
Confidence 999988652223444444
|
The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl |
| >COG1954 GlpP Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription] | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.048 Score=47.02 Aligned_cols=158 Identities=22% Similarity=0.314 Sum_probs=98.1
Q ss_pred chhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCC-eEEEEeeeCcccccccCCHHHHHHcCcCCCCCe
Q 023494 40 IQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCD-WIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118 (281)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d-~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~i 118 (281)
+-|-+++.+..|.+=+.+..+. ++|-.+..++.+-++.+.+.|-. ++|+|..+| ..|-.++.+++++
T Consensus 6 iipAv~~~~~le~~les~~~~v-flL~~~i~~ik~ivk~lK~~gK~vfiHvDLv~G--l~~~e~~i~fi~~--------- 73 (181)
T COG1954 6 IIPAVRDNKDLEKALESESQYV-FLLTGHILNIKEIVKKLKNRGKTVFIHVDLVEG--LSNDEVAIEFIKE--------- 73 (181)
T ss_pred chHHHhhHHHHHHHhcCCCeEE-EEEechhhhHHHHHHHHHhCCcEEEEEeHHhcc--cCCchHHHHHHHH---------
Confidence 3445555666666666555443 56778999999999999887743 589998888 3444444444432
Q ss_pred eEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc--cCCEEEEE
Q 023494 119 DVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIM 194 (281)
Q Consensus 119 daHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~--~vD~Ilvm 194 (281)
+.++|+|. + +-...+..+|++|+.+.- .+-.+..++.....+. .+|.|-+|
T Consensus 74 -----------------~~~pdGII------S--Tk~~~i~~Akk~~~~aIqR~FilDS~Al~~~~~~i~~~~pD~iEvL 128 (181)
T COG1954 74 -----------------VIKPDGII------S--TKSNVIKKAKKLGILAIQRLFILDSIALEKGIKQIEKSEPDFIEVL 128 (181)
T ss_pred -----------------hccCCeeE------E--ccHHHHHHHHHcCCceeeeeeeecHHHHHHHHHHHHHcCCCEEEEc
Confidence 12355553 1 123467788888887753 3333345555444444 48999776
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-C-hhcHHHHHHcCCcEE
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-G-PKNAYKVIEAGANAL 251 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~-~e~i~~~~~aGAD~~ 251 (281)
|| ..|..+++|. +. .+.+| +.||. . .|.+.+.+++||-.+
T Consensus 129 ---PG-----v~Pkvi~~i~---~~-----t~~pi-IAGGLi~t~Eev~~Al~aGA~av 170 (181)
T COG1954 129 ---PG-----VMPKVIKEIT---EK-----THIPI-IAGGLIETEEEVREALKAGAVAV 170 (181)
T ss_pred ---Cc-----ccHHHHHHHH---Hh-----cCCCE-EeccccccHHHHHHHHHhCcEEE
Confidence 76 4555554443 22 34677 56665 4 779999999998655
|
|
| >TIGR01919 hisA-trpF 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase/N-(5'phosphoribosyl)anthranilate isomerase | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.0095 Score=54.13 Aligned_cols=36 Identities=17% Similarity=0.188 Sum_probs=32.3
Q ss_pred CeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 227 PWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 227 ~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
.+++|+|||+ .+.+..+.++|||-+|+||..++.++
T Consensus 75 ~~v~vgGGIrs~e~~~~~l~~Ga~~vvigT~a~~~p~ 111 (243)
T TIGR01919 75 VVEELSGGRRDDSSLRAALTGGRARVNGGTAALENPW 111 (243)
T ss_pred CCEEEcCCCCCHHHHHHHHHcCCCEEEECchhhCCHH
Confidence 5899999999 88999999999999999999886443
|
This model represents a bifunctional protein posessing both hisA (1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase) and trpF (N-(5'phosphoribosyl)anthranilate isomerase) activities. Thus, it is involved in both the histidine and tryptophan biosynthetic pathways. Enzymes with this property have been described only in the Actinobacteria (High-GC gram-positive). The enzyme is closely related to the monofunctional HisA proteins (TIGR00007) and in Actinobacteria, the classical monofunctional TrpF is generally absent. |
| >PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.009 Score=51.79 Aligned_cols=140 Identities=25% Similarity=0.377 Sum_probs=82.4
Q ss_pred EEEeccCccCHHHHHHHHHHcCC-CeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGC-DWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD 140 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~-d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd 140 (281)
-.++..|..+|.+.++.+.+.|- =++|+|..+| ++-....++.|++.. ++|
T Consensus 23 vfLl~g~I~~l~~~v~~~~~~gK~vfVHiDli~G-----l~~D~~~i~~L~~~~-----------------------~~d 74 (175)
T PF04309_consen 23 VFLLTGDIGNLKDIVKRLKAAGKKVFVHIDLIEG-----LSRDEAGIEYLKEYG-----------------------KPD 74 (175)
T ss_dssp EEE-SEECCCHHHHHHHHHHTT-EEEEECCGEET-----B-SSHHHHHHHHHTT-------------------------S
T ss_pred EEEEcCcHHHHHHHHHHHHHcCCEEEEEehhcCC-----CCCCHHHHHHHHHcC-----------------------CCc
Confidence 45777999999999999998873 3589999998 333334444443321 256
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|. ++ -...++.+|+.|+.... .+-.+..++.-.+.+. .+|+|-+| || ..|..++++
T Consensus 75 GII------ST--k~~~i~~Ak~~gl~tIqRiFliDS~al~~~~~~i~~~~PD~vEil---Pg-----~~p~vi~~i--- 135 (175)
T PF04309_consen 75 GII------ST--KSNLIKRAKKLGLLTIQRIFLIDSSALETGIKQIEQSKPDAVEIL---PG-----VMPKVIKKI--- 135 (175)
T ss_dssp EEE------ES--SHHHHHHHHHTT-EEEEEEE-SSHHHHHHHHHHHHHHT-SEEEEE---SC-----CHHHHHCCC---
T ss_pred EEE------eC--CHHHHHHHHHcCCEEEEEeeeecHHHHHHHHHHHhhcCCCEEEEc---hH-----HHHHHHHHH---
Confidence 553 11 23467888888877653 3333334444444443 48999988 66 334443332
Q ss_pred HHHhhhcCCCCeEEEecCC-C-hhcHHHHHHcCCcEEEEc
Q 023494 217 RRMCLEKGVNPWIEVDGGV-G-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI-~-~e~i~~~~~aGAD~~VvG 254 (281)
++ ..+++| +.||. . .|.+.+++++||+.+-..
T Consensus 136 ~~-----~~~~Pi-IAGGLI~~~e~v~~al~aGa~aVSTS 169 (175)
T PF04309_consen 136 RE-----ETNIPI-IAGGLIRTKEDVEEALKAGADAVSTS 169 (175)
T ss_dssp CC-----CCSS-E-EEESS--SHHHHHHHCCTTCEEEEE-
T ss_pred HH-----hcCCCE-EeecccCCHHHHHHHHHcCCEEEEcC
Confidence 22 235677 45554 4 889999999999987654
|
Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G. |
| >cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF) | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.009 Score=53.71 Aligned_cols=77 Identities=16% Similarity=0.259 Sum_probs=50.5
Q ss_pred CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 177 SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 177 ~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
+.+.++.+.+. +|.+.+..+.....++ +..++-++++++.. ++++.++|||+ .+.+..+.+.|+|.+++|
T Consensus 29 ~~~~a~~~~~~G~~~i~i~d~~~~~~~~---~~~~~~i~~i~~~~-----~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 29 PVELAKRYNEQGADELVFLDITASSEGR---ETMLDVVERVAEEV-----FIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred HHHHHHHHHHCCCCEEEEEcCCcccccC---cccHHHHHHHHHhC-----CCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 44444443332 5666655554322222 22344555555543 36899999999 789999999999999999
Q ss_pred ccccCCC
Q 023494 255 SAVFGAK 261 (281)
Q Consensus 255 SaIf~a~ 261 (281)
++++..+
T Consensus 101 ~~~~~~p 107 (243)
T cd04731 101 SAAVENP 107 (243)
T ss_pred chhhhCh
Confidence 9999744
|
Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria. |
| >PRK07188 nicotinate phosphoribosyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.033 Score=53.40 Aligned_cols=51 Identities=22% Similarity=0.227 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhhcC-CCCeEEEecCCChhcHHHHHHcC--CcEEEEcccccCC
Q 023494 210 VKKISDLRRMCLEKG-VNPWIEVDGGVGPKNAYKVIEAG--ANALVAGSAVFGA 260 (281)
Q Consensus 210 l~kI~~lr~l~~~~~-~~~~I~VDGGI~~e~i~~~~~aG--AD~~VvGSaIf~a 260 (281)
.+.++++|+.+++.+ .++.|.+.||||++++.++.++| +|++=||+.|.+.
T Consensus 263 ~~l~~~vr~~Ld~~g~~~vkI~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~ 316 (352)
T PRK07188 263 PELIKALRKALDENGGKHVKIIVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKI 316 (352)
T ss_pred HHHHHHHHHHHhhCCCCCcEEEEeCCCCHHHHHHHHHcCCCccEEecCcccccC
Confidence 344566677777766 67889999999999999999999 7999999999874
|
|
| >COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.063 Score=47.49 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=99.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
|+.++. +.+.+.|++.+ -|.|-.++.-..-..++++++....+..+|+ =+.|-+.+-..+.. ++...+..|
T Consensus 37 dP~eia---~~lr~rgar~v--YiADLdaI~g~g~n~d~i~~l~~~~~~ivD~--Gv~dL~s~~~~l~~--~~~~vv~TE 107 (229)
T COG1411 37 DPLEIA---EALRERGARFV--YIADLDAILGGGDNADTIRELSSLEKVIVDV--GVRDLESHAHRLIP--AETAVVGTE 107 (229)
T ss_pred ChHHHH---HHHhhccCceE--EeeehHHHhcCCCcHHHHHHHHhhhhheeec--ccccccCHHHhcCC--Ccceeeccc
Confidence 555554 45566788875 5666555544445678888886654444444 44554444333333 455556666
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEEC------CC--CCHHHHHHhh--ccCCEEEEEeecCCCCCCc-cchhHHHHHHHH
Q 023494 148 QSSTIHLHRTLNQIKDLGAKAGVVLN------PA--TSLSAIECVL--DVVDLVLIMSVNPGFGGQS-FIESQVKKISDL 216 (281)
Q Consensus 148 a~~~~~i~~~l~~ik~~G~k~Glai~------p~--t~ie~~~~~l--~~vD~IlvmsV~pG~~GQ~-f~~~~l~kI~~l 216 (281)
.. +..+.-++.-+-+++.++ +. ..+|..+.+. +..+.|.+ .+.. .+-|+ |.++.+.++..+
T Consensus 108 t~------e~~e~~e~~r~vvslD~k~~~Ll~~~~ed~le~Vk~l~~~~~~~lIvL-Di~a-VGt~~G~~~E~l~~~~~~ 179 (229)
T COG1411 108 TL------EDTEEDEEGRIVVSLDVKGGELLGPWLEDFLETVKDLNYRRDPGLIVL-DIGA-VGTKSGPDYELLTKVLEL 179 (229)
T ss_pred hh------hhhhhhhccceEEEEecCCCeecCCCchhHHHHHHHHhccCCCCeEEE-Eccc-cccccCCCHHHHHHHHHh
Confidence 32 122333332344555543 22 2223333321 23455543 3321 12233 777777666543
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~ 267 (281)
.. -++.+.|||. +|.+..+...|++.+.+|++|++-..|-+..
T Consensus 180 s~--------~pVllGGGV~g~Edlel~~~~Gv~gvLvaTalh~G~vple~~ 223 (229)
T COG1411 180 SE--------HPVLLGGGVGGMEDLELLLGMGVSGVLVATALHEGVVPLEVE 223 (229)
T ss_pred cc--------CceeecCCcCcHHHHHHHhcCCCceeeehhhhhcCcCcHHHH
Confidence 21 2677999999 8888888889999999999999887776544
|
|
| >PRK15108 biotin synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.5 Score=45.10 Aligned_cols=197 Identities=15% Similarity=0.192 Sum_probs=110.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccc---cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVP---NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp---n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
++..+.+..+.+.+.|++.+++- .-|. -| .+.+=.++++.+|+. +..+.+.+-..+ .+.++.+.++|+|.+.+
T Consensus 77 s~eEI~~~a~~~~~~G~~~i~i~-~~g~-~p~~~~~e~i~~~i~~ik~~-~i~v~~s~G~ls-~e~l~~LkeAGld~~n~ 152 (345)
T PRK15108 77 EVEQVLESARKAKAAGSTRFCMG-AAWK-NPHERDMPYLEQMVQGVKAM-GLETCMTLGTLS-ESQAQRLANAGLDYYNH 152 (345)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEE-ecCC-CCCcchHHHHHHHHHHHHhC-CCEEEEeCCcCC-HHHHHHHHHcCCCEEee
Confidence 33455555566667899988662 1111 12 234445667777753 344434333333 45778899999999888
Q ss_pred ccccc-----------ccccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc-------cCCEEEEEeec--CCCC-
Q 023494 145 HCEQS-----------STIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD-------VVDLVLIMSVN--PGFG- 201 (281)
Q Consensus 145 h~Ea~-----------~~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~-------~vD~IlvmsV~--pG~~- 201 (281)
-.|+. +.++.-++++.+++.|++++ +.+......++..+.+. .++.|-+.-.. ||..
T Consensus 153 ~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgEt~ed~v~~~~~l~~l~~~~~~ip~~~~~P~~gTpl 232 (345)
T PRK15108 153 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPL 232 (345)
T ss_pred ccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCCCHHHHHHHHHHHHhccCCCCEEEeCCccCCCCCCC
Confidence 66642 11234467777778898775 45555544433333221 24566554343 3542
Q ss_pred -CCc-cc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEccc-ccCCC-CHHHHHHHHHH
Q 023494 202 -GQS-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGSA-VFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 202 -GQ~-f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGSa-If~a~-dp~~~~~~l~~ 272 (281)
+.+ .. .+.+..|.-.|=++++ ..|-+.||-. .+.-.....+|||.+++|-. +.... ++++-.+-+++
T Consensus 233 ~~~~~~~~~e~lr~iAi~Rl~lp~----~~i~i~~g~~~~~~~~~~~~l~~Gan~~~~g~~~ltt~g~~~~~~~~~i~~ 307 (345)
T PRK15108 233 ADNDDVDAFDFIRTIAVARIMMPT----SYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRK 307 (345)
T ss_pred CCCCCCCHHHHHHHHHHHHHHCCC----ceeeecccHhHhChhhHHHHHHcCCcEEEECCccccCCCCCHHHHHHHHHH
Confidence 221 12 2335556655655543 3466677762 44567889999999999986 44433 44444444443
|
|
| >PRK12581 oxaloacetate decarboxylase; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.22 Score=49.46 Aligned_cols=172 Identities=16% Similarity=0.190 Sum_probs=107.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-cccccc---cC-CHHHHHHcCcC-CCCCeeEEEEecC-------hh----hHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPNI---TI-GPLVVDALRPV-TDLPLDVHLMIVE-------PE----QRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~---~~-G~~~I~~ir~~-t~~~idaHLmv~d-------p~----~~i~~ 133 (281)
++......+.++|...+++- =| +|--.+ .. -.+.++.+|+. ++.++-..+--.| |. .|++.
T Consensus 36 d~l~ia~~ld~~G~~siE~w--GGAtfd~~~rfl~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~ 113 (468)
T PRK12581 36 DMLPVLTILDKIGYYSLECW--GGATFDACIRFLNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISL 113 (468)
T ss_pred HHHHHHHHHHhcCCCEEEec--CCcchhhhhcccCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHH
Confidence 34445556667788887764 22 222111 22 24557888775 6677776555433 22 35777
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE----ECCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV----LNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla----i~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~ 204 (281)
+.+.|.|.+-+-......+.+...++.+|+.|..+.++ .+|...++.+.++.+ .+|.|.+- -..|..
T Consensus 114 a~~~Gidi~Rifd~lnd~~n~~~ai~~ak~~G~~~~~~i~yt~sp~~t~~y~~~~a~~l~~~Gad~I~Ik----DtaG~l 189 (468)
T PRK12581 114 SAQNGIDVFRIFDALNDPRNIQQALRAVKKTGKEAQLCIAYTTSPVHTLNYYLSLVKELVEMGADSICIK----DMAGIL 189 (468)
T ss_pred HHHCCCCEEEEcccCCCHHHHHHHHHHHHHcCCEEEEEEEEEeCCcCcHHHHHHHHHHHHHcCCCEEEEC----CCCCCc
Confidence 88999998877654323567889999999999986544 455554544444433 26777552 334544
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
....+.+.++.+++. .+++|.+ +-|....|.-..+++|||++=+
T Consensus 190 ~P~~v~~Lv~alk~~-----~~~pi~~H~Hnt~GlA~An~laAieAGad~vD~ 237 (468)
T PRK12581 190 TPKAAKELVSGIKAM-----TNLPLIVHTHATSGISQMTYLAAVEAGADRIDT 237 (468)
T ss_pred CHHHHHHHHHHHHhc-----cCCeEEEEeCCCCccHHHHHHHHHHcCCCEEEe
Confidence 444555666666653 2356766 7788888999999999997643
|
|
| >PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=96.41 E-value=0.18 Score=47.01 Aligned_cols=188 Identities=12% Similarity=0.167 Sum_probs=117.8
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcc--cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~f--vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..=+.|+..+.-.++.+++.+...| +.+-.|++ .+ +.+=..+++.+.+..+.|+-+||==......+..++++|.
T Consensus 21 ~AfN~~n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~-~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GF 98 (286)
T PRK12738 21 PAFNIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIA-LEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_pred EEEEeCCHHHHHHHHHHHHHHCCCEE-EEcCcchhhhCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence 33333445555566778888888765 55555532 11 1111123444444457899999966544557888999998
Q ss_pred CEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------ECC----CCCHHHHHHhhc--cCCEEEE--Ee
Q 023494 140 DIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LNP----ATSLSAIECVLD--VVDLVLI--MS 195 (281)
Q Consensus 140 d~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~p----~t~ie~~~~~l~--~vD~Ilv--ms 195 (281)
+.|-+=.-..+. ..-+++.+.++..|+-+ |-. ... -|..+...++.+ .+|.+.+ .+
T Consensus 99 tSVM~DgS~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt 178 (286)
T PRK12738 99 RSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGT 178 (286)
T ss_pred CeEeecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHHHhCCCEEEeccCc
Confidence 777665433221 22457778888888654 221 111 356677778776 4897654 34
Q ss_pred ecCCCCCCccchh-HHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 196 VNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 196 V~pG~~GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+|--+.+ .|. .+++|+++++.. ++++..=|| +..+.++++++.|..-+=+++.+..
T Consensus 179 ~HG~Y~~---~p~Ldfd~l~~I~~~~-----~vPLVLHGgSG~~~e~~~kai~~GI~KiNi~T~l~~ 237 (286)
T PRK12738 179 AHGLYSK---TPKIDFQRLAEIREVV-----DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKI 237 (286)
T ss_pred ccCCCCC---CCcCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 4422222 122 277888887765 368888775 4478999999999999999998864
|
|
| >PLN02411 12-oxophytodienoate reductase | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.072 Score=51.69 Aligned_cols=129 Identities=19% Similarity=0.304 Sum_probs=77.5
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-CC-cEEEEECCCCC---------H
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-GA-KAGVVLNPATS---------L 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G~-k~Glai~p~t~---------i 178 (281)
+.++|.|+|-+|+... + .+ -+.++++++|+. |- .+|+=++|... +
T Consensus 174 A~~AGFDGVEIH~AhGYLl~QFLSp~tN~RtDeYGGSlENR~RF~lEIi~aVr~~vg~d~vgvRiS~~~~~~~~~~~~~~ 253 (391)
T PLN02411 174 AIRAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSIENRCRFLMQVVQAVVSAIGADRVGVRVSPAIDHLDATDSDPL 253 (391)
T ss_pred HHHcCCCEEEEccccchHHHHhCCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCeEEEEEcccccccCCCCCcch
Confidence 4679999999996421 0 00 155788888875 42 37887887321 1
Q ss_pred H---HHHHhhc--------cCCEEEEEeecC-CCCC---Cccch--hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHH
Q 023494 179 S---AIECVLD--------VVDLVLIMSVNP-GFGG---QSFIE--SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241 (281)
Q Consensus 179 e---~~~~~l~--------~vD~IlvmsV~p-G~~G---Q~f~~--~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~ 241 (281)
+ .+.+.+. .+|+|-+..-.. .+.. ....+ ......+++|+.. +.++.+-||++++...
T Consensus 254 ~~~~~~~~~l~~~~~~~g~~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~a~~ik~~v-----~~pvi~~G~i~~~~a~ 328 (391)
T PLN02411 254 NLGLAVVERLNKLQLQNGSKLAYLHVTQPRYTAYGQTESGRHGSEEEEAQLMRTLRRAY-----QGTFMCSGGFTRELGM 328 (391)
T ss_pred hhHHHHHHHHHHHHhhcCCCeEEEEecCCcccccCCCcccccCCccchhHHHHHHHHHc-----CCCEEEECCCCHHHHH
Confidence 1 1222222 278887643211 0110 01101 1112234455543 3578899999999999
Q ss_pred HHHHcC-CcEEEEcccccCCCCHHHHH
Q 023494 242 KVIEAG-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 242 ~~~~aG-AD~~VvGSaIf~a~dp~~~~ 267 (281)
++++.| ||.+.+|++++..+|....+
T Consensus 329 ~~l~~g~aDlV~~gR~~iadPdl~~k~ 355 (391)
T PLN02411 329 QAVQQGDADLVSYGRLFISNPDLVLRF 355 (391)
T ss_pred HHHHcCCCCEEEECHHHHhCccHHHHH
Confidence 999999 99999999999877765444
|
|
| >PRK07259 dihydroorotate dehydrogenase 1B; Reviewed | Back alignment and domain information |
|---|
Probab=96.33 E-value=0.11 Score=48.20 Aligned_cols=161 Identities=18% Similarity=0.142 Sum_probs=95.0
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcC-CCeEEEEee-----eCc--ccccccCCHHHHHHcCcCCCCCeeEEEEe--cC
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAG-CDWIHVDVM-----DGR--FVPNITIGPLVVDALRPVTDLPLDVHLMI--VE 126 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G-~d~iHiDIm-----DG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~d 126 (281)
...+.+||..-+..++.+..+.++++| +|.|++-+. .|. +-.+..+-.++++++|+.+++|+.+.|-. .+
T Consensus 91 ~~p~i~si~g~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~~~ 170 (301)
T PRK07259 91 DTPIIANVAGSTEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPELAYEVVKAVKEVVKVPVIVKLTPNVTD 170 (301)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEEcCCCchh
Confidence 456889999989889999999999998 999988541 111 11112334667788888778888886642 23
Q ss_pred hhhHHHHHHHcCCCEEEEcc---------ccc-----------c----cccHHHHHHHHHHc-CCcEEEEECCCCCHHHH
Q 023494 127 PEQRVPDFIKAGADIVSVHC---------EQS-----------S----TIHLHRTLNQIKDL-GAKAGVVLNPATSLSAI 181 (281)
Q Consensus 127 p~~~i~~~~~aGAd~Itvh~---------Ea~-----------~----~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~ 181 (281)
...+.+.+.++|+|.++++- +.. + .....+.+..+++. ++. -+...-=+..+.+
T Consensus 171 ~~~~a~~l~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~p~~l~~v~~i~~~~~ip-vi~~GGI~~~~da 249 (301)
T PRK07259 171 IVEIAKAAEEAGADGLSLINTLKGMAIDIKTRKPILANVTGGLSGPAIKPIALRMVYQVYQAVDIP-IIGMGGISSAEDA 249 (301)
T ss_pred HHHHHHHHHHcCCCEEEEEccccccccccccCceeecCCcCccCCcCcccccHHHHHHHHHhCCCC-EEEECCCCCHHHH
Confidence 34456778899999998731 100 0 00123566666664 332 3333333455666
Q ss_pred HHhh-ccCCEEEEEeecCCCCCCccchhHHHHHH-HHHHHhhhcC
Q 023494 182 ECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKIS-DLRRMCLEKG 224 (281)
Q Consensus 182 ~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~-~lr~l~~~~~ 224 (281)
.+++ ..+|.|.+.+.. -..|..+.+++ .+.+++.++|
T Consensus 250 ~~~l~aGAd~V~igr~l------l~~P~~~~~i~~~l~~~~~~~g 288 (301)
T PRK07259 250 IEFIMAGASAVQVGTAN------FYDPYAFPKIIEGLEAYLDKYG 288 (301)
T ss_pred HHHHHcCCCceeEcHHH------hcCcHHHHHHHHHHHHHHHHcC
Confidence 6655 358988763221 11355555544 3344444443
|
|
| >PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional | Back alignment and domain information |
|---|
Probab=96.32 E-value=0.19 Score=49.79 Aligned_cols=182 Identities=18% Similarity=0.185 Sum_probs=99.8
Q ss_pred CceEeEEEeccCcc---CHHHHHHHH-----HHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecCh
Q 023494 57 DIIVSPSILSANFA---KLGEQVKAV-----ELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEP 127 (281)
Q Consensus 57 ~~~i~pSila~D~~---~l~~~l~~l-----~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp 127 (281)
...|..-| .|.. .+.+.++.+ ...| +.+..|+.|-++.+.- .--...|+.+++.++.|+.+ .+.||
T Consensus 91 p~~Ia~eI--~D~l~~e~i~~r~~~~~~~~~~rvG-~~~~AD~IaL~~~s~dp~~v~~~Vk~V~~~~dvPLSI--DT~dp 165 (450)
T PRK04165 91 PTGIAVDV--SDTMDDEEIDARLKKINNFQFERVG-EILKLDMVALRNASGDPEKFAKAVKKVAETTDLPLIL--CSEDP 165 (450)
T ss_pred CCEEEEEE--eCCCChHHHHHHHHHhhcchHhhhc-ccccCCEEEEeCCCCCHHHHHHHHHHHHHhcCCCEEE--eCCCH
Confidence 45666666 3433 233333444 3445 2223455554444431 11135667776656778765 56787
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc------CCEEEEEeecCCCC
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMSVNPGFG 201 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~------vD~IlvmsV~pG~~ 201 (281)
. .++...++|+|..-+-.-. ..+++.+..+.++++|..+.+ ..++ ++.++++... .|.|+ +||++
T Consensus 166 e-vleaAleagad~~plI~Sa-t~dN~~~m~~la~~yg~pvVv-~~~d--l~~L~~lv~~~~~~GI~dIIL----DPg~g 236 (450)
T PRK04165 166 A-VLKAALEVVADRKPLLYAA-TKENYEEMAELAKEYNCPLVV-KAPN--LEELKELVEKLQAAGIKDLVL----DPGTE 236 (450)
T ss_pred H-HHHHHHHhcCCCCceEEec-CcchHHHHHHHHHHcCCcEEE-Echh--HHHHHHHHHHHHHcCCCcEEE----CCCCc
Confidence 7 6677888898843222222 134677888889999987766 3332 5555554432 24443 89886
Q ss_pred CCccchhHHHHHHHHHHH---hhhcCCCCeEEEecC------CChh--cHHHHHHcCCcEEEEcc
Q 023494 202 GQSFIESQVKKISDLRRM---CLEKGVNPWIEVDGG------VGPK--NAYKVIEAGANALVAGS 255 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l---~~~~~~~~~I~VDGG------I~~e--~i~~~~~aGAD~~VvGS 255 (281)
| | .+++++..++|+. -..+.+++++-+.-+ +-.| ++..++..|+|++|+-+
T Consensus 237 g--f-~ksl~~~~~iRr~Al~~~~~~lgyPil~~~s~k~~~~~~~E~~~As~~~~kya~i~Vl~~ 298 (450)
T PRK04165 237 N--I-KETLDDFVQIRRAAIKKGDRPLGYPIIAFPIEAWMSDPMKEAAIASTLIAKYADILVLHD 298 (450)
T ss_pred h--h-hhhHHHHHHHHhhhhhcccccCCCCEEEcchhhcccchHHHHHHHHHHHHhCCcEEEEcC
Confidence 4 2 2333445555555 222345667644222 1122 44567889999999874
|
|
| >PRK09389 (R)-citramalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.16 Score=50.75 Aligned_cols=184 Identities=15% Similarity=0.149 Sum_probs=107.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.-.+..+.|.+.|+|.|++ |.++-+ .-..+.++.+.+. .+..+.++.... .+.++.+.++|++.|++..-..
T Consensus 25 ~K~~ia~~L~~~Gv~~IE~----G~p~~~-~~d~e~v~~i~~~~~~~~i~a~~r~~--~~di~~a~~~g~~~v~i~~~~S 97 (488)
T PRK09389 25 EKLEIARKLDELGVDVIEA----GSAITS-EGEREAIKAVTDEGLNAEICSFARAV--KVDIDAALECDVDSVHLVVPTS 97 (488)
T ss_pred HHHHHHHHHHHcCCCEEEE----eCCcCC-HHHHHHHHHHHhcCCCcEEEeecccC--HHHHHHHHhCCcCEEEEEEccC
Confidence 3345566788899988887 432211 1123556666543 222333322211 3458888999999988775432
Q ss_pred cc--------------ccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchh
Q 023494 150 ST--------------IHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 150 ~~--------------~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
+. +.+.+.++.+|+.|.++-+... ..++.+.+.+++.. +|.|.+ |-..|-....+
T Consensus 98 d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~i~l----~DTvG~~~P~~ 173 (488)
T PRK09389 98 DLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELSGEDASRADLDFLKELYKAGIEAGADRICF----CDTVGILTPEK 173 (488)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeeCCCCCHHHHHHHHHHHHhCCCCEEEE----ecCCCCcCHHH
Confidence 11 2355667888999988766443 33566666555432 677654 33344333344
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHHH
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIKT 272 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~~ 272 (281)
..+.++.+++.. +++|++ |-|....|.-..+++||+.+ =+.|++ +.+.++.+..|+.
T Consensus 174 ~~~lv~~l~~~~-----~v~l~~H~HND~GlAvANalaAv~aGa~~V--d~Ti~GiGERaGNa~lE~lv~~L~~ 240 (488)
T PRK09389 174 TYELFKRLSELV-----KGPVSIHCHNDFGLAVANTLAALAAGADQV--HVTINGIGERAGNASLEEVVMALKH 240 (488)
T ss_pred HHHHHHHHHhhc-----CCeEEEEecCCccHHHHHHHHHHHcCCCEE--EEEcccccccccCccHHHHHHHHHh
Confidence 455566665532 356766 77888888889999999964 333432 3455555555543
|
|
| >PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.21 Score=50.42 Aligned_cols=188 Identities=13% Similarity=0.202 Sum_probs=110.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcC--CCCCeeEEEEecCh------hhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPV--TDLPLDVHLMIVEP------EQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~--t~~~idaHLmv~dp------~~~i~~~~~a 137 (281)
++...-.+..+.|.+.|+|.|++ | | |..+. ..+.++.|++. .+..+.+.-+...+ .+-++.+.++
T Consensus 24 ~s~e~Kl~ia~~L~~~Gvd~IEv----G-~-p~as~~d~~~~~~i~~~~l~~~~i~~~~~~~~~~i~~~~d~~~e~~~~~ 97 (524)
T PRK12344 24 FSVEDKLRIARKLDELGVDYIEG----G-W-PGSNPKDTEFFKRAKELKLKHAKLAAFGSTRRAGVSAEEDPNLQALLDA 97 (524)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE----c-C-CcCChhHHHHHHHHHHhCCCCcEEEEEeeccccCCCcccHHHHHHHHhC
Confidence 33334445667788999998887 3 3 32222 23445555431 23344443333222 2346778899
Q ss_pred CCCEEEEccccc--------------ccccHHHHHHHHHHcCCcEEEEEC-----CCCCHHHHHHhhc-----cCCEEEE
Q 023494 138 GADIVSVHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----PATSLSAIECVLD-----VVDLVLI 193 (281)
Q Consensus 138 GAd~Itvh~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p~t~ie~~~~~l~-----~vD~Ilv 193 (281)
|++.|++-.-+. ..+.+.+.++.+|++|.++-+... ..++.+.+.++.. .+|.|.+
T Consensus 98 g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~~e~~~Da~r~d~~~l~~~~~~~~~~Gad~i~l 177 (524)
T PRK12344 98 GTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVIFDAEHFFDGYKANPEYALATLKAAAEAGADWVVL 177 (524)
T ss_pred CCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEccccccccccCCHHHHHHHHHHHHhCCCCeEEE
Confidence 999988864321 012355778889999998765322 2356665555543 2677654
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCH
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDY 263 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp 263 (281)
|-..|.....++.+.++.+++.+ +.+|++ |-|....|.-..+++|||.+ =+.|++ +.+.
T Consensus 178 ----~DTvG~~~P~~v~~li~~l~~~~-----~v~i~~H~HND~GlA~ANslaAi~aGa~~V--d~Tl~GlGERaGNa~l 246 (524)
T PRK12344 178 ----CDTNGGTLPHEVAEIVAEVRAAP-----GVPLGIHAHNDSGCAVANSLAAVEAGARQV--QGTINGYGERCGNANL 246 (524)
T ss_pred ----ccCCCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCChHHHHHHHHHHhCCCEE--EEecccccccccCcCH
Confidence 34445444445566677776654 356776 78888888888999999975 333432 3445
Q ss_pred HHHHHHHH
Q 023494 264 AEAIKGIK 271 (281)
Q Consensus 264 ~~~~~~l~ 271 (281)
++.+..|+
T Consensus 247 E~lv~~L~ 254 (524)
T PRK12344 247 CSIIPNLQ 254 (524)
T ss_pred HHHHHHHH
Confidence 55554443
|
|
| >PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.015 Score=53.18 Aligned_cols=78 Identities=17% Similarity=0.276 Sum_probs=54.3
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.|.+. +|.+++.-++....++.-+ ++-|+++.+.. +.+++++|||+ .+.+.++..+|++.+++
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n---~~~i~~i~~~~-----~~pv~~gGGi~s~~d~~~l~~~G~~~vvi 102 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPN---YELIENLASEC-----FMPLCYGGGIKTLEQAKKIFSLGVEKVSI 102 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCccc---HHHHHHHHHhC-----CCCEEECCCCCCHHHHHHHHHCCCCEEEE
Confidence 567767776553 7888876665432233222 34444444432 36899999996 88999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
|++++...
T Consensus 103 gs~~~~~~ 110 (258)
T PRK01033 103 NTAALEDP 110 (258)
T ss_pred ChHHhcCH
Confidence 99988643
|
|
| >COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.016 Score=52.59 Aligned_cols=77 Identities=14% Similarity=0.251 Sum_probs=54.2
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
.+|++..+.|.+. +.++-+.-.+--+.|++-+... |+++.+.. +.+++|.|||+ .+.+..++++|++.+|
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~---i~~i~~~~-----~~~vQvGGGIRs~~~v~~ll~~G~~rVi 102 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEA---IKEILEAT-----DVPVQVGGGIRSLEDVEALLDAGVARVI 102 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHH---HHHHHHhC-----CCCEEeeCCcCCHHHHHHHHHCCCCEEE
Confidence 4688888887653 6666554444334455544344 44444443 36899999999 8899999999999999
Q ss_pred EcccccC
Q 023494 253 AGSAVFG 259 (281)
Q Consensus 253 vGSaIf~ 259 (281)
+||.-++
T Consensus 103 iGt~av~ 109 (241)
T COG0106 103 IGTAAVK 109 (241)
T ss_pred Eecceec
Confidence 9988765
|
|
| >cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.71 Score=41.05 Aligned_cols=189 Identities=18% Similarity=0.203 Sum_probs=112.4
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeC-cccccc--cCCH----HHHHHcCcCCCCCeeEEEEecChhhHHHHH---HH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNI--TIGP----LVVDALRPVTDLPLDVHLMIVEPEQRVPDF---IK 136 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~--~~G~----~~I~~ir~~t~~~idaHLmv~dp~~~i~~~---~~ 136 (281)
+|-.++++ ++++.+.|. .+| +.-|.+ .-|. +.+++|++..+.++.+-+.-.|++..++.. .+
T Consensus 4 lDsa~~~e-i~~~~~~~~-------i~GvTTNPsll~k~~~~~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~ 75 (211)
T cd00956 4 LDTADLEE-IKKASETGL-------LDGVTTNPSLIAKSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLAS 75 (211)
T ss_pred ecCCCHHH-HHHHHhcCC-------cCccccCHHHHHhcCCcCHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHH
Confidence 56667754 666655542 224 223332 2233 556666655445666666667877766543 34
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-HHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
.+- .+.+=.=. +..--+.++.+++.|+++++..-- +.+. +......++||..+ -|.-. .+-....+.+++
T Consensus 76 ~~~-~~~iKIP~--T~~gl~ai~~L~~~gi~v~~T~V~--s~~Qa~~Aa~AGA~yvsP~---vgR~~-~~g~dg~~~i~~ 146 (211)
T cd00956 76 LGG-NVVVKIPV--TEDGLKAIKKLSEEGIKTNVTAIF--SAAQALLAAKAGATYVSPF---VGRID-DLGGDGMELIRE 146 (211)
T ss_pred hCC-CEEEEEcC--cHhHHHHHHHHHHcCCceeeEEec--CHHHHHHHHHcCCCEEEEe---cChHh-hcCCCHHHHHHH
Confidence 322 23332111 223456777888889998875421 2322 22233358887543 22200 011234677888
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC----CCCHHHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG----AKDYAEAIKGIKT 272 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~----a~dp~~~~~~l~~ 272 (281)
+.+++..++.+.+|.+.|=-|++++-++.++|+|++-++-.+++ .+-..+.++.+.+
T Consensus 147 i~~~~~~~~~~tkil~As~r~~~ei~~a~~~Gad~vTv~~~vl~~l~~~~~t~~~v~~F~~ 207 (211)
T cd00956 147 IRTIFDNYGFDTKILAASIRNPQHVIEAALAGADAITLPPDVLEQLLKHPLTDKGVEKFLE 207 (211)
T ss_pred HHHHHHHcCCCceEEecccCCHHHHHHHHHcCCCEEEeCHHHHHHHhcCccHHHHHHHHHH
Confidence 88888887777888888888899999999999999999977653 4445566666654
|
FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase. |
| >PRK12999 pyruvate carboxylase; Reviewed | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.14 Score=56.28 Aligned_cols=200 Identities=14% Similarity=0.106 Sum_probs=119.1
Q ss_pred EEEecc--CccCHHHHHHHHHHc--CCCeEEEEeeeCccc---ccccC-CHHHHHHcCcC-CCCCeeEEEEecC------
Q 023494 62 PSILSA--NFAKLGEQVKAVELA--GCDWIHVDVMDGRFV---PNITI-GPLVVDALRPV-TDLPLDVHLMIVE------ 126 (281)
Q Consensus 62 pSila~--D~~~l~~~l~~l~~~--G~d~iHiDImDG~fv---pn~~~-G~~~I~~ir~~-t~~~idaHLmv~d------ 126 (281)
.|+++. ...++....+.+.++ |+..+++.-=. +|- +-... -.+.++.+|+. ++.++...+--.|
T Consensus 545 Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~gga-tfd~~~r~l~e~p~erl~~~r~~~~~~~~q~l~Rg~n~vgy~~ 623 (1146)
T PRK12999 545 QSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGA-TFDVAYRFLKEDPWERLAELREAAPNVLFQMLLRGSNAVGYTN 623 (1146)
T ss_pred hccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCc-chhhhccccCCCHHHHHHHHHHhCCCCeEEEEecccccccccC
Confidence 465533 333555556667777 89988875100 111 11222 23567888875 6666665444211
Q ss_pred -h----hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC----------CCHHHHHHhhc-----
Q 023494 127 -P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA----------TSLSAIECVLD----- 186 (281)
Q Consensus 127 -p----~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~----------t~ie~~~~~l~----- 186 (281)
| ..+++.+.++|.|++.+-......+++...++.+|+.|..+-++++.. .+++.+.++..
T Consensus 624 yp~~v~~~~i~~a~~~Gid~~rifd~lnd~~~~~~~i~~vk~~g~~~~~~i~ytg~~~d~~~~~~~~~~~~~~a~~l~~~ 703 (1146)
T PRK12999 624 YPDNVVRAFVREAAAAGIDVFRIFDSLNWVENMRVAIDAVRETGKIAEAAICYTGDILDPARAKYDLDYYVDLAKELEKA 703 (1146)
T ss_pred CCchHHHHHHHHHHHcCCCEEEEeccCChHHHHHHHHHHHHHcCCeEEEEEEEEecCCCCCCCCCCHHHHHHHHHHHHHc
Confidence 2 246888899999998776432224567888999999997655554433 24444444432
Q ss_pred cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc----cccc
Q 023494 187 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG----SAVF 258 (281)
Q Consensus 187 ~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG----SaIf 258 (281)
.+|.|.+ .-..|......+.+.++.+|+.+ +++|.+ |-|....|.-..+++|||++=+- +...
T Consensus 704 Ga~~i~i----kDt~G~l~P~~~~~lv~~lk~~~-----~ipi~~H~Hnt~Gla~an~laA~~aGad~vD~av~glg~~t 774 (1146)
T PRK12999 704 GAHILAI----KDMAGLLKPAAAYELVSALKEEV-----DLPIHLHTHDTSGNGLATYLAAAEAGVDIVDVAVASMSGLT 774 (1146)
T ss_pred CCCEEEE----CCccCCCCHHHHHHHHHHHHHHc-----CCeEEEEeCCCCchHHHHHHHHHHhCCCEEEecchhhcCCc
Confidence 2676654 23345544455567777777654 356776 78888889999999999977433 2233
Q ss_pred CCCCHHHHHHHHH
Q 023494 259 GAKDYAEAIKGIK 271 (281)
Q Consensus 259 ~a~dp~~~~~~l~ 271 (281)
++.+.++.+..|+
T Consensus 775 gn~~le~vv~~L~ 787 (1146)
T PRK12999 775 SQPSLNSIVAALE 787 (1146)
T ss_pred CCHHHHHHHHHHH
Confidence 3344444444444
|
|
| >PF01207 Dus: Dihydrouridine synthase (Dus); InterPro: IPR001269 Members of this family catalyse the reduction of the 5,6-double bond of a uridine residue on tRNA | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.045 Score=51.39 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=87.9
Q ss_pred CHHHHHHcCcCC-CCCeeEEEEecChhhHHHH---HHHcCCCEEEEccccc---------------ccccHHHHHHHHHH
Q 023494 103 GPLVVDALRPVT-DLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQS---------------STIHLHRTLNQIKD 163 (281)
Q Consensus 103 G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~ 163 (281)
.....+.+...+ ..|+.+.|..+||..+.+. +.+.|+|.|=+-.-+. ..+.+.++++.+++
T Consensus 40 ~~~~~~~~~~~~~~~p~~~Ql~g~~~~~~~~aa~~~~~~~~~~IDlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~ 119 (309)
T PF01207_consen 40 NKKTIRLLPFLPNERPLIVQLFGNDPEDLAEAAEIVAELGFDGIDLNMGCPAPKVTKGGAGAALLKDPDLLAEIVKAVRK 119 (309)
T ss_dssp -HHHHHHS-GCC-T-TEEEEEE-S-HHHHHHHHHHHCCTT-SEEEEEE---SHHHHHCT-GGGGGC-HHHHHHHHHHHHH
T ss_pred ccceeecccccccccceeEEEeeccHHHHHHHHHhhhccCCcEEeccCCCCHHHHhcCCcChhhhcChHHhhHHHHhhhc
Confidence 345566665553 3699999999999876543 3455889887753221 12346678888886
Q ss_pred c-CCcEEEEECCCCC--HHHHHHhhc-----cCCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 164 L-GAKAGVVLNPATS--LSAIECVLD-----VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 164 ~-G~k~Glai~p~t~--ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
. ++.+.+=+..... .+...++++ .++.|.| |+-...|.+. +.-++.|+++++.+ +++|..=||
T Consensus 120 ~~~~pvsvKiR~g~~~~~~~~~~~~~~l~~~G~~~i~v---H~Rt~~q~~~~~a~w~~i~~i~~~~-----~ipvi~NGd 191 (309)
T PF01207_consen 120 AVPIPVSVKIRLGWDDSPEETIEFARILEDAGVSAITV---HGRTRKQRYKGPADWEAIAEIKEAL-----PIPVIANGD 191 (309)
T ss_dssp H-SSEEEEEEESECT--CHHHHHHHHHHHHTT--EEEE---ECS-TTCCCTS---HHHHHHCHHC------TSEEEEESS
T ss_pred ccccceEEecccccccchhHHHHHHHHhhhcccceEEE---ecCchhhcCCcccchHHHHHHhhcc-----cceeEEcCc
Confidence 4 6666665544433 232333332 2677755 5555566665 45577777777654 379999999
Q ss_pred CC-hhcHHHHHHc-CCcEEEEcccccCCC
Q 023494 235 VG-PKNAYKVIEA-GANALVAGSAVFGAK 261 (281)
Q Consensus 235 I~-~e~i~~~~~a-GAD~~VvGSaIf~a~ 261 (281)
|. .+.+..+.+. |+|.+.+|++.+..+
T Consensus 192 I~s~~d~~~~~~~tg~dgvMigRgal~nP 220 (309)
T PF01207_consen 192 IFSPEDAERMLEQTGADGVMIGRGALGNP 220 (309)
T ss_dssp --SHHHHHHHCCCH-SSEEEESHHHCC-C
T ss_pred cCCHHHHHHHHHhcCCcEEEEchhhhhcC
Confidence 99 8888888776 999999999987654
|
Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archae. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. Dus 1 (P53759 from SWISSPROT) from Saccharomyces cerevisiae (Baker's yeast) acts on pre-tRNA-Phe, while Dus 2 (P53720 from SWISSPROT) acts on pre-tRNA-Tyr and pre-tRNA-Leu. Dus 1 is active as a single subunit, requiring NADPH or NADH, and is stimulated by the presence of FAD []. Some family members may be targeted to the mitochondria and even have a role in mitochondria []. ; GO: 0017150 tRNA dihydrouridine synthase activity, 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing, 0055114 oxidation-reduction process; PDB: 1VHN_A 3B0P_A 3B0V_D 3B0U_Y. |
| >PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots [] | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.04 Score=53.11 Aligned_cols=121 Identities=19% Similarity=0.315 Sum_probs=71.0
Q ss_pred HcCCCEEEEcccc--cccccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHh-hc-cCCEEEEEeecCCCCCCc--cch
Q 023494 136 KAGADIVSVHCEQ--SSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECV-LD-VVDLVLIMSVNPGFGGQS--FIE 207 (281)
Q Consensus 136 ~aGAd~Itvh~Ea--~~~~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~-l~-~vD~IlvmsV~pG~~GQ~--f~~ 207 (281)
..|.|.++-.... .+.+++.+.++.+|+.+ +.+|+=+.....++.+... .+ .+|+|.+=.-+-|.+..+ +..
T Consensus 170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~~~~ag~D~ItIDG~~GGTGAap~~~~d 249 (368)
T PF01645_consen 170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAGAAKAGADFITIDGAEGGTGAAPLTSMD 249 (368)
T ss_dssp -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHHHHHTT-SEEEEE-TT---SSEECCHHH
T ss_pred CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHhhhhccCCEEEEeCCCCCCCCCchhHHh
Confidence 4577777754332 13456778888888865 8899988777888776663 32 489998755444433322 211
Q ss_pred h----HHHHHHHHHHHhhhcCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 208 S----QVKKISDLRRMCLEKGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~----~l~kI~~lr~l~~~~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
. +..-|.++.+.+.+++. .+.+.++||+. +.++-..+..|||.+-+|++
T Consensus 250 ~~GlP~~~~l~~a~~~L~~~glr~~V~Li~sGgl~t~~dv~kalaLGAD~v~igt~ 305 (368)
T PF01645_consen 250 HVGLPTEYALARAHQALVKNGLRDRVSLIASGGLRTGDDVAKALALGADAVYIGTA 305 (368)
T ss_dssp HC---HHHHHHHHHHHHHCTT-CCCSEEEEESS--SHHHHHHHHHCT-SEEE-SHH
T ss_pred hCCCcHHHHHHHHHHHHHHcCCCCceEEEEeCCccCHHHHHHHHhcCCCeeEecch
Confidence 1 12336666676665443 47799999998 77999999999999999976
|
This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A. |
| >PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.14 Score=49.38 Aligned_cols=182 Identities=14% Similarity=0.148 Sum_probs=95.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccc--cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVP--NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp--n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+...+.++++.+.+.|++.+++ .-|.-.. .+.+=.+.++.||+... .+.++....+.+ .++.+.++|++.+++-
T Consensus 105 s~eEI~~~a~~~~~~Gv~~i~l--vgGe~p~~~~~e~l~~~i~~Ik~~~p-~i~i~~g~lt~e-~l~~Lk~aGv~r~~i~ 180 (371)
T PRK09240 105 DEEEIEREMAAIKKLGFEHILL--LTGEHEAKVGVDYIRRALPIAREYFS-SVSIEVQPLSEE-EYAELVELGLDGVTVY 180 (371)
T ss_pred CHHHHHHHHHHHHhCCCCEEEE--eeCCCCCCCCHHHHHHHHHHHHHhCC-CceeccCCCCHH-HHHHHHHcCCCEEEEE
Confidence 4445666667777889998766 3353221 12333455666665321 122222222322 4578999999999999
Q ss_pred ccccc------------c---ccHHHHHHHHHHcCCc---EEEEECCCCCHHHHHHhhc-------c-------CCEEEE
Q 023494 146 CEQSS------------T---IHLHRTLNQIKDLGAK---AGVVLNPATSLSAIECVLD-------V-------VDLVLI 193 (281)
Q Consensus 146 ~Ea~~------------~---~~i~~~l~~ik~~G~k---~Glai~p~t~ie~~~~~l~-------~-------vD~Ilv 193 (281)
.|+.+ . ++..+.++.+++.|++ .|+.+..+...++..+++. . +-+.-+
T Consensus 181 lET~~~~~~~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Glge~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l 260 (371)
T PRK09240 181 QETYNPATYAKHHLRGPKRDFEYRLETPERAGRAGIRKIGLGALLGLSDWRTDALMTALHLRYLQRKYWQAEYSISFPRL 260 (371)
T ss_pred EecCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHcCCCeeceEEEecCCccHHHHHHHHHHHHHHHHhCCCCceeeecCcc
Confidence 88631 1 1233567777888985 4556554444433333221 1 112234
Q ss_pred EeecCC-CCCCc-cch-hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHH-HHHcCC------cEEEEcccccC
Q 023494 194 MSVNPG-FGGQS-FIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYK-VIEAGA------NALVAGSAVFG 259 (281)
Q Consensus 194 msV~pG-~~GQ~-f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~-~~~aGA------D~~VvGSaIf~ 259 (281)
|.+ || +..++ ..+ +.++-|.-.|-+++. ..|.+.||=.. +++. ++..|+ +...+|.++..
T Consensus 261 ~P~-~g~~~~~~~~~~~e~l~~ia~~Rl~lP~----~~i~~s~g~~~-~lrd~~~~~~~~~~~ag~~~~~G~y~~~ 330 (371)
T PRK09240 261 RPC-TGGIEPASIVSDKQLVQLICAFRLFLPD----VEISLSTRESP-EFRDNLIPLGITKMSAGSSTQPGGYADD 330 (371)
T ss_pred ccC-CCCCCCCCCCCHHHHHHHHHHHHHHCcc----cccEEecCCCH-HHHHHHHhhcceeeccCccCCCCCcCCC
Confidence 555 45 33333 222 345556666666553 46888999542 3332 222333 55555655554
|
|
| >PF00121 TIM: Triosephosphate isomerase; InterPro: IPR000652 Triosephosphate isomerase (5 | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.019 Score=52.33 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=80.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCC-------CCHH----HHHHhhccCC--
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-------TSLS----AIECVLDVVD-- 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-------t~ie----~~~~~l~~vD-- 189 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+.+.+-+.-. ...+ .+...++.++
T Consensus 77 ~~mL~d~G~~~viiGHSERR~~f~E--td~~i~~Kv~~al~~gl~pIvCvGE~~~~~~~~~~~~~l~~Ql~~~l~~i~~~ 154 (244)
T PF00121_consen 77 AEMLKDLGCKYVIIGHSERRQYFGE--TDEIINKKVKAALENGLTPIVCVGETLEERESGKTKEVLKRQLKSILKGIDKE 154 (244)
T ss_dssp HHHHHHTTESEEEESCHHHHHHST---BHHHHHHHHHHHHHTT-EEEEEESSBHHHHHTTCHHHHHHHHHHHHHTTSSGG
T ss_pred HHHHHHhhCCEEEeccccccCcccc--ccHHHHHHHHHHHHCCCEEEEEeccchhhhhcCcHHHHHHHHHHHHHhccccc
Confidence 578899999999885 34 35678888889999999999988641 1112 2223333322
Q ss_pred -----EEEEEeecC-CCCCCccchhHHHH-HHHHHHHhhh-----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEccc
Q 023494 190 -----LVLIMSVNP-GFGGQSFIESQVKK-ISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSA 256 (281)
Q Consensus 190 -----~IlvmsV~p-G~~GQ~f~~~~l~k-I~~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSa 256 (281)
+|.+=++.. |. |+.-.++-.+. .+.+|+.+.+ ...+++|.-.|+|+++|+.++ ...+.|++-+|++
T Consensus 155 ~~~~~iIAYEPvWAIGt-G~~as~~~~~~~~~~Ir~~l~~~~~~~~~~~~~ILYGGSV~~~N~~~l~~~~~iDG~LVG~a 233 (244)
T PF00121_consen 155 ELKNIIIAYEPVWAIGT-GKTASPEQIQEVHAFIREILAELYGEEVANNIRILYGGSVNPENAAELLSQPDIDGVLVGGA 233 (244)
T ss_dssp GGTCEEEEEEEGGGTSS-SS-CCHHHHHHHHHHHHHHHHHHTHHHHHHHSEEEEESSESTTTHHHHHTSTT-SEEEESGG
T ss_pred cccceEEEEcccccccC-CCCCCHHHHHHHHHHHHHHHHHhccccccCceeEEECCcCCcccHHHHhcCCCCCEEEEchh
Confidence 333333332 43 55544443332 3344444321 122478989999999999976 5789999999999
Q ss_pred ccCCCCHH
Q 023494 257 VFGAKDYA 264 (281)
Q Consensus 257 If~a~dp~ 264 (281)
-.+.+++.
T Consensus 234 sl~~~~F~ 241 (244)
T PF00121_consen 234 SLKAESFL 241 (244)
T ss_dssp GGSTHHHH
T ss_pred hhcccchh
Confidence 88766544
|
3.1.1 from EC) (TIM) [] is the glycolytic enzyme that catalyses the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. TIM plays an important role in several metabolic pathways and is essential for efficient energy production. It is present in eukaryotes as well as in prokaryotes. TIM is a dimer of identical subunits, each of which is made up of about 250 amino-acid residues. A glutamic acid residue is involved in the catalytic mechanism [, ]. The tertiary structure of TIM has eight beta/alpha motifs folded into a barrel structure. The TIM barrel fold occurs ubiquitously and is found in numerous other enzymes that can be involved in energy metabolism, macromolecule metabolism, or small molecule metabolism []. The sequence around the active site residue is perfectly conserved in all known TIM's. Deficiencies in TIM are associated with haemolytic anaemia coupled with a progressive, severe neurological disorder [].; GO: 0004807 triose-phosphate isomerase activity, 0008152 metabolic process; PDB: 2YPI_A 1YPI_A 1NEY_B 1NF0_B 1I45_A 7TIM_A 3YPI_B 2H6R_H 2Y63_A 1N55_A .... |
| >cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.099 Score=50.52 Aligned_cols=124 Identities=15% Similarity=0.179 Sum_probs=76.4
Q ss_pred HHHcCCCEEEEcccc-c-----------c-------------cccHHHHHHHHHHc---CCcEEEEECCC----------
Q 023494 134 FIKAGADIVSVHCEQ-S-----------S-------------TIHLHRTLNQIKDL---GAKAGVVLNPA---------- 175 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea-~-----------~-------------~~~i~~~l~~ik~~---G~k~Glai~p~---------- 175 (281)
+.++|.|+|-+|... . . ..-+.++++.+|+. +..+|+=+++.
T Consensus 159 a~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~~~ 238 (382)
T cd02931 159 AKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQGA 238 (382)
T ss_pred HHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccccc
Confidence 357899999999632 1 0 01145888888875 34678767652
Q ss_pred ----------CCHHHHHHhh---c--cCCEEEEEeecCCCCCC------c-cchhH--HHHHHHHHHHhhhcCCCCeEEE
Q 023494 176 ----------TSLSAIECVL---D--VVDLVLIMSVNPGFGGQ------S-FIESQ--VKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 176 ----------t~ie~~~~~l---~--~vD~IlvmsV~pG~~GQ------~-f~~~~--l~kI~~lr~l~~~~~~~~~I~V 231 (281)
...+...+++ + .+|+|-+ ..|...+ . +.+.. ++..+++++.. ++++.+
T Consensus 239 ~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~v---s~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~ 310 (382)
T cd02931 239 LPGEEFQEKGRDLEEGLKAAKILEEAGYDALDV---DAGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-----DVPVIM 310 (382)
T ss_pred ccccccccCCCCHHHHHHHHHHHHHhCCCEEEe---CCCCCcccccccCCccCCcchhHHHHHHHHHHC-----CCCEEE
Confidence 1223332332 2 2788865 3332111 1 11111 23345555543 468889
Q ss_pred ecCCC-hhcHHHHHHcC-CcEEEEcccccCCCCHHH
Q 023494 232 DGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 232 DGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a~dp~~ 265 (281)
-|||+ ++.+.++++.| +|.+-+|+++...+|.-.
T Consensus 311 ~G~i~~~~~~~~~l~~g~~D~V~~gR~~ladP~l~~ 346 (382)
T cd02931 311 AGRMEDPELASEAINEGIADMISLGRPLLADPDVVN 346 (382)
T ss_pred eCCCCCHHHHHHHHHcCCCCeeeechHhHhCccHHH
Confidence 99995 88999999876 999999999998776543
|
Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae. |
| >PLN02561 triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=96.07 E-value=0.17 Score=46.34 Aligned_cols=128 Identities=15% Similarity=0.225 Sum_probs=79.0
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCC-------CH----HHHHHhhccCCEE
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SL----SAIECVLDVVDLV 191 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t-------~i----e~~~~~l~~vD~I 191 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+.+-+-+.-.. .. +.++..+..++-.
T Consensus 81 ~~mL~d~G~~~viiGHSERR~~f~E--td~~v~~Kv~~al~~gl~pIvCvGE~~~er~~~~~~~~v~~Ql~~~l~~v~~~ 158 (253)
T PLN02561 81 AEMLVNLGIPWVILGHSERRALLGE--SNEFVGDKVAYALSQGLKVIACVGETLEQRESGSTMDVVAAQTKAIADKVSDW 158 (253)
T ss_pred HHHHHHcCCCEEEECcccccCccCC--ChHHHHHHHHHHHHCcCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHhccccc
Confidence 578899999999885 33 245577778888899999888775220 00 2344444433211
Q ss_pred --EEEeecCCC---CCCccchhHHHHHH-HHHHHhhh-----cCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccccC
Q 023494 192 --LIMSVNPGF---GGQSFIESQVKKIS-DLRRMCLE-----KGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFG 259 (281)
Q Consensus 192 --lvmsV~pG~---~GQ~f~~~~l~kI~-~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf~ 259 (281)
++..-+|-+ +|+.-.|+-.+.+. .+|+.+.+ ...+++|.-.|+|+++|+.++ ...++|++-+|++=.+
T Consensus 159 ~~iiIAYEPvWAIGtG~~as~~~~~~v~~~Ir~~l~~~~~~~~a~~i~ILYGGSV~~~N~~~l~~~~~iDG~LVG~ASL~ 238 (253)
T PLN02561 159 ANVVLAYEPVWAIGTGKVATPAQAQEVHDELRKWLHKNVSPEVAATTRIIYGGSVTGANCKELAAQPDVDGFLVGGASLK 238 (253)
T ss_pred cceEEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhhcccccccceEEEeCCcCHHHHHHHhcCCCCCeEEEehHhhH
Confidence 223446632 35543344333322 23332221 123578989999999998865 5778999999998765
Q ss_pred C
Q 023494 260 A 260 (281)
Q Consensus 260 a 260 (281)
.
T Consensus 239 ~ 239 (253)
T PLN02561 239 P 239 (253)
T ss_pred H
Confidence 3
|
|
| >cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.087 Score=51.13 Aligned_cols=107 Identities=16% Similarity=0.217 Sum_probs=69.5
Q ss_pred ccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-c-CCEEEEEeecCCCCCCc------cchhHHHHHHHHHHHhh
Q 023494 152 IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-V-VDLVLIMSVNPGFGGQS------FIESQVKKISDLRRMCL 221 (281)
Q Consensus 152 ~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~-vD~IlvmsV~pG~~GQ~------f~~~~l~kI~~lr~l~~ 221 (281)
+++.+.++.+|+.. +.+++=+.+....+.+...++ . +|+|.+-....|.+..+ +-.-+..-|.++++.+.
T Consensus 199 ~~l~~~I~~lr~~~~~~pV~vK~~~~~~~~~~a~~~~~~g~D~I~VsG~~Ggtg~~~~~~~~~~g~pt~~~L~~v~~~~~ 278 (392)
T cd02808 199 EDLAQLIEDLREATGGKPIGVKLVAGHGEGDIAAGVAAAGADFITIDGAEGGTGAAPLTFIDHVGLPTELGLARAHQALV 278 (392)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCCCcccccccCCccHHHHHHHHHHHHH
Confidence 34678899999874 577776665534555555443 4 89998754443332111 11123344555555544
Q ss_pred hc--CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 222 EK--GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 222 ~~--~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+. +.+++|.++|||. ...+.+++..|||.+-+|+.+.
T Consensus 279 ~~~~~~~i~viasGGI~~g~Dv~kalaLGAd~V~ig~~~l 318 (392)
T cd02808 279 KNGLRDRVSLIASGGLRTGADVAKALALGADAVGIGTAAL 318 (392)
T ss_pred HcCCCCCCeEEEECCCCCHHHHHHHHHcCCCeeeechHHH
Confidence 32 2357899999997 7789999999999999998865
|
GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor. |
| >TIGR02814 pfaD_fam PfaD family protein | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.21 Score=49.29 Aligned_cols=70 Identities=23% Similarity=0.302 Sum_probs=45.7
Q ss_pred CCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhh-cCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 188 VDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLE-KGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 188 vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~-~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|.|.+- .+.|- .|+.-....+..|.++++.+.+ .++ .++|.+.|||. ++.+..+...|||.+.+||...
T Consensus 183 aD~Ivve-~EAGGHtg~~~~~~Llp~i~~lrd~v~~~~~y~~~VpViAAGGI~t~~~vaAAlaLGAdgV~~GT~fl 257 (444)
T TIGR02814 183 ADDICVE-ADSGGHTDNRPLVVLLPAIIRLRDTLMRRYGYRKPIRVGAAGGIGTPEAAAAAFMLGADFIVTGSVNQ 257 (444)
T ss_pred CcEEEEe-ccCCCCCCCCcHHHHHHHHHHHHHHHhhcccCCCCceEEEeCCCCCHHHHHHHHHcCCcEEEeccHHH
Confidence 5777653 45432 2332223335556555555421 122 46799999996 8899999999999999998854
|
The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se. |
| >cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.2 Score=44.10 Aligned_cols=137 Identities=15% Similarity=0.119 Sum_probs=78.0
Q ss_pred EecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC
Q 023494 123 MIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF 200 (281)
Q Consensus 123 mv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~ 200 (281)
...||.++.+.+.++||+++++..+......-.+.++.+++. ++.+.+ -..-.+.+.++.+.+ .+|.|+++....
T Consensus 29 ~~~~~~~~A~~~~~~GA~~l~v~~~~~~~~g~~~~~~~i~~~v~iPi~~-~~~i~~~~~v~~~~~~Gad~v~l~~~~~-- 105 (217)
T cd00331 29 EDFDPVEIAKAYEKAGAAAISVLTEPKYFQGSLEDLRAVREAVSLPVLR-KDFIIDPYQIYEARAAGADAVLLIVAAL-- 105 (217)
T ss_pred CCCCHHHHHHHHHHcCCCEEEEEeCccccCCCHHHHHHHHHhcCCCEEE-CCeecCHHHHHHHHHcCCCEEEEeeccC--
Confidence 345777888889999999999986642222233566666664 333332 111133345565554 489998864421
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc--cCCCCHHHHHHHHHHhc
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV--FGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI--f~a~dp~~~~~~l~~~~ 274 (281)
.+ +.++++.+.....+....+.+. +.+.+..+.+.|+|.+.+++.= ....++ +.++++++.+
T Consensus 106 -----~~---~~~~~~~~~~~~~g~~~~v~v~---~~~e~~~~~~~g~~~i~~t~~~~~~~~~~~-~~~~~l~~~~ 169 (217)
T cd00331 106 -----DD---EQLKELYELARELGMEVLVEVH---DEEELERALALGAKIIGINNRDLKTFEVDL-NTTERLAPLI 169 (217)
T ss_pred -----CH---HHHHHHHHHHHHcCCeEEEEEC---CHHHHHHHHHcCCCEEEEeCCCccccCcCH-HHHHHHHHhC
Confidence 11 2233333333333433333443 7778899999999999887321 112344 5566666554
|
IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis. |
| >PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.092 Score=50.32 Aligned_cols=126 Identities=20% Similarity=0.289 Sum_probs=80.3
Q ss_pred CCCeeEEEEe--cChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc----------CCcEEEEECCCC-CHHHH
Q 023494 115 DLPLDVHLMI--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL----------GAKAGVVLNPAT-SLSAI 181 (281)
Q Consensus 115 ~~~idaHLmv--~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~----------G~k~Glai~p~t-~ie~~ 181 (281)
++|+...=|- .++ +....+.+.|.=.| +|.+. +.++..+.++.+|++ ...++.++.+.. ..+++
T Consensus 37 ~iPivsa~MDtVte~-~mAiama~~Gglgv-ih~~~-~~e~q~~~v~~vK~~~~~a~~d~~~~l~V~aavg~~~~~~er~ 113 (352)
T PF00478_consen 37 KIPIVSAPMDTVTES-EMAIAMARLGGLGV-IHRNM-SIEEQAEEVKKVKRYYPNASKDEKGRLLVAAAVGTRDDDFERA 113 (352)
T ss_dssp SSSEEE-SSTTTSSH-HHHHHHHHTTSEEE-EESSS-CHHHHHHHHHHHHTHHTTHHBHTTSCBCEEEEEESSTCHHHHH
T ss_pred cCceEecCccccchH-HHHHHHHHhcCCce-ecCCC-CHHHHHHHHhhhccccccccccccccceEEEEecCCHHHHHHH
Confidence 3566554443 222 34445667765444 67665 244445556665542 567888998875 56888
Q ss_pred HHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 182 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 182 ~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
..+++ .+|+|.+=+-| | .....++.|+++|+..+ +.+| +.|+|- .+.+..+.++|||.+-||
T Consensus 114 ~~L~~agvD~ivID~a~-g-----~s~~~~~~ik~ik~~~~----~~~v-iaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 114 EALVEAGVDVIVIDSAH-G-----HSEHVIDMIKKIKKKFP----DVPV-IAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHTT-SEEEEE-SS-T-----TSHHHHHHHHHHHHHST----TSEE-EEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHcCCCEEEccccC-c-----cHHHHHHHHHHHHHhCC----CceE-EecccCCHHHHHHHHHcCCCEEEEe
Confidence 88775 59999764333 2 34566778888888765 3566 566655 889999999999999999
|
These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. |
| >PRK10605 N-ethylmaleimide reductase; Provisional | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.14 Score=49.20 Aligned_cols=122 Identities=19% Similarity=0.263 Sum_probs=75.0
Q ss_pred HHHcCCCEEEEccccc-------c-------------cc----cHHHHHHHHHHc-CC-cEEEEECCC---------CCH
Q 023494 134 FIKAGADIVSVHCEQS-------S-------------TI----HLHRTLNQIKDL-GA-KAGVVLNPA---------TSL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~-------~-------------~~----~i~~~l~~ik~~-G~-k~Glai~p~---------t~i 178 (281)
+.++|.|+|-+|+-.. + .+ -+.++++.+|+. |- .+|+=+++. ...
T Consensus 168 A~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~~~~G~~~ 247 (362)
T PRK10605 168 AREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNNVDNGPNE 247 (362)
T ss_pred HHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCccccccCCCCCCH
Confidence 4678999999995431 0 00 145788888874 32 377767653 122
Q ss_pred HH-HHH---hhc--cCCEEEEEeecCCCC-CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcE
Q 023494 179 SA-IEC---VLD--VVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANA 250 (281)
Q Consensus 179 e~-~~~---~l~--~vD~IlvmsV~pG~~-GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~ 250 (281)
++ ..+ .++ .+|+|-+-. +++. +..+.. .--+++|+.. +.+|.+-|+++++.+.++++.| +|.
T Consensus 248 ~e~~~~~~~~L~~~giD~i~vs~--~~~~~~~~~~~---~~~~~ik~~~-----~~pv~~~G~~~~~~ae~~i~~G~~D~ 317 (362)
T PRK10605 248 EADALYLIEQLGKRGIAYLHMSE--PDWAGGEPYSD---AFREKVRARF-----HGVIIGAGAYTAEKAETLIGKGLIDA 317 (362)
T ss_pred HHHHHHHHHHHHHcCCCEEEecc--ccccCCccccH---HHHHHHHHHC-----CCCEEEeCCCCHHHHHHHHHcCCCCE
Confidence 22 222 233 278887642 2222 222221 1123344433 3578888999999999999988 999
Q ss_pred EEEcccccCCCCHHH
Q 023494 251 LVAGSAVFGAKDYAE 265 (281)
Q Consensus 251 ~VvGSaIf~a~dp~~ 265 (281)
+-+|+++...+|...
T Consensus 318 V~~gR~~iadPd~~~ 332 (362)
T PRK10605 318 VAFGRDYIANPDLVA 332 (362)
T ss_pred EEECHHhhhCccHHH
Confidence 999999997666543
|
|
| >cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5 | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.13 Score=49.38 Aligned_cols=124 Identities=15% Similarity=0.161 Sum_probs=76.3
Q ss_pred HHHcCCCEEEEccccc--------------------cc----ccHHHHHHHHHHc-C--CcEEEEECCC----------C
Q 023494 134 FIKAGADIVSVHCEQS--------------------ST----IHLHRTLNQIKDL-G--AKAGVVLNPA----------T 176 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------------------~~----~~i~~~l~~ik~~-G--~k~Glai~p~----------t 176 (281)
+.++|.|+|-+|.-.. +. .-+.++++.+|+. | ..+|+=+++. .
T Consensus 153 a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~g~ 232 (361)
T cd04747 153 ARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARLAD 232 (361)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCCCC
Confidence 4678999999996541 00 0155889999985 5 5688878752 1
Q ss_pred CHHHHHHh---hc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC----------------
Q 023494 177 SLSAIECV---LD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV---------------- 235 (281)
Q Consensus 177 ~ie~~~~~---l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI---------------- 235 (281)
..++...+ +. .+|+|-+-+. ++..+.+.....+-.+++++.. +.++.+-|||
T Consensus 233 ~~~e~~~~~~~l~~~gvd~i~vs~g--~~~~~~~~~~~~~~~~~~k~~~-----~~pv~~~G~i~~~~~~~~~~~~~~~~ 305 (361)
T cd04747 233 TPDELEALLAPLVDAGVDIFHCSTR--RFWEPEFEGSELNLAGWTKKLT-----GLPTITVGSVGLDGDFIGAFAGDEGA 305 (361)
T ss_pred CHHHHHHHHHHHHHcCCCEEEecCC--CccCCCcCccchhHHHHHHHHc-----CCCEEEECCccccccccccccccccc
Confidence 22222222 33 2799765321 1112222221222334444433 3688899998
Q ss_pred ---ChhcHHHHHHcC-CcEEEEcccccCCCCHH
Q 023494 236 ---GPKNAYKVIEAG-ANALVAGSAVFGAKDYA 264 (281)
Q Consensus 236 ---~~e~i~~~~~aG-AD~~VvGSaIf~a~dp~ 264 (281)
+++.+.++++.| +|.+-+|+++...++..
T Consensus 306 ~~~~~~~a~~~l~~g~~D~V~~gR~~iadP~~~ 338 (361)
T cd04747 306 SPASLDRLLERLERGEFDLVAVGRALLSDPAWV 338 (361)
T ss_pred ccCCHHHHHHHHHCCCCCeehhhHHHHhCcHHH
Confidence 678899999876 99999999998766643
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >PRK00915 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.24 Score=49.76 Aligned_cols=185 Identities=19% Similarity=0.167 Sum_probs=108.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHH----HcCCCEEEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFI----KAGADIVSV 144 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~----~aGAd~Itv 144 (281)
.-.+..+.|.+.|+|+|++ | | |..+ --.+.++.|.+. .+..+-++... ++. -++... ++|++.|++
T Consensus 27 ~K~~ia~~L~~~Gv~~IE~----G-~-p~~s~~d~~~v~~i~~~~~~~~i~a~~r~-~~~-did~a~~a~~~~~~~~v~i 98 (513)
T PRK00915 27 EKLQIAKQLERLGVDVIEA----G-F-PASSPGDFEAVKRIARTVKNSTVCGLARA-VKK-DIDAAAEALKPAEAPRIHT 98 (513)
T ss_pred HHHHHHHHHHHcCCCEEEE----c-C-CCCChHHHHHHHHHHhhCCCCEEEEEccC-CHH-HHHHHHHHhhcCCCCEEEE
Confidence 3345567788899998887 4 3 2211 123456666432 33444443322 222 344444 778888887
Q ss_pred cccccccc---------------cHHHHHHHHHHcCCcEEEEECC--CCCHHHHHHhhcc-----CCEEEEEeecCCCCC
Q 023494 145 HCEQSSTI---------------HLHRTLNQIKDLGAKAGVVLNP--ATSLSAIECVLDV-----VDLVLIMSVNPGFGG 202 (281)
Q Consensus 145 h~Ea~~~~---------------~i~~~l~~ik~~G~k~Glai~p--~t~ie~~~~~l~~-----vD~IlvmsV~pG~~G 202 (281)
..-.. .. .+.+.++.+|++|.++-+.... .++.+.+.+++.. +|.|.+ |-..|
T Consensus 99 ~~~~S-d~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~f~~ed~~r~d~~~l~~~~~~~~~~Ga~~i~l----~DTvG 173 (513)
T PRK00915 99 FIATS-PIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVEFSAEDATRTDLDFLCRVVEAAIDAGATTINI----PDTVG 173 (513)
T ss_pred EECCc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEE----ccCCC
Confidence 75431 22 1457888999999998766532 3566666665443 566654 33344
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~ 271 (281)
.....++.+.++.+++.++. ..+.+|++ |-|.-..|.-..+++||+.+ =+.+++ +.+.++.+..|+
T Consensus 174 ~~~P~~~~~~i~~l~~~~~~-~~~v~l~~H~HND~GlAvANslaAv~aGa~~V--d~Tv~GlGERaGNa~lE~vv~~L~ 249 (513)
T PRK00915 174 YTTPEEFGELIKTLRERVPN-IDKAIISVHCHNDLGLAVANSLAAVEAGARQV--ECTINGIGERAGNAALEEVVMALK 249 (513)
T ss_pred CCCHHHHHHHHHHHHHhCCC-cccceEEEEecCCCCHHHHHHHHHHHhCCCEE--EEEeecccccccCccHHHHHHHHH
Confidence 44445556677777766532 11256776 88999889989999999965 334432 345555555553
|
|
| >TIGR00167 cbbA ketose-bisphosphate aldolases | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.57 Score=43.76 Aligned_cols=186 Identities=16% Similarity=0.211 Sum_probs=114.9
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcCC--CCCeeEEEEecChhhHHHHHHH
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPVT--DLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~t--~~~idaHLmv~dp~~~i~~~~~ 136 (281)
..=+.|+..+.-.++.+++.+...| +-+-.++. . ...|++. ++...+.. +.|+-+||==....+++..+.+
T Consensus 22 AfN~~n~e~~~avi~AAee~~sPvI-lq~~~~~~-~-~~~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~ 98 (288)
T TIGR00167 22 AFNINNLETINAVLEAAAEEKSPVI-IQFSNGAA-K-YIAGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVK 98 (288)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEE-EECCcchh-h-ccCCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHH
Confidence 3333445555566788888888765 54444421 0 1023443 22233334 6799999855544567888999
Q ss_pred cCCCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEEE------------CCCCCHHHHHHhhcc--CCEEEE-
Q 023494 137 AGADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVVL------------NPATSLSAIECVLDV--VDLVLI- 193 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Glai------------~p~t~ie~~~~~l~~--vD~Ilv- 193 (281)
+|.+.|-+=.-..+. ..-.++.+.++..|+-+ |-.- ..-|..+..+++... +|.+.+
T Consensus 99 ~GftSVMiDgS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAva 178 (288)
T TIGR00167 99 AGFSSVMIDGSHEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFVKLTGVDSLAAA 178 (288)
T ss_pred cCCCEEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHhccCCcEEeec
Confidence 997777665433221 12346677788888755 2210 113566788888764 888654
Q ss_pred -EeecCCCCCCccchh--HHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 194 -MSVNPGFGGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 194 -msV~pG~~GQ~f~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.++|-.+.+ .|. -+++|+++++.+ ++++..=||-+ .+.++++++.|+.-+=+++.+..
T Consensus 179 iGt~HG~y~~---~p~~Ld~~~L~~I~~~v-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 241 (288)
T TIGR00167 179 IGNVHGVYKG---EPKGLDFERLEEIQKYV-----NLPLVLHGGSGIPDEEIKKAISLGVVKVNIDTELQI 241 (288)
T ss_pred cCccccccCC---CCCccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEcChHHHH
Confidence 344422222 233 467777777765 36888877655 67999999999999999998853
|
fructose-bisphosphate and tagatose-bisphosphate aldolase. |
| >PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.38 Score=44.82 Aligned_cols=180 Identities=15% Similarity=0.203 Sum_probs=112.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
.|+..+.-.++.+++.+...| +-+-.+.+ --.|.+ +++.+.+..+.|+-+||==..-...+..++++|.+.|
T Consensus 26 ~n~e~~~avi~AAe~~~sPvI-l~~~~~~~---~~~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftSV 101 (283)
T PRK07998 26 TNLETTISILNAIERSGLPNF-IQIAPTNA---QLSGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTSV 101 (283)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EECcHhHH---hhCCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCEE
Confidence 344444556677777777764 33322211 012333 3333334457899999865443457888999999888
Q ss_pred EEccccccc----ccHHHHHHHHHHcCCcE----EEEE----------CCCCCHHHHHHhhc--cCCEEEE--EeecCCC
Q 023494 143 SVHCEQSST----IHLHRTLNQIKDLGAKA----GVVL----------NPATSLSAIECVLD--VVDLVLI--MSVNPGF 200 (281)
Q Consensus 143 tvh~Ea~~~----~~i~~~l~~ik~~G~k~----Glai----------~p~t~ie~~~~~l~--~vD~Ilv--msV~pG~ 200 (281)
-+=.-..+. ..-.++.+.++.+|+-+ |-.- ..-|..+...++.. .+|.+.+ .++| |.
T Consensus 102 M~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~H-G~ 180 (283)
T PRK07998 102 MIDGAALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVERTGCDMLAVSIGNVH-GL 180 (283)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHHHhCcCeeehhccccc-cC
Confidence 874322221 23457788888889754 3221 11367777788776 4887643 3444 32
Q ss_pred CCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 201 GGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 201 ~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.- . |.. +++++++++.. ++++..=||-+ .+.++++++.|+.-+-+|+.+..
T Consensus 181 Y~--~-p~l~~~~l~~I~~~~-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~Tel~~ 234 (283)
T PRK07998 181 ED--I-PRIDIPLLKRIAEVS-----PVPLVIHGGSGIPPEILRSFVNYKVAKVNIASDLRK 234 (283)
T ss_pred CC--C-CCcCHHHHHHHHhhC-----CCCEEEeCCCCCCHHHHHHHHHcCCcEEEECHHHHH
Confidence 21 1 333 67777777654 47888888655 68999999999999999999864
|
|
| >PRK08610 fructose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.65 Score=43.35 Aligned_cols=188 Identities=16% Similarity=0.198 Sum_probs=115.4
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCC--CCeeEEEEecChhhHHHHHHHcC
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTD--LPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~--~~idaHLmv~dp~~~i~~~~~aG 138 (281)
..=+.|+..+.-.++.+++.+...| +-+-.++ |.+.+..=..+++.+.+..+ .|+-+||==....+.+..++++|
T Consensus 22 AfN~~n~e~~~avi~AAee~~sPvI-l~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~G 100 (286)
T PRK08610 22 QYNLNNLEFTQAILEASQEENAPVI-LGVSEGAARYMSGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAG 100 (286)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCEE-EEcCccHHhhcCcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcC
Confidence 3333455555566788888888765 5544442 22211111123444333333 79999985544455788899999
Q ss_pred CCEEEEcccccc----cccHHHHHHHHHHcCCcE----EEEE--------C--CCCCHHHHHHhhc--cCCEEEE--Eee
Q 023494 139 ADIVSVHCEQSS----TIHLHRTLNQIKDLGAKA----GVVL--------N--PATSLSAIECVLD--VVDLVLI--MSV 196 (281)
Q Consensus 139 Ad~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~----Glai--------~--p~t~ie~~~~~l~--~vD~Ilv--msV 196 (281)
.+.|-+=.-..+ ...-.++++.++..|+-+ |-.= . .-|..+..+++.+ .+|.+.+ .++
T Consensus 101 ftSVM~DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~~TgvD~LAvaiGt~ 180 (286)
T PRK08610 101 FTSVMIDASHSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVEKTGIDALAPALGSV 180 (286)
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHHHHCCCEEEeecccc
Confidence 887766543322 123456777888888654 3220 1 1377788888876 4897654 344
Q ss_pred cCCCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 197 NPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 197 ~pG~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|--+.|. |.. +++|+++++.+ ++++..=||-+ .+.++++++.|+.-+=+++.+..
T Consensus 181 HG~Y~~~---p~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e~~~~ai~~GI~KiNi~T~l~~ 238 (286)
T PRK08610 181 HGPYKGE---PKLGFKEMEEIGLST-----GLPLVLHGGTGIPTKDIQKAIPFGTAKINVNTENQI 238 (286)
T ss_pred ccccCCC---CCCCHHHHHHHHHHH-----CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeccHHHH
Confidence 4222232 232 67777777654 37888877655 68999999999999999999853
|
|
| >TIGR00419 tim triosephosphate isomerase | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.13 Score=45.69 Aligned_cols=125 Identities=17% Similarity=0.215 Sum_probs=75.9
Q ss_pred HHHHHHcCCCEEEEc-cccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC---CCCcc
Q 023494 131 VPDFIKAGADIVSVH-CEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF---GGQSF 205 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~---~GQ~f 205 (281)
.+++.++|++++.+. .|-- ...++.+-++.+.++|+.+.+-+ ....+.+....-.-++| .-+|-+ +|..-
T Consensus 74 ~~mLkd~G~~~viiGHSERRf~Etdi~~Kv~~a~~~gl~~IvCi--~~v~~q~~~~~~~~~vI---AYEPvWAIGtG~~a 148 (205)
T TIGR00419 74 AEMLKDIGAKGTLINHSERRMKLADIEKKIARLKELGLTSVVCT--NNVLTTAAAAALEPDVV---AVEPPELIGTGIPV 148 (205)
T ss_pred HHHHHHcCCCEEEECcccCCCCccHHHHHHHHHHHCCCEEEEEE--HHHHHHHHhhhhcCeEE---EECCHHHhCCCCCC
Confidence 567889999988875 3310 11237788888999999988877 11222221111112233 346632 35443
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccccCC
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGA 260 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf~a 260 (281)
.++-.+.+....+...+...+.+|.-.|||+++|+.++ .+.++|.+-+|++..++
T Consensus 149 s~~~~~~v~~~ir~~~~~~~~~~IlYGGSV~~~N~~~l~~~~~iDG~LvG~Asl~a 204 (205)
T TIGR00419 149 SPAQPEVVHGSVRAVKEVNESVRVLCGAGISTGEDAELAAQLGAEGVLLASGSLKA 204 (205)
T ss_pred CHHHHHHHHHHHHhhhhhcCCceEEEeCCCCHHHHHHHhcCCCCCEEEEeeeeecC
Confidence 44444443333333222233578889999999999976 67789999999997754
|
Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family. |
| >TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.38 Score=44.76 Aligned_cols=182 Identities=12% Similarity=0.151 Sum_probs=113.4
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
|+..+.-.++.+++.+...| +.+-.++ |.+.-.+ ..+++.+.+..+.|+-+||==....+.+..++++|.+.|-+=
T Consensus 25 n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~~~~~~-~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtSVM~D 102 (282)
T TIGR01858 25 NLETIQAVVETAAEMRSPVI-LAGTPGTFKHAGTEYI-VALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRSAMID 102 (282)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEeCccHHhhCCHHHH-HHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEeec
Confidence 44444556677778777765 5554443 2221111 123444444456899999865444457888999998877665
Q ss_pred ccccc----cccHHHHHHHHHHcCCcE----EEE--------E----CCCCCHHHHHHhhc--cCCEEEE--EeecCCCC
Q 023494 146 CEQSS----TIHLHRTLNQIKDLGAKA----GVV--------L----NPATSLSAIECVLD--VVDLVLI--MSVNPGFG 201 (281)
Q Consensus 146 ~Ea~~----~~~i~~~l~~ik~~G~k~----Gla--------i----~p~t~ie~~~~~l~--~vD~Ilv--msV~pG~~ 201 (281)
.-..+ ...-.++.+.++..|+-+ |-. . ..-|..+..+++.+ .+|.+.+ .++|--+.
T Consensus 103 gS~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~yk 182 (282)
T TIGR01858 103 GSHFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVEATGVDSLAVAIGTAHGLYK 182 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHHHHCcCEEecccCccccCcC
Confidence 43322 123457778888888655 221 0 11356677777776 4898654 34442222
Q ss_pred CCccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 202 GQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+ .|. .+++|+++++.+ ++++..=||-+ .|.++++++.|+.-+=+++.+..
T Consensus 183 ~---~p~Ldf~~L~~I~~~~-----~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 235 (282)
T TIGR01858 183 K---TPKLDFDRLAEIREVV-----DVPLVLHGASDVPDEDVRRTIELGICKVNVATELKI 235 (282)
T ss_pred C---CCccCHHHHHHHHHHh-----CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 3 232 267777777765 36888877654 78999999999999999998863
|
This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4. |
| >COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=95.85 E-value=0.3 Score=47.05 Aligned_cols=198 Identities=21% Similarity=0.293 Sum_probs=105.4
Q ss_pred eEEEeccC-ccCHHHHHHHHHHcCCCeEEEEeee-Ccc----ccc--ccCCHHHHHHcCcCCCCCeeEEEEe-cChhhHH
Q 023494 61 SPSILSAN-FAKLGEQVKAVELAGCDWIHVDVMD-GRF----VPN--ITIGPLVVDALRPVTDLPLDVHLMI-VEPEQRV 131 (281)
Q Consensus 61 ~pSila~D-~~~l~~~l~~l~~~G~d~iHiDImD-G~f----vpn--~~~G~~~I~~ir~~t~~~idaHLmv-~dp~~~i 131 (281)
.|.++.-+ ..-+.+..+.+.+.|.... +=+.- |.+ .|+ ....|+.+.. + .......+-|+ .+..+.+
T Consensus 73 ~~~l~~d~~i~~~~~vt~avH~~G~~i~-iQL~H~Gr~~~~~~~~~~~~vapS~~~~-~--~~~~~~pr~mt~~eI~~ii 148 (363)
T COG1902 73 QPGLWSDAQIPGLKRLTEAVHAHGAKIF-IQLWHAGRKARASHPWLPSAVAPSAIPA-P--GGRRATPRELTEEEIEEVI 148 (363)
T ss_pred CCccCChhHhHHHHHHHHHHHhcCCeEE-EEeccCcccccccccCCCcccCCCcccc-c--cCCCCCCccCCHHHHHHHH
Confidence 45555544 4566677777888777532 33333 322 111 1222321111 0 00122334454 2333333
Q ss_pred H-------HHHHcCCCEEEEccccc--------------------ccc----cHHHHHHHHHHc-CC--cEEEEECCCCC
Q 023494 132 P-------DFIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA--KAGVVLNPATS 177 (281)
Q Consensus 132 ~-------~~~~aGAd~Itvh~Ea~--------------------~~~----~i~~~l~~ik~~-G~--k~Glai~p~t~ 177 (281)
+ .+.+||.|+|-+|+... +.+ -+.++++++|+. |. -+|+=++|...
T Consensus 149 ~~f~~AA~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d~ 228 (363)
T COG1902 149 EDFARAARRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDDF 228 (363)
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECcccc
Confidence 3 34678999999996431 001 155777777764 54 37887887544
Q ss_pred -------HHHHHHh---hcc---CCEEEEEeecCCCCCCc-cc-h-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcH
Q 023494 178 -------LSAIECV---LDV---VDLVLIMSVNPGFGGQS-FI-E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA 240 (281)
Q Consensus 178 -------ie~~~~~---l~~---vD~IlvmsV~pG~~GQ~-f~-~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i 240 (281)
+++..++ +.. +|||-+..-..-..++. .. + .-....+.++... ..++.+.|||+ ++.+
T Consensus 229 ~~~~g~~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~-----~~pvi~~G~i~~~~~A 303 (363)
T COG1902 229 FDGGGLTIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV-----RIPVIAVGGINDPEQA 303 (363)
T ss_pred CCCCCCCHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhc-----CCCEEEeCCCCCHHHH
Confidence 2233333 222 58887643211101111 11 1 1122223333321 25777888887 9999
Q ss_pred HHHHHcC-CcEEEEcccccCCCCHHHHH
Q 023494 241 YKVIEAG-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 241 ~~~~~aG-AD~~VvGSaIf~a~dp~~~~ 267 (281)
.++++.| ||.+.+|+.+...+|....+
T Consensus 304 e~~l~~g~aDlVa~gR~~ladP~~~~k~ 331 (363)
T COG1902 304 EEILASGRADLVAMGRPFLADPDLVLKA 331 (363)
T ss_pred HHHHHcCCCCEEEechhhhcCccHHHHH
Confidence 9999998 99999999999877765444
|
|
| >cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.093 Score=50.05 Aligned_cols=126 Identities=13% Similarity=0.110 Sum_probs=75.2
Q ss_pred HHHcCCCEEEEcccc--------cc----------------cccHHHHHHHHHHc-CC--cEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCEQ--------SS----------------TIHLHRTLNQIKDL-GA--KAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea--------~~----------------~~~i~~~l~~ik~~-G~--k~Glai~p~------t~ie~ 180 (281)
+.++|.|+|-+|... .+ ..-+.++++.+|+. |. .+++=+++. .+.+.
T Consensus 146 a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~D~~~~g~~~~e 225 (353)
T cd02930 146 AREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSMLDLVEGGSTWEE 225 (353)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEecccccCCCCCCHHH
Confidence 467899999999731 01 11245788888874 54 455545432 24433
Q ss_pred HHHh---hc--cCCEEEEEee-c--CCCCCC-ccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-C
Q 023494 181 IECV---LD--VVDLVLIMSV-N--PGFGGQ-SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-A 248 (281)
Q Consensus 181 ~~~~---l~--~vD~IlvmsV-~--pG~~GQ-~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-A 248 (281)
..++ ++ .+|+|-+... + |-...+ .+.+. -++..+++++.. +++|.+.|+++ ++.+.++++.| +
T Consensus 226 ~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v-----~iPVi~~G~i~~~~~a~~~i~~g~~ 300 (353)
T cd02930 226 VVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRAV-----DIPVIASNRINTPEVAERLLADGDA 300 (353)
T ss_pred HHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHhC-----CCCEEEcCCCCCHHHHHHHHHCCCC
Confidence 3332 33 2799876211 1 110011 11111 133344555543 47899999995 88999999977 9
Q ss_pred cEEEEcccccCCCCHH
Q 023494 249 NALVAGSAVFGAKDYA 264 (281)
Q Consensus 249 D~~VvGSaIf~a~dp~ 264 (281)
|++-+|++++..++.-
T Consensus 301 D~V~~gR~~l~dP~~~ 316 (353)
T cd02930 301 DMVSMARPFLADPDFV 316 (353)
T ss_pred ChhHhhHHHHHCccHH
Confidence 9999999999777653
|
DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi |
| >cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases | Back alignment and domain information |
|---|
Probab=95.78 E-value=0.66 Score=43.10 Aligned_cols=185 Identities=15% Similarity=0.201 Sum_probs=113.1
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
+.|+..+.-.++.+++.+...| +.+-.++ |.+ +.+-...++.+.+....|+-+||==......+..++++|.+.|-
T Consensus 20 ~~n~e~~~avi~AAe~~~sPvI-i~~~~~~~~~~~-~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftSVM 97 (276)
T cd00947 20 INNLETLKAILEAAEETRSPVI-LQISEGAIKYAG-LELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSSVM 97 (276)
T ss_pred eCCHHHHHHHHHHHHHhCCCEE-EEcCcchhhhCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCEEE
Confidence 3344455566777888877765 4444432 222 11112234444444568999998554334567888999988777
Q ss_pred Eccccccc----ccHHHHHHHHHHcCCcE----EEEEC----------CCCCHHHHHHhhc--cCCEEEE--EeecCCCC
Q 023494 144 VHCEQSST----IHLHRTLNQIKDLGAKA----GVVLN----------PATSLSAIECVLD--VVDLVLI--MSVNPGFG 201 (281)
Q Consensus 144 vh~Ea~~~----~~i~~~l~~ik~~G~k~----Glai~----------p~t~ie~~~~~l~--~vD~Ilv--msV~pG~~ 201 (281)
+=.-..+. ..-.++++.+++.|+-+ |-.-. --|..+..+++.+ .+|.+.+ .++|-.+.
T Consensus 98 iD~S~l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvsiGt~HG~Y~ 177 (276)
T cd00947 98 IDGSHLPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVEETGVDALAVAIGTSHGAYK 177 (276)
T ss_pred eCCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHHHHCCCEEEeccCccccccC
Confidence 65433221 12456777888888755 22211 1256777888876 4888654 34442222
Q ss_pred C-CccchhHHHHHHHHHHHhhhcCCCCeEEEecCC--ChhcHHHHHHcCCcEEEEcccccC
Q 023494 202 G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 202 G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI--~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+ ++ .--+++|+++++.+ ++++..=||= ..+.++++++.|+.-+=+++.+..
T Consensus 178 ~~~p--~L~~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 231 (276)
T cd00947 178 GGEP--KLDFDRLKEIAERV-----NVPLVLHGGSGIPDEQIRKAIKLGVCKININTDLRL 231 (276)
T ss_pred CCCC--ccCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 2 22 12266777777765 3678777754 477999999999999999998864
|
TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >PRK08662 nicotinate phosphoribosyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=95.77 E-value=0.11 Score=49.53 Aligned_cols=100 Identities=12% Similarity=0.121 Sum_probs=59.0
Q ss_pred HHHHHHHHHHc---CCcEEEEECCC-CCHHHHHHhhc----cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC-
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPA-TSLSAIECVLD----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG- 224 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~-t~ie~~~~~l~----~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~- 224 (281)
..+.++.+++. ..++-+.+..- +.++......+ .+|.|.+=+..|.+ | -.++. ++++++.+++.+
T Consensus 186 ~~~A~~~~~~~~p~~~~i~vevdt~~~~~~~Al~~~~~~~~~~d~I~LDn~~~~~-g--~l~~~---v~~vr~~ld~~g~ 259 (343)
T PRK08662 186 QVEAWKAFDEVVPPDVPRIALVDTFKDEREEALRAAEALGDRLDGVRLDTPSSRR-G--NFRKI---VREVRWTLDIRGY 259 (343)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEeCCccHHHHHHHHHHhCCcCCEEEcCCCCCCC-c--cHHHH---HHHHHHHHHhcCC
Confidence 45567777764 33455544332 34443333332 37777651111100 1 11222 334444443443
Q ss_pred CCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 225 VNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 225 ~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+..|++.||||++|+.++.+. +|++-+|+.++++
T Consensus 260 ~~v~IeaSGgI~~~ni~~ya~~-vD~isvGs~~~~a 294 (343)
T PRK08662 260 EHVKIFVSGGLDPERIRELRDV-VDGFGVGTYISFA 294 (343)
T ss_pred CCeEEEEeCCCCHHHHHHHHHh-CCEEEcCccccCC
Confidence 3478999999999999999999 9999999999864
|
|
| >PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4 | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.086 Score=46.71 Aligned_cols=179 Identities=15% Similarity=0.154 Sum_probs=107.0
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCC----HHHHHHcCcCCCCCeeEEEEecChhh-HHHH---HHHcCCCEEEE
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIG----PLVVDALRPVTDLPLDVHLMIVEPEQ-RVPD---FIKAGADIVSV 144 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G----~~~I~~ir~~t~~~idaHLmv~dp~~-~i~~---~~~aGAd~Itv 144 (281)
.+.++.+...|+|++=+|..||.=....... ..++..++........+-.-|+.+.. ++.. +.+.|+++|.+
T Consensus 11 ~~~~~~a~~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~l 90 (221)
T PF03328_consen 11 PKMLEKAAASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAAGSEIIVRVNSLDSPHIERDLEALDAGADGIVL 90 (221)
T ss_dssp HHHHHHHHTTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTSSSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEE
T ss_pred HHHHHHHHhcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccccccceecCCCCCcchhhhhhhhcccCCCeeec
Confidence 4567778889999999999998300011111 12333333222222334345665543 5566 89999999999
Q ss_pred cccccccccHHHHHHHHHHc---------CCcEEEEECCCCCHHHHHHhhc--cCCEEEEEe----ecCCCCCCccchhH
Q 023494 145 HCEQSSTIHLHRTLNQIKDL---------GAKAGVVLNPATSLSAIECVLD--VVDLVLIMS----VNPGFGGQSFIESQ 209 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik~~---------G~k~Glai~p~t~ie~~~~~l~--~vD~Ilvms----V~pG~~GQ~f~~~~ 209 (281)
+--. +.+++..+.+.++.. ..++.+.|.....++.+.+++. .+|.+.+.. ..-|..++.-.++.
T Consensus 91 P~ve-s~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~IET~~gv~~~~eI~a~~~v~~l~~G~~Dls~~lG~~~~~~~~~~ 169 (221)
T PF03328_consen 91 PKVE-SAEDARQAVAALRYPPAGRRGANGSTKIIPMIETPEGVENLEEIAAVPGVDGLFFGPADLSASLGIPGQPDHPEV 169 (221)
T ss_dssp TT---SHHHHHHHHHHHSHTTTCTTTHHCHSEEEEEE-SHHHHHTHHHHHTSTTEEEEEE-HHHHHHHTTTTTSTTSHHH
T ss_pred cccC-cHHHHHHHHHHHhhcccccccccCceEEEEeeccHHHHhCHHhhcccCCeeEEEeCcHHHHhhhccCCCCcchHH
Confidence 8543 356677777777654 2456666755455677777763 367776643 33466666656666
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEec-CCChhcHHHHHHcCCcEEEEcc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDG-GVGPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDG-GI~~e~i~~~~~aGAD~~VvGS 255 (281)
..-.+++.......| . -.+|+ -.+.++...+.+.|......|.
T Consensus 170 ~~a~~~v~~aa~a~g--~-~~i~~~~~~~~d~~~~~~~~~~~~~~G~ 213 (221)
T PF03328_consen 170 LEARSKVVLAARAAG--K-PAIDGVFPDFEDAEGLEAEGFRARALGF 213 (221)
T ss_dssp HHHHHHHHHHHHHTT--E-EEEEEEESSSSHHHHHHHHHHHCCEEEE
T ss_pred HHHHHHHHHHHHHcC--C-CeEEEeeCCHHHHHHHHHHHHHHHHHcc
Confidence 666666655555543 2 13555 4567788888888888777774
|
1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B .... |
| >TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.24 Score=45.89 Aligned_cols=157 Identities=18% Similarity=0.178 Sum_probs=89.9
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-----------cCCHHHHHHcCcCCCCCeeEEEEe
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-----------TIGPLVVDALRPVTDLPLDVHLMI 124 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-----------~~G~~~I~~ir~~t~~~idaHLmv 124 (281)
.-+..||...|...+.+..+.+++.+ +|.|.+-+- .|+. .+-.++++++|+.++.|+-+-+-.
T Consensus 91 ~pl~~qi~g~~~~~~~~~a~~~~~~~~~~d~ielN~~----cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~~pv~vKi~~ 166 (300)
T TIGR01037 91 TPLIASVYGSSVEEFAEVAEKLEKAPPYVDAYELNLS----CPHVKGGGIAIGQDPELSADVVKAVKDKTDVPVFAKLSP 166 (300)
T ss_pred CcEEEEeecCCHHHHHHHHHHHHhccCccCEEEEECC----CCCCCCCccccccCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 35889999999888888888888753 888766522 2332 223456778887777888775431
Q ss_pred --cChhhHHHHHHHcCCCEEEEccc---------cc-----------ccccH----HHHHHHHHHc-CCcEEEEECCCCC
Q 023494 125 --VEPEQRVPDFIKAGADIVSVHCE---------QS-----------STIHL----HRTLNQIKDL-GAKAGVVLNPATS 177 (281)
Q Consensus 125 --~dp~~~i~~~~~aGAd~Itvh~E---------a~-----------~~~~i----~~~l~~ik~~-G~k~Glai~p~t~ 177 (281)
.+...+.+.+.++|+|.+++|.- .. +.... .+.+..+++. ++ .-+...-=+.
T Consensus 167 ~~~~~~~~a~~l~~~G~d~i~v~nt~~~~~~~~~~~~~~~~~~~gg~sg~~~~~~~l~~v~~i~~~~~i-pvi~~GGI~s 245 (300)
T TIGR01037 167 NVTDITEIAKAAEEAGADGLTLINTLRGMKIDIKTGKPILANKTGGLSGPAIKPIALRMVYDVYKMVDI-PIIGVGGITS 245 (300)
T ss_pred ChhhHHHHHHHHHHcCCCEEEEEccCCccccccccCceeeCCCCccccchhhhHHHHHHHHHHHhcCCC-CEEEECCCCC
Confidence 12234566778999999999721 00 00000 1455566654 32 2223332245
Q ss_pred HHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHH-HHHHHHHhhhcCC
Q 023494 178 LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKK-ISDLRRMCLEKGV 225 (281)
Q Consensus 178 ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~k-I~~lr~l~~~~~~ 225 (281)
.+...+++. .+|.|.+-+. --..|..+.+ .+.+.+++.++|+
T Consensus 246 ~~da~~~l~~GAd~V~igr~------~l~~p~~~~~i~~~l~~~~~~~g~ 289 (300)
T TIGR01037 246 FEDALEFLMAGASAVQVGTA------VYYRGFAFKKIIEGLIAFLKAEGF 289 (300)
T ss_pred HHHHHHHHHcCCCceeecHH------HhcCchHHHHHHHHHHHHHHHcCC
Confidence 566666654 4898876322 1112334433 3455566655543
|
This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase. |
| >PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.62 Score=44.53 Aligned_cols=177 Identities=18% Similarity=0.165 Sum_probs=96.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE-----ecChh----h----HHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM-----IVEPE----Q----RVPDF 134 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm-----v~dp~----~----~i~~~ 134 (281)
.+.++++.+......+++-|-+| .+ ||.... ....++..+.+|+= ...+. . -++.+
T Consensus 47 ~l~~~K~lv~~~l~~~asaILld---~~------yG~~a~--~~~~~~~GLil~~e~tg~d~t~~gr~~~~~~~~sve~a 115 (340)
T PRK12858 47 DLVDFKLAVSEALTPYASAILLD---PE------YGLPAA--KVRDPNCGLLLSYEKTGYDATAPGRLPDLLDNWSVRRI 115 (340)
T ss_pred hHHHHHHHHHHHHhhCCCEEEEc---cc------cChhhh--cccCCCCCeEEEecccccccCCCCCCccccccccHHHH
Confidence 34455566666666678776554 32 344443 22334566777753 11111 1 25788
Q ss_pred HHcCCCEEEEccccccc----------ccHHHHHHHHHHcCCcEEEE--ECCCC------------CH----HHHHHhhc
Q 023494 135 IKAGADIVSVHCEQSST----------IHLHRTLNQIKDLGAKAGVV--LNPAT------------SL----SAIECVLD 186 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~----------~~i~~~l~~ik~~G~k~Gla--i~p~t------------~i----e~~~~~l~ 186 (281)
.+.|||.|.+|.--.+. ..+.++.++++++|+.+-+. ..|.. .. ...+...+
T Consensus 116 ~~~GAdAVk~lv~~~~d~~~~~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~~V~~a~r~~~~ 195 (340)
T PRK12858 116 KEAGADAVKLLLYYRPDEDDAINDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPEKVIKTMEEFSK 195 (340)
T ss_pred HHcCCCEEEEEEEeCCCcchHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHHHHHHHHHHHhh
Confidence 99999999998542211 13667788899999988775 22221 11 11222221
Q ss_pred ---cCCEEEE-EeecC----CCCCCc--c-chhHHHHHHHHHHHhhhcCCCCe-EEEecCCChh----cHHHHHHcCC--
Q 023494 187 ---VVDLVLI-MSVNP----GFGGQS--F-IESQVKKISDLRRMCLEKGVNPW-IEVDGGVGPK----NAYKVIEAGA-- 248 (281)
Q Consensus 187 ---~vD~Ilv-msV~p----G~~GQ~--f-~~~~l~kI~~lr~l~~~~~~~~~-I~VDGGI~~e----~i~~~~~aGA-- 248 (281)
.+|++=+ +++++ |+++.. + ..+..+..+++.+.. +.+ |...||++.+ ++....++||
T Consensus 196 ~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~-----~~P~vvlsgG~~~~~f~~~l~~A~~aGa~f 270 (340)
T PRK12858 196 PRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDAT-----DLPFIFLSAGVSPELFRRTLEFACEAGADF 270 (340)
T ss_pred hccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhC-----CCCEEEECCCCCHHHHHHHHHHHHHcCCCc
Confidence 2665532 22222 333211 0 111122233333321 234 5559999854 6677889999
Q ss_pred cEEEEcccccCC
Q 023494 249 NALVAGSAVFGA 260 (281)
Q Consensus 249 D~~VvGSaIf~a 260 (281)
.++.+|+++|+.
T Consensus 271 ~Gvl~GRniwq~ 282 (340)
T PRK12858 271 SGVLCGRATWQD 282 (340)
T ss_pred cchhhhHHHHhh
Confidence 999999999964
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.043 Score=49.56 Aligned_cols=79 Identities=15% Similarity=0.240 Sum_probs=60.2
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|+|..+.|-+ .+|=+.++-+.....|+. -+++-+++..+.+ .+|+.|.|||+ .+++++++.+|||-+-
T Consensus 30 GDpVelA~~Y~e~GADElvFlDItAs~~gr~---~~~~vv~r~A~~v-----fiPltVGGGI~s~eD~~~ll~aGADKVS 101 (256)
T COG0107 30 GDPVELAKRYNEEGADELVFLDITASSEGRE---TMLDVVERVAEQV-----FIPLTVGGGIRSVEDARKLLRAGADKVS 101 (256)
T ss_pred CChHHHHHHHHHcCCCeEEEEecccccccch---hHHHHHHHHHhhc-----eeeeEecCCcCCHHHHHHHHHcCCCeee
Confidence 478888888765 489988887766555643 3455566655543 37899999999 9999999999999999
Q ss_pred EcccccCCC
Q 023494 253 AGSAVFGAK 261 (281)
Q Consensus 253 vGSaIf~a~ 261 (281)
+.|+-...+
T Consensus 102 INsaAv~~p 110 (256)
T COG0107 102 INSAAVKDP 110 (256)
T ss_pred eChhHhcCh
Confidence 998755433
|
|
| >cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.057 Score=49.66 Aligned_cols=86 Identities=20% Similarity=0.193 Sum_probs=63.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC----------CHHHHHHcCcCCCCCeeEEEEecC
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI----------GPLVVDALRPVTDLPLDVHLMIVE 126 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~----------G~~~I~~ir~~t~~~idaHLmv~d 126 (281)
...+.+||...+..++.+..+.+.+.|+|.|++.+- .|+... -.++++++|+.+++|+-+.+-...
T Consensus 98 ~~pvi~si~g~~~~~~~~~a~~~~~~G~d~ielN~~----cP~~~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~~~ 173 (289)
T cd02810 98 GQPLIASVGGSSKEDYVELARKIERAGAKALELNLS----CPNVGGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSPYF 173 (289)
T ss_pred CCeEEEEeccCCHHHHHHHHHHHHHhCCCEEEEEcC----CCCCCCCcccccCHHHHHHHHHHHHHccCCCEEEEeCCCC
Confidence 456889999888888889999999999999988753 344321 224677788777788888666532
Q ss_pred h----hhHHHHHHHcCCCEEEEcc
Q 023494 127 P----EQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 127 p----~~~i~~~~~aGAd~Itvh~ 146 (281)
. .+.++.+.++|+|++++|.
T Consensus 174 ~~~~~~~~a~~l~~~Gad~i~~~~ 197 (289)
T cd02810 174 DLEDIVELAKAAERAGADGLTAIN 197 (289)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEEc
Confidence 2 3456778899999999984
|
DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of |
| >COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.072 Score=48.16 Aligned_cols=189 Identities=21% Similarity=0.280 Sum_probs=108.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh-----h---hHHHHHHHc-C
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP-----E---QRVPDFIKA-G 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp-----~---~~i~~~~~a-G 138 (281)
-+.+.+..-+.+...|.+.+-+=+---.- .-.-+..+.+.|+.. .+.+.=+.. + +..++..++ +
T Consensus 25 ky~s~~~~~~av~asg~~ivTvAlRR~~~--~~~~~~~~l~~l~~~-----~~~~LPNTaGc~taeEAv~tArlARE~~~ 97 (262)
T COG2022 25 KYPSPAVLAEAVRASGSEIVTVALRRVNA--TRPGGDGILDLLIPL-----GVTLLPNTAGCRTAEEAVRTARLAREALG 97 (262)
T ss_pred CCCCHHHHHHHHHhcCCceEEEEEEeecc--cCCCcchHHHHhhhc-----CcEeCCCccccCCHHHHHHHHHHHHHHcc
Confidence 34455555556667788877664432210 112345555555432 222222222 2 223344454 4
Q ss_pred CCEEEEccccc---ccccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhccCCEEEEEeec-C-CCCCCcc-chhHHH
Q 023494 139 ADIVSVHCEQS---STIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVN-P-GFGGQSF-IESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~---~~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~~vD~IlvmsV~-p-G~~GQ~f-~~~~l~ 211 (281)
-|||-+-.-.. -.++..++++.++.. ++=|...-|-+ +.-.+.+-+..+-...+|.-- | | +|+.. .++.+
T Consensus 98 t~wiKlEVi~d~~tLlPD~~etl~Aae~L-v~eGF~VlPY~~dD~v~arrLee~GcaavMPl~aPIG-Sg~G~~n~~~l- 174 (262)
T COG2022 98 TNWIKLEVIGDEKTLLPDPIETLKAAEQL-VKEGFVVLPYTTDDPVLARRLEEAGCAAVMPLGAPIG-SGLGLQNPYNL- 174 (262)
T ss_pred CCeEEEEEecCCcccCCChHHHHHHHHHH-HhCCCEEeeccCCCHHHHHHHHhcCceEecccccccc-CCcCcCCHHHH-
Confidence 68876553211 134566777776643 23333333332 222344555666666777542 2 4 34433 34443
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.+++.. ++++.||-||. +.++....+.|+|.+-+-++|-.+.||...++.|+..
T Consensus 175 --~iiie~a-----~VPviVDAGiG~pSdAa~aMElG~DaVL~NTAiA~A~DPv~MA~Af~~A 230 (262)
T COG2022 175 --EIIIEEA-----DVPVIVDAGIGTPSDAAQAMELGADAVLLNTAIARAKDPVAMARAFALA 230 (262)
T ss_pred --HHHHHhC-----CCCEEEeCCCCChhHHHHHHhcccceeehhhHhhccCChHHHHHHHHHH
Confidence 3344332 58999999999 8899999999999999999999999999888888763
|
|
| >PRK07565 dihydroorotate dehydrogenase 2; Reviewed | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.47 Score=44.85 Aligned_cols=87 Identities=18% Similarity=0.242 Sum_probs=61.3
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--c-------CCHHHHHHcCcCCCCCeeEEEEe--cC
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--T-------IGPLVVDALRPVTDLPLDVHLMI--VE 126 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~-------~G~~~I~~ir~~t~~~idaHLmv--~d 126 (281)
..+..||...+...+.+..+.++++|+|.+++-+- ..|+- . .-.+.++++|+.+++|+.+-|-- .+
T Consensus 102 ~pvi~sI~g~~~~e~~~~a~~~~~agad~ielN~s---cpp~~~~~~g~~~~~~~~eil~~v~~~~~iPV~vKl~p~~~~ 178 (334)
T PRK07565 102 IPVIASLNGSSAGGWVDYARQIEQAGADALELNIY---YLPTDPDISGAEVEQRYLDILRAVKSAVSIPVAVKLSPYFSN 178 (334)
T ss_pred CcEEEEeccCCHHHHHHHHHHHHHcCCCEEEEeCC---CCCCCCCCccccHHHHHHHHHHHHHhccCCcEEEEeCCCchh
Confidence 56888898877777778888888999999988541 11111 0 11356788888778898886432 13
Q ss_pred hhhHHHHHHHcCCCEEEEccc
Q 023494 127 PEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 127 p~~~i~~~~~aGAd~Itvh~E 147 (281)
...+.+.+.++|+|+|++|.-
T Consensus 179 ~~~~a~~l~~~G~dgI~~~n~ 199 (334)
T PRK07565 179 LANMAKRLDAAGADGLVLFNR 199 (334)
T ss_pred HHHHHHHHHHcCCCeEEEECC
Confidence 345667788999999999853
|
|
| >PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.59 Score=44.76 Aligned_cols=186 Identities=13% Similarity=0.103 Sum_probs=113.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
.|+..+.-.++.+++.+...| +-+-.+. |.+ ..+-..+++...+.. ..|+-+||==......+..++++|.+.|-
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-iq~s~~~~~~~g-~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM 103 (347)
T PRK09196 26 NNLEQVQAIMEAADETDSPVI-LQASAGARKYAG-EPFLRHLILAAVEEYPHIPVVMHQDHGNSPATCQRAIQLGFTSVM 103 (347)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EECCccHhhhCC-HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCCEEE
Confidence 344455566777888877765 5554442 222 122233444444433 47999988554434567889999987776
Q ss_pred Eccccc-------c----cccHHHHHHHHHHcCCcE----EEE--E--------------------CCCCCHHHHHHhhc
Q 023494 144 VHCEQS-------S----TIHLHRTLNQIKDLGAKA----GVV--L--------------------NPATSLSAIECVLD 186 (281)
Q Consensus 144 vh~Ea~-------~----~~~i~~~l~~ik~~G~k~----Gla--i--------------------~p~t~ie~~~~~l~ 186 (281)
+=.-.. + ...-.++++.++..|+.+ |-. . ..-|..+...++.+
T Consensus 104 iDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~~~~~~T~PeeA~~Fv~ 183 (347)
T PRK09196 104 MDGSLKADGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLSHDQLLTDPEEAADFVK 183 (347)
T ss_pred ecCCCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccchhhcCCCHHHHHHHHH
Confidence 654321 1 112346777788888654 221 1 01366777888876
Q ss_pred --cCCEEE--EEeecCCCCCCccch----hHHHHHHHHHHHhhhcCCCCeEEEecCC-----------------------
Q 023494 187 --VVDLVL--IMSVNPGFGGQSFIE----SQVKKISDLRRMCLEKGVNPWIEVDGGV----------------------- 235 (281)
Q Consensus 187 --~vD~Il--vmsV~pG~~GQ~f~~----~~l~kI~~lr~l~~~~~~~~~I~VDGGI----------------------- 235 (281)
.+|.+. +.++| |..-+...| --+++|+++++.++ ++++..=||=
T Consensus 184 ~TgvD~LAvaiGT~H-G~Yk~~~~p~~~~LdfdrL~eI~~~v~----~vPLVLHGgSG~~~~~~~~~~~~g~~~~~~~G~ 258 (347)
T PRK09196 184 KTQVDALAIAIGTSH-GAYKFTRKPTGDVLAIDRIKEIHARLP----NTHLVMHGSSSVPQELLDIINEYGGDMPETYGV 258 (347)
T ss_pred HhCcCeEhhhhcccc-CCCCCCCCCChhhccHHHHHHHHhcCC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCC
Confidence 488764 34555 322111122 23677887777652 3678887776
Q ss_pred ChhcHHHHHHcCCcEEEEcccccC
Q 023494 236 GPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 236 ~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..|.++++++.|+.-|=+++.+..
T Consensus 259 ~~e~i~~ai~~GI~KINi~Tdl~~ 282 (347)
T PRK09196 259 PVEEIQEGIKHGVRKVNIDTDLRL 282 (347)
T ss_pred CHHHHHHHHHCCCceEEeChHHHH
Confidence 458999999999999999998863
|
|
| >cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily | Back alignment and domain information |
|---|
Probab=95.58 E-value=1.1 Score=40.05 Aligned_cols=141 Identities=21% Similarity=0.207 Sum_probs=81.2
Q ss_pred HHHHHHHcCCCEEEEccccccc------ccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCC
Q 023494 130 RVPDFIKAGADIVSVHCEQSST------IHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGF 200 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~------~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~ 200 (281)
+++.+.++|++.|-+..-. +. ++..+.++.+++.+ .++.. +.++ ..+.++...+. +|.|.+.. ++.
T Consensus 24 i~~~L~~~GV~~IEvg~~~-~~~~~p~~~~~~~~i~~l~~~~~~~~~~~-l~~~-~~~~i~~a~~~g~~~i~i~~--~~s 98 (265)
T cd03174 24 IAEALDEAGVDSIEVGSGA-SPKAVPQMEDDWEVLRAIRKLVPNVKLQA-LVRN-REKGIERALEAGVDEVRIFD--SAS 98 (265)
T ss_pred HHHHHHHcCCCEEEeccCc-CccccccCCCHHHHHHHHHhccCCcEEEE-EccC-chhhHHHHHhCCcCEEEEEE--ecC
Confidence 5677888999999888654 24 56788999999887 44433 3322 14455555553 67776542 121
Q ss_pred CC------CccchhHHHHHHHHHHHhhhcCCCCeEEE--ecC--CChh----cHHHHHHcCCcEEEEccc--ccCCCCHH
Q 023494 201 GG------QSFIESQVKKISDLRRMCLEKGVNPWIEV--DGG--VGPK----NAYKVIEAGANALVAGSA--VFGAKDYA 264 (281)
Q Consensus 201 ~G------Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V--DGG--I~~e----~i~~~~~aGAD~~VvGSa--If~a~dp~ 264 (281)
.. ..-.++.++++.+..+...+.|..+.+.+ ..+ .+++ -++.+.++|+|.+.+--. ....++..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~ 178 (265)
T cd03174 99 ETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGCKTDPEYVLEVAKALEEAGADEISLKDTVGLATPEEVA 178 (265)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCCCCCHHHHHHHHHHHHHcCCCEEEechhcCCcCHHHHH
Confidence 10 01123356666666666666665544443 344 5544 445667899999887622 22233445
Q ss_pred HHHHHHHHhcC
Q 023494 265 EAIKGIKTSKR 275 (281)
Q Consensus 265 ~~~~~l~~~~~ 275 (281)
+.++.+++...
T Consensus 179 ~li~~l~~~~~ 189 (265)
T cd03174 179 ELVKALREALP 189 (265)
T ss_pred HHHHHHHHhCC
Confidence 55556655443
|
The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". |
| >PLN02623 pyruvate kinase | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.22 Score=50.60 Aligned_cols=140 Identities=17% Similarity=0.178 Sum_probs=94.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCccc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFI 206 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~ 206 (281)
.++...+.|+|+|.+-.-- +.+++.++-+.+++.|..+.+ -|.....++.+++++..+|.|++-.-+-|.. | .
T Consensus 283 di~f~~~~~vD~ialSFVr-~a~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~g~DgImIgrgDLgvelg---~ 358 (581)
T PLN02623 283 DIKFGVENKVDFYAVSFVK-DAQVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIITASDGAMVARGDLGAELP---I 358 (581)
T ss_pred HHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHHhCCEEEECcchhhhhcC---c
Confidence 3555678999999988765 356777788888877766554 4554556788999999999998743332221 2 1
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEec--------CCCh-----hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDG--------GVGP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDG--------GI~~-----e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
++.....+++.+.+.+.| .++.+.. .-++ ..+...+..|+|.+.+|+...--.-|.++++.|.+.
T Consensus 359 ~~v~~~qk~Ii~~~~~~g--KpvivaTQMLESMi~~~~PTRAEv~Dva~av~dG~d~vmLs~Eta~G~yPveaV~~m~~I 436 (581)
T PLN02623 359 EEVPLLQEEIIRRCRSMG--KPVIVATNMLESMIVHPTPTRAEVSDIAIAVREGADAVMLSGETAHGKFPLKAVKVMHTV 436 (581)
T ss_pred HHHHHHHHHHHHHHHHhC--CCEEEECchhhhcccCCCCCchhHHHHHHHHHcCCCEEEecchhhcCcCHHHHHHHHHHH
Confidence 555555566666655544 3443332 1234 378888999999999998876667888888888775
Q ss_pred cC
Q 023494 274 KR 275 (281)
Q Consensus 274 ~~ 275 (281)
+.
T Consensus 437 ~~ 438 (581)
T PLN02623 437 AL 438 (581)
T ss_pred HH
Confidence 43
|
|
| >cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.44 Score=41.86 Aligned_cols=158 Identities=19% Similarity=0.212 Sum_probs=90.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh---------hHHHHHHHcCCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE---------QRVPDFIKAGAD 140 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~---------~~i~~~~~aGAd 140 (281)
++++.++.+.+.|++.+-+ .|.+++..++. .+..+.++.-+.-|. .-++.+.+.|||
T Consensus 18 ~i~~~~~~a~~~~~~av~v-------------~p~~v~~~~~~l~~~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~GAd 84 (203)
T cd00959 18 DIRKLCDEAKEYGFAAVCV-------------NPCFVPLAREALKGSGVKVCTVIGFPLGATTTEVKVAEAREAIADGAD 84 (203)
T ss_pred HHHHHHHHHHHcCCCEEEE-------------cHHHHHHHHHHcCCCCcEEEEEEecCCCCCcHHHHHHHHHHHHHcCCC
Confidence 4444555555656665533 24555554442 234567777776553 126678889999
Q ss_pred EEEEccccc---c--cccHHHHHHHHHHc--CCcEEE--EECCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCccc
Q 023494 141 IVSVHCEQS---S--TIHLHRTLNQIKDL--GAKAGV--VLNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 141 ~Itvh~Ea~---~--~~~i~~~l~~ik~~--G~k~Gl--ai~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~ 206 (281)
-|-++..-. + .+...+.+..+++. |+.+-+ ....- ..+.+..... .+|+|=. ..||.. .
T Consensus 85 evdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l-~~~~i~~a~ria~e~GaD~IKT---sTG~~~---~ 157 (203)
T cd00959 85 EIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLL-TDEEIIKACEIAIEAGADFIKT---STGFGP---G 157 (203)
T ss_pred EEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCC-CHHHHHHHHHHHHHhCCCEEEc---CCCCCC---C
Confidence 999985431 0 12233444444443 433322 22222 2233333322 2788843 345532 3
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
+.+++.++.+++.++ .+++|-+.|||+ .+.+.+++++|+|-+
T Consensus 158 ~at~~~v~~~~~~~~---~~v~ik~aGGikt~~~~l~~~~~g~~ri 200 (203)
T cd00959 158 GATVEDVKLMKEAVG---GRVGVKAAGGIRTLEDALAMIEAGATRI 200 (203)
T ss_pred CCCHHHHHHHHHHhC---CCceEEEeCCCCCHHHHHHHHHhChhhc
Confidence 356777777777765 247899999999 778889999999854
|
DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction. |
| >PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.15 Score=51.04 Aligned_cols=120 Identities=18% Similarity=0.145 Sum_probs=76.2
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--hHHHHHHHcCCCEEEEccccc-
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQS- 149 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--~~i~~~~~aGAd~Itvh~Ea~- 149 (281)
.+.++.+.++|+|.||+|.-+|+-. +-.+.+++||+..+ ++.++.-|.. +-...+.++|||.|-+.....
T Consensus 243 ~~~~~~l~~ag~d~i~id~a~G~s~----~~~~~i~~ik~~~~---~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs 315 (495)
T PTZ00314 243 IERAAALIEAGVDVLVVDSSQGNSI----YQIDMIKKLKSNYP---HVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGS 315 (495)
T ss_pred HHHHHHHHHCCCCEEEEecCCCCch----HHHHHHHHHHhhCC---CceEEECCcCCHHHHHHHHHcCCCEEEECCcCCc
Confidence 5667888899999999999888632 22568899887521 3445554433 246678899999997632110
Q ss_pred ---c-------ccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC
Q 023494 150 ---S-------TIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199 (281)
Q Consensus 150 ---~-------~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG 199 (281)
+ .++ +.++.+.+++.|+.+...=.-.|+-+..+.+.-.+|.|++.+...|
T Consensus 316 ~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vIadGGi~~~~di~kAla~GA~~Vm~G~~~a~ 378 (495)
T PTZ00314 316 ICITQEVCAVGRPQASAVYHVARYARERGVPCIADGGIKNSGDICKALALGADCVMLGSLLAG 378 (495)
T ss_pred ccccchhccCCCChHHHHHHHHHHHhhcCCeEEecCCCCCHHHHHHHHHcCCCEEEECchhcc
Confidence 0 112 2345566666675433321224677777777777999988665544
|
|
| >COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.46 Score=43.15 Aligned_cols=171 Identities=19% Similarity=0.265 Sum_probs=106.0
Q ss_pred HHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
++.+-.+|.||+-+| |.-.||- ...++.+|+.. ...+=.|..-+.+|. .++++.+.||..+.++.-. +.++
T Consensus 31 ~Ei~A~aGfDwl~iD---~EHapnd--~~sl~~qL~a~~~~~~~pvVR~p~g~~~-~Ikq~LD~GAqtlliPmV~-s~eq 103 (255)
T COG3836 31 AEILATAGFDWLLID---GEHAPND--LQSLLHQLQAVAAYASPPVVRPPVGDPV-MIKQLLDIGAQTLLIPMVD-TAEQ 103 (255)
T ss_pred HHHHHhcCCCEEEec---ccccCcc--HHHHHHHHHHhhccCCCCeeeCCCCCHH-HHHHHHccccceeeeeccC-CHHH
Confidence 445667899999776 4334653 22334444432 234445555566655 6888999999999988654 2344
Q ss_pred HHHHHHHHH---------------------------HcCCcEE--EEECCCCCHHHHHHhhc--cCCEEEEEee----cC
Q 023494 154 LHRTLNQIK---------------------------DLGAKAG--VVLNPATSLSAIECVLD--VVDLVLIMSV----NP 198 (281)
Q Consensus 154 i~~~l~~ik---------------------------~~G~k~G--lai~p~t~ie~~~~~l~--~vD~IlvmsV----~p 198 (281)
.+.+++..| ..+-... +-+...+-++.+..++. .+|.|.+... .-
T Consensus 104 Ar~~V~A~rYPP~G~Rgvg~~~arAsr~~~i~dyl~~An~~~~~lvqiEtr~gl~nLDaIaaveGVDgvFiGPaDLaas~ 183 (255)
T COG3836 104 ARQAVAATRYPPLGERGVGSALARASRFGRIADYLAQANDEICLLVQIETRAGLDNLDAIAAVEGVDGVFIGPADLAASL 183 (255)
T ss_pred HHHHHHhccCCCCCccccchhhhhhhhcCCHHHHHHhcccceEEEEEEccHHHHHHHHHHHccCCCCeEEECHHHHHHHc
Confidence 444443322 2222222 33443445566666654 4888887533 34
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
|.-|++-.|++-+-|+.+...+..+|...-| =-.+++.++.+.+.|+..+++|+.
T Consensus 184 G~~gn~~hpeV~~aI~~~~~~i~aaGKaagi---l~~~p~~a~~yl~lGa~fvavG~D 238 (255)
T COG3836 184 GHLGNPGHPEVQAAIEHIIARIRAAGKAAGI---LAADPADARRYLALGATFVAVGSD 238 (255)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHhcCCcccc---ccCCHHHHHHHHHhCCeEEEEecc
Confidence 6677777888888888877777665543211 224578899999999999999954
|
|
| >cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3 | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.2 Score=47.76 Aligned_cols=39 Identities=18% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCCCCHH
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYA 264 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a~dp~ 264 (281)
++++.+-|||+ ++.+.++++.| +|.+-+|+.+...++.-
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~~D~V~~gR~~ladP~l~ 325 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGHADMVGMTRAHIADPHLV 325 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCCCCeeeecHHhHhCccHH
Confidence 36888999995 89999999876 99999999999877654
|
Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase. |
| >cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.95 Score=38.08 Aligned_cols=159 Identities=18% Similarity=0.217 Sum_probs=93.4
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEee---eCccccccc--CCHHHHHHcCcCCCCCeeEEEEecCh----h-hHHHHHHHcC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVM---DGRFVPNIT--IGPLVVDALRPVTDLPLDVHLMIVEP----E-QRVPDFIKAG 138 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDIm---DG~fvpn~~--~G~~~I~~ir~~t~~~idaHLmv~dp----~-~~i~~~~~aG 138 (281)
+-|....++.+.+.|++++++||. ||.++-... -=.++++.+++ +..+.++++-.+. . ..++.+.+.|
T Consensus 12 pent~~a~~~a~~~g~~~iE~Dv~~tkDg~~vv~Hdi~tL~e~l~~~~~--~~~i~leiK~~~~~~~~~~~l~~~i~~~~ 89 (189)
T cd08556 12 PENTLAAFRKALEAGADGVELDVQLTKDGVLVVIHDIPTLEEVLELVKG--GVGLNIELKEPTRYPGLEAKVAELLREYG 89 (189)
T ss_pred CchHHHHHHHHHHcCCCEEEEEeeEcCCCCEEEEcCCCCHHHHHHhccc--CcEEEEEECCCCCchhHHHHHHHHHHHcC
Confidence 357778889999999999999987 886553211 11345555554 5678888888642 1 2344556665
Q ss_pred -CCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHH--HhhccCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 139 -ADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIE--CVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 139 -Ad~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~--~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
.+.+.+.... .+.++.+++. ++++|+.+......+... .....++.+. +.+.. ..+ +.+
T Consensus 90 ~~~~v~i~s~~------~~~l~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-----~~~~~--~~~---~~i 153 (189)
T cd08556 90 LEERVVVSSFD------HEALRALKELDPEVPTGLLVDKPPLDPLLAELARALGADAVN-----PHYKL--LTP---ELV 153 (189)
T ss_pred CcCCEEEEeCC------HHHHHHHHHhCCCCcEEEEeecCcccchhhhHHHhcCCeEEc-----cChhh--CCH---HHH
Confidence 5777777652 1456666664 678888776544433221 1111234332 22111 222 233
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
+.+++ +| .++.+-+ ++ .+.+..+.+.|+|.++
T Consensus 154 ~~~~~----~g--~~v~~wt-vn~~~~~~~~~~~GVdgI~ 186 (189)
T cd08556 154 RAAHA----AG--LKVYVWT-VNDPEDARRLLALGVDGII 186 (189)
T ss_pred HHHHH----cC--CEEEEEc-CCCHHHHHHHHHCCCCEEe
Confidence 33333 33 4444443 44 8899999999999986
|
The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho |
| >PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.33 Score=44.60 Aligned_cols=176 Identities=16% Similarity=0.213 Sum_probs=93.8
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc--CC
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GA 139 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a--GA 139 (281)
|..-|+....+..+.+.+.|+|+| ||==+ ..+.- .-=..+|+.+++.++.|+-+ -+.+|. .++.+.++ |+
T Consensus 19 ~~~~d~~~i~~~A~~~~~~GAdiI--DVg~~-~~~~eE~~r~~~~v~~l~~~~~~plsI--DT~~~~-v~eaaL~~~~G~ 92 (261)
T PRK07535 19 IEAKDAAFIQKLALKQAEAGADYL--DVNAG-TAVEEEPETMEWLVETVQEVVDVPLCI--DSPNPA-AIEAGLKVAKGP 92 (261)
T ss_pred HHcCCHHHHHHHHHHHHHCCCCEE--EECCC-CCchhHHHHHHHHHHHHHHhCCCCEEE--eCCCHH-HHHHHHHhCCCC
Confidence 344577677777777788899986 43322 11110 11122455666555666543 445655 56667776 98
Q ss_pred CEEEE-cccccccccHHHHHHHHHHcCCcEEEEEC--CCCC------HHHHHHhhcc-----C--CEEEEEeecCCCC--
Q 023494 140 DIVSV-HCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS------LSAIECVLDV-----V--DLVLIMSVNPGFG-- 201 (281)
Q Consensus 140 d~Itv-h~Ea~~~~~i~~~l~~ik~~G~k~Glai~--p~t~------ie~~~~~l~~-----v--D~IlvmsV~pG~~-- 201 (281)
++|-= -.+ .....+.+..++++|+.+.+... .++| ++.+++.++. + +-|+ ++||++
T Consensus 93 ~iINsIs~~---~~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~Ii---lDPgi~~~ 166 (261)
T PRK07535 93 PLINSVSAE---GEKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIY---IDPLVLPL 166 (261)
T ss_pred CEEEeCCCC---CccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEE---EeCCCCcc
Confidence 87632 222 11245778888999998877544 2233 2333333321 3 2333 388875
Q ss_pred --CCccchhHHHHHHHHHHHhhhcCCCCeEE---EecCC------ChhcHHHHHHcCCcEEEE
Q 023494 202 --GQSFIESQVKKISDLRRMCLEKGVNPWIE---VDGGV------GPKNAYKVIEAGANALVA 253 (281)
Q Consensus 202 --GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~---VDGGI------~~e~i~~~~~aGAD~~Vv 253 (281)
++...-++++.++.+++.++ +..+.+. +-.|+ |.-=+..+.++|.|..|+
T Consensus 167 ~~~~~~~~~~l~~i~~l~~~~p--g~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~~aI~ 227 (261)
T PRK07535 167 SAAQDAGPEVLETIRRIKELYP--KVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMDSAIL 227 (261)
T ss_pred cCChHHHHHHHHHHHHHHHhCC--CCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCCEEee
Confidence 22233455777777776542 2222221 12333 222344568899886655
|
|
| >TIGR00742 yjbN tRNA dihydrouridine synthase A | Back alignment and domain information |
|---|
Probab=95.45 E-value=0.4 Score=45.31 Aligned_cols=136 Identities=19% Similarity=0.161 Sum_probs=87.3
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-------------cCCHHHHHHcCcCCCCCeeEE
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-------------TIGPLVVDALRPVTDLPLDVH 121 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-------------~~G~~~I~~ir~~t~~~idaH 121 (281)
..+.-+...|...|+..+.++.+.+.+.|+|.| |+-=|--.++. .+=.++++++++..+.|+-|-
T Consensus 52 ~~e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~I--DlN~GCP~~~v~~~g~Gs~Ll~~p~~~~~iv~av~~~~~~PVsvK 129 (318)
T TIGR00742 52 PEESPVALQLGGSDPNDLAKCAKIAEKRGYDEI--NLNVGCPSDRVQNGNFGACLMGNADLVADCVKAMQEAVNIPVTVK 129 (318)
T ss_pred CCCCcEEEEEccCCHHHHHHHHHHHHhCCCCEE--EEECCCCHHHhCCCCeehHhhcCHHHHHHHHHHHHHHhCCCeEEE
Confidence 345568899999999999999999998899875 44334212211 112455667777677888886
Q ss_pred EEe--cCh------hhHHHHHHHcCCCEEEEccccc-----c-cc-------cHHHHHHHHHHcCCcEEEEECCC-CCHH
Q 023494 122 LMI--VEP------EQRVPDFIKAGADIVSVHCEQS-----S-TI-------HLHRTLNQIKDLGAKAGVVLNPA-TSLS 179 (281)
Q Consensus 122 Lmv--~dp------~~~i~~~~~aGAd~Itvh~Ea~-----~-~~-------~i~~~l~~ik~~G~k~Glai~p~-t~ie 179 (281)
+-+ .+. .++++.+.++|++.+++|.-.. + .. +. +.+..+++.--.+=+..|-+ ...+
T Consensus 130 iR~g~~~~~~~~~~~~~~~~l~~~G~~~itvHgRt~~~qg~sg~~~~~~~~~~~-~~i~~vk~~~~~ipVi~NGdI~s~~ 208 (318)
T TIGR00742 130 HRIGIDPLDSYEFLCDFVEIVSGKGCQNFIVHARKAWLSGLSPKENREIPPLRY-ERVYQLKKDFPHLTIEINGGIKNSE 208 (318)
T ss_pred EecCCCCcchHHHHHHHHHHHHHcCCCEEEEeCCchhhcCCCccccccCCchhH-HHHHHHHHhCCCCcEEEECCcCCHH
Confidence 655 221 2456778899999999998631 0 00 12 34555655321222333433 5667
Q ss_pred HHHHhhccCCEEEE
Q 023494 180 AIECVLDVVDLVLI 193 (281)
Q Consensus 180 ~~~~~l~~vD~Ilv 193 (281)
.+.+.+..+|.|++
T Consensus 209 da~~~l~g~dgVMi 222 (318)
T TIGR00742 209 QIKQHLSHVDGVMV 222 (318)
T ss_pred HHHHHHhCCCEEEE
Confidence 77777778998876
|
Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. |
| >PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.78 Score=42.77 Aligned_cols=182 Identities=15% Similarity=0.186 Sum_probs=112.3
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
.|+..+.-.++.+++.+...| +-+-.++. . -.|.+ +++.+.+..+.|+-+||==......+..++++|.+.|
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-iq~~~~~~-~--~~g~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12737 26 HNLETLQVVVETAAELRSPVI-LAGTPGTF-S--YAGTDYIVAIAEVAARKYNIPLALHLDHHEDLDDIKKKVRAGIRSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcCccHH-h--hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeE
Confidence 344455566777788777765 44443321 0 12323 3444444456899999854444457888999998866
Q ss_pred EEcccccc----cccHHHHHHHHHHcCCcE----EEEE----------C--CCCCHHHHHHhhcc--CCEEEE--EeecC
Q 023494 143 SVHCEQSS----TIHLHRTLNQIKDLGAKA----GVVL----------N--PATSLSAIECVLDV--VDLVLI--MSVNP 198 (281)
Q Consensus 143 tvh~Ea~~----~~~i~~~l~~ik~~G~k~----Glai----------~--p~t~ie~~~~~l~~--vD~Ilv--msV~p 198 (281)
-+=+-..+ ...-.++.+.++..|+-+ |-.= + .-|..+..+++.+. +|.+.+ .++|-
T Consensus 102 MiDgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK12737 102 MIDGSHLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAAAEFVERTGIDSLAVAIGTAHG 181 (284)
T ss_pred EecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHHHHhCCCEEeeccCcccc
Confidence 55433222 123457778888888755 2110 0 13566777888764 887654 34442
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-+.+.+ .-.+++|+++++.. ++++..=|| +..+.++++++.|+.-+=+++.+..
T Consensus 182 ~y~~~p--~Ld~~~L~~I~~~~-----~iPLVlHGgSG~~~e~~~kai~~Gi~KiNi~T~l~~ 237 (284)
T PRK12737 182 LYKGEP--KLDFERLAEIREKV-----SIPLVLHGASGVPDEDVKKAISLGICKVNVATELKI 237 (284)
T ss_pred ccCCCC--cCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHCCCeEEEeCcHHHH
Confidence 222311 12367777777765 367877775 4578999999999999999998853
|
|
| >PRK06267 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.43 E-value=0.72 Score=44.03 Aligned_cols=182 Identities=14% Similarity=0.090 Sum_probs=97.4
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
.++.++.++++.+.+.|++.+++ .|.+......=.++++.+++..+..+-+.+-..++... .....+| ++.-.
T Consensus 63 ~s~eeI~eea~~~~~~Gv~~~~l---sgG~~~~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~-~~~~l~G---v~g~~ 135 (350)
T PRK06267 63 RRVESILAEAILMKRIGWKLEFI---SGGYGYTTEEINDIAEMIAYIQGCKQYLNVGIIDFLNI-NLNEIEG---VVGAV 135 (350)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEE---ecCCCCCHHHHHHHHHHHHHhhCCceEeecccCCHHHH-hhccccC---ceeee
Confidence 45667777788888888886553 34443222111234455555444334444444554322 1122233 33323
Q ss_pred ccc------------ccccHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHhhc-----cCCEEEEE--eecCCCC--CC
Q 023494 147 EQS------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD-----VVDLVLIM--SVNPGFG--GQ 203 (281)
Q Consensus 147 Ea~------------~~~~i~~~l~~ik~~G~k~--Glai~p~t~ie~~~~~l~-----~vD~Ilvm--sV~pG~~--GQ 203 (281)
|+. +.++..+.++.+++.|+++ |+.+.++...+.+.+.+. .+|.+.+. .-.||.. ++
T Consensus 136 ET~~~~~~~~i~~~~s~ed~~~~l~~ak~aGi~v~~g~IiGlgEt~ed~~~~l~~l~~l~~d~v~~~~L~P~pGTp~~~~ 215 (350)
T PRK06267 136 ETVNPKLHREICPGKPLDKIKEMLLKAKDLGLKTGITIILGLGETEDDIEKLLNLIEELDLDRITFYSLNPQKGTIFENK 215 (350)
T ss_pred ecCCHHHHHhhCCCCCHHHHHHHHHHHHHcCCeeeeeEEEeCCCCHHHHHHHHHHHHHcCCCEEEEEeeeECCCCcCCCC
Confidence 321 1334667888899999995 456644544555554332 26766443 3456642 22
Q ss_pred c-c-chhHHHHHHHHHHHhhhcCCCCeEEEecCC--ChhcHHHHHHcCCcEE----EEcccccCC
Q 023494 204 S-F-IESQVKKISDLRRMCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANAL----VAGSAVFGA 260 (281)
Q Consensus 204 ~-f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI--~~e~i~~~~~aGAD~~----VvGSaIf~a 260 (281)
+ . ..+.++-|.-.|-++++ ..| +.||- +...+....-+|||.+ ..|-+++..
T Consensus 216 ~~~s~~e~lr~ia~~Rl~lP~----~~I-~~~~~~~~l~~~~~~~~aGaN~i~~~p~~g~ylt~~ 275 (350)
T PRK06267 216 PSVTTLEYMNWVSSVRLNFPK----IKI-ITGTWVDKLTNIGPLIMSGSNVITKFPLFSMYGTKE 275 (350)
T ss_pred CCCCHHHHHHHHHHHHHHCCC----CCc-chhhHhHhcchhhHHhhcCcceeeccchhccCcccC
Confidence 2 1 13445556666666543 456 55552 2333344567999999 889888864
|
|
| >PLN02535 glycolate oxidase | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.17 Score=48.81 Aligned_cols=97 Identities=13% Similarity=0.217 Sum_probs=62.7
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++++. +..+.+- --...+..+...+ .+|.|.+- +.|-....+-+.+++-|.++++... .+++|.+||
T Consensus 213 ~~i~~lr~~~~~PvivK--gV~~~~dA~~a~~~GvD~I~vs--n~GGr~~d~~~~t~~~L~ev~~av~---~~ipVi~dG 285 (364)
T PLN02535 213 KDIEWLRSITNLPILIK--GVLTREDAIKAVEVGVAGIIVS--NHGARQLDYSPATISVLEEVVQAVG---GRVPVLLDG 285 (364)
T ss_pred HHHHHHHhccCCCEEEe--cCCCHHHHHHHHhcCCCEEEEe--CCCcCCCCCChHHHHHHHHHHHHHh---cCCCEEeeC
Confidence 456777764 3444432 1134455555555 48998763 2232222344666777777766543 247899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. ..++.+.+..|||.+.+|+.++.
T Consensus 286 GIr~g~Dv~KALalGA~aV~vGr~~l~ 312 (364)
T PLN02535 286 GVRRGTDVFKALALGAQAVLVGRPVIY 312 (364)
T ss_pred CCCCHHHHHHHHHcCCCEEEECHHHHh
Confidence 999 66888999999999999998653
|
|
| >PRK15452 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.094 Score=51.80 Aligned_cols=117 Identities=18% Similarity=0.114 Sum_probs=76.3
Q ss_pred EecChhhHHHHHHHcCCCEEEEccccc---------ccccHHHHHHHHHHcCCcEEEEECCCCCH---HHHHHhhc----
Q 023494 123 MIVEPEQRVPDFIKAGADIVSVHCEQS---------STIHLHRTLNQIKDLGAKAGVVLNPATSL---SAIECVLD---- 186 (281)
Q Consensus 123 mv~dp~~~i~~~~~aGAd~Itvh~Ea~---------~~~~i~~~l~~ik~~G~k~Glai~p~t~i---e~~~~~l~---- 186 (281)
-+.+++ -++.++++|||.|.+..+.. +.+++.+.++.++++|+++.+++|.-..- +.+.++++
T Consensus 9 pag~~e-~l~aAi~~GADaVY~G~~~~~~R~~~~~f~~edl~eav~~ah~~g~kvyvt~n~i~~e~el~~~~~~l~~l~~ 87 (443)
T PRK15452 9 PAGTLK-NMRYAFAYGADAVYAGQPRYSLRVRNNEFNHENLALGINEAHALGKKFYVVVNIAPHNAKLKTFIRDLEPVIA 87 (443)
T ss_pred ECCCHH-HHHHHHHCCCCEEEECCCccchhhhccCCCHHHHHHHHHHHHHcCCEEEEEecCcCCHHHHHHHHHHHHHHHh
Confidence 445544 45667899999999976421 23568899999999999999998744333 33333333
Q ss_pred -cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh---hcHHHHHHcCCcEEEEccccc
Q 023494 187 -VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP---KNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 187 -~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~---e~i~~~~~aGAD~~VvGSaIf 258 (281)
.+|-|++- +|| . +..+++.. ++.++.+|-..|. ..+..+.+.|++-+|+-+-+.
T Consensus 88 ~gvDgvIV~--d~G---------~---l~~~ke~~----p~l~ih~stqlni~N~~a~~f~~~lG~~rvvLSrELs 145 (443)
T PRK15452 88 MKPDALIMS--DPG---------L---IMMVREHF----PEMPIHLSVQANAVNWATVKFWQQMGLTRVILSRELS 145 (443)
T ss_pred CCCCEEEEc--CHH---------H---HHHHHHhC----CCCeEEEEecccCCCHHHHHHHHHCCCcEEEECCcCC
Confidence 25666652 222 2 33334332 3467888887764 455667889999999887663
|
|
| >cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.3 Score=44.47 Aligned_cols=123 Identities=13% Similarity=0.197 Sum_probs=75.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---C-CCCeeEEEE----ecCh----------
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---T-DLPLDVHLM----IVEP---------- 127 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t-~~~idaHLm----v~dp---------- 127 (281)
|++ ..+++.++.+.+.|.|.+++.+-....-+....+...++++|+. . +..+.+|.- ..+|
T Consensus 7 ~~~-~~l~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~ 85 (279)
T cd00019 7 AAG-FGLENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIE 85 (279)
T ss_pred ccc-ccHHHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHH
Confidence 345 78999999999999999999854332222222355677777653 2 456666631 1233
Q ss_pred --hhHHHHHHHcCCCEEEEcccccc----c-------ccHHHHHHHHHHcCCcEEEEECCCC------CHHHHHHhhccC
Q 023494 128 --EQRVPDFIKAGADIVSVHCEQSS----T-------IHLHRTLNQIKDLGAKAGVVLNPAT------SLSAIECVLDVV 188 (281)
Q Consensus 128 --~~~i~~~~~aGAd~Itvh~Ea~~----~-------~~i~~~l~~ik~~G~k~Glai~p~t------~ie~~~~~l~~v 188 (281)
.+.++.+.+.|++.+.+|.-... . +.+.++.+.++++|+++++--.+.. ..+.+.++++.+
T Consensus 86 ~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~l~lEn~~~~~~~~~~t~~~~~~li~~v 165 (279)
T cd00019 86 RLKDEIERCEELGIRLLVFHPGSYLGQSKEEGLKRVIEALNELIDKAETKGVVIALETMAGQGNEIGSSFEELKEIIDLI 165 (279)
T ss_pred HHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHhc
Confidence 12456677889999999865321 0 1244455555677888888643332 445666777766
Q ss_pred C
Q 023494 189 D 189 (281)
Q Consensus 189 D 189 (281)
|
T Consensus 166 ~ 166 (279)
T cd00019 166 K 166 (279)
T ss_pred C
Confidence 5
|
Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar. |
| >cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.22 Score=45.77 Aligned_cols=95 Identities=17% Similarity=0.150 Sum_probs=57.5
Q ss_pred HHHHHHHHcCC---cEEEEECCCCCHHHHHHhhc-c-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhh---hcC-CC
Q 023494 156 RTLNQIKDLGA---KAGVVLNPATSLSAIECVLD-V-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL---EKG-VN 226 (281)
Q Consensus 156 ~~l~~ik~~G~---k~Glai~p~t~ie~~~~~l~-~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~---~~~-~~ 226 (281)
+.++.+++.-- ..-+.+...+ ++...+.+. . +|.|.+ + ++.++.++....+.+.+. ..+ .+
T Consensus 170 ~a~~~~~~~~~~~~~~~idve~~~-~~~~~~~~~~~~~d~irl---D------s~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (281)
T cd00516 170 AAVKALRRWLPELFIALIDVEVDT-LEEALEAAKAGGADGIRL---D------SGSPEELDPAVLILKARAHLDGKGLPR 239 (281)
T ss_pred HHHHHHHHhCCCCceEEEEEEeCC-HHHHHHHHhcCCCCEEEe---C------CCChHHHHHHHHHHHHHHhhhhcCCCc
Confidence 45666665432 2224444444 655555544 3 677654 1 122333333333322221 111 24
Q ss_pred CeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 227 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 227 ~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
..|++-||||++++..+.+.|+|++.+|+.+++.
T Consensus 240 ~~i~~Sggi~~~~i~~~~~~gvd~~gvG~~~~~~ 273 (281)
T cd00516 240 VKIEASGGLDEENIRAYAETGVDVFGVGTLLHSA 273 (281)
T ss_pred eEEEEeCCCCHHHHHHHHHcCCCEEEeCcccccC
Confidence 6799999999999999999999999999999875
|
QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway. |
| >PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.91 Score=42.34 Aligned_cols=182 Identities=16% Similarity=0.215 Sum_probs=111.8
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
.|+..+.-.++.+++.+...| +-+-.++. . -.|.+. ++.+.+....|+-+||==....+.+..++++|.+.|
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-lq~~~~~~-~--~~g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftSV 101 (284)
T PRK12857 26 NNMEIVQAIVAAAEAEKSPVI-IQASQGAI-K--YAGIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTSV 101 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEechhHh-h--hCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCeE
Confidence 344455566777888777765 44444421 1 023332 333334456899998854433457888999998877
Q ss_pred EEccccccc----ccHHHHHHHHHHcCCcE----EEE--------ECC----CCCHHHHHHhhc--cCCEEEE--EeecC
Q 023494 143 SVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LNP----ATSLSAIECVLD--VVDLVLI--MSVNP 198 (281)
Q Consensus 143 tvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~p----~t~ie~~~~~l~--~vD~Ilv--msV~p 198 (281)
-+=.-..+. ..-.++++.++..|+-+ |-. ... -|..+..+++.+ .+|.+.+ .++|-
T Consensus 102 M~DgS~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~~TgvD~LAvaiGt~HG 181 (284)
T PRK12857 102 MIDGSKLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVEETGVDALAIAIGTAHG 181 (284)
T ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHHHHCCCEEeeccCcccc
Confidence 765443221 22456777888888655 221 011 356677777775 4887654 44553
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.|.+ .-.+++|+++++.+ ++++..=|| +..+.++++++.|+.-+=+++.+..
T Consensus 182 ~y~~~p--~Ld~~~L~~i~~~~-----~vPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~ 237 (284)
T PRK12857 182 PYKGEP--KLDFDRLAKIKELV-----NIPIVLHGSSGVPDEAIRKAISLGVRKVNIDTNIRE 237 (284)
T ss_pred ccCCCC--cCCHHHHHHHHHHh-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeCcHHHH
Confidence 233322 12356677777664 367777665 5588999999999999999998864
|
|
| >TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype | Back alignment and domain information |
|---|
Probab=95.26 E-value=0.91 Score=43.49 Aligned_cols=191 Identities=12% Similarity=0.114 Sum_probs=114.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|..=+.|+..+.-.++.+++.+...| +-+-.++ |.+ ..+-..+++.+.+.. ..|+-+||==......+..++++|
T Consensus 19 ~AfN~~n~e~~~aii~AAEe~~sPvI-lq~s~~~~~~~g-~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~G 96 (347)
T TIGR01521 19 PAFNVNNMEQMRAIMEAADKTDSPVI-LQASRGARSYAG-APFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLG 96 (347)
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEE-EECCcchhhhCC-HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 33333455555566777888877765 4444432 222 111223444444444 489999986544445788899999
Q ss_pred CCEEEEccccc-------c----cccHHHHHHHHHHcCCcE----EEE--E--------------------CCCCCHHHH
Q 023494 139 ADIVSVHCEQS-------S----TIHLHRTLNQIKDLGAKA----GVV--L--------------------NPATSLSAI 181 (281)
Q Consensus 139 Ad~Itvh~Ea~-------~----~~~i~~~l~~ik~~G~k~----Gla--i--------------------~p~t~ie~~ 181 (281)
.+.|-+=.-.. + ...-+++++.++..|+-+ |-. . ..-|..+..
T Consensus 97 FtSVMiDgS~l~~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~PeeA 176 (347)
T TIGR01521 97 FTSVMMDGSLREDAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEEA 176 (347)
T ss_pred CCEEeecCcCCcccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHHH
Confidence 87776654321 1 112346777788777543 221 1 013566778
Q ss_pred HHhhc--cCCEEEE--EeecCCCCCCccch----hHHHHHHHHHHHhhhcCCCCeEEEecCCC-----------------
Q 023494 182 ECVLD--VVDLVLI--MSVNPGFGGQSFIE----SQVKKISDLRRMCLEKGVNPWIEVDGGVG----------------- 236 (281)
Q Consensus 182 ~~~l~--~vD~Ilv--msV~pG~~GQ~f~~----~~l~kI~~lr~l~~~~~~~~~I~VDGGI~----------------- 236 (281)
+++.+ .+|.+.+ .++|--+.+ ...| --+++|+++++.++ ++++..=||=.
T Consensus 177 ~~Fv~~TgvD~LAvaiGt~HG~Yk~-~~~p~~~~Ld~~rL~eI~~~v~----~vPLVLHGgSG~p~~~~~~~~~~~~~~~ 251 (347)
T TIGR01521 177 ADFVKKTKVDALAVAIGTSHGAYKF-TRKPTGEVLAIQRIEEIHARLP----DTHLVMHGSSSVPQEWLDIINEYGGEIK 251 (347)
T ss_pred HHHHHHHCcCEEehhcccccCCcCC-CCCCChhhcCHHHHHHHHccCC----CCCEEEeCCCCCchHhhHHHHhhccccc
Confidence 88876 4887653 444422222 1122 23677777776652 36787777665
Q ss_pred ------hhcHHHHHHcCCcEEEEcccccC
Q 023494 237 ------PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 237 ------~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.++++++.|+.-|=+++.+..
T Consensus 252 ~~~g~p~e~i~~ai~~GI~KVNi~Tdl~~ 280 (347)
T TIGR01521 252 ETYGVPVEEIVEGIKYGVRKVNIDTDLRL 280 (347)
T ss_pred ccCCCCHHHHHHHHHCCCeeEEeChHHHH
Confidence 58999999999999999998864
|
Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle. |
| >PRK07709 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=1.7 Score=40.49 Aligned_cols=188 Identities=16% Similarity=0.169 Sum_probs=114.6
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCC--CCCeeEEEEecChhhHHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVT--DLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t--~~~idaHLmv~dp~~~i~~~~ 135 (281)
|..=+.|+..+.-.++.+++.+...| +-+-.|++ . ...|.+ +++.+.+.. +.|+-+||==....+.+..++
T Consensus 21 ~AfN~~n~e~~~avi~AAe~~~sPvI-iq~~~~~~-~-~~~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai 97 (285)
T PRK07709 21 GQFNMNNLEWTQAILAAAEEEKSPVI-LGVSEGAA-R-HMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAI 97 (285)
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EEcCcchh-h-hcCCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHH
Confidence 33344455555566778888777765 44444321 0 101322 344444333 378999885544445788899
Q ss_pred HcCCCEEEEcccccc----cccHHHHHHHHHHcCCcE----EEE--------E--CCCCCHHHHHHhhc--cCCEEEE--
Q 023494 136 KAGADIVSVHCEQSS----TIHLHRTLNQIKDLGAKA----GVV--------L--NPATSLSAIECVLD--VVDLVLI-- 193 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~----Gla--------i--~p~t~ie~~~~~l~--~vD~Ilv-- 193 (281)
++|.+.|-+=.-..+ ...-+++++.++..|+-+ |-. - ..-|..+...++.+ .+|.+.+
T Consensus 98 ~~GftSVM~DgS~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~~TgvD~LAvai 177 (285)
T PRK07709 98 DAGFTSVMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPAL 177 (285)
T ss_pred HcCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHHHhCCCEEEEee
Confidence 999887766543322 123457778888888654 221 0 01377788888876 4897654
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.++|--+.+.+ .--+++|+++++.+ ++++..=||-+ .+.++++++.|+.-+=+++.+..
T Consensus 178 Gt~HG~Y~~~p--~L~~~~L~~I~~~~-----~iPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~~ 238 (285)
T PRK07709 178 GSVHGPYKGEP--NLGFAEMEQVRDFT-----GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQI 238 (285)
T ss_pred cccccCcCCCC--ccCHHHHHHHHHHH-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEeChHHHH
Confidence 34442222311 12256777776654 37888877644 78999999999999999998753
|
|
| >PRK10415 tRNA-dihydrouridine synthase B; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.56 Score=44.29 Aligned_cols=131 Identities=15% Similarity=0.199 Sum_probs=82.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---------------ccCCHHHHHHcCcCCCCCeeEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---------------ITIGPLVVDALRPVTDLPLDVH 121 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---------------~~~G~~~I~~ir~~t~~~idaH 121 (281)
+..+++.|...|+..+.+..+.+.+.|+|.| |+-=| .|+ ..+-.++++.+|+..+.|+.+-
T Consensus 64 ~~~~~vQl~g~~~~~~~~aa~~~~~~g~d~I--dlN~g--CP~~~v~~~g~Gs~ll~~p~~~~eiv~av~~a~d~pv~vK 139 (321)
T PRK10415 64 PGIRTVQIAGSDPKEMADAARINVESGAQII--DINMG--CPAKKVNRKLAGSALLQYPDLVKSILTEVVNAVDVPVTLK 139 (321)
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEE--EEeCC--CCHHHHcCCCcccHHhcCHHHHHHHHHHHHHhcCCceEEE
Confidence 4457799999999999999988888889875 43333 243 1222344556666667787775
Q ss_pred EEe--c----ChhhHHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc--c
Q 023494 122 LMI--V----EPEQRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--V 187 (281)
Q Consensus 122 Lmv--~----dp~~~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~--~ 187 (281)
+-. . +..++++.+.++|+|.+++|.... ...+ .+.++.+++.- ++=|..|-+ +..+.++++++ .
T Consensus 140 iR~G~~~~~~~~~~~a~~le~~G~d~i~vh~rt~~~~~~G~a~-~~~i~~ik~~~-~iPVI~nGgI~s~~da~~~l~~~g 217 (321)
T PRK10415 140 IRTGWAPEHRNCVEIAQLAEDCGIQALTIHGRTRACLFNGEAE-YDSIRAVKQKV-SIPVIANGDITDPLKARAVLDYTG 217 (321)
T ss_pred EEccccCCcchHHHHHHHHHHhCCCEEEEecCccccccCCCcC-hHHHHHHHHhc-CCcEEEeCCCCCHHHHHHHHhccC
Confidence 432 1 223456677899999999997631 0122 35666666642 222333333 56777788776 4
Q ss_pred CCEEEE
Q 023494 188 VDLVLI 193 (281)
Q Consensus 188 vD~Ilv 193 (281)
+|.|++
T Consensus 218 adgVmi 223 (321)
T PRK10415 218 ADALMI 223 (321)
T ss_pred CCEEEE
Confidence 898876
|
|
| >PRK05835 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=95.25 E-value=0.92 Score=42.77 Aligned_cols=184 Identities=14% Similarity=0.174 Sum_probs=110.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
|+..+.-.++.+++.+...| +-+-.++ |.+ ..+-..+++.+.+.. ..|+.+||==..-.+.+..++++|.+.|-+
T Consensus 26 n~e~~~avi~AAe~~~sPvI-lq~s~~~~~~~g-~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~GftSVM~ 103 (307)
T PRK05835 26 NFEMLNAIFEAGNEENSPLF-IQASEGAIKYMG-IDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFTSVMI 103 (307)
T ss_pred CHHHHHHHHHHHHHHCCCEE-EEcCccHHhhCC-hHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCCEEEE
Confidence 33344455677777777764 4443432 111 111112444444444 389999985543345788899999887776
Q ss_pred cccccc----cccHHHHHHHHHHcCCcE----EEEE----------CC--CCCHHHHHHhhc--cCCEEEE--EeecCCC
Q 023494 145 HCEQSS----TIHLHRTLNQIKDLGAKA----GVVL----------NP--ATSLSAIECVLD--VVDLVLI--MSVNPGF 200 (281)
Q Consensus 145 h~Ea~~----~~~i~~~l~~ik~~G~k~----Glai----------~p--~t~ie~~~~~l~--~vD~Ilv--msV~pG~ 200 (281)
=.-..+ ...-.++.+.++.+|+-+ |-.= +. -|+.+...++.. .+|.+.+ .++| |.
T Consensus 104 DgS~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~~TgvD~LAvaiGt~H-G~ 182 (307)
T PRK05835 104 DASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGTSH-GA 182 (307)
T ss_pred eCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHHhhCCCEEEEccCccc-cc
Confidence 544322 122457778888888654 2210 01 356677778776 4898643 3444 22
Q ss_pred CCCccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC--hh---------------------cHHHHHHcCCcEEEEccc
Q 023494 201 GGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PK---------------------NAYKVIEAGANALVAGSA 256 (281)
Q Consensus 201 ~GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e---------------------~i~~~~~aGAD~~VvGSa 256 (281)
..++-.|. .+++|+++++.+ ++++..=||=+ .+ .++++++.|+.-+=+++.
T Consensus 183 Yk~~~~p~L~f~~L~~I~~~~-----~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai~~GI~KiNi~T~ 257 (307)
T PRK05835 183 FKFKGEPKLDFERLQEVKRLT-----NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESVKGGINKVNTDTD 257 (307)
T ss_pred cCCCCCCccCHHHHHHHHHHh-----CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHHHcCceEEEeChH
Confidence 21101222 367777777765 37888878766 33 899999999999999998
Q ss_pred ccC
Q 023494 257 VFG 259 (281)
Q Consensus 257 If~ 259 (281)
+..
T Consensus 258 l~~ 260 (307)
T PRK05835 258 LRI 260 (307)
T ss_pred HHH
Confidence 853
|
|
| >PRK10550 tRNA-dihydrouridine synthase C; Provisional | Back alignment and domain information |
|---|
Probab=95.18 E-value=0.52 Score=44.40 Aligned_cols=134 Identities=19% Similarity=0.155 Sum_probs=86.2
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc---cc----------CCHHHHHHcCcCC--CCCeeEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---IT----------IGPLVVDALRPVT--DLPLDVH 121 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---~~----------~G~~~I~~ir~~t--~~~idaH 121 (281)
+.-+.+.|+..|+..+.++.+.+.+.|.|.| ||-=|.-.|. -. +-.++++++|+.+ ++|+-+-
T Consensus 62 e~p~~vQl~g~~p~~~~~aA~~~~~~g~d~I--diN~GCP~~~v~~~g~Gs~Ll~~~~~~~eiv~avr~~~~~~~pVsvK 139 (312)
T PRK10550 62 GTLVRIQLLGQYPQWLAENAARAVELGSWGV--DLNCGCPSKTVNGSGGGATLLKDPELIYQGAKAMREAVPAHLPVTVK 139 (312)
T ss_pred CCcEEEEeccCCHHHHHHHHHHHHHcCCCEE--EEeCCCCchHHhcCCCchHhhcCHHHHHHHHHHHHHhcCCCcceEEE
Confidence 4468999999999999999999999999865 5554542221 12 2234455667654 4788876
Q ss_pred EEe--cChh---hHHHHHHHcCCCEEEEcccccc----c--ccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc--c
Q 023494 122 LMI--VEPE---QRVPDFIKAGADIVSVHCEQSS----T--IHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--V 187 (281)
Q Consensus 122 Lmv--~dp~---~~i~~~~~aGAd~Itvh~Ea~~----~--~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~--~ 187 (281)
+=+ .+.. ++.+.+.++|+|.+++|..... . .+. +.++.+++.- ++=|..|-+ +..+.+++++. .
T Consensus 140 iR~g~~~~~~~~~~a~~l~~~Gvd~i~Vh~Rt~~~~y~g~~~~~-~~i~~ik~~~-~iPVi~nGdI~t~~da~~~l~~~g 217 (312)
T PRK10550 140 VRLGWDSGERKFEIADAVQQAGATELVVHGRTKEDGYRAEHINW-QAIGEIRQRL-TIPVIANGEIWDWQSAQQCMAITG 217 (312)
T ss_pred EECCCCCchHHHHHHHHHHhcCCCEEEECCCCCccCCCCCcccH-HHHHHHHhhc-CCcEEEeCCcCCHHHHHHHHhccC
Confidence 544 2222 3456677899999999976420 0 122 4677777652 333444444 56677888775 4
Q ss_pred CCEEEEE
Q 023494 188 VDLVLIM 194 (281)
Q Consensus 188 vD~Ilvm 194 (281)
+|.|++.
T Consensus 218 ~DgVmiG 224 (312)
T PRK10550 218 CDAVMIG 224 (312)
T ss_pred CCEEEEc
Confidence 8999873
|
|
| >TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.95 Score=45.75 Aligned_cols=164 Identities=15% Similarity=0.220 Sum_probs=98.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC--CCCCeeEEEEecCh------hhHHHHHHHcCCCEEEE
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV--TDLPLDVHLMIVEP------EQRVPDFIKAGADIVSV 144 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~--t~~~idaHLmv~dp------~~~i~~~~~aGAd~Itv 144 (281)
+..+.|.+.|+|+|++ | | |..+ --.+.++.|++. .+..+.++.-...+ .+-++.+.++|++.|++
T Consensus 27 ~Ia~~L~~~GVd~IE~----G-~-p~~s~~d~~~v~~i~~~~~~~~~i~~~~r~~r~~~~~~~d~~~ea~~~~~~~~v~i 100 (526)
T TIGR00977 27 RIAERLDDLGIHYIEG----G-W-PGANPKDVQFFWQLKEMNFKNAKIVAFCSTRRPHKKVEEDKMLQALIKAETPVVTI 100 (526)
T ss_pred HHHHHHHHcCCCEEEE----e-C-CCCChHHHHHHHHHHHhCCCCcEEEEEeeecCCCCCCchHHHHHHHhcCCCCEEEE
Confidence 4456677889988887 4 3 3221 112344444331 23455555544433 24578889999999888
Q ss_pred ccccc--------------ccccHHHHHHHHHHcCCcEEEEEC-----CCCCHHHHHHhhcc-----CCEEEEEeecCCC
Q 023494 145 HCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN-----PATSLSAIECVLDV-----VDLVLIMSVNPGF 200 (281)
Q Consensus 145 h~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~-----p~t~ie~~~~~l~~-----vD~IlvmsV~pG~ 200 (281)
..-+. ..+.+.+.++.+|++|.++..... -.++.+.+.+++.. +|.|.+- -.
T Consensus 101 ~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~D~~r~~~~~l~~~~~~a~~aGad~i~i~----DT 176 (526)
T TIGR00977 101 FGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFFDGYKANPEYALATLATAQQAGADWLVLC----DT 176 (526)
T ss_pred EeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeeecccCCHHHHHHHHHHHHhCCCCeEEEe----cC
Confidence 54321 011245668889999998764221 13666666666543 6777653 33
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
-|.....+..+.++.+++.++. ..|++ |-|.-..|.-..+++||+.+
T Consensus 177 vG~~~P~~v~~li~~l~~~~~~----~~i~vH~HND~GlAvANslaAv~AGA~~V 227 (526)
T TIGR00977 177 NGGTLPHEISEITTKVKRSLKQ----PQLGIHAHNDSGTAVANSLLAVEAGATMV 227 (526)
T ss_pred CCCcCHHHHHHHHHHHHHhCCC----CEEEEEECCCCChHHHHHHHHHHhCCCEE
Confidence 3444444555667777765431 34666 88888888888999999965
|
This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases. |
| >cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.4 Score=46.14 Aligned_cols=127 Identities=19% Similarity=0.161 Sum_probs=75.7
Q ss_pred HHHcCCCEEEEccccc--------cc----------------ccHHHHHHHHHHc-CC--cEEEEECCCC--------CH
Q 023494 134 FIKAGADIVSVHCEQS--------ST----------------IHLHRTLNQIKDL-GA--KAGVVLNPAT--------SL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~~----------------~~i~~~l~~ik~~-G~--k~Glai~p~t--------~i 178 (281)
+.++|.|+|-+|.-.. +. .-+.++++.+|+. |. .+++=+++.. ..
T Consensus 159 a~~aGfDgVEih~ahGyLl~QFlSp~~N~RtD~yGGslenR~Rf~~eii~aIr~~vg~~~~v~vRls~~~~~~~~g~~~~ 238 (370)
T cd02929 159 ARDAGFDIVYVYAAHGYLPLQFLLPRYNKRTDEYGGSLENRARFWRETLEDTKDAVGDDCAVATRFSVDELIGPGGIESE 238 (370)
T ss_pred HHHcCCCEEEEcccccchHHHhhCccccCCccccCCChHhhhHHHHHHHHHHHHHcCCCceEEEEecHHHhcCCCCCCCH
Confidence 4678999999996541 00 0155888899885 54 4566566432 23
Q ss_pred HHHH---Hhhc-cCCEEEEEeecCCCCCC--ccchhH--HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-C
Q 023494 179 SAIE---CVLD-VVDLVLIMSVNPGFGGQ--SFIESQ--VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-A 248 (281)
Q Consensus 179 e~~~---~~l~-~vD~IlvmsV~pG~~GQ--~f~~~~--l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-A 248 (281)
++.. +.++ .+|++-+-.......+. .+.+.. ++..+++|+.. +.++.+-|||+ ++.+.++++.| +
T Consensus 239 ~e~~~~~~~l~~~~D~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~~~~~~~~l~~g~~ 313 (370)
T cd02929 239 GEGVEFVEMLDELPDLWDVNVGDWANDGEDSRFYPEGHQEPYIKFVKQVT-----SKPVVGVGRFTSPDKMVEVVKSGIL 313 (370)
T ss_pred HHHHHHHHHHHhhCCEEEecCCCccccccccccCCccccHHHHHHHHHHC-----CCCEEEeCCCCCHHHHHHHHHcCCC
Confidence 3222 2233 37877552211100011 111211 33344555543 46788889996 88999999987 9
Q ss_pred cEEEEcccccCCCCHHH
Q 023494 249 NALVAGSAVFGAKDYAE 265 (281)
Q Consensus 249 D~~VvGSaIf~a~dp~~ 265 (281)
|.+.+|+++...+|.-+
T Consensus 314 D~V~~gR~~ladP~l~~ 330 (370)
T cd02929 314 DLIGAARPSIADPFLPK 330 (370)
T ss_pred CeeeechHhhhCchHHH
Confidence 99999999998776543
|
TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine. |
| >cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=95.09 E-value=1.9 Score=39.60 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=90.7
Q ss_pred eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc--------HHHHHHHHH
Q 023494 91 VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH--------LHRTLNQIK 162 (281)
Q Consensus 91 ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~--------i~~~l~~ik 162 (281)
.-||.+.|+..|+.+...+| .+.+.++|.|+|-+..-+.+..+ -.+.++.+.
T Consensus 6 LRDG~q~~~~~f~~~~~~~i--------------------a~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~ 65 (266)
T cd07944 6 LRDGGYVNNWDFGDEFVKAI--------------------YRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLL 65 (266)
T ss_pred cccCccccCccCCHHHHHHH--------------------HHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHH
Confidence 45888899998888877654 44566788888877643211111 134455554
Q ss_pred Hc---CCcEEEEECCCC-CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe--EEEecCC
Q 023494 163 DL---GAKAGVVLNPAT-SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW--IEVDGGV 235 (281)
Q Consensus 163 ~~---G~k~Glai~p~t-~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~--I~VDGGI 235 (281)
+. +.++.....+.. ..+.+.+..+. +|.|-+- + ..+.++++.+..+..+++|..+. ++-..+.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~l~~a~~~gv~~iri~-----~-----~~~~~~~~~~~i~~ak~~G~~v~~~~~~a~~~ 135 (266)
T cd07944 66 GDSKGNTKIAVMVDYGNDDIDLLEPASGSVVDMIRVA-----F-----HKHEFDEALPLIKAIKEKGYEVFFNLMAISGY 135 (266)
T ss_pred hhhccCCEEEEEECCCCCCHHHHHHHhcCCcCEEEEe-----c-----ccccHHHHHHHHHHHHHCCCeEEEEEEeecCC
Confidence 43 567777777663 55666665553 7776542 1 12245556666665555554333 2234667
Q ss_pred Chh----cHHHHHHcCCcEEEEc--ccccCCCCHHHHHHHHHHhcC
Q 023494 236 GPK----NAYKVIEAGANALVAG--SAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 236 ~~e----~i~~~~~aGAD~~VvG--SaIf~a~dp~~~~~~l~~~~~ 275 (281)
+++ .++.+.++|+|.+.+. ..+...++..+.++.+++.+.
T Consensus 136 ~~~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~ 181 (266)
T cd07944 136 SDEELLELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLD 181 (266)
T ss_pred CHHHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcC
Confidence 765 4456678899988776 224444445556666665543
|
This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t |
| >PRK15447 putative protease; Provisional | Back alignment and domain information |
|---|
Probab=95.09 E-value=0.43 Score=44.64 Aligned_cols=113 Identities=9% Similarity=-0.025 Sum_probs=75.1
Q ss_pred ChhhHHHHHHHcCCCEEEEcccc------cccccHHHHHHHHHHcCCcEEEEECCCC----CHHHHHHhhcc-CCEEEEE
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQ------SSTIHLHRTLNQIKDLGAKAGVVLNPAT----SLSAIECVLDV-VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea------~~~~~i~~~l~~ik~~G~k~Glai~p~t----~ie~~~~~l~~-vD~Ilvm 194 (281)
+...+...+.+.|||.|.+..+. .+.+++.+.++.++++|+++.++++.=. ..+.+.++++. +|.|++
T Consensus 16 ~~~~~~~~~~~~gaDaVY~g~~~~~~R~~f~~~~l~e~v~~~~~~gkkvyva~p~i~~~~~e~~~l~~~l~~~~~~v~v- 94 (301)
T PRK15447 16 TVRDFYQRAADSPVDIVYLGETVCSKRRELKVGDWLELAERLAAAGKEVVLSTLALVEAPSELKELRRLVENGEFLVEA- 94 (301)
T ss_pred CHHHHHHHHHcCCCCEEEECCccCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccccCHHHHHHHHHHHhcCCCEEEE-
Confidence 34456777778899999998543 2356799999999999999999875431 23345555443 344433
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEccccc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGSaIf 258 (281)
-+ +.-+..+++. +.++.+|-.+| ...+..+.+.|++-+++..-+-
T Consensus 95 -~d------------~g~l~~~~e~------~~~l~~d~~lni~N~~a~~~l~~~G~~rv~ls~ELs 142 (301)
T PRK15447 95 -ND------------LGAVRLLAER------GLPFVAGPALNCYNAATLALLARLGATRWCMPVELS 142 (301)
T ss_pred -eC------------HHHHHHHHhc------CCCEEEecccccCCHHHHHHHHHcCCcEEEECCcCC
Confidence 11 2223333331 35788899987 4466678899999999886665
|
|
| >TIGR02708 L_lactate_ox L-lactate oxidase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.17 Score=48.78 Aligned_cols=110 Identities=14% Similarity=0.173 Sum_probs=66.9
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+.++++++. ++.+. +..-...+..+...+ .+|.|.| +.|.|. |. -.+..++-|.++++... .+++|.+|
T Consensus 218 ~~i~~l~~~~~~Pvi--vKGv~~~eda~~a~~~Gvd~I~V-S~HGGr--q~~~~~a~~~~L~ei~~av~---~~i~vi~d 289 (367)
T TIGR02708 218 RDIEEIAGYSGLPVY--VKGPQCPEDADRALKAGASGIWV-TNHGGR--QLDGGPAAFDSLQEVAEAVD---KRVPIVFD 289 (367)
T ss_pred HHHHHHHHhcCCCEE--EeCCCCHHHHHHHHHcCcCEEEE-CCcCcc--CCCCCCcHHHHHHHHHHHhC---CCCcEEee
Confidence 346666664 44433 332233555555555 4898865 566542 22 22445666666665542 24789999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHHHh
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIKTS 273 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~~~ 273 (281)
|||. ..++.+.+..|||.+-+|+.+.. .+-....++.|++.
T Consensus 290 GGIr~g~Dv~KaLalGAd~V~igR~~l~~la~~G~~gv~~~l~~l~~E 337 (367)
T TIGR02708 290 SGVRRGQHVFKALASGADLVALGRPVIYGLALGGSQGARQVFEYLNKE 337 (367)
T ss_pred CCcCCHHHHHHHHHcCCCEEEEcHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 9999 66777888899999999988432 12334455555543
|
Members of this protein oxidize L-lactate to pyruvate, reducing molecular oxygen to hydrogen peroxide. The enzyme is known in Aerococcus viridans, Streptococcus iniae, and some strains of Streptococcus pyogenes where it appears to contribute to virulence. |
| >cd08210 RLP_RrRLP Ribulose bisphosphate carboxylase like proteins (RLPs) similar to R | Back alignment and domain information |
|---|
Probab=95.07 E-value=1.4 Score=42.56 Aligned_cols=201 Identities=22% Similarity=0.255 Sum_probs=112.9
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEE--eeeCccccc---ccCCHHHHHHcCcCCCC--CeeEEEEecChhh---
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVD--VMDGRFVPN---ITIGPLVVDALRPVTDL--PLDVHLMIVEPEQ--- 129 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn---~~~G~~~I~~ir~~t~~--~idaHLmv~dp~~--- 129 (281)
|=| . -+|...+.+.+..+..+|+|.|--| .-|..|.|- +....+.+++..+.|+. ++-+.+- .++.+
T Consensus 133 iKP-~-GL~~~~~a~~~~~~~~gGvD~IKdDe~l~~~~~~p~~eRv~~v~~av~~a~~eTG~~~~y~~Nit-a~~~em~~ 209 (364)
T cd08210 133 LKP-Q-GLSAAELAELAYAFALGGIDIIKDDHGLADQPFAPFEERVKACQEAVAEANAETGGRTLYAPNVT-GPPTQLLE 209 (364)
T ss_pred ecc-c-cCCHHHHHHHHHHHHhcCCCeeecCccccCccCCCHHHHHHHHHHHHHHHHhhcCCcceEEEecC-CCHHHHHH
Confidence 557 3 7899999999999999999998665 344555552 12334444444443443 3333221 33333
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----------CCCCCHHH---HHHhhc--cCCEEEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----------NPATSLSA---IECVLD--VVDLVLIM 194 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----------~p~t~ie~---~~~~l~--~vD~Ilvm 194 (281)
..+.+.++|++.+-+-.-.. -. ..++.+++....+-+.. +|.. ++. +.++.. .+|.+++
T Consensus 210 ra~~a~~~Ga~~vMv~~~~~---G~-~~~~~l~~~~~~l~i~aHra~~ga~~~~~~~-is~~~~~~kl~RlaGad~~~~- 283 (364)
T cd08210 210 RARFAKEAGAGGVLIAPGLT---GL-DTFRELAEDFDFLPILAHPAFAGAFVSSGDG-ISHALLFGTLFRLAGADAVIF- 283 (364)
T ss_pred HHHHHHHcCCCEEEeecccc---hH-HHHHHHHhcCCCcEEEEccccccccccCCCc-ccHHHHHHHHHHHhCCCEEEe-
Confidence 35556789999988876531 11 23444444322122222 2333 332 555544 3787754
Q ss_pred eecCCCCC-CccchhHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEE-cccccCCCC-HHHHHHH
Q 023494 195 SVNPGFGG-QSFIESQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVA-GSAVFGAKD-YAEAIKG 269 (281)
Q Consensus 195 sV~pG~~G-Q~f~~~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~Vv-GSaIf~a~d-p~~~~~~ 269 (281)
|+..| -.+.++.+.++.+. ++-...-...+++ ..||+++..++.+++. |.|+++. |..|+..+| +++-++.
T Consensus 284 ---~~~~g~~~~~~e~~~~ia~~~~~~~~~iK~~~Pv-~sgG~~~~~v~~l~~~~G~Dvil~aGGgi~gHp~g~~ag~~a 359 (364)
T cd08210 284 ---PNYGGRFGFSREECQAIADACRRPMGGLKPILPA-PGGGMSVERAPEMVELYGPDVMLLIGGSLLRAGDDLTENTRA 359 (364)
T ss_pred ---CCCcCCccCCHHHHHHHHHHhcCCccccCCCcCc-CCCCcCHHHHHHHHHHcCCcEEEEccccccCCCCChHHHHHH
Confidence 33333 33455555555432 1111000011222 4889999999977655 8886654 577999865 8888888
Q ss_pred HHHh
Q 023494 270 IKTS 273 (281)
Q Consensus 270 l~~~ 273 (281)
+++.
T Consensus 360 ~rqa 363 (364)
T cd08210 360 FVEA 363 (364)
T ss_pred HHhh
Confidence 8764
|
rubrum RLP. RLP from Rhodospirillum rubrum plays a role in an uncharacterized sulfur salvage pathway and has been shown to catalyze a novel isomerization reaction that converts 5-methylthio-d-ribulose 1-phosphate to a 3:1 mixture of 1-methylthioxylulose 5-phosphate and 1-methylthioribulose 5-phosphate. |
| >TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.22 Score=50.68 Aligned_cols=121 Identities=10% Similarity=0.099 Sum_probs=89.6
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHH-------------cCCcEEEEECCCCCHHHHHHhhccCCEEEEEeec---
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKD-------------LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN--- 197 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~-------------~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~--- 197 (281)
+.+.|+..|.|+.-. +.+++.++.+.++. ....+|+.+....-+..+.+++..+|++.+.+-+
T Consensus 379 a~~~G~~~Im~PmV~-t~eE~~~~~~~~~~~~~~l~~~~~~~~~~~~vg~mIEtpaav~~~d~ia~~vDf~sIGtnDLsq 457 (565)
T TIGR01417 379 ASAYGKLRIMFPMVA-TVEEIRAVKQELEEEKQELNDEGKAFDENIEVGVMIEIPSAALIADHLAKEVDFFSIGTNDLTQ 457 (565)
T ss_pred HHhcCCCeEEecCCC-CHHHHHHHHHHHHHHHHHHHHhccccccCcEEEEEEcCHHHHHhHHHHHhhCCEEEEChhHHHH
Confidence 456799999999765 35566666665553 2467888887666667888888899999885432
Q ss_pred -----------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcCCcEEEEcccc
Q 023494 198 -----------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 198 -----------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
.|.-+|.+.|.++.-|+++.+...++ +.++.+=| .-+++-++.++..|++.+.++..-
T Consensus 458 y~la~dR~n~~l~~~~~~~hPaV~~~i~~vi~~a~~~--g~~v~vCGe~a~~p~~~~~l~~~G~~~lsv~~~~ 528 (565)
T TIGR01417 458 YTLAVDRGNDLISNLYQPYNPAVLRLIKLVIDAAKAE--GIWVGMCGEMAGDERAIPLLLGLGLRELSMSASS 528 (565)
T ss_pred HHHhhcccchhhhcccCCCCHHHHHHHHHHHHHHHHc--CCeEEEeCCcCCCHHHHHHHHHCCCCEEEEChHh
Confidence 34457889999999999888877665 45676644 346889999999999999999553
|
This model recognizes a distinct clade of phophoenolpyruvate (PEP)-dependent enzymes. Most members are known or deduced to function as the phosphoenolpyruvate-protein phosphotransferase (or enzyme I) of PTS sugar transport systems. However, some species with both a member of this family and a homolog of the phosphocarrier protein HPr lack a IIC component able to serve as a permease. An HPr homolog designated NPr has been implicated in the regulation of nitrogen assimilation, which demonstrates that not all phosphotransferase system components are associated directly with PTS transport. |
| >TIGR02317 prpB methylisocitrate lyase | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.21 Score=46.52 Aligned_cols=181 Identities=19% Similarity=0.195 Sum_probs=103.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEE---------EeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--c
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHV---------DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--V 125 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHi---------DImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~ 125 (281)
...+.|..+ +-.. -+.++++|.+.+.+ ..-|+.+++ ++.-...++.|...+++|+.+|.=. -
T Consensus 13 ~~l~~p~~~-----Da~S-Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt-~~e~~~~~~~I~~~~~iPviaD~d~GyG 85 (285)
T TIGR02317 13 DILQIPGAI-----NAMA-ALLAERAGFEAIYLSGAAVAASLGLPDLGITT-LDEVAEDARRITRVTDLPLLVDADTGFG 85 (285)
T ss_pred CcEEeCCCC-----CHHH-HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCC-HHHHHHHHHHHHhccCCCEEEECCCCCC
Confidence 455666555 2222 23555667776544 234533332 3344556777777788999998877 3
Q ss_pred Chhh---HHHHHHHcCCCEEEEcccc-------------cccccHHHHHHHHHHcCCcEEEEECCCCC----------HH
Q 023494 126 EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLGAKAGVVLNPATS----------LS 179 (281)
Q Consensus 126 dp~~---~i~~~~~aGAd~Itvh~Ea-------------~~~~~i~~~l~~ik~~G~k~Glai~p~t~----------ie 179 (281)
+|.+ .++.+.++|+..|++-.-. .+.++..+-|+.+++.-...-+.|+--|+ ++
T Consensus 86 ~~~~v~~tv~~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~ 165 (285)
T TIGR02317 86 EAFNVARTVREMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIE 165 (285)
T ss_pred CHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHH
Confidence 4543 4888999999888774211 01223334444555432222233333332 34
Q ss_pred HHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE---EEecCCCh-hcHHHHHHcCCcEEEEc
Q 023494 180 AIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EVDGGVGP-KNAYKVIEAGANALVAG 254 (281)
Q Consensus 180 ~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I---~VDGGI~~-e~i~~~~~aGAD~~VvG 254 (281)
+.+.|.+ .+|.|.+ ||. ...+.++++.+.++ .++ .+.||-++ -++.++.+.|++.++.|
T Consensus 166 Ra~ay~~AGAD~vfi----~g~-------~~~e~i~~~~~~i~-----~Pl~~n~~~~~~~p~~s~~eL~~lGv~~v~~~ 229 (285)
T TIGR02317 166 RAKAYVEAGADMIFP----EAL-------TSLEEFRQFAKAVK-----VPLLANMTEFGKTPLFTADELREAGYKMVIYP 229 (285)
T ss_pred HHHHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEeccCCCCCCCCHHHHHHcCCcEEEEc
Confidence 5555555 4898876 342 23444555555443 233 24566654 37899999999999999
Q ss_pred ccccCC
Q 023494 255 SAVFGA 260 (281)
Q Consensus 255 SaIf~a 260 (281)
...+.+
T Consensus 230 ~~~~~a 235 (285)
T TIGR02317 230 VTAFRA 235 (285)
T ss_pred hHHHHH
Confidence 887753
|
Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus. |
| >cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.18 Score=48.97 Aligned_cols=96 Identities=15% Similarity=0.151 Sum_probs=64.1
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++++. +..+.+ ..-...+..+...+ .+|.|.+ +-+-| .....-+.+++-|.++++.+.. +++|.+||
T Consensus 243 ~~i~~lr~~~~~pviv--KgV~~~~dA~~a~~~G~d~I~v-snhGG-r~~d~~~~t~~~L~ei~~~~~~---~~~vi~dG 315 (383)
T cd03332 243 EDLAFLREWTDLPIVL--KGILHPDDARRAVEAGVDGVVV-SNHGG-RQVDGSIAALDALPEIVEAVGD---RLTVLFDS 315 (383)
T ss_pred HHHHHHHHhcCCCEEE--ecCCCHHHHHHHHHCCCCEEEE-cCCCC-cCCCCCcCHHHHHHHHHHHhcC---CCeEEEeC
Confidence 456667764 555444 22245666666655 4999876 33323 2222345567777777776542 47899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
||. -.++-+.+..|||.+-+|+.+.
T Consensus 316 GIr~G~Dv~KALaLGA~~v~iGr~~l 341 (383)
T cd03332 316 GVRTGADIMKALALGAKAVLIGRPYA 341 (383)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 5578888999999999998865
|
LMO is a FMN-containing enzyme that catalyzes the conversion of L-lactate and oxygen to acetate, carbon dioxide, and water. LMO is a member of the family of alpha-hydroxy acid oxidases. It is thought to be a homooctamer with two- and four- fold axes in the center of the octamer. |
| >PRK02412 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=94.97 E-value=0.58 Score=42.67 Aligned_cols=122 Identities=14% Similarity=0.177 Sum_probs=82.7
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEe--eeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecC---
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDV--MDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVE--- 126 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDI--mDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~d--- 126 (281)
+-.+..+|+.+|...+..++.++++.+.+.|+|.+++.+ .+. .++...-.+.+..+++. .+.|+.+++-..+
T Consensus 11 ~~~~~~~i~v~l~~~~~~e~~~~~~~~~~~~aD~vElRlD~l~~--~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG 88 (253)
T PRK02412 11 IGEGAPKIIVPIMGKTLEEVLAEALAISKYDADIIEWRADFLEK--ISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGG 88 (253)
T ss_pred eCCCCcEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEechhhc--cCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCC
Confidence 445567899999988888888888888878899988752 222 11122223455566653 4679998887653
Q ss_pred -----hhhH---HHHHHHcC-CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECC--CCC
Q 023494 127 -----PEQR---VPDFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--ATS 177 (281)
Q Consensus 127 -----p~~~---i~~~~~aG-Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p--~t~ 177 (281)
...| ++.+.+.| +|+|-+-... +.+...++++.+++.|.++-+..+. .||
T Consensus 89 ~~~~~~~~~~~ll~~~~~~~~~d~vDiEl~~-~~~~~~~l~~~~~~~~~kvI~S~H~f~~tP 149 (253)
T PRK02412 89 EIALSDEEYLALIKAVIKSGLPDYIDVELFS-GKDVVKEMVAFAHEHGVKVVLSYHDFEKTP 149 (253)
T ss_pred CCCCCHHHHHHHHHHHHhcCCCCEEEEeccC-ChHHHHHHHHHHHHcCCEEEEeeCCCCCCc
Confidence 1223 44567778 8999987654 2345677888889999999988763 455
|
|
| >TIGR00190 thiC thiamine biosynthesis protein ThiC | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.7 Score=42.29 Aligned_cols=189 Identities=22% Similarity=0.280 Sum_probs=97.5
Q ss_pred ceEeEEE-eccCccCHHHHHHHH---HHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCee----------E--E
Q 023494 58 IIVSPSI-LSANFAKLGEQVKAV---ELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD----------V--H 121 (281)
Q Consensus 58 ~~i~pSi-la~D~~~l~~~l~~l---~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~id----------a--H 121 (281)
.++.+.| -+.|..+++.+++.+ ++.|+|. |||-..-.++ ..+-+.|-+.++.|+- + .
T Consensus 61 tKVNaNIGtS~~~~d~~~E~~K~~~A~~~GADt----iMDLStGgdl---~~iR~~il~~s~vpvGTVPiYqa~~~~~~~ 133 (423)
T TIGR00190 61 TKVNANIGTSADTSDIEEEVEKALIAIKYGADT----VMDLSTGGDL---DEIRKAILDAVPVPVGTVPIYQAAEKVHGA 133 (423)
T ss_pred eEEEeeecCCCCCCCHHHHHHHHHHHHHcCCCe----EeeccCCCCH---HHHHHHHHHcCCCCccCccHHHHHHHhcCC
Confidence 4677777 566778888777665 5889986 4663221221 0111222122222221 0 0
Q ss_pred EEecChhh---HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-------------CCCCCH-HHHHHh
Q 023494 122 LMIVEPEQ---RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-------------NPATSL-SAIECV 184 (281)
Q Consensus 122 Lmv~dp~~---~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-------------~p~t~i-e~~~~~ 184 (281)
+.=.++.. .++.-++-|.|++|+|+-- ..+.++.+++.|...|++= +-+.|+ +.+.++
T Consensus 134 ~~~mt~d~~~~~ie~qa~dGVDfmTiH~Gi-----~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~~~~ENPlye~fD~l 208 (423)
T TIGR00190 134 VEDMDEDDMFRAIEKQAKDGVDFMTIHAGV-----LLEYVERLKRSGRITGIVSRGGAILAAWMLHHHKENPLYKNFDYI 208 (423)
T ss_pred hhhCCHHHHHHHHHHHHHhCCCEEEEccch-----hHHHHHHHHhCCCccCeecCcHHHHHHHHHHcCCcCchHHHHHHH
Confidence 11123333 3555577899999999863 3567888888887777651 233455 333333
Q ss_pred h---ccCCEEEEEe--ecCCCCCCccchhHHH---HHHHHHHHhhhcCCCCeEEEecCCChhcHH------HHHHcCCcE
Q 023494 185 L---DVVDLVLIMS--VNPGFGGQSFIESQVK---KISDLRRMCLEKGVNPWIEVDGGVGPKNAY------KVIEAGANA 250 (281)
Q Consensus 185 l---~~vD~Ilvms--V~pG~~GQ~f~~~~l~---kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~------~~~~aGAD~ 250 (281)
+ ..-|+.+=++ ..||.--..-....+. .+-+|.+...++|.++-|+==|-+-.+.|. +-+-.||=.
T Consensus 209 LeI~~~yDVtlSLGDglRPG~i~DA~D~aQi~El~~lgeL~~rA~e~gVQvMVEGPGHvPl~~I~~nv~lqK~lc~~APf 288 (423)
T TIGR00190 209 LEIAKEYDVTLSLGDGLRPGCIADATDRAQISELITLGELVERAREADVQCMVEGPGHVPLDQIEANVRLQKELCDEAPF 288 (423)
T ss_pred HHHHHHhCeeeeccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCcHHHHHHHHHHHHHhhCCCCe
Confidence 3 3456655432 3576532222222222 233444444445544444444555555433 112347888
Q ss_pred EEEccccc
Q 023494 251 LVAGSAVF 258 (281)
Q Consensus 251 ~VvGSaIf 258 (281)
+|+|--.+
T Consensus 289 YvLGPLvT 296 (423)
T TIGR00190 289 YVLGPLVT 296 (423)
T ss_pred eecCCccc
Confidence 88885544
|
The thiC ortholog is designated thiA in Bacillus subtilis. |
| >TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.24 Score=48.92 Aligned_cols=120 Identities=19% Similarity=0.179 Sum_probs=74.5
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeE-EEEecChhhHHHHHHHcCCCEEEEcccc---
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDV-HLMIVEPEQRVPDFIKAGADIVSVHCEQ--- 148 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~ida-HLmv~dp~~~i~~~~~aGAd~Itvh~Ea--- 148 (281)
+.++.+.++|+|.|++|..+|+-. .-.+.|++||+. ++.++.+ .. .+++ -...+.++|||.|-+..-.
T Consensus 227 ~r~~~L~~aG~d~I~vd~a~g~~~----~~~~~i~~i~~~~~~~~vi~G~v--~t~~-~a~~l~~aGad~i~vg~g~G~~ 299 (450)
T TIGR01302 227 ERAEALVKAGVDVIVIDSSHGHSI----YVIDSIKEIKKTYPDLDIIAGNV--ATAE-QAKALIDAGADGLRVGIGPGSI 299 (450)
T ss_pred HHHHHHHHhCCCEEEEECCCCcHh----HHHHHHHHHHHhCCCCCEEEEeC--CCHH-HHHHHHHhCCCEEEECCCCCcC
Confidence 446678889999999999998531 345678888875 5555554 22 2222 4567889999999654210
Q ss_pred -cc-------ccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 149 -SS-------TIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 149 -~~-------~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
.. .+. +.++.+.+++.|+.+...=.-.|+.+..+.+.-.+|.|++.+...|.
T Consensus 300 ~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpviadGGi~~~~di~kAla~GA~~V~~G~~~a~~ 362 (450)
T TIGR01302 300 CTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIADGGIRYSGDIVKALAAGADAVMLGSLLAGT 362 (450)
T ss_pred CccceecCCCccHHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 00 011 23445556666655433222346777677777779999887665443
|
This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models. |
| >PRK06843 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=94.95 E-value=0.37 Score=47.07 Aligned_cols=79 Identities=19% Similarity=0.305 Sum_probs=55.0
Q ss_pred CcEEEEECCCC-CHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHH
Q 023494 166 AKAGVVLNPAT-SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243 (281)
Q Consensus 166 ~k~Glai~p~t-~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~ 243 (281)
..+|.++.+.. ..++...+++ .+|+|.+=+.+ |. .....+.++++|+.++ +.++.+.+-.+.+.+..+
T Consensus 142 l~v~aavg~~~~~~~~v~~lv~aGvDvI~iD~a~----g~--~~~~~~~v~~ik~~~p----~~~vi~g~V~T~e~a~~l 211 (404)
T PRK06843 142 LRVGAAVSIDIDTIERVEELVKAHVDILVIDSAH----GH--STRIIELVKKIKTKYP----NLDLIAGNIVTKEAALDL 211 (404)
T ss_pred eEEEEEEeCCHHHHHHHHHHHhcCCCEEEEECCC----CC--ChhHHHHHHHHHhhCC----CCcEEEEecCCHHHHHHH
Confidence 56788887642 2466777766 49999874444 21 2345566777777654 345655666679999999
Q ss_pred HHcCCcEEEEc
Q 023494 244 IEAGANALVAG 254 (281)
Q Consensus 244 ~~aGAD~~VvG 254 (281)
.++|||.+.+|
T Consensus 212 ~~aGaD~I~vG 222 (404)
T PRK06843 212 ISVGADCLKVG 222 (404)
T ss_pred HHcCCCEEEEC
Confidence 99999999988
|
|
| >TIGR01418 PEP_synth phosphoenolpyruvate synthase | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.18 Score=53.22 Aligned_cols=118 Identities=14% Similarity=0.067 Sum_probs=86.4
Q ss_pred HcCCCE--EEEcccccccccHHHHHHHHHHcC-------CcEEEEECCCCCHHHHHHhhccCCEEEEEeecC--------
Q 023494 136 KAGADI--VSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-------- 198 (281)
Q Consensus 136 ~aGAd~--Itvh~Ea~~~~~i~~~l~~ik~~G-------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p-------- 198 (281)
+.|+.. |.|+.-. +.+++.++.+.++..| ..+|+.+....-+..+++++..+|++.+.+-+-
T Consensus 625 d~G~~~~~Im~PmV~-s~eE~~~~~~~~~~~g~~~~~~~~~vg~mIEtp~av~~~d~Ia~~vDfisIGtnDLtq~~lg~d 703 (782)
T TIGR01418 625 EMGLTNVEVMIPFVR-TPEEGKRALEIMAEEGLRRGKNGLEVYVMCEVPSNALLADEFAKEFDGFSIGSNDLTQLTLGVD 703 (782)
T ss_pred hcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEECcHHHHHHHHHHHHhCCEEEECchHHHHHHhCcc
Confidence 668877 6666544 3566777777777654 457778865556678888888899998754322
Q ss_pred ------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEEEccc
Q 023494 199 ------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 ------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~VvGSa 256 (281)
|.-++...|.+++-|+++.+-.+++| .++.+-|. .+++.++.+++.|++.+.+++.
T Consensus 704 R~n~~~~~~~~~~hPaV~~~i~~vi~~a~~~g--~~vgicge~~~~~p~~~~~l~~~G~~~ls~~~d 768 (782)
T TIGR01418 704 RDSGLVAHLFDERNPAVLRLIEMAIKAAKEHG--KKVGICGQAPSDYPEVVEFLVEEGIDSISLNPD 768 (782)
T ss_pred CCchhhcccCCCCCHHHHHHHHHHHHHHHhcC--CeEEEeCCCCCCCHHHHHHHHHcCCCEEEECcc
Confidence 12356778999999999888877654 56777663 2689999999999999999954
|
Also called pyruvate,water dikinase and PEP synthase. The member from Methanococcus jannaschii contains a large intein. This enzyme generates phosphoenolpyruvate (PEP) from pyruvate, hydrolyzing ATP to AMP and releasing inorganic phosphate in the process. The enzyme shows extensive homology to other enzymes that use PEP as substrate or product. This enzyme may provide PEP for gluconeogenesis, for PTS-type carbohydrate transport systems, or for other processes. |
| >PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed | Back alignment and domain information |
|---|
Probab=94.91 E-value=1 Score=41.95 Aligned_cols=183 Identities=13% Similarity=0.172 Sum_probs=113.2
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
.|+..+.-.++.+++.+...| +-+-.++ |.+ +.+-..+++.+.+..+.|+-+||==.....++..++++|.+.|-+
T Consensus 26 ~n~e~~~avi~AAee~~sPvI-iq~~~~~~~~~g-~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftSVM~ 103 (284)
T PRK09195 26 HNLETMQVVVETAAELHSPVI-IAGTPGTFSYAG-TEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRSVMI 103 (284)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcChhHHhhCC-HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCEEEe
Confidence 344455566777777777765 4444442 221 111122344444446789999985544455788999999887766
Q ss_pred ccccccc----ccHHHHHHHHHHcCCcE----EEE--------EC----CCCCHHHHHHhhc--cCCEEEE--EeecCCC
Q 023494 145 HCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LN----PATSLSAIECVLD--VVDLVLI--MSVNPGF 200 (281)
Q Consensus 145 h~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~----p~t~ie~~~~~l~--~vD~Ilv--msV~pG~ 200 (281)
=.-..+. ..-.++.+.++..|+-+ |-. .. .-|..+..+++.. .+|.+.+ .++|--+
T Consensus 104 DgS~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y 183 (284)
T PRK09195 104 DGSHLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVEATGIDSLAVAIGTAHGMY 183 (284)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHHHHCcCEEeeccCcccccc
Confidence 5433221 12457778888888654 221 01 1367777888876 4887654 3444222
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEccccc
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
.+.+ .-.+++|+++++.+ ++++..=|| +..+.++++++.|+.-+=+++.+.
T Consensus 184 ~~~p--~Ld~~~L~~I~~~~-----~vPLVLHGgSG~~~e~~~~ai~~Gi~KiNi~T~l~ 236 (284)
T PRK09195 184 KGEP--KLDFDRLENIRQWV-----NIPLVLHGASGLPTKDIQQTIKLGICKVNVATELK 236 (284)
T ss_pred CCCC--cCCHHHHHHHHHHh-----CCCeEEecCCCCCHHHHHHHHHcCCeEEEeCcHHH
Confidence 2311 12266777777664 367877775 557899999999999999999886
|
|
| >cd04736 MDH_FMN Mandelate dehydrogenase (MDH)-like FMN-binding domain | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.25 Score=47.52 Aligned_cols=108 Identities=20% Similarity=0.303 Sum_probs=68.2
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc--hhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI--ESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~--~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.++++++. +..+.+ .--...+..+...+ .+|.|.+ + + .+|..+. +..++-+.++++.. +.+|.+
T Consensus 226 ~~i~~ir~~~~~pvii--KgV~~~eda~~a~~~G~d~I~V-S-n--hGGrqld~~~~~~~~L~ei~~~~-----~~~vi~ 294 (361)
T cd04736 226 QDLRWLRDLWPHKLLV--KGIVTAEDAKRCIELGADGVIL-S-N--HGGRQLDDAIAPIEALAEIVAAT-----YKPVLI 294 (361)
T ss_pred HHHHHHHHhCCCCEEE--ecCCCHHHHHHHHHCCcCEEEE-C-C--CCcCCCcCCccHHHHHHHHHHHh-----CCeEEE
Confidence 367777764 333222 22245666666665 4899876 2 2 2333333 44566677766543 268899
Q ss_pred ecCCC-hhcHHHHHHcCCcEEEEcccccC------CCCHHHHHHHHHHhc
Q 023494 232 DGGVG-PKNAYKVIEAGANALVAGSAVFG------AKDYAEAIKGIKTSK 274 (281)
Q Consensus 232 DGGI~-~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~~~~l~~~~ 274 (281)
||||. ...+-+.+..|||.+.+|+.+.. .+-....++.|++.+
T Consensus 295 dGGIr~g~Dv~KALaLGA~aV~iGr~~l~~la~~G~~gv~~~l~~l~~el 344 (361)
T cd04736 295 DSGIRRGSDIVKALALGANAVLLGRATLYGLAARGEAGVSEVLRLLKEEI 344 (361)
T ss_pred eCCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 99999 56888899999999999998762 123445555555543
|
MDH is part of a widespread family of homologous FMN-dependent a-hydroxy acid oxidizing enzymes that oxidizes (S)-mandelate to phenylglyoxalate. MDH is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). |
| >TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial | Back alignment and domain information |
|---|
Probab=94.81 E-value=0.34 Score=45.96 Aligned_cols=125 Identities=15% Similarity=0.184 Sum_probs=74.2
Q ss_pred CCeeEEEEecChh-hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhcc---CCE
Q 023494 116 LPLDVHLMIVEPE-QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDV---VDL 190 (281)
Q Consensus 116 ~~idaHLmv~dp~-~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~~---vD~ 190 (281)
.||.+-=|..... +....+.+.|.-.+..- - +.++..+.++..+..++.+++++.... ..+++.++.+. +|+
T Consensus 35 ~P~~inAM~t~in~~LA~~a~~~G~~~i~hK-~--~~E~~~sfvrk~k~~~L~v~~SvG~t~e~~~r~~~lv~a~~~~d~ 111 (321)
T TIGR01306 35 LPVVPANMQTIIDEKLAEQLAENGYFYIMHR-F--DEESRIPFIKDMQERGLFASISVGVKACEYEFVTQLAEEALTPEY 111 (321)
T ss_pred CcEEeeccchhhhHHHHHHHHHcCCEEEEec-C--CHHHHHHHHHhccccccEEEEEcCCCHHHHHHHHHHHhcCCCCCE
Confidence 4444444533222 23445566664433332 1 234455556666555666666664332 23566666653 588
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
|.+=+.| | .....++.|+++|+..+ .+..+.|+|. .+.++.+.++|||.+.+|
T Consensus 112 i~~D~ah----g--~s~~~~~~i~~i~~~~p-----~~~vi~GnV~t~e~a~~l~~aGad~I~V~ 165 (321)
T TIGR01306 112 ITIDIAH----G--HSNSVINMIKHIKTHLP-----DSFVIAGNVGTPEAVRELENAGADATKVG 165 (321)
T ss_pred EEEeCcc----C--chHHHHHHHHHHHHhCC-----CCEEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 7653222 2 33467888888888753 2455777676 889999999999999888
|
A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages. |
| >cd08207 RLP_NonPhot Ribulose bisphosphate carboxylase like proteins from nonphototrophic bacteria | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.35 Score=47.32 Aligned_cols=94 Identities=18% Similarity=0.276 Sum_probs=61.2
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+-.+..|+ |..-+.|++....|-.+.++=.......+|-|- +|...+.+..+.+.+.|++.+.+|++
T Consensus 174 D~IKDDE~l~~q~-~~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~------ 245 (406)
T cd08207 174 DFIKDDELLANPP-YSPLDERVRAVMRVINDHAQRTGRKVMYAFNIT-DDIDEMRRNHDLVVEAGGTCVMVSLN------ 245 (406)
T ss_pred CcccccccCCCCC-CCcHHHHHHHHHHHHHHHHHhhCCcceEEEecC-CCHHHHHHHHHHHHHhCCCeEEEecc------
Confidence 3444444443333 333344455555554444443444456677776 56888888888899999999888743
Q ss_pred cccCCHHHHHHcCcCCCCCeeEEE
Q 023494 99 NITIGPLVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 99 n~~~G~~~I~~ir~~t~~~idaHL 122 (281)
..|...++.+|+.++.++.+|=
T Consensus 246 --~~G~~~l~~l~~~~~l~IhaHr 267 (406)
T cd08207 246 --SVGLSGLAALRRHSQLPIHGHR 267 (406)
T ss_pred --ccchHHHHHHHhcCCceEEECC
Confidence 4577889999888888888773
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=94.79 E-value=1.1 Score=41.76 Aligned_cols=166 Identities=23% Similarity=0.201 Sum_probs=99.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcC-C---CCCeeEEEEecChhhHHHHHHHc--CCC--EEEE
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPV-T---DLPLDVHLMIVEPEQRVPDFIKA--GAD--IVSV 144 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~-t---~~~idaHLmv~dp~~~i~~~~~a--GAd--~Itv 144 (281)
+.++.|.+.|++.|++ | | |..+-.. +.++.|.+. . +..+-+ .+-+....++.+.++ |++ .|++
T Consensus 27 ~ia~~L~~~Gv~~IE~----g-f-P~~~~~e~e~~~~i~~~~~~~~~~~~~a--l~r~~~~die~a~~~~~~~~~~~v~i 98 (284)
T cd07942 27 RFFKLLVKIGFKEIEV----G-F-PSASQTDFDFVRELIEEDLIPDDVTIQV--LTQAREDLIERTFEALRGAKKAIVHL 98 (284)
T ss_pred HHHHHHHHcCCCEEEE----e-C-CCCCHHHHHHHHHHHHccCCCCCCEEEE--EcCCChhhHHHHHHHhCCCCCCEEEE
Confidence 4556778899998888 4 5 7666555 778887332 1 222222 223333347777776 666 4544
Q ss_pred ccccc--------------ccccHHHHHHHHHHcCCc-----EEEEECC----CCCHHHHHHhhccC--------C---E
Q 023494 145 HCEQS--------------STIHLHRTLNQIKDLGAK-----AGVVLNP----ATSLSAIECVLDVV--------D---L 190 (281)
Q Consensus 145 h~Ea~--------------~~~~i~~~l~~ik~~G~k-----~Glai~p----~t~ie~~~~~l~~v--------D---~ 190 (281)
-.-++ ..+.+.+.++.+|++|++ .++-+.+ .++.+.+.++...+ | .
T Consensus 99 ~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~~~l~~~~~~~~~~~~~g~~~~~~ 178 (284)
T cd07942 99 YNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTELDFALEVCEAVIDVWQPTPENKII 178 (284)
T ss_pred EEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCHHHHHHHHHHHHHhhcCCCCcceE
Confidence 42211 011245566778888864 4667777 57777777765432 2 2
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
|. -|-.-|.....++.+.++.+++.++.. .+.++++ |-|....|.-..+++|++.|=
T Consensus 179 i~----laDTvG~a~P~~v~~~~~~l~~~~~~~-~~~~~~~H~Hnd~G~a~AN~laA~~aG~~~id 239 (284)
T cd07942 179 LN----LPATVEVATPNVYADQIEWFCRNLSRR-ESVIISLHPHNDRGTGVAAAELALLAGADRVE 239 (284)
T ss_pred EE----ccccccccCHHHHHHHHHHHHHhcCCC-CCceEEEEecCCCchHHHHHHHHHHhCCCEEE
Confidence 32 234445544455667777777765421 1244665 778888898889999999865
|
Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong |
| >TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family | Back alignment and domain information |
|---|
Probab=94.76 E-value=0.48 Score=44.76 Aligned_cols=186 Identities=13% Similarity=0.117 Sum_probs=96.9
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC--CHHHHHHcCcCCCCCeeEEEEe---------cC---hhhHHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMI---------VE---PEQRVP 132 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~--G~~~I~~ir~~t~~~idaHLmv---------~d---p~~~i~ 132 (281)
.++..+.+.++.+.+.|++.+++ ..|. -|...+ -.++++.||+.. ..+.+|-++ .+ ..+.++
T Consensus 72 ls~eei~~~~~~~~~~G~~~i~l--~gG~-~p~~~~~~~~~li~~Ik~~~-~~i~~~~~s~~ei~~~~~~~g~~~~e~l~ 147 (340)
T TIGR03699 72 LSVEEILQKIEELVAYGGTQILL--QGGV-NPDLGLDYYEDLFRAIKARF-PHIHIHSFSPVEIVYIAKKEGLSLREVLE 147 (340)
T ss_pred CCHHHHHHHHHHHHHcCCcEEEE--ecCC-CCCCCHHHHHHHHHHHHHHC-CCcCCCCCCHHHHHHHhccCCCCHHHHHH
Confidence 34456666677777889998877 4543 343322 235677777642 112222211 01 134567
Q ss_pred HHHHcCCCEEEE-ccccc-------------ccccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc---c--CCEE
Q 023494 133 DFIKAGADIVSV-HCEQS-------------STIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD---V--VDLV 191 (281)
Q Consensus 133 ~~~~aGAd~Itv-h~Ea~-------------~~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~---~--vD~I 191 (281)
.+.++|.+.+.. ..|.. +.++..++++.+++.|+++. +.+.+....+...+.+. . ++.+
T Consensus 148 ~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~l~~i~~a~~~Gi~v~~~~iiGlgEt~ed~~~~l~~l~~l~~~~~ 227 (340)
T TIGR03699 148 RLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEWLEVMETAHKLGLPTTATMMFGHVETLEDRIEHLERIRELQDKTG 227 (340)
T ss_pred HHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCccceeEeeCCCCHHHHHHHHHHHHHhchhhC
Confidence 889999998762 22321 12235678888899998764 55665554443333322 1 3332
Q ss_pred EEE---ee--cC-CCC--CCcc--chhHHHHHHHHHHHhhhcCCCCeEEEecCC---ChhcHHHHHHcCCcE----EEEc
Q 023494 192 LIM---SV--NP-GFG--GQSF--IESQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANA----LVAG 254 (281)
Q Consensus 192 lvm---sV--~p-G~~--GQ~f--~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI---~~e~i~~~~~aGAD~----~VvG 254 (281)
.++ .. .| |.. ..+. ..+.++.|.-.|-+++. .+-+.||- ..+....+..+|||. ++.|
T Consensus 228 ~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~-----~~~i~~~~~~~g~~~~~~~l~~Gan~~~g~~~~~ 302 (340)
T TIGR03699 228 GFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDN-----IPNIQASWVTQGKEVGQLALHFGANDFGSTMLEE 302 (340)
T ss_pred CeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCC-----CCcccCCccccChHHHHHHHhcCCccCCCccccc
Confidence 222 11 12 321 1111 13345555555555542 22345553 234456789999997 5556
Q ss_pred ccccCCC
Q 023494 255 SAVFGAK 261 (281)
Q Consensus 255 SaIf~a~ 261 (281)
..+..+.
T Consensus 303 ~~~~~~g 309 (340)
T TIGR03699 303 NVVAAAG 309 (340)
T ss_pred cccccCC
Confidence 6665443
|
members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine. |
| >PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.5 Score=45.09 Aligned_cols=112 Identities=18% Similarity=0.210 Sum_probs=68.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHH-HcCCcEEEEECCC-CCHHHHHHhhc---cCCEEEEEeecCCCCCCc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK-DLGAKAGVVLNPA-TSLSAIECVLD---VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik-~~G~k~Glai~p~-t~ie~~~~~l~---~vD~IlvmsV~pG~~GQ~ 204 (281)
....+.+.|. .-.+|=.. +.++..+.++..+ +.+..+-+++... ...+++..+++ .+|+|.+=+.| |
T Consensus 62 mA~~la~~g~-~~~iHk~~-~~e~~~~fv~~~~~~~~~~~~vavG~~~~d~er~~~L~~~~~g~D~iviD~Ah-G----- 133 (346)
T PRK05096 62 MAKALASFDI-LTAVHKHY-SVEEWAAFVNNSSADVLKHVMVSTGTSDADFEKTKQILALSPALNFICIDVAN-G----- 133 (346)
T ss_pred HHHHHHHCCC-eEEEecCC-CHHHHHHHHHhccccccceEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC-C-----
Confidence 4445566653 33344322 2333444444444 2234555555433 34577777776 48998764333 2
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.....++.|+++|+.+++ ..| +.|.|- .+....++++|||++-||
T Consensus 134 hs~~~i~~ik~ik~~~P~----~~v-IaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 134 YSEHFVQFVAKAREAWPD----KTI-CAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred cHHHHHHHHHHHHHhCCC----CcE-EEecccCHHHHHHHHHcCCCEEEEc
Confidence 345678888888887653 444 677775 889999999999999877
|
|
| >TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.47 Score=45.25 Aligned_cols=112 Identities=16% Similarity=0.210 Sum_probs=67.2
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHH-HcCCcEEEEECCC-CCHHHHHHhhcc---CCEEEEEeecCCCCCCc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK-DLGAKAGVVLNPA-TSLSAIECVLDV---VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik-~~G~k~Glai~p~-t~ie~~~~~l~~---vD~IlvmsV~pG~~GQ~ 204 (281)
....+.+.|. .-.+|=.. +.++..+.++..+ +.+..+-+++... ...++++.+++. +|+|.+=+.| |
T Consensus 61 mA~~la~~g~-~~~iHk~~-~~e~~~~~v~~~~~~~~~~~~vsvG~~~~d~er~~~L~~a~~~~d~iviD~Ah-G----- 132 (343)
T TIGR01305 61 MAAALSQHSI-FTAIHKHY-SVDEWKAFATNSSPDCLQNVAVSSGSSDNDLEKMTSILEAVPQLKFICLDVAN-G----- 132 (343)
T ss_pred HHHHHHHCCC-eEEEeeCC-CHHHHHHHHHhhcccccceEEEEeccCHHHHHHHHHHHhcCCCCCEEEEECCC-C-----
Confidence 4445566652 33344322 1333334443322 2344555555433 245777777765 7998764333 2
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEc
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvG 254 (281)
.....++.|+++|+..+. ...+.|.| +++.+..++++|||.+.||
T Consensus 133 hs~~~i~~ik~ir~~~p~-----~~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 133 YSEHFVEFVKLVREAFPE-----HTIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred cHHHHHHHHHHHHhhCCC-----CeEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 334678888888887653 24466745 5999999999999999988
|
A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences. |
| >cd00423 Pterin_binding Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.69 E-value=2.4 Score=38.65 Aligned_cols=100 Identities=21% Similarity=0.183 Sum_probs=58.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc---------cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI---------TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~---------~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.|.....+..+.+.+.|+|+| ||==+..-|+- .-=..+++.+++.++.|+- +-+.+|. .++.+.++
T Consensus 21 ~~~~~~~~~a~~~~~~GAdiI--DvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piS--IDT~~~~-v~~aaL~~ 95 (258)
T cd00423 21 LSLDKALEHARRMVEEGADII--DIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPIS--VDTFNAE-VAEAALKA 95 (258)
T ss_pred CCHHHHHHHHHHHHHCCCCEE--EECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEE--EeCCcHH-HHHHHHHh
Confidence 455566666677778899986 43322222321 0011345555554455543 3456665 66778889
Q ss_pred CCCEEEEc-ccccccccHHHHHHHHHHcCCcEEEEECCC
Q 023494 138 GADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175 (281)
Q Consensus 138 GAd~Itvh-~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~ 175 (281)
|+++|-=- .+ ..+ .+.++.++++|+.+.+.-..+
T Consensus 96 g~~iINdis~~---~~~-~~~~~l~~~~~~~vV~m~~~~ 130 (258)
T cd00423 96 GADIINDVSGG---RGD-PEMAPLAAEYGAPVVLMHMDG 130 (258)
T ss_pred CCCEEEeCCCC---CCC-hHHHHHHHHcCCCEEEECcCC
Confidence 98876432 22 112 567888899998777765433
|
This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.4 Score=46.72 Aligned_cols=114 Identities=17% Similarity=0.224 Sum_probs=77.4
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhc-----cCCEEEEEeecCC
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLD-----VVDLVLIMSVNPG 199 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~-----~vD~IlvmsV~pG 199 (281)
+|++++++.|.|.+-+-..-.+..+++..++.+|+.|..+..++ +|-..++.+.++.+ .+|.|.+= .
T Consensus 102 ~Fv~ka~~nGidvfRiFDAlND~RNl~~ai~a~kk~G~h~q~~i~YT~sPvHt~e~yv~~akel~~~g~DSIciK----D 177 (472)
T COG5016 102 KFVEKAAENGIDVFRIFDALNDVRNLKTAIKAAKKHGAHVQGTISYTTSPVHTLEYYVELAKELLEMGVDSICIK----D 177 (472)
T ss_pred HHHHHHHhcCCcEEEechhccchhHHHHHHHHHHhcCceeEEEEEeccCCcccHHHHHHHHHHHHHcCCCEEEee----c
Confidence 57888889999988765432135678899999999999887665 44444454444433 27888652 1
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
-+|-.-.....+-++.+++.++ ++|.+ .-|+..-+.-..++||||++
T Consensus 178 maGlltP~~ayelVk~iK~~~~-----~pv~lHtH~TsG~a~m~ylkAvEAGvD~i 228 (472)
T COG5016 178 MAGLLTPYEAYELVKAIKKELP-----VPVELHTHATSGMAEMTYLKAVEAGVDGI 228 (472)
T ss_pred ccccCChHHHHHHHHHHHHhcC-----CeeEEecccccchHHHHHHHHHHhCcchh
Confidence 2332222344677888877653 55554 67888888888999999987
|
|
| >COG0042 tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.65 E-value=0.85 Score=43.19 Aligned_cols=142 Identities=18% Similarity=0.237 Sum_probs=94.7
Q ss_pred CCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHHcC--CcEEEEECC
Q 023494 115 DLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDLG--AKAGVVLNP 174 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~G--~k~Glai~p 174 (281)
..|+.++|-.+||....+ .+.+.|+|.|=+-.-+. ..+.+.++++++++.. +.+-+=+.-
T Consensus 66 e~p~~vQl~gsdp~~l~eaA~~~~~~g~~~IdlN~GCP~~~V~~~g~Ga~Ll~~p~lv~~iv~a~~~av~~iPVTVKiRl 145 (323)
T COG0042 66 ERPVAVQLGGSDPELLAEAAKIAEELGADIIDLNCGCPSPKVVKGGAGAALLKNPELLAEIVKAMVEAVGDIPVTVKIRL 145 (323)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHhcCCCEEeeeCCCChHHhcCCCcchhhcCCHHHHHHHHHHHHHhhCCCCeEEEEec
Confidence 478999999999975533 34577888877653321 1234678888888875 455554433
Q ss_pred CCCH-----HHHHHhhcc--CCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH
Q 023494 175 ATSL-----SAIECVLDV--VDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 245 (281)
Q Consensus 175 ~t~i-----e~~~~~l~~--vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~ 245 (281)
+.+. ..+...+.. ++.+.|+ .-...|.+. |.-++.|+++++.++. ++|..-|+|. .+.+.++++
T Consensus 146 G~d~~~~~~~~ia~~~~~~g~~~ltVH---gRtr~~~y~~~ad~~~I~~vk~~~~~----ipvi~NGdI~s~~~a~~~l~ 218 (323)
T COG0042 146 GWDDDDILALEIARILEDAGADALTVH---GRTRAQGYLGPADWDYIKELKEAVPS----IPVIANGDIKSLEDAKEMLE 218 (323)
T ss_pred ccCcccccHHHHHHHHHhcCCCEEEEe---cccHHhcCCCccCHHHHHHHHHhCCC----CeEEeCCCcCCHHHHHHHHH
Confidence 3322 223444432 7777654 333344443 3557888888887642 7888999985 899998887
Q ss_pred c-CCcEEEEcccccCCCCH
Q 023494 246 A-GANALVAGSAVFGAKDY 263 (281)
Q Consensus 246 a-GAD~~VvGSaIf~a~dp 263 (281)
. |+|.+.+|++.++.+..
T Consensus 219 ~tg~DgVMigRga~~nP~l 237 (323)
T COG0042 219 YTGADGVMIGRGALGNPWL 237 (323)
T ss_pred hhCCCEEEEcHHHccCCcH
Confidence 5 69999999999876654
|
|
| >KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.69 Score=44.29 Aligned_cols=140 Identities=14% Similarity=0.182 Sum_probs=92.1
Q ss_pred CCCeeEEEEecChhhHHHHH--HHcCCCEEEEccccc---------------ccccHHHHHHHHHHc-CCcEEEEECCCC
Q 023494 115 DLPLDVHLMIVEPEQRVPDF--IKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~~~--~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~-G~k~Glai~p~t 176 (281)
+.|+.+.+-.+||..+.+.+ .+.=+|.|-+-+-+. ..+-+.+.++.++++ |..+-+=|.-..
T Consensus 73 D~PLIvQf~~ndp~~ll~Aa~lv~~y~D~idlNcGCPq~~a~~g~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~ 152 (358)
T KOG2335|consen 73 DRPLIVQFGGNDPENLLKAARLVQPYCDGIDLNCGCPQKVAKRGGYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFV 152 (358)
T ss_pred CCceEEEEcCCCHHHHHHHHHHhhhhcCcccccCCCCHHHHhcCCccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecC
Confidence 57999999999999776543 333347666543221 112356777777753 555444333333
Q ss_pred CHHHHHHh---hc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH-cCCc
Q 023494 177 SLSAIECV---LD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE-AGAN 249 (281)
Q Consensus 177 ~ie~~~~~---l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~-aGAD 249 (281)
+++.-..| +. .++++.|.+.-+-..|.+..|..++.|+.+++.+++ +++-+-|||. .+.+..+.+ .|||
T Consensus 153 d~~kTvd~ak~~e~aG~~~ltVHGRtr~~kg~~~~pad~~~i~~v~~~~~~----ipviaNGnI~~~~d~~~~~~~tG~d 228 (358)
T KOG2335|consen 153 DLEKTVDYAKMLEDAGVSLLTVHGRTREQKGLKTGPADWEAIKAVRENVPD----IPVIANGNILSLEDVERCLKYTGAD 228 (358)
T ss_pred cHHHHHHHHHHHHhCCCcEEEEecccHHhcCCCCCCcCHHHHHHHHHhCcC----CcEEeeCCcCcHHHHHHHHHHhCCc
Confidence 34332222 22 267887765555445655667778889998887653 7888999999 788888877 9999
Q ss_pred EEEEccccc
Q 023494 250 ALVAGSAVF 258 (281)
Q Consensus 250 ~~VvGSaIf 258 (281)
++-+|+++.
T Consensus 229 GVM~arglL 237 (358)
T KOG2335|consen 229 GVMSARGLL 237 (358)
T ss_pred eEEecchhh
Confidence 999998754
|
|
| >PLN02979 glycolate oxidase | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.34 Score=46.70 Aligned_cols=96 Identities=11% Similarity=0.230 Sum_probs=64.0
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++|+. +..+.+ ..-...+..+...+ .+|.|.+- .+ |-.+....|.+++-|.++++.... +++|.+||
T Consensus 213 ~dl~wlr~~~~~Pviv--KgV~~~~dA~~a~~~Gvd~I~Vs-nh-GGrqld~~p~t~~~L~ei~~~~~~---~~~Vi~dG 285 (366)
T PLN02979 213 KDVQWLQTITKLPILV--KGVLTGEDARIAIQAGAAGIIVS-NH-GARQLDYVPATISALEEVVKATQG---RIPVFLDG 285 (366)
T ss_pred HHHHHHHhccCCCEEe--ecCCCHHHHHHHHhcCCCEEEEC-CC-CcCCCCCchhHHHHHHHHHHHhCC---CCeEEEeC
Confidence 457777765 444433 22234566666555 48999763 33 323334556677777777766532 47899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
||. -..+-+.+..|||.+-+|+.+.
T Consensus 286 GIr~G~Di~KALALGAdaV~iGrp~L 311 (366)
T PLN02979 286 GVRRGTDVFKALALGASGIFIGRPVV 311 (366)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 4578888999999999998854
|
|
| >PLN03228 methylthioalkylmalate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.57 E-value=0.6 Score=46.92 Aligned_cols=169 Identities=15% Similarity=0.057 Sum_probs=94.0
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCC------CCeeEEEEe-cChh-hHHHHHHHc----CC
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTD------LPLDVHLMI-VEPE-QRVPDFIKA----GA 139 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~------~~idaHLmv-~dp~-~~i~~~~~a----GA 139 (281)
.+.++.|.+.|+|.|++ .| |.. .--.+.++.|.+... ..+..-++. .... ..++.+.++ |+
T Consensus 109 i~Ia~~L~~~GVd~IEv-----G~-Pa~s~~e~e~i~~i~~~~~~~~~~~~~l~~~i~a~~R~~~~dId~a~~a~~~a~~ 182 (503)
T PLN03228 109 LEIARQLAKLRVDIMEV-----GF-PGSSEEEFEAVKTIAKTVGNEVDEETGYVPVICGIARCKKRDIEAAWEALKYAKR 182 (503)
T ss_pred HHHHHHHHHcCCCEEEE-----eC-CCCCHHHHHHHHHHHHhcccccccccccceEEeeecccCHhhHHHHHHhhcccCC
Confidence 34556778899998887 33 422 111234555543210 001122221 1111 135555555 67
Q ss_pred CEEEEccccccccc---------------HHHHHHHHHHcCCc-EEEEE--CCCCCHHHHHHhhcc-----CCEEEEEee
Q 023494 140 DIVSVHCEQSSTIH---------------LHRTLNQIKDLGAK-AGVVL--NPATSLSAIECVLDV-----VDLVLIMSV 196 (281)
Q Consensus 140 d~Itvh~Ea~~~~~---------------i~~~l~~ik~~G~k-~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV 196 (281)
+.|++..-.. ..+ +.+.++.+|+.|.+ +.+.. ...++.+.+.+++.. +|.|.+
T Consensus 183 ~~V~i~i~~S-d~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~f~~EDa~Rtd~efl~~~~~~a~~~Gad~I~l--- 258 (503)
T PLN03228 183 PRILAFTSTS-DIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQFGCEDGGRSDKEFLCKILGEAIKAGATSVGI--- 258 (503)
T ss_pred CEEEEEecCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEEeccccccccCHHHHHHHHHHHHhcCCCEEEE---
Confidence 7787664331 222 45688889999986 33332 223566655555432 677654
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
+-..|-....++.+.++.+++.++.. .+++|++ |-|....|.-..+++||+.+=+
T Consensus 259 -~DTvG~~tP~~v~~lV~~l~~~~~~~-~~i~I~~H~HND~GlAvANslaAi~aGa~~Vd~ 317 (503)
T PLN03228 259 -ADTVGINMPHEFGELVTYVKANTPGI-DDIVFSVHCHNDLGLATANTIAGICAGARQVEV 317 (503)
T ss_pred -ecCCCCCCHHHHHHHHHHHHHHhccc-cCceeEecccCCcChHHHHHHHHHHhCCCEEEE
Confidence 33345444445566777777654321 1245666 7888888888899999998854
|
|
| >TIGR02351 thiH thiazole biosynthesis protein ThiH | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.7 Score=44.36 Aligned_cols=175 Identities=17% Similarity=0.169 Sum_probs=91.5
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc-c--cCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-I--TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~--~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
+...+.+.++.+.+.|+..+++ .-|. .|. . ..=.++++.||+. +...+.+..+ +.+ .++.+.++|++.++
T Consensus 104 s~eEI~~~a~~~~~~Gv~~i~l--vgGe-~p~~~~~e~l~eii~~Ik~~~p~i~Iei~~l--t~e-~~~~Lk~aGv~r~~ 177 (366)
T TIGR02351 104 NEEEIEREIEAIKKSGFKEILL--VTGE-SEKAAGVEYIAEAIKLAREYFSSLAIEVQPL--NEE-EYKKLVEAGLDGVT 177 (366)
T ss_pred CHHHHHHHHHHHHhCCCCEEEE--eeCC-CCCCCCHHHHHHHHHHHHHhCCccccccccC--CHH-HHHHHHHcCCCEEE
Confidence 4455666777777889887765 3343 233 2 2234566666654 2233333222 222 45789999999999
Q ss_pred Ecccccc------------cccH---HHHHHHHHHcCCc-E--EEEECCC-CCHHHHH---------Hhhc----cCCEE
Q 023494 144 VHCEQSS------------TIHL---HRTLNQIKDLGAK-A--GVVLNPA-TSLSAIE---------CVLD----VVDLV 191 (281)
Q Consensus 144 vh~Ea~~------------~~~i---~~~l~~ik~~G~k-~--Glai~p~-t~ie~~~---------~~l~----~vD~I 191 (281)
+-.|+.. ..+. .+.++.+++.|++ + |+.+..+ +..+.+. ...+ .+-+.
T Consensus 178 i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i~Gl~e~~~d~~~~a~~l~~L~~~~~~~~~sv~~~ 257 (366)
T TIGR02351 178 VYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGALLGLDDWRTDAFFTAYHLRYLQKKYWKTEISISVP 257 (366)
T ss_pred EEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEEEeCchhHHHHHHHHHHHHHHHHHcCCCCcccccc
Confidence 9888631 1122 3577888888875 4 4444433 2333222 1111 12233
Q ss_pred EEEeecCC-CCCC-ccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHH-HHHHcCCcEEEEc
Q 023494 192 LIMSVNPG-FGGQ-SFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY-KVIEAGANALVAG 254 (281)
Q Consensus 192 lvmsV~pG-~~GQ-~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~-~~~~aGAD~~VvG 254 (281)
.+|.+ +| +..+ .+.+. .++.|..+|-+++. ..|-+.||=.. .++ .++..|+-.+-+|
T Consensus 258 ~l~P~-~g~~~~~~~l~~~~~~~~i~~~R~~~P~----~~i~~s~g~~~-~lrd~~~~~~~~~~~a~ 318 (366)
T TIGR02351 258 RLRPC-TNGLKPKVIVTDRELVQIICAYRLFDPF----VEISLSTRESK-KFRDNVIPLGITKMSAG 318 (366)
T ss_pred ccccC-CCCCCCCCcCCHHHHHHHHHHHHHhCcc----cccEEecCCCH-HHHHHHHhhcceeeccC
Confidence 34544 33 2222 23333 35556666666654 45778898543 333 2334454444333
|
Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes. |
| >TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.82 Score=43.35 Aligned_cols=182 Identities=15% Similarity=0.159 Sum_probs=97.1
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CCCCeeEEEEe------------cChhhHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TDLPLDVHLMI------------VEPEQRV 131 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~~~idaHLmv------------~dp~~~i 131 (281)
.+...+.++++.+.+.|++.+++ .+|.. |.. .+=.++++.||+. +++. +|..+ .-..+.+
T Consensus 70 ls~eeI~e~~~~~~~~G~~~i~l--~gG~~-p~~~~~~~~~i~~~Ik~~~~~i~--~~~~t~~ei~~~~~~~g~~~~e~l 144 (343)
T TIGR03551 70 LSLEEIAERAAEAWKAGATEVCI--QGGIH-PDLDGDFYLDILRAVKEEVPGMH--IHAFSPMEVYYGARNSGLSVEEAL 144 (343)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--EeCCC-CCCCHHHHHHHHHHHHHHCCCce--EEecCHHHHHHHHHHcCCCHHHHH
Confidence 46667777888888889987665 46643 433 2235678888775 3332 33221 0113467
Q ss_pred HHHHHcCCCEEEE-ccccc-------------ccccHHHHHHHHHHcCCcE--EEEECCCCCHHHHHHhhc---c--CCE
Q 023494 132 PDFIKAGADIVSV-HCEQS-------------STIHLHRTLNQIKDLGAKA--GVVLNPATSLSAIECVLD---V--VDL 190 (281)
Q Consensus 132 ~~~~~aGAd~Itv-h~Ea~-------------~~~~i~~~l~~ik~~G~k~--Glai~p~t~ie~~~~~l~---~--vD~ 190 (281)
+.+.++|.+.+.. ..|.. +.++..+.++.+++.|+++ |+.+......+...+.+. . .++
T Consensus 145 ~~LkeAGl~~i~~~~~E~~~~~v~~~i~~~~~~~~~~~~~i~~a~~~Gi~v~s~~i~G~~Et~ed~~~~l~~lr~l~~~~ 224 (343)
T TIGR03551 145 KRLKEAGLDSMPGTAAEILDDEVRKVICPDKLSTAEWIEIIKTAHKLGIPTTATIMYGHVETPEHWVDHLLILREIQEET 224 (343)
T ss_pred HHHHHhCcccccCcchhhcCHHHHHhcCCCCCCHHHHHHHHHHHHHcCCcccceEEEecCCCHHHHHHHHHHHHHhhHHh
Confidence 8899999998862 22321 1123467888899999987 455654444444333322 1 343
Q ss_pred EEEEee------cCCCC----CCc---cc-hhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEEE
Q 023494 191 VLIMSV------NPGFG----GQS---FI-ESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 191 IlvmsV------~pG~~----GQ~---f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~Vv 253 (281)
..+... +||.. ++. .. .+.+.-|.-.|=+++. ..+-+-|| ++.........+|||.+
T Consensus 225 ~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~----~~~~i~a~~~~l~~~~~~~~l~~Gan~~-- 298 (343)
T TIGR03551 225 GGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHG----LIDNIQASWVKLGKKLAQVALRCGANDL-- 298 (343)
T ss_pred CCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCC----cccCeeccccccCHHHHHHHHhCCCccC--
Confidence 221111 23532 111 11 2334445444544442 21223444 33444578899999976
Q ss_pred cccccC
Q 023494 254 GSAVFG 259 (281)
Q Consensus 254 GSaIf~ 259 (281)
|+.++.
T Consensus 299 ~g~~~~ 304 (343)
T TIGR03551 299 GGTLME 304 (343)
T ss_pred Ccccee
Confidence 434543
|
This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases. |
| >COG1856 Uncharacterized homolog of biotin synthetase [Function unknown] | Back alignment and domain information |
|---|
Probab=94.51 E-value=2.7 Score=38.14 Aligned_cols=180 Identities=22% Similarity=0.272 Sum_probs=102.6
Q ss_pred eccCccCHHHHHHHHHHcCCCeEEE-Eeee-CcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 65 LSANFAKLGEQVKAVELAGCDWIHV-DVMD-GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 65 la~D~~~l~~~l~~l~~~G~d~iHi-DImD-G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
+..+-..|.+....+++-|..-+-+ .=|| -.+||.-.| .+.++++++.+++.+.+|.=..| +.+++.+.+.++|.+
T Consensus 37 i~vt~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl~kf-~d~lK~lke~~~l~inaHvGfvd-E~~~eklk~~~vdvv 114 (275)
T COG1856 37 IKVTTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPLWKF-KDELKALKERTGLLINAHVGFVD-ESDLEKLKEELVDVV 114 (275)
T ss_pred cccchHHHHHHHHHHHhcCceeEEEeCCcCCCCCccHHHH-HHHHHHHHHhhCeEEEEEeeecc-HHHHHHHHHhcCcEE
Confidence 3344444555555677666654322 2344 246775555 46788999989999999999988 779999999999999
Q ss_pred EEccccc------------ccccHHHHHHHHHHcCCcE------EEEECC-CCCHHHHHHhhc-cCCEEEEEeec--CCC
Q 023494 143 SVHCEQS------------STIHLHRTLNQIKDLGAKA------GVVLNP-ATSLSAIECVLD-VVDLVLIMSVN--PGF 200 (281)
Q Consensus 143 tvh~Ea~------------~~~~i~~~l~~ik~~G~k~------Glai~p-~t~ie~~~~~l~-~vD~IlvmsV~--pG~ 200 (281)
++-.-.. +.++.-+.+..++++|+++ |+...- ....+.+.-+.. ..|.+.+--.- ||.
T Consensus 115 sLDfvgDn~vIk~vy~l~ksv~dyl~~l~~L~e~~irvvpHitiGL~~gki~~e~kaIdiL~~~~~DalVl~vliPtpGt 194 (275)
T COG1856 115 SLDFVGDNDVIKRVYKLPKSVEDYLRSLLLLKENGIRVVPHITIGLDFGKIHGEFKAIDILVNYEPDALVLVVLIPTPGT 194 (275)
T ss_pred EEeecCChHHHHHHHcCCccHHHHHHHHHHHHHcCceeceeEEEEeccCcccchHHHHHHHhcCCCCeEEEEEEecCCch
Confidence 9875421 1223345567788899886 333211 123333332222 35654433333 453
Q ss_pred C-CCccc---hhHHHHHHHHHHHhhhcCCCCeEEEecCCCh------hcHHHHHHcCCcEEE
Q 023494 201 G-GQSFI---ESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------KNAYKVIEAGANALV 252 (281)
Q Consensus 201 ~-GQ~f~---~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~------e~i~~~~~aGAD~~V 252 (281)
. +..+. ++..+-++.+|+.++ + ++ +-|=..+ +-=++.+.+|+|.+.
T Consensus 195 km~~~~pp~~eE~i~v~~~AR~~f~----~-pv-~iGCmrP~Ge~rvk~d~~av~~gVd~It 250 (275)
T COG1856 195 KMGNSPPPPVEEAIKVVKYARKKFP----N-PV-SIGCMRPRGEWRVKLDKEAVLAGVDRIT 250 (275)
T ss_pred hccCCCCcCHHHHHHHHHHHHHhCC----C-Ce-eEeecCcCchhHHHHHHHHHHcCCceee
Confidence 2 22232 233444555555543 2 34 2344432 223466788888663
|
|
| >PRK06464 phosphoenolpyruvate synthase; Validated | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.29 Score=51.76 Aligned_cols=123 Identities=15% Similarity=0.121 Sum_probs=87.3
Q ss_pred HHHHHH-cCCCE--EEEcccccccccHHHHHHHHHHcC-------CcEEEEECCCCCHHHHHHhhccCCEEEEEeecC--
Q 023494 131 VPDFIK-AGADI--VSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-- 198 (281)
Q Consensus 131 i~~~~~-aGAd~--Itvh~Ea~~~~~i~~~l~~ik~~G-------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p-- 198 (281)
+..+.+ .|++. |.|+.-. +.++..++.+.++..| ..+|+.+....-+..+++++..+|++.+.+-+-
T Consensus 626 I~rald~~G~~~~~ImvPmV~-s~eEa~~~~~~~~~~g~~~~~~~~~vg~MIEtp~av~~~deIa~~vDfi~IGtnDLtq 704 (795)
T PRK06464 626 IKRVREEMGLTNVEVMIPFVR-TVEEAEKVIELLAENGLKRGENGLKVIMMCEIPSNALLAEEFLEYFDGFSIGSNDLTQ 704 (795)
T ss_pred HHHHHHhcCCCCeEEEecCCC-CHHHHHHHHHHHHHhCccccccCcEEEEEEcCHHHHHHHHHHHHhCCEEEECchHHHH
Confidence 344556 68776 6665543 3566777777776554 457777865556677888888899998854332
Q ss_pred ---C---------CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec---CCChhcHHHHHHcCCcEEEEccc
Q 023494 199 ---G---------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG---GVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 ---G---------~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG---GI~~e~i~~~~~aGAD~~VvGSa 256 (281)
| ..++...|..++-|+++.+-.+++| .++.+-| |-+++.++.+++.|++.+.+++.
T Consensus 705 ~~lg~dR~n~~v~~~~~~~hPav~~ai~~vi~aa~~~g--~~vgicge~a~~~p~~~~~l~~~G~~~ls~~~d 775 (795)
T PRK06464 705 LTLGLDRDSGLVAHLFDERNPAVKKLISMAIKAAKKAG--KYVGICGQAPSDHPDFAEWLVEEGIDSISLNPD 775 (795)
T ss_pred HHhCcCCCchhhhhccCCCCHHHHHHHHHHHHHHHHcC--CEEEEcCCCCCCcHHHHHHHHHCCCCEEEEcch
Confidence 1 1356678999999999888877654 5677755 33388999999999999999954
|
|
| >PRK07084 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=2 Score=40.80 Aligned_cols=186 Identities=14% Similarity=0.139 Sum_probs=109.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCc---CC--CCCeeEEEEecChhhHHHHHHHcCCC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRP---VT--DLPLDVHLMIVEPEQRVPDFIKAGAD 140 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~---~t--~~~idaHLmv~dp~~~i~~~~~aGAd 140 (281)
|+..+.-.++.+++.+...| +-+-.+. |.+. .+-..++..++. .. ..|+-+||==..-...+..++++|.+
T Consensus 33 n~e~~~avi~AAee~~sPvI-lq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~Gft 110 (321)
T PRK07084 33 NMEQLQAIIQACVETKSPVI-LQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGFS 110 (321)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence 44445566677777777765 4444432 2220 001122322222 12 57899988554444578889999988
Q ss_pred EEEEcccccc----cccHHHHHHHHHHcCCcE----EEE--------ECC--CCCHHHHHHhhc--cCCEEEE--EeecC
Q 023494 141 IVSVHCEQSS----TIHLHRTLNQIKDLGAKA----GVV--------LNP--ATSLSAIECVLD--VVDLVLI--MSVNP 198 (281)
Q Consensus 141 ~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~----Gla--------i~p--~t~ie~~~~~l~--~vD~Ilv--msV~p 198 (281)
.|-+=.-..+ ...-.++.+.++.+|+-+ |-. -.. -|..+...++.. .+|.+.+ .++|-
T Consensus 111 SVMiD~S~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~~TgvD~LAvaiGt~HG 190 (321)
T PRK07084 111 SVMIDGSHLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVKKTGVDSLAISIGTSHG 190 (321)
T ss_pred EEEeeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHHHhCCCEEeeccccccc
Confidence 7776543322 122457778888888654 221 011 356777888876 4887654 34442
Q ss_pred CCCC-Cc-cchh-HHHHHHHHHHHhhhcCCCCeEEEec-----------------------CCChhcHHHHHHcCCcEEE
Q 023494 199 GFGG-QS-FIES-QVKKISDLRRMCLEKGVNPWIEVDG-----------------------GVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 199 G~~G-Q~-f~~~-~l~kI~~lr~l~~~~~~~~~I~VDG-----------------------GI~~e~i~~~~~aGAD~~V 252 (281)
-+.+ +. +.|. -+++|+++++.+. ++++..=| |+..|.++++++.|+.-|=
T Consensus 191 ~Y~~~~~~~~p~Ld~d~L~~I~~~~~----~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~kai~~GI~KIN 266 (321)
T PRK07084 191 AYKFKPGQCPPPLRFDILEEIEKRIP----GFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRKAAKSAVCKIN 266 (321)
T ss_pred cccCCCCCCCCccCHHHHHHHHHhcC----CCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHHHHHcCCceec
Confidence 2222 10 1222 3677777777652 36776655 5567899999999999999
Q ss_pred EcccccC
Q 023494 253 AGSAVFG 259 (281)
Q Consensus 253 vGSaIf~ 259 (281)
+++.+..
T Consensus 267 i~Tdl~~ 273 (321)
T PRK07084 267 IDSDGRL 273 (321)
T ss_pred cchHHHH
Confidence 9988753
|
|
| >PRK14566 triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.84 Score=42.04 Aligned_cols=136 Identities=18% Similarity=0.256 Sum_probs=81.2
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccC-----
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVV----- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~v----- 188 (281)
.+++.++|++++.+. .|- .+.+.+.+-++.+.++|+.+.+-+.-... . +.++..++..
T Consensus 88 ~~mL~d~G~~~viiGHSERR~~f~Etd~~v~~Kv~~al~~gl~pIvCvGEtleere~g~t~~vv~~Ql~~~l~~~~~~~~ 167 (260)
T PRK14566 88 GQMLKDAGCRYVIIGHSERRRMYGETSNIVAEKFAAAQKHGLTPILCVGESGPAREARRTFEVIAEELDIVIEKNGTMAF 167 (260)
T ss_pred HHHHHHcCCCEEEECcccccCCCCcCHHHHHHHHHHHHHCCCEEEEEcCCcHHHHhcCCHHHHHHHHHHHHHhccchhhc
Confidence 578899999999885 221 02445677888899999998887753211 1 1222333311
Q ss_pred CEEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEcccccC
Q 023494 189 DLVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG 259 (281)
Q Consensus 189 D~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaIf~ 259 (281)
+-| +..=+|-+ +|+.-.|+-.++ ...+|+.+.+. ..+++|.=.|.++++|+.++. ....|++-+|++=.+
T Consensus 168 ~~i-vIAYEPvWAIGTG~~At~e~a~~v~~~IR~~l~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~dIDG~LVGgASL~ 246 (260)
T PRK14566 168 DNA-IIAYEPLWAVGTGKSATPEQAQEVHAFIRKRLSEVSPFIGENIRILYGGSVTPSNAADLFAQPDVDGGLIGGASLN 246 (260)
T ss_pred CcE-EEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHhcCccccccceEEecCCCCHhHHHHHhcCCCCCeEEechHhcC
Confidence 111 22336643 244433443333 23445444321 124678889999999999874 456999999998776
Q ss_pred CCCHHHHH
Q 023494 260 AKDYAEAI 267 (281)
Q Consensus 260 a~dp~~~~ 267 (281)
+++..+.+
T Consensus 247 ~~~F~~Ii 254 (260)
T PRK14566 247 STEFLSLC 254 (260)
T ss_pred HHHHHHHH
Confidence 65544443
|
|
| >cd00739 DHPS DHPS subgroup of Pterin binding enzymes | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.5 Score=38.65 Aligned_cols=97 Identities=23% Similarity=0.216 Sum_probs=53.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC---------CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI---------GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~---------G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|+....+..+.+.+.|+|+| ||==...-|+... =..+++.|++..+.|+-+ =+.+|. .++.+.++|
T Consensus 22 ~~~~~~~~a~~~~~~GAdiI--DIG~~st~p~~~~i~~~~E~~rl~~~v~~i~~~~~~plSI--DT~~~~-v~e~al~~G 96 (257)
T cd00739 22 SLDKAVAHAEKMIAEGADII--DIGGESTRPGADPVSVEEELERVIPVLEALRGELDVLISV--DTFRAE-VARAALEAG 96 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEE--EECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCcEEE--eCCCHH-HHHHHHHhC
Confidence 44444455556667899986 5420000122110 112356666554555433 234444 567788899
Q ss_pred CCEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 139 Ad~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+++|- +-.+. .+ .+.++.++++|+.+.+.-.
T Consensus 97 ~~iINdisg~~---~~-~~~~~l~~~~~~~vV~m~~ 128 (257)
T cd00739 97 ADIINDVSGGS---DD-PAMLEVAAEYGAPLVLMHM 128 (257)
T ss_pred CCEEEeCCCCC---CC-hHHHHHHHHcCCCEEEECC
Confidence 99875 44442 12 5677888899987777433
|
DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. |
| >PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=94.38 E-value=3.8 Score=37.75 Aligned_cols=188 Identities=15% Similarity=0.173 Sum_probs=109.5
Q ss_pred CceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCccccc-c-cCCHHHHHHcCcC---CCCCeeEEEEecChhhH
Q 023494 57 DIIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-I-TIGPLVVDALRPV---TDLPLDVHLMIVEPEQR 130 (281)
Q Consensus 57 ~~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~-~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~ 130 (281)
.+.+...-.+. |.....+..+.+.+.|+.++-...-|-...|. + .+|.+.++.++++ .++++....+ ||. .
T Consensus 27 ~~~~iaGPCsie~~~~~~~~A~~lk~~g~~~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~--d~~-~ 103 (266)
T PRK13398 27 EKIIIAGPCAVESEEQMVKVAEKLKELGVHMLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVM--DTR-D 103 (266)
T ss_pred CEEEEEeCCcCCCHHHHHHHHHHHHHcCCCEEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeC--Chh-h
Confidence 44444444444 44455666677888899987776666443432 2 4566666666654 5667666443 333 4
Q ss_pred HHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc------CCEEEEEeecCCCCCCc
Q 023494 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~------vD~IlvmsV~pG~~GQ~ 204 (281)
++.+.+. +|++-+.... ..+ ..+++++-+.|+-+++.-...-.++++....+. -+.+++.+-.+.+.+.+
T Consensus 104 ~~~l~~~-vd~~kIga~~--~~n-~~LL~~~a~~gkPV~lk~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~rG~~t~~~Y~ 179 (266)
T PRK13398 104 VEEVADY-ADMLQIGSRN--MQN-FELLKEVGKTKKPILLKRGMSATLEEWLYAAEYIMSEGNENVVLCERGIRTFETYT 179 (266)
T ss_pred HHHHHHh-CCEEEECccc--ccC-HHHHHHHhcCCCcEEEeCCCCCCHHHHHHHHHHHHhcCCCeEEEEECCCCCCCCCC
Confidence 4555566 8999998774 232 457888888898888887766344433332221 35555433222222222
Q ss_pred cchhH--HHHHHHHHHHhhhcCCCCeEEEec--CCC-----hhcHHHHHHcCCcEEEEccccc
Q 023494 205 FIESQ--VKKISDLRRMCLEKGVNPWIEVDG--GVG-----PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 205 f~~~~--l~kI~~lr~l~~~~~~~~~I~VDG--GI~-----~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+.. +..|..+++. .+++|.+|- +++ +......+.+|||++++=+-+.
T Consensus 180 --~~~vdl~~i~~lk~~-----~~~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 235 (266)
T PRK13398 180 --RNTLDLAAVAVIKEL-----SHLPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHPE 235 (266)
T ss_pred --HHHHHHHHHHHHHhc-----cCCCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccCC
Confidence 233 3344444433 246788863 333 4456667899999999887765
|
|
| >cd08208 RLP_Photo Ribulose bisphosphate carboxylase like proteins from phototrophic bacteria | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.68 Score=45.50 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=54.8
Q ss_pred cccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCC
Q 023494 37 RRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116 (281)
Q Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~ 116 (281)
+.|++....|-.+.++=.......++-|-+ |...+.+..+.+.+.|++.+.+|++= .|...++.|++.++.
T Consensus 208 ~eRv~~~~~ai~~a~~eTG~~~~ya~NiT~-~~~em~~ra~~a~~~G~~~vmv~~~~--------~G~~al~~L~~~~~l 278 (424)
T cd08208 208 EERAALLGKARRRAEAETGVPKIYLANITD-EVDRLMELHDVAVRNGANALLINAMP--------VGLSAVRMLRKHAQV 278 (424)
T ss_pred HHHHHHHHHHHHHHHHhhCCcceEEEEccC-CHHHHHHHHHHHHHhCCCEEEEeeec--------ccHHHHHHHHhcCCC
Confidence 555666655554444433334566777774 88888888889999999998887443 467789999887778
Q ss_pred CeeEEE
Q 023494 117 PLDVHL 122 (281)
Q Consensus 117 ~idaHL 122 (281)
+|.+|=
T Consensus 279 ~ihaHr 284 (424)
T cd08208 279 PLIAHF 284 (424)
T ss_pred eEEecc
Confidence 888774
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. The specific function of this subgroup is unknown. |
| >cd02067 B12-binding B12 binding domain (B12-BD) | Back alignment and domain information |
|---|
Probab=94.34 E-value=0.73 Score=36.51 Aligned_cols=89 Identities=16% Similarity=0.184 Sum_probs=55.2
Q ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEE
Q 023494 155 HRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEV 231 (281)
Q Consensus 155 ~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~V 231 (281)
.-+...++..|.++ +.+.+.+|.+.+.+.+. .+|+|.+-+.. ++.+ +...+-++.+| +.+. ++.|.+
T Consensus 17 ~~~~~~l~~~G~~V-~~lg~~~~~~~l~~~~~~~~pdvV~iS~~~----~~~~-~~~~~~i~~l~----~~~~~~~~i~v 86 (119)
T cd02067 17 NIVARALRDAGFEV-IDLGVDVPPEEIVEAAKEEDADAIGLSGLL----TTHM-TLMKEVIEELK----EAGLDDIPVLV 86 (119)
T ss_pred HHHHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccc----cccH-HHHHHHHHHHH----HcCCCCCeEEE
Confidence 33455677889888 66667788877766554 37888763221 2211 23333333333 3344 677877
Q ss_pred ecCCChhcHHHHHHcCCcEEEE
Q 023494 232 DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 232 DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.|..-.+....+.+.|+|.++-
T Consensus 87 GG~~~~~~~~~~~~~G~D~~~~ 108 (119)
T cd02067 87 GGAIVTRDFKFLKEIGVDAYFG 108 (119)
T ss_pred ECCCCChhHHHHHHcCCeEEEC
Confidence 7777666567889999998763
|
This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. |
| >PRK03739 2-isopropylmalate synthase; Validated | Back alignment and domain information |
|---|
Probab=94.30 E-value=2.7 Score=42.80 Aligned_cols=198 Identities=22% Similarity=0.184 Sum_probs=110.1
Q ss_pred hhhhcccccc-CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH-HHHHHcCcCCCC-Cee
Q 023494 43 IVKASARVDK-FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP-LVVDALRPVTDL-PLD 119 (281)
Q Consensus 43 ~~~~~~~~~~-~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~-~~I~~ir~~t~~-~id 119 (281)
+-++..|+|- ++++.= +|.+ .+...+=-+..+.|.+.|+|.|++ | | |..+-+. ++++.|.+. +. +-+
T Consensus 27 ~~~~~~i~dttLRDGeQ--~~gv-~~s~~~Ki~ia~~L~~~GV~~IE~----G-f-P~~s~~e~e~v~~i~~~-~~~~~~ 96 (552)
T PRK03739 27 ITKAPIWCSVDLRDGNQ--ALIE-PMSPERKLRMFDLLVKIGFKEIEV----G-F-PSASQTDFDFVRELIEE-GLIPDD 96 (552)
T ss_pred cCCCCeEeeCCCCCcCc--CCCC-CCCHHHHHHHHHHHHHcCCCEEEE----E-C-CCcChHHHHHHHHHHHh-cCCCCC
Confidence 4557778777 666541 2222 122222223445677889988887 4 5 7666555 778887432 11 113
Q ss_pred EEEEe--cChhhHHHHHHHc--CCC--EEEEccccc----------c----cccHHHHHHHHHHcCCc-----EEEEECC
Q 023494 120 VHLMI--VEPEQRVPDFIKA--GAD--IVSVHCEQS----------S----TIHLHRTLNQIKDLGAK-----AGVVLNP 174 (281)
Q Consensus 120 aHLmv--~dp~~~i~~~~~a--GAd--~Itvh~Ea~----------~----~~~i~~~l~~ik~~G~k-----~Glai~p 174 (281)
+.+++ -+....++.+.++ |++ .|++-.-++ + .+.+.+.++.+|++|.. .++.+.+
T Consensus 97 ~~i~~l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~ 176 (552)
T PRK03739 97 VTIQVLTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSP 176 (552)
T ss_pred CEEEEEeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEec
Confidence 33343 3333457777665 444 455543221 0 11245666777777743 4566677
Q ss_pred C----CCHHHHHHhhcc--------CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChh
Q 023494 175 A----TSLSAIECVLDV--------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPK 238 (281)
Q Consensus 175 ~----t~ie~~~~~l~~--------vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e 238 (281)
. ++.+.+.+++.. +|...... -|..-|.....++.+.++.+++.++.. .+.+|++ |-|.-..
T Consensus 177 EDasR~d~~~l~~~~~~a~~~~~ag~~~~~~i~-l~DTvG~~~P~~~~~~v~~l~~~~~~~-~~~~i~vH~HND~GlAvA 254 (552)
T PRK03739 177 ESFTGTELDFALEVCDAVIDVWQPTPERKVILN-LPATVEMSTPNVYADQIEWMCRNLARR-DSVILSLHPHNDRGTGVA 254 (552)
T ss_pred ccCCCCCHHHHHHHHHHHHHhhcCCCCceeEEE-eccCCcCcCHHHHHHHHHHHHHhCCcc-cCceEEEEeCCCCChHHH
Confidence 7 777776666543 12111111 244445433344456677776654311 1346776 8899988
Q ss_pred cHHHHHHcCCcEEE
Q 023494 239 NAYKVIEAGANALV 252 (281)
Q Consensus 239 ~i~~~~~aGAD~~V 252 (281)
|.-..+++||+.+=
T Consensus 255 NslaAv~aGa~~v~ 268 (552)
T PRK03739 255 AAELALMAGADRVE 268 (552)
T ss_pred HHHHHHHhCCCEEE
Confidence 88888999999864
|
|
| >PRK11320 prpB 2-methylisocitrate lyase; Provisional | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.56 Score=43.91 Aligned_cols=182 Identities=16% Similarity=0.150 Sum_probs=102.4
Q ss_pred CCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE----------eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe
Q 023494 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD----------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI 124 (281)
Q Consensus 55 ~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD----------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv 124 (281)
.....+.|..+ +-.. -+.++++|.+.+.+= .=|+.+++ ++.-...++.|...+++|+.+|.=.
T Consensus 15 ~~~~l~~p~~~-----Da~S-Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~-~~e~~~~~~~I~~~~~iPviaD~d~ 87 (292)
T PRK11320 15 AEKPLQIVGTI-----NAYH-ALLAERAGFKAIYLSGGGVAAASLGLPDLGITT-LDDVLIDVRRITDACDLPLLVDIDT 87 (292)
T ss_pred CCCcEEecCCC-----CHHH-HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCC-HHHHHHHHHHHHhccCCCEEEECCC
Confidence 33456666654 2222 245556666665431 22432222 2333556677777778999998877
Q ss_pred c--Chhh---HHHHHHHcCCCEEEEcccc-------------cccccHHHHHHHHHHcCCcEEEEECCCCC---------
Q 023494 125 V--EPEQ---RVPDFIKAGADIVSVHCEQ-------------SSTIHLHRTLNQIKDLGAKAGVVLNPATS--------- 177 (281)
Q Consensus 125 ~--dp~~---~i~~~~~aGAd~Itvh~Ea-------------~~~~~i~~~l~~ik~~G~k~Glai~p~t~--------- 177 (281)
- +|.. .++.+.++|+-.|++-.-. .+.++..+-|+.+++.-....+.|+--|+
T Consensus 88 GyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~de 167 (292)
T PRK11320 88 GFGGAFNIARTVKSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDA 167 (292)
T ss_pred CCCCHHHHHHHHHHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHH
Confidence 3 6654 4888999999888773211 01222333444444432222233333332
Q ss_pred -HHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE---EEecCCCh-hcHHHHHHcCCcEE
Q 023494 178 -LSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI---EVDGGVGP-KNAYKVIEAGANAL 251 (281)
Q Consensus 178 -ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I---~VDGGI~~-e~i~~~~~aGAD~~ 251 (281)
+++.+.|.+ .+|.|.+ ||. ..++.++++.+.++ .++ .+.||-++ -+..++.+.|++.+
T Consensus 168 AI~Ra~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~~n~~~~~~~p~~s~~~L~~lGv~~v 231 (292)
T PRK11320 168 AIERAQAYVEAGADMIFP----EAM-------TELEMYRRFADAVK-----VPILANITEFGATPLFTTEELASAGVAMV 231 (292)
T ss_pred HHHHHHHHHHcCCCEEEe----cCC-------CCHHHHHHHHHhcC-----CCEEEEeccCCCCCCCCHHHHHHcCCcEE
Confidence 355556666 4899876 332 23555555555442 233 23466553 47889999999999
Q ss_pred EEcccccC
Q 023494 252 VAGSAVFG 259 (281)
Q Consensus 252 VvGSaIf~ 259 (281)
+.|...+.
T Consensus 232 ~~~~~~~~ 239 (292)
T PRK11320 232 LYPLSAFR 239 (292)
T ss_pred EEChHHHH
Confidence 99987664
|
|
| >COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=94.24 E-value=1.6 Score=42.79 Aligned_cols=166 Identities=19% Similarity=0.203 Sum_probs=100.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEE--EecChhhHHHHHHHcCCCEEEEccccc--
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHL--MIVEPEQRVPDFIKAGADIVSVHCEQS-- 149 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHL--mv~dp~~~i~~~~~aGAd~Itvh~Ea~-- 149 (281)
+..+.|.+.|+|+|++ |.++ .-.-.++.++.+....+....+-. ...+-.+-++.+.++|++.|++-..+.
T Consensus 28 ~Ia~~Ld~lGv~~IE~----g~p~-~s~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~ea~~~a~~~~i~if~~tSd~ 102 (409)
T COG0119 28 RIAKALDDLGVDYIEA----GFPV-ASPGDFEFVRAIAEKAGLFICALIAALARAIKRDIEALLEAGVDRIHIFIATSDL 102 (409)
T ss_pred HHHHHHHHcCCCEEEE----eCCc-CChhhHHHHHHHHHhcCcccchhhhhhHHhHHhhHHHHHhCCCCEEEEEEcCCHH
Confidence 4556778899999887 4322 123345666666531111111111 111112346778899999988765442
Q ss_pred ------------ccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHH
Q 023494 150 ------------STIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 150 ------------~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
..+-+.+.+++++++|+++-.. -...|+.+.+.++.+. ++.|.+ |-.-|-.-...+.
T Consensus 103 h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~~~Ed~~rt~~~~l~~~~~~~~~~ga~~i~l----~DTvG~~~P~~~~ 178 (409)
T COG0119 103 HLRYKLKKTREEVLERAVDAVEYARDHGLEVRFSAEDATRTDPEFLAEVVKAAIEAGADRINL----PDTVGVATPNEVA 178 (409)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccCCHHHHHHHHHHHHHcCCcEEEE----CCCcCccCHHHHH
Confidence 0112557788899999887743 2335677666665443 455543 3333433334556
Q ss_pred HHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 211 KKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
+.++.+++.++. ..++++ |-|.-..|.-..+++||+.+
T Consensus 179 ~~i~~l~~~v~~---~~~l~~H~HnD~G~AvANslaAv~aGa~~v 220 (409)
T COG0119 179 DIIEALKANVPN---KVILSVHCHNDLGMAVANSLAAVEAGADQV 220 (409)
T ss_pred HHHHHHHHhCCC---CCeEEEEecCCcchHHHHHHHHHHcCCcEE
Confidence 778888877652 256666 88888888889999999966
|
|
| >TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.19 Score=50.11 Aligned_cols=131 Identities=8% Similarity=0.024 Sum_probs=79.2
Q ss_pred CccCHHHHHHHHH-HcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecCh---hhHHHHHHHcCCCE
Q 023494 68 NFAKLGEQVKAVE-LAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEP---EQRVPDFIKAGADI 141 (281)
Q Consensus 68 D~~~l~~~l~~l~-~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp---~~~i~~~~~aGAd~ 141 (281)
++.++.++++.+. +.|+..+ .+.|.+|..+-..-.++.+.|.+. .++.+.+..-+.+. .+.++.+.++|...
T Consensus 223 s~e~Vv~Ei~~l~~~~gv~~~--~~~Dd~f~~~~~~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~aG~~~ 300 (497)
T TIGR02026 223 DPKKFVDEIEWLVRTHGVGFF--ILADEEPTINRKKFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRRAGLVH 300 (497)
T ss_pred CHHHHHHHHHHHHHHcCCCEE--EEEecccccCHHHHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHHhCCcE
Confidence 4456677787775 4678765 557877665543334556666442 12333332222221 34778889999999
Q ss_pred EEEccccccc------------ccHHHHHHHHHHcCCcEEEE--EC-CCCCHHHHHHhhc-----cCCEEEE--EeecCC
Q 023494 142 VSVHCEQSST------------IHLHRTLNQIKDLGAKAGVV--LN-PATSLSAIECVLD-----VVDLVLI--MSVNPG 199 (281)
Q Consensus 142 Itvh~Ea~~~------------~~i~~~l~~ik~~G~k~Gla--i~-p~t~ie~~~~~l~-----~vD~Ilv--msV~pG 199 (281)
|.+..|+.+. ++..+.++.++++|+.+.+. +. |+...+.+++-++ .+|.+.+ ++..||
T Consensus 301 v~iGiES~~~~~L~~~~K~~t~~~~~~ai~~l~~~Gi~~~~~~I~G~P~et~e~~~~t~~~~~~l~~~~~~~~~~tP~PG 380 (497)
T TIGR02026 301 ISLGTEAAAQATLDHFRKGTTTSTNKEAIRLLRQHNILSEAQFITGFENETDETFEETYRQLLDWDPDQANWLMYTPWPF 380 (497)
T ss_pred EEEccccCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCcEEEEEEEECCCCCHHHHHHHHHHHHHcCCCceEEEEecCCCC
Confidence 9999997521 23567888899999977543 33 5655555554433 2576554 444666
Q ss_pred C
Q 023494 200 F 200 (281)
Q Consensus 200 ~ 200 (281)
.
T Consensus 381 T 381 (497)
T TIGR02026 381 T 381 (497)
T ss_pred c
Confidence 4
|
This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase. |
| >cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.82 Score=41.44 Aligned_cols=166 Identities=14% Similarity=0.186 Sum_probs=89.9
Q ss_pred HHHHHHcCCCeEEEE---------eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--cChh---hHHHHHHHcCCCE
Q 023494 76 VKAVELAGCDWIHVD---------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPE---QRVPDFIKAGADI 141 (281)
Q Consensus 76 l~~l~~~G~d~iHiD---------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~dp~---~~i~~~~~aGAd~ 141 (281)
-+.+++.|.+.+-+- .-|+..++ +..=...++.|.+.++.|+.+|+-. -++. +.++.+.++|++.
T Consensus 22 A~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~-~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g 100 (243)
T cd00377 22 ARLAERAGFKAIYTSGAGVAASLGLPDGGLLT-LDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAG 100 (243)
T ss_pred HHHHHHcCCCEEEeccHHHHHhcCCCCCCcCC-HHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence 345666788887663 12222111 1222344555555567899998877 2433 3477888999999
Q ss_pred EEE--------cc-----cccccccHHHHHHHHHHc--C-CcEEEEEC-----CC-----CCHHHHHHhhcc-CCEEEEE
Q 023494 142 VSV--------HC-----EQSSTIHLHRTLNQIKDL--G-AKAGVVLN-----PA-----TSLSAIECVLDV-VDLVLIM 194 (281)
Q Consensus 142 Itv--------h~-----Ea~~~~~i~~~l~~ik~~--G-~k~Glai~-----p~-----t~ie~~~~~l~~-vD~Ilvm 194 (281)
|.+ .. ...+.++..+-++.+++. + -.+-|.-. .. .-+++.+.|.+. +|.|.+.
T Consensus 101 v~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~~AGAD~v~v~ 180 (243)
T cd00377 101 IHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYAEAGADGIFVE 180 (243)
T ss_pred EEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence 999 11 111233344444444442 2 13333222 11 133555556654 8999874
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE---ecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV---DGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V---DGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.. ..+.++++.+.. +.++.+ .|+ +.-+..++.+.|++.++.|...+.
T Consensus 181 ~~~-----------~~~~~~~~~~~~-----~~Pl~~~~~~~~-~~~~~~~l~~lG~~~v~~~~~~~~ 231 (243)
T cd00377 181 GLK-----------DPEEIRAFAEAP-----DVPLNVNMTPGG-NLLTVAELAELGVRRVSYGLALLR 231 (243)
T ss_pred CCC-----------CHHHHHHHHhcC-----CCCEEEEecCCC-CCCCHHHHHHCCCeEEEEChHHHH
Confidence 221 223444444332 234333 333 124677778889999999987764
|
Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to |
| >cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain | Back alignment and domain information |
|---|
Probab=94.12 E-value=2 Score=34.50 Aligned_cols=98 Identities=15% Similarity=0.202 Sum_probs=60.9
Q ss_pred HHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEecCC
Q 023494 159 NQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV 235 (281)
Q Consensus 159 ~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDGGI 235 (281)
..++..|.++ +.+.+.+|.+.+.+.+. .+|+|.+-+.. +...+.++++.+.+.+.+. ++.+.+.|..
T Consensus 21 ~~l~~~G~~v-i~lG~~vp~e~~~~~a~~~~~d~V~iS~~~---------~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~ 90 (122)
T cd02071 21 RALRDAGFEV-IYTGLRQTPEEIVEAAIQEDVDVIGLSSLS---------GGHMTLFPEVIELLRELGAGDILVVGGGII 90 (122)
T ss_pred HHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEcccc---------hhhHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 3456666554 45566678877666544 48888763222 2334445555555544444 5677777777
Q ss_pred ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 236 ~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
..+...++.++|.|.++-+ ..++++.+..|+
T Consensus 91 ~~~~~~~~~~~G~d~~~~~-----~~~~~~~~~~~~ 121 (122)
T cd02071 91 PPEDYELLKEMGVAEIFGP-----GTSIEEIIDKIR 121 (122)
T ss_pred CHHHHHHHHHCCCCEEECC-----CCCHHHHHHHHh
Confidence 7888999999999988755 345555555544
|
This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation. |
| >KOG0538 consensus Glycolate oxidase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=94.11 E-value=1.8 Score=40.91 Aligned_cols=112 Identities=14% Similarity=0.246 Sum_probs=71.8
Q ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 156 RTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 156 ~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
+.++++|+.-.-+.+.=.--| .|+.+.-. -.++-|+| + +-|-..+.+.|.+++-+.++.+.... .+++..|||
T Consensus 213 ~Di~wLr~~T~LPIvvKGilt-~eDA~~Ave~G~~GIIV-S-NHGgRQlD~vpAtI~~L~Evv~aV~~---ri~V~lDGG 286 (363)
T KOG0538|consen 213 KDIKWLRSITKLPIVVKGVLT-GEDARKAVEAGVAGIIV-S-NHGGRQLDYVPATIEALPEVVKAVEG---RIPVFLDGG 286 (363)
T ss_pred hhhHHHHhcCcCCeEEEeecc-cHHHHHHHHhCCceEEE-e-CCCccccCcccchHHHHHHHHHHhcC---ceEEEEecC
Confidence 456677765433333211111 12222222 24777765 3 44656777889999988888877754 478889999
Q ss_pred CChh-cHHHHHHcCCcEEEEcccc-cC-----CCCHHHHHHHHHHh
Q 023494 235 VGPK-NAYKVIEAGANALVAGSAV-FG-----AKDYAEAIKGIKTS 273 (281)
Q Consensus 235 I~~e-~i~~~~~aGAD~~VvGSaI-f~-----a~dp~~~~~~l~~~ 273 (281)
|... .+-+.+..||..+-+|+-+ |+ ..-.++.++-|++.
T Consensus 287 VR~G~DVlKALALGAk~VfiGRP~v~gLA~~Ge~GV~~vl~iL~~e 332 (363)
T KOG0538|consen 287 VRRGTDVLKALALGAKGVFIGRPIVWGLAAKGEAGVKKVLDILRDE 332 (363)
T ss_pred cccchHHHHHHhcccceEEecCchheeeccccchhHHHHHHHHHHH
Confidence 9954 5667799999999999875 43 23455666666653
|
|
| >TIGR00044 pyridoxal phosphate enzyme, YggS family | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.6 Score=37.68 Aligned_cols=171 Identities=15% Similarity=0.084 Sum_probs=91.7
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
.+.+..+.+.|++++ | +..+..+..-.+.+|+.. ..-.|++-.-..+...... .-++++..-.. .+
T Consensus 40 ~~~i~~l~~~G~~~f------g--~~~~~Ea~~k~~~lr~~~--~~~~~~ig~~q~~~~~~~~-~~~~l~~~vds---~~ 105 (229)
T TIGR00044 40 ASAIQIAYDAGQRAF------G--ENYVQELVEKIKLLEDLG--KLEWHFIGPLQSNKDRLVV-ENFDWVHTIDS---LK 105 (229)
T ss_pred HHHHHHHHHcCCccc------c--EEcHHHHHHHHHHhcccC--CceEEEECCCcchHHHHHh-hhcCEEEEECC---HH
Confidence 667777888898864 2 122333334444555432 2344444422122222122 12455332222 34
Q ss_pred cHHHHHHHHHHcCCcEEE--EECCC-------CCHHHHHHhh------ccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 153 HLHRTLNQIKDLGAKAGV--VLNPA-------TSLSAIECVL------DVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Gl--ai~p~-------t~ie~~~~~l------~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
.+..+-+.+++.|..+.+ -++.+ ...+.+.+++ +.+.+..+|+-.+-.....-....++.+++++
T Consensus 106 ~~~~l~~~a~~~~~~~~V~l~vdtg~gm~R~G~~~~e~~~~~~~i~~~~~l~l~Gl~th~~~~~~~~~~~~~~~~~~~~~ 185 (229)
T TIGR00044 106 IAKKLNEQREKLQPPLNVLLQINISDEESKSGIQPEELLELAIQIEELKHLKLRGLMTIGAPTDSHEDQEENFRFMKLLF 185 (229)
T ss_pred HHHHHHHHHHhcCCCceEEEEEECCCCCCCCCCCHHHHHHHHHHHhcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence 455666666677765544 44441 0112222332 23567777776543332222335667777777
Q ss_pred HHhhhcCC--CCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 218 RMCLEKGV--NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 218 ~l~~~~~~--~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.+...+. ++ -.+..|-+.+ .....+.|++.+=+|++||.
T Consensus 186 ~~l~~~~~~~~~-~~lS~G~t~~-~~~a~~~g~tevR~G~~if~ 227 (229)
T TIGR00044 186 WQIKQDSPFGTI-DTLSMGMSDD-FEEAIAAGATMVRIGTAIFG 227 (229)
T ss_pred HHHHhhcCCCCC-CEEeeeCcHh-HHHHHHCCCCEEECChHHcC
Confidence 77766543 23 3578888875 44457799999999999996
|
Members of this protein family include YggS from Escherichia coli and YBL036C, an uncharacterized pyridoxal protein of Saccharomyces cerevisiae. |
| >cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II | Back alignment and domain information |
|---|
Probab=94.10 E-value=2.7 Score=40.18 Aligned_cols=195 Identities=11% Similarity=0.112 Sum_probs=114.6
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC-c--cccc--------------ccCCHHHHHHcCcCCCCCeeEEEE
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG-R--FVPN--------------ITIGPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG-~--fvpn--------------~~~G~~~I~~ir~~t~~~idaHLm 123 (281)
.|.+-+.++..+...++.+++.+...| +-+-.+ . |.+. ...-...++.+.+..+.|+-+||=
T Consensus 15 V~AfN~~n~e~~~Avi~aAee~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~VPV~lHLD 93 (340)
T cd00453 15 LPAVNCVGTDSINAVLETAAKVKAPVI-VQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTD 93 (340)
T ss_pred EEEEEeCCHHHHHHHHHHHHHhCCCEE-EEcCcchHHHhCCCcccccccchhhhhhHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 355555565566667788888777765 444442 1 1110 111222344444445789999986
Q ss_pred ecC--hhhHHHHHHHcC-----------CCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------EC-
Q 023494 124 IVE--PEQRVPDFIKAG-----------ADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LN- 173 (281)
Q Consensus 124 v~d--p~~~i~~~~~aG-----------Ad~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~- 173 (281)
=.. ...++..++++| .+.|-+=.-..+. ..-.++++.++..|+-+ |-. ..
T Consensus 94 H~~~~~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~~~~~~ 173 (340)
T cd00453 94 HCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLSEESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGVDNSH 173 (340)
T ss_pred CCCCCCHHHHHHHHHcCCccccccCCCCceeEEecCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCCccccc
Confidence 554 446899999999 5555544322111 12446777788888654 221 00
Q ss_pred -----CCCCHHHHHHhhc--c----CCEEEE--EeecCCCC-CCccchhHHHHHHHHHHHhhh-cCC---CCeEEEecCC
Q 023494 174 -----PATSLSAIECVLD--V----VDLVLI--MSVNPGFG-GQSFIESQVKKISDLRRMCLE-KGV---NPWIEVDGGV 235 (281)
Q Consensus 174 -----p~t~ie~~~~~l~--~----vD~Ilv--msV~pG~~-GQ~f~~~~l~kI~~lr~l~~~-~~~---~~~I~VDGGI 235 (281)
.-|..|...++.+ . +|.+.+ .++|--+. |.+ .-.+++|+++++.+.. +|+ ++++..=||=
T Consensus 174 ~~~~~~yT~Peea~~Fv~~Tg~i~pvD~LAvsiGt~HG~Yk~g~p--~L~~~~L~~i~~~~~~~~gl~~~~~pLVlHGgS 251 (340)
T cd00453 174 MDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKKGNV--VLTPTILRDSQEYVSKKHNLPHNSLNFVFHGGS 251 (340)
T ss_pred ccccccCCCHHHHHHHHHHhCCCCcceEEeeecCccccCCCCCCC--ccCHHHHHHHHHHHHhhcccCCCCCceEEeCCC
Confidence 1355777777775 3 676543 44552222 221 1225667777776632 222 5678787764
Q ss_pred --ChhcHHHHHHcCCcEEEEccccc
Q 023494 236 --GPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 236 --~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
..+.++.+++.|+.-+=+++.+.
T Consensus 252 G~~~e~~~~ai~~Gi~KiNi~Te~~ 276 (340)
T cd00453 252 GSTAQEIKDSVSYGVVKMNIDTDTQ 276 (340)
T ss_pred CCCHHHHHHHHHcCCeEEEcccHHH
Confidence 47899999999999999998864
|
This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin. |
| >TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.32 Score=45.54 Aligned_cols=198 Identities=14% Similarity=0.172 Sum_probs=108.3
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE----------eeeCcccccccCCHHHHHHcCcCCCCCeeEEE
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD----------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD----------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHL 122 (281)
+......+.|..+- -.. -+.++++|.+.+..- .-|+.+++ ++.-...+++|...+++|+.+|.
T Consensus 12 ~~~~~~l~~p~v~D-----a~S-Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~-~~e~~~~~~~I~~~~~lPv~aD~ 84 (294)
T TIGR02319 12 MNAPEILVVPSAYD-----ALS-AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTS-VSEQAINAKNIVLAVDVPVIMDA 84 (294)
T ss_pred hcCCCcEEeecCcC-----HHH-HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCC-HHHHHHHHHHHHhccCCCEEEEC
Confidence 34445666666652 222 245566777776542 23433332 22334556667777889999998
Q ss_pred Eec--Chh---hHHHHHHHcCCCEEEEccccc-------------ccccHHHHHHHHHHcCCcEEEEECCCC--------
Q 023494 123 MIV--EPE---QRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVVLNPAT-------- 176 (281)
Q Consensus 123 mv~--dp~---~~i~~~~~aGAd~Itvh~Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t-------- 176 (281)
=.- ++. +.++.+.++|+-.|++---.. +.++..+-|+.+++.--..-+.|+-.|
T Consensus 85 dtGyG~~~~v~r~V~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~ 164 (294)
T TIGR02319 85 DAGYGNAMSVWRATREFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGL 164 (294)
T ss_pred CCCCCCcHHHHHHHHHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCH
Confidence 772 332 458899999998888743210 112223334444443222223333222
Q ss_pred --CHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE-EEecCCCh-hcHHHHHHcCCcEE
Q 023494 177 --SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI-EVDGGVGP-KNAYKVIEAGANAL 251 (281)
Q Consensus 177 --~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I-~VDGGI~~-e~i~~~~~aGAD~~ 251 (281)
-+++.+.|.+ .+|.|.+ ||. .+.+.++++.+.++. .+.. .+.||-++ -++.++.+.|++.+
T Consensus 165 deaI~Ra~aY~eAGAD~ifi----~~~-------~~~~ei~~~~~~~~~---P~~~nv~~~~~~p~~s~~eL~~lG~~~v 230 (294)
T TIGR02319 165 DEAIRRSREYVAAGADCIFL----EAM-------LDVEEMKRVRDEIDA---PLLANMVEGGKTPWLTTKELESIGYNLA 230 (294)
T ss_pred HHHHHHHHHHHHhCCCEEEe----cCC-------CCHHHHHHHHHhcCC---CeeEEEEecCCCCCCCHHHHHHcCCcEE
Confidence 2345555554 3898875 332 234455555555431 1211 34455543 58999999999999
Q ss_pred EEcccccCC--CCHHHHHHHHH
Q 023494 252 VAGSAVFGA--KDYAEAIKGIK 271 (281)
Q Consensus 252 VvGSaIf~a--~dp~~~~~~l~ 271 (281)
+.|...+.+ ....+.+..|+
T Consensus 231 ~~~~~~~~aa~~a~~~~~~~l~ 252 (294)
T TIGR02319 231 IYPLSGWMAAASVLRKLFTELR 252 (294)
T ss_pred EEcHHHHHHHHHHHHHHHHHHH
Confidence 999887653 22334444444
|
This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization. |
| >PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.39 Score=38.60 Aligned_cols=90 Identities=22% Similarity=0.317 Sum_probs=66.3
Q ss_pred EEEECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC
Q 023494 169 GVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG 247 (281)
Q Consensus 169 Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG 247 (281)
||.+.++++++.+...+..++.|.+ ..|.|. |..| ..-+.||+ ..|+.-.|=+-|.+-.+.+..+..+|
T Consensus 1 gv~l~~d~~~~~l~~~L~~l~lI~i--~FP~F~DGRgf-----S~ArlLR~---r~gy~GelRA~Gdvl~DQl~~l~R~G 70 (110)
T PF06073_consen 1 GVWLAPDDDPEELADDLDRLPLIAI--DFPKFTDGRGF-----SQARLLRE---RYGYTGELRAVGDVLRDQLFYLRRCG 70 (110)
T ss_pred CeecCCCCCHHHHHhhccCCCEEEE--ECCCcCCchHh-----HHHHHHHH---HcCCCCcEEEeccchHHHHHHHHHcC
Confidence 6789999999999998888888865 378884 6554 22233343 34666789999999999999999999
Q ss_pred CcEEEEcccccCCCCHHHHHHHHHH
Q 023494 248 ANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 248 AD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.|.+.+-. ..+++...+.+..
T Consensus 71 Fdsf~l~~----~~~~~~~~~~l~~ 91 (110)
T PF06073_consen 71 FDSFELRE----DQDPEDALAALSD 91 (110)
T ss_pred CCEEEeCC----CCCHHHHHHHHhh
Confidence 99987642 3456655555544
|
|
| >PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.27 Score=44.01 Aligned_cols=169 Identities=18% Similarity=0.187 Sum_probs=95.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-------h-------HHHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-------Q-------RVPDFIK 136 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-------~-------~i~~~~~ 136 (281)
++++.++++.+.|++-+-++ -.|+ ...-+.+.. .+..+-+.+.=|. + -++.+.+
T Consensus 20 ~~~~~~~~a~~~~~~av~v~---p~~~------~~~~~~~~~---~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~ 87 (236)
T PF01791_consen 20 DIKKLCREAIEYGFDAVCVT---PGYV------KPAAELLAG---SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIR 87 (236)
T ss_dssp HHHHHHHHHHHHTSSEEEEE---GGGH------HHHHHHSTT---STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHH
T ss_pred hHHHHHHHHHHhCCCEEEEC---HHHH------HHHHHHhhc---cccccceEEEeCCCCCccccccccchHHHHHHHHH
Confidence 45667777788888887553 2222 223333322 2224444554331 2 2567889
Q ss_pred cCCCEEEEcccc---c------ccccHHHHHHHHHHcCCcEEEEECCCCCHH--------HHHHhh---c--cCCEEEEE
Q 023494 137 AGADIVSVHCEQ---S------STIHLHRTLNQIKDLGAKAGVVLNPATSLS--------AIECVL---D--VVDLVLIM 194 (281)
Q Consensus 137 aGAd~Itvh~Ea---~------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie--------~~~~~l---~--~vD~Ilvm 194 (281)
.|||-|-+...- . ..+++.++.+.++++|+++-+...+. +.+ .+.... . .+|+|=.
T Consensus 88 ~GAd~vd~vi~~~~~~~~~~~~~~~~i~~v~~~~~~~gl~vIlE~~l~-~~~~~~~~~~~~I~~a~ria~e~GaD~vKt- 165 (236)
T PF01791_consen 88 LGADEVDVVINYGALGSGNEDEVIEEIAAVVEECHKYGLKVILEPYLR-GEEVADEKKPDLIARAARIAAELGADFVKT- 165 (236)
T ss_dssp TT-SEEEEEEEHHHHHTTHHHHHHHHHHHHHHHHHTSEEEEEEEECEC-HHHBSSTTHHHHHHHHHHHHHHTT-SEEEE-
T ss_pred cCCceeeeeccccccccccHHHHHHHHHHHHHHHhcCCcEEEEEEecC-chhhcccccHHHHHHHHHHHHHhCCCEEEe-
Confidence 999988776432 0 12357777888888898887763332 222 122221 1 2788843
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcC--CCCeEEEecCCC-------hhcHHHHHHcCC--cEEEEcccccC
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKG--VNPWIEVDGGVG-------PKNAYKVIEAGA--NALVAGSAVFG 259 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~--~~~~I~VDGGI~-------~e~i~~~~~aGA--D~~VvGSaIf~ 259 (281)
..|++ ...+.+.++.+++...... -++.|-+.||++ .+.+.+++++|| -.+..|+.||+
T Consensus 166 -~tg~~-----~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~~Gr~i~q 235 (236)
T PF01791_consen 166 -STGKP-----VGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTSSGRNIWQ 235 (236)
T ss_dssp -E-SSS-----SCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEEEHHHHHT
T ss_pred -cCCcc-----ccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHHHHHHHHc
Confidence 23322 3344555666666665321 123489999993 445556679999 88999999886
|
|
| >PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal) | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.84 Score=41.48 Aligned_cols=127 Identities=17% Similarity=0.320 Sum_probs=68.9
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC---
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--- 199 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG--- 199 (281)
||......+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-.+|..+. +.-.++ .+|.+.+..-.+.
T Consensus 23 dpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~e~--~~ia~~~kP~~vtLVPE~r~e~T 99 (239)
T PF03740_consen 23 DPVEAARIAEEAGADGITVHLRE-DRRHIQDRDVRRLRELVKTPLNLEMAPTEEM--VDIALKVKPDQVTLVPEKREELT 99 (239)
T ss_dssp -HHHHHHHHHHTT-SEEEEEB-T-T-SSS-HHHHHHHHHH-SSEEEEEEESSHHH--HHHHHHH--SEEEEE--SGGGBS
T ss_pred CHHHHHHHHHHcCCCEEEeccCC-CcCcCCHHHHHHHHHHcccCEEeccCCCHHH--HHHHHhCCcCEEEECCCCCCCcC
Confidence 55666777889999999999764 223322 334444432 44566666654222 222222 4799988654332
Q ss_pred C-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 200 F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 200 ~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
. +|-.+.. -.++|+.+.+.+.+.|..+-+=+|.. ++.++...+.|||.+=+=+.=|
T Consensus 100 TegGldv~~-~~~~l~~~i~~L~~~gIrvSLFiDP~--~~qi~~A~~~Gad~VELhTG~y 156 (239)
T PF03740_consen 100 TEGGLDVAG-NRDRLKPVIKRLKDAGIRVSLFIDPD--PEQIEAAKELGADRVELHTGPY 156 (239)
T ss_dssp TTSSB-TCG-GHHHHHHHHHHHHHTT-EEEEEE-S---HHHHHHHHHTT-SEEEEETHHH
T ss_pred CCcCChhhc-CHHHHHHHHHHHHhCCCEEEEEeCCC--HHHHHHHHHcCCCEEEEehhHh
Confidence 1 3433332 35677777777766654444556765 6789999999999987765544
|
Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D .... |
| >PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside [] | Back alignment and domain information |
|---|
Probab=94.02 E-value=1.3 Score=42.08 Aligned_cols=129 Identities=21% Similarity=0.305 Sum_probs=74.4
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-C--CcEEEEECCCCCH------HH
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-G--AKAGVVLNPATSL------SA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G--~k~Glai~p~t~i------e~ 180 (281)
+.+||.|+|-+|+... + .+ -+.++++.+|+. | ..+|+=+++.... ++
T Consensus 158 A~~AGfDGVEIH~ahGyLl~qFLSp~~N~RtDeYGGs~ENR~Rf~~Eii~aIr~~vg~d~~v~~Rls~~~~~~~g~~~~e 237 (341)
T PF00724_consen 158 AKEAGFDGVEIHAAHGYLLSQFLSPLTNRRTDEYGGSLENRARFLLEIIEAIREAVGPDFPVGVRLSPDDFVEGGITLEE 237 (341)
T ss_dssp HHHTT-SEEEEEESTTSHHHHHHSTTT---SSTTSSSHHHHHHHHHHHHHHHHHHHTGGGEEEEEEETTCSSTTSHHSHH
T ss_pred HHHhccCeEeecccchhhhhheeeeccCCCchhhhhhhchhhHHHHHHHHHHHHHhcCCceEEEEEeeecccCCCCchHH
Confidence 4679999999996431 0 00 166888888875 4 3478878876542 22
Q ss_pred H---HHhhcc--CCEEEE------EeecCCCC-CCccch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc
Q 023494 181 I---ECVLDV--VDLVLI------MSVNPGFG-GQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 246 (281)
Q Consensus 181 ~---~~~l~~--vD~Ilv------msV~pG~~-GQ~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a 246 (281)
. .++++. +|++.+ ....|... ...+.+ ..++-.+.+|+.. +.++.+.||++ ++.+.++++.
T Consensus 238 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ik~~~-----~~pvi~~G~i~~~~~ae~~l~~ 312 (341)
T PF00724_consen 238 TIEIAKLLEELGVDFLDVSHGSYVHWSEPRPSPPFDFEPGYNLDLAEAIKKAV-----KIPVIGVGGIRTPEQAEKALEE 312 (341)
T ss_dssp HHHHHHHHHHHHHTTEEEEEESEEEEEBTSSTTTTTTTTTTTHHHHHHHHHHH-----SSEEEEESSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhhhccccccccccccccccccccccccchhhhhhhhhhhhc-----CceEEEEeeecchhhhHHHHhc
Confidence 2 222222 455432 12223221 111111 2233445555554 35788899999 5557777776
Q ss_pred C-CcEEEEcccccCCCCHHHHH
Q 023494 247 G-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 247 G-AD~~VvGSaIf~a~dp~~~~ 267 (281)
| +|.+.+|+++...+|.-..+
T Consensus 313 g~~DlV~~gR~~ladPd~~~k~ 334 (341)
T PF00724_consen 313 GKADLVAMGRPLLADPDLPNKA 334 (341)
T ss_dssp TSTSEEEESHHHHH-TTHHHHH
T ss_pred CCceEeeccHHHHhCchHHHHH
Confidence 6 99999999998777765444
|
It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A .... |
| >TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.16 Score=50.23 Aligned_cols=129 Identities=16% Similarity=0.178 Sum_probs=76.6
Q ss_pred CccCHHHHHHHHHHc--CCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe-cChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-~dp~~~i~~~~~aGAd~Itv 144 (281)
.+.++.++++.+.+. |++.+. +.|..|..+...-.++.+.|++. ++.+.+..-. .+ .+.++.+.++|+..+.+
T Consensus 228 s~e~V~~Ei~~~~~~~~~~~~i~--f~Dd~f~~~~~~~~~l~~~l~~~-~i~~~~~~~~~~~-~e~l~~l~~aG~~~v~i 303 (472)
T TIGR03471 228 SAESVIEEVKYALENFPEVREFF--FDDDTFTDDKPRAEEIARKLGPL-GVTWSCNARANVD-YETLKVMKENGLRLLLV 303 (472)
T ss_pred CHHHHHHHHHHHHHhcCCCcEEE--EeCCCCCCCHHHHHHHHHHHhhc-CceEEEEecCCCC-HHHHHHHHHcCCCEEEE
Confidence 334666777777654 677654 46777665433333455555553 3334333221 23 34788899999999999
Q ss_pred ccccccc------------ccHHHHHHHHHHcCCcEEEE--EC-CCCCHHHHHHhhcc-----CCEEEE--EeecCCC
Q 023494 145 HCEQSST------------IHLHRTLNQIKDLGAKAGVV--LN-PATSLSAIECVLDV-----VDLVLI--MSVNPGF 200 (281)
Q Consensus 145 h~Ea~~~------------~~i~~~l~~ik~~G~k~Gla--i~-p~t~ie~~~~~l~~-----vD~Ilv--msV~pG~ 200 (281)
..|+.+. ++..+.++.++++|+.+... +. |+...+.+.+.++. +|.+.+ ++..||.
T Consensus 304 GiES~s~~~L~~~~K~~~~~~~~~~i~~~~~~Gi~v~~~~IiGlPget~e~~~~ti~~~~~l~~~~~~~~~l~P~PGT 381 (472)
T TIGR03471 304 GYESGDQQILKNIKKGLTVEIARRFTRDCHKLGIKVHGTFILGLPGETRETIRKTIDFAKELNPHTIQVSLAAPYPGT 381 (472)
T ss_pred cCCCCCHHHHHHhcCCCCHHHHHHHHHHHHHCCCeEEEEEEEeCCCCCHHHHHHHHHHHHhcCCCceeeeecccCCCc
Confidence 9997521 23557788888999988643 33 56666555554332 455543 3345553
|
One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift. |
| >TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.48 Score=44.18 Aligned_cols=146 Identities=15% Similarity=0.113 Sum_probs=78.2
Q ss_pred HHHHHcCcCCCCCeeEEEEe-cChhh---HHHHHHHcCCCEEEEcc----------------cccccccHHHHHHHHHHc
Q 023494 105 LVVDALRPVTDLPLDVHLMI-VEPEQ---RVPDFIKAGADIVSVHC----------------EQSSTIHLHRTLNQIKDL 164 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv-~dp~~---~i~~~~~aGAd~Itvh~----------------Ea~~~~~i~~~l~~ik~~ 164 (281)
..++.|...++.|+.+|.=. -||.. .++.+.++|+..|++-- ...+.++..+.++.+++.
T Consensus 68 ~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a 147 (285)
T TIGR02320 68 DVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDA 147 (285)
T ss_pred HHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHh
Confidence 44666666677885555444 56654 48889999999999911 111233445555565554
Q ss_pred --CCcEEEEEC-----CC----CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 165 --GAKAGVVLN-----PA----TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 165 --G~k~Glai~-----p~----t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+-.+-|.-. .. .-+++.+.|.+. +|.|.+. + + +...+.++++.+.++..-.+.++.+-
T Consensus 148 ~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv~----~--~----~~~~~ei~~~~~~~~~~~p~~pl~~~ 217 (285)
T TIGR02320 148 QTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMIH----S--R----KKDPDEILEFARRFRNHYPRTPLVIV 217 (285)
T ss_pred ccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEec----C--C----CCCHHHHHHHHHHhhhhCCCCCEEEe
Confidence 333333211 11 123455555553 8998774 1 1 01223333443333211011233332
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+-+ .-++.++.+.|++.++.|...+.+
T Consensus 218 ~~~~~~~~~~eL~~lG~~~v~~~~~~~~a 246 (285)
T TIGR02320 218 PTSYYTTPTDEFRDAGISVVIYANHLLRA 246 (285)
T ss_pred cCCCCCCCHHHHHHcCCCEEEEhHHHHHH
Confidence 3322 236889999999999999887653
|
A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model. |
| >TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type | Back alignment and domain information |
|---|
Probab=93.94 E-value=2.1 Score=42.90 Aligned_cols=185 Identities=16% Similarity=0.127 Sum_probs=104.9
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc----CCCEEEEccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA----GADIVSVHCE 147 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a----GAd~Itvh~E 147 (281)
.+..+.|.+.|+|+|++ |.+..+ .--.+.++.|++. .+..+-++... + .+-++...++ +.+.|++..-
T Consensus 26 ~~ia~~L~~~GV~~IEv----G~p~~s-~~d~e~v~~i~~~~~~~~i~al~r~-~-~~did~a~~al~~~~~~~v~i~~~ 98 (494)
T TIGR00973 26 LQIALALERLGVDIIEA----GFPVSS-PGDFEAVQRIARTVKNPRVCGLARC-V-EKDIDAAAEALKPAEKFRIHTFIA 98 (494)
T ss_pred HHHHHHHHHcCCCEEEE----ECCCCC-HHHHHHHHHHHHhCCCCEEEEEcCC-C-HHhHHHHHHhccccCCCEEEEEEc
Confidence 34556778889998887 422211 1113556666432 32334443221 2 2245555554 6677776543
Q ss_pred ccc--------------cccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhcc-----CCEEEEEeecCCCCCCccc
Q 023494 148 QSS--------------TIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 148 a~~--------------~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~ 206 (281)
..+ .+.+.+.++.+|++|..+.+...-. ++.+.+.++++. +|.|.+ |-.-|....
T Consensus 99 ~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~Ed~~r~d~~~l~~~~~~~~~~Ga~~i~l----~DTvG~~~P 174 (494)
T TIGR00973 99 TSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVEFSCEDAGRTEIPFLARIVEAAINAGATTINI----PDTVGYALP 174 (494)
T ss_pred cCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEcCCCCCCCHHHHHHHHHHHHHcCCCEEEe----CCCCCCCCH
Confidence 210 1224478888999998876654322 566666665543 566654 444454444
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHHH
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGIK 271 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l~ 271 (281)
.+..+.++.+++.++.. .+.+|++ |-|.-..|.-..+++||+.+ =++++ ++.+.++.+..|+
T Consensus 175 ~~~~~~i~~l~~~~~~~-~~v~l~~H~HND~GlAvANalaAv~aGa~~v--d~tv~GlGERaGNa~le~vv~~L~ 246 (494)
T TIGR00973 175 AEYGNLIKGLRENVPNI-DKAILSVHCHNDLGLAVANSLAAVQNGARQV--ECTINGIGERAGNAALEEVVMALK 246 (494)
T ss_pred HHHHHHHHHHHHhhccc-cCceEEEEeCCCCChHHHHHHHHHHhCCCEE--EEEeecccccccCccHHHHHHHHH
Confidence 55567777777765421 1345766 88888888888999999965 23333 2345555555554
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes. |
| >PRK02261 methylaspartate mutase subunit S; Provisional | Back alignment and domain information |
|---|
Probab=93.93 E-value=1.8 Score=35.77 Aligned_cols=104 Identities=19% Similarity=0.126 Sum_probs=60.9
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEec
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDG 233 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDG 233 (281)
+...++..|.++ +.+.+.+|.+.+.+.+. .+|+|.+-+... .-.+...+-+++++ +.+. +++|.+.|
T Consensus 23 v~~~lr~~G~eV-i~LG~~vp~e~i~~~a~~~~~d~V~lS~~~~-----~~~~~~~~~~~~L~----~~~~~~~~i~vGG 92 (137)
T PRK02261 23 LDRALTEAGFEV-INLGVMTSQEEFIDAAIETDADAILVSSLYG-----HGEIDCRGLREKCI----EAGLGDILLYVGG 92 (137)
T ss_pred HHHHHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEcCccc-----cCHHHHHHHHHHHH----hcCCCCCeEEEEC
Confidence 344566677665 45566678777666654 388887633321 11222222233333 3322 57788888
Q ss_pred CCC------hhcHHHHHHcCCcEEEEcccccC-CCCHHHHHHHHHHhcCc
Q 023494 234 GVG------PKNAYKVIEAGANALVAGSAVFG-AKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 234 GI~------~e~i~~~~~aGAD~~VvGSaIf~-a~dp~~~~~~l~~~~~~ 276 (281)
.+. .+..+.+.+.|+|.+ |. ..++++.+..+++.+++
T Consensus 93 ~~~~~~~~~~~~~~~l~~~G~~~v------f~~~~~~~~i~~~l~~~~~~ 136 (137)
T PRK02261 93 NLVVGKHDFEEVEKKFKEMGFDRV------FPPGTDPEEAIDDLKKDLNQ 136 (137)
T ss_pred CCCCCccChHHHHHHHHHcCCCEE------ECcCCCHHHHHHHHHHHhcc
Confidence 883 345568899997743 43 35777888888876654
|
|
| >PRK11197 lldD L-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.35 Score=46.90 Aligned_cols=110 Identities=17% Similarity=0.259 Sum_probs=68.6
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCcc--chhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSF--IESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f--~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.++++++. +..+ .+..=...+..+...+. +|.|.+. -+ +|..+ .+.+++-|.++++... .+++|.+
T Consensus 235 ~di~~lr~~~~~pv--ivKgV~s~~dA~~a~~~Gvd~I~Vs-~h---GGr~~d~~~~t~~~L~~i~~a~~---~~~~vi~ 305 (381)
T PRK11197 235 KDLEWIRDFWDGPM--VIKGILDPEDARDAVRFGADGIVVS-NH---GGRQLDGVLSSARALPAIADAVK---GDITILA 305 (381)
T ss_pred HHHHHHHHhCCCCE--EEEecCCHHHHHHHHhCCCCEEEEC-CC---CCCCCCCcccHHHHHHHHHHHhc---CCCeEEe
Confidence 346677764 3333 22222566666666664 9999874 22 33222 2445666666665442 2478999
Q ss_pred ecCCC-hhcHHHHHHcCCcEEEEcccccCC------CCHHHHHHHHHHhc
Q 023494 232 DGGVG-PKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSK 274 (281)
Q Consensus 232 DGGI~-~e~i~~~~~aGAD~~VvGSaIf~a------~dp~~~~~~l~~~~ 274 (281)
||||. ...+-+.+..|||.+-+|+.+... +.....++.|++.+
T Consensus 306 dGGIr~g~Di~KALaLGA~~V~iGr~~l~~la~~G~~gv~~~l~~l~~El 355 (381)
T PRK11197 306 DSGIRNGLDVVRMIALGADTVLLGRAFVYALAAAGQAGVANLLDLIEKEM 355 (381)
T ss_pred eCCcCcHHHHHHHHHcCcCceeEhHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99999 558888899999999999886521 23445555555543
|
|
| >cd03311 CIMS_C_terminal_like CIMS - Cobalamine-independent methonine synthase, or MetE, C-terminal domain_like | Back alignment and domain information |
|---|
Probab=93.91 E-value=0.57 Score=43.97 Aligned_cols=145 Identities=16% Similarity=0.210 Sum_probs=72.3
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCccccc-------ccCCHHHHHHcCc-CCCCCeeEEEEecCh----------hhHHHHH
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPN-------ITIGPLVVDALRP-VTDLPLDVHLMIVEP----------EQRVPDF 134 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn-------~~~G~~~I~~ir~-~t~~~idaHLmv~dp----------~~~i~~~ 134 (281)
.++++.+.++|+++|++|--.-.+.+. ..+-...++.++. ..+..+.+|+--.|. ...++.+
T Consensus 158 ~~e~~~l~~aG~~~iQiDEP~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~v~lHiC~G~~~~~~~~~~~y~~i~~~l 237 (332)
T cd03311 158 REEIRDLYDAGCRYIQIDEPALAEGLPLEPDDLAADYLKWANEALADRPDDTQIHTHICYGNFRSTWAAEGGYEPIAEYI 237 (332)
T ss_pred HHHHHHHHHcCCCEEEeecchhhccCCcccHHHHHHHHHHHHHHHHhCCCCCEEEEEEECCCCcccccccCcHHHHHHHH
Confidence 355567778999999998332111111 0112233344443 234566777765665 4456778
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCC----HHHHHHhhcc-CCEEEE--EeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATS----LSAIECVLDV-VDLVLI--MSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~----ie~~~~~l~~-vD~Ilv--msV~pG~~GQ~f~ 206 (281)
.+.++|.+++-.......++ +.++... .|..+++ .+++.++ .+.+...+.. .+++-. +.+.|+.+=..+.
T Consensus 238 ~~~~vd~~~le~~~~~~~~~-~~l~~~~-~~k~l~~GvVd~~~~~~e~~e~v~~ri~~~~~~~~~~~l~lsp~CGl~~~~ 315 (332)
T cd03311 238 FELDVDVFFLEYDNSRAGGL-EPLKELP-YDKKVGLGVVDVKSPEVESPEEVKDRIEEAAKYVPLEQLWVSPDCGFATRE 315 (332)
T ss_pred HhCCCCEEEEEEcCCCCcch-HHHHhCC-CCCEEEeeeecCCCCCCCCHHHHHHHHHHHHhhCCHHHEEECCCCCCCcCC
Confidence 88999999988753101122 2233322 2566665 4444432 3333333222 222210 1235644322122
Q ss_pred -hhHHHHHHHHHHH
Q 023494 207 -ESQVKKISDLRRM 219 (281)
Q Consensus 207 -~~~l~kI~~lr~l 219 (281)
.....|++.+.+.
T Consensus 316 ~~~a~~kl~~~~~~ 329 (332)
T cd03311 316 RGNALTKLENMVKA 329 (332)
T ss_pred CchhHHHHHHHHHH
Confidence 3446667666654
|
Many members have been characterized as 5-methyltetrahydropteroyltriglutamate-homocysteine methyltransferases, EC:2.1.1.14, mostly from bacteria and plants. This enzyme catalyses the last step in the production of methionine by transferring a methyl group from 5-methyltetrahydrofolate to L-homocysteine without using an intermediate methyl carrier. The active enzyme has a dual (beta-alpha)8-barrel structure, and this model covers the C-terminal barrel, and a few single-barrel sequences most similar to the C-terminal barrel. It is assumed that the homologous N-terminal barrel has evolved from the C-terminus via gene duplication and has subsequently lost binding sites, and it seems as if the two barrels forming the active enzyme may sometimes reside on different polypeptides. The C-terminal domain incorporates the Zinc ion, which binds and activates homocysteine. Sidechains from |
| >PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=0.7 Score=43.93 Aligned_cols=111 Identities=15% Similarity=0.245 Sum_probs=67.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhcc---CCEEEEEeecCCCCCCcc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLDV---VDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~~---vD~IlvmsV~pG~~GQ~f 205 (281)
..+.+.+.|.-.+..-.. .+....+.+..+..++.+++++.... ..++..++++. +|+|.+=+.+ | .
T Consensus 53 LA~~a~~~G~~~~~~k~~---~e~~~~~~r~~~~~~l~v~~~vg~~~~~~~~~~~Lv~ag~~~d~i~iD~a~----g--h 123 (326)
T PRK05458 53 IAEWLAENGYFYIMHRFD---PEARIPFIKDMHEQGLIASISVGVKDDEYDFVDQLAAEGLTPEYITIDIAH----G--H 123 (326)
T ss_pred HHHHHHHcCCEEEEecCC---HHHHHHHHHhccccccEEEEEecCCHHHHHHHHHHHhcCCCCCEEEEECCC----C--c
Confidence 344556777544443311 33444555555555777888876532 33667777663 3988774444 1 2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.....+-|+++|+..+. .++ +-|.|. .+.+..+.++|+|++.+|
T Consensus 124 ~~~~~e~I~~ir~~~p~----~~v-i~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 124 SDSVINMIQHIKKHLPE----TFV-IAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred hHHHHHHHHHHHhhCCC----CeE-EEEecCCHHHHHHHHHcCcCEEEEC
Confidence 23445557777776542 333 555455 899999999999999877
|
|
| >PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.90 E-value=5 Score=36.80 Aligned_cols=170 Identities=13% Similarity=0.113 Sum_probs=96.8
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccc-c-cCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPN-I-TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn-~-~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+.-+.+.+.|+.++-=-.-|-..-|. + .+|.+-++.|++. .++++....+-.. .++.+.+ .+|++-+....
T Consensus 33 ~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~~Tev~d~~---~v~~~~e-~vdilqIgs~~ 108 (250)
T PRK13397 33 LAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLSVSEIMSER---QLEEAYD-YLDVIQVGARN 108 (250)
T ss_pred HHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCEEEeeCCHH---HHHHHHh-cCCEEEECccc
Confidence 33455778888877554444332332 2 5566666666553 6777776444333 5566666 59999999774
Q ss_pred cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-----C-CEEEEE-eecCCCCCCccc-hhHHHHHHHHHHHh
Q 023494 149 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-----V-DLVLIM-SVNPGFGGQSFI-ESQVKKISDLRRMC 220 (281)
Q Consensus 149 ~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-----v-D~Ilvm-sV~pG~~GQ~f~-~~~l~kI~~lr~l~ 220 (281)
..+ ..+++++-+.|+-+.+.-.....++++...++. . ++++.. ++ -||.. ... .-.+.-|..+++..
T Consensus 109 --~~n-~~LL~~va~tgkPVilk~G~~~t~~e~~~A~e~i~~~Gn~~i~L~eRg~-~~Y~~-~~~n~~dl~ai~~lk~~~ 183 (250)
T PRK13397 109 --MQN-FEFLKTLSHIDKPILFKRGLMATIEEYLGALSYLQDTGKSNIILCERGV-RGYDV-ETRNMLDIMAVPIIQQKT 183 (250)
T ss_pred --ccC-HHHHHHHHccCCeEEEeCCCCCCHHHHHHHHHHHHHcCCCeEEEEcccc-CCCCC-ccccccCHHHHHHHHHHh
Confidence 233 468888888888777776634444333332222 2 444443 33 23321 111 12244455555543
Q ss_pred hhcCCCCeEEEe----cCCCh---hcHHHHHHcCCcEEEEcccc
Q 023494 221 LEKGVNPWIEVD----GGVGP---KNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 221 ~~~~~~~~I~VD----GGI~~---e~i~~~~~aGAD~~VvGSaI 257 (281)
+++|.+| +|.+. ......+.+|||.+++-.-.
T Consensus 184 -----~lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~ 222 (250)
T PRK13397 184 -----DLPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHP 222 (250)
T ss_pred -----CCCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecC
Confidence 4688888 55532 34556688999988876433
|
|
| >PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.85 E-value=1.1 Score=43.59 Aligned_cols=126 Identities=15% Similarity=0.208 Sum_probs=71.6
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe-cChhhHHHHHHHcC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI-VEPEQRVPDFIKAG 138 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-~dp~~~i~~~~~aG 138 (281)
|-.=++-.|..++. ++.+.+.|+|++-+ |+......-...++.+|+. +....++++- .+|...++.+ ..+
T Consensus 229 I~~DLK~~Di~~~v--v~~~a~aGAD~vTV-----H~ea~~~ti~~ai~~akk~-GikvgVD~lnp~tp~e~i~~l-~~~ 299 (391)
T PRK13307 229 IVADLKTLDTGNLE--ARMAADATADAVVI-----SGLAPISTIEKAIHEAQKT-GIYSILDMLNVEDPVKLLESL-KVK 299 (391)
T ss_pred EEEEecccChhhHH--HHHHHhcCCCEEEE-----eccCCHHHHHHHHHHHHHc-CCEEEEEEcCCCCHHHHHHHh-hCC
Confidence 33444444444443 55666778877644 2221111112355555653 5555554443 4666666665 779
Q ss_pred CCEEEEcccc--cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 139 ADIVSVHCEQ--SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 139 Ad~Itvh~Ea--~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
.|+|.+|... .......+-++.+|+.+..+-+.+.++-..+.+..+++ .+|++.+.
T Consensus 300 vD~Vllht~vdp~~~~~~~~kI~~ikk~~~~~~I~VdGGI~~eti~~l~~aGADivVVG 358 (391)
T PRK13307 300 PDVVELHRGIDEEGTEHAWGNIKEIKKAGGKILVAVAGGVRVENVEEALKAGADILVVG 358 (391)
T ss_pred CCEEEEccccCCCcccchHHHHHHHHHhCCCCcEEEECCcCHHHHHHHHHcCCCEEEEe
Confidence 9999999521 01122345677788776565566666656667777765 48987664
|
|
| >cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=93.82 E-value=1.9 Score=40.00 Aligned_cols=165 Identities=15% Similarity=0.055 Sum_probs=94.9
Q ss_pred HHHHHHHHcC-----CCeEEEEeeeCcccccccCCHHHHHHcCcC-C-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 74 EQVKAVELAG-----CDWIHVDVMDGRFVPNITIGPLVVDALRPV-T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 74 ~~l~~l~~~G-----~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.++.|.+.| ++.|++ +.|++ -..+.++++.+. . ...+.++ ...+.. -++.+.++|++.|.+..
T Consensus 25 ~i~~~L~~~G~~~~~v~~IE~----~s~~~---~d~~~v~~~~~~~~~~~~v~~~-~r~~~~-die~A~~~g~~~v~i~~ 95 (279)
T cd07947 25 KIYDYLHELGGGSGVIRQTEF----FLYTE---KDREAVEACLDRGYKFPEVTGW-IRANKE-DLKLVKEMGLKETGILM 95 (279)
T ss_pred HHHHHHHHcCCCCCccceEEe----cCcCh---HHHHHHHHHHHcCCCCCEEEEE-ecCCHH-HHHHHHHcCcCEEEEEE
Confidence 5567788899 888765 55544 223444444322 1 1235554 444543 46888999999998764
Q ss_pred ccc--------------ccccHHHHHHHHHHcCCcEEEEECCCCCH-------HHHHHhhc-----cCC-EEEEEeecCC
Q 023494 147 EQS--------------STIHLHRTLNQIKDLGAKAGVVLNPATSL-------SAIECVLD-----VVD-LVLIMSVNPG 199 (281)
Q Consensus 147 Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~p~t~i-------e~~~~~l~-----~vD-~IlvmsV~pG 199 (281)
-++ ..+.+.+.++.+|+.|+++.+.+.-.++. +.+.++.+ .+| .|.+- =--|
T Consensus 96 s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~d~~~~v~~~~~~~~~~~~~~G~~~~i~l~-DTvG 174 (279)
T cd07947 96 SVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKESGIPVKIRLC-DTLG 174 (279)
T ss_pred cCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEEcccCCCcccchHHHHHHHHHHHHHCCCCEEEEec-cCCC
Confidence 321 01225567777889999888776433322 24555544 266 34331 1123
Q ss_pred CCCCcc-----chhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 200 FGGQSF-----IESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 200 ~~GQ~f-----~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
.. .++ ..++.+.++.+++..+ -.+.+|++ |-|....|.-..+++|++.|
T Consensus 175 ~a-~P~~~~~~p~~v~~l~~~l~~~~~--~p~~~l~~H~Hn~~Gla~AN~laA~~aG~~~v 232 (279)
T cd07947 175 YG-VPYPGASLPRSVPKIIYGLRKDCG--VPSENLEWHGHNDFYKAVANAVAAWLYGASWV 232 (279)
T ss_pred cC-CccccccchHHHHHHHHHHHHhcC--CCCceEEEEecCCCChHHHHHHHHHHhCCCEE
Confidence 22 222 1334455666655421 01234555 88888889999999999976
|
Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with |
| >KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.3 Score=47.60 Aligned_cols=132 Identities=20% Similarity=0.298 Sum_probs=84.7
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh--hHHHHHHHcCCCEEEEccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~--~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+..++.+.++|+|.+-+|.-.|+- .|-.++|+.+|+. |.+ ..|--|.- .-.+.++++|||++-+..-..
T Consensus 253 K~rl~ll~~aGvdvviLDSSqGnS----~~qiemik~iK~~yP~l----~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsG 324 (503)
T KOG2550|consen 253 KERLDLLVQAGVDVVILDSSQGNS----IYQLEMIKYIKETYPDL----QIIAGNVVTKEQAANLIAAGADGLRVGMGSG 324 (503)
T ss_pred hHHHHHhhhcCCcEEEEecCCCcc----hhHHHHHHHHHhhCCCc----eeeccceeeHHHHHHHHHccCceeEeccccC
Confidence 345778889999999999888843 3677899999884 543 33444443 246678899999998876532
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+ ++- -++ +|.+ |. .|. ..++ ++.+.. +..++++
T Consensus 325 S---------------------iCi------Tqe---------vma~--Gr-pQ~--TAVy-~va~~A-----~q~gvpv 357 (503)
T KOG2550|consen 325 S---------------------ICI------TQK---------VMAC--GR-PQG--TAVY-KVAEFA-----NQFGVPC 357 (503)
T ss_pred c---------------------eee------ece---------eeec--cC-Ccc--cchh-hHHHHH-----HhcCCce
Confidence 1 000 001 2332 21 111 1122 122221 1235788
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..||||. ..++.+.+.+||+.+-.|+-+-.
T Consensus 358 iADGGiq~~Ghi~KAl~lGAstVMmG~lLAg 388 (503)
T KOG2550|consen 358 IADGGIQNVGHVVKALGLGASTVMMGGLLAG 388 (503)
T ss_pred eecCCcCccchhHhhhhcCchhheecceeee
Confidence 8999998 88999999999999999987764
|
|
| >cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=93.78 E-value=1.1 Score=42.44 Aligned_cols=112 Identities=19% Similarity=0.238 Sum_probs=65.2
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+...+.++|.=.+. |.+. +.+...+.++.+|+ ...++..+.+. ...+.++.+++ .+|+|.+ +... |.+ +
T Consensus 50 ma~ava~~GglGvi-~~~~-~~~~~~~~i~~vk~-~l~v~~~~~~~~~~~~~~~~l~eagv~~I~v---d~~~-G~~--~ 120 (325)
T cd00381 50 MAIAMARLGGIGVI-HRNM-SIEEQAEEVRKVKG-RLLVGAAVGTREDDKERAEALVEAGVDVIVI---DSAH-GHS--V 120 (325)
T ss_pred HHHHHHHCCCEEEE-eCCC-CHHHHHHHHHHhcc-CceEEEecCCChhHHHHHHHHHhcCCCEEEE---ECCC-CCc--H
Confidence 55567788865543 5443 23445555555552 23445555432 12355565555 4787765 2222 211 4
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
...+.|+++++..+ +++|.+....+.+.+..+.++|||.+++|
T Consensus 121 ~~~~~i~~ik~~~p----~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg 163 (325)
T cd00381 121 YVIEMIKFIKKKYP----NVDVIAGNVVTAEAARDLIDAGADGVKVG 163 (325)
T ss_pred HHHHHHHHHHHHCC----CceEEECCCCCHHHHHHHHhcCCCEEEEC
Confidence 55666777776532 35665544445899999999999999984
|
IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents. |
| >TIGR00734 hisAF_rel hisA/hisF family protein | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.28 Score=43.90 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=51.0
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHH--cCCcE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE--AGANA 250 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~--aGAD~ 250 (281)
..|++..+.|.+ .+|.+.+.-.+. ..|. +..++-|+++.+. .+++++|||+ .|.+..+.. .|||-
T Consensus 36 ~dP~~~a~~~~~~g~~~l~ivDLd~-~~~~---~~n~~~i~~i~~~-------~~v~vgGGirs~e~~~~~~~~l~~a~r 104 (221)
T TIGR00734 36 SSPDDAAKVIEEIGARFIYIADLDR-IVGL---GDNFSLLSKLSKR-------VELIADCGVRSPEDLETLPFTLEFASR 104 (221)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEccc-ccCC---cchHHHHHHHHhh-------CcEEEcCccCCHHHHHHHHhhhccceE
Confidence 467777777754 378887765543 2232 2234455555543 3699999999 777877754 36999
Q ss_pred EEEcccccCCC
Q 023494 251 LVAGSAVFGAK 261 (281)
Q Consensus 251 ~VvGSaIf~a~ 261 (281)
+|+||.-++.+
T Consensus 105 vvigT~a~~~p 115 (221)
T TIGR00734 105 VVVATETLDIT 115 (221)
T ss_pred EeecChhhCCH
Confidence 99999988643
|
This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown. |
| >TIGR01496 DHPS dihydropteroate synthase | Back alignment and domain information |
|---|
Probab=93.75 E-value=1.4 Score=40.33 Aligned_cols=95 Identities=25% Similarity=0.335 Sum_probs=53.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--cccccc-CCH--------HHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNIT-IGP--------LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~-~G~--------~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
+.....+..+.+.+.|+++| || |. .-|... ..+ ..++.+++.++.|+-+| +.+|. .++.+.+
T Consensus 21 ~~~~~~~~a~~~~~~GA~iI--DI--G~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~~~plsiD--T~~~~-vi~~al~ 93 (257)
T TIGR01496 21 SVDKAVAHAERMLEEGADII--DV--GGESTRPGADRVSPEEELNRVVPVIKALRDQPDVPISVD--TYRAE-VARAALE 93 (257)
T ss_pred CHHHHHHHHHHHHHCCCCEE--EE--CCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEe--CCCHH-HHHHHHH
Confidence 33445555666778899986 66 31 113211 111 23455555445554443 24444 5677888
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+|+++|- +... .+..+.+..++++|..+.+.-.
T Consensus 94 ~G~~iIN-sis~---~~~~~~~~l~~~~~~~vV~m~~ 126 (257)
T TIGR01496 94 AGADIIN-DVSG---GQDPAMLEVAAEYGVPLVLMHM 126 (257)
T ss_pred cCCCEEE-ECCC---CCCchhHHHHHHcCCcEEEEeC
Confidence 8999763 2221 1134577778899988877543
|
This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284. |
| >TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.75 Score=45.88 Aligned_cols=122 Identities=20% Similarity=0.208 Sum_probs=79.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhh--HHHHHHHcCCCEEEEccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQ--RVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~--~i~~~~~aGAd~Itvh~E 147 (281)
+..+-++.|.+.|+|.|-+|.-+||-. .=.+++++||+. ++.++.+ -|... -...+.++|||+|-+..-
T Consensus 225 ~~~~ra~~Lv~aGVd~i~~D~a~g~~~----~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g 296 (475)
T TIGR01303 225 DVGGKAKALLDAGVDVLVIDTAHGHQV----KMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVG 296 (475)
T ss_pred cHHHHHHHHHHhCCCEEEEeCCCCCcH----HHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCc
Confidence 555667888899999999999998632 234678888874 4555444 43332 356778999999985532
Q ss_pred cc-----------cccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 148 QS-----------STIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 148 a~-----------~~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
.. ...+ +.++.+.++++|+.+.-.=.-.++.+..+.+.-.+|.|++.+...|.
T Consensus 297 ~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~viadGgi~~~~di~kala~GA~~vm~g~~~ag~ 363 (475)
T TIGR01303 297 PGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVWADGGVRHPRDVALALAAGASNVMVGSWFAGT 363 (475)
T ss_pred CCccccCccccCCCCchHHHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEeechhhccc
Confidence 11 0122 33455556777765544433346777777777779999887666665
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302. |
| >PRK05826 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.63 E-value=1 Score=44.86 Aligned_cols=140 Identities=14% Similarity=0.189 Sum_probs=86.4
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCC-cEEEE--ECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCcc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVV--LNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSF 205 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~-k~Gla--i~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f 205 (281)
.++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|. .+.+. |.....++.+++++..+|.|++-.-+-|.. |
T Consensus 178 ~i~~ald~g~d~I~~sfV~-saedv~~l~~~l~~~~~~~~~iiakIEt~eav~nldeI~~~~DgImIgrgDLg~elg--- 253 (465)
T PRK05826 178 DIKFAAEQGVDYIAVSFVR-SAEDVEEARRLLREAGCPHAKIIAKIERAEAVDNIDEIIEASDGIMVARGDLGVEIP--- 253 (465)
T ss_pred HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHcCCcCceEEEEEcCHHHHHhHHHHHHHcCEEEECcchhhhhcC---
Confidence 5677889999999999665 36678888888887776 55554 444446688888888899998743333321 2
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEec----------CCChh---cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDG----------GVGPK---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDG----------GI~~e---~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.+....-.+++.+.+.++| .++.+.- ==+.. .+...+--|+|.+.+..-=-.-.-|.++++.|.+
T Consensus 254 ~~~v~~~qk~Ii~~c~~~g--Kpvi~ATqmLeSM~~~p~PTRAEvsDVanav~dG~D~vmLS~ETA~G~yPveaV~~m~~ 331 (465)
T PRK05826 254 DEEVPGLQKKIIRKAREAG--KPVITATQMLESMIENPRPTRAEVSDVANAVLDGTDAVMLSGETAAGKYPVEAVEAMAR 331 (465)
T ss_pred cHhHHHHHHHHHHHHHHcC--CCEEEECHHHHHHhhCCCCchhhhhhHHHHHHcCCcEEEeccccccCcCHHHHHHHHHH
Confidence 2333334444444444443 3444431 11111 3444566699999886333233568888887776
Q ss_pred hcC
Q 023494 273 SKR 275 (281)
Q Consensus 273 ~~~ 275 (281)
.+.
T Consensus 332 I~~ 334 (465)
T PRK05826 332 ICK 334 (465)
T ss_pred HHH
Confidence 543
|
|
| >TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.9 Score=35.51 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhhhcCC-CCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 210 VKKISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~-~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.+.++++.+.+++++. ++++.+.|.+-.+...++.++|+|.++ ....++.+.++.+.+.+
T Consensus 67 ~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gvd~~~-----~~gt~~~~i~~~l~~~~ 127 (132)
T TIGR00640 67 LTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGVAEIF-----GPGTPIPESAIFLLKKL 127 (132)
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCCCEEE-----CCCCCHHHHHHHHHHHH
Confidence 3344455555544444 466766666777789999999998664 22357778888777654
|
Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2. |
| >PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=1.1 Score=42.55 Aligned_cols=162 Identities=15% Similarity=0.130 Sum_probs=87.9
Q ss_pred HHcCCCeEEEEee-eCcccccc-cC----CHHHHHHcCcCCCCCeeEEEEec----ChhhHHHHHHH-cCCCEEEEcccc
Q 023494 80 ELAGCDWIHVDVM-DGRFVPNI-TI----GPLVVDALRPVTDLPLDVHLMIV----EPEQRVPDFIK-AGADIVSVHCEQ 148 (281)
Q Consensus 80 ~~~G~d~iHiDIm-DG~fvpn~-~~----G~~~I~~ir~~t~~~idaHLmv~----dp~~~i~~~~~-aGAd~Itvh~Ea 148 (281)
++.|+|+| ||- ++.. |+. .- -..+++.+.+.++.|+.+ +.+. ||.- ++...+ ++-.-..+...
T Consensus 86 ~~~GAd~I--dl~~~s~d-p~~~d~~~~e~~~~Vk~V~eavd~PL~I-d~s~n~~kD~ev-leaale~~~g~~pLInSa- 159 (319)
T PRK04452 86 EEYGADMI--TLHLISTD-PNGKDKSPEEAAKTVEEVLQAVDVPLII-GGSGNPEKDAEV-LEKVAEAAEGERCLLGSA- 159 (319)
T ss_pred HHhCCCEE--EEECCCCC-cccccchHHHHHHHHHHHHHhCCCCEEE-ecCCCCCCCHHH-HHHHHHHhCCCCCEEEEC-
Confidence 48899996 554 3322 432 11 124666666667788765 2343 5553 343333 33222333333
Q ss_pred cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-----C--CEEEEEeecCCCC----CCccchhHHHHHHHHH
Q 023494 149 SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-----V--DLVLIMSVNPGFG----GQSFIESQVKKISDLR 217 (281)
Q Consensus 149 ~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-----v--D~IlvmsV~pG~~----GQ~f~~~~l~kI~~lr 217 (281)
+.++.++....++++|..++... |. +++.++++... + +-|.+ +|+.. |+...-..+++||++.
T Consensus 160 -t~en~~~i~~lA~~y~~~Vva~s-~~-Dln~ak~L~~~l~~~Gi~~edIvi---DP~~~~lg~g~e~~~~~~e~IR~aA 233 (319)
T PRK04452 160 -EEDNYKKIAAAAMAYGHAVIAWS-PL-DINLAKQLNILLTELGVPRERIVM---DPTTGALGYGIEYSYSVMERIRLAA 233 (319)
T ss_pred -CHHHHHHHHHHHHHhCCeEEEEc-HH-HHHHHHHHHHHHHHcCCCHHHEEE---eCCcccccCCHHHHHHHHHHHHHHH
Confidence 24568899999999998666543 22 35555554332 2 22322 77765 6665555566666554
Q ss_pred HHhhhcCCCCeEEEec--------------------------CCChh--cHHHHHHcCCcEEEEc
Q 023494 218 RMCLEKGVNPWIEVDG--------------------------GVGPK--NAYKVIEAGANALVAG 254 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDG--------------------------GI~~e--~i~~~~~aGAD~~VvG 254 (281)
=. ..+-+++++.-.= |+-.| +...++.+|+|++|+=
T Consensus 234 l~-~d~~l~~P~i~~~~~~~~~~kea~~~~~~~~~~g~~~~r~~~~E~~~a~~~~~~ga~i~vm~ 297 (319)
T PRK04452 234 LK-GDEMLQMPMISGVGFEAWKAKEAWMPEEEDPEWGPREYRGILWEAVTALTLLLAGADIFMMR 297 (319)
T ss_pred hc-CCCcCCCCeEecchhhhhhccccccccccccccccchhccHHHHHHHHHHHHHhcCcEEEEe
Confidence 32 4444556643211 22223 3445677899998863
|
|
| >cd06822 PLPDE_III_YBL036c_euk Pyridoxal 5-phosphate (PLP)-binding TIM barrel domain of Type III PLP-Dependent Enzymes, Eukaryotic YBL036c-like proteins | Back alignment and domain information |
|---|
Probab=93.59 E-value=2.4 Score=38.24 Aligned_cols=178 Identities=21% Similarity=0.224 Sum_probs=96.4
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc----CCCCCeeEEEEecChhhHHHHHHH-
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP----VTDLPLDVHLMIVEPEQRVPDFIK- 136 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~----~t~~~idaHLmv~dp~~~i~~~~~- 136 (281)
+.|++.--..-.++++.+.++|+.. ||..-++++.. .++ .+.-|+.=.=-.+-++..+.
T Consensus 24 v~LvaVsK~~~~~~i~~~~~~G~~~---------------fGENrvQe~~~K~~~l~~-~i~wHfIG~LQ~NK~k~i~~~ 87 (227)
T cd06822 24 PRLVAVSKTKPAELIKEAYDAGQRH---------------FGENYVQELIEKAPDLPI-DIKWHFIGHLQSNKVKKLLKV 87 (227)
T ss_pred cEEEEEECCCCHHHHHHHHHcCCcc---------------ccCcHHHHHHHHHHhccC-CceEEEECCCchhhHHHHhcc
Confidence 3566665556667788888888752 23333433321 121 24456543111123444433
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHc--CCcEE--EEECCCC-------CHHHHHHh---h----ccCCEEEEEeecC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAG--VVLNPAT-------SLSAIECV---L----DVVDLVLIMSVNP 198 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~G--lai~p~t-------~ie~~~~~---l----~~vD~IlvmsV~p 198 (281)
.-+++| |.-+ +.....++-+.+.+. |..+. +-+|.+. +.+.+.++ + +.+.+.-+|+..|
T Consensus 88 ~~~~~i--hsvD-s~~la~~L~~~a~~~~~~~~~~VlIqVn~g~e~~K~Gv~~~e~~~l~~~i~~~~~~L~l~GLMt~~~ 164 (227)
T cd06822 88 PNLYMV--ETVD-SEKLADKLNKAWEKLGEREPLKVMVQVNTSGEESKSGLEPSEAVELVKHIIEECPNLKFSGLMTIGS 164 (227)
T ss_pred ccccEE--EecC-CHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCCCCCCCCHHHHHHHHHHHHhhCCCceEEEEEeeCC
Confidence 135654 5443 234444444555555 65444 4455433 11333332 2 2356777888755
Q ss_pred CCCC-CccchhHHHHHHHHHHHhhhc-CCCC-eEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 199 GFGG-QSFIESQVKKISDLRRMCLEK-GVNP-WIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 199 G~~G-Q~f~~~~l~kI~~lr~l~~~~-~~~~-~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-... +.-....+++++++++.+.+. +... .-.+-.|.+.+ ....++.|++.+=+||+||+
T Consensus 165 ~~~~~~~~~r~~f~~l~~l~~~L~~~~g~~~~~~~lSmGmS~D-~~~Ai~~GsT~VRiGt~IFg 227 (227)
T cd06822 165 FGYSLSSGPNPDFLCLVDCRKKVCEKLGINPDDLELSMGMSAD-FEHAIEMGSTNVRVGSAIFG 227 (227)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHhcCCCCCCCEEEecccHh-HHHHHHcCCCEEeCCchhcC
Confidence 3222 122245677888888777654 3331 13578888875 55567899999999999995
|
This subfamily contains mostly uncharacterized eukaryotic proteins with similarity to the yeast hypothetical protein YBL036c, which is homologous to a Pseudomonas aeruginosa gene that is co-transcribed with a known proline biosynthetic gene. YBL036c is a single domain monomeric protein with a typical TIM barrel fold. It binds the PLP cofactor and has been shown to exhibit amino acid racemase activity. The YBL036c structure is similar to the N-terminal domain of the fold type III PLP-dependent enzymes, bacterial alanine racemase and eukaryotic ornithine decarboxylase, which are two-domain dimeric proteins. The lack of a second domain in YBL036c may explain limited D- to L-alanine racemase or non-specific racemase activity. Some members of this subfamily are also referred to as PROSC (Proline synthetase co-transcribed bacterial homolog) |
| >TIGR01093 aroD 3-dehydroquinate dehydratase, type I | Back alignment and domain information |
|---|
Probab=93.52 E-value=1.1 Score=40.02 Aligned_cols=111 Identities=14% Similarity=0.193 Sum_probs=69.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccc--ccccCCHHHHHHcCcC-CCCCeeEEEEecC--------h
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV--PNITIGPLVVDALRPV-TDLPLDVHLMIVE--------P 127 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fv--pn~~~G~~~I~~ir~~-t~~~idaHLmv~d--------p 127 (281)
+|+.++..-+..+...+++.+ ..|+|.+++.+ |. |- .+...-....+.++.. +++|+.+++-... .
T Consensus 1 ~i~v~~~~~~~~~~~~~~~~~-~~~aD~vElRl-D~-l~~~~~~~~~~~~~~~~~~~~~~~piI~T~R~~~eGG~~~~~~ 77 (228)
T TIGR01093 1 KIFVPLTAPDLEEALATAEKI-CKGADIVELRV-DL-LKDPSSNNDVDALIEQLSQLRPDKPLIFTIRTISEGGKFPGNE 77 (228)
T ss_pred CEEEEccCCCHHHHHHHHHHh-ccCCCEEEEEe-ch-hcccCcHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCH
Confidence 367777777777777777777 67899988852 32 10 0000001233333322 4689999988753 2
Q ss_pred hhHHHHH----HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 128 EQRVPDF----IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 128 ~~~i~~~----~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
..|++.+ ...++|+|-+-... +.+...++++.+++.|.++-+..+
T Consensus 78 ~~~~~ll~~~~~~~~~d~vDiEl~~-~~~~~~~l~~~~~~~~~kvI~S~H 126 (228)
T TIGR01093 78 EEYLEELKRAADSPGPDFVDIELFL-PDDAVKELINIAKKGGTKIIMSYH 126 (228)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEccC-CHHHHHHHHHHHHHCCCEEEEecc
Confidence 3455443 34578999998764 234466777878889999988875
|
Type II 3-dehydroquinate dehydratase, designated AroQ, is described by TIGR01088. |
| >cd00408 DHDPS-like Dihydrodipicolinate synthase family | Back alignment and domain information |
|---|
Probab=93.52 E-value=2.6 Score=38.44 Aligned_cols=172 Identities=18% Similarity=0.119 Sum_probs=100.4
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC----HHHHHHcCcCC--CCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG----PLVVDALRPVT--DLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G----~~~I~~ir~~t--~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ -|+.--...+. .++++..++.. +.++.++.-..+..+ +.+.+.+
T Consensus 14 ~iD~~~~~~~i~~l~~~Gv~gi~~---~GstGE~~~ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~ 90 (281)
T cd00408 14 EVDLDALRRLVEFLIEAGVDGLVV---LGTTGEAPTLTDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE 90 (281)
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CCCCcccccCCHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence 468888999999999999998643 23322223333 34444444432 478888887766553 4556778
Q ss_pred cCCCEEEEccccc---ccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCEQS---STIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~Ea~---~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|+|.+.+..-.. +.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.++.+...++.+ |.-.
T Consensus 91 ~Gad~v~v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~~~~~~~L~~~~~v~gi----------K~s~ 160 (281)
T cd00408 91 AGADGVLVVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLSPETIARLAEHPNIVGI----------KDSS 160 (281)
T ss_pred cCCCEEEECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCCHHHHHHHhcCCCEEEE----------EeCC
Confidence 9999999875321 12334444444444 356666655664 245667776653333322 1111
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
..+.++.++++..+ . .+.|=.|- .+.+......|++..+.|.+
T Consensus 161 ~d~~~~~~~~~~~~---~--~~~v~~G~-d~~~~~~l~~G~~G~i~~~~ 203 (281)
T cd00408 161 GDLDRLTRLIALLG---P--DFAVLSGD-DDLLLPALALGADGAISGAA 203 (281)
T ss_pred CCHHHHHHHHHhcC---C--CeEEEEcc-hHHHHHHHHcCCCEEEehHH
Confidence 23445555555432 1 24444454 45667778999999999954
|
A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family. |
| >cd02911 arch_FMN Archeal FMN-binding domain | Back alignment and domain information |
|---|
Probab=93.42 E-value=3.2 Score=37.36 Aligned_cols=132 Identities=20% Similarity=0.293 Sum_probs=78.7
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-----cCC----------HHHHHHcCcCCCCC
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-----TIG----------PLVVDALRPVTDLP 117 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-----~~G----------~~~I~~ir~~t~~~ 117 (281)
+++....+..+|...|+..+.+..+.+.+. .+.|++. =| .|+- ..| .++++.+|+ .+.|
T Consensus 68 ~~~~~~p~~vqi~g~~~~~~~~aa~~~~~~-~~~ielN--~g--CP~~~v~~~g~G~~Ll~~p~~l~eiv~avr~-~~~p 141 (233)
T cd02911 68 LKDSNVLVGVNVRSSSLEPLLNAAALVAKN-AAILEIN--AH--CRQPEMVEAGAGEALLKDPERLSEFIKALKE-TGVP 141 (233)
T ss_pred hhccCCeEEEEecCCCHHHHHHHHHHHhhc-CCEEEEE--CC--CCcHHHhcCCcchHHcCCHHHHHHHHHHHHh-cCCC
Confidence 333345789999999999998888888774 5765443 22 1321 111 345667776 4778
Q ss_pred eeEEEEe---cChhhHHHHHHHcCCCEEEEcccccc-cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEE
Q 023494 118 LDVHLMI---VEPEQRVPDFIKAGADIVSVHCEQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVL 192 (281)
Q Consensus 118 idaHLmv---~dp~~~i~~~~~aGAd~Itvh~Ea~~-~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~Il 192 (281)
+-+-+-. .+...+.+.+.++|+|++|++.-... ..++ +.++.++ .++ ..+.-+-=+..+...+++.. +|.|.
T Consensus 142 VsvKir~g~~~~~~~la~~l~~aG~d~ihv~~~~~g~~ad~-~~I~~i~-~~i-pVIgnGgI~s~eda~~~l~~GaD~Vm 218 (233)
T cd02911 142 VSVKIRAGVDVDDEELARLIEKAGADIIHVDAMDPGNHADL-KKIRDIS-TEL-FIIGNNSVTTIESAKEMFSYGADMVS 218 (233)
T ss_pred EEEEEcCCcCcCHHHHHHHHHHhCCCEEEECcCCCCCCCcH-HHHHHhc-CCC-EEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 7774433 24445667788999998877643210 1122 4444444 222 22333333677777777654 89887
Q ss_pred E
Q 023494 193 I 193 (281)
Q Consensus 193 v 193 (281)
+
T Consensus 219 i 219 (233)
T cd02911 219 V 219 (233)
T ss_pred E
Confidence 6
|
This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown. |
| >KOG4013 consensus Predicted Cu2+ homeostasis protein CutC [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.39 E-value=0.31 Score=43.06 Aligned_cols=155 Identities=20% Similarity=0.220 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC-hh-------------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE-PE-------------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d-p~-------------~~i~~~ 134 (281)
+++.+ ..++++|+|.|++= .-+|+.+|.+.| ++-++....+|+-+ |+.. .+ .-++.+
T Consensus 18 s~eSA-~nAe~GGAdRiElCSaL~eGGlTPSvG~----l~~~k~~~~iP~yc--MiRpR~GDFvYsd~Em~a~~~Dv~ll 90 (255)
T KOG4013|consen 18 SLESA-ENAEAGGADRIELCSALQEGGLTPSVGF----LSILKYKYPIPLYC--MIRPRAGDFVYSDDEMAANMEDVELL 90 (255)
T ss_pred hHHHH-HhHhhcCccHhHHhhhhccCCCCCcchh----hhhhhcccccceEE--EEecCCCCcccchHHHHHHHHHHHHH
Confidence 44443 45677899987763 557888886644 56566544477776 5521 11 135567
Q ss_pred HHcCCCEEEEcccccccccHH--HHHHHHHHc-CCcEE--EEECCCCCH-HHHHHhhccCCEEEEEeecCCC-----CCC
Q 023494 135 IKAGADIVSVHCEQSSTIHLH--RTLNQIKDL-GAKAG--VVLNPATSL-SAIECVLDVVDLVLIMSVNPGF-----GGQ 203 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~--~~l~~ik~~-G~k~G--lai~p~t~i-e~~~~~l~~vD~IlvmsV~pG~-----~GQ 203 (281)
.++|||+..|..-.. .-++. .+...+.-. +..+- -++....+. ..++..+. +-|| .|
T Consensus 91 k~~GAdGfVFGaLt~-dgsid~~~C~si~~~~rplPVTFHRAfD~~~D~k~~lE~~l~----------~lGF~rvLtSG- 158 (255)
T KOG4013|consen 91 KKAGADGFVFGALTS-DGSIDRTSCQSIIETARPLPVTFHRAFDVAYDWKTCLEDALL----------DLGFKRVLTSG- 158 (255)
T ss_pred HHcCCCceEEeecCC-CCCcCHHHHHHHHHhcCCCceeeeeehhhhcCHHHHHHHHHH----------HhhHHHHhhcC-
Confidence 889999999997652 22222 122222211 22221 133222111 12221111 2243 34
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE 245 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~ 245 (281)
+.|..++-+--+++++..+..++.+.-.+|||..|+..+++
T Consensus 159 -~~psAldGv~~i~~lie~hkg~i~VmpG~Gi~~sNl~~ile 199 (255)
T KOG4013|consen 159 -QEPSALDGVYIIRELIELHKGKIDVMPGCGINSSNLANILE 199 (255)
T ss_pred -CCcccccchHHHHHHHHHhcCCEEEecCCCcchHHHHHHHh
Confidence 45666666666666665554456677799999988887765
|
|
| >PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate | Back alignment and domain information |
|---|
Probab=93.37 E-value=2.3 Score=39.68 Aligned_cols=191 Identities=15% Similarity=0.188 Sum_probs=116.2
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC--cccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDG--RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG--~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..=+.|+..+.-.++.+++.+...| +.+--+ .|.+.-.+ ...++.+.+..+.|+-+||==......+..++++|.
T Consensus 20 ~AfN~~n~e~~~avi~AAe~~~sPvI-lq~~~~~~~~~~~~~~-~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~Gf 97 (287)
T PF01116_consen 20 PAFNVYNLETARAVIEAAEELNSPVI-LQISPSEVKYMGLEYL-AAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGF 97 (287)
T ss_dssp EEEE-SSHHHHHHHHHHHHHTTS-EE-EEEEHHHHHHHHHHHH-HHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTS
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEE-EEcchhhhhhhhHHHH-HHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCc
Confidence 33333455555566777788777764 332222 12211111 224555555567999999966555567889999999
Q ss_pred CEEEEcccccccc----cHHHHHHHHHHcCCcEEEEEC----------C-------CCCHHHHHHhhc--cCCEEEEE--
Q 023494 140 DIVSVHCEQSSTI----HLHRTLNQIKDLGAKAGVVLN----------P-------ATSLSAIECVLD--VVDLVLIM-- 194 (281)
Q Consensus 140 d~Itvh~Ea~~~~----~i~~~l~~ik~~G~k~Glai~----------p-------~t~ie~~~~~l~--~vD~Ilvm-- 194 (281)
+.|-+=.-..+.+ .-.++.+.++.+|+-+-.-|. . -|..+...++.+ .+|.+.+-
T Consensus 98 tSVM~DgS~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~~TgvD~LAvaiG 177 (287)
T PF01116_consen 98 TSVMIDGSALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVEETGVDALAVAIG 177 (287)
T ss_dssp SEEEEE-TTS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHHHHTTSEEEE-SS
T ss_pred ccccccCCcCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHHHhCCCEEEEecC
Confidence 9887765433221 245777888898876633221 1 156677777775 48987652
Q ss_pred eecCCCCCCccchh-HHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccC
Q 023494 195 SVNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 195 sV~pG~~GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
++| |...+...|. -+++|+++++.++ ++++..=||=+ .|.++++++.|+.-+=+|+.+..
T Consensus 178 t~H-G~y~~~~~p~Ld~~~L~~I~~~~~----~iPLVlHGgSG~~~e~~~~ai~~Gi~KiNi~T~~~~ 240 (287)
T PF01116_consen 178 TAH-GMYKGGKKPKLDFDRLKEIREAVP----DIPLVLHGGSGLPDEQIRKAIKNGISKINIGTELRR 240 (287)
T ss_dssp SBS-SSBSSSSSTC--HHHHHHHHHHHH----TSEEEESSCTTS-HHHHHHHHHTTEEEEEESHHHHH
T ss_pred ccc-cccCCCCCcccCHHHHHHHHHhcC----CCCEEEECCCCCCHHHHHHHHHcCceEEEEehHHHH
Confidence 233 2211101333 3778888888873 37898888655 77999999999999999998763
|
There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B .... |
| >COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.36 E-value=4.8 Score=36.33 Aligned_cols=190 Identities=16% Similarity=0.225 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc---
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS--- 149 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~--- 149 (281)
++...++.+|+|-|-+- -=|.- -.-..-+..||+..+.++..-+-+.+ ++++.+.+...+.||+-.|..
T Consensus 26 ~aa~iA~~aGAdgITvH-----lReDrRHI~d~Dv~~lr~~~~~~~NlE~a~te--Eml~ia~~~kP~~vtLVPe~r~ev 98 (243)
T COG0854 26 EAAFIAEQAGADGITVH-----LREDRRHIQDRDVRILRALIDTRFNLEMAPTE--EMLAIALKTKPHQVTLVPEKREEV 98 (243)
T ss_pred HHHHHHHHcCCCceEec-----cCccccccchhhHHHHHHHcccceecccCchH--HHHHHHHhcCCCeEEeCCCchhhc
Confidence 44556777898875442 11211 12233456666665556554443333 357777889999999987742
Q ss_pred c----------cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh-hccCCEEEEEeecCCCCCCccc-------hhHHH
Q 023494 150 S----------TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFI-------ESQVK 211 (281)
Q Consensus 150 ~----------~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ~f~-------~~~l~ 211 (281)
+ .+-+.+.++.+++.|+++.+.+.|+ .+.++.- .-.+|+|-+.| |..+..+. ..-++
T Consensus 99 TTegGlD~~~~~~~l~~~v~~L~~~GirVSLFiD~d--~~qi~aa~~~gA~~IELhT---G~Ya~~~~~~~~~~~~~el~ 173 (243)
T COG0854 99 TTEGGLDVAGQLDKLRDAVRRLKNAGIRVSLFIDPD--PEQIEAAAEVGAPRIELHT---GPYADAHDAAEQARADAELE 173 (243)
T ss_pred ccccchhhhhhhhhHHHHHHHHHhCCCeEEEEeCCC--HHHHHHHHHhCCCEEEEec---ccccccCChHHHHHHHHHHH
Confidence 0 1126788999999999999999875 2223332 22589997754 44433333 11355
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCC---CCHHHHHHHHHHhcCcC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGA---KDYAEAIKGIKTSKRPQ 277 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a---~dp~~~~~~l~~~~~~~ 277 (281)
+|++..++-.+ .++.+...=|++..|++.+.+.- ..=+-+|-+|... --.++++.+|+..++.+
T Consensus 174 rl~~~a~~A~~--lGL~VnAGHgLty~Nv~~~a~~~~i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~~ 241 (243)
T COG0854 174 RLAKAAKLAAE--LGLKVNAGHGLTYHNVKPLAAIPPLAELNIGHSIIARAVFVGLEEAVREMKRLMKRA 241 (243)
T ss_pred HHHHHHHHHHH--cCceEecCCCccccchHHHhcCCcceeecccHHHHHHHHHhhHHHHHHHHHHHHHhc
Confidence 66665555443 45678888899999999886653 3335567666642 34567888888877654
|
|
| >COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=93.23 E-value=2.3 Score=40.53 Aligned_cols=195 Identities=19% Similarity=0.200 Sum_probs=109.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcc-cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc-
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRF-VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS- 149 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~f-vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~- 149 (281)
+-++-+.+++.|+--+ ..+.-|.= -..+..=.++++.+++.++.++-+-+=..+ ....++++++|+|++.--.|+.
T Consensus 89 Ile~Ak~ak~~Ga~r~-c~~aagr~~~~~~~~i~~~v~~Vk~~~~le~c~slG~l~-~eq~~~L~~aGvd~ynhNLeTs~ 166 (335)
T COG0502 89 ILEAAKKAKAAGATRF-CMGAAGRGPGRDMEEVVEAIKAVKEELGLEVCASLGMLT-EEQAEKLADAGVDRYNHNLETSP 166 (335)
T ss_pred HHHHHHHHHHcCCceE-EEEEeccCCCccHHHHHHHHHHHHHhcCcHHhhccCCCC-HHHHHHHHHcChhheecccccCH
Confidence 3344556677785332 22333321 011111233455555455555444333333 3467889999999987755542
Q ss_pred ----------ccccHHHHHHHHHHcCCcEE--EEECCCCCHHH-H---HHhhc--cCCEEEEEeecC--CCC--CCc-cc
Q 023494 150 ----------STIHLHRTLNQIKDLGAKAG--VVLNPATSLSA-I---ECVLD--VVDLVLIMSVNP--GFG--GQS-FI 206 (281)
Q Consensus 150 ----------~~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~-~---~~~l~--~vD~IlvmsV~p--G~~--GQ~-f~ 206 (281)
+-++-..+++.+|+.|++++ ..+..+...++ + ..+.. .+|-|=++..+| |.- .++ ..
T Consensus 167 ~~y~~I~tt~t~edR~~tl~~vk~~Gi~vcsGgI~GlGEs~eDri~~l~~L~~l~~pdsVPIn~l~P~~GTPle~~~~~~ 246 (335)
T COG0502 167 EFYENIITTRTYEDRLNTLENVREAGIEVCSGGIVGLGETVEDRAELLLELANLPTPDSVPINFLNPIPGTPLENAKPLD 246 (335)
T ss_pred HHHcccCCCCCHHHHHHHHHHHHHcCCccccceEecCCCCHHHHHHHHHHHHhCCCCCeeeeeeecCCCCCccccCCCCC
Confidence 12234578889999999874 45554544432 3 33322 278888877765 542 122 22
Q ss_pred h-hHHHHHHHHHHHhhhcCCCCeEEEecCCC---hhcHHHHHHcCCcEEEEcc-cccCC-CCHHHHHHHHHH
Q 023494 207 E-SQVKKISDLRRMCLEKGVNPWIEVDGGVG---PKNAYKVIEAGANALVAGS-AVFGA-KDYAEAIKGIKT 272 (281)
Q Consensus 207 ~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~---~e~i~~~~~aGAD~~VvGS-aIf~a-~dp~~~~~~l~~ 272 (281)
+ +.++-|.-.|=++++ ..|-+.||.. ++....+..+|||.+.+|- .++.. .+.++-.+-+++
T Consensus 247 ~~e~lk~IA~~Ri~~P~----~~Ir~s~gr~~~~~~~q~~~~~aGansi~~g~~~ltt~~~~~e~D~~~l~~ 314 (335)
T COG0502 247 PFEFLKTIAVARIIMPK----SMIRLSAGRETMLPELQALAFMAGANSIFVGDKYLTTPGPDEDKDLELLKD 314 (335)
T ss_pred HHHHHHHHHHHHHHCCc----ceeEccCCcccccHHHHHHHHHhccceeeecceEeecCCCCchhHHHHHHH
Confidence 2 235556666666654 4555667754 6667788999999999997 76643 444444444444
|
|
| >PRK11613 folP dihydropteroate synthase; Provisional | Back alignment and domain information |
|---|
Probab=93.22 E-value=3.2 Score=38.64 Aligned_cols=96 Identities=20% Similarity=0.226 Sum_probs=50.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccccc---CC------HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IG------PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~---~G------~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|+....+..+.+.+.|+|+| ||==-..-|... .- ..+|+.|++..+.++-+ =+.+|. .++.+.++|
T Consensus 36 ~~~~a~~~a~~~~~~GAdII--DIGgeSTrPg~~~v~~eeE~~Rv~pvI~~l~~~~~~~ISI--DT~~~~-va~~AL~~G 110 (282)
T PRK11613 36 SLIDAVKHANLMINAGATII--DVGGESTRPGAAEVSVEEELDRVIPVVEAIAQRFEVWISV--DTSKPE-VIRESAKAG 110 (282)
T ss_pred CHHHHHHHHHHHHHCCCcEE--EECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEE--ECCCHH-HHHHHHHcC
Confidence 44444455556667899876 432111113221 11 12455666443455444 234544 677888999
Q ss_pred CCEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 139 Ad~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
||+|- +.... +. +.++.++++|..+.+.-+
T Consensus 111 adiINDI~g~~----d~-~~~~~~a~~~~~vVlmh~ 141 (282)
T PRK11613 111 AHIINDIRSLS----EP-GALEAAAETGLPVCLMHM 141 (282)
T ss_pred CCEEEECCCCC----CH-HHHHHHHHcCCCEEEEcC
Confidence 99881 11211 11 345667888877776543
|
|
| >PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase | Back alignment and domain information |
|---|
Probab=93.21 E-value=0.8 Score=44.24 Aligned_cols=96 Identities=13% Similarity=0.234 Sum_probs=62.9
Q ss_pred HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 156 RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
+.++++|+. +..+.+ ..-...+..+...+ .+|.|.+ +-+ |-......+.+++-|.++++.+. .+++|.+||
T Consensus 214 ~di~wlr~~~~~Piiv--KgV~~~~dA~~a~~~Gvd~I~V-snh-GGrqld~~~~t~~~L~ei~~av~---~~~~vi~dG 286 (367)
T PLN02493 214 KDVQWLQTITKLPILV--KGVLTGEDARIAIQAGAAGIIV-SNH-GARQLDYVPATISALEEVVKATQ---GRIPVFLDG 286 (367)
T ss_pred HHHHHHHhccCCCEEe--ecCCCHHHHHHHHHcCCCEEEE-CCC-CCCCCCCchhHHHHHHHHHHHhC---CCCeEEEeC
Confidence 447777775 333332 22234566666555 4899876 223 22222345667777777766553 247899999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
||. -..+-+.+..|||.+-+|+.+.
T Consensus 287 GIr~G~Dv~KALALGA~aV~iGr~~l 312 (367)
T PLN02493 287 GVRRGTDVFKALALGASGIFIGRPVV 312 (367)
T ss_pred CcCcHHHHHHHHHcCCCEEEEcHHHH
Confidence 999 4477788999999999998865
|
|
| >TIGR03326 rubisco_III ribulose bisphosphate carboxylase, type III | Back alignment and domain information |
|---|
Probab=93.15 E-value=1.5 Score=42.92 Aligned_cols=94 Identities=17% Similarity=0.243 Sum_probs=60.1
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+-.+..|+ |..-+.|++....|-.+.++=.......+|-|- +|...+.+..+.+.+.|++.+.+|++
T Consensus 175 D~IKDDE~l~~q~-~~p~~eRv~~~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~------ 246 (412)
T TIGR03326 175 DLLKDDENLTSQP-FNRFEERVEKLYKVRDKVEAETGERKEYLANIT-APVREMERRAELVADLGGQYVMVDVV------ 246 (412)
T ss_pred ceeecCCCCCCCC-CccHHHHHHHHHHHHHHHHHHhCCcceEEEEec-CCHHHHHHHHHHHHHhCCCeEEEEee------
Confidence 4444444554333 333344556666655444443444556677776 66788888889999999999888743
Q ss_pred cccCCHHHHHHcCc---CCCCCeeEEE
Q 023494 99 NITIGPLVVDALRP---VTDLPLDVHL 122 (281)
Q Consensus 99 n~~~G~~~I~~ir~---~t~~~idaHL 122 (281)
..|...++.|++ ..+.++.+|=
T Consensus 247 --~~G~~~l~~l~~~~~~~~l~ih~Hr 271 (412)
T TIGR03326 247 --VCGWSALQYIRELTEDLGLAIHAHR 271 (412)
T ss_pred --ccchHHHHHHHHhhccCCeEEEEcC
Confidence 346778888876 3467777763
|
Members of this protein family are the archaeal, single chain, type III form of ribulose bisphosphate carboxylase, or RuBisCO. Members act is a three-step pathway for conversion of the sugar moiety of AMP to two molecules of 3-phosphoglycerate. Many of these species use ADP-dependent sugar kinases, which form AMP, for glycolysis. |
| >PRK05904 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=3.1 Score=39.76 Aligned_cols=130 Identities=10% Similarity=0.104 Sum_probs=78.2
Q ss_pred cChh----hHHHHHHHcCCCEEEEcccccc------------cccHHHHHHHHHHcCCc-EEEEEC---CCCCHHHHHHh
Q 023494 125 VEPE----QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECV 184 (281)
Q Consensus 125 ~dp~----~~i~~~~~aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k-~Glai~---p~t~ie~~~~~ 184 (281)
.||. +.++.+.++|.+.|++..++.+ .+++.+.++.+++.|.. +.+.+. |+...+.+++-
T Consensus 96 ~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~~~~~~~~~ai~~lr~~G~~~v~~dlI~GlPgqt~e~~~~t 175 (353)
T PRK05904 96 CNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRTHTIQDSKEAINLLHKNGIYNISCDFLYCLPILKLKDLDEV 175 (353)
T ss_pred eccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeecCCCCCHHHHHHH
Confidence 4664 3578889999999999988641 12366788888999976 766543 55555555444
Q ss_pred hcc-----CCEEEEE--eecCCCC--CC--ccch-hHHHHHHHHHHHhhhcCCCC-eEE---E-ecCCChhcHHHHHHcC
Q 023494 185 LDV-----VDLVLIM--SVNPGFG--GQ--SFIE-SQVKKISDLRRMCLEKGVNP-WIE---V-DGGVGPKNAYKVIEAG 247 (281)
Q Consensus 185 l~~-----vD~Ilvm--sV~pG~~--GQ--~f~~-~~l~kI~~lr~l~~~~~~~~-~I~---V-DGGI~~e~i~~~~~aG 247 (281)
++. +|.|.+. +++||.. .+ .+.+ ...++...+++.+.+.|+.- .|. - .|--...|..- . .+
T Consensus 176 l~~~~~l~p~~is~y~L~~~~gT~l~~~~~~~~~~~~~~~~~~~~~~L~~~Gy~~yeisnfa~~~~~~~~hn~~y-w-~~ 253 (353)
T PRK05904 176 FNFILKHKINHISFYSLEIKEGSILKKYHYTIDEDKEAEQLNYIKAKFNKLNYKRYEVSNWTNNFKYISKHNLAY-W-RT 253 (353)
T ss_pred HHHHHhcCCCEEEEEeeEecCCChHhhcCCCCChHHHHHHHHHHHHHHHHcCCcEEechhhcCCCCccccchHhH-h-CC
Confidence 332 6776554 5678842 21 2232 34667778888887766531 121 1 23333444433 2 46
Q ss_pred CcEEEEccc
Q 023494 248 ANALVAGSA 256 (281)
Q Consensus 248 AD~~VvGSa 256 (281)
.|.+=+|.+
T Consensus 254 ~~ylg~G~g 262 (353)
T PRK05904 254 KDWAAIGWG 262 (353)
T ss_pred CCEEEEcCC
Confidence 688877743
|
|
| >TIGR01235 pyruv_carbox pyruvate carboxylase | Back alignment and domain information |
|---|
Probab=92.96 E-value=2.3 Score=46.95 Aligned_cols=183 Identities=15% Similarity=0.151 Sum_probs=108.0
Q ss_pred eEEEeccCccCHHHHHH---HHHHcCCCeEEEEeeeC-cccccc---cC-CHHHHHHcCcC-CCCCeeEEEEecC-----
Q 023494 61 SPSILSANFAKLGEQVK---AVELAGCDWIHVDVMDG-RFVPNI---TI-GPLVVDALRPV-TDLPLDVHLMIVE----- 126 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~---~l~~~G~d~iHiDImDG-~fvpn~---~~-G~~~I~~ir~~-t~~~idaHLmv~d----- 126 (281)
..|+++-=+ +..+.+. .+.+.-+.+..+.+-=| +|=-.+ .+ -.+-++.+|+. ++.++..-|-=.|
T Consensus 542 hQSl~atr~-rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl~EdPwerl~~~r~~~pn~~~qml~Rg~n~vgy~ 620 (1143)
T TIGR01235 542 HQSLLATRV-RTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFLHEDPWERLEDLRKGVPNILFQMLLRGANGVGYT 620 (1143)
T ss_pred hhhhhhhCC-CHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHhcCCHHHHHHHHHHhCCCCceeeeeccccccCcc
Confidence 468885433 4444443 33342234445554444 222122 22 23457777775 7777765443233
Q ss_pred --hh----hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC-------C---CHHHHHHhhc----
Q 023494 127 --PE----QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-------T---SLSAIECVLD---- 186 (281)
Q Consensus 127 --p~----~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-------t---~ie~~~~~l~---- 186 (281)
|. .|++.+++.|.|.+-+-..-...+++...++++|+.|..+..+|+-. . .++.+.++.+
T Consensus 621 ~ypd~vv~~f~~~~~~~GidifrifD~lN~~~n~~~~~~~~~~~g~~~~~~i~yt~~~~d~~~~~~~l~y~~~~ak~l~~ 700 (1143)
T TIGR01235 621 NYPDNVVKYFVKQAAQGGIDIFRVFDSLNWVENMRVGMDAVAEAGKVVEAAICYTGDILDPARPKYDLKYYTNLAVELEK 700 (1143)
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEECccCcCHHHHHHHHHHHHHcCCEEEEEEEEeccCCCcCCCCCCHHHHHHHHHHHHH
Confidence 33 35677788999988775332135678899999999999886655422 2 3444444332
Q ss_pred -cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 187 -VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 187 -~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.+|.|.+ .-..|......+.+.++.+|+.+ +++|.+ |-|....|.-..+++|||++=+
T Consensus 701 ~Gad~I~i----kDt~Gll~P~~~~~Lv~~lk~~~-----~~pi~~H~Hdt~Gla~an~laA~eaGad~vD~ 763 (1143)
T TIGR01235 701 AGAHILGI----KDMAGLLKPAAAKLLIKALREKT-----DLPIHFHTHDTSGIAVASMLAAVEAGVDVVDV 763 (1143)
T ss_pred cCCCEEEE----CCCcCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCCcHHHHHHHHHHhCCCEEEe
Confidence 2676654 23345433344456667776654 356776 6788888999999999998743
|
This enzyme plays a role in gluconeogensis but not glycolysis. |
| >TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family | Back alignment and domain information |
|---|
Probab=92.95 E-value=3.9 Score=37.65 Aligned_cols=157 Identities=14% Similarity=0.148 Sum_probs=88.6
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----cCCHHHHHHcCcC-CCCC--eeEEEEecCh--hh-
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----TIGPLVVDALRPV-TDLP--LDVHLMIVEP--EQ- 129 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~~G~~~I~~ir~~-t~~~--idaHLmv~dp--~~- 129 (281)
+---+|.-|. ...+..+...|+|+|.+++.=|.++-.. +-..++++.-|.. .+.. .|+|.+-.-| .+
T Consensus 82 ~GvnvL~nd~---~aal~iA~a~ga~FIRv~~~~g~~~~d~G~~~~~a~e~~r~r~~l~~~v~i~adV~~kh~~~l~~~~ 158 (257)
T TIGR00259 82 LGINVLRNDA---VAALAIAMAVGAKFIRVNVLTGVYASDQGIIEGNAGELIRYKKLLGSEVKILADIVVKHAVHLGNRD 158 (257)
T ss_pred eeeeeecCCC---HHHHHHHHHhCCCEEEEccEeeeEecccccccccHHHHHHHHHHcCCCcEEEeceeecccCcCCCCC
Confidence 3444444343 4567888889999999987666655433 1122333332221 3444 4444444334 11
Q ss_pred ---HHHHHHHc-CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCcc
Q 023494 130 ---RVPDFIKA-GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 130 ---~i~~~~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f 205 (281)
..+..... ++|.+++-........-.+.++.+|+.-...=+.+.-+-..+.+.++++.+|-+.+.|-.- ..|.-.
T Consensus 159 ~~e~a~~~~~~~~aDavivtG~~TG~~~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~K-~~G~~~ 237 (257)
T TIGR00259 159 LESIALDTVERGLADAVILSGKTTGTEVDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTIK-KDGVFN 237 (257)
T ss_pred HHHHHHHHHHhcCCCEEEECcCCCCCCCCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCcc-cCCccC
Confidence 22233333 4999999987532223345677777633333467777777788888888899998865432 233322
Q ss_pred chhHHHHHHHHHHHh
Q 023494 206 IESQVKKISDLRRMC 220 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~ 220 (281)
.+...+|++++-+..
T Consensus 238 n~~D~~rV~~Fm~~v 252 (257)
T TIGR00259 238 NFVDQARVSQFVEKV 252 (257)
T ss_pred CCcCHHHHHHHHHHH
Confidence 345566777665544
|
Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis. |
| >PLN02858 fructose-bisphosphate aldolase | Back alignment and domain information |
|---|
Probab=92.89 E-value=2.4 Score=47.60 Aligned_cols=191 Identities=17% Similarity=0.153 Sum_probs=116.3
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..=+.|+..+.-.++.+++.+...| +-+-.++ |.+ +.+..- ++.+.+....|+-+||==....+++..++++|.
T Consensus 1117 ~afn~~n~e~~~avi~aAe~~~sPvI-l~~~~~~~~~~~-~~~~~~-~~~~a~~~~vpV~lHLDHg~~~~~i~~ai~~Gf 1193 (1378)
T PLN02858 1117 GAFNVYNLEGIEAVVAAAEAEKSPAI-LQVHPGALKQGG-IPLVSC-CIAAAEQASVPITVHFDHGTSKHELLEALELGF 1193 (1378)
T ss_pred EEEEeCCHHHHHHHHHHHHHhCCCEE-EECCccHHhhcC-HHHHHH-HHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCC
Confidence 33333455455566778888887765 4444442 122 112222 222233356899999965544567889999998
Q ss_pred CEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------EC----CCCCHHHHHHhhcc--CCEEEE--Ee
Q 023494 140 DIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------LN----PATSLSAIECVLDV--VDLVLI--MS 195 (281)
Q Consensus 140 d~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i~----p~t~ie~~~~~l~~--vD~Ilv--ms 195 (281)
+.|-+=.-..+. ..-+++++.++.+|+-+ |-. .. .-|+.+..+++.+. +|.+.+ .+
T Consensus 1194 ~SVM~DgS~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a~~Fv~~TgvD~LAvaiGt 1273 (1378)
T PLN02858 1194 DSVMVDGSHLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQAKEFIDETGIDALAVCIGN 1273 (1378)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHHHHHHHhcCCcEEeeeccc
Confidence 877765433221 22457777888888654 211 00 13566778888774 888654 44
Q ss_pred ecCCCCCCccch-hHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccccC
Q 023494 196 VNPGFGGQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 196 V~pG~~GQ~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+| |..... .| --+++|+++++.+.. .++++..=|| +..+.++++++.|+.-|=+++.+..
T Consensus 1274 ~H-G~Y~~~-~p~l~~~~l~~i~~~~~~--~~vpLVlHGgSG~~~~~~~~ai~~Gi~KiNi~T~~~~ 1336 (1378)
T PLN02858 1274 VH-GKYPAS-GPNLRLDLLKELRALSSK--KGVLLVLHGASGLPESLIKECIENGVRKFNVNTEVRT 1336 (1378)
T ss_pred cc-ccCCCC-CCccCHHHHHHHHHHhcC--CCCcEEEeCCCCCCHHHHHHHHHcCCeEEEeCHHHHH
Confidence 55 322110 12 236677777777632 2477877665 5588999999999999999998853
|
|
| >TIGR00559 pdxJ pyridoxine 5'-phosphate synthase | Back alignment and domain information |
|---|
Probab=92.86 E-value=1.8 Score=39.33 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=73.8
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-- 200 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-- 200 (281)
||......+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-..|.. +.+.-.++ .+|.|.+..-.++-
T Consensus 22 d~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~l~~~~~~~lNlE~a~~~--emi~ia~~vkP~~vtLVPEkr~ElT 98 (237)
T TIGR00559 22 DPLRAALIAEQAGADGITVHLRE-DRRHIQDRDVYDLKEALTTPFNIEMAPTE--EMIRIAEEIKPEQVTLVPEARDEVT 98 (237)
T ss_pred CHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCCH--HHHHHHHHcCCCEEEECCCCCCCcc
Confidence 44555667889999999999764 223322 333344432 345555555432 22222222 47999876544431
Q ss_pred --CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 201 --GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 --~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|-.+ ....++|+.+.+.+.+.|..+-+=+|.- ++.++...+.|||.+=+=+.=|
T Consensus 99 TegGldv-~~~~~~l~~~i~~l~~~gI~VSLFiDP~--~~qi~~A~~~GAd~VELhTG~Y 155 (237)
T TIGR00559 99 TEGGLDV-ARLKDKLCELVKRFHAAGIEVSLFIDAD--KDQISAAAEVGADRIEIHTGPY 155 (237)
T ss_pred CCcCchh-hhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhh
Confidence 23222 3335667776666666554333445654 7789999999999987765544
|
PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate. |
| >TIGR00423 radical SAM domain protein, CofH subfamily | Back alignment and domain information |
|---|
Probab=92.84 E-value=1.8 Score=40.43 Aligned_cols=183 Identities=19% Similarity=0.184 Sum_probs=95.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccc-ccccCCHHHHHHcCcCCCCCeeEEEEec------------ChhhHHHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFV-PNITIGPLVVDALRPVTDLPLDVHLMIV------------EPEQRVPD 133 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fv-pn~~~G~~~I~~ir~~t~~~idaHLmv~------------dp~~~i~~ 133 (281)
.+..++.+.++.+.+.|++.+++ .+|... .+...-.++++.||+... .+.++-++. ...+.++.
T Consensus 36 ls~eeI~~~~~~~~~~G~~~i~l--~gg~~~~~~~~~~~~i~~~Ik~~~~-~i~~~~~s~~e~~~~~~~~g~~~~e~l~~ 112 (309)
T TIGR00423 36 LSLEEILEKVKEAVAKGATEVCI--QGGLNPQLDIEYYEELFRAIKQEFP-DVHIHAFSPMEVYFLAKNEGLSIEEVLKR 112 (309)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--ecCCCCCCCHHHHHHHHHHHHHHCC-CceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence 45567777777777889988766 455321 122333567777776521 233332220 12456888
Q ss_pred HHHcCCCEEE-Eccccc-------------ccccHHHHHHHHHHcCCcEE--EEEC-CCCCHHHHHHh--hcc--CCEEE
Q 023494 134 FIKAGADIVS-VHCEQS-------------STIHLHRTLNQIKDLGAKAG--VVLN-PATSLSAIECV--LDV--VDLVL 192 (281)
Q Consensus 134 ~~~aGAd~It-vh~Ea~-------------~~~~i~~~l~~ik~~G~k~G--lai~-p~t~ie~~~~~--l~~--vD~Il 192 (281)
+.++|.+.+. ...|.. +.++..++++.+++.|+++. +.+. |.|.-+.++-+ +.. .++..
T Consensus 113 LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~~l~~i~~a~~~Gi~~~s~~iiG~~Et~ed~~~~l~~lr~l~~~~~~ 192 (309)
T TIGR00423 113 LKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDEWLEVIKTAHRLGIPTTATMMFGHVENPEHRVEHLLRIRKIQEKTGG 192 (309)
T ss_pred HHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEecCCCCHHHHHHHHHHHHhhchhhCC
Confidence 9999999885 343321 12234578889999999875 4454 34433333222 111 23221
Q ss_pred E-----EeecC-CC---CCC---cc-chhHHHHHHHHHHHhhhcCCCCe-EEEe-cCCChhcHHHHHHcCCcEEEEcccc
Q 023494 193 I-----MSVNP-GF---GGQ---SF-IESQVKKISDLRRMCLEKGVNPW-IEVD-GGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 193 v-----msV~p-G~---~GQ---~f-~~~~l~kI~~lr~l~~~~~~~~~-I~VD-GGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
+ +...| |. .++ .. ..+.+..|.-.|-+++ +++ |++- .-++++.....+.+|||.+ |+.+
T Consensus 193 f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp----~~~~i~a~~~~l~~~~~~~~l~~Gand~--~gt~ 266 (309)
T TIGR00423 193 FTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLN----NIRNIQASWVKLGLKLAQVALEFGANDL--GGTL 266 (309)
T ss_pred eeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcC----CCccceecchhcCHHHHHHHHhCCCccC--Cccc
Confidence 1 11112 22 122 11 1334555555565554 222 3320 1224555678899999965 4344
Q ss_pred c
Q 023494 258 F 258 (281)
Q Consensus 258 f 258 (281)
.
T Consensus 267 ~ 267 (309)
T TIGR00423 267 M 267 (309)
T ss_pred c
Confidence 3
|
This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family. |
| >PRK05265 pyridoxine 5'-phosphate synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=1.8 Score=39.32 Aligned_cols=127 Identities=17% Similarity=0.268 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-- 200 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-- 200 (281)
||.+....+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-..|.. +.+.-.++ .+|.|.+..-.+.-
T Consensus 25 d~v~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~~~--em~~ia~~~kP~~vtLVPE~r~E~T 101 (239)
T PRK05265 25 DPVRAALIAEQAGADGITVHLRE-DRRHIRDRDVRLLRETLKTELNLEMAATE--EMLDIALEVKPHQVTLVPEKREELT 101 (239)
T ss_pred CHHHHHHHHHHcCCCEEEecCCC-CcccCCHHHHHHHHHhcCCCEEeccCCCH--HHHHHHHHCCCCEEEECCCCCCCcc
Confidence 45556677889999999999763 222322 233333332 335555555432 22222222 47999876444321
Q ss_pred --CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 201 --GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 --~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|-.+ ....++|+.+.+.+.+.|..+-+=+| =+++.+....+.|||.+=+=+.=|
T Consensus 102 TegGldv-~~~~~~l~~~i~~L~~~gIrVSLFid--P~~~qi~~A~~~GAd~VELhTG~y 158 (239)
T PRK05265 102 TEGGLDV-AGQFDKLKPAIARLKDAGIRVSLFID--PDPEQIEAAAEVGADRIELHTGPY 158 (239)
T ss_pred CCccchh-hcCHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhh
Confidence 23222 33456677666666665543444466 457789999999999987765544
|
|
| >cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain | Back alignment and domain information |
|---|
Probab=92.76 E-value=1 Score=41.99 Aligned_cols=119 Identities=20% Similarity=0.225 Sum_probs=68.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcc-----cc--c-------------ccCCHHHHHHcCcCC--CCCeeEEEEec------
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRF-----VP--N-------------ITIGPLVVDALRPVT--DLPLDVHLMIV------ 125 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~f-----vp--n-------------~~~G~~~I~~ir~~t--~~~idaHLmv~------ 125 (281)
++.+.+.++|.|.|+|-.-.|.. .| | ..|-.++++++|+.. +.++-+.+=..
T Consensus 145 ~aA~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~~~~g 224 (327)
T cd02803 145 AAARRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDFVPGG 224 (327)
T ss_pred HHHHHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhccCCCC
Confidence 44456678999998876544321 22 1 122367888998864 55666655432
Q ss_pred -Ch---hhHHHHHHHcCCCEEEEccccc--cc----------ccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc-
Q 023494 126 -EP---EQRVPDFIKAGADIVSVHCEQS--ST----------IHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 126 -dp---~~~i~~~~~aGAd~Itvh~Ea~--~~----------~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~- 187 (281)
++ .++++.+.++|+|+++++.-.. .. ..-.+.++.+++. ++.+ ++..--+..+.+++++..
T Consensus 225 ~~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV-i~~Ggi~t~~~a~~~l~~g 303 (327)
T cd02803 225 LTLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVKIPV-IAVGGIRDPEVAEEILAEG 303 (327)
T ss_pred CCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCCCCE-EEeCCCCCHHHHHHHHHCC
Confidence 12 2346677889999999884321 00 1122455666664 3332 222222446667777664
Q ss_pred -CCEEEE
Q 023494 188 -VDLVLI 193 (281)
Q Consensus 188 -vD~Ilv 193 (281)
+|.|.+
T Consensus 304 ~aD~V~i 310 (327)
T cd02803 304 KADLVAL 310 (327)
T ss_pred CCCeeee
Confidence 898865
|
OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. |
| >cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism | Back alignment and domain information |
|---|
Probab=92.76 E-value=1.8 Score=39.16 Aligned_cols=127 Identities=20% Similarity=0.319 Sum_probs=73.6
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCC--
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGF-- 200 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~-- 200 (281)
||.+....+.++|||+||+|.-. +..|+. +-+..+++. ..+.-+-..|.. +.+.-.++ .+|.|.+..-.+.-
T Consensus 22 dpv~aA~~a~~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~--em~~ia~~~kP~~vtLVPEkr~E~T 98 (234)
T cd00003 22 DPVEAALLAEKAGADGITVHLRE-DRRHIQDRDVRLLRELVRTELNLEMAPTE--EMLEIALEVKPHQVTLVPEKREELT 98 (234)
T ss_pred CHHHHHHHHHHcCCCEEEecCCC-CcCcCCHHHHHHHHHHcCCCEEeccCCCH--HHHHHHHHCCCCEEEECCCCCCCcc
Confidence 55566777889999999999763 223322 233333332 345555555432 22332233 47999875443321
Q ss_pred --CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 201 --GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 201 --~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|-.+ ....++|+.+.+.+.+.|..+-+=+|.- ++.++...+.|||.+=+=+.=|
T Consensus 99 TegGldv-~~~~~~l~~~i~~l~~~gI~VSLFiDPd--~~qi~~A~~~GAd~VELhTG~Y 155 (234)
T cd00003 99 TEGGLDV-AGQAEKLKPIIERLKDAGIRVSLFIDPD--PEQIEAAKEVGADRVELHTGPY 155 (234)
T ss_pred CCccchh-hcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhh
Confidence 23222 3334666666666666554444445654 6789999999999987765544
|
In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed, |
| >PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed | Back alignment and domain information |
|---|
Probab=92.75 E-value=2.2 Score=44.92 Aligned_cols=123 Identities=14% Similarity=0.170 Sum_probs=74.1
Q ss_pred HHHcCCCEEEEccc---------cc-----------c----cccHHHHHHHHHHc---CCcEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCE---------QS-----------S----TIHLHRTLNQIKDL---GAKAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~E---------a~-----------~----~~~i~~~l~~ik~~---G~k~Glai~p~------t~ie~ 180 (281)
+.++|+|+|-+|.- +. + ..-+.++++.+|+. ++.+++=+++. .+.++
T Consensus 560 a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~~~~~~g~~~~~ 639 (765)
T PRK08255 560 AAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAHDWVEGGNTPDD 639 (765)
T ss_pred HHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccccccCCCCCHHH
Confidence 46789999999965 21 0 01255888888874 35678777752 12332
Q ss_pred HHH---hhc--cCCEEEEEeecCCCCC-Cc--cch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-Cc
Q 023494 181 IEC---VLD--VVDLVLIMSVNPGFGG-QS--FIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-AN 249 (281)
Q Consensus 181 ~~~---~l~--~vD~IlvmsV~pG~~G-Q~--f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD 249 (281)
..+ .++ .+|+|-+-+ .+... +. +.+ ...+-.+++|+.. ++++.+-|+|+ ++.+.++++.| +|
T Consensus 640 ~~~~~~~l~~~g~d~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pv~~~G~i~~~~~a~~~l~~g~~D 712 (765)
T PRK08255 640 AVEIARAFKAAGADLIDVSS--GQVSKDEKPVYGRMYQTPFADRIRNEA-----GIATIAVGAISEADHVNSIIAAGRAD 712 (765)
T ss_pred HHHHHHHHHhcCCcEEEeCC--CCCCcCCCCCcCccccHHHHHHHHHHc-----CCEEEEeCCCCCHHHHHHHHHcCCcc
Confidence 222 233 278886632 11111 11 000 1122233444432 46888899996 88999999876 99
Q ss_pred EEEEcccccCCCCH
Q 023494 250 ALVAGSAVFGAKDY 263 (281)
Q Consensus 250 ~~VvGSaIf~a~dp 263 (281)
.+-+|+.+...++.
T Consensus 713 ~v~~gR~~l~dP~~ 726 (765)
T PRK08255 713 LCALARPHLADPAW 726 (765)
T ss_pred eeeEcHHHHhCccH
Confidence 99999999876654
|
|
| >PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised | Back alignment and domain information |
|---|
Probab=92.63 E-value=3.1 Score=37.70 Aligned_cols=132 Identities=15% Similarity=0.063 Sum_probs=79.1
Q ss_pred ceEeEEEecc--CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcC-CCCCeeEEEEec-----
Q 023494 58 IIVSPSILSA--NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPV-TDLPLDVHLMIV----- 125 (281)
Q Consensus 58 ~~i~pSila~--D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~-t~~~idaHLmv~----- 125 (281)
.-+|.-|=-+ ++.....+....-..|+||+-+.+..+ .+.....+. ++.+|.. .+..+.+-++-.
T Consensus 53 ~pvSAtiGDlp~~p~~~~~aa~~~a~~GvdyvKvGl~g~---~~~~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~ 129 (235)
T PF04476_consen 53 KPVSATIGDLPMKPGTASLAALGAAATGVDYVKVGLFGC---KDYDEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVG 129 (235)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHhcCCCEEEEecCCC---CCHHHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhc
Confidence 3466655332 233334333444457999999966543 222222332 3444543 345566666653
Q ss_pred --ChhhHHHHHHHcCCCEEEEcccc---------cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEE
Q 023494 126 --EPEQRVPDFIKAGADIVSVHCEQ---------SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLI 193 (281)
Q Consensus 126 --dp~~~i~~~~~aGAd~Itvh~Ea---------~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilv 193 (281)
+|....+.+.++|++.+-+--.. .+.+++.++++.+|++|+.+|++=+- ..+.+..+.. .+||+-+
T Consensus 130 ~~~p~~l~~~a~~aG~~gvMlDTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~aLAGSL--~~~di~~L~~l~pD~lGf 207 (235)
T PF04476_consen 130 SISPLDLPEIAAEAGFDGVMLDTADKDGGSLFDHLSEEELAEFVAQARAHGLMCALAGSL--RFEDIPRLKRLGPDILGF 207 (235)
T ss_pred CCCHHHHHHHHHHcCCCEEEEecccCCCCchhhcCCHHHHHHHHHHHHHccchhhccccC--ChhHHHHHHhcCCCEEEe
Confidence 35556777899999998775321 13456889999999999999997432 3344444444 4799976
Q ss_pred E
Q 023494 194 M 194 (281)
Q Consensus 194 m 194 (281)
-
T Consensus 208 R 208 (235)
T PF04476_consen 208 R 208 (235)
T ss_pred c
Confidence 4
|
|
| >cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites | Back alignment and domain information |
|---|
Probab=92.62 E-value=5.9 Score=34.93 Aligned_cols=121 Identities=13% Similarity=0.103 Sum_probs=71.5
Q ss_pred EEeccCc-cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 63 SILSANF-AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 63 Sila~D~-~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
.++--|. ...++.++.+.+.|+|.+|+- ++ ...+.++.+++. ++++.. .+.+ ...++.+.+.|+|+
T Consensus 59 ~~i~~~~~~~~~~~~~~~~~~g~d~v~l~--~~-------~~~~~~~~~~~~-~i~~i~--~v~~-~~~~~~~~~~gad~ 125 (236)
T cd04730 59 NLLVPSSNPDFEALLEVALEEGVPVVSFS--FG-------PPAEVVERLKAA-GIKVIP--TVTS-VEEARKAEAAGADA 125 (236)
T ss_pred eEecCCCCcCHHHHHHHHHhCCCCEEEEc--CC-------CCHHHHHHHHHc-CCEEEE--eCCC-HHHHHHHHHcCCCE
Confidence 3443343 467788899999999999872 11 236677777763 444432 3333 34566788899999
Q ss_pred EEEccccc-----cc-ccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeec
Q 023494 142 VSVHCEQS-----ST-IHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN 197 (281)
Q Consensus 142 Itvh~Ea~-----~~-~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~ 197 (281)
+.++.-.. .. ....+.++.+++. ++.+. +..-=++.+.+.+++. .+|.|.+++-.
T Consensus 126 i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~~Pvi-~~GGI~~~~~v~~~l~~GadgV~vgS~l 188 (236)
T cd04730 126 LVAQGAEAGGHRGTFDIGTFALVPEVRDAVDIPVI-AAGGIADGRGIAAALALGADGVQMGTRF 188 (236)
T ss_pred EEEeCcCCCCCCCccccCHHHHHHHHHHHhCCCEE-EECCCCCHHHHHHHHHcCCcEEEEchhh
Confidence 99864210 00 1234577777764 33333 3322234455666554 48999886543
|
NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. |
| >PRK08649 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.53 E-value=0.85 Score=44.03 Aligned_cols=95 Identities=19% Similarity=0.269 Sum_probs=56.0
Q ss_pred ccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEee--cCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSV--NPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV--~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
+.+.+.++.+++.+..+-+-++|....+..+.+.+ .+|+|.+... ...+.+..-.+ ..+.++++. .+++
T Consensus 118 ~l~~~iv~~~~~~~V~v~vr~~~~~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~---~~i~~~ik~-----~~ip 189 (368)
T PRK08649 118 ELITERIAEIRDAGVIVAVSLSPQRAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEP---LNLKEFIYE-----LDVP 189 (368)
T ss_pred HHHHHHHHHHHhCeEEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCH---HHHHHHHHH-----CCCC
Confidence 44678888888876544444554444555555555 3899876421 11222211112 223333222 1467
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcc
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGS 255 (281)
|.+ |+|. .+.+..+.++|||.+.+|.
T Consensus 190 VIa-G~V~t~e~A~~l~~aGAD~V~VG~ 216 (368)
T PRK08649 190 VIV-GGCVTYTTALHLMRTGAAGVLVGI 216 (368)
T ss_pred EEE-eCCCCHHHHHHHHHcCCCEEEECC
Confidence 755 6665 8889999999999999994
|
|
| >TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type | Back alignment and domain information |
|---|
Probab=92.51 E-value=4.3 Score=41.43 Aligned_cols=172 Identities=18% Similarity=0.149 Sum_probs=95.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--cChhhHHHHHHHc--CCC--EEEEccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--VEPEQRVPDFIKA--GAD--IVSVHCE 147 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~dp~~~i~~~~~a--GAd--~Itvh~E 147 (281)
+..+.|.+.|+|.|++ | |+.--.-..+.++++.+..-.+-++.+.+ .+-...++...++ |++ .|++-.-
T Consensus 52 ~ia~~L~~~Gvd~IE~----G-fp~~s~~D~e~v~~i~~~~l~~~~~~i~al~~~~~~did~a~~a~~~~~~~~v~i~~~ 126 (564)
T TIGR00970 52 RYFDLLVRIGFKEIEV----G-FPSASQTDFDFVREIIEQGAIPDDVTIQVLTQSREELIERTFEALSGAKRATVHFYNA 126 (564)
T ss_pred HHHHHHHHcCCCEEEE----e-CCCCCHHHHHHHHHHHHhcCCCCCcEEEEEcCCchhhHHHHHHHhcCCCCCEEEEEEc
Confidence 4445777899998887 4 54321223344555533210112344444 3323346776666 554 5555432
Q ss_pred cc----------c----cccHHHHHHHHHHcCCc--------EEEEECCC----CCHHHHHHhhccC-CE-------EEE
Q 023494 148 QS----------S----TIHLHRTLNQIKDLGAK--------AGVVLNPA----TSLSAIECVLDVV-DL-------VLI 193 (281)
Q Consensus 148 a~----------~----~~~i~~~l~~ik~~G~k--------~Glai~p~----t~ie~~~~~l~~v-D~-------Ilv 193 (281)
++ + .+.+.+.++.+|++|.. .++-+.+. ++.+.+.+++..+ +. +..
T Consensus 127 ~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed~~r~d~~~l~~~~~~a~~ag~~~~~~~~~ 206 (564)
T TIGR00970 127 TSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPESFSDTELEFAKEVCEAVKEVWAPTPERPII 206 (564)
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecccCCCCCHHHHHHHHHHHHHhCCCccCCeeE
Confidence 21 0 11244556667777653 25667777 7777766665531 11 111
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
. .-|..-|..-..++.+.++.+++.++.. .+++|++ |-|.-..|.-..+++||+.|=
T Consensus 207 i-~l~DTvG~a~P~~~~~~i~~l~~~~~~~-~~~~l~vH~HND~GlAvANslaAv~aGa~~v~ 267 (564)
T TIGR00970 207 F-NLPATVEMTTPNVYADSIEYFSTNIAER-EKVCLSLHPHNDRGTAVAAAELGFLAGADRIE 267 (564)
T ss_pred E-EeccccCccCHHHHHHHHHHHHHhcCcc-cCceEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 1 1244445444445567777777665432 2355777 899998899889999999864
|
A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria. |
| >cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain | Back alignment and domain information |
|---|
Probab=92.47 E-value=4.9 Score=36.87 Aligned_cols=141 Identities=13% Similarity=0.158 Sum_probs=79.6
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhc-cCCEEEE-EeecCCCC--CC
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLD-VVDLVLI-MSVNPGFG--GQ 203 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~-~vD~Ilv-msV~pG~~--GQ 203 (281)
+++.+.++|.+.|-+..-. ..++..+.++.+.+.+.+..+. +.+ ..+.++..++ .+|.|-+ +++.+.+- .+
T Consensus 27 i~~~L~~~Gv~~IEvG~P~-~~~~~~~~~~~l~~~~~~~~v~~~~r~--~~~di~~a~~~g~~~i~i~~~~S~~~~~~~~ 103 (262)
T cd07948 27 IAKALDAFGVDYIELTSPA-ASPQSRADCEAIAKLGLKAKILTHIRC--HMDDARIAVETGVDGVDLVFGTSPFLREASH 103 (262)
T ss_pred HHHHHHHcCCCEEEEECCC-CCHHHHHHHHHHHhCCCCCcEEEEecC--CHHHHHHHHHcCcCEEEEEEecCHHHHHHHh
Confidence 6677889999999884322 2344556667776666554442 333 3344555444 3776654 33333221 11
Q ss_pred -ccchhHHHHHHHHHHHhhhcCCCCeEEE--ecCCChhcH----HHHHHcCCcEEEEc--ccccCCCCHHHHHHHHHHh
Q 023494 204 -SFIESQVKKISDLRRMCLEKGVNPWIEV--DGGVGPKNA----YKVIEAGANALVAG--SAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 204 -~f~~~~l~kI~~lr~l~~~~~~~~~I~V--DGGI~~e~i----~~~~~aGAD~~VvG--SaIf~a~dp~~~~~~l~~~ 273 (281)
+-.++.++++.++.+...++|..+.+.+ ..+..++.+ +.+.++|+|.+.+. ..+....+..+.++.+++.
T Consensus 104 ~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~r~~~~~l~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~ 182 (262)
T cd07948 104 GKSITEIIESAVEVIEFVKSKGIEVRFSSEDSFRSDLVDLLRVYRAVDKLGVNRVGIADTVGIATPRQVYELVRTLRGV 182 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHh
Confidence 1235678888887777776665444332 455555544 56677899988776 2233333444555555554
|
Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th |
| >PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B | Back alignment and domain information |
|---|
Probab=92.44 E-value=0.32 Score=44.11 Aligned_cols=180 Identities=20% Similarity=0.278 Sum_probs=98.5
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE---------eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe--c
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD---------VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--V 125 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD---------ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~ 125 (281)
.+.+.|-.+.+ . .-+.++++|.+.+..- .-|+.+++ ++.-...++.|...+++|+.+|+=. -
T Consensus 9 ~~l~~p~~~D~-----~-SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt-~~e~~~~~~~I~~~~~iPv~vD~d~GyG 81 (238)
T PF13714_consen 9 KPLVLPNVWDA-----L-SARLAERAGFDAIATSGAGVAASLGYPDGGLLT-LTEMLAAVRRIARAVSIPVIVDADTGYG 81 (238)
T ss_dssp SSEEEEEESSH-----H-HHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S--HHHHHHHHHHHHHHSSSEEEEE-TTTSS
T ss_pred CcEEeCCCcCH-----H-HHHHHHHcCCCEEEechHHHHHHcCCCCCCCCC-HHHHHHHHHHHHhhhcCcEEEEcccccC
Confidence 45666766522 1 1345667788876653 33544443 2333455667766688999999877 2
Q ss_pred C-hh---hHHHHHHHcCCCEEEEccc-cc-------ccccHHHHHHHHHHcCCcEEEEECCCCCH------------HHH
Q 023494 126 E-PE---QRVPDFIKAGADIVSVHCE-QS-------STIHLHRTLNQIKDLGAKAGVVLNPATSL------------SAI 181 (281)
Q Consensus 126 d-p~---~~i~~~~~aGAd~Itvh~E-a~-------~~~~i~~~l~~ik~~G~k~Glai~p~t~i------------e~~ 181 (281)
| |. +.++.+.++|+..|++-.- +. +.++..+-|+.+++.-...++.|+-.|+. ++.
T Consensus 82 ~~~~~v~~tv~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~ 161 (238)
T PF13714_consen 82 NDPENVARTVRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERA 161 (238)
T ss_dssp SSHHHHHHHHHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHH
Confidence 3 64 4588899999999887533 00 12223333333333222222444433333 344
Q ss_pred HHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 182 ECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 182 ~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.|.+ .+|.|.+ ||. ...+.|+++.+.++ .++.+-.+=+.-++.++.+.|+..++.|...+.
T Consensus 162 ~aY~eAGAD~ifi----~~~-------~~~~~i~~~~~~~~-----~Pl~v~~~~~~~~~~eL~~lGv~~v~~~~~~~~ 224 (238)
T PF13714_consen 162 KAYAEAGADMIFI----PGL-------QSEEEIERIVKAVD-----GPLNVNPGPGTLSAEELAELGVKRVSYGNSLLR 224 (238)
T ss_dssp HHHHHTT-SEEEE----TTS-------SSHHHHHHHHHHHS-----SEEEEETTSSSS-HHHHHHTTESEEEETSHHHH
T ss_pred HHHHHcCCCEEEe----CCC-------CCHHHHHHHHHhcC-----CCEEEEcCCCCCCHHHHHHCCCcEEEEcHHHHH
Confidence 44444 3898865 343 22334555555542 466665542236888999999999999988775
|
... |
| >PRK09057 coproporphyrinogen III oxidase; Provisional | Back alignment and domain information |
|---|
Probab=92.39 E-value=3.6 Score=39.63 Aligned_cols=177 Identities=14% Similarity=0.186 Sum_probs=98.5
Q ss_pred CHHHHHHHHHH----cCCCeEEEEeeeCcccccccCCH----HHHHHcCcCCCCCeeEEEEe-cChh----hHHHHHHHc
Q 023494 71 KLGEQVKAVEL----AGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTDLPLDVHLMI-VEPE----QRVPDFIKA 137 (281)
Q Consensus 71 ~l~~~l~~l~~----~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~t~~~idaHLmv-~dp~----~~i~~~~~a 137 (281)
.|.++++...+ ..++.|++ |+-+|++ +.+ ++++.|++..+..-++++-+ .+|. .+++.+.++
T Consensus 39 aL~~Ei~~~~~~~~~~~i~tiy~----GGGTPs~-l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~ 113 (380)
T PRK09057 39 AFLRELATEAARTGPRTLTSIFF----GGGTPSL-MQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAA 113 (380)
T ss_pred HHHHHHHHHHHHcCCCCcCeEEe----CCCcccc-CCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHc
Confidence 55666654332 13667776 4446753 333 34455555432222233322 4674 468888999
Q ss_pred CCCEEEEcccccc------------cccHHHHHHHHHHcCCcEEEEEC---CCCCHHHH----HHhhc-cCCEEEEE--e
Q 023494 138 GADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVLN---PATSLSAI----ECVLD-VVDLVLIM--S 195 (281)
Q Consensus 138 GAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k~Glai~---p~t~ie~~----~~~l~-~vD~Ilvm--s 195 (281)
|.+.+++..++.+ .+++.+.++.+++.+..+.+.+- |....+.+ ..++. .+|.|.+. +
T Consensus 114 GvnrislGvQS~~d~vL~~l~R~~~~~~~~~ai~~~~~~~~~v~~dli~GlPgqt~~~~~~~l~~~~~l~p~~is~y~L~ 193 (380)
T PRK09057 114 GVNRVSLGVQALNDADLRFLGRLHSVAEALAAIDLAREIFPRVSFDLIYARPGQTLAAWRAELKEALSLAADHLSLYQLT 193 (380)
T ss_pred CCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHhCccEEEEeecCCCCCCHHHHHHHHHHHHhcCCCeEEeecce
Confidence 9999999988641 12355677778888888888654 44444332 22222 37877664 5
Q ss_pred ecCCCC------CCccc----hhHHHHHHHHHHHhhhcCCC-Ce---EEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 196 VNPGFG------GQSFI----ESQVKKISDLRRMCLEKGVN-PW---IEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 196 V~pG~~------GQ~f~----~~~l~kI~~lr~l~~~~~~~-~~---I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
+.||.. .+++. ....+..+.+++++.+.|+. +. .+-.|.....|..- . .+.|.+-+|
T Consensus 194 ~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~L~~~G~~~ye~s~~a~~g~~~~hn~~y-w-~~~~~lG~G 264 (380)
T PRK09057 194 IEEGTAFYGLHAAGKLILPDEDLAADLYELTQEITAAAGLPAYEISNHARPGAESRHNLTY-W-RYGDYAGIG 264 (380)
T ss_pred ecCCChHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCchhhhHHHcCCCchhhhHHHH-h-CCCCEEEEc
Confidence 677731 11221 23345667777777766542 11 11245444444432 3 466888877
|
|
| >PRK10076 pyruvate formate lyase II activase; Provisional | Back alignment and domain information |
|---|
Probab=92.36 E-value=1.6 Score=38.86 Aligned_cols=57 Identities=16% Similarity=0.134 Sum_probs=44.9
Q ss_pred cCCCEEEEcc-ccccc-ccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 137 AGADIVSVHC-EQSST-IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 137 aGAd~Itvh~-Ea~~~-~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
.+..+|||-+ |...- +-+.++++.+|+.|+.+.+..|-..+.+.++++++.+|.+++
T Consensus 37 ~sggGVt~SGGEPllq~~fl~~l~~~~k~~gi~~~leTnG~~~~~~~~~l~~~~D~~l~ 95 (213)
T PRK10076 37 TSGGGVTLSGGEVLMQAEFATRFLQRLRLWGVSCAIETAGDAPASKLLPLAKLCDEVLF 95 (213)
T ss_pred CCCCEEEEeCchHHcCHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHhcCEEEE
Confidence 3567888874 43211 125688999999999999999999999999999999998875
|
|
| >TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=92.32 E-value=1.3 Score=42.83 Aligned_cols=110 Identities=16% Similarity=0.243 Sum_probs=66.5
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEe--ecCCC-CCCcc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMS--VNPGF-GGQSF 205 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilvms--V~pG~-~GQ~f 205 (281)
..+.+.+.+++.+ ..+-+.+.++++|+.+..+-+-++|....+..+.+.+ .+|.|.+.. +...+ .|..
T Consensus 104 aa~~~~e~~~~~~-------~p~l~~~ii~~vr~a~VtvkiRl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~- 175 (369)
T TIGR01304 104 ATRLLQELHAAPL-------KPELLGERIAEVRDSGVITAVRVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSG- 175 (369)
T ss_pred HHHHHHHcCCCcc-------ChHHHHHHHHHHHhcceEEEEecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCC-
Confidence 3444556676663 1234678899999988665566665544555555555 389987752 22222 2211
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
. ...|.++++. .++++.+ |+|. .+.+..+.++|||.+++|+.
T Consensus 176 ~---p~~l~~~i~~-----~~IPVI~-G~V~t~e~A~~~~~aGaDgV~~G~g 218 (369)
T TIGR01304 176 E---PLNLKEFIGE-----LDVPVIA-GGVNDYTTALHLMRTGAAGVIVGPG 218 (369)
T ss_pred C---HHHHHHHHHH-----CCCCEEE-eCCCCHHHHHHHHHcCCCEEEECCC
Confidence 1 2234444432 2467766 5555 88999999999999997743
|
This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302. |
| >PRK14847 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=92.31 E-value=6.1 Score=37.74 Aligned_cols=193 Identities=18% Similarity=0.112 Sum_probs=103.2
Q ss_pred hcccccc-CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcCCCCCeeEEEE
Q 023494 46 ASARVDK-FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 46 ~~~~~~~-~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~t~~~idaHLm 123 (281)
|-.|.|- +++++ =+|.+ +++...=.+..+.|.+.|+|.|++ | | |..+- -.+.++.|.+.-..|.++.+.
T Consensus 32 ~p~~~DTTLRDGe--Q~pGv-~fs~eeKl~IA~~L~~lGVd~IEv----G-~-Pa~s~~e~e~ir~I~~~~~~~~~~~i~ 102 (333)
T PRK14847 32 APIWMSTDLRDGN--QALIE-PMDGARKLRLFEQLVAVGLKEIEV----A-F-PSASQTDFDFVRKLIDERRIPDDVTIE 102 (333)
T ss_pred CCceecCCCCccC--CCCCC-CCCHHHHHHHHHHHHHcCCCEEEe----e-C-CCCCHHHHHHHHHHHHhCCCCCCcEEE
Confidence 4455554 55544 23332 222222223345677889998888 4 3 54422 234555554321123356666
Q ss_pred ecChh--hHHHHHHHcCC----CEEEEccccc----------c----cccHHHHHHHHHHcCC-----cEEEEECCC---
Q 023494 124 IVEPE--QRVPDFIKAGA----DIVSVHCEQS----------S----TIHLHRTLNQIKDLGA-----KAGVVLNPA--- 175 (281)
Q Consensus 124 v~dp~--~~i~~~~~aGA----d~Itvh~Ea~----------~----~~~i~~~l~~ik~~G~-----k~Glai~p~--- 175 (281)
+-... .-++...+++. ++|++-.-.+ + .+.+.+.++.+|++|. +.-+.+.+.
T Consensus 103 ~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~V~~~~EDas 182 (333)
T PRK14847 103 ALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWIYEYSPETFS 182 (333)
T ss_pred EEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceEEEEeeecCC
Confidence 63322 23555666644 4566653221 0 1124566778888854 122333333
Q ss_pred -CCHHHHHHhhcc-----------CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhc
Q 023494 176 -TSLSAIECVLDV-----------VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKN 239 (281)
Q Consensus 176 -t~ie~~~~~l~~-----------vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~ 239 (281)
++.+.+.++... ++.|.+ |-.-|......+.+.|+.+++.+.. ..+++|++ |-|.-..|
T Consensus 183 Rad~dfL~~~~~~a~~~~ga~r~~a~~i~l----~DTVG~~~P~~~~~~i~~l~~~~~~-~~~v~i~~H~HnD~GlA~AN 257 (333)
T PRK14847 183 LAELDFAREVCDAVSAIWGPTPQRKMIINL----PATVESSTANVYADQIEWMHRSLAR-RDCIVLSVHPHNDRGTAVAA 257 (333)
T ss_pred CCCHHHHHHHHHHHHHHhCCCccCCcEEEe----CCccccCCHHHHHHHHHHHHHhcCC-CCCcEEEEEeCCCCchHHHH
Confidence 566666665442 233432 3334544434556778888765532 12356766 78888888
Q ss_pred HHHHHHcCCcEEE
Q 023494 240 AYKVIEAGANALV 252 (281)
Q Consensus 240 i~~~~~aGAD~~V 252 (281)
.-..+++||+.+=
T Consensus 258 slaA~~aGa~~i~ 270 (333)
T PRK14847 258 AELAVLAGAERIE 270 (333)
T ss_pred HHHHHHhCCCEEE
Confidence 8889999999864
|
|
| >PRK07360 FO synthase subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=92.30 E-value=3.1 Score=40.04 Aligned_cols=183 Identities=16% Similarity=0.146 Sum_probs=97.6
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccccccc---CCHHHHHHcCcCCCCCeeEEEEecC--------------hhh
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IGPLVVDALRPVTDLPLDVHLMIVE--------------PEQ 129 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~---~G~~~I~~ir~~t~~~idaHLmv~d--------------p~~ 129 (281)
++...+.+.++.+.+.|+..+++ .-| .-|+.. +=.++++.||+.. + ++|+.... ..+
T Consensus 91 ls~eeI~~~a~~a~~~G~~~i~l--~~G-~~p~~~~~e~~~~~i~~ik~~~--~-~i~i~a~s~~ei~~~~~~~G~~~~e 164 (371)
T PRK07360 91 LTIAEILEKAAEAVKRGATEVCI--QGG-LHPAADSLEFYLEILEAIKEEF--P-DIHLHAFSPMEVYFAAREDGLSYEE 164 (371)
T ss_pred CCHHHHHHHHHHHHhCCCCEEEE--ccC-CCCCCCcHHHHHHHHHHHHHhC--C-CcceeeCCHHHHHHHHhhcCCCHHH
Confidence 34556667777888889998766 444 335443 2346677777632 1 33333211 124
Q ss_pred HHHHHHHcCCCEEEE--------------cccccccccHHHHHHHHHHcCCcE--EEEECCCCCH-HHHHHhh--c--cC
Q 023494 130 RVPDFIKAGADIVSV--------------HCEQSSTIHLHRTLNQIKDLGAKA--GVVLNPATSL-SAIECVL--D--VV 188 (281)
Q Consensus 130 ~i~~~~~aGAd~Itv--------------h~Ea~~~~~i~~~l~~ik~~G~k~--Glai~p~t~i-e~~~~~l--~--~v 188 (281)
.++.+.++|.|.+.- +..-.+.++..++++.+++.|+++ |+.+...... ++++.+. . ++
T Consensus 165 ~l~~LkeAGld~~~~t~~e~l~~~vr~~i~p~~~s~~~~l~~i~~a~~~Gl~~~sg~i~G~gEt~edrv~~l~~lr~l~~ 244 (371)
T PRK07360 165 VLKALKDAGLDSMPGTAAEILVDEVRRIICPEKIKTAEWIEIVKTAHKLGLPTTSTMMYGHVETPEHRIDHLLILREIQQ 244 (371)
T ss_pred HHHHHHHcCCCcCCCcchhhccHHHHHhhCCCCCCHHHHHHHHHHHHHcCCCceeeEEeeCCCCHHHHHHHHHHHHHhch
Confidence 578899999998841 111002235568888899999965 4555444444 3333322 1 13
Q ss_pred CEEEE---Eee---cCCCC--CCc------cchhHHHHHHHHHHHhhhcCCCCeEEEecCC---ChhcHHHHHHcCCcEE
Q 023494 189 DLVLI---MSV---NPGFG--GQS------FIESQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANAL 251 (281)
Q Consensus 189 D~Ilv---msV---~pG~~--GQ~------f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI---~~e~i~~~~~aGAD~~ 251 (281)
+++-+ +.. ++|.- +.. -..+.++-|.-.|=+++.. .+-+-||- +.......+.+|||.+
T Consensus 245 ~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~----~~~i~a~~~~lg~~~~~~~l~~Gan~~ 320 (371)
T PRK07360 245 ETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNW----IKNIQASWVKLGLKLAQVALNCGANDL 320 (371)
T ss_pred hhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCC----CCCeeccceeeCHHHHHHHHhcCCccC
Confidence 44222 222 12321 111 1222244444445554431 12344452 2344456899999999
Q ss_pred ---EEcccccC
Q 023494 252 ---VAGSAVFG 259 (281)
Q Consensus 252 ---VvGSaIf~ 259 (281)
+.+..+..
T Consensus 321 ~~~~~~~~v~~ 331 (371)
T PRK07360 321 GGTLMEEHITK 331 (371)
T ss_pred cCcCcccceec
Confidence 77777776
|
|
| >cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases | Back alignment and domain information |
|---|
Probab=92.29 E-value=11 Score=36.17 Aligned_cols=190 Identities=11% Similarity=0.081 Sum_probs=105.4
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCc--cccccc--------------CCHHHHHHcCcCCCCCeeEEEEecCh--
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNIT--------------IGPLVVDALRPVTDLPLDVHLMIVEP-- 127 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~--------------~G~~~I~~ir~~t~~~idaHLmv~dp-- 127 (281)
+.|+..+.-.++.+++.+...| +.+-.++ |....+ .-..+++.+.+..+.|+-+||==...
T Consensus 23 ~~n~e~~~avi~AAee~~sPvI-iq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~ 101 (345)
T cd00946 23 CTSSSTINAVLEAARDAKSPII-IQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKL 101 (345)
T ss_pred eCCHHHHHHHHHHHHHhCCCEE-EECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 3344455566777888887765 5554442 211111 11233444444457899999854332
Q ss_pred -----------hhHHHHHHHcCCCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE--------E------CC
Q 023494 128 -----------EQRVPDFIKAGADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV--------L------NP 174 (281)
Q Consensus 128 -----------~~~i~~~~~aGAd~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla--------i------~p 174 (281)
..++..+.+.|.+.|-+=.-..+. ..-+++++.++..|+-+ |-. - ..
T Consensus 102 ~~~~~~~~~a~~~~~~~a~~~GftSVMiDgS~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~~~~~~~~~~ 181 (345)
T cd00946 102 LPWFDGLLEADEEYFKQHGEPLFSSHMLDLSEEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVDNSGVDNAEL 181 (345)
T ss_pred chhhHHHHHHHHHHHHHhccCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCccccccccccc
Confidence 223333445566666554332221 12446677778888654 221 0 01
Q ss_pred CCCHHHHHHhhc------cCCEEE--EEeecCCCC-C-CccchhHHHHHHHHHHHhhhc-----CCCCeEEEec--CCCh
Q 023494 175 ATSLSAIECVLD------VVDLVL--IMSVNPGFG-G-QSFIESQVKKISDLRRMCLEK-----GVNPWIEVDG--GVGP 237 (281)
Q Consensus 175 ~t~ie~~~~~l~------~vD~Il--vmsV~pG~~-G-Q~f~~~~l~kI~~lr~l~~~~-----~~~~~I~VDG--GI~~ 237 (281)
-|..+...++.+ .+|.+. +.++|--+. + .+.. +++|+++++.+.+. +.++++..=| |+..
T Consensus 182 yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~---~~~L~~I~~~i~~~~~~~~~~~ipLVLHGgSG~~~ 258 (345)
T cd00946 182 YTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQ---PEILGEHQDYVREKLGLADDKPLYFVFHGGSGSTK 258 (345)
T ss_pred CCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccC---HHHHHHHHHHHHHhhccccCCCCCEEEeCCCCCCH
Confidence 367778888876 457654 445552222 2 2233 55555554432221 1246777766 4568
Q ss_pred hcHHHHHHcCCcEEEEcccccC
Q 023494 238 KNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 238 e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.++++++.|+.-+=+++.+..
T Consensus 259 e~i~kai~~GI~KiNi~T~l~~ 280 (345)
T cd00946 259 EEIREAISYGVVKMNIDTDTQW 280 (345)
T ss_pred HHHHHHHHcCCeeEEeCcHHHH
Confidence 8999999999999999988754
|
The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures. |
| >COG2108 Uncharacterized conserved protein related to pyruvate formate-lyase activating enzyme [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.26 E-value=0.88 Score=43.16 Aligned_cols=88 Identities=22% Similarity=0.292 Sum_probs=57.3
Q ss_pred HHHHHcCcCCCCCeeEEEEe--cChh-hHHHHHHHcCCCEEEEccc---ccccccHHHHHHHHHHcCCcEEEEECCCCCH
Q 023494 105 LVVDALRPVTDLPLDVHLMI--VEPE-QRVPDFIKAGADIVSVHCE---QSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv--~dp~-~~i~~~~~aGAd~Itvh~E---a~~~~~i~~~l~~ik~~G~k~Glai~p~t~i 178 (281)
+.++.+|+..+..+++||.+ ..+. .-++.+.+||-|=|-||.- ....+...+.+..++++|+.+|+-+ |..|-
T Consensus 98 ~~ir~LK~efG~~fHiHLYT~g~~~~~e~l~~L~eAGLDEIRfHp~~~~~~~~e~~i~~l~~A~~~g~dvG~Ei-Paipg 176 (353)
T COG2108 98 EYIRLLKDEFGEDFHIHLYTTGILATEEALKALAEAGLDEIRFHPPRPGSKSSEKYIENLKIAKKYGMDVGVEI-PAIPG 176 (353)
T ss_pred HHHHHHHHhhccceeEEEeeccccCCHHHHHHHHhCCCCeEEecCCCccccccHHHHHHHHHHHHhCccceeec-CCCcc
Confidence 44556666566779999999 3443 4678899999999999982 1112223455555669999999987 34454
Q ss_pred -H----HHHHhhcc--CCEEEE
Q 023494 179 -S----AIECVLDV--VDLVLI 193 (281)
Q Consensus 179 -e----~~~~~l~~--vD~Ilv 193 (281)
+ .+.++++. .|++.+
T Consensus 177 ~e~~i~e~~~~~~~~~~~FlNi 198 (353)
T COG2108 177 EEEAILEFAKALDENGLDFLNI 198 (353)
T ss_pred hHHHHHHHHHHHHhcccceeee
Confidence 2 23333432 466654
|
|
| >PRK13399 fructose-1,6-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.26 E-value=7.9 Score=37.18 Aligned_cols=186 Identities=13% Similarity=0.104 Sum_probs=111.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
|+..+.-.++.+++.+...| +-+-.++ |.+ ..+-..+++.+.+.. +.|+-+||==......+..++++|.+.|-+
T Consensus 27 n~e~~~avi~AAEe~~sPvI-lq~s~~~~~~~g-~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFtSVMi 104 (347)
T PRK13399 27 NMEQILAIMEAAEATDSPVI-LQASRGARKYAG-DAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFTSVMM 104 (347)
T ss_pred CHHHHHHHHHHHHHhCCCEE-EECCcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCCEEEE
Confidence 44445556677777777765 4444442 221 112223444444444 489999985544445788899999877766
Q ss_pred cccccc-----------cccHHHHHHHHHHcCCcEEEEE--------------------------CCCCCHHHHHHhhc-
Q 023494 145 HCEQSS-----------TIHLHRTLNQIKDLGAKAGVVL--------------------------NPATSLSAIECVLD- 186 (281)
Q Consensus 145 h~Ea~~-----------~~~i~~~l~~ik~~G~k~Glai--------------------------~p~t~ie~~~~~l~- 186 (281)
=.-..+ ...-.++++.++..|+-+=--| ..-|..+...++.+
T Consensus 105 DgS~l~~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~PeeA~~Fv~~ 184 (347)
T PRK13399 105 DGSLLADGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQAVDFVQR 184 (347)
T ss_pred eCCCCCCCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHHHHHHHHH
Confidence 543221 1123467777888886542111 01356677777776
Q ss_pred -cCCEEE--EEeecCCCCC-Cccch--hHHHHHHHHHHHhhhcCCCCeEEEecCCC-----------------------h
Q 023494 187 -VVDLVL--IMSVNPGFGG-QSFIE--SQVKKISDLRRMCLEKGVNPWIEVDGGVG-----------------------P 237 (281)
Q Consensus 187 -~vD~Il--vmsV~pG~~G-Q~f~~--~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-----------------------~ 237 (281)
.+|.+. +.++|--+.+ ++..+ --+++|+++++.++ ++++..=||=+ .
T Consensus 185 TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~----~vPLVLHGgSGvp~~~~~~~~~~g~~~~~~~g~~~ 260 (347)
T PRK13399 185 TGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLP----NTHLVMHGSSSVPQELQEIINAYGGKMKETYGVPV 260 (347)
T ss_pred HCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcC----CCCEEEeCCCCCCHHHHHHHHHhcCCccccCCCCH
Confidence 488764 3445522222 11111 22677888777652 36787777665 5
Q ss_pred hcHHHHHHcCCcEEEEcccccC
Q 023494 238 KNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 238 e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|.++++++.|+.-|=+++.+..
T Consensus 261 e~~~kai~~GI~KINi~Tdl~~ 282 (347)
T PRK13399 261 EEIQRGIKHGVRKVNIDTDIRL 282 (347)
T ss_pred HHHHHHHHCCCeEEEeChHHHH
Confidence 8899999999999999988753
|
|
| >PRK04326 methionine synthase; Provisional | Back alignment and domain information |
|---|
Probab=92.24 E-value=3.7 Score=38.51 Aligned_cols=89 Identities=20% Similarity=0.398 Sum_probs=53.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
+.++++.+.+.|+++|++|- |.++..+. .++.+++. .+..+.+|+--.|....++.+.++|+|.+++
T Consensus 163 ~~~~i~~l~~~G~~~iqidE------P~l~~~~~~~~~~~~~l~~~~~~~~~~v~lH~C~G~~~~~~~~l~~~~vd~i~~ 236 (330)
T PRK04326 163 INEEIKNLVEAGAKYIQIDE------PALATHPEDVEIAVEALNRIVKGINAKLGLHVCYGDYSRIAPYILEFPVDQFDL 236 (330)
T ss_pred HHHHHHHHHHCCCCEEEecC------chhhcCHHHHHHHHHHHHHHHhCCCCEEEEEEeCCCcHHHHHHHHhCCCCEEEE
Confidence 44566778889999999982 33333332 22333332 2334556666566666688889999999998
Q ss_pred cccccccccHHHHHHHHHHc--CCcEEE
Q 023494 145 HCEQSSTIHLHRTLNQIKDL--GAKAGV 170 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik~~--G~k~Gl 170 (281)
-.-.. . .+.++.+++. |..+++
T Consensus 237 d~~~~-~---~~~l~~~~~~~~~~~l~~ 260 (330)
T PRK04326 237 EFANG-N---YKLLDLLKEYGFDKELGL 260 (330)
T ss_pred EeCCC-C---chhHHHhhccCCCCeEEe
Confidence 86431 1 1345566665 655554
|
|
| >TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase | Back alignment and domain information |
|---|
Probab=92.19 E-value=0.51 Score=41.94 Aligned_cols=65 Identities=23% Similarity=0.390 Sum_probs=51.2
Q ss_pred HHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
...++..|++|+|+.--+|-+ ..-.+++++++|+.++.|+.+=-=+.+++ .++.++++|||.|.+
T Consensus 140 a~aa~~~G~~~i~Le~~sGa~---~~v~~e~i~~Vk~~~~~Pv~vGGGIrs~e-~a~~l~~~GAD~VVV 204 (205)
T TIGR01769 140 CLAAKYFGMKWVYLEAGSGAS---YPVNPETISLVKKASGIPLIVGGGIRSPE-IAYEIVLAGADAIVT 204 (205)
T ss_pred HHHHHHcCCCEEEEEcCCCCC---CCCCHHHHHHHHHhhCCCEEEeCCCCCHH-HHHHHHHcCCCEEEe
Confidence 345567899999998777742 22458999999998888888888888877 456678899999976
|
This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum. |
| >PRK07807 inosine 5-monophosphate dehydrogenase; Validated | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.98 Score=45.13 Aligned_cols=123 Identities=21% Similarity=0.206 Sum_probs=76.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH--HHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR--VPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~--i~~~~~aGAd~Itvh~Ea 148 (281)
+..+.++.+.+.|+|.|-+|.-+|| +. .=.++|++||+.. | ++.+|.-|...+ ...+.++|||.|-+..-.
T Consensus 227 ~~~~~a~~Lv~aGvd~i~~D~a~~~---~~-~~~~~i~~ik~~~--p-~~~v~agnv~t~~~a~~l~~aGad~v~vgig~ 299 (479)
T PRK07807 227 DVAAKARALLEAGVDVLVVDTAHGH---QE-KMLEALRAVRALD--P-GVPIVAGNVVTAEGTRDLVEAGADIVKVGVGP 299 (479)
T ss_pred hHHHHHHHHHHhCCCEEEEeccCCc---cH-HHHHHHHHHHHHC--C-CCeEEeeccCCHHHHHHHHHcCCCEEEECccC
Confidence 4557778888999999999999996 11 1245677777642 1 455566454433 456789999999865332
Q ss_pred ----c-------cccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 149 ----S-------STIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 149 ----~-------~~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
. ..++ +.++.+.+++.|+.+.-.=.-.++-...+.+.-.+|.|++.+...|.
T Consensus 300 gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~ggi~~~~~~~~al~~ga~~v~~g~~~ag~ 365 (479)
T PRK07807 300 GAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWADGGVRHPRDVALALAAGASNVMIGSWFAGT 365 (479)
T ss_pred CcccccccccCCchhHHHHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHcCCCeeeccHhhccC
Confidence 0 0122 34455555567766555433445655555555568998887665554
|
|
| >PRK00507 deoxyribose-phosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=92.11 E-value=8.5 Score=34.48 Aligned_cols=112 Identities=21% Similarity=0.239 Sum_probs=66.3
Q ss_pred HHHHHHcCCCEEEEccccc--c---cccHHHHHHHHHHc--CCcEEEEE-CCCCCHHHHHHhhc-----cCCEEEEEeec
Q 023494 131 VPDFIKAGADIVSVHCEQS--S---TIHLHRTLNQIKDL--GAKAGVVL-NPATSLSAIECVLD-----VVDLVLIMSVN 197 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~--~---~~~i~~~l~~ik~~--G~k~Glai-~p~t~ie~~~~~l~-----~vD~IlvmsV~ 197 (281)
.+.+.+.||+-+-+-..-. . .+.+.+.++.+++. ++.+=+.+ .+.-+.+.+....+ .+|+|- ..
T Consensus 80 ~~~Ai~~GA~EiD~Vin~~~~~~g~~~~v~~ei~~v~~~~~~~~lKvIlEt~~L~~e~i~~a~~~~~~agadfIK---Ts 156 (221)
T PRK00507 80 AKDAIANGADEIDMVINIGALKSGDWDAVEADIRAVVEAAGGAVLKVIIETCLLTDEEKVKACEIAKEAGADFVK---TS 156 (221)
T ss_pred HHHHHHcCCceEeeeccHHHhcCCCHHHHHHHHHHHHHhcCCceEEEEeecCcCCHHHHHHHHHHHHHhCCCEEE---cC
Confidence 4566788998776553311 1 12344455555553 43333333 22223344443322 378664 34
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
.||. ....+++.++.+++... .++.|-+.|||+ .+++..++++||+-+
T Consensus 157 TG~~---~~gat~~~v~~m~~~~~---~~~~IKasGGIrt~~~a~~~i~aGA~ri 205 (221)
T PRK00507 157 TGFS---TGGATVEDVKLMRETVG---PRVGVKASGGIRTLEDALAMIEAGATRL 205 (221)
T ss_pred CCCC---CCCCCHHHHHHHHHHhC---CCceEEeeCCcCCHHHHHHHHHcCcceE
Confidence 5663 12256777777777764 347899999999 889999999999976
|
|
| >PRK13962 bifunctional phosphoglycerate kinase/triosephosphate isomerase; Provisional | Back alignment and domain information |
|---|
Probab=92.09 E-value=2.6 Score=43.71 Aligned_cols=137 Identities=15% Similarity=0.234 Sum_probs=80.0
Q ss_pred HHHHHHcCCCEEEEc-ccc-----cccccHHHHHHHHHHcCCcEEEEECCCC-------CH----HHHHHhhccCCE---
Q 023494 131 VPDFIKAGADIVSVH-CEQ-----SSTIHLHRTLNQIKDLGAKAGVVLNPAT-------SL----SAIECVLDVVDL--- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~Ea-----~~~~~i~~~l~~ik~~G~k~Glai~p~t-------~i----e~~~~~l~~vD~--- 190 (281)
.+++.++|++++.+. .|- .+.+.+.+=++.+.++|+.+.+-+.-.. .. +.+...++.++.
T Consensus 474 a~mLkd~G~~~viiGHSERR~~f~Etd~~V~~K~~~al~~GL~pIvCVGEtl~ere~g~t~~vv~~Ql~~~l~~v~~~~~ 553 (645)
T PRK13962 474 GPMLAEIGVEYVIIGHSERRQYFGETDELVNKKVLAALKAGLTPILCVGETLDERESGITFDVVRLQLKAALNGLSAEQV 553 (645)
T ss_pred HHHHHHcCCCEEEECcccccCCcCcchHHHHHHHHHHHHCCCEEEEEcCCCHHHHhcCCHHHHHHHHHHHHHccCCHhHc
Confidence 678999999999885 221 0234455556888899999888775321 11 123333333321
Q ss_pred -EEEEeecCCC---CCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEcccccC
Q 023494 191 -VLIMSVNPGF---GGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVFG 259 (281)
Q Consensus 191 -IlvmsV~pG~---~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaIf~ 259 (281)
=++..=+|=+ +|+.-.|+..+ -.+.+|+.+.+. ..+++|.=.|.++++|+.++. ...+|++-+|++=.+
T Consensus 554 ~~ivIAYEPVWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVGgASL~ 633 (645)
T PRK13962 554 KKVVIAYEPVWAIGTGKVATPEQAQEVHAFIRKLVAELYGEEAARKVRILYGGSVKSENAAGLFNQPDIDGGLVGGASLK 633 (645)
T ss_pred CcEEEEECcHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhChhhhccceEEecCCCCHhHHHHHhcCCCCCeEEeehHhcC
Confidence 0122336633 25443344332 234445544321 124678889999999999875 455899999988776
Q ss_pred CCCHHHHH
Q 023494 260 AKDYAEAI 267 (281)
Q Consensus 260 a~dp~~~~ 267 (281)
.++..+.+
T Consensus 634 ~~~F~~Ii 641 (645)
T PRK13962 634 AQEFAAIA 641 (645)
T ss_pred HHHHHHHH
Confidence 55444333
|
|
| >COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=92.06 E-value=1.5 Score=41.76 Aligned_cols=108 Identities=22% Similarity=0.340 Sum_probs=78.8
Q ss_pred eEeEEEeccCccCHH---HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 59 IVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 59 ~i~pSila~D~~~l~---~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+...|+..-|..+.+ +++++|+++|+|.+.+= ||+. ..-+.++.|++..+.|+.+|+--. .++.-.+.
T Consensus 22 I~VQSMTnT~T~Dv~aTv~QI~~L~~aG~dIVRvt------v~~~-e~A~A~~~Ik~~~~vPLVaDiHf~--~rla~~~~ 92 (361)
T COG0821 22 IVVQSMTNTDTADVEATVAQIKALERAGCDIVRVT------VPDM-EAAEALKEIKQRLNVPLVADIHFD--YRLALEAA 92 (361)
T ss_pred eEEEeccCCCcccHHHHHHHHHHHHHcCCCEEEEe------cCCH-HHHHHHHHHHHhCCCCEEEEeecc--HHHHHHhh
Confidence 455777777666655 67788999999998763 4543 345677888887789998887766 44666778
Q ss_pred HcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCC
Q 023494 136 KAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPA 175 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~ 175 (281)
++|+|.+-+-.-.. ..+.+.++++.+|++|+-+=+-.|-.
T Consensus 93 ~~g~~k~RINPGNig~~~~v~~vVe~Ak~~g~piRIGVN~G 133 (361)
T COG0821 93 ECGVDKVRINPGNIGFKDRVREVVEAAKDKGIPIRIGVNAG 133 (361)
T ss_pred hcCcceEEECCcccCcHHHHHHHHHHHHHcCCCEEEecccC
Confidence 99999998875432 13458899999999998766666644
|
|
| >PRK13352 thiamine biosynthesis protein ThiC; Provisional | Back alignment and domain information |
|---|
Probab=92.06 E-value=5.8 Score=38.88 Aligned_cols=124 Identities=25% Similarity=0.375 Sum_probs=66.1
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE-------------ECCCCCH-HHHHHhh---ccCCEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-------------LNPATSL-SAIECVL---DVVDLVL 192 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla-------------i~p~t~i-e~~~~~l---~~vD~Il 192 (281)
.++.-++-|.|++|+|+-- ..+.++.+++.+...|++ -+-+.|+ +.+.+++ ..-|+.+
T Consensus 148 ~ie~qa~~GVDfmTiHcGi-----~~~~~~~~~~~~R~~giVSRGGs~~~~WM~~n~~ENPlye~fD~lLeI~~~yDVtl 222 (431)
T PRK13352 148 VIEKQAKDGVDFMTIHCGV-----TRETLERLKKSGRIMGIVSRGGSFLAAWMLHNNKENPLYEHFDYLLEILKEYDVTL 222 (431)
T ss_pred HHHHHHHhCCCEEEEccch-----hHHHHHHHHhcCCccCeecCCHHHHHHHHHHcCCcCchHHHHHHHHHHHHHhCeee
Confidence 3555577899999999863 356788888888777765 1233455 3333333 3346655
Q ss_pred EEe--ecCCCCCCccchhHHHH---HHHHHHHhhhcCCCCeEEEecCCChhcHHH------HHHcCCcEEEEccccc
Q 023494 193 IMS--VNPGFGGQSFIESQVKK---ISDLRRMCLEKGVNPWIEVDGGVGPKNAYK------VIEAGANALVAGSAVF 258 (281)
Q Consensus 193 vms--V~pG~~GQ~f~~~~l~k---I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~------~~~aGAD~~VvGSaIf 258 (281)
=++ ..||.-........+.. +-+|.+...++|.+.-|+==|-+-.+.|.. =+-.||=.+|+|--.+
T Consensus 223 SLGDglRPG~i~Da~D~aQi~El~~lgeL~~RA~e~gVQvMVEGPGHvPl~~I~~nv~l~K~lc~~APfYvLGPLvT 299 (431)
T PRK13352 223 SLGDGLRPGCIADATDRAQIQELITLGELVKRAREAGVQVMVEGPGHVPLDQIEANVKLQKRLCHGAPFYVLGPLVT 299 (431)
T ss_pred eccCCcCCCccccCCcHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHHhhCCCCceecCcccc
Confidence 432 35775332222222222 333333333444333343334454543331 1236788888885544
|
|
| >COG0422 ThiC Thiamine biosynthesis protein ThiC [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=92.05 E-value=8.2 Score=37.49 Aligned_cols=124 Identities=23% Similarity=0.316 Sum_probs=68.0
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-------------CCCCCH----HHHHHhhccCCEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-------------NPATSL----SAIECVLDVVDLVL 192 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-------------~p~t~i----e~~~~~l~~vD~Il 192 (281)
.++.-++-|.|++|+|+-. ..+.+...++.|.-.|++= +.+.|+ +.+.++...-|+.+
T Consensus 146 ~v~~qa~~GVdfmTIHaGV-----~~~~~~~~~~~~R~~giVSRGGsi~a~Wml~~~~ENply~~fd~lleI~k~yDvtl 220 (432)
T COG0422 146 TVEKQAEQGVDFMTIHAGV-----LLEYVPRTKRSGRVTGIVSRGGSIMAAWMLHNHKENPLYEHFDELLEIFKEYDVTL 220 (432)
T ss_pred HHHHHHHhCCcEEEeehhh-----hHHHHHHHHhcCceeeeeccchHHHHHHHHHcCCcCchhhhHHHHHHHHHHhCeee
Confidence 4555677899999999863 3567888888887777751 223444 33333444457665
Q ss_pred EEe--ecCCCCCCccchhH---HHHHHHHHHHhhhcCCCCeEEEecCCChhcHH------HHHHcCCcEEEEccccc
Q 023494 193 IMS--VNPGFGGQSFIESQ---VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY------KVIEAGANALVAGSAVF 258 (281)
Q Consensus 193 vms--V~pG~~GQ~f~~~~---l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~------~~~~aGAD~~VvGSaIf 258 (281)
-++ ..||.-...-.... |..+-+|-+...++|.++-|+==|-|-.+.|+ +-...||=.+|+|--.+
T Consensus 221 SLGDglRPG~i~DA~D~aQ~~EL~tlgeL~krA~~~gVQvmvEGPGHvpl~~I~~nv~l~k~~c~~aPfYvLGPLvT 297 (432)
T COG0422 221 SLGDGLRPGCIADANDEAQFAELITLGELTKRAWEAGVQVMVEGPGHVPLNEIEANVKLQKELCDGAPFYVLGPLVT 297 (432)
T ss_pred eccCCCCCCcccCCccHHHHHHHHHHHHHHHHHHHcCCEEEEECCCcCcHHHHHHHHHHHHHhcCCCCeeeeCCccc
Confidence 442 35775322211111 33344444444455444444444455554333 11345778888885444
|
|
| >PF01487 DHquinase_I: Type I 3-dehydroquinase; InterPro: IPR001381 3-dehydroquinate dehydratase (4 | Back alignment and domain information |
|---|
Probab=92.02 E-value=1.9 Score=38.18 Aligned_cols=108 Identities=15% Similarity=0.173 Sum_probs=71.4
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc--cccCCHHHHHHcCcCCCCCeeEEEEec--------Chhh-
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP--NITIGPLVVDALRPVTDLPLDVHLMIV--------EPEQ- 129 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp--n~~~G~~~I~~ir~~t~~~idaHLmv~--------dp~~- 129 (281)
+.||..-|..++.++++.+...|+|++++.+ |. .+ +...-.+.++.||+.+++|+.+++-.. ++..
T Consensus 1 cv~l~~~~~~~~~~~~~~~~~~~~D~vElRl-D~--l~~~~~~~~~~~l~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~ 77 (224)
T PF01487_consen 1 CVPLTGSTLEELLAELEEAESSGADAVELRL-DY--LENDSAEDISEQLAELRRSLDLPIIFTVRTKEEGGRFQGSEEEY 77 (224)
T ss_dssp EEEE--SSHHHHHHHHHHHHHTTTSEEEEEG-GG--STTTSHHHHHHHHHHHHHHCTSEEEEE--BGGGTSSBSS-HHHH
T ss_pred CEeeCCCCHHHHHHHHHHHHhcCCCEEEEEe-cc--ccccChHHHHHHHHHHHHhCCCCEEEEecccccCCCCcCCHHHH
Confidence 3467777777888888888877899999962 21 12 223345678888877789999998874 1223
Q ss_pred --HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 130 --RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 130 --~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+++.+.+.|+|+|-+-... .++........++.|.++.+..+
T Consensus 78 ~~ll~~~~~~~~d~iDiE~~~--~~~~~~~~~~~~~~~~~iI~S~H 121 (224)
T PF01487_consen 78 LELLERAIRLGPDYIDIELDL--FPDDLKSRLAARKGGTKIILSYH 121 (224)
T ss_dssp HHHHHHHHHHTSSEEEEEGGC--CHHHHHHHHHHHHTTSEEEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEccc--chhHHHHHHHHhhCCCeEEEEec
Confidence 3556788899999997763 22222235666788899998876
|
2.1.10 from EC), or dehydroquinase, catalyzes the conversion of 3-dehydroquinate into 3-dehydroshikimate. It is the third step in the shikimate pathway for the biosynthesis of aromatic amino acids from chorismate. Two classes of dehydroquinases exist, known as types I and II. The best studied type I enzyme is from Escherichia coli (gene aroD) and related bacteria where it is a homodimeric protein. In fungi, dehydroquinase is part of a multifunctional enzyme which catalyzes five consecutive steps in the shikimate pathway. A histidine [] is involved in the catalytic mechanism.; GO: 0003855 3-dehydroquinate dehydratase activity; PDB: 2O7Q_A 2GPT_A 2O7S_A 1SFL_A 2OCZ_A 2OX1_C 1GQN_A 1QFE_B 1L9W_D 3L9C_A .... |
| >cd03316 MR_like Mandelate racemase (MR)-like subfamily of the enolase superfamily | Back alignment and domain information |
|---|
Probab=92.01 E-value=1.6 Score=41.18 Aligned_cols=119 Identities=11% Similarity=0.083 Sum_probs=74.8
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccc-----cccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~-----~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~Ilvm 194 (281)
+|..+++ .+.+.|.+.+-+|.-... .+...+.++++|+. +..+.+..|...+.+...++++.++-.
T Consensus 139 ~~~~~~~~a~~~~~~Gf~~~Kik~g~~~~~~~~~~~d~~~v~~ir~~~g~~~~l~vDaN~~~~~~~a~~~~~~l~~~--- 215 (357)
T cd03316 139 SPEELAEEAKRAVAEGFTAVKLKVGGPDSGGEDLREDLARVRAVREAVGPDVDLMVDANGRWDLAEAIRLARALEEY--- 215 (357)
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHhCcc---
Confidence 4665544 456789999999865311 12234667777774 567888888888887777766543211
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
...+-.|++.+..++..+++++.. +++|..|..+. ++.+..+++.| +|++.+-
T Consensus 216 --~i~~iEqP~~~~~~~~~~~l~~~~-----~ipi~~dE~~~~~~~~~~~i~~~~~d~v~~k 270 (357)
T cd03316 216 --DLFWFEEPVPPDDLEGLARLRQAT-----SVPIAAGENLYTRWEFRDLLEAGAVDIIQPD 270 (357)
T ss_pred --CCCeEcCCCCccCHHHHHHHHHhC-----CCCEEeccccccHHHHHHHHHhCCCCEEecC
Confidence 111224566555555566665542 47888999885 78888887654 6766543
|
Enzymes of this subgroup share three conserved carboxylate ligands for the essential divalent metal ion (usually Mg2+), two aspartates and a glutamate, and conserved catalytic residues, a Lys-X-Lys motif and a conserved histidine-aspartate dyad. Members of the MR subgroup are mandelate racemase, D-glucarate/L-idarate dehydratase (GlucD), D-altronate/D-mannonate dehydratase , D-galactonate dehydratase (GalD) , D-gluconate dehydratase (GlcD), and L-rhamnonate dehydratase (RhamD). |
| >TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit | Back alignment and domain information |
|---|
Probab=91.99 E-value=6.9 Score=36.79 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=90.5
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc------------------cCCHHHHHHcCcCCCCCeeEEEEecChh
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI------------------TIGPLVVDALRPVTDLPLDVHLMIVEPE 128 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~------------------~~G~~~I~~ir~~t~~~idaHLmv~dp~ 128 (281)
.+...+.++++.+.+.|+..+|+ .=|. -|.. .+-.+.++.+++.++....+++-..++.
T Consensus 35 l~~eeI~~~a~~~~~~G~~ei~l--~~G~-~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~~~~~~~g~lt~e 111 (322)
T TIGR03550 35 LSPEEVLEILRKGAAAGCTEALF--TFGE-KPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGLLPHTNPGVMSRD 111 (322)
T ss_pred CCHHHHHHHHHHHHHCCCCEEEE--ecCC-CccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCCccccCCCCCCHH
Confidence 34445556666666777776654 2221 1222 2233445666544444444444444433
Q ss_pred hHHHHHHHcCCCEEEEcccccc----------------cccHHHHHHHHHHcCCcEE--EEECCCCCHHHHHHhhc---c
Q 023494 129 QRVPDFIKAGADIVSVHCEQSS----------------TIHLHRTLNQIKDLGAKAG--VVLNPATSLSAIECVLD---V 187 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~----------------~~~i~~~l~~ik~~G~k~G--lai~p~t~ie~~~~~l~---~ 187 (281)
.++.+.++|++. .+-.|+.+ ..+..++++.+++.|++++ +.+.+....+...+.+. .
T Consensus 112 -~l~~Lk~aG~~~-~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i~G~gEt~ed~~~~l~~lr~ 189 (322)
T TIGR03550 112 -ELARLKPVNASM-GLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGILIGIGETREERAESLLAIRE 189 (322)
T ss_pred -HHHHHHhhCCCC-CcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceeeEeCCCCHHHHHHHHHHHHH
Confidence 456778888753 33333210 1224577888888998764 45555544443333321 1
Q ss_pred -------CCEEEEEeecC--CCC--CCc-cc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcE----
Q 023494 188 -------VDLVLIMSVNP--GFG--GQS-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANA---- 250 (281)
Q Consensus 188 -------vD~IlvmsV~p--G~~--GQ~-f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~---- 250 (281)
++.+.++...| |.. +.+ .. .+.++.|.-.|=+++. . ..|.+---...+.....+.+|||-
T Consensus 190 Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~-~--~~I~~~~~l~~~~~~~~L~~Gand~~gt 266 (322)
T TIGR03550 190 LHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPP-D--ISIQVPPNLNREDYRLLLDAGIDDWGGV 266 (322)
T ss_pred HHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCC-C--CeeecCCccChHHHHHHHhcCCccccCc
Confidence 23344344434 432 211 11 2334444444544432 1 223333222222467789999998
Q ss_pred -EEEccccc
Q 023494 251 -LVAGSAVF 258 (281)
Q Consensus 251 -~VvGSaIf 258 (281)
.++|.++.
T Consensus 267 ~~~~~~~~~ 275 (322)
T TIGR03550 267 SPVTPDHVN 275 (322)
T ss_pred ccCchhhcC
Confidence 56666665
|
This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria. |
| >cd08205 RuBisCO_IV_RLP Ribulose bisphosphate carboxylase like proteins, Rubisco-Form IV | Back alignment and domain information |
|---|
Probab=91.94 E-value=2.7 Score=40.58 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=102.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEee--eCccccc---ccCCHHHHHHcCcCCCC-CeeEEEEecChh---hHHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVM--DGRFVPN---ITIGPLVVDALRPVTDL-PLDVHLMIVEPE---QRVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDIm--DG~fvpn---~~~G~~~I~~ir~~t~~-~idaHLmv~dp~---~~i~~~~~ 136 (281)
.+|...+.+.+..+.++|+|.|-.|=. |..|.|. ...-.+.++...+.|+. ++.+--.+.+.. +..+.+.+
T Consensus 142 gld~~~la~~~~~l~~gGvD~Ikdde~~ge~~~~~~eER~~~v~~av~~a~~~TG~~~~y~~nit~~~~e~i~~a~~a~~ 221 (367)
T cd08205 142 GLSPEELAELAYELALGGIDLIKDDELLADQPYAPFEERVRACMEAVRRANEETGRKTLYAPNITGDPDELRRRADRAVE 221 (367)
T ss_pred CCCHHHHHHHHHHHHhcCCCeeeccccccCcccCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcCCCHHHHHHHHHHHHH
Confidence 578889999999999999998755411 2222221 12223333333333442 333322223333 34455678
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC------------CHHHHHHhhc--cCCEEEEEeecCCCCC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT------------SLSAIECVLD--VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t------------~ie~~~~~l~--~vD~IlvmsV~pG~~G 202 (281)
+|||.+-+-.-.. - ...++.+++.- .+-+.-++.. +.-.+.++.. .+|.+++ |+..|
T Consensus 222 ~Gad~vmv~~~~~-g---~~~~~~l~~~~-~lpi~~H~a~~ga~~~~~~~g~~~~~~~kl~RlaGad~~~~----~~~~g 292 (367)
T cd08205 222 AGANALLINPNLV-G---LDALRALAEDP-DLPIMAHPAFAGALSRSPDYGSHFLLLGKLMRLAGADAVIF----PGPGG 292 (367)
T ss_pred cCCCEEEEecccc-c---ccHHHHHHhcC-CCeEEEccCcccccccCCCCcCCHHHHHHHHHHcCCCcccc----CCCcc
Confidence 9999987775431 1 11233333322 2222223322 1223344433 3787754 33344
Q ss_pred -CccchhHHHHHHHH-HHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEE-cccccCCC-CHHHHHHHHHH
Q 023494 203 -QSFIESQVKKISDL-RRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVA-GSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 203 -Q~f~~~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~Vv-GSaIf~a~-dp~~~~~~l~~ 272 (281)
-.+.++.+.++.+. +.-+..-...++ ...||+++.+++.+++. |.|+++. |..|+..+ .+++-++.+++
T Consensus 293 k~~~~~~~~~~la~~~~~~~~~iK~~~P-v~sgG~~~~~v~~l~~~~G~dv~~~~GGgi~gHp~g~~ag~~a~r~ 366 (367)
T cd08205 293 RFPFSREECLAIARACRRPLGGIKPALP-VPSGGMHPGRVPELYRDYGPDVILLAGGGILGHPDGAAAGVRAFRQ 366 (367)
T ss_pred CcCCCHHHHHHHHHHHhCccccCCCcee-eccCCCCHHHHHHHHHHhCCcEEEEcCchhcCCCCChHHHHHHHhc
Confidence 22445555554431 111110001122 35889999999977655 8886654 57899885 67777777764
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions, like for example 2,3-diketo-5-methylthiopentyl-1-phosphate enolase or 5-methyl |
| >PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin) | Back alignment and domain information |
|---|
Probab=91.93 E-value=3.4 Score=32.34 Aligned_cols=92 Identities=18% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.-+...+++.|.++-+. ..+.+.+.+.+.+. .+|+|.+- +. + . ..++...++.+.+++.+.+.++.+
T Consensus 17 l~~la~~l~~~G~~v~~~-d~~~~~~~l~~~~~~~~pd~V~iS-~~--~-~-----~~~~~~~~l~~~~k~~~p~~~iv~ 86 (121)
T PF02310_consen 17 LLYLAAYLRKAGHEVDIL-DANVPPEELVEALRAERPDVVGIS-VS--M-T-----PNLPEAKRLARAIKERNPNIPIVV 86 (121)
T ss_dssp HHHHHHHHHHTTBEEEEE-ESSB-HHHHHHHHHHTTCSEEEEE-ES--S-S-----THHHHHHHHHHHHHTTCTTSEEEE
T ss_pred HHHHHHHHHHCCCeEEEE-CCCCCHHHHHHHHhcCCCcEEEEE-cc--C-c-----CcHHHHHHHHHHHHhcCCCCEEEE
Confidence 445566677788877643 33344455544433 48888763 31 0 1 122333444444555556677754
Q ss_pred ecCCChhcHHHHHH--cCCcEEEEcc
Q 023494 232 DGGVGPKNAYKVIE--AGANALVAGS 255 (281)
Q Consensus 232 DGGI~~e~i~~~~~--aGAD~~VvGS 255 (281)
.|..-...-..+.+ .|+|.+|.|-
T Consensus 87 GG~~~t~~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 87 GGPHATADPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp EESSSGHHHHHHHHHHHTSEEEEEET
T ss_pred ECCchhcChHHHhccCcCcceecCCC
Confidence 44443434445554 7999999994
|
Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A .... |
| >cd08209 RLP_DK-MTP-1-P-enolase 2,3-diketo-5-methylthiopentyl-1-phosphate enolase | Back alignment and domain information |
|---|
Probab=91.91 E-value=2 Score=41.80 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=70.6
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+-++..|+ |..-+.|++....|-.+.++=.......++-|- +|...+.+..+.+.+.|++.+.+|+
T Consensus 155 D~IKDDE~l~~q~-~~p~~eRv~a~~~a~~~a~~eTG~~~~ya~NiT-~~~~em~~ra~~~~~~G~~~~mv~~------- 225 (391)
T cd08209 155 DLIKDDEILFDNP-LAPALERIRACRPVLQEVYEQTGRRTLYAVNLT-GPVFTLKEKARRLVEAGANALLFNV------- 225 (391)
T ss_pred CcccccccCCCCC-CCCHHHHHHHHHHHHHHHHHhhCCcceEEEEcC-CCHHHHHHHHHHHHHhCCCEEEEec-------
Confidence 4444455553333 333344555555554444443333455677766 6778888889999999999988864
Q ss_pred cccCCHHHHHHcCcC--CCCCeeEEE-----EecChh------h-HHHHHHHcCCCEEEEcc
Q 023494 99 NITIGPLVVDALRPV--TDLPLDVHL-----MIVEPE------Q-RVPDFIKAGADIVSVHC 146 (281)
Q Consensus 99 n~~~G~~~I~~ir~~--t~~~idaHL-----mv~dp~------~-~i~~~~~aGAd~Itvh~ 146 (281)
...|...++.|++. .++|+.+|= ++..|. . +-+.+.-+|||.++++.
T Consensus 226 -~~~G~~~l~~l~~~~~~~lpIhaHra~~ga~~~~~~~Gis~~~~l~kl~RLaGaD~~~~~~ 286 (391)
T cd08209 226 -FAYGLDVLEALASDPEINVPIFAHPAFAGALYGSPDYGIAASVLLGTLMRLAGADAVLFPS 286 (391)
T ss_pred -cccchHHHHHHHhcCcCCcEEEecCCcccccccCCCCCCcHHHHHHHHHHHcCCCccccCC
Confidence 34577788888874 467788774 233332 1 12233456666666653
|
Ribulose bisphosphate carboxylase like proteins (RLPs) similar to B. subtilis YkrW protein, have been identified as 2,3-diketo-5-methylthiopentyl-1-phosphate enolases. They catalyze the tautomerization of 2,3-diketo-5-methylthiopentane 1-phosphate (DK-MTP 1-P). This is an important step in the methionine salvage pathway in which 5-methylthio-D-ribose (MTR) derived from 5'-methylthioadenosine is converted to methionine. |
| >PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related | Back alignment and domain information |
|---|
Probab=91.91 E-value=1.9 Score=41.45 Aligned_cols=95 Identities=19% Similarity=0.179 Sum_probs=61.2
Q ss_pred HHHHHHHc-CCcEEE-EECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 157 TLNQIKDL-GAKAGV-VLNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 157 ~l~~ik~~-G~k~Gl-ai~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
.++++++. ++.+.+ -+ ...+..+...+. +|.|.| +-| |-....+-+.+++-|.++++..+ .+++|.+||
T Consensus 216 ~i~~~~~~~~~pvivKgv---~~~~da~~~~~~G~~~i~v-s~h-GGr~~d~~~~~~~~L~~i~~~~~---~~~~i~~dg 287 (356)
T PF01070_consen 216 DIEWIRKQWKLPVIVKGV---LSPEDAKRAVDAGVDGIDV-SNH-GGRQLDWGPPTIDALPEIRAAVG---DDIPIIADG 287 (356)
T ss_dssp HHHHHHHHCSSEEEEEEE----SHHHHHHHHHTT-SEEEE-ESG-TGTSSTTS-BHHHHHHHHHHHHT---TSSEEEEES
T ss_pred HHHHHhcccCCceEEEec---ccHHHHHHHHhcCCCEEEe-cCC-CcccCccccccccccHHHHhhhc---CCeeEEEeC
Confidence 36666654 445443 12 355666666654 899987 333 32334566788888888888664 358999999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||. ...+-+.+..|||.+-+|+.+..
T Consensus 288 Gir~g~Dv~kalaLGA~~v~igr~~l~ 314 (356)
T PF01070_consen 288 GIRRGLDVAKALALGADAVGIGRPFLY 314 (356)
T ss_dssp S--SHHHHHHHHHTT-SEEEESHHHHH
T ss_pred CCCCHHHHHHHHHcCCCeEEEccHHHH
Confidence 999 44688889999999999988653
|
These enzymes are: Lactate dehydrogenase (1.1.2.3 from EC), which consists of a dehydrogenase domain and a haem-binding domain called cytochrome b2 and which catalyses the conversion of lactate into pyruvate. Glycolate oxidase (1.1.3.15 from EC) ((S)-2-hydroxy-acid oxidase), a peroxisomal enzyme that catalyses the conversion of glycolate and oxygen to glyoxylate and hydrogen peroxide. Long chain alpha-hydroxy acid oxidase from rat (1.1.3.15 from EC), a peroxisomal enzyme. Lactate 2-monooxygenase (1.13.12.4 from EC) (lactate oxidase) from Mycobacterium smegmatis, which catalyses the conversion of lactate and oxygen to acetate, carbon dioxide and water. (S)-mandelate dehydrogenase from Pseudomonas putida (gene mdlB), which catalyses the reduction of (S)-mandelate to benzoylformate. The first step in the reaction mechanism of these enzymes is the abstraction of the proton from the alpha-carbon of the substrate producing a carbanion which can subsequently attach to the N5 atom of FMN. A conserved histidine has been shown [] to be involved in the removal of the proton. The region around this active site residue is highly conserved and contains an arginine residue which is involved in substrate binding.; GO: 0016491 oxidoreductase activity; PDB: 1VCG_C 1VCF_A 1P0N_B 1P0K_A 2A85_A 2A7P_A 3GIY_A 2A7N_A 3DH7_A 2RDU_A .... |
| >PRK01261 aroD 3-dehydroquinate dehydratase; Provisional | Back alignment and domain information |
|---|
Probab=91.90 E-value=3.2 Score=37.43 Aligned_cols=121 Identities=15% Similarity=0.203 Sum_probs=78.3
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~ 130 (281)
+-.+..+|+.+|.+-+..++..+.+.+...|+|.+++. -.+. + +...-.+.++.+++. ++|+.+-+-..+..+.
T Consensus 16 ~g~~~p~Icvpi~~~~~ee~~~~~~~~~~~~aDivE~RlD~l~~-~--~~~~~~~~~~~l~~~-~~p~I~T~R~~~~~~~ 91 (229)
T PRK01261 16 IGNMQPIVVESIFFKDIKEMKERFKTKVLSDKNLYEIRFDLFHD-H--SIESEPEIISALNEM-DIDYIFTYRGVDARKY 91 (229)
T ss_pred eCCCCcEEEEEeCCCCHHHHHHHHHHhhcCCCCEEEEEeeccCC-C--ChHHHHHHHHHHhhc-CCCEEEEEcCCCHHHH
Confidence 44556789999999999888888888888899998875 2332 1 111113445556654 6788877766554455
Q ss_pred HHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh
Q 023494 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l 185 (281)
...+.+.++|++=+-.+. ..+ + ..++.|.++-++-+.. +.+.+..++
T Consensus 92 l~~a~~~~~d~vDIEl~~-----~~~-~-~~~~~~~kvIvS~Htp-~~eeL~~~l 138 (229)
T PRK01261 92 YETAIDKMPPAVDLDINL-----IGK-L-EFRPRNTMLMVSYHTN-NSDNMPAIL 138 (229)
T ss_pred HHHHHhhCCCEEEEEccc-----chh-h-hhhcCCCeEEEEeCCC-CHHHHHHHH
Confidence 666677789998866552 112 2 3457788888888732 334444444
|
|
| >PRK05628 coproporphyrinogen III oxidase; Validated | Back alignment and domain information |
|---|
Probab=91.80 E-value=7.3 Score=37.28 Aligned_cols=195 Identities=20% Similarity=0.210 Sum_probs=103.6
Q ss_pred CHHHHHHHHHHc------CCCeEEEEeeeCcccccc---cCCHHHHHHcCcCCCCCeeEEEEe-cChh----hHHHHHHH
Q 023494 71 KLGEQVKAVELA------GCDWIHVDVMDGRFVPNI---TIGPLVVDALRPVTDLPLDVHLMI-VEPE----QRVPDFIK 136 (281)
Q Consensus 71 ~l~~~l~~l~~~------G~d~iHiDImDG~fvpn~---~~G~~~I~~ir~~t~~~idaHLmv-~dp~----~~i~~~~~ 136 (281)
.|.++++...+. .++.+++ -+| +|++ ..=.++++.+++..+...++.+-+ .||. +.++.+.+
T Consensus 41 ~l~~Ei~~~~~~~~~~~~~i~~i~~--GGG--TPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~ 116 (375)
T PRK05628 41 ALRAELELAAAVLGDPAPPVSTVFV--GGG--TPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRA 116 (375)
T ss_pred HHHHHHHHHHHhhccCCCceeEEEe--CCC--ccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHH
Confidence 556666554322 1444444 344 4543 111233444454323222233333 3664 46888899
Q ss_pred cCCCEEEEcccccc------------cccHHHHHHHHHHcCCc-EEEEEC---CCCCHHHHHHhhcc-----CCEEEE--
Q 023494 137 AGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAK-AGVVLN---PATSLSAIECVLDV-----VDLVLI-- 193 (281)
Q Consensus 137 aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k-~Glai~---p~t~ie~~~~~l~~-----vD~Ilv-- 193 (281)
+|.+.|++..++.+ .+++.+.++.+++.|++ +.+.+- |....+.+..-++. +|.|.+
T Consensus 117 ~G~~rvslGvQS~~~~~L~~l~R~~s~~~~~~a~~~l~~~g~~~v~~dli~GlPgqt~~~~~~tl~~~~~l~~~~i~~y~ 196 (375)
T PRK05628 117 AGFTRVSLGMQSAAPHVLAVLDRTHTPGRAVAAAREARAAGFEHVNLDLIYGTPGESDDDWRASLDAALEAGVDHVSAYA 196 (375)
T ss_pred cCCCEEEEecccCCHHHHHHcCCCCCHHHHHHHHHHHHHcCCCcEEEEEeccCCCCCHHHHHHHHHHHHhcCCCEEEeee
Confidence 99999999988642 12355677888999988 877542 66666555444332 677654
Q ss_pred EeecCCCC-------C-Cccc--hhHHHHHHHHHHHhhhcCCCCeEEE-----ecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 194 MSVNPGFG-------G-QSFI--ESQVKKISDLRRMCLEKGVNPWIEV-----DGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 194 msV~pG~~-------G-Q~f~--~~~l~kI~~lr~l~~~~~~~~~I~V-----DGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+++.||.. | .+.. +...+....+.+.+.+.|+. ..++ .|.-...|.. ... +.|.+=+|.+=+
T Consensus 197 l~~~~gT~l~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~~G~~-~ye~s~fa~~~~~~~hn~~-yw~-~~~~lg~G~gA~ 273 (375)
T PRK05628 197 LIVEDGTALARRVRRGELPAPDDDVLADRYELADARLSAAGFD-WYEVSNWARPGGECRHNLG-YWR-GGDWWGAGPGAH 273 (375)
T ss_pred eecCCCChHHHHhhcCCCCCCChHHHHHHHHHHHHHHHHcCCC-eeeeccccCCCcccccchh-hcC-CCCEEEEccCcc
Confidence 35677752 1 1111 22345566667777666543 2333 2333333432 222 678887773221
Q ss_pred ---------CCCCHHHHHHHHHH
Q 023494 259 ---------GAKDYAEAIKGIKT 272 (281)
Q Consensus 259 ---------~a~dp~~~~~~l~~ 272 (281)
+..|..+.++.+.+
T Consensus 274 s~~~~~~~~n~~~l~~Y~~~v~~ 296 (375)
T PRK05628 274 SHVGGVRWWNVKHPAAYAARLAA 296 (375)
T ss_pred cccCCEEEEcCCCHHHHHHHHHc
Confidence 23456666655543
|
|
| >PRK11858 aksA trans-homoaconitate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.77 E-value=10 Score=36.64 Aligned_cols=142 Identities=18% Similarity=0.173 Sum_probs=81.9
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEEE-eecCCCC--C-Cc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIM-SVNPGFG--G-QS 204 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~Ilvm-sV~pG~~--G-Q~ 204 (281)
+++.+.++|.+.|-+..-+. .++-.+.++.+.+.|.+.-+.....+..+.++..++. +|.|-+. ++.+-.- . ..
T Consensus 31 ia~~L~~~GV~~IE~G~p~~-~~~~~e~i~~i~~~~~~~~i~~~~r~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~ 109 (378)
T PRK11858 31 IARMLDEIGVDQIEAGFPAV-SEDEKEAIKAIAKLGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKK 109 (378)
T ss_pred HHHHHHHhCCCEEEEeCCCc-ChHHHHHHHHHHhcCCCeEEEEEcccCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCC
Confidence 56778899999988754331 2334467888888888776644333445556665553 7766542 2222100 0 11
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE-ecCCC-hh----cHHHHHHcCCcEEEEcccccCCCCHH---HHHHHHHHh
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV-DGGVG-PK----NAYKVIEAGANALVAGSAVFGAKDYA---EAIKGIKTS 273 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V-DGGI~-~e----~i~~~~~aGAD~~VvGSaIf~a~dp~---~~~~~l~~~ 273 (281)
-.++.++++.+..+...+.|..+.+.. |++-. ++ -++.+.++|+|.+.+.=.. +.-.|. +.++.+++.
T Consensus 110 s~~~~l~~~~~~v~~a~~~G~~v~~~~ed~~r~~~~~l~~~~~~~~~~Ga~~I~l~DT~-G~~~P~~v~~lv~~l~~~ 186 (378)
T PRK11858 110 TREEVLERMVEAVEYAKDHGLYVSFSAEDASRTDLDFLIEFAKAAEEAGADRVRFCDTV-GILDPFTMYELVKELVEA 186 (378)
T ss_pred CHHHHHHHHHHHHHHHHHCCCeEEEEeccCCCCCHHHHHHHHHHHHhCCCCEEEEeccC-CCCCHHHHHHHHHHHHHh
Confidence 246778888888887777665444332 55543 44 3455678899988776221 333454 444444443
|
|
| >TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase | Back alignment and domain information |
|---|
Probab=91.77 E-value=2.3 Score=40.56 Aligned_cols=108 Identities=20% Similarity=0.298 Sum_probs=76.5
Q ss_pred ceEeEEEeccCccCHH---HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 58 IIVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 58 ~~i~pSila~D~~~l~---~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
.+...|+..-|..+.+ +++++|.++||+.+-+= ||+. .-.+.++.|++.++.|+.+|+--+.. +.-.+
T Consensus 19 PI~VQSMtnt~T~Dv~atv~QI~~L~~aGceiVRva------vp~~-~~A~al~~I~~~~~iPlVADIHFd~~--lAl~a 89 (346)
T TIGR00612 19 PIVVQSMTNTDTIDIDSTVAQIRALEEAGCDIVRVT------VPDR-ESAAAFEAIKEGTNVPLVADIHFDYR--LAALA 89 (346)
T ss_pred cEEEEecCCCCchhHHHHHHHHHHHHHcCCCEEEEc------CCCH-HHHHhHHHHHhCCCCCEEEeeCCCcH--HHHHH
Confidence 3556788888777766 56678889999998774 3432 13456777777788999998876642 33356
Q ss_pred HHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECC
Q 023494 135 IKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNP 174 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p 174 (281)
.+.|+|-+-+-.-.. ..+.+.++++.+|++|+-+=+-.|.
T Consensus 90 ~~~g~dkiRINPGNig~~e~v~~vv~~ak~~~ipIRIGVN~ 130 (346)
T TIGR00612 90 MAKGVAKVRINPGNIGFRERVRDVVEKARDHGKAMRIGVNH 130 (346)
T ss_pred HHhccCeEEECCCCCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence 788999998875432 2456889999999999765555553
|
Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins. |
| >cd08148 RuBisCO_large Ribulose bisphosphate carboxylase large chain | Back alignment and domain information |
|---|
Probab=91.77 E-value=2.2 Score=41.19 Aligned_cols=80 Identities=25% Similarity=0.302 Sum_probs=54.9
Q ss_pred ccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC
Q 023494 34 SFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113 (281)
Q Consensus 34 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~ 113 (281)
..-+.|++....|-.+.++-.......+|-|- +|...+.+..+.+.+.|++.+.+|++- .|...++.+++.
T Consensus 172 ~p~~eRv~~~~~a~~~a~~eTG~~~~y~~NiT-~~~~em~~ra~~~~~~G~~~~mv~~~~--------~G~~~l~~l~~~ 242 (366)
T cd08148 172 CPLRDRITEVAAALDRVQEETGEKKLYAVNVT-AGTFEIIERAERALELGANMLMVDVLT--------AGFSALQALAED 242 (366)
T ss_pred CcHHHHHHHHHHHHHHHHHhhCCcceEEEEcc-CCHHHHHHHHHHHHHhCCCEEEEeccc--------cchHHHHHHHHh
Confidence 33345566666655554444444556777777 555788888999999999998887444 466788888874
Q ss_pred --CCCCeeEEE
Q 023494 114 --TDLPLDVHL 122 (281)
Q Consensus 114 --t~~~idaHL 122 (281)
.+.++.+|-
T Consensus 243 ~~~~l~IhaHr 253 (366)
T cd08148 243 FEIDLPIHVHR 253 (366)
T ss_pred CcCCcEEEecc
Confidence 367888874
|
Ribulose bisphosphate carboxylase (Rubisco) plays an important role in the Calvin reductive pentose phosphate pathway. It catalyzes the primary CO2 fixation step. Rubisco is activated by carbamylation of an active site lysine, stabilized by a divalent cation, which then catalyzes the proton abstraction from the substrate ribulose 1,5 bisphosphate (RuBP) and leads to the formation of two molecules of 3-phosphoglycerate. Members of the Rubisco family can be divided into 4 subgroups, Form I-IV, which differ in their taxonomic distribution and subunit composition. Form I-III have Rubisco activity, while Form IV, also called Rubisco-like proteins (RLP), are missing critical active site residues and therefore do not catalyze CO2 fixation. They are believed to utilize a related enzymatic mechanism, but have divergent functions. |
| >PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed | Back alignment and domain information |
|---|
Probab=91.76 E-value=2.7 Score=38.48 Aligned_cols=122 Identities=17% Similarity=0.151 Sum_probs=71.2
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
-++.-||..-.-++..+..+|+|.++++..+- + +..++++-+. .+....+. +.+.. -++.+.++|+
T Consensus 113 Pvl~kdfi~~~~qi~~a~~~GAD~VlLi~~~l---~-----~~~l~~li~~a~~lGl~~lve--vh~~~-E~~~A~~~ga 181 (260)
T PRK00278 113 PVLRKDFIIDPYQIYEARAAGADAILLIVAAL---D-----DEQLKELLDYAHSLGLDVLVE--VHDEE-ELERALKLGA 181 (260)
T ss_pred CEEeeeecCCHHHHHHHHHcCCCEEEEEeccC---C-----HHHHHHHHHHHHHcCCeEEEE--eCCHH-HHHHHHHcCC
Confidence 34557887777789999999999999985552 1 2333333221 23332222 23433 3356778999
Q ss_pred CEEEEcccccc--cccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc-CCEEEEEe
Q 023494 140 DIVSVHCEQSS--TIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMS 195 (281)
Q Consensus 140 d~Itvh~Ea~~--~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~-vD~Ilvms 195 (281)
|+|.+|..+.. ..++..+.+.++.. +..+-++..--+..+.+..+... +|-|++++
T Consensus 182 diIgin~rdl~~~~~d~~~~~~l~~~~p~~~~vIaegGI~t~ed~~~~~~~Gad~vlVGs 241 (260)
T PRK00278 182 PLIGINNRNLKTFEVDLETTERLAPLIPSDRLVVSESGIFTPEDLKRLAKAGADAVLVGE 241 (260)
T ss_pred CEEEECCCCcccccCCHHHHHHHHHhCCCCCEEEEEeCCCCHHHHHHHHHcCCCEEEECH
Confidence 99999964210 12243333333332 22255666555566777777664 78888743
|
|
| >PLN02274 inosine-5'-monophosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=91.74 E-value=0.77 Score=46.14 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=71.4
Q ss_pred HHHHHHHcCCCEEEEccccc---ccccHHHHHHHHHH----------c-CCcEEEEECCC-CCHHHHHHhhc-cCCEEEE
Q 023494 130 RVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKD----------L-GAKAGVVLNPA-TSLSAIECVLD-VVDLVLI 193 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~---~~~~i~~~l~~ik~----------~-G~k~Glai~p~-t~ie~~~~~l~-~vD~Ilv 193 (281)
-++.+.+.+...+-|--+.. ..-+...+++.... . -+.+|.++.+. ...++.+.+++ .+|+|.+
T Consensus 187 Al~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~p~~~~~~~d~~~~l~vgaavg~~~~~~~r~~~l~~ag~d~i~i 266 (505)
T PLN02274 187 AEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGYPKLGKPSVGKDGKLLVGAAIGTRESDKERLEHLVKAGVDVVVL 266 (505)
T ss_pred HHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCcCccccccCCCCCEEEEEEEcCCccHHHHHHHHHHcCCCEEEE
Confidence 35566677777665543210 01223333333322 1 24578888764 34688888877 4999876
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
=+. .| ....+++.|+++|+..+. .+| +-|+|. .+.+..+.++|||++++|
T Consensus 267 D~~----~g--~~~~~~~~i~~ik~~~p~----~~v-i~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 267 DSS----QG--DSIYQLEMIKYIKKTYPE----LDV-IGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred eCC----CC--CcHHHHHHHHHHHHhCCC----CcE-EEecCCCHHHHHHHHHcCcCEEEEC
Confidence 432 13 233566778888876542 344 567776 889999999999999986
|
|
| >TIGR01334 modD putative molybdenum utilization protein ModD | Back alignment and domain information |
|---|
Probab=91.61 E-value=0.78 Score=42.63 Aligned_cols=85 Identities=13% Similarity=0.179 Sum_probs=64.0
Q ss_pred HHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Q 023494 105 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183 (281)
Q Consensus 105 ~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~ 183 (281)
+.++.+|+. +...+.|.+ . ..+....+.++|+|.|-+|-. +.+++.+.++.+++.+.++-+...-+-..+.+.+
T Consensus 177 ~av~~~r~~~~~~kIeVEv--~-tleea~ea~~~GaDiI~lDn~--~~e~l~~~v~~l~~~~~~~~leasGGI~~~ni~~ 251 (277)
T TIGR01334 177 GAIGRLKQTAPERKITVEA--D-TIEQALTVLQASPDILQLDKF--TPQQLHHLHERLKFFDHIPTLAAAGGINPENIAD 251 (277)
T ss_pred HHHHHHHHhCCCCCEEEEC--C-CHHHHHHHHHcCcCEEEECCC--CHHHHHHHHHHHhccCCCEEEEEECCCCHHHHHH
Confidence 567777764 445565544 2 334667788999999999966 4677888888887666778888888888899999
Q ss_pred hhcc-CCEEEEE
Q 023494 184 VLDV-VDLVLIM 194 (281)
Q Consensus 184 ~l~~-vD~Ilvm 194 (281)
|... +|+|.+.
T Consensus 252 ya~~GvD~is~g 263 (277)
T TIGR01334 252 YIEAGIDLFITS 263 (277)
T ss_pred HHhcCCCEEEeC
Confidence 9875 9998653
|
The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown. |
| >PLN02321 2-isopropylmalate synthase | Back alignment and domain information |
|---|
Probab=91.61 E-value=7.8 Score=40.14 Aligned_cols=182 Identities=19% Similarity=0.217 Sum_probs=100.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccccc-CCHHHHHHcCcC--CCCCeeEEE------EecChhhHHHHHHHc--CCC--
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNIT-IGPLVVDALRPV--TDLPLDVHL------MIVEPEQRVPDFIKA--GAD-- 140 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~-~G~~~I~~ir~~--t~~~idaHL------mv~dp~~~i~~~~~a--GAd-- 140 (281)
+.++.|.+.|+|.|++ | | |..+ -..+.++.|.+. ...+.++-. --.+. +-++.++++ +++
T Consensus 112 ~Ia~~L~~lGVd~IEv----G-f-P~~Sp~D~e~vr~i~~~~~~~v~~~~~v~~i~a~~ra~~-~dId~A~~al~~a~~~ 184 (632)
T PLN02321 112 DIARQLAKLGVDIIEA----G-F-PIASPDDLEAVKTIAKEVGNEVDEDGYVPVICGLSRCNK-KDIDAAWEAVKHAKRP 184 (632)
T ss_pred HHHHHHHHcCCCEEEE----e-C-cCCCccHHHHHHHHHHhcccCCCccccceeeeeehhccH-HhHHHHHHHhcCCCCC
Confidence 4456777899998887 4 3 2221 123456666442 112222211 11232 346667776 443
Q ss_pred EEEEcccccccc---------------cHHHHHHHHHHcCCcEEEEECCC----CCHHHHHHhhcc-----CCEEEEEee
Q 023494 141 IVSVHCEQSSTI---------------HLHRTLNQIKDLGAKAGVVLNPA----TSLSAIECVLDV-----VDLVLIMSV 196 (281)
Q Consensus 141 ~Itvh~Ea~~~~---------------~i~~~l~~ik~~G~k~Glai~p~----t~ie~~~~~l~~-----vD~IlvmsV 196 (281)
.|++..-.. .. .+.+.++.+|++|+. -+.+.+. ++.+.+.++++. +|.|.+
T Consensus 185 ~I~i~~stS-d~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~-~v~fs~EDa~rtd~d~l~~~~~~a~~aGa~~I~L--- 259 (632)
T PLN02321 185 RIHTFIATS-EIHMEHKLRKTPDEVVEIARDMVKYARSLGCE-DVEFSPEDAGRSDPEFLYRILGEVIKAGATTLNI--- 259 (632)
T ss_pred EEEEEEcCC-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCc-eEEEecccCCCCCHHHHHHHHHHHHHcCCCEEEe---
Confidence 465554321 11 256778888999874 2333333 566666665543 666654
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEcccccC------CCCHHHH
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVFG------AKDYAEA 266 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf~------a~dp~~~ 266 (281)
|-..|.....+..+.|+.+++.++.. .+..|.+ |-|.-..|.-..+++||+.+ =+.|++ +.+.++.
T Consensus 260 -~DTvG~~~P~~v~~li~~l~~~~~~~-~~v~i~vH~HND~GlAvANslaAv~AGA~~V--d~TinGlGERaGNa~LEev 335 (632)
T PLN02321 260 -PDTVGYTLPSEFGQLIADIKANTPGI-ENVIISTHCQNDLGLSTANTLAGAHAGARQV--EVTINGIGERAGNASLEEV 335 (632)
T ss_pred -cccccCCCHHHHHHHHHHHHHhcCCC-CCceEEEEeCCCCCHHHHHHHHHHHhCCCEE--EEecccccccccCccHHHH
Confidence 34445444456667777777665421 1245666 77888888888999999975 333442 2345555
Q ss_pred HHHHH
Q 023494 267 IKGIK 271 (281)
Q Consensus 267 ~~~l~ 271 (281)
+..|+
T Consensus 336 v~~L~ 340 (632)
T PLN02321 336 VMAIK 340 (632)
T ss_pred HHHHH
Confidence 54443
|
|
| >PRK09197 fructose-bisphosphate aldolase; Provisional | Back alignment and domain information |
|---|
Probab=91.58 E-value=11 Score=36.27 Aligned_cols=188 Identities=12% Similarity=0.143 Sum_probs=107.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--cccc--ccC------------CHHHHHHcCcCCCCCeeEEEEecCh--hh
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPN--ITI------------GPLVVDALRPVTDLPLDVHLMIVEP--EQ 129 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn--~~~------------G~~~I~~ir~~t~~~idaHLmv~dp--~~ 129 (281)
|+..+.-.++.+++.....| +-+-.++ |... +.. ...+++.+.+..+.|+-+||==... ..
T Consensus 30 n~e~~~avi~AAee~~sPVI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~~ 108 (350)
T PRK09197 30 GTDSINAVLEGAAEAKSPVI-IQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLLP 108 (350)
T ss_pred CHHHHHHHHHHHHHHCCCEE-EEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcchH
Confidence 33344455666777777665 4444432 1110 111 1234454445567899999865433 44
Q ss_pred HHHHHHHcC-----------CCEEEEccccccc----ccHHHHHHHHHHcCCcE----EEE------E--------CCCC
Q 023494 130 RVPDFIKAG-----------ADIVSVHCEQSST----IHLHRTLNQIKDLGAKA----GVV------L--------NPAT 176 (281)
Q Consensus 130 ~i~~~~~aG-----------Ad~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~----Gla------i--------~p~t 176 (281)
++..++++| .+.|-+=.-..+. ..-+++++.++..|+-+ |-. . ..-|
T Consensus 109 ~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~~~~~~~~~~~T 188 (350)
T PRK09197 109 WIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVDNSHEDNSKLYT 188 (350)
T ss_pred HHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCccccccccccccC
Confidence 677777777 5555433222111 12346677788888654 211 1 1136
Q ss_pred CHHHHHHhhcc--C----CEEE--EEeecCCCC-CCccchhHHHHHHHHHHHhhhc-C---CCCeEEEecC--CChhcHH
Q 023494 177 SLSAIECVLDV--V----DLVL--IMSVNPGFG-GQSFIESQVKKISDLRRMCLEK-G---VNPWIEVDGG--VGPKNAY 241 (281)
Q Consensus 177 ~ie~~~~~l~~--v----D~Il--vmsV~pG~~-GQ~f~~~~l~kI~~lr~l~~~~-~---~~~~I~VDGG--I~~e~i~ 241 (281)
..+...++.+. + |.+. +.++|--+. +.+ .-.+++|+++++.+.++ + .++++..=|| +..|.++
T Consensus 189 dPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p--~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGgSGipde~i~ 266 (350)
T PRK09197 189 QPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNV--KLRPEILKDSQEYVSKKFGLPAKPFDFVFHGGSGSTLEEIR 266 (350)
T ss_pred CHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCC--ccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCCCCCCHHHHH
Confidence 77777777764 4 6644 344542222 211 12366777777776322 1 1478888775 4578999
Q ss_pred HHHHcCCcEEEEccccc
Q 023494 242 KVIEAGANALVAGSAVF 258 (281)
Q Consensus 242 ~~~~aGAD~~VvGSaIf 258 (281)
++++.|+.-+=+++.+.
T Consensus 267 ~ai~~GI~KINi~T~l~ 283 (350)
T PRK09197 267 EAVSYGVVKMNIDTDTQ 283 (350)
T ss_pred HHHHCCCeeEEeCcHHH
Confidence 99999999999998875
|
|
| >COG0107 HisF Imidazoleglycerol-phosphate synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=91.47 E-value=10 Score=34.62 Aligned_cols=189 Identities=21% Similarity=0.270 Sum_probs=102.8
Q ss_pred HHHHHHHHcCCCeE-EEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 74 EQVKAVELAGCDWI-HVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 74 ~~l~~l~~~G~d~i-HiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
+..++..+.|+|.+ -+||--- ..+-..-.++|++.-+...+|+-+-==+...+ -++.++.+|||=|++--.+ ..
T Consensus 34 elA~~Y~e~GADElvFlDItAs--~~gr~~~~~vv~r~A~~vfiPltVGGGI~s~e-D~~~ll~aGADKVSINsaA--v~ 108 (256)
T COG0107 34 ELAKRYNEEGADELVFLDITAS--SEGRETMLDVVERVAEQVFIPLTVGGGIRSVE-DARKLLRAGADKVSINSAA--VK 108 (256)
T ss_pred HHHHHHHHcCCCeEEEEecccc--cccchhHHHHHHHHHhhceeeeEecCCcCCHH-HHHHHHHcCCCeeeeChhH--hc
Confidence 34557778899974 3344321 12222334556665444445554433333333 4667889999999999775 45
Q ss_pred cHHHHHHHHHHcCCcEEE-EECCC--------------------CCH---HHHHHhhcc-CCEEEEEeecC-CCCCCccc
Q 023494 153 HLHRTLNQIKDLGAKAGV-VLNPA--------------------TSL---SAIECVLDV-VDLVLIMSVNP-GFGGQSFI 206 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Gl-ai~p~--------------------t~i---e~~~~~l~~-vD~IlvmsV~p-G~~GQ~f~ 206 (281)
+++-+-+..++.|..+.+ +|... |.+ +..+++-+. +-=|++=+.+- |. .+-|
T Consensus 109 ~p~lI~~~a~~FGsQciVvaIDakr~~~g~~~~~~v~~~gGr~~t~~d~~~Wa~~~e~~GAGEIlLtsmD~DGt-k~Gy- 186 (256)
T COG0107 109 DPELITEAADRFGSQCIVVAIDAKRVPDGENGWYEVFTHGGREDTGLDAVEWAKEVEELGAGEILLTSMDRDGT-KAGY- 186 (256)
T ss_pred ChHHHHHHHHHhCCceEEEEEEeeeccCCCCCcEEEEecCCCcCCCcCHHHHHHHHHHcCCceEEEeeeccccc-ccCc-
Confidence 666566667778877654 33221 112 222222221 33355444432 22 1123
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCCCCHHHHHHHHHHhcCcCcc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYAEAIKGIKTSKRPQAV 279 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a~dp~~~~~~l~~~~~~~~~ 279 (281)
.++.++.+++.+ ++|+..-||.. ++++.++...| ||...+. +||-.. +-.+.++++.++++.+
T Consensus 187 --Dl~l~~~v~~~v-----~iPvIASGGaG~~ehf~eaf~~~~adAaLAA-siFH~~--~~~i~evK~yL~~~gi 251 (256)
T COG0107 187 --DLELTRAVREAV-----NIPVIASGGAGKPEHFVEAFTEGKADAALAA-SIFHFG--EITIGEVKEYLAEQGI 251 (256)
T ss_pred --CHHHHHHHHHhC-----CCCEEecCCCCcHHHHHHHHHhcCccHHHhh-hhhhcC--cccHHHHHHHHHHcCC
Confidence 344445555443 47888899998 88998888777 8866544 455321 1234455555554443
|
|
| >TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E | Back alignment and domain information |
|---|
Probab=91.46 E-value=14 Score=35.63 Aligned_cols=188 Identities=12% Similarity=0.111 Sum_probs=107.6
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcc--ccc--ccC-------------CHHHHHHcCcCCCCCeeEEEEecChh-
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRF--VPN--ITI-------------GPLVVDALRPVTDLPLDVHLMIVEPE- 128 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~f--vpn--~~~-------------G~~~I~~ir~~t~~~idaHLmv~dp~- 128 (281)
.|+..+.-.++.+++.+...| +.+-.|++ ... +.. -..+++.+.+....|+-+||==....
T Consensus 35 ~n~e~~~Avi~AAEe~~sPvI-lq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~ 113 (357)
T TIGR01520 35 TSSSTINAALEAAADVKSPII-IQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKL 113 (357)
T ss_pred CCHHHHHHHHHHHHHhCCCEE-EEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence 344455566677777777765 55544431 110 000 22345555555578999998554333
Q ss_pred -hHHHHHHHcCC---------CEEEEccccc--c----cccHHHHHHHHHHcCCcE----EEE--------EC------C
Q 023494 129 -QRVPDFIKAGA---------DIVSVHCEQS--S----TIHLHRTLNQIKDLGAKA----GVV--------LN------P 174 (281)
Q Consensus 129 -~~i~~~~~aGA---------d~Itvh~Ea~--~----~~~i~~~l~~ik~~G~k~----Gla--------i~------p 174 (281)
.+++.++++|- .+-+++...+ + ...-+++++.++..|+-+ |-. .. .
T Consensus 114 ~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~~~~~~~~~~~ 193 (357)
T TIGR01520 114 LPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGVDNSHMDAEAL 193 (357)
T ss_pred hHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccccc
Confidence 46888888871 1334444332 1 122456777788888654 211 11 1
Q ss_pred CCCHHHHHHhhc------cCCEEE--EEeecCCCC-C-CccchhHHHHHHHHHHHhhhcCCCCe------EEEecC--CC
Q 023494 175 ATSLSAIECVLD------VVDLVL--IMSVNPGFG-G-QSFIESQVKKISDLRRMCLEKGVNPW------IEVDGG--VG 236 (281)
Q Consensus 175 ~t~ie~~~~~l~------~vD~Il--vmsV~pG~~-G-Q~f~~~~l~kI~~lr~l~~~~~~~~~------I~VDGG--I~ 236 (281)
-|..+..+++.+ .+|.+. +.++|--+. + .++. +++|+++++.+.+. .+++ +..=|| +.
T Consensus 194 yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld---~d~L~~I~~~~~~~-~~vP~~~~~pLVLHGgSGi~ 269 (357)
T TIGR01520 194 YTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLT---PDILADGQEYVSEK-LGLPAAKPLFFVFHGGSGST 269 (357)
T ss_pred CCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccC---HHHHHHHHHHHHHh-cCCCcCCCCcEEEeCCCCCC
Confidence 367777778765 468754 455552221 2 2233 55566665443111 1244 877775 45
Q ss_pred hhcHHHHHHcCCcEEEEcccccC
Q 023494 237 PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 237 ~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.++++++.|+.-+=+++.+..
T Consensus 270 ~e~i~kai~~GI~KINi~Tdl~~ 292 (357)
T TIGR01520 270 KQEIKEALSYGVVKMNIDTDTQW 292 (357)
T ss_pred HHHHHHHHHCCCeEEEeCcHHHH
Confidence 78999999999999999988753
|
coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree. |
| >COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.36 Score=47.00 Aligned_cols=97 Identities=20% Similarity=0.267 Sum_probs=67.6
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh---hHHHHHHHcCCCEEEEccccc-
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE---QRVPDFIKAGADIVSVHCEQS- 149 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~---~~i~~~~~aGAd~Itvh~Ea~- 149 (281)
+..+.+.+.|+|+|-+-=|-|-..|+..+ +.|+.||+.++.|+.+|--..-.- .|+ ++.+||+|+|---.-..
T Consensus 160 ~~akel~~~g~DSIciKDmaGlltP~~ay--elVk~iK~~~~~pv~lHtH~TsG~a~m~yl-kAvEAGvD~iDTAisp~S 236 (472)
T COG5016 160 ELAKELLEMGVDSICIKDMAGLLTPYEAY--ELVKAIKKELPVPVELHTHATSGMAEMTYL-KAVEAGVDGIDTAISPLS 236 (472)
T ss_pred HHHHHHHHcCCCEEEeecccccCChHHHH--HHHHHHHHhcCCeeEEecccccchHHHHHH-HHHHhCcchhhhhhcccc
Confidence 44456778899998777777877787654 789999998888888776554322 233 46799999874432211
Q ss_pred ---ccccHHHHHHHHHHcCCcEEEEEC
Q 023494 150 ---STIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 150 ---~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+-+..+..+.+++..|...|+.+.
T Consensus 237 ~gtsqP~tEtmv~aL~gt~yDtgld~~ 263 (472)
T COG5016 237 GGTSQPATETMVAALRGTGYDTGLDLE 263 (472)
T ss_pred CCCCCCcHHHHHHHhcCCCCCccccHH
Confidence 223456677788888999998874
|
|
| >PTZ00300 pyruvate kinase; Provisional | Back alignment and domain information |
|---|
Probab=91.41 E-value=3.6 Score=40.93 Aligned_cols=139 Identities=12% Similarity=0.134 Sum_probs=84.7
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCccc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFI 206 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~ 206 (281)
.++.+.+.|+|+|.+..-. +.+++.++.+.+.+.|..+.+. |.....++.+.++++.+|.|++-.-+-|.. | .
T Consensus 152 dI~~ald~gvd~I~~SfVr-saeDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImVaRGDLgvei~---~ 227 (454)
T PTZ00300 152 DLQFGVEQGVDMIFASFIR-SAEQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIP---A 227 (454)
T ss_pred HHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEEecchhhhhcC---h
Confidence 4667789999999998765 3677888888888777666665 444446688999999999998854333332 2 2
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCC----------Chh---cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGV----------GPK---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI----------~~e---~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+......+++.+.+++.| .++-+.-=+ |.. .+...+--|+|.+.+..-=-.-..|.++++.|.+.
T Consensus 228 e~vp~~Qk~Ii~~~~~~g--kpvI~ATQmLeSM~~~p~PTRAEvsDVanAv~dG~DavMLS~ETA~G~yP~eaV~~m~~I 305 (454)
T PTZ00300 228 EKVVVAQKILISKCNVAG--KPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARI 305 (454)
T ss_pred HHHHHHHHHHHHHHHHcC--CCEEEECchHHHHhhCCCCCchhHHHHHHHHHhCCcEEEEechhcCCCCHHHHHHHHHHH
Confidence 333333344444444433 233332211 111 23334445999998853322235677787777765
Q ss_pred c
Q 023494 274 K 274 (281)
Q Consensus 274 ~ 274 (281)
+
T Consensus 306 ~ 306 (454)
T PTZ00300 306 C 306 (454)
T ss_pred H
Confidence 4
|
|
| >cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm) | Back alignment and domain information |
|---|
Probab=91.29 E-value=5.7 Score=32.72 Aligned_cols=96 Identities=23% Similarity=0.319 Sum_probs=53.7
Q ss_pred HHHHcCCcEEEEECCCCCHHHHHHhh-c-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEecCC-
Q 023494 160 QIKDLGAKAGVVLNPATSLSAIECVL-D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV- 235 (281)
Q Consensus 160 ~ik~~G~k~Glai~p~t~ie~~~~~l-~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDGGI- 235 (281)
.++.+|.++ +.+-...|.|.+.+-. + .+|.|.+-+.. ..++..++++.+++.+++. ++++.|.|++
T Consensus 22 ~L~~~GfeV-idLG~~v~~e~~v~aa~~~~adiVglS~L~---------t~~~~~~~~~~~~l~~~gl~~v~vivGG~~~ 91 (128)
T cd02072 22 AFTEAGFNV-VNLGVLSPQEEFIDAAIETDADAILVSSLY---------GHGEIDCKGLREKCDEAGLKDILLYVGGNLV 91 (128)
T ss_pred HHHHCCCEE-EECCCCCCHHHHHHHHHHcCCCEEEEeccc---------cCCHHHHHHHHHHHHHCCCCCCeEEEECCCC
Confidence 445566655 2333444555444432 2 47888653222 1223344555555555555 6788888875
Q ss_pred -Chhc----HHHHHHcCCcEEEEcccccCC-CCHHHHHHHHH
Q 023494 236 -GPKN----AYKVIEAGANALVAGSAVFGA-KDYAEAIKGIK 271 (281)
Q Consensus 236 -~~e~----i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l~ 271 (281)
..+. ..++.++|+| ++|.. .++.+.+..|+
T Consensus 92 i~~~d~~~~~~~L~~~Gv~------~vf~pgt~~~~i~~~l~ 127 (128)
T cd02072 92 VGKQDFEDVEKRFKEMGFD------RVFAPGTPPEEAIADLK 127 (128)
T ss_pred CChhhhHHHHHHHHHcCCC------EEECcCCCHHHHHHHHh
Confidence 3344 4669999987 44544 46677776665
|
Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains. |
| >PLN02334 ribulose-phosphate 3-epimerase | Back alignment and domain information |
|---|
Probab=91.28 E-value=7.3 Score=34.67 Aligned_cols=129 Identities=12% Similarity=0.066 Sum_probs=71.9
Q ss_pred CeeEEEEecChhh---HHHHHHHcCCCEEEEcccccc-cccHH---HHHHHHHHcC-CcEEEEECCCCCHHHHHHhhc-c
Q 023494 117 PLDVHLMIVEPEQ---RVPDFIKAGADIVSVHCEQSS-TIHLH---RTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-V 187 (281)
Q Consensus 117 ~idaHLmv~dp~~---~i~~~~~aGAd~Itvh~Ea~~-~~~i~---~~l~~ik~~G-~k~Glai~p~t~ie~~~~~l~-~ 187 (281)
.+...++..|+.. .++.+.+.|++++++=..... .+... +.++.+++.. ..+++-+....|...+..+.. .
T Consensus 9 ~i~~s~~~~~~~~l~~~l~~~~~~g~~~ihld~~d~~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~g 88 (229)
T PLN02334 9 IIAPSILSADFANLAEEAKRVLDAGADWLHVDVMDGHFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAG 88 (229)
T ss_pred eEEeehhhcCHHHHHHHHHHHHHcCCCEEEEecccCCcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcC
Confidence 3555566666543 467778889999998644320 11222 5788888874 334776665556665555544 4
Q ss_pred CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-C-hhcHHHHHHcC-CcEEEEcccc
Q 023494 188 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-G-PKNAYKVIEAG-ANALVAGSAV 257 (281)
Q Consensus 188 vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~-~e~i~~~~~aG-AD~~VvGSaI 257 (281)
+|+|.++ .| |.-.......++++++. +..+.+.-.- + .+.+..+.+.| +|.+.+|+--
T Consensus 89 ad~v~vH---~~---q~~~d~~~~~~~~i~~~------g~~iGls~~~~t~~~~~~~~~~~~~~Dyi~~~~v~ 149 (229)
T PLN02334 89 ASIFTFH---IE---QASTIHLHRLIQQIKSA------GMKAGVVLNPGTPVEAVEPVVEKGLVDMVLVMSVE 149 (229)
T ss_pred CCEEEEe---ec---cccchhHHHHHHHHHHC------CCeEEEEECCCCCHHHHHHHHhccCCCEEEEEEEe
Confidence 8988664 33 20111223334443332 3445444431 2 44555555554 9999998643
|
|
| >TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form | Back alignment and domain information |
|---|
Probab=91.27 E-value=9.8 Score=34.93 Aligned_cols=105 Identities=15% Similarity=0.144 Sum_probs=69.1
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-----hHHHHHHHcCCCEEE
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-----QRVPDFIKAGADIVS 143 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-----~~i~~~~~aGAd~It 143 (281)
..++.+.++.|.+.|.|++ .|-|+.---...-...+.+.|++..+++...|+-+.|-. .++..+.++|.+.|.
T Consensus 14 ~~~l~~~~~~l~~~~pd~i--svT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n~~~l~~~L~~~~~~Gi~nvL 91 (272)
T TIGR00676 14 EENLWETVDRLSPLDPDFV--SVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCIGATREEIREILREYRELGIRHIL 91 (272)
T ss_pred HHHHHHHHHHHhcCCCCEE--EeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeecCCCHHHHHHHHHHHHHCCCCEEE
Confidence 4677788888888888885 667762211112233455667765689999999986542 245556889998777
Q ss_pred Ec-cccc---------ccccHHHHHHHHHHc--CCcEEEEECCC
Q 023494 144 VH-CEQS---------STIHLHRTLNQIKDL--GAKAGVVLNPA 175 (281)
Q Consensus 144 vh-~Ea~---------~~~~i~~~l~~ik~~--G~k~Glai~p~ 175 (281)
+. +... ...+..++++.+++. ...+|++.+|.
T Consensus 92 ~l~GD~~~~~~~~~~~~f~~a~~Li~~i~~~~~~f~ig~a~~Pe 135 (272)
T TIGR00676 92 ALRGDPPKGEGTPTPGGFNYASELVEFIRNEFGDFDIGVAAYPE 135 (272)
T ss_pred EeCCCCCCCCCCCCCCCCCCHHHHHHHHHHhcCCeeEEEEeCCC
Confidence 43 2211 113466778888875 57899999876
|
This protein is an FAD-containing flavoprotein. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 281 | ||||
| 1rpx_A | 230 | D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tub | 1e-122 | ||
| 1tqj_A | 230 | Crystal Structure Of D-Ribulose 5-Phosphate 3-Epime | 2e-88 | ||
| 2fli_A | 220 | The Crystal Structure Of D-Ribulose 5-Phosphate 3-E | 4e-52 | ||
| 3inp_A | 246 | 2.05 Angstrom Resolution Crystal Structure Of D-Rib | 4e-45 | ||
| 1h1y_A | 228 | The Structure Of The Cytosolic D-Ribulose-5-Phospha | 6e-39 | ||
| 3ovp_A | 228 | Crystal Structure Of Hrpe Length = 228 | 7e-36 | ||
| 3ct7_A | 231 | Crystal Structure Of D-Allulose 6-Phosphate 3-Epime | 2e-34 | ||
| 1tqx_A | 227 | Crystal Structure Of Pfal009167 A Putative D-Ribulo | 8e-34 | ||
| 3qc3_A | 225 | Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epi | 1e-31 | ||
| 3cu2_A | 237 | Crystal Structure Of Ribulose-5-phosphate 3-epimera | 6e-10 |
| >pdb|1RPX|A Chain A, D-Ribulose-5-Phosphate 3-Epimerase From Solanum Tuberosum Chloroplasts Length = 230 | Back alignment and structure |
|
| >pdb|1TQJ|A Chain A, Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Synechocystis To 1.6 Angstrom Resolution Length = 230 | Back alignment and structure |
|
| >pdb|2FLI|A Chain A, The Crystal Structure Of D-Ribulose 5-Phosphate 3-Epimerase From Streptococus Pyogenes Complexed With D-Xylitol 5- Phosphate Length = 220 | Back alignment and structure |
|
| >pdb|3INP|A Chain A, 2.05 Angstrom Resolution Crystal Structure Of D-Ribulose-Phosphate 3- Epimerase From Francisella Tularensis Length = 246 | Back alignment and structure |
|
| >pdb|1H1Y|A Chain A, The Structure Of The Cytosolic D-Ribulose-5-Phosphate 3- Epimerase From Rice Complexed With Sulfate Length = 228 | Back alignment and structure |
|
| >pdb|3OVP|A Chain A, Crystal Structure Of Hrpe Length = 228 | Back alignment and structure |
|
| >pdb|3CT7|A Chain A, Crystal Structure Of D-Allulose 6-Phosphate 3-Epimerase From Escherichia Coli K-12 Length = 231 | Back alignment and structure |
|
| >pdb|1TQX|A Chain A, Crystal Structure Of Pfal009167 A Putative D-Ribulose 5-Phosphate 3- Epimerase From P.Falciparum Length = 227 | Back alignment and structure |
|
| >pdb|3QC3|A Chain A, Crystal Structure Of A D-Ribulose-5-Phosphate-3-Epimerase (Np_954699) From Homo Sapiens At 2.20 A Resolution Length = 225 | Back alignment and structure |
|
| >pdb|3CU2|A Chain A, Crystal Structure Of Ribulose-5-phosphate 3-epimerase (yp_718263.1) From Haemophilus Somnus 129pt At 1.91 A Resolution Length = 237 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 Length = 230 | Back alignment and structure |
|---|
Score = 429 bits (1105), Expect = e-154
Identities = 209/230 (90%), Positives = 222/230 (96%)
Query: 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV 107
+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVV
Sbjct: 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVV 60
Query: 108 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
D+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAK
Sbjct: 61 DSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
AGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NP
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNP 180
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+
Sbjct: 181 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE 230
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 Length = 230 | Back alignment and structure |
|---|
Score = 418 bits (1078), Expect = e-150
Identities = 151/227 (66%), Positives = 187/227 (82%)
Query: 55 KSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT 114
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 2 SKNIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLT 61
Query: 115 DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP
Sbjct: 62 KKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNP 121
Query: 175 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234
+T L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG
Sbjct: 122 STPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGG 181
Query: 235 VGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQAVAV 281
+ P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRP+
Sbjct: 182 LKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPEPQLA 228
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 Length = 220 | Back alignment and structure |
|---|
Score = 390 bits (1005), Expect = e-139
Identities = 100/218 (45%), Positives = 149/218 (68%), Gaps = 2/218 (0%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD 115
S + ++PSIL+A++A ++ +E +++H+D+MDG+FVPNI+ G VV ++R +
Sbjct: 2 STLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSK 61
Query: 116 LPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175
L D HLM+V+PE+ V F +AGADI+++H E ST H+H L +IK G KAGVV+NP
Sbjct: 62 LVFDCHLMVVDPERYVEAFAQAGADIMTIHTE--STRHIHGALQKIKAAGMKAGVVINPG 119
Query: 176 TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
T +A+E +LD+VD VLIM+VNPGFGGQ+FI ++K++ + + EKG++ IEVDGGV
Sbjct: 120 TPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGV 179
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
K EAGAN VAGS +F A D ++ ++T+
Sbjct: 180 DNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTA 217
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} Length = 246 | Back alignment and structure |
|---|
Score = 388 bits (999), Expect = e-138
Identities = 94/228 (41%), Positives = 135/228 (59%), Gaps = 3/228 (1%)
Query: 47 SARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV 106
+ + I ++PSILSA+ A+LG+ VKAV AG D IH DVMD +VPN+T GP+V
Sbjct: 17 NLYFQSNAMKHIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMV 76
Query: 107 VDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG 165
+ ALR +DVHLM+ + + F KAGA + H E ++ H+ R+L IK G
Sbjct: 77 LKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIVFHPE--ASEHIDRSLQLIKSFG 134
Query: 166 AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV 225
+AG+ LNPAT + ++ V +D VLIMSVNPGFGGQ FI + + K ++ +
Sbjct: 135 IQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDR 194
Query: 226 NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ +E+DGGV P N ++ G NA VAGSA+F + Y + I ++
Sbjct: 195 DILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDE 242
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A Length = 228 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-129
Identities = 86/223 (38%), Positives = 127/223 (56%), Gaps = 8/223 (3%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
+ + ++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR
Sbjct: 3 AAAAAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKH 62
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
T LD HLM+ P V KAGA + H E S + + IK G + GV L
Sbjct: 63 TKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSRD-NWQELIQSIKAKGMRPGVSLR 121
Query: 174 PATSLSAIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230
P T + + +++ V+LVL+M+V PGFGGQ F+ ++K+ LR+ + IE
Sbjct: 122 PGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP----SLDIE 177
Query: 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
VDGG+GP AGAN +VAGS++FGA + E I ++ S
Sbjct: 178 VDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 220
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* Length = 231 | Back alignment and structure |
|---|
Score = 366 bits (942), Expect = e-129
Identities = 67/218 (30%), Positives = 124/218 (56%), Gaps = 4/218 (1%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ +SPS++ + K EQ++ ++ + D+ H+D+MDG FVPN+T+ P V ++ + P
Sbjct: 1 MKISPSLMCMDLLKFKEQIEFID-SHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKP 59
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
LD HLM+ P+ + +AGAD +++H E + R +++I+ K G++LNP T
Sbjct: 60 LDCHLMVTRPQDYIAQLARAGADFITLHPE-TINGQAFRLIDEIRRHDMKVGLILNPETP 118
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+ A++ + D + +M+V+PGF GQ FI + K+++L+ +G+ IEVDG
Sbjct: 119 VEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKAWREREGLEYEIEVDGSCNQ 178
Query: 238 KNAYKVIEAGANALVAGSAVF--GAKDYAEAIKGIKTS 273
K++ AGA+ + G++ A++ EA + +
Sbjct: 179 ATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQ 216
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} PDB: 3ovq_A* 3ovr_A* 3qc3_A Length = 228 | Back alignment and structure |
|---|
Score = 360 bits (926), Expect = e-127
Identities = 84/220 (38%), Positives = 128/220 (58%), Gaps = 8/220 (3%)
Query: 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-- 113
S + PSIL+++ A LG + + +G D++H+DVMDG FVPNIT G VV++LR
Sbjct: 3 SGCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLG 62
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173
D D+H+M+ +PEQ V AGA+ + H E +T + + I++ G K G+ +
Sbjct: 63 QDPFFDMHMMVSKPEQWVKPMAVAGANQYTFHLE--ATENPGALIKDIRENGMKVGLAIK 120
Query: 174 PATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233
P TS+ + + +D+ L+M+V PGFGGQ F+E + K+ LR + IEVDG
Sbjct: 121 PGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFP----SLDIEVDG 176
Query: 234 GVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
GVGP +K EAGAN +V+GSA+ ++D I ++
Sbjct: 177 GVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNV 216
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} Length = 237 | Back alignment and structure |
|---|
Score = 351 bits (903), Expect = e-123
Identities = 53/231 (22%), Positives = 100/231 (43%), Gaps = 16/231 (6%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
+S ILSAN+ +L E+V + + +H D+ DG+F T+G + +
Sbjct: 10 QLKQQKLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFP-- 67
Query: 114 TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--------- 164
T DVHLM+ + + GA++V++ E T+ +
Sbjct: 68 THCFKDVHLMVRNQLEVAKAVVANGANLVTLQLE--QYHDFALTIEWLAKQKTTYANQVY 125
Query: 165 GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG 224
G L P T +S +E LD +D++ +++++P G + E + ++ + + +
Sbjct: 126 PVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGTKYPSELILDRVIQVEKRLGNRR 185
Query: 225 VNPWIEVDGGVGPKNAYKVIEAGANA--LVAGSAVFGAKDYAEAIKGIKTS 273
V I +DG + + A + LV+GSA+F + +K K+S
Sbjct: 186 VEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSS 235
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 Length = 227 | Back alignment and structure |
|---|
Score = 343 bits (881), Expect = e-120
Identities = 78/226 (34%), Positives = 129/226 (57%), Gaps = 13/226 (5%)
Query: 54 SKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV 113
I++PS+L++N +KL E+ + +E G +WIH+DVMD FVPN++ GP V++ L+
Sbjct: 2 GTLKAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKY 61
Query: 114 T-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTL---NQIKDLGAKAG 169
T + DVHLM+ PE+ VP ++ ++ H E + R + +I+D G
Sbjct: 62 TKSIFFDVHLMVEYPEKYVPLL--KTSNQLTFHFE-ALNEDTERCIQLAKEIRDNNLWCG 118
Query: 170 VVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
+ + P T + + +LD +++ VL+M+V PGFGGQSF+ + K+S LR+ N
Sbjct: 119 ISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK----NL 174
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
I+VDGG+ + GAN +VAG+++F A+D I ++ S
Sbjct: 175 NIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVS 220
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} PDB: 3exs_A* 3ext_A Length = 221 | Back alignment and structure |
|---|
Score = 122 bits (306), Expect = 6e-34
Identities = 36/216 (16%), Positives = 74/216 (34%), Gaps = 15/216 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + + L + A G VDV++ V + +G +V+ LR + D +
Sbjct: 9 QVALDHSNLKGAITAAVSVGN---EVDVIEAGTVCLLQVGSELVEVLRSLFPDKIIVADT 65
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCE--QSSTIHLHRTLNQIKDLGAKAGV-VLNPATSL 178
+ V GAD ++ C + + + I + V + T
Sbjct: 66 KCADAGGTVAKNNAVRGADWMTCICSATIPTMKAARKAIEDINPDKGEIQVELYGDWTYD 125
Query: 179 SAIECVLDVVDLVLI-MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
A + + + + S + G+++ E + K+ L + + V GG+
Sbjct: 126 QAQQWLDAGISQAIYHQSRDALLAGETWGEKDLNKVKKLI------EMGFRVSVTGGLSV 179
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+AG + AK+ A A + K
Sbjct: 180 DTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDE 215
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} Length = 207 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 8e-33
Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 12/212 (5%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + ++ +VD+++ G V+ A++ D + +
Sbjct: 4 QVAIDLLSTEAALELAGKVAE---YVDIIELGTPLIKAEGLSVITAVKKAHPDKIVFADM 60
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
++ + D KAGAD+V+V + + + + V L +
Sbjct: 61 KTMDAGELEADIAFKAGADLVTVLGS-ADDSTIAGAVKAAQAHNKGVVVDLIGIEDKATR 119
Query: 182 ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241
+ + + ++ G Q+ + + + V GGV
Sbjct: 120 AQEVRALG-AKFVEMHAGLDEQAKPGFDLNGLLAAG-----EKARVPFSVAGGVKVATIP 173
Query: 242 KVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
V +AGA VAG A++GA D A A K ++ +
Sbjct: 174 AVQKAGAEVAVAGGAIYGAADPAAAAKELRAA 205
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* Length = 216 | Back alignment and structure |
|---|
Score = 118 bits (296), Expect = 2e-32
Identities = 34/201 (16%), Positives = 70/201 (34%), Gaps = 11/201 (5%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPD-F 134
A E VD+++ + + G V L+ + + I + + +
Sbjct: 17 SAYETTRLIAEEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMC 76
Query: 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLI 193
+A AD V+V C + L+ K+ + L + A + + V+
Sbjct: 77 FEANADWVTVIC-CADINTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVY 135
Query: 194 -MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALV 252
S + G ++ E+ + I L + + V GG+ ++ + +
Sbjct: 136 HRSRDAQAAGVAWGEADITAIKRLS------DMGFKVTVTGGLALEDLPLFKGIPIHVFI 189
Query: 253 AGSAVFGAKDYAEAIKGIKTS 273
AG ++ A EA + K S
Sbjct: 190 AGRSIRDAASPVEAARQFKRS 210
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} PDB: 3ieb_A* Length = 218 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 8e-31
Identities = 31/209 (14%), Positives = 71/209 (33%), Gaps = 14/209 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
++ + L + V +VDV++ + G V LR + L +
Sbjct: 10 QIALDQTNLTDAVAVASNVAS---YVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDM 66
Query: 123 MIVEPEQRV-PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
+ + +AGAD ++V + + +L + + + ++
Sbjct: 67 KTTDGGAILSRMAFEAGADWITVSAA-AHIATIAACKKVADELNGEIQIEIYGNWTMQDA 125
Query: 182 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+ +D + + S + G + + K+ L + + + GG+ P++
Sbjct: 126 KAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQL------SALGIELSITGGIVPED 179
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIK 268
Y +AG A+ GA+ A
Sbjct: 180 IYLFEGIKTKTFIAGRALAGAEGQQTAAA 208
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} Length = 211 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 3e-26
Identities = 33/213 (15%), Positives = 77/213 (36%), Gaps = 13/213 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHL 122
L+ + L E + ++ VD+++ I G + A++ +
Sbjct: 4 QLALDELTLPEAMVFMDKVV---DDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADA 60
Query: 123 MIVEPEQRVPD-FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSA 180
I++ AGAD V+V + + + + K+ G + V ++ +
Sbjct: 61 KIMDGGHFESQLLFDAGADYVTVLGV-TDVLTIQSCIRAAKEAGKQVVVDMICVDDLPAR 119
Query: 181 IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 240
+ + + +++V+ G Q+ + + + ++ I V GG+ +
Sbjct: 120 VRLLEEAG--ADMLAVHTGTDQQAAGRKPIDDLITMLKVRR----KARIAVAGGISSQTV 173
Query: 241 YKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
G + ++ GSA+ A D A + I
Sbjct: 174 KDYALLGPDVVIVGSAITHAADPAGEARKISQV 206
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 Length = 223 | Back alignment and structure |
|---|
Score = 42.6 bits (100), Expect = 5e-05
Identities = 30/208 (14%), Positives = 66/208 (31%), Gaps = 31/208 (14%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEP 127
A G I + + A++ DLP+ + I
Sbjct: 30 LAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITAT 77
Query: 128 EQRVPDFIKAGADIVSVHC--EQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL 185
+ V + I++ +++++ +Q L ++ I+ ++ + AT A
Sbjct: 78 SKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAAR 137
Query: 186 DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244
D + Q + Q L+ + I +G V P +V+
Sbjct: 138 LGFDYIGTTLHGYTSYTQGQLLYQND-FQFLKDVLQSVDA-KVI-AEGNVITPDMYKRVM 194
Query: 245 EAGANALVAGSAVFG----AKDYAEAIK 268
+ G + V G A+ K + + ++
Sbjct: 195 DLGVHCSVVGGAITRPKEITKRFVQVME 222
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 Length = 215 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 5e-04
Identities = 13/39 (33%), Positives = 24/39 (61%)
Query: 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
GG+ NA +V++ G + + SAV GA+D +A + ++
Sbjct: 169 GGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELR 207
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} Length = 232 | Back alignment and structure |
|---|
Score = 39.3 bits (91), Expect = 7e-04
Identities = 35/207 (16%), Positives = 67/207 (32%), Gaps = 36/207 (17%)
Query: 77 KAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEP 127
A E AG + ++ G + R + +P+ + + I
Sbjct: 43 LAAEQAGAVAVRIE------------GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPF 90
Query: 128 EQRVPDFIKAGADIVSVHCEQSST-IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD 186
V +AGA I++V + + L +I ++ + C
Sbjct: 91 LDDVDALAQAGAAIIAVDGTARQRPVAVEALLARIHHHHLLTMADC--SSVDDGLACQRL 148
Query: 187 VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIE 245
D++ G + ++ + L + + G I +G P A + I
Sbjct: 149 GADII-----GTTMSGYTTPDTPEEPDLPLVKALHDAGC-RVI-AEGRYNSPALAAEAIR 201
Query: 246 AGANALVAGSAVFG----AKDYAEAIK 268
GA A+ GSA+ Y +A+K
Sbjct: 202 YGAWAVTVGSAITRLEHICGWYNDALK 228
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 100.0 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 100.0 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 100.0 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 100.0 | |
| 3cu2_A | 237 | Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib | 100.0 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 100.0 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 100.0 | |
| 1rpx_A | 230 | Protein (ribulose-phosphate 3-epimerase); chloropl | 100.0 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 100.0 | |
| 2czd_A | 208 | Orotidine 5'-phosphate decarboxylase; pyrimidine b | 100.0 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 100.0 | |
| 1q6o_A | 216 | Humps, 3-keto-L-gulonate 6-phosphate decarboxylase | 100.0 | |
| 1eix_A | 245 | Orotidine 5'-monophosphate decarboxylase; alpha-be | 99.98 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 99.98 | |
| 3ajx_A | 207 | 3-hexulose-6-phosphate synthase; HPS, OMPDC supraf | 99.97 | |
| 2yyu_A | 246 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 99.97 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 99.97 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 99.97 | |
| 1dbt_A | 239 | Orotidine 5'-phosphate decarboxylase; UMP, TIM bar | 99.97 | |
| 3exr_A | 221 | RMPD (hexulose-6-phosphate synthase); beta barrel, | 99.97 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 99.95 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 99.94 | |
| 3m47_A | 228 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 99.9 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 99.88 | |
| 1yad_A | 221 | Regulatory protein TENI; TIM barrel, transcription | 99.87 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 99.86 | |
| 1xi3_A | 215 | Thiamine phosphate pyrophosphorylase; structural g | 99.83 | |
| 2tps_A | 227 | Protein (thiamin phosphate synthase); thiamin bios | 99.82 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.82 | |
| 1y0e_A | 223 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 99.81 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 99.8 | |
| 2v82_A | 212 | 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l | 99.8 | |
| 3nl6_A | 540 | Thiamine biosynthetic bifunctional enzyme; thiamin | 99.79 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 99.78 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 99.78 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 99.77 | |
| 3o63_A | 243 | Probable thiamine-phosphate pyrophosphorylase; thi | 99.75 | |
| 3ru6_A | 303 | Orotidine 5'-phosphate decarboxylase; structural g | 99.75 | |
| 3tha_A | 252 | Tryptophan synthase alpha chain; structural genomi | 99.7 | |
| 1ujp_A | 271 | Tryptophan synthase alpha chain; riken structural | 99.64 | |
| 3ldv_A | 255 | Orotidine 5'-phosphate decarboxylase; structural g | 99.62 | |
| 3tfx_A | 259 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 99.61 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.58 | |
| 3tr2_A | 239 | Orotidine 5'-phosphate decarboxylase; purines, pyr | 99.58 | |
| 1vqt_A | 213 | Orotidine 5'-phosphate decarboxylase; TM0332, stru | 99.58 | |
| 2yw3_A | 207 | 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox | 99.57 | |
| 2h6r_A | 219 | Triosephosphate isomerase; beta-alpha barrel; 2.30 | 99.57 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 99.55 | |
| 4dbe_A | 222 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 99.51 | |
| 3iwp_A | 287 | Copper homeostasis protein CUTC homolog; conserved | 99.5 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 99.49 | |
| 3ve9_A | 215 | Orotidine-5'-phosphate decarboxylase; TIM barrel f | 99.49 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 99.47 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 99.45 | |
| 1vhc_A | 224 | Putative KHG/KDPG aldolase; structural genomics, u | 99.33 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 99.33 | |
| 1wbh_A | 214 | KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} | 99.32 | |
| 2gjl_A | 328 | Hypothetical protein PA1024; 2-nitropropane dioxyg | 99.32 | |
| 1mxs_A | 225 | KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a | 99.32 | |
| 3eww_A | 260 | Ompdecase, orotidine-5'-phosphate decarboxylase; T | 99.3 | |
| 1xm3_A | 264 | Thiazole biosynthesis protein THIG; structural gen | 99.28 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 99.26 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 99.25 | |
| 1viz_A | 240 | PCRB protein homolog; structural genomics, unknown | 99.22 | |
| 3bo9_A | 326 | Putative nitroalkan dioxygenase; TM0800, structura | 99.2 | |
| 4adt_A | 297 | Pyridoxine biosynthetic enzyme PDX1 homologue, PU; | 99.19 | |
| 3ceu_A | 210 | Thiamine phosphate pyrophosphorylase; TIM barrel-l | 99.17 | |
| 2nv1_A | 305 | Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-b | 99.16 | |
| 3g3d_A | 312 | UMP synthase, uridine 5'-monophosphate synthase; C | 99.14 | |
| 4e38_A | 232 | Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho | 99.14 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 99.14 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 99.14 | |
| 1i4n_A | 251 | Indole-3-glycerol phosphate synthase; thermostable | 99.12 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 99.1 | |
| 2z6i_A | 332 | Trans-2-enoyl-ACP reductase II; fatty acid synthes | 99.09 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 99.09 | |
| 3gdm_A | 267 | Orotidine 5'-phosphate decarboxylase; orotidine 5' | 99.05 | |
| 3bw2_A | 369 | 2-nitropropane dioxygenase; TIM barrel, oxidoreduc | 99.03 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 99.0 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 98.98 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 98.96 | |
| 3lab_A | 217 | Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) | 98.95 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 98.85 | |
| 2yzr_A | 330 | Pyridoxal biosynthesis lyase PDXS; redox protein, | 98.83 | |
| 2qjg_A | 273 | Putative aldolase MJ0400; beta-alpha barrel, lyase | 98.82 | |
| 1to3_A | 304 | Putative aldolase YIHT; beta-alpha barrel, structu | 98.76 | |
| 1w8s_A | 263 | FBP aldolase, fructose-bisphosphate aldolase class | 98.76 | |
| 3o07_A | 291 | Pyridoxine biosynthesis protein SNZ1; (beta/alpha) | 98.73 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 98.69 | |
| 3qw3_A | 255 | Orotidine-5-phosphate decarboxylase/orotate phosph | 98.66 | |
| 2ffc_A | 353 | Orotidine 5-monophosphate decarboxylase; PV-PF10_0 | 98.64 | |
| 4a29_A | 258 | Engineered retro-aldol enzyme RA95.0; de novo prot | 98.59 | |
| 3qw4_B | 453 | UMP synthase; N-terminal orotidine monophosphate d | 98.57 | |
| 1wv2_A | 265 | Thiazole moeity, thiazole biosynthesis protein THI | 98.51 | |
| 2fds_A | 352 | Orotidine-monophosphate-decarboxylase; TIM barrel, | 98.48 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.47 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 98.45 | |
| 2htm_A | 268 | Thiazole biosynthesis protein THIG; thiamin biosyn | 98.43 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 98.4 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 98.38 | |
| 1nvm_A | 345 | HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered | 98.33 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 98.32 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 98.28 | |
| 2bdq_A | 224 | Copper homeostasis protein CUTC; alpha beta protei | 98.28 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 98.27 | |
| 1twd_A | 256 | Copper homeostasis protein CUTC; TIM-like protein, | 98.21 | |
| 1hg3_A | 225 | Triosephosphate isomerase; thermostability, tetram | 98.21 | |
| 1qpo_A | 284 | Quinolinate acid phosphoribosyl transferase; type | 98.17 | |
| 3vk5_A | 286 | MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {S | 98.17 | |
| 2p10_A | 286 | MLL9387 protein; putative phosphonopyruvate hydrol | 98.17 | |
| 1o4u_A | 285 | Type II quinolic acid phosphoribosyltransferase; s | 98.17 | |
| 1w0m_A | 226 | TIM, triosephosphate isomerase; glycolysis, glucon | 98.14 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 98.14 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 98.13 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 98.12 | |
| 1nsj_A | 205 | PRAI, phosphoribosyl anthranilate isomerase; therm | 98.11 | |
| 1v5x_A | 203 | PRA isomerase, phosphoribosylanthranilate isomeras | 98.1 | |
| 3glc_A | 295 | Aldolase LSRF; TIM barrel, lyase, schiff base; HET | 98.1 | |
| 2b7n_A | 273 | Probable nicotinate-nucleotide pyrophosphorylase; | 98.09 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 98.08 | |
| 4ef8_A | 354 | Dihydroorotate dehydrogenase; phenyl isothiocyanat | 98.08 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 98.05 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 98.05 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 98.04 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 98.03 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 98.02 | |
| 3n3m_A | 342 | Orotidine 5'-phosphate decarboxylase; P. falciparu | 97.96 | |
| 2jbm_A | 299 | Nicotinate-nucleotide pyrophosphorylase; NAD, enzy | 97.96 | |
| 3oix_A | 345 | Putative dihydroorotate dehydrogenase; dihydrooro | 97.93 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 97.93 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 97.91 | |
| 3zwt_A | 367 | Dihydroorotate dehydrogenase (quinone), mitochond; | 97.88 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 97.86 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 97.84 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 97.83 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 97.81 | |
| 1dxe_A | 256 | 2-dehydro-3-deoxy-galactarate aldolase; class II a | 97.81 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 97.8 | |
| 1x1o_A | 286 | Nicotinate-nucleotide pyrophosphorylase; transfera | 97.79 | |
| 4aaj_A | 228 | N-(5'-phosphoribosyl)anthranilate isomerase; alpha | 97.78 | |
| 2cw6_A | 298 | Hydroxymethylglutaryl-COA lyase, mitochondrial; HM | 97.75 | |
| 1me8_A | 503 | Inosine-5'-monophosphate dehydrogenase; alpha beta | 97.75 | |
| 3i65_A | 415 | Dihydroorotate dehydrogenase homolog, mitochondria | 97.74 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 97.73 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 97.73 | |
| 3qz6_A | 261 | HPCH/HPAI aldolase; structural genomics, PSI-biolo | 97.66 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 97.64 | |
| 1ydo_A | 307 | HMG-COA lyase; TIM-barrel protein, structural geno | 97.62 | |
| 2uva_G | 2060 | Fatty acid synthase beta subunits; fungal, dehydra | 97.61 | |
| 3c2e_A | 294 | Nicotinate-nucleotide pyrophosphorylase; qprtase, | 97.57 | |
| 2vws_A | 267 | YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escher | 97.56 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 97.53 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 97.51 | |
| 2v5j_A | 287 | 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; l | 97.5 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 97.5 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 97.5 | |
| 3ble_A | 337 | Citramalate synthase from leptospira interrogans; | 97.49 | |
| 3l0g_A | 300 | Nicotinate-nucleotide pyrophosphorylase; ssgcid, N | 97.49 | |
| 2nzl_A | 392 | Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, G | 97.47 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 97.46 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 97.43 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 97.41 | |
| 3sgz_A | 352 | Hydroxyacid oxidase 2; flavoprotein, homology, INH | 97.4 | |
| 1qap_A | 296 | Quinolinic acid phosphoribosyltransferase; glycosy | 97.4 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 97.38 | |
| 3gnn_A | 298 | Nicotinate-nucleotide pyrophosphorylase; decode bi | 97.36 | |
| 3tqv_A | 287 | Nicotinate-nucleotide pyrophosphorylase; glycosylt | 97.36 | |
| 3sr7_A | 365 | Isopentenyl-diphosphate delta-isomerase; isopenten | 97.35 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 97.35 | |
| 2nx9_A | 464 | Oxaloacetate decarboxylase 2, subunit alpha; carbo | 97.33 | |
| 2nli_A | 368 | Lactate oxidase; flavoenzyme, FMN, D-lactate, oxid | 97.3 | |
| 1gox_A | 370 | (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoredu | 97.29 | |
| 3m9y_A | 254 | Triosephosphate isomerase; TIM barrel, glycolysis, | 97.29 | |
| 3zen_D | 3089 | Fatty acid synthase; transferase, mycolic acid bio | 97.29 | |
| 1yya_A | 250 | Triosephosphate isomerase; riken structural genomi | 97.23 | |
| 3dxi_A | 320 | Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX | 97.22 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 97.2 | |
| 1rqb_A | 539 | Transcarboxylase 5S subunit; TIM-barrel, carbamyla | 97.2 | |
| 1pii_A | 452 | N-(5'phosphoribosyl)anthranilate isomerase; bifunc | 97.19 | |
| 2btm_A | 252 | TIM, protein (triosephosphate isomerase); thermoph | 97.18 | |
| 4ab4_A | 362 | Xenobiotic reductase B; oxidoreductase, OLD yellow | 97.15 | |
| 2j27_A | 250 | Triosephosphate isomerase glycosomal; TIM, 2PG, LO | 97.14 | |
| 1p4c_A | 380 | L(+)-mandelate dehydrogenase; TIM barrel, hydroxy | 97.12 | |
| 4gj1_A | 243 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 97.11 | |
| 3kru_A | 343 | NADH:flavin oxidoreductase/NADH oxidase; homotetra | 97.11 | |
| 1o5x_A | 248 | TIM, triosephosphate isomerase; 2- phosphoglycerat | 97.09 | |
| 1vcf_A | 332 | Isopentenyl-diphosphate delta-isomerase; TIM barre | 97.08 | |
| 3iix_A | 348 | Biotin synthetase, putative; adoMet radical, SAM r | 97.07 | |
| 3tjx_A | 354 | Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh | 97.07 | |
| 1kbi_A | 511 | Cytochrome B2, L-LCR; flavocytochrome B2, electron | 97.06 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 97.05 | |
| 3paj_A | 320 | Nicotinate-nucleotide pyrophosphorylase, carboxyl; | 97.03 | |
| 1aw2_A | 256 | Triosephosphate isomerase; psychrophilic, vibrio m | 97.01 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 97.0 | |
| 2ztj_A | 382 | Homocitrate synthase; (beta/alpha)8 TIM barrel, su | 96.93 | |
| 1vkf_A | 188 | Glycerol uptake operon antiterminator-related Pro; | 96.91 | |
| 1ps9_A | 671 | 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel | 96.9 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 96.87 | |
| 3aty_A | 379 | Tcoye, prostaglandin F2A synthase; alpha/beta barr | 96.86 | |
| 2yc6_A | 257 | Triosephosphate isomerase; glycolysis; HET: PGA; 1 | 96.83 | |
| 2hsa_B | 402 | 12-oxophytodienoate reductase 3; alpha beta 8 barr | 96.82 | |
| 1mo0_A | 275 | TIM, triosephosphate isomerase; structural genomic | 96.74 | |
| 3sy1_A | 245 | UPF0001 protein YGGS; engineered protein, structur | 96.73 | |
| 3r89_A | 290 | Orotidine 5'-phosphate decarboxylase; PSI-biology, | 96.67 | |
| 2vxn_A | 251 | Triosephosphate isomerase; fatty acid biosynthesis | 96.66 | |
| 1tre_A | 255 | Triosephosphate isomerase; intramolecular oxidored | 96.65 | |
| 3bg3_A | 718 | Pyruvate carboxylase, mitochondrial; TIM barrel, A | 96.63 | |
| 1icp_A | 376 | OPR1, 12-oxophytodienoate reductase 1; beta-alpha- | 96.62 | |
| 3tdn_A | 247 | FLR symmetric alpha-beta TIM barrel; symmetric sup | 96.59 | |
| 1b9b_A | 255 | TIM, protein (triosephosphate isomerase); thermoph | 96.55 | |
| 2jgq_A | 233 | Triosephosphate isomerase; glycolysis, pentose shu | 96.53 | |
| 2zbt_A | 297 | Pyridoxal biosynthesis lyase PDXS; pyridoxine bios | 96.5 | |
| 2i9e_A | 259 | Triosephosphate isomerase; 2.00A {Tenebrio molitor | 96.49 | |
| 1r2r_A | 248 | TIM, triosephosphate isomerase; closed loop confor | 96.47 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 96.46 | |
| 2agk_A | 260 | 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me | 96.38 | |
| 3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; st | 96.33 | |
| 3ewb_X | 293 | 2-isopropylmalate synthase; LEUA, structural genom | 96.33 | |
| 3krs_A | 271 | Triosephosphate isomerase; ssgcid, SBRI, emerald b | 96.3 | |
| 3ta6_A | 267 | Triosephosphate isomerase; HET: FLC; 1.41A {Mycoba | 96.15 | |
| 3s6d_A | 310 | Putative triosephosphate isomerase; seattle struct | 96.09 | |
| 3qst_A | 255 | Triosephosphate isomerase, putative; TIM barrel; 1 | 96.05 | |
| 1m6j_A | 261 | TIM, TPI, triosephosphate isomerase; asymmetry, mo | 96.01 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 96.01 | |
| 3p6l_A | 262 | Sugar phosphate isomerase/epimerase; TIM barrel, s | 95.96 | |
| 2yr1_A | 257 | 3-dehydroquinate dehydratase; amino acid biosynthe | 95.94 | |
| 1wa3_A | 205 | 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, | 95.92 | |
| 3o1n_A | 276 | 3-dehydroquinate dehydratase; structural genomics, | 95.89 | |
| 1izc_A | 339 | Macrophomate synthase intermolecular diels-aldera; | 95.87 | |
| 1ep3_A | 311 | Dihydroorotate dehydrogenase B (PYRD subunit); het | 95.86 | |
| 1r30_A | 369 | Biotin synthase; SAM radical protein, TIM barrel, | 95.84 | |
| 1ney_A | 247 | TIM, triosephosphate isomerase; yeast, DHAP, dihyd | 95.81 | |
| 4g1k_A | 272 | Triosephosphate isomerase; structural genomics, se | 95.77 | |
| 1jvn_A | 555 | Glutamine, bifunctional histidine biosynthesis pro | 95.72 | |
| 3ivs_A | 423 | Homocitrate synthase, mitochondrial; TIM barrel, m | 95.7 | |
| 1ka9_F | 252 | Imidazole glycerol phosphtate synthase; riken stru | 95.66 | |
| 3t7v_A | 350 | Methylornithine synthase PYLB; TIM-barrel fold, mu | 95.64 | |
| 3eeg_A | 325 | 2-isopropylmalate synthase; 11106D, beta barrel, P | 95.61 | |
| 1thf_D | 253 | HISF protein; thermophIle, TIM-barrel, histidine b | 95.6 | |
| 3kxq_A | 275 | Triosephosphate isomerase; ssgcid, NIH, niaid, SBR | 95.6 | |
| 2uv8_G | 2051 | Fatty acid synthase subunit beta (FAS1); fatty aci | 95.45 | |
| 3b0p_A | 350 | TRNA-dihydrouridine synthase; TIM barrel, oxidored | 95.43 | |
| 2y88_A | 244 | Phosphoribosyl isomerase A; aromatic amino acid bi | 95.42 | |
| 1vzw_A | 244 | Phosphoribosyl isomerase A; histidine biosynthesis | 95.35 | |
| 1ub3_A | 220 | Aldolase protein; schiff base, deoxyribose phospha | 95.35 | |
| 3th6_A | 249 | Triosephosphate isomerase; alpha/beta barrel, embr | 95.33 | |
| 2v5b_A | 244 | Triosephosphate isomerase; TIM, unfolding, monotct | 95.32 | |
| 1o94_A | 729 | Tmadh, trimethylamine dehydrogenase; electron tran | 95.27 | |
| 2cu0_A | 486 | Inosine-5'-monophosphate dehydrogenase; structural | 95.25 | |
| 1f6y_A | 262 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 95.23 | |
| 2w6r_A | 266 | Imidazole glycerol phosphate synthase subunit HISF | 95.23 | |
| 3fok_A | 307 | Uncharacterized protein CGL0159; CGL0159 ,brevibac | 95.21 | |
| 2qr6_A | 393 | IMP dehydrogenase/GMP reductase; NP_599840.1, G re | 95.19 | |
| 2qf7_A | 1165 | Pyruvate carboxylase protein; multi-domain, multi- | 95.17 | |
| 3k30_A | 690 | Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP bi | 95.16 | |
| 4a3u_A | 358 | NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET | 95.12 | |
| 2h9a_A | 445 | Carbon monoxide dehydrogenase corrinoid/iron- sulf | 95.12 | |
| 3iv3_A | 332 | Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p | 95.08 | |
| 1gvf_A | 286 | Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; | 95.06 | |
| 4djd_D | 323 | C/Fe-SP, corrinoid/iron-sulfur protein small subun | 95.0 | |
| 1sfl_A | 238 | 3-dehydroquinate dehydratase; 3-dehydroquinase, en | 94.94 | |
| 3oa3_A | 288 | Aldolase; structural genomics, seattle structural | 94.91 | |
| 3r79_A | 244 | Uncharacterized protein; PSI-biology, structural g | 94.9 | |
| 3rmj_A | 370 | 2-isopropylmalate synthase; LEUA, truncation, neis | 94.77 | |
| 3lmz_A | 257 | Putative sugar isomerase; structural genomics, joi | 94.76 | |
| 3tjl_A | 407 | NADPH dehydrogenase; OLD yellow enzyme, flavin mon | 94.7 | |
| 2yci_X | 271 | 5-methyltetrahydrofolate corrinoid/iron sulfur PR | 94.67 | |
| 3rlg_A | 302 | Sphingomyelin phosphodiesterase D lisictox-alphai; | 94.66 | |
| 3khj_A | 361 | Inosine-5-monophosphate dehydrogenase; enzyme-inhi | 94.62 | |
| 1q7z_A | 566 | 5-methyltetrahydrofolate S-homocysteine methyltran | 94.57 | |
| 1qo2_A | 241 | Molecule: N-((5-phosphoribosyl)-formimino)-5-amino | 94.53 | |
| 2hwg_A | 575 | Phosphoenolpyruvate-protein phosphotransferase; en | 94.48 | |
| 1h5y_A | 253 | HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py | 94.46 | |
| 3n9r_A | 307 | Fructose-bisphosphate aldolase; FBP aldolase, clas | 94.29 | |
| 1mzh_A | 225 | Deoxyribose-phosphate aldolase; alpha-beta barrel, | 94.26 | |
| 3nvt_A | 385 | 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; | 94.2 | |
| 4fo4_A | 366 | Inosine 5'-monophosphate dehydrogenase; structural | 94.09 | |
| 2xz9_A | 324 | Phosphoenolpyruvate-protein kinase (PTS system EI | 94.01 | |
| 3hbl_A | 1150 | Pyruvate carboxylase; TIM barrel, ligase; HET: BTI | 93.97 | |
| 2isw_A | 323 | Putative fructose-1,6-bisphosphate aldolase; class | 93.87 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 93.85 | |
| 3q94_A | 288 | Fructose-bisphosphate aldolase, class II; structur | 93.72 | |
| 3k13_A | 300 | 5-methyltetrahydrofolate-homocysteine methyltrans; | 93.7 | |
| 3gr7_A | 340 | NADPH dehydrogenase; flavin, FMN, beta-alpha-barre | 93.69 | |
| 2i1o_A | 398 | Nicotinate phosphoribosyltransferase; ZIN ION, zin | 93.68 | |
| 4h3d_A | 258 | 3-dehydroquinate dehydratase; structural genomics, | 93.59 | |
| 1jub_A | 311 | Dihydroorotate dehydrogenase A; homodimer, alpha-b | 93.54 | |
| 4fxs_A | 496 | Inosine-5'-monophosphate dehydrogenase; structural | 93.42 | |
| 1ct5_A | 256 | Protein (yeast hypothetical protein, selenoMet); T | 93.42 | |
| 1ea0_A | 1479 | Glutamate synthase [NADPH] large chain; oxidoreduc | 93.21 | |
| 2pgw_A | 384 | Muconate cycloisomerase; enolase superfamily, octa | 93.13 | |
| 3tr9_A | 314 | Dihydropteroate synthase; biosynthesis of cofactor | 93.01 | |
| 3gk0_A | 278 | PNP synthase, pyridoxine 5'-phosphate synthase; de | 92.98 | |
| 3aam_A | 270 | Endonuclease IV, endoiv; DNA repair, base excision | 92.63 | |
| 2yxb_A | 161 | Coenzyme B12-dependent mutase; alpha/beta, structu | 92.63 | |
| 3hgj_A | 349 | Chromate reductase; TIM barrel, oxidoreductase; HE | 92.62 | |
| 1eye_A | 280 | DHPS 1, dihydropteroate synthase I; alpha-beta bar | 92.57 | |
| 2oz8_A | 389 | MLL7089 protein; structural genomics, unknown func | 92.48 | |
| 4avf_A | 490 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 92.43 | |
| 1m5w_A | 243 | Pyridoxal phosphate biosynthetic protein PDXJ; TIM | 92.36 | |
| 3ngj_A | 239 | Deoxyribose-phosphate aldolase; lyase, structural | 92.31 | |
| 1zco_A | 262 | 2-dehydro-3-deoxyphosphoheptonate aldolase; arabin | 92.27 | |
| 3usb_A | 511 | Inosine-5'-monophosphate dehydrogenase; structural | 92.26 | |
| 3ndo_A | 231 | Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid | 92.25 | |
| 3cny_A | 301 | Inositol catabolism protein IOLE; xylose isomerase | 92.23 | |
| 1aj0_A | 282 | DHPS, dihydropteroate synthase; antibiotic, resist | 92.22 | |
| 1rvg_A | 305 | Fructose-1,6-bisphosphate aldolase; class II aldol | 92.14 | |
| 1yx1_A | 264 | Hypothetical protein PA2260; structural genomics, | 92.12 | |
| 2wqd_A | 572 | Phosphoenolpyruvate-protein phosphotransferase; ki | 92.07 | |
| 1tx2_A | 297 | DHPS, dihydropteroate synthase; folate biosynthesi | 92.05 | |
| 3qja_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 92.05 | |
| 4djd_C | 446 | C/Fe-SP, corrinoid/iron-sulfur protein large subun | 92.05 | |
| 3kws_A | 287 | Putative sugar isomerase; structural genomics, joi | 92.0 | |
| 3noy_A | 366 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 91.99 | |
| 1ofd_A | 1520 | Ferredoxin-dependent glutamate synthase 2; oxidore | 91.96 | |
| 2og9_A | 393 | Mandelate racemase/muconate lactonizing enzyme; NY | 91.95 | |
| 3l52_A | 284 | Orotidine 5'-phosphate decarboxylase; TIM barrel, | 91.9 | |
| 2ovl_A | 371 | Putative racemase; structural genomics, PSI-2, pro | 91.72 | |
| 1n7k_A | 234 | Deoxyribose-phosphate aldolase; A.pernix, tetramer | 91.67 | |
| 1mdl_A | 359 | Mandelate racemase; isomerase, mandelate pathway, | 91.62 | |
| 2dqw_A | 294 | Dihydropteroate synthase; dimer, structural genomi | 91.53 | |
| 1z41_A | 338 | YQJM, probable NADH-dependent flavin oxidoreductas | 91.44 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 91.35 | |
| 1xg4_A | 295 | Probable methylisocitrate lyase; 2-methylisocitrat | 91.33 | |
| 3p3b_A | 392 | Mandelate racemase/muconate lactonizing protein; e | 91.3 | |
| 1vcv_A | 226 | Probable deoxyribose-phosphate aldolase; DERA, hyp | 91.26 | |
| 2e6f_A | 314 | Dihydroorotate dehydrogenase; chagas disease, pyri | 91.24 | |
| 3dx5_A | 286 | Uncharacterized protein ASBF; beta-alpha barrel, p | 91.17 | |
| 1ypf_A | 336 | GMP reductase; GUAC, purines, pyrimidines, nucleos | 91.12 | |
| 1qop_A | 268 | Tryptophan synthase alpha chain; lyase, carbon-oxy | 91.04 | |
| 2zad_A | 345 | Muconate cycloisomerase; muconate lactonizing enzy | 91.01 | |
| 3r2g_A | 361 | Inosine 5'-monophosphate dehydrogenase; structural | 91.01 | |
| 1a3w_A | 500 | Pyruvate kinase; allosteric regulation, tranferase | 90.95 | |
| 1nu5_A | 370 | Chloromuconate cycloisomerase; enzyme, dehalogenat | 90.82 | |
| 2nql_A | 388 | AGR_PAT_674P, isomerase/lactonizing enzyme; enolas | 90.77 | |
| 3r12_A | 260 | Deoxyribose-phosphate aldolase; TIM beta/alpha-bar | 90.71 | |
| 3no3_A | 238 | Glycerophosphodiester phosphodiesterase; structura | 90.68 | |
| 1rvk_A | 382 | Isomerase/lactonizing enzyme; enolase superfamily, | 90.48 | |
| 3ayv_A | 254 | Putative uncharacterized protein TTHB071; structur | 90.34 | |
| 3txv_A | 450 | Probable tagatose 6-phosphate kinase; structural g | 90.31 | |
| 2qgy_A | 391 | Enolase from the environmental genome shotgun sequ | 90.25 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 90.15 | |
| 1olt_A | 457 | Oxygen-independent coproporphyrinogen III oxidase; | 90.12 | |
| 2p8b_A | 369 | Mandelate racemase/muconate lactonizing enzyme fam | 89.96 | |
| 2hzg_A | 401 | Mandelate racemase/muconate lactonizing enzyme/EN | 89.93 | |
| 2pp0_A | 398 | L-talarate/galactarate dehydratase; enolase superf | 89.75 | |
| 4af0_A | 556 | Inosine-5'-monophosphate dehydrogenase; oxidoreduc | 89.6 | |
| 2f6u_A | 234 | GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy | 89.54 | |
| 3i4k_A | 383 | Muconate lactonizing enzyme; structural genomics, | 89.54 | |
| 1vc4_A | 254 | Indole-3-glycerol phosphate synthase; lyase, trypt | 89.5 | |
| 3pm6_A | 306 | Putative fructose-bisphosphate aldolase; structura | 89.48 | |
| 2gdq_A | 382 | YITF; mandelate racemase/muconate lactonizing enzy | 89.41 | |
| 3mz2_A | 292 | Glycerophosphoryl diester phosphodiesterase; struc | 89.35 | |
| 3jva_A | 354 | Dipeptide epimerase; enolase superfamily, isomeras | 89.33 | |
| 1jcn_A | 514 | Inosine monophosphate dehydrogenase I; IMPD, IMPDH | 89.31 | |
| 3ovp_A | 228 | Ribulose-phosphate 3-epimerase; iron binding, isom | 89.26 | |
| 1tzz_A | 392 | Hypothetical protein L1841; structural genomics, m | 89.22 | |
| 1tkk_A | 366 | Similar to chloromuconate cycloisomerase; epimeras | 89.13 | |
| 1f76_A | 336 | Dihydroorotate dehydrogenase; monomer, alpha-beta- | 89.12 | |
| 3aal_A | 303 | Probable endonuclease 4; endoiv, DNA repair, base | 89.11 | |
| 3rpd_A | 357 | Methionine synthase (B12-independent); structural | 89.03 | |
| 3dg3_A | 367 | Muconate cycloisomerase; muconate lactonizing enzy | 88.95 | |
| 2wqp_A | 349 | Polysialic acid capsule biosynthesis protein SIAC; | 88.86 | |
| 3qc0_A | 275 | Sugar isomerase; TIM barrel, structural genomics, | 88.81 | |
| 2vc6_A | 292 | MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar | 88.81 | |
| 2qgq_A | 304 | Protein TM_1862; alpha-beta protein, structural ge | 88.74 | |
| 3inp_A | 246 | D-ribulose-phosphate 3-epimerase; IDP02542, isomer | 88.63 | |
| 2ftp_A | 302 | Hydroxymethylglutaryl-COA lyase; structural genomi | 88.54 | |
| 2fiq_A | 420 | Putative tagatose 6-phosphate kinase 1; structural | 88.51 | |
| 2qde_A | 397 | Mandelate racemase/muconate lactonizing enzyme FA | 88.47 | |
| 3lot_A | 314 | Uncharacterized protein; protein of unknown functi | 88.35 | |
| 1ccw_A | 137 | Protein (glutamate mutase); coenzyme B12, radical | 88.29 | |
| 2rdx_A | 379 | Mandelate racemase/muconate lactonizing enzyme, P; | 88.23 | |
| 1tqx_A | 227 | D-ribulose-5-phosphate 3-epimerase, putative; stru | 88.23 | |
| 3qz6_A | 261 | HPCH/HPAI aldolase; structural genomics, PSI-biolo | 88.21 | |
| 2vp8_A | 318 | Dihydropteroate synthase 2; RV1207 transferase, fo | 88.17 | |
| 2ps2_A | 371 | Putative mandelate racemase/muconate lactonizing e | 88.06 | |
| 3dip_A | 410 | Enolase; structural genomics, isomerase, PSI-2, pr | 87.88 | |
| 2poz_A | 392 | Putative dehydratase; octamer, structural genomics | 87.78 | |
| 4hb7_A | 270 | Dihydropteroate synthase; transferase; 1.95A {Stap | 87.56 | |
| 3cqj_A | 295 | L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre | 87.49 | |
| 3flu_A | 297 | DHDPS, dihydrodipicolinate synthase; TIM barrel, b | 87.49 | |
| 3b8i_A | 287 | PA4872 oxaloacetate decarboxylase; alpha/beta barr | 87.49 | |
| 3tva_A | 290 | Xylose isomerase domain protein TIM barrel; struct | 87.47 | |
| 2hxt_A | 441 | L-fuconate dehydratase; enolase superfamily, D-ery | 87.34 | |
| 1qtw_A | 285 | Endonuclease IV; DNA repair enzyme, TIM barrel, tr | 87.25 | |
| 1eep_A | 404 | Inosine 5'-monophosphate dehydrogenase; alpha-beta | 87.16 | |
| 3qze_A | 314 | DHDPS, dihydrodipicolinate synthase; alpha beta ba | 87.15 | |
| 2h9a_B | 310 | CO dehydrogenase/acetyl-COA synthase, iron- sulfur | 87.06 | |
| 2o7s_A | 523 | DHQ-SDH PR, bifunctional 3-dehydroquinate dehydrat | 86.99 | |
| 3nav_A | 271 | Tryptophan synthase alpha chain; alpha subunit, st | 86.77 | |
| 3l5l_A | 363 | Xenobiotic reductase A; TIM barrel, oxidoreductase | 86.72 | |
| 1x7f_A | 385 | Outer surface protein; structural genomics, unknow | 86.67 | |
| 3ctl_A | 231 | D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p | 86.67 | |
| 4dxk_A | 400 | Mandelate racemase / muconate lactonizing enzyme p | 86.66 | |
| 2egz_A | 219 | 3-dehydroquinate dehydratase; aquifex aeolicus VF5 | 86.61 | |
| 3eb2_A | 300 | Putative dihydrodipicolinate synthetase; lysine bi | 86.6 | |
| 1tqj_A | 230 | Ribulose-phosphate 3-epimerase; beta-alpha barrel | 86.52 | |
| 2ze3_A | 275 | DFA0005; organic waste LEFT-OVER decomposition, al | 86.42 | |
| 2i14_A | 395 | Nicotinate-nucleotide pyrophosphorylase; ligand bi | 86.42 | |
| 2zds_A | 340 | Putative DNA-binding protein; TIM-barrel fold, str | 86.39 | |
| 2fli_A | 220 | Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr | 86.38 | |
| 1rd5_A | 262 | Tryptophan synthase alpha chain, chloroplast; hydr | 86.34 | |
| 2y5s_A | 294 | DHPS, dihydropteroate synthase; transferase, folat | 86.26 | |
| 2e28_A | 587 | Pyruvate kinase, PK; allosteric, transferase; 2.40 | 86.17 | |
| 3vzx_A | 228 | Heptaprenylglyceryl phosphate synthase; biosynthes | 86.14 | |
| 2gl5_A | 410 | Putative dehydratase protein; structural genomics, | 86.13 | |
| 3vnd_A | 267 | TSA, tryptophan synthase alpha chain; psychrophili | 86.02 | |
| 3ffs_A | 400 | Inosine-5-monophosphate dehydrogenase; beta-alpha | 85.98 | |
| 3ozy_A | 389 | Putative mandelate racemase; beta-alpha barrel, en | 85.83 | |
| 3na8_A | 315 | Putative dihydrodipicolinate synthetase; lyase; HE | 85.73 | |
| 3f4w_A | 211 | Putative hexulose 6 phosphate synthase; humps, mal | 85.69 | |
| 3o6c_A | 260 | PNP synthase, pyridoxine 5'-phosphate synthase; st | 85.68 | |
| 2qdd_A | 378 | Mandelate racemase/muconate lactonizing enzyme; en | 85.66 | |
| 1w3i_A | 293 | EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m | 85.63 | |
| 4dwd_A | 393 | Mandelate racemase/muconate lactonizing enzyme, C | 85.6 | |
| 2r14_A | 377 | Morphinone reductase; H-tunnelling, flavoprotein, | 85.56 | |
| 2c6q_A | 351 | GMP reductase 2; TIM barrel, metal-binding, NADP, | 85.44 | |
| 3tj4_A | 372 | Mandelate racemase; enolase, dehydratase, enzyme f | 85.39 | |
| 3bjs_A | 428 | Mandelate racemase/muconate lactonizing enzyme; en | 85.34 | |
| 3qvq_A | 252 | Phosphodiesterase OLEI02445; structural genomics, | 85.26 | |
| 1sjd_A | 368 | N-acylamino acid racemase; lyase, isomerase; HET: | 85.23 | |
| 3gka_A | 361 | N-ethylmaleimide reductase; decode biostructures, | 85.21 | |
| 1vs1_A | 276 | 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha | 85.15 | |
| 1zfj_A | 491 | Inosine monophosphate dehydrogenase; IMPDH, CBS do | 85.13 | |
| 1vyr_A | 364 | Pentaerythritol tetranitrate reductase; oxidoreduc | 85.1 | |
| 1gte_A | 1025 | Dihydropyrimidine dehydrogenase; electron transfer | 85.04 | |
| 1sgj_A | 284 | Citrate lyase, beta subunit; trimer, TIM barrel, s | 84.95 | |
| 2ox4_A | 403 | Putative mandelate racemase; enolase, dehydratase, | 84.88 | |
| 3r0u_A | 379 | Enzyme of enolase superfamily; structural genomics | 84.83 | |
| 2q02_A | 272 | Putative cytoplasmic protein; structural genomics, | 84.65 | |
| 1vrd_A | 494 | Inosine-5'-monophosphate dehydrogenase; TM1347, st | 84.61 | |
| 3e49_A | 311 | Uncharacterized protein DUF849 with A TIM barrel; | 84.6 | |
| 3luf_A | 259 | Two-component system response regulator/ggdef doma | 84.53 | |
| 3kts_A | 192 | Glycerol uptake operon antiterminator regulatory; | 84.53 | |
| 3w01_A | 235 | Heptaprenylglyceryl phosphate synthase; biosynthes | 84.52 | |
| 2v9d_A | 343 | YAGE; dihydrodipicolinic acid synthase, N-acetyl n | 84.49 | |
| 3ro6_B | 356 | Putative chloromuconate cycloisomerase; TIM barrel | 84.43 | |
| 4g9p_A | 406 | 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; | 84.05 | |
| 1i60_A | 278 | IOLI protein; beta barrel, structural genomics, PS | 83.92 | |
| 1ypx_A | 375 | Putative vitamin-B12 independent methionine synth | 83.89 | |
| 3ddm_A | 392 | Putative mandelate racemase/muconate lactonizing e | 83.88 | |
| 3igs_A | 232 | N-acetylmannosamine-6-phosphate 2-epimerase 2; ene | 83.85 | |
| 3q58_A | 229 | N-acetylmannosamine-6-phosphate 2-epimerase; TIM b | 83.83 | |
| 1r0m_A | 375 | N-acylamino acid racemase; isomerase; 1.30A {Deino | 83.82 | |
| 3tsm_A | 272 | IGPS, indole-3-glycerol phosphate synthase; struct | 83.77 | |
| 1o5k_A | 306 | DHDPS, dihydrodipicolinate synthase; TM1521, struc | 83.74 | |
| 2o56_A | 407 | Putative mandelate racemase; dehydratase, structur | 83.74 | |
| 2r91_A | 286 | 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM | 83.68 | |
| 2g0w_A | 296 | LMO2234 protein; putative sugar isomerase, structu | 83.5 | |
| 3u0h_A | 281 | Xylose isomerase domain protein; structural genomi | 83.5 | |
| 1h1y_A | 228 | D-ribulose-5-phosphate 3-epimerase; oxidative pent | 83.47 | |
| 1vhn_A | 318 | Putative flavin oxidoreducatase; structural genomi | 83.46 | |
| 3fst_A | 304 | 5,10-methylenetetrahydrofolate reductase; TIM barr | 83.42 | |
| 3e02_A | 311 | Uncharacterized protein DUF849; structural genomic | 83.32 | |
| 2vef_A | 314 | Dihydropteroate synthase; antibiotic resistance, t | 83.23 | |
| 2zc8_A | 369 | N-acylamino acid racemase; octamer, TIM beta/alpha | 83.2 | |
| 1vr6_A | 350 | Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034 | 83.16 | |
| 3e96_A | 316 | Dihydrodipicolinate synthase; structural genomics, | 83.12 | |
| 2gou_A | 365 | Oxidoreductase, FMN-binding; OLD yeallow enzyme, f | 83.1 | |
| 2f7f_A | 494 | Nicotinate phosphoribosyltransferase, putative; st | 83.07 | |
| 2otd_A | 247 | Glycerophosphodiester phosphodiesterase; structura | 83.01 | |
| 3i10_A | 278 | Putative glycerophosphoryl diester phosphodiester; | 83.0 | |
| 3no5_A | 275 | Uncharacterized protein; PFAM DUF849 domain contai | 82.94 | |
| 3sjn_A | 374 | Mandelate racemase/muconate lactonizing protein; e | 82.79 | |
| 2ekc_A | 262 | AQ_1548, tryptophan synthase alpha chain; structur | 82.79 | |
| 3ih1_A | 305 | Methylisocitrate lyase; alpha-beta structure, TIM- | 82.66 | |
| 2qkf_A | 280 | 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; | 82.63 | |
| 2x7v_A | 287 | Probable endonuclease 4; DNA repair protein, metal | 82.62 | |
| 3apt_A | 310 | Methylenetetrahydrofolate reductase; TIM barrel, o | 82.54 | |
| 3hzh_A | 157 | Chemotaxis response regulator (CHEY-3); phosphatas | 82.51 | |
| 3chv_A | 284 | Prokaryotic domain of unknown function (DUF849) W | 82.42 | |
| 3r8r_A | 212 | Transaldolase; pentose phosphate pathway, schiff b | 82.41 | |
| 2qq6_A | 410 | Mandelate racemase/muconate lactonizing enzyme- li | 82.31 | |
| 3stp_A | 412 | Galactonate dehydratase, putative; PSI biology, st | 82.22 | |
| 3toy_A | 383 | Mandelate racemase/muconate lactonizing enzyme FA | 82.12 | |
| 1ydn_A | 295 | Hydroxymethylglutaryl-COA lyase; TIM-barrel protei | 82.06 | |
| 1p0k_A | 349 | Isopentenyl-diphosphate delta-isomerase; terpene b | 82.0 | |
| 3daq_A | 292 | DHDPS, dihydrodipicolinate synthase; lysine biosyn | 81.96 | |
| 3cwo_X | 237 | Beta/alpha-barrel protein based on 1THF and 1TMY; | 81.82 | |
| 3vni_A | 294 | Xylose isomerase domain protein TIM barrel; D-psic | 81.76 | |
| 1geq_A | 248 | Tryptophan synthase alpha-subunit; hyperthermophIl | 81.69 | |
| 3b4u_A | 294 | Dihydrodipicolinate synthase; structural genomics, | 81.61 | |
| 2o55_A | 258 | Putative glycerophosphodiester phosphodiesterase; | 81.53 | |
| 2ols_A | 794 | Phosphoenolpyruvate synthase; MC structural genomi | 81.5 | |
| 2nuw_A | 288 | 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a | 81.49 | |
| 3vkj_A | 368 | Isopentenyl-diphosphate delta-isomerase; type 2 is | 81.44 | |
| 3eoo_A | 298 | Methylisocitrate lyase; seattle structural genomic | 81.4 | |
| 1yxy_A | 234 | Putative N-acetylmannosamine-6-phosphate 2-epimer; | 81.38 | |
| 2ehh_A | 294 | DHDPS, dihydrodipicolinate synthase; structural ge | 81.2 | |
| 3jr2_A | 218 | Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon | 81.1 | |
| 1tv5_A | 443 | Dhodehase, dihydroorotate dehydrogenase homolog, m | 80.87 | |
| 3l5a_A | 419 | NADH/flavin oxidoreductase/NADH oxidase; OLD yello | 80.76 | |
| 2qul_A | 290 | D-tagatose 3-epimerase; beta/alpha barrel, isomera | 80.49 | |
| 1vd6_A | 224 | Glycerophosphoryl diester phosphodiesterase; glyce | 80.38 | |
| 3can_A | 182 | Pyruvate-formate lyase-activating enzyme; structur | 80.33 | |
| 3c8f_A | 245 | Pyruvate formate-lyase 1-activating enzyme; adoMet | 80.33 | |
| 3tji_A | 422 | Mandelate racemase/muconate lactonizing enzyme, N | 80.3 | |
| 3ppg_A | 789 | 5-methyltetrahydropteroyltriglutamate--homocystei | 80.28 |
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-65 Score=458.32 Aligned_cols=217 Identities=43% Similarity=0.717 Sum_probs=208.2
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~ 135 (281)
+++|+|||||+|+.+|+++++.++++|+||+|+|||||+||||++||+.++++||+.+ ++++|+|||++||++|++.++
T Consensus 27 ~~~i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~ 106 (246)
T 3inp_A 27 HIQINPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFA 106 (246)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHH
T ss_pred CCeeehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHH
Confidence 4789999999999999999999999999999999999999999999999999999987 899999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|||+||||+|+ .+++.++++.||++|+++|+++||.||++.++++++.+|+|++|+|+|||+||+|+|++++||++
T Consensus 107 ~aGAd~itvH~Ea--~~~~~~~i~~ir~~G~k~Gvalnp~Tp~e~l~~~l~~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~ 184 (246)
T 3inp_A 107 KAGATSIVFHPEA--SEHIDRSLQLIKSFGIQAGLALNPATGIDCLKYVESNIDRVLIMSVNPGFGGQKFIPAMLDKAKE 184 (246)
T ss_dssp HHTCSEEEECGGG--CSCHHHHHHHHHTTTSEEEEEECTTCCSGGGTTTGGGCSEEEEECSCTTC--CCCCTTHHHHHHH
T ss_pred HcCCCEEEEcccc--chhHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHhcCCEEEEeeecCCCCCcccchHHHHHHHH
Confidence 9999999999996 47899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+|++++++|++++|+||||||++|+++++++|||++|+||+||+++||++++++|++.+.
T Consensus 185 lr~~~~~~~~~~~I~VDGGI~~~ti~~~~~aGAD~~V~GSaIf~a~dp~~~i~~l~~~i~ 244 (246)
T 3inp_A 185 ISKWISSTDRDILLEIDGGVNPYNIAEIAVCGVNAFVAGSAIFNSDSYKQTIDKMRDELN 244 (246)
T ss_dssp HHHHHHHHTSCCEEEEESSCCTTTHHHHHTTTCCEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCeeEEEECCcCHHHHHHHHHcCCCEEEEehHHhCCCCHHHHHHHHHHHHh
Confidence 999999888889999999999999999999999999999999999999999999998754
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-62 Score=439.19 Aligned_cols=215 Identities=32% Similarity=0.612 Sum_probs=206.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
+|+|||||+|+.+|+++++.+ +.|+||+|+|||||+||||++||+.++++||+.+++++|+|||++||++|++.++++|
T Consensus 2 ~i~pSila~D~~~l~~~i~~~-~~gad~lHvDvmDG~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aG 80 (231)
T 3ctl_A 2 KISPSLMCMDLLKFKEQIEFI-DSHADYFHIDIMDGHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAG 80 (231)
T ss_dssp EEEEBGGGSCGGGHHHHHHHH-HTTCSCEEEEEECSSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHT
T ss_pred eEEeehhhCChhhHHHHHHHH-HcCCCEEEEEEEeCccCccchhcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcC
Confidence 699999999999999999999 8999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
||++|||+|+. ..++.++++.+|++|+++|+++||+||++.++++++.+|+|++|+|+|||+||+|.|.+++||+++|+
T Consensus 81 Ad~itvh~Ea~-~~~~~~~i~~i~~~G~k~gv~lnp~tp~~~~~~~l~~~D~VlvmsV~pGfggQ~f~~~~l~kI~~lr~ 159 (231)
T 3ctl_A 81 ADFITLHPETI-NGQAFRLIDEIRRHDMKVGLILNPETPVEAMKYYIHKADKITVMTVDPGFAGQPFIPEMLDKLAELKA 159 (231)
T ss_dssp CSEEEECGGGC-TTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCTTCSSCCCCTTHHHHHHHHHH
T ss_pred CCEEEECcccC-CccHHHHHHHHHHcCCeEEEEEECCCcHHHHHHHHhcCCEEEEeeeccCcCCccccHHHHHHHHHHHH
Confidence 99999999961 46899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc-ccccCCCC-HHHHHHHHHHhcC
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG-SAVFGAKD-YAEAIKGIKTSKR 275 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG-SaIf~a~d-p~~~~~~l~~~~~ 275 (281)
+++++|++++|+||||||++|+++++++|||++|+| |+||+++| |++++++|++.++
T Consensus 160 ~~~~~~~~~~I~VdGGI~~~~~~~~~~aGAd~~V~G~saif~~~d~~~~~~~~l~~~~~ 218 (231)
T 3ctl_A 160 WREREGLEYEIEVDGSCNQATYEKLMAAGADVFIVGTSGLFNHAENIDEAWRIMTAQIL 218 (231)
T ss_dssp HHHHHTCCCEEEEESCCSTTTHHHHHHHTCCEEEECTTTTGGGCSSHHHHHHHHHHHHH
T ss_pred HHhccCCCceEEEECCcCHHHHHHHHHcCCCEEEEccHHHhCCCCcHHHHHHHHHHHHH
Confidence 998888889999999999999999999999999999 99999888 9999999988654
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-61 Score=429.70 Aligned_cols=213 Identities=39% Similarity=0.625 Sum_probs=203.7
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecChhhHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp~~~i~~~ 134 (281)
.++|+|||||+|+.+|+++++.++++|+||+|+|||||+||||++||++++++||+. ++.++|+|||++||++|++.+
T Consensus 4 ~~~i~psil~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~ 83 (228)
T 3ovp_A 4 GCKIGPSILNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPM 83 (228)
T ss_dssp CCEEEEBCTTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHH
T ss_pred CcEeeeeheeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999998 689999999999999999999
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+++|||+||||+|+ .+++.++++.+|++|+++|++++|+||++.++++++.+|+|++|+|+|||+||+|.|++++||+
T Consensus 84 ~~aGad~itvH~Ea--~~~~~~~i~~i~~~G~k~gval~p~t~~e~l~~~l~~~D~Vl~msv~pGf~Gq~f~~~~l~ki~ 161 (228)
T 3ovp_A 84 AVAGANQYTFHLEA--TENPGALIKDIRENGMKVGLAIKPGTSVEYLAPWANQIDMALVMTVEPGFGGQKFMEDMMPKVH 161 (228)
T ss_dssp HHHTCSEEEEEGGG--CSCHHHHHHHHHHTTCEEEEEECTTSCGGGTGGGGGGCSEEEEESSCTTTCSCCCCGGGHHHHH
T ss_pred HHcCCCEEEEccCC--chhHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHhccCCeEEEeeecCCCCCcccCHHHHHHHH
Confidence 99999999999996 4689999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++|++.. +++|+||||||++|+++++++|||++|+||+||+++||++++++|++.++
T Consensus 162 ~lr~~~~----~~~I~VdGGI~~~t~~~~~~aGAd~~VvGsaIf~a~dp~~~~~~l~~~~~ 218 (228)
T 3ovp_A 162 WLRTQFP----SLDIEVDGGVGPDTVHKCAEAGANMIVSGSAIMRSEDPRSVINLLRNVCS 218 (228)
T ss_dssp HHHHHCT----TCEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred HHHHhcC----CCCEEEeCCcCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 9998753 47899999999999999999999999999999999999999999998654
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-60 Score=425.41 Aligned_cols=212 Identities=37% Similarity=0.645 Sum_probs=201.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~ 135 (281)
..+|+|||||+|+.+|+++++.++++|+||+|+|||||+||||++||+..+++||+.+ +.++|+||||+||++|++.++
T Consensus 5 ~~~i~pSila~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~ 84 (227)
T 1tqx_A 5 KAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLK 84 (227)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCT
T ss_pred CCeEEeehhcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHH
Confidence 4679999999999999999999999999999999999999999999999999999987 899999999999999999888
Q ss_pred HcCCCEEEEcccccccccHHHHHH---HHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLN---QIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~---~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
+ ||++|||+|+. .+++.++++ .+|++|+++|+++||+||++.++++++ .+|+|++|+|+|||+||+|.|.++
T Consensus 85 ~--Ad~itvH~ea~-~~~~~~~i~~~~~i~~~G~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l 161 (227)
T 1tqx_A 85 T--SNQLTFHFEAL-NEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMM 161 (227)
T ss_dssp T--SSEEEEEGGGG-TTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGH
T ss_pred h--CCEEEEeecCC-ccCHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHH
Confidence 8 99999999973 338999999 999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+||+++|++++ +++|+||||||++|+++++++|||++|+||+||+++||++++++|++.++
T Consensus 162 ~ki~~lr~~~~----~~~I~VdGGI~~~ti~~~~~aGAd~~V~GsaIf~~~d~~~~i~~l~~~~~ 222 (227)
T 1tqx_A 162 GKVSFLRKKYK----NLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQ 222 (227)
T ss_dssp HHHHHHHHHCT----TCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcc----CCeEEEECCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHH
Confidence 99999999874 57999999999999999999999999999999999999999999988654
|
| >3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-58 Score=412.74 Aligned_cols=211 Identities=25% Similarity=0.361 Sum_probs=203.1
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
+|+|||+|+|+.+|+++++.++++|+||+|+|+|||+|+||++||+..+++||+.++. |+|||++||++|++.++++|
T Consensus 15 ~i~psila~D~~~l~~~i~~~~~~gad~lhvDvmDG~fvpn~t~G~~~v~~lr~~~~~--DvhLMv~~p~~~i~~~~~aG 92 (237)
T 3cu2_A 15 KLSVGILSANWLQLNEEVTTLLENQINVLHFDIADGQFSSLFTVGAIGIKYFPTHCFK--DVHLMVRNQLEVAKAVVANG 92 (237)
T ss_dssp CEEEEGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCTHHHHTSCTTSEE--EEEEECSCHHHHHHHHHHTT
T ss_pred eEEEeeeeCCcccHHHHHHHHHHcCCCEEEEEEecCccccchhhhHHHHHHHhhhCCC--CeEEEEECHHHHHHHHHHcC
Confidence 5999999999999999999999999999999999999999999999999999998764 99999999999999999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHc---------CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDL---------GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~---------G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
||++|||.|+ .+++.++++.+|++ |+++|+++||+||++.++++++.+|+|++|+|+|||+||+|.+.+
T Consensus 93 Ad~itvH~ea--~~~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~p~Tp~~~l~~~l~~~D~vlvMsv~pgfggq~f~~~~ 170 (237)
T 3cu2_A 93 ANLVTLQLEQ--YHDFALTIEWLAKQKTTYANQVYPVLIGACLCPETPISELEPYLDQIDVIQLLTLDPRNGTKYPSELI 170 (237)
T ss_dssp CSEEEEETTC--TTSHHHHHHHHTTCEEEETTEEEECEEEEEECTTSCGGGGTTTTTTCSEEEEESEETTTTEECCHHHH
T ss_pred CCEEEEecCC--cccHHHHHHHHHhcccccccccCCceEEEEEeCCChHHHHHHHhhcCceeeeeeeccCcCCeecChhH
Confidence 9999999996 47799999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH--cCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE--AGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~--aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
++||+++|+++++++++++|+||||||.+|++++++ +|||++|+||+||++ ||++++++|++.+
T Consensus 171 l~ki~~lr~~~~~~~~~~~I~vdGGI~~~~~~~~~~~~aGad~~VvGSaIf~~-d~~~~~~~l~~~~ 236 (237)
T 3cu2_A 171 LDRVIQVEKRLGNRRVEKLINIDGSMTLELAKYFKQGTHQIDWLVSGSALFSG-ELKTNLKVWKSSI 236 (237)
T ss_dssp HHHHHHHHHHHGGGGGGCEEEEESSCCHHHHHHHHHSSSCCCCEEECGGGGSS-CHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCceEEEECCcCHHHHHHHHHhCCCCcEEEEeeHHhCC-CHHHHHHHHHHhh
Confidence 999999999998777789999999999999999999 999999999999998 9999999998764
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-56 Score=394.96 Aligned_cols=218 Identities=69% Similarity=1.135 Sum_probs=204.2
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
++|+|||+|+|+.++.++++.++++|+||+|+|+|||+|+||+++|++.+++||+.++.++++|||++||++|++.+.++
T Consensus 5 ~~i~psila~D~~~l~~~i~~~~~~Gad~ihldi~DG~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~a 84 (230)
T 1tqj_A 5 IVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKA 84 (230)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHH
T ss_pred cEEEEEeeecCHhHHHHHHHHHHHcCCCEEEEEEEecCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred CCCEEEEccc--ccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 138 GADIVSVHCE--QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~E--a~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
|||+||+|.| + .+++.++++.++++|+++|++++|+|+.+.++++++.+|||++|+++||++||+|.+..+++|++
T Consensus 85 Gadgv~vh~e~~~--~~~~~~~~~~i~~~g~~~gv~~~p~t~~e~~~~~~~~~D~v~~msv~pg~ggq~~~~~~~~~i~~ 162 (230)
T 1tqj_A 85 GADIISVHVEHNA--SPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRA 162 (230)
T ss_dssp TCSEEEEECSTTT--CTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHH
T ss_pred CCCEEEECccccc--chhHHHHHHHHHHcCCcEEEEEeCCCcHHHHHHHHhcCCEEEEEEeccccCCccCcHHHHHHHHH
Confidence 9999999999 7 36789999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~ 277 (281)
+|++.++++++++|+||||||.+|++++.++|||++|+||+||+++||++++++|++.+++.
T Consensus 163 lr~~~~~~~~~~~I~v~GGI~~~~~~~~~~aGad~vvvGSai~~a~d~~~~~~~l~~~~~~~ 224 (230)
T 1tqj_A 163 LRQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRPE 224 (230)
T ss_dssp HHHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCC--
T ss_pred HHHHHHhcCCCCcEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHHhh
Confidence 99999877788999999999999999999999999999999999999999999999876643
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-49 Score=352.81 Aligned_cols=213 Identities=40% Similarity=0.682 Sum_probs=201.4
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
..+|+|||+|+|+.++.++++.++++|+||+|+|+|||+|+||+++|++.+++||+.++.++++|||++||++|++.+.+
T Consensus 6 ~~~i~psi~a~d~~~l~~~i~~~~~~Gad~i~l~i~Dg~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~ 85 (228)
T 1h1y_A 6 AAKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAK 85 (228)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHH
T ss_pred CCeEEEEeeeCCHHHHHHHHHHHHHcCCCEEEEEEecCCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHH
Confidence 45799999999999999999999999999999999999999999999999999999887899999999999999999999
Q ss_pred cCCCEEEEcccccccccH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc---cCCEEEEEeecCCCCCCccchhHHHH
Q 023494 137 AGADIVSVHCEQSSTIHL-HRTLNQIKDLGAKAGVVLNPATSLSAIECVLD---VVDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i-~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~---~vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
+|+|+|++|.|. .++. .+.++.+++.|+++|++++|+|+.+.++++++ .+|||++|+++||++||+|.+..+++
T Consensus 86 agad~v~vH~~~--~~~~~~~~~~~i~~~g~~igv~~~p~t~~e~~~~~~~~~~~~d~vl~~sv~pg~~g~~~~~~~l~~ 163 (228)
T 1h1y_A 86 AGASGFTFHIEV--SRDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEK 163 (228)
T ss_dssp HTCSEEEEEGGG--CTTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHH
T ss_pred cCCCEEEECCCC--cccHHHHHHHHHHHcCCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEeecCCCCcccCCHHHHHH
Confidence 999999999996 3556 89999999999999999999999999999998 89999999999999999999999999
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++|++.. +++|.||||||++|+.+++++|||++|+||+||+++||++++++|++.++
T Consensus 164 i~~~~~~~~----~~pi~v~GGI~~~ni~~~~~aGaD~vvvGsai~~~~d~~~~~~~l~~~~~ 222 (228)
T 1h1y_A 164 VRALRKKYP----SLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVE 222 (228)
T ss_dssp HHHHHHHCT----TSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcC----CCCEEEECCcCHHHHHHHHHcCCCEEEECHHHHCCCCHHHHHHHHHHHHH
Confidence 999999863 47899999999999999999999999999999999999999999988665
|
| >1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=322.59 Aligned_cols=225 Identities=91% Similarity=1.380 Sum_probs=208.5
Q ss_pred cccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhh
Q 023494 50 VDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQ 129 (281)
Q Consensus 50 ~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~ 129 (281)
.+.++++.++|+|||+++|+.++.+.++.+.++|+|++|+|+|||+|+||+++|++.+++||+.++.++++|+|++||.+
T Consensus 3 ~~~~~~~~~~i~p~i~a~d~~~~~~~i~~~~~~G~d~i~l~~~dg~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~ 82 (230)
T 1rpx_A 3 VDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQ 82 (230)
T ss_dssp GGGSCTTSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHH
T ss_pred CCccCCCceEEEEEeecCCHHHHHHHHHHHHHCCCCEEEEeeccCCcccccccCHHHHHHHHhccCCcEEEEEEecCHHH
Confidence 34455667789999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHHHcCCCEEEEccc--ccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 130 RVPDFIKAGADIVSVHCE--QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~E--a~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+++.+.++|+|+|++|.+ .. +++.++++.++++|+++|++++|+|+.+.++++...+|+|++|+++||++||.|.+
T Consensus 83 ~v~~~~~~Gad~v~vh~~~~~~--~~~~~~~~~~~~~g~~ig~~~~p~t~~e~~~~~~~~~d~vl~~~~~pg~~g~~~~~ 160 (230)
T 1rpx_A 83 RVPDFIKAGADIVSVHCEQSST--IHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIE 160 (230)
T ss_dssp HHHHHHHTTCSEEEEECSTTTC--SCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCT
T ss_pred HHHHHHHcCCCEEEEEecCccc--hhHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHhhCCEEEEEEEcCCCCCccccH
Confidence 999999999999999998 62 56788999999999999999999999999988888899999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
..+++++++|+..++.+.++++.++||||++|+.+++++|||.+|+||+||+++||.+++++|++.+++
T Consensus 161 ~~~~~i~~l~~~~~~~~~~~pi~v~GGI~~~n~~~~~~aGad~vvvgSaI~~a~dp~~a~~~l~~~~~~ 229 (230)
T 1rpx_A 161 SQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRP 229 (230)
T ss_dssp THHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEChhhhCCCCHHHHHHHHHHHHhc
Confidence 999999999999875556689999999999999999999999999999999999999999999987654
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-43 Score=310.05 Aligned_cols=217 Identities=45% Similarity=0.761 Sum_probs=203.0
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.++|+|||+|+|+.++.++++.+.+.|+|++|+|+|||+|++++++|++.+++||+.++.++++|+|++||.++++.+.+
T Consensus 3 ~~~~~~~i~a~D~~~~~~~~~~~~~~G~~~i~~~~~dg~~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~ 82 (220)
T 2fli_A 3 TLKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQ 82 (220)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHH
T ss_pred CcEEEEEEEeCCHHHHHHHHHHHHHcCCCEEEEEeecCCCCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHH
Confidence 35799999999999999999999999999999999999999999999999999999888899999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|+|+|++|.+. .+++.+.++.++++|+++|++++|.|+.+.++++.+.+|+|++|+++||++||.|.+..+++++++
T Consensus 83 ~gad~v~vh~~~--~~~~~~~~~~~~~~g~~i~~~~~~~t~~e~~~~~~~~~d~vl~~~~~~g~~g~~~~~~~~~~i~~~ 160 (220)
T 2fli_A 83 AGADIMTIHTES--TRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATV 160 (220)
T ss_dssp HTCSEEEEEGGG--CSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHH
T ss_pred cCCCEEEEccCc--cccHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHhhCCEEEEEEECCCCcccccCHHHHHHHHHH
Confidence 999999999996 367889999999999999999999999999888888899999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
|++..+.+.++++.++|||+++|+.++.++|||.+|+||+||+++||++++++|++.++
T Consensus 161 ~~~~~~~~~~~~i~v~GGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~a~~~~~~~~~ 219 (220)
T 2fli_A 161 AKWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTALN 219 (220)
T ss_dssp HHHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHC
T ss_pred HHHHHhcCCCceEEEECcCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHhc
Confidence 99886555568899999999999999999999999999999999999999999987653
|
| >2czd_A Orotidine 5'-phosphate decarboxylase; pyrimidine biosynthesis, orotidine 5'-phosphate decarboxylas (ompdecase), structural genomics; 1.60A {Pyrococcus horikoshii} SCOP: c.1.2.3 PDB: 2cz5_A 2cze_A* 2czf_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=272.46 Aligned_cols=199 Identities=19% Similarity=0.175 Sum_probs=180.3
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEE--ecChhhHHHHHHHc
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLM--IVEPEQRVPDFIKA 137 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLm--v~dp~~~i~~~~~a 137 (281)
+.++|+|+.+++++++.+++.|.+++|+|+|||+| ++||++.+++||+. +.+++|+|+| .++|.+|++.++++
T Consensus 1 ~lila~D~~~l~~~~~~~~~~~~~~~~~kv~~~~f---~~~G~~~i~~lr~~~~~~v~~D~kl~DI~~t~~~~v~~~~~~ 77 (208)
T 2czd_A 1 MIVLALDVYEGERAIKIAKSVKDYISMIKVNWPLI---LGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFGA 77 (208)
T ss_dssp CEEEECCCCSHHHHHHHHHHHGGGCSEEEEEHHHH---HHHCTTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHT
T ss_pred CeEEEecCCCHHHHHHHHHHhcccccEEEecHHHH---HhhCHHHHHHHHHcCCCEEEEEeeeCchHHHHHHHHHHHHhc
Confidence 46899999999999999999999999999999999 88999999999987 7789999999 99999999999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh-hccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||++|+|.+.. . ..++.+++.+ |+.++|.|+.+.+.++ .+.+|+++.|+++||++||.|.+..+++++++
T Consensus 78 Gad~vtvh~~~g--~---~~i~~~~~~~---gv~vl~~t~~~~~~~~~~~~v~~~~~~a~~~G~~G~~~~~~~~~~i~~l 149 (208)
T 2czd_A 78 GADYVIVHTFVG--R---DSVMAVKELG---EIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYI 149 (208)
T ss_dssp TCSEEEEESTTC--H---HHHHHHHTTS---EEEEECCCCSGGGGTTTGGGHHHHHHHHHHHCCSEEECCCSSTHHHHHH
T ss_pred CCCEEEEeccCC--H---HHHHHHHHhC---CcEEEEecCCcchhhHHHHHHHHHHHHHHHhCCcEEEECCCChHHHHHH
Confidence 999999999963 2 3488888888 9999999999877665 67788999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
|+.++ .++.+ |||||+++ ++.+++++|||++|+||+||+++||.++++++++.++
T Consensus 150 r~~~~---~~~~i-v~gGI~~~g~~~~~~~~aGad~vvvGr~I~~a~dp~~~~~~l~~~i~ 206 (208)
T 2czd_A 150 RDRLK---EGIKI-LAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206 (208)
T ss_dssp HHHSC---TTCEE-EECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred HHhCC---CCeEE-EECCCCCCCCCHHHHHHcCCCEEEEChHHhcCCCHHHHHHHHHHHHh
Confidence 98863 34556 99999998 8999999999999999999999999999999998764
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-35 Score=257.71 Aligned_cols=201 Identities=16% Similarity=0.218 Sum_probs=173.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CC--CCeeEEEEecChhhHHHHHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TD--LPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~--~~idaHLmv~dp~~~i~~~~~aG 138 (281)
.-++|+|+.+++++++.+++.+ + |+|+||++|++++++|+++|++||+. ++ +++|+||| ..|..|++.+.++|
T Consensus 8 ~lilalD~~~~~~~~~~~~~~~-~--~vd~ie~g~~~~~~~G~~~i~~lr~~~~~~~i~ld~~l~-d~p~~~~~~~~~aG 83 (218)
T 3jr2_A 8 MIQIALDQTNLTDAVAVASNVA-S--YVDVIEVGTILAFAEGMKAVSTLRHNHPNHILVCDMKTT-DGGAILSRMAFEAG 83 (218)
T ss_dssp EEEEEECCSSHHHHHHHHHHHG-G--GCSEEEECHHHHHHHTTHHHHHHHHHCTTSEEEEEEEEC-SCHHHHHHHHHHHT
T ss_pred CeEEEeCCCCHHHHHHHHHHhc-C--CceEEEeCcHHHHhcCHHHHHHHHHhCCCCcEEEEEeec-ccHHHHHHHHHhcC
Confidence 4589999999999999998752 2 57888889999999999999999986 55 56688888 67888899999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhc-cCCEEE-EEeecCCCCCCccchhHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLD-VVDLVL-IMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~-~vD~Il-vmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
||++++|.+.. .+++.++++.++++|+++++ .++|.|+ ++..++.+ .+||+. .|++.||++||.|.++.+++|++
T Consensus 84 ad~i~vh~~~~-~~~~~~~~~~~~~~g~~~~~d~l~~~T~-~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~~~l~~i~~ 161 (218)
T 3jr2_A 84 ADWITVSAAAH-IATIAACKKVADELNGEIQIEIYGNWTM-QDAKAWVDLGITQAIYHRSRDAELAGIGWTTDDLDKMRQ 161 (218)
T ss_dssp CSEEEEETTSC-HHHHHHHHHHHHHHTCEEEEECCSSCCH-HHHHHHHHTTCCEEEEECCHHHHHHTCCSCHHHHHHHHH
T ss_pred CCEEEEecCCC-HHHHHHHHHHHHHhCCccceeeeecCCH-HHHHHHHHcCccceeeeeccccccCCCcCCHHHHHHHHH
Confidence 99999999962 34578999999999999999 8999987 66666655 689875 58888999999999999999988
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++. .+++|.|+|||+++|+++++++|||++|+||+||+++||.+++ ++++.++
T Consensus 162 ~~~------~~~pi~v~GGI~~~~~~~~~~aGAd~vvvGsaI~~a~dp~~a~-~l~~~~~ 214 (218)
T 3jr2_A 162 LSA------LGIELSITGGIVPEDIYLFEGIKTKTFIAGRALAGAEGQQTAA-ALREQID 214 (218)
T ss_dssp HHH------TTCEEEEESSCCGGGGGGGTTSCEEEEEESGGGSHHHHHHHHH-HHHHHHH
T ss_pred HhC------CCCCEEEECCCCHHHHHHHHHcCCCEEEEchhhcCCCCHHHHH-HHHHHHH
Confidence 764 2578999999999999999999999999999999999999999 9988664
|
| >1q6o_A Humps, 3-keto-L-gulonate 6-phosphate decarboxylase, D-; beta barrel, lyase; HET: LG6; 1.20A {Escherichia coli} SCOP: c.1.2.3 PDB: 1kw1_A* 1q6l_A* 1kv8_A* 1q6q_A* 1q6r_A* 1xbv_A* 1so5_A* 1so4_A* 1xby_A* 1so3_A* 1so6_A* 1xbz_A* 1xbx_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-34 Score=250.92 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=167.6
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEE-EEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHH
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIH-VDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iH-iDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
++|++|+|+.+++++++.+++.| +++| +||||++| ++||+..|+.||+. +++++|+||| ..|..+++.+.+
T Consensus 4 ~~~ilalD~~~~~~~~~~~~~~~-~~v~~~kv~~~~f---~~~G~~~i~~l~~~~p~~~v~lD~kl~-dip~t~~~~~~~ 78 (216)
T 1q6o_A 4 PMLQVALDNQTMDSAYETTRLIA-EEVDIIEVGTILC---VGEGVRAVRDLKALYPHKIVLADAKIA-DAGKILSRMCFE 78 (216)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHG-GGCSEEEECHHHH---HHHCTHHHHHHHHHCTTSEEEEEEEEC-SCHHHHHHHHHH
T ss_pred CCeEEEECCCCHHHHHHHHHHhc-ccCCEEEECHHHH---HHhCHHHHHHHHHhCCCCeEEEEEEec-ccHHHHHHHHHh
Confidence 58999999999999999999876 3333 69999988 78999999999986 4578999999 478889999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC-C--CCCHHHHHHhhccCCEEE---EEeecCCCCCCccchhHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-P--ATSLSAIECVLDVVDLVL---IMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~-p--~t~ie~~~~~l~~vD~Il---vmsV~pG~~GQ~f~~~~l 210 (281)
+|||++|+|.+.. ...+.++++.++++|+++|+.+. . .++.+.++++ ...|+++ .|+++||++| ++
T Consensus 79 ~Gad~itvh~~~g-~~~l~~~~~~~~~~g~~~~~~ll~~~t~~~~~~l~~~-~~~~~vl~~a~~~~~~G~~g------~~ 150 (216)
T 1q6o_A 79 ANADWVTVICCAD-INTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDA-GIGQVVYHRSRDAQAAGVAW------GE 150 (216)
T ss_dssp TTCSEEEEETTSC-HHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHT-TCCEEEEECCHHHHHTTCCC------CH
T ss_pred CCCCEEEEeccCC-HHHHHHHHHHHHHcCCCceeeeeeCCChhhHHHHHhc-CcHHHHHHHHHHHHhcCCCC------CH
Confidence 9999999999973 44588999999999999998554 4 3455555543 3467787 7889999988 46
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++++|+.++. +++|.|||||+++++.+++++|||++|+||+||+++||.++++++++.++
T Consensus 151 ~~i~~lr~~~~~---~~~i~v~GGI~~~~~~~~~~aGad~ivvG~~I~~a~dp~~~~~~~~~~i~ 212 (216)
T 1q6o_A 151 ADITAIKRLSDM---GFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIA 212 (216)
T ss_dssp HHHHHHHHHHHT---TCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC---CCcEEEECCcChhhHHHHHHcCCCEEEEeehhcCCCCHHHHHHHHHHHHH
Confidence 777888877642 47899999999999999999999999999999999999999999988654
|
| >1eix_A Orotidine 5'-monophosphate decarboxylase; alpha-beta-barrel, protein-inhibitor complex, homodimer, lyase; HET: BMQ; 2.50A {Escherichia coli} SCOP: c.1.2.3 PDB: 1jjk_A* 1l2u_A | Back alignment and structure |
|---|
Probab=99.98 E-value=7.2e-34 Score=255.66 Aligned_cols=203 Identities=17% Similarity=0.250 Sum_probs=173.7
Q ss_pred EeEEEeccCccCHHHHHHHHHHcC--CCe--EEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh---hHH
Q 023494 60 VSPSILSANFAKLGEQVKAVELAG--CDW--IHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE---QRV 131 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G--~d~--iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~---~~i 131 (281)
-+||++++|+.+++++++.+++.| ++| +|+|++ ++||+..++.||+. +.+++|+||| ..|. +|+
T Consensus 14 ~~~~ilalD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~-------~~~G~~~v~~lr~~~~~v~lD~kl~-Dip~t~~~~i 85 (245)
T 1eix_A 14 NSPVVVALDYHNRDDALAFVDKIDPRDCRLKVGKEMF-------TLFGPQFVRELQQRGFDIFLDLKFH-DIPNTAAHAV 85 (245)
T ss_dssp CCCEEEEECCSSHHHHHHHHTTSCTTTCEEEEEHHHH-------HHHHHHHHHHHHHTTCCEEEEEEEC-SCHHHHHHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHhCccCcEEEEcHHHH-------HHhCHHHHHHHHHCCCcEEEEeecc-ccHHHHHHHH
Confidence 479999999999999999999888 899 998874 78999999999997 7789999999 7776 488
Q ss_pred HHHHHcCCCEEEEcccccccccHHHHHHHHHHcCC-cE-EEEECC--CCCHHHHHHh---hccCCEEEEEee-cCCCCCC
Q 023494 132 PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KA-GVVLNP--ATSLSAIECV---LDVVDLVLIMSV-NPGFGGQ 203 (281)
Q Consensus 132 ~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~-k~-Glai~p--~t~ie~~~~~---l~~vD~IlvmsV-~pG~~GQ 203 (281)
+.+.++|||++|||+|.. ...+.++++.++++|+ ++ ++++++ +++.+.++++ .+..|+|+.|++ .|++++|
T Consensus 86 ~~~~~~Gad~vTvH~~~g-~~~l~~~~~~~~~~G~~~~~~l~v~~~ts~~~~~l~~~~~~~~~~d~Vl~ma~~~~~~G~~ 164 (245)
T 1eix_A 86 AAAADLGVWMVNVHASGG-ARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLD 164 (245)
T ss_dssp HHHHHHTCSEEEEBGGGC-HHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCS
T ss_pred HHHHhCCCCEEEEeccCC-HHHHHHHHHHHHHcCCCCCcEEEEEecCCCCHHHHHHhccCCCHHHHHHHHHHHHHHcCCC
Confidence 999999999999999973 3448899999999998 66 445555 4455778776 455788999988 7888888
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.|++...+ ++++|+.+++ ..|.|||||+++ |+++++++|||++|+||+||+++||.++++++++
T Consensus 165 g~V~~~~e-i~~lr~~~~~----~~i~v~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~l~~ 239 (245)
T 1eix_A 165 GVVCSAQE-AVRFKQVFGQ----EFKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINA 239 (245)
T ss_dssp EEECCGGG-HHHHHHHHCS----SSEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHH
T ss_pred eEEeCHHH-HHHHHHhcCC----CCEEEECCcCCCCCCccchhccCCHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHH
Confidence 89988887 8888888742 468999999999 9999999999999999999999999999999998
Q ss_pred hcCc
Q 023494 273 SKRP 276 (281)
Q Consensus 273 ~~~~ 276 (281)
.+..
T Consensus 240 ~i~~ 243 (245)
T 1eix_A 240 SLQR 243 (245)
T ss_dssp HTC-
T ss_pred HHHh
Confidence 7653
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-32 Score=239.82 Aligned_cols=200 Identities=19% Similarity=0.222 Sum_probs=176.2
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEe-eeCccccc-ccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcC
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDV-MDGRFVPN-ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAG 138 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDI-mDG~fvpn-~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aG 138 (281)
-++|+|+.+++++++.+++.+ + |+|+ |+|+ |+ +++|++.++++|+. ++.|+++|+|+.++.++ ++.+.++|
T Consensus 3 li~a~D~~~~~~~~~~~~~~~-~--~~diie~G~--p~~~~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~G 77 (211)
T 3f4w_A 3 LQLALDELTLPEAMVFMDKVV-D--DVDIIEVGT--PFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAG 77 (211)
T ss_dssp EEEEECSCCHHHHHHHHHHHG-G--GCSEEEECH--HHHHHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred EEEEeCCCCHHHHHHHHHHhh-c--CccEEEeCc--HHHHhccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcC
Confidence 378999999999999998874 4 7888 7886 88 79999999999987 78999999999998876 89999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEE-ECCCCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla-i~p~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|++++|.+.. .+++.++++.++++|+++++. ++|.|+.+.++.+.+. +|+|. ++||++||.+.+..+++++++
T Consensus 78 ad~v~v~~~~~-~~~~~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~~~~g~d~i~---v~~g~~g~~~~~~~~~~i~~l 153 (211)
T 3f4w_A 78 ADYVTVLGVTD-VLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLA---VHTGTDQQAAGRKPIDDLITM 153 (211)
T ss_dssp CSEEEEETTSC-HHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHHTCCEEE---EECCHHHHHTTCCSHHHHHHH
T ss_pred CCEEEEeCCCC-hhHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHcCCCEEE---EcCCCcccccCCCCHHHHHHH
Confidence 99999999852 366789999999999999996 6888888888888775 99874 479999998877678889988
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++.+. ++++.++|||+++++.++.++|||.+|+||+||+++||.++++++++.++
T Consensus 154 ~~~~~----~~~i~~~gGI~~~~~~~~~~~Gad~vvvGsai~~~~d~~~~~~~l~~~~~ 208 (211)
T 3f4w_A 154 LKVRR----KARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLL 208 (211)
T ss_dssp HHHCS----SCEEEEESSCCTTTHHHHHTTCCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHcC----CCcEEEECCCCHHHHHHHHHcCCCEEEECHHHcCCCCHHHHHHHHHHHHh
Confidence 88753 47899999999999999999999999999999999999999999988765
|
| >3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-31 Score=232.99 Aligned_cols=198 Identities=18% Similarity=0.147 Sum_probs=164.7
Q ss_pred EEEeccCccCHHHHHHHHHHc--CCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecC-hhhHHHHHHHc
Q 023494 62 PSILSANFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVE-PEQRVPDFIKA 137 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~d-p~~~i~~~~~a 137 (281)
.-++|+|+.+++++++.+++. |++|+|+ +++.| +++|+..+++||+.+ +.++++|+|+.| |..|++.+.++
T Consensus 2 ~li~a~d~~~~~~~~~~~~~~~~~v~~iev--~~~~~---~~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~ 76 (207)
T 3ajx_A 2 KLQVAIDLLSTEAALELAGKVAEYVDIIEL--GTPLI---KAEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKA 76 (207)
T ss_dssp EEEEEECCSCHHHHHHHHHHHGGGCSEEEE--CHHHH---HHHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHT
T ss_pred eEEEEeCCCCHHHHHHHHHHhhccCCEEEE--CcHHH---HhhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhC
Confidence 458999999999999888754 4688655 77654 679999999999875 789999999999 88889999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC-CCCCHHHHHHhhc-cCCEE-EEEeecCCCCCCccchhHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PATSLSAIECVLD-VVDLV-LIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~-p~t~ie~~~~~l~-~vD~I-lvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
|||++++|.+.. .+++.++++.++++|+++|+++. ++||-+.++.+.+ .+|+| +.|++.|++.|+++.+ ++|+
T Consensus 77 Gad~v~vh~~~~-~~~~~~~~~~~~~~g~~~gv~~~s~~~p~~~~~~~~~~g~d~v~~~~~~~~~~~g~~~~~---~~i~ 152 (207)
T 3ajx_A 77 GADLVTVLGSAD-DSTIAGAVKAAQAHNKGVVVDLIGIEDKATRAQEVRALGAKFVEMHAGLDEQAKPGFDLN---GLLA 152 (207)
T ss_dssp TCSEEEEETTSC-HHHHHHHHHHHHHHTCEEEEECTTCSSHHHHHHHHHHTTCSEEEEECCHHHHTSTTCCTH---HHHH
T ss_pred CCCEEEEeccCC-hHHHHHHHHHHHHcCCceEEEEecCCChHHHHHHHHHhCCCEEEEEecccccccCCCchH---HHHH
Confidence 999999999862 36788899999999999999763 3344443444322 48999 8888888888888765 7777
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+++.. ++++.++|||+++|+.+++++|||++|+||+||+++||.++++++++.+
T Consensus 153 ~~~~~------~~pi~v~GGI~~~~~~~~~~aGad~vvvGsaI~~~~dp~~~~~~~~~~~ 206 (207)
T 3ajx_A 153 AGEKA------RVPFSVAGGVKVATIPAVQKAGAEVAVAGGAIYGAADPAAAAKELRAAI 206 (207)
T ss_dssp HHHHH------TSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHTC
T ss_pred HhhCC------CCCEEEECCcCHHHHHHHHHcCCCEEEEeeeccCCCCHHHHHHHHHHHh
Confidence 77654 3689999999999999999999999999999999999999999998764
|
| >2yyu_A Orotidine 5'-phosphate decarboxylase; TIM barrel, structural genomics, NPPSFA, national project on structural and functional analyses; HET: C5P; 2.20A {Geobacillus kaustophilus} PDB: 2yyt_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.6e-33 Score=249.42 Aligned_cols=201 Identities=17% Similarity=0.235 Sum_probs=173.2
Q ss_pred eEEEeccCccCHHHHHHHHHHcC--CCe--EEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhh---HHH
Q 023494 61 SPSILSANFAKLGEQVKAVELAG--CDW--IHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQ---RVP 132 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G--~d~--iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~---~i~ 132 (281)
++|++|+|+.+++++++.+++.| ++| +|+|++ ++||+..++.||+. +.+++|+||| ..|.. |++
T Consensus 5 ~~lilalD~~~l~~~~~~v~~~~~~v~~~Kv~~d~~-------~~~G~~~v~~lr~~~~~v~lD~kl~-Dip~t~~~~~~ 76 (246)
T 2yyu_A 5 TPFIVALDFPSKQEVERFLRPFAGTPLFVKVGMELY-------YQEGPAIVAFLKEQGHAVFLDLKLH-DIPNTVKQAMK 76 (246)
T ss_dssp CCEEEECCCSSHHHHHHHHGGGTTSCCEEEECHHHH-------HHHTHHHHHHHHHTTCEEEEEEEEC-SCHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHHhcccccEEEeCHHHH-------HHhCHHHHHHHHHCCCeEEEEeecc-cchHHHHHHHH
Confidence 58999999999999999999887 589 788764 78999999999997 6789999999 77766 889
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHH---cCCcE--EEEECCCCCH--HHH-HHh---hccCCEEEEEeec-CCC
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKD---LGAKA--GVVLNPATSL--SAI-ECV---LDVVDLVLIMSVN-PGF 200 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~---~G~k~--Glai~p~t~i--e~~-~~~---l~~vD~IlvmsV~-pG~ 200 (281)
.+.++|||++|||.|.. ...+.++++.+++ +|++. +++++|.|+. +.+ +++ .+..|+|+.|+++ |++
T Consensus 77 ~~~~~Gad~vTvH~~~g-~~~l~~~~~~~~~~~~~G~~~~~~lav~~~Ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~ 155 (246)
T 2yyu_A 77 GLARVGADLVNVHAAGG-RRMMEAAIEGLDAGTPSGRMRPRCIAVTQLTSTDERMLHEELWISRPLVETVAHYAALAKES 155 (246)
T ss_dssp HHHHTTCSEEEEEGGGC-HHHHHHHHHHHHHHSCSSSCCCEEEEESSCTTCCHHHHHHTSCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHhcCCCEEEEECCCC-HHHHHHHHHHHHhhcccCCcCCCEEEEEeCCCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999973 3347899999999 78663 5789999985 667 665 4557889999886 788
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHH
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
++|.|++...+ ++++|+.++ ..+ |.|||||+++ |+.+++++|||++|+||+||+++||.+++++
T Consensus 156 G~~g~V~~~~e-i~~lr~~~~---~~~-i~V~gGI~~~g~~~~dq~rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~ 230 (246)
T 2yyu_A 156 GLDGVVCSANE-AAFIKERCG---ASF-LAVTPGIRFADDAAHDQVRVVTPRKARALGSDYIVIGRSLTRAADPLRTYAR 230 (246)
T ss_dssp TCCEEECCHHH-HHHHHHHHC---TTS-EEEECCCCCCC-------CCCCHHHHHHHTCSEEEECHHHHTSSSHHHHHHH
T ss_pred CCCEEEeCHHH-HHHHHHhcC---CCC-EEEeCCcCCCCCCcccccccCCHHHHHHcCCCEEEECHhhcCCCCHHHHHHH
Confidence 88889988887 888888764 234 8999999999 9999999999999999999999999999999
Q ss_pred HHHhcC
Q 023494 270 IKTSKR 275 (281)
Q Consensus 270 l~~~~~ 275 (281)
+++.+.
T Consensus 231 l~~~i~ 236 (246)
T 2yyu_A 231 LQHEWN 236 (246)
T ss_dssp HHHHCC
T ss_pred HHHHHH
Confidence 998765
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.1e-31 Score=236.90 Aligned_cols=205 Identities=18% Similarity=0.258 Sum_probs=174.4
Q ss_pred CCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCcccc-----------cccCCHHHHHHcCcCCCC
Q 023494 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVP-----------NITIGPLVVDALRPVTDL 116 (281)
Q Consensus 56 ~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvp-----------n~~~G~~~I~~ir~~t~~ 116 (281)
++..|+|||+++|+. ++.+.++.++++ +|+||+| +|||+|++ |+.++.+.++++|+.+++
T Consensus 3 ~~~~~~~~i~~~~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~ 81 (248)
T 1geq_A 3 KDGSLIPYLTAGDPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSST 81 (248)
T ss_dssp CTTEEEEEEETTSSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCC
T ss_pred CCccEEEEEeCCCCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCC
Confidence 345799999999996 888999999999 9999999 99999999 888999999999988765
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD 189 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD 189 (281)
| +|+|+ .|| .++++.+.++|||+|++|.+. .+++.++++.++++|.++++.++|.|+.+.++.+...+|
T Consensus 82 p--v~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~--~~~~~~~~~~~~~~g~~~~~~i~~~t~~e~~~~~~~~~d 157 (248)
T 1geq_A 82 P--IVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLP--VFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTT 157 (248)
T ss_dssp C--EEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCC--GGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCS
T ss_pred C--EEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCC--hhhHHHHHHHHHHhCCCeEEEECCCCHHHHHHHHHhcCC
Confidence 4 88899 488 789999999999999999885 567899999999999999999999999999999888888
Q ss_pred -EEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-hcHHHHHHcCCcEEEEcccccCCC--CH
Q 023494 190 -LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFGAK--DY 263 (281)
Q Consensus 190 -~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~~~~aGAD~~VvGSaIf~a~--dp 263 (281)
+|.+|++ ||++|++ +.+..+++++++++.. +++|.++|||+. +++.++.++|||.+|+||+||++. ++
T Consensus 158 ~~i~~~~~-~G~~g~~~~~~~~~~~~i~~l~~~~-----~~pi~~~GGI~~~e~i~~~~~~Gad~vivGsai~~~~~~~~ 231 (248)
T 1geq_A 158 GFVYLVSL-YGTTGAREEIPKTAYDLLRRAKRIC-----RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVKIIGEKG 231 (248)
T ss_dssp SEEEEECC-C-------CCCHHHHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHHHG
T ss_pred CeEEEEEC-CccCCCCCCCChhHHHHHHHHHhhc-----CCCEEEEeecCCHHHHHHHHHcCCCEEEEcHHHHhhHhhCh
Confidence 9989999 9988876 7788899999998875 378999999997 999999999999999999999752 33
Q ss_pred HHHHHHHHH
Q 023494 264 AEAIKGIKT 272 (281)
Q Consensus 264 ~~~~~~l~~ 272 (281)
++++++.+
T Consensus 232 -~~~~~~~~ 239 (248)
T 1geq_A 232 -REATEFLK 239 (248)
T ss_dssp -GGCHHHHH
T ss_pred -HHHHHHHH
Confidence 44444443
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=99.97 E-value=2.8e-30 Score=234.87 Aligned_cols=194 Identities=15% Similarity=0.136 Sum_probs=169.7
Q ss_pred CceEeEEEeccCc--cCHHHHHHHHHHcCCCeEEEEe------eeCccccc-----------ccCCHHHHHHcCcC-CCC
Q 023494 57 DIIVSPSILSANF--AKLGEQVKAVELAGCDWIHVDV------MDGRFVPN-----------ITIGPLVVDALRPV-TDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~--~~l~~~l~~l~~~G~d~iHiDI------mDG~fvpn-----------~~~G~~~I~~ir~~-t~~ 116 (281)
+..+.|+|+++|+ .++.+.++.+.++|+|+||+|+ |||+|+++ +.++++.++++|+. ++.
T Consensus 16 ~~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 95 (268)
T 1qop_A 16 EGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTI 95 (268)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSS
T ss_pred CceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 4579999999999 6777889999999999999999 99999996 56677999999987 777
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD 189 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD 189 (281)
| +|+|+ .|| .+|++.+.++|+|++++|.+. .+++.++++.++++|++.+..++|.|+.++++.+....+
T Consensus 96 P--v~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~--~e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~~i~~~~~ 171 (268)
T 1qop_A 96 P--IGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVP--VEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYGR 171 (268)
T ss_dssp C--EEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCC--GGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCC
T ss_pred C--EEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCC--HHHHHHHHHHHHHcCCcEEEEECCCCCHHHHHHHHhhCC
Confidence 7 77787 577 678999999999999999884 577899999999999999999999999999999887655
Q ss_pred -EEEEEeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 190 -LVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 190 -~IlvmsV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++++|++. |++|| ++.+...++|+++|+.. +.+|.|+|||+ ++++.+++.+|||++|+||+|++.
T Consensus 172 g~v~~~s~~-G~tG~~~~~~~~~~~~i~~lr~~~-----~~pi~vggGI~t~e~~~~~~~agAD~vVVGSai~~~ 240 (268)
T 1qop_A 172 GYTYLLSRS-GVTGAENRGALPLHHLIEKLKEYH-----AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKI 240 (268)
T ss_dssp SCEEEESSS-SCCCSSSCC--CCHHHHHHHHHTT-----CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHH
T ss_pred CcEEEEecC-CcCCCccCCCchHHHHHHHHHhcc-----CCcEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhh
Confidence 88888887 99998 67788889999998864 47899999999 999999999999999999999864
|
| >1dbt_A Orotidine 5'-phosphate decarboxylase; UMP, TIM barrel, lyase; HET: U5P; 2.40A {Bacillus subtilis} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-32 Score=242.94 Aligned_cols=200 Identities=20% Similarity=0.291 Sum_probs=168.4
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCe--EEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh---hHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDW--IHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE---QRVPD 133 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~--iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~---~~i~~ 133 (281)
+.++|+|+.+++++++.+++.| ++| +|+|++ ++||+..++.||+. +.+++|+||| ..|. +|++.
T Consensus 5 ~lilalD~~~l~~~~~~~~~~~~~v~~~Kv~~d~~-------~~~G~~~v~~l~~~~~~v~lD~kl~-Dip~t~~~~~~~ 76 (239)
T 1dbt_A 5 LPIIALDFASAEETLAFLAPFQQEPLFVKVGMELF-------YQEGPSIVKQLKERNCELFLDLKLH-DIPTTVNKAMKR 76 (239)
T ss_dssp SCEEECCCSSHHHHHHHTGGGTTSCCEEEECHHHH-------HHHTHHHHHHHHHTTCEEEEEEEEC-SCHHHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHhcccCcEEEECHHHH-------HHhCHHHHHHHHHCCCcEEEEeccc-cchHHHHHHHHH
Confidence 4689999999999999999887 599 888874 78999999999997 6789999999 7776 48889
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHc---CCc----EEEEECCCCCHHHH-HHh-h--ccCCEEEEEeec-CCCC
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAK----AGVVLNPATSLSAI-ECV-L--DVVDLVLIMSVN-PGFG 201 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k----~Glai~p~t~ie~~-~~~-l--~~vD~IlvmsV~-pG~~ 201 (281)
+.++|||++|||.|.. ...+.++++.++++ |++ +++.++++++.+.+ +++ + +..|+|+.|+++ |+++
T Consensus 77 ~~~~Gad~vtvH~~~g-~~~l~~~~~~~~~~~~~g~~~~~~~~V~~~ts~~~~~l~~~~~~~~~~~d~Vl~ma~~~~~~G 155 (239)
T 1dbt_A 77 LASLGVDLVNVHAAGG-KKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESG 155 (239)
T ss_dssp HHTTTCSEEEEEGGGC-HHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCEEEEeCcCC-HHHHHHHHHHHHhhhccCCCCccEEEEEEcCCCCHHHHHHHhccCCCHHHHHHHHHHHHHHhC
Confidence 9999999999999973 33368999999998 986 55556666666777 765 5 447889999885 7888
Q ss_pred CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcH-----------HHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA-----------YKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i-----------~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
+|.|++.. ++++++|+.++ +..|.|||||++++. .+++++|||++|+||+||+++||.++++++
T Consensus 156 ~~g~v~~~-~~i~~lr~~~~----~~~i~v~gGI~~~~~~~~dq~rv~tp~~a~~aGad~iVvGr~I~~a~dp~~a~~~l 230 (239)
T 1dbt_A 156 LDGVVCSV-HEAKAIYQAVS----PSFLTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAV 230 (239)
T ss_dssp CSEEECCG-GGHHHHTTTSC----TTCEEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHH
T ss_pred CCEEEECH-HHHHHHHHhcC----CCcEEEeCCcCCCCCCccceeccCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHH
Confidence 88898777 78888887652 246899999999998 899999999999999999999999999999
Q ss_pred HHhcC
Q 023494 271 KTSKR 275 (281)
Q Consensus 271 ~~~~~ 275 (281)
++.+.
T Consensus 231 ~~~i~ 235 (239)
T 1dbt_A 231 RLEWE 235 (239)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88654
|
| >3exr_A RMPD (hexulose-6-phosphate synthase); beta barrel, lyase; 1.70A {Streptococcus mutans} SCOP: c.1.2.3 PDB: 3exs_A* 3ext_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2e-30 Score=230.06 Aligned_cols=204 Identities=16% Similarity=0.205 Sum_probs=165.3
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CC--CCeeEEEEecChhhHHHHHHHc
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TD--LPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~--~~idaHLmv~dp~~~i~~~~~a 137 (281)
++-++|+|+.+++++++.+++.|....++.|+++.| +++|++.|++||+. ++ +++|+||| ..|..+.+.++++
T Consensus 6 ~~livAlD~~~~~~a~~~~~~~~~~~~~ikvg~~lf---~~~G~~~v~~l~~~~p~~~iflDlKl~-Dip~t~~~~~~~~ 81 (221)
T 3exr_A 6 PNLQVALDHSNLKGAITAAVSVGNEVDVIEAGTVCL---LQVGSELVEVLRSLFPDKIIVADTKCA-DAGGTVAKNNAVR 81 (221)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHGGGCSEEEECHHHH---HHHCTHHHHHHHHHCTTSEEEEEEEEC-SCHHHHHHHHHTT
T ss_pred CCEEEEeCCCCHHHHHHHHHhhCCCceEEEECHHHH---HhcCHHHHHHHHHhCCCCcEEEEEEee-ccHHHHHHHHHHc
Confidence 345899999999999999998773333455688766 68999999999875 34 67888888 7787788889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCE-EEEEeecCCCCCCccchhHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDL-VLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~-IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
|||++|||++.. ...++++++.+++.| +++|++++++|+.+.++++++ .+|+ ++.|+..++.+|+... .++
T Consensus 82 Gad~vtVH~~~g-~~~l~~a~~~~~~~g~~~~~~~Vt~lts~~~~~~~~~~~~~~~~~v~~~a~~~~~~Gvv~s---~~e 157 (221)
T 3exr_A 82 GADWMTCICSAT-IPTMKAARKAIEDINPDKGEIQVELYGDWTYDQAQQWLDAGISQAIYHQSRDALLAGETWG---EKD 157 (221)
T ss_dssp TCSEEEEETTSC-HHHHHHHHHHHHHHCTTTCEEEEECCSSCCHHHHHHHHHTTCCEEEEECCHHHHHHTCCCC---HHH
T ss_pred CCCEEEEeccCC-HHHHHHHHHHHHhcCCCcceEEEEEcCCCCHHHHHHHHcCCHHHHHHHHHHhcCCCccccC---HHH
Confidence 999999999973 566899999999988 899999999999999888876 5655 4445566665665433 344
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++.+|+.+.. +++|+|||||++++++.+.++|||++|+||+||+++||.++++++++.++
T Consensus 158 ~~~ir~~~~~---~~~i~v~gGI~~~~~~~~~~aGad~~VvG~~I~~a~dp~~a~~~~~~~~~ 217 (221)
T 3exr_A 158 LNKVKKLIEM---GFRVSVTGGLSVDTLKLFEGVDVFTFIAGRGITEAKNPAGAARAFKDEIK 217 (221)
T ss_dssp HHHHHHHHHH---TCEEEEESSCCGGGGGGGTTCCCSEEEECHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC---CceEEEECCCCHHHHHHHHHCCCCEEEECchhhCCCCHHHHHHHHHHHHH
Confidence 5555555432 57899999999999999999999999999999999999999999988664
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.9e-27 Score=214.86 Aligned_cols=206 Identities=17% Similarity=0.280 Sum_probs=171.1
Q ss_pred CceEeEEEeccCc--cCHHHHHHHHHHcCCCeEEEE------eeeCcccc-----------cccCCHHHHHHcCcCCCCC
Q 023494 57 DIIVSPSILSANF--AKLGEQVKAVELAGCDWIHVD------VMDGRFVP-----------NITIGPLVVDALRPVTDLP 117 (281)
Q Consensus 57 ~~~i~pSila~D~--~~l~~~l~~l~~~G~d~iHiD------ImDG~fvp-----------n~~~G~~~I~~ir~~t~~~ 117 (281)
+..+.|++++.|+ .++.+.++.++++|+|+||+| +|||+|++ +..++.+.++++|+.++.|
T Consensus 17 ~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~P 96 (262)
T 1rd5_A 17 KTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCP 96 (262)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSC
T ss_pred CceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 4468999999999 567788889999999999999 69999988 5566788999999887777
Q ss_pred eeEEEEe-cChhh--HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEE
Q 023494 118 LDVHLMI-VEPEQ--RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLI 193 (281)
Q Consensus 118 idaHLmv-~dp~~--~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~Ilv 193 (281)
+|+|+ .||.. .++.+.++|+|++++|.+. .+++.++++.++++|++..+.++|.|+.+.++.+... .+++++
T Consensus 97 --v~~m~~~~~~~~~~~~~a~~aGadgv~v~d~~--~~~~~~~~~~~~~~g~~~i~~~a~~t~~e~~~~~~~~~~g~v~~ 172 (262)
T 1rd5_A 97 --VVLLSYYKPIMFRSLAKMKEAGVHGLIVPDLP--YVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYL 172 (262)
T ss_dssp --EEEECCSHHHHSCCTHHHHHTTCCEEECTTCB--TTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEE
T ss_pred --EEEEecCcHHHHHHHHHHHHcCCCEEEEcCCC--hhhHHHHHHHHHHcCCceEEEECCCCCHHHHHHHHhcCCCeEEE
Confidence 56686 46642 3566999999999999774 5779999999999999999999999999988887665 458999
Q ss_pred EeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC----CCHHHH
Q 023494 194 MSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA----KDYAEA 266 (281)
Q Consensus 194 msV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a----~dp~~~ 266 (281)
+++ +|++|+ .+.+..+++++++++.. +++|.++|||+ ++++.++.++|||.+|+||+|++. .++.+.
T Consensus 173 ~s~-~G~tG~~~~~~~~~~~~i~~v~~~~-----~~pI~vgGGI~~~e~~~~~~~~GAdgvvVGSai~~~~~~~~~~~~~ 246 (262)
T 1rd5_A 173 VSV-NGVTGPRANVNPRVESLIQEVKKVT-----NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQG 246 (262)
T ss_dssp ECS-SCCBCTTSCBCTHHHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHH
T ss_pred ecC-CCCCCCCcCCCchHHHHHHHHHhhc-----CCeEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhHHHhccChhHH
Confidence 887 898887 67788888999998864 47899999999 999999999999999999999964 355544
Q ss_pred HHHHHH
Q 023494 267 IKGIKT 272 (281)
Q Consensus 267 ~~~l~~ 272 (281)
.+++++
T Consensus 247 ~~~~~~ 252 (262)
T 1rd5_A 247 LRRLEE 252 (262)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.1e-27 Score=214.31 Aligned_cols=209 Identities=17% Similarity=0.190 Sum_probs=171.5
Q ss_pred CceEeEEEeccCc--cCHHHHHHHHHHcCCCeEEEE------eeeCccccccc-----CC------HHHHHHcCcC-CCC
Q 023494 57 DIIVSPSILSANF--AKLGEQVKAVELAGCDWIHVD------VMDGRFVPNIT-----IG------PLVVDALRPV-TDL 116 (281)
Q Consensus 57 ~~~i~pSila~D~--~~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn~~-----~G------~~~I~~ir~~-t~~ 116 (281)
+..+.|+|+++|+ ....+.++.|+++|+|+||++ ++||+++++.+ .| +++++++|+. ++.
T Consensus 17 ~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~ 96 (267)
T 3vnd_A 17 KGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDM 96 (267)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 4579999999999 578888999999999999999 99999998754 66 7889999975 677
Q ss_pred CeeEEEEec-Ch------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC-
Q 023494 117 PLDVHLMIV-EP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV- 188 (281)
Q Consensus 117 ~idaHLmv~-dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v- 188 (281)
| +|||+. || ++|++.+.++|+|++++|.. +.++..++++.++++|++....++|.|+.++++.+.+..
T Consensus 97 P--ivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dl--p~ee~~~~~~~~~~~gl~~i~liaP~t~~eri~~i~~~~~ 172 (267)
T 3vnd_A 97 P--IGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADV--PVEESAPFSKAAKAHGIAPIFIAPPNADADTLKMVSEQGE 172 (267)
T ss_dssp C--EEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTS--CGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHCC
T ss_pred C--EEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCC--CHhhHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHhCC
Confidence 7 667986 88 67899999999999999988 467789999999999999999999999999999998876
Q ss_pred CEEEEEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-----C
Q 023494 189 DLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-----K 261 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-----~ 261 (281)
++|.++++.+.++.+. +.+...+.++++|+.. +.++.|+|||+ ++++++.+++|||++|+||+|++. +
T Consensus 173 gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~-----~~pv~vGfGI~~~e~~~~~~~~gADgvVVGSaiv~~i~~~~~ 247 (267)
T 3vnd_A 173 GYTYLLSRAGVTGTESKAGEPIENILTQLAEFN-----APPPLLGFGIAEPEQVRAAIKAGAAGAISGSAVVKIIEAHQH 247 (267)
T ss_dssp SCEEESCCCCCC--------CHHHHHHHHHTTT-----CCCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHTSS
T ss_pred CcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc-----CCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHHHHHHHhcc
Confidence 5888888886666554 6666778888888763 46899999996 999998899999999999999862 2
Q ss_pred CHHHHHHHHHHhc
Q 023494 262 DYAEAIKGIKTSK 274 (281)
Q Consensus 262 dp~~~~~~l~~~~ 274 (281)
++.+..+.+++.+
T Consensus 248 ~~~~~~~~~~~~~ 260 (267)
T 3vnd_A 248 DEATLLAKLAEFT 260 (267)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 4555555555443
|
| >3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ... | Back alignment and structure |
|---|
Probab=99.90 E-value=2.7e-24 Score=191.46 Aligned_cols=202 Identities=19% Similarity=0.238 Sum_probs=145.2
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecCh---hhHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEP---EQRVPDF 134 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp---~~~i~~~ 134 (281)
+-++|+|+.+++++++.+++.+ ++|+|++ ++.| +++|+..+++||+. +.+++|+|+| .-| ..|++.+
T Consensus 14 ~lilAlD~~~~~~a~~~v~~~~~~v~~~Kvg--~~lf---~~~G~~~v~~l~~~~g~~v~lD~Kl~-DipnTv~~~~~~~ 87 (228)
T 3m47_A 14 RLILAMDLMNRDDALRVTGEVREYIDTVKIG--YPLV---LSEGMDIIAEFRKRFGCRIIADFKVA-DIPETNEKICRAT 87 (228)
T ss_dssp GEEEECCCCSHHHHHHHHHTTTTTCSEEEEE--HHHH---HHHCTHHHHHHHHHHCCEEEEEEEEC-SCHHHHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHcCCcccEEEEc--HHHH---HhcCHHHHHHHHhcCCCeEEEEEeec-ccHhHHHHHHHHH
Confidence 4589999999999999999877 8999994 3544 58999999999984 5578888888 333 4589999
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+++|||++|+|.+.. .+.++.+++.+++.|.++-+ +.+.++.+....+.+.++.+..|+.++|..|.-......+.++
T Consensus 88 ~~~gad~vtvh~~~G-~~~l~~~~~~~~~~g~~v~v-Lt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~~at~~~e~~ 165 (228)
T 3m47_A 88 FKAGADAIIVHGFPG-ADSVRACLNVAEEMGREVFL-LTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLS 165 (228)
T ss_dssp HHTTCSEEEEESTTC-HHHHHHHHHHHHHHTCEEEE-ECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEECCSSCHHHHH
T ss_pred HhCCCCEEEEeccCC-HHHHHHHHHHHHhcCCCeEE-EEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEECCCChHHHH
Confidence 999999999999973 56688999999998876443 3434443211111122344455677888877433322245666
Q ss_pred HHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
++|+..+ .++.+ |++||+++ +. +++++|+|++|+||+||+++||.++++++++.++.
T Consensus 166 ~ir~~~~---~~~~i-v~PGI~~~g~~p-~~~~aGad~iVvGr~I~~a~dp~~a~~~~~~~~~~ 224 (228)
T 3m47_A 166 RLREIIG---QDSFL-ISPGVGAQGGDP-GETLRFADAIIVGRSIYLADNPAAAAAGAIESIKD 224 (228)
T ss_dssp HHHHHHC---SSSEE-EECC----------CGGGTCSEEEECHHHHTSSCHHHHHHHHHHHC--
T ss_pred HHHHhcC---CCCEE-EecCcCcCCCCH-hHHHcCCCEEEECHHHhCCCCHHHHHHHHHHHHHH
Confidence 6776653 24667 99999987 78 88999999999999999999999999999998764
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-22 Score=180.46 Aligned_cols=187 Identities=14% Similarity=0.185 Sum_probs=148.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.++++|+|++|++.+|++|.++..+ +.++++++.++.|+.+|.++.+|++ ++.+.++|||.|++|.+.
T Consensus 33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~--~~i~~i~~~~~ipv~v~ggI~~~~~-~~~~l~~Gad~V~lg~~~-- 107 (244)
T 1vzw_A 33 SPLEAALAWQRSGAEWLHLVDLDAAFGTGDNR--ALIAEVAQAMDIKVELSGGIRDDDT-LAAALATGCTRVNLGTAA-- 107 (244)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHHTSCCCH--HHHHHHHHHCSSEEEEESSCCSHHH-HHHHHHTTCSEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEecCchhhcCCChH--HHHHHHHHhcCCcEEEECCcCCHHH-HHHHHHcCCCEEEECchH--
Confidence 55666788889999999999999999988877 8899999888899999999999985 888999999999999985
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCC--------------CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPA--------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~--------------t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
..++..+.+.+++.|.++++.+++. ++.+.++++.+. +|.|+++++.++..+|.+..+.++++
T Consensus 108 l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~~~i-- 185 (244)
T 1vzw_A 108 LETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGTLQGPNLELLKNV-- 185 (244)
T ss_dssp HHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC-------CCCHHHHHHH--
T ss_pred hhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCCCHHHHHHHHHhCCCCEEEEeccCcccccCCCCHHHHHHH--
Confidence 4567777888888888888777765 667777777665 99999999999877777755555444
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc---CCcEEEEcccccCCC-CHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA---GANALVAGSAVFGAK-DYAEAIKGI 270 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a---GAD~~VvGSaIf~a~-dp~~~~~~l 270 (281)
++. .+++|.++|||+ ++++.++.++ |||.+++||+++..+ ++.+..+.+
T Consensus 186 -~~~-----~~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~vG~al~~~~~~~~~~~~~~ 239 (244)
T 1vzw_A 186 -CAA-----TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEAT 239 (244)
T ss_dssp -HHT-----CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHHH
T ss_pred -HHh-----cCCCEEEECCCCCHHHHHHHHhhccCCCceeeeeHHHHcCCCCHHHHHHHh
Confidence 332 247899999999 5999999999 999999999999876 566555543
|
| >1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.9e-22 Score=175.26 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=141.9
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC--HHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G--~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+.|+||.++.| ++++ ++.+.++|++++|+|.||. +++ .+.++.+++.+ .+.+ |+|+++ +++.+.
T Consensus 20 ~~It~~~~~~~--~l~~-~~~~~~~G~~~v~lr~~~~------~~~~~~~~~~~l~~~~-~~~~-~l~v~~---~~~~a~ 85 (221)
T 1yad_A 20 HAITDDSKPVE--ELAR-IIITIQNEVDFIHIRERSK------SAADILKLLDLIFEGG-IDKR-KLVMNG---RVDIAL 85 (221)
T ss_dssp EEECCSCSCHH--HHHH-HHHHHGGGCSEEEECCTTS------CHHHHHHHHHHHHHTT-CCGG-GEEEES---CHHHHH
T ss_pred EEEECCCcCcc--hHHH-HHHHHHCCCCEEEEccCCC------CHHHHHHHHHHHHHhc-CcCC-eEEEeC---hHHHHH
Confidence 56889988876 5655 7888889999999998774 233 67788888764 4566 999986 778899
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|+|+|++|.+.. .+ +.++.++. |+.+|+.++ |+.+..+.....+|||+++++.++.......+..++.+++
T Consensus 86 ~~gad~v~l~~~~~---~~-~~~~~~~~-~~~ig~sv~--t~~~~~~a~~~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~ 158 (221)
T 1yad_A 86 FSTIHRVQLPSGSF---SP-KQIRARFP-HLHIGRSVH--SLEEAVQAEKEDADYVLFGHVFETDCKKGLEGRGVSLLSD 158 (221)
T ss_dssp TTTCCEEEECTTSC---CH-HHHHHHCT-TCEEEEEEC--SHHHHHHHHHTTCSEEEEECCC----------CHHHHHHH
T ss_pred HcCCCEEEeCCCcc---CH-HHHHHHCC-CCEEEEEcC--CHHHHHHHHhCCCCEEEECCccccCCCCCCCCCCHHHHHH
Confidence 99999999998742 22 34455444 889999874 4444333334569999998775432111012456777777
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+++.. ++++.++||||++|+.+++++|||.+++||++++++||.+.++++++.++
T Consensus 159 ~~~~~-----~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~ 213 (221)
T 1yad_A 159 IKQRI-----SIPVIAIGGMTPDRLRDVKQAGADGIAVMSGIFSSAEPLEAARRYSRKLK 213 (221)
T ss_dssp HHHHC-----CSCEEEESSCCGGGHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHhC-----CCCEEEECCCCHHHHHHHHHcCCCEEEEhHHhhCCCCHHHHHHHHHHHHH
Confidence 76653 47899999999999999999999999999999999999999999887654
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.1e-21 Score=172.36 Aligned_cols=185 Identities=13% Similarity=0.169 Sum_probs=149.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.++++|+|+||++.+|++|.++..+ +.++++++.++.|+.+|.++.+|++ ++.+.++|||.|++|.+.
T Consensus 32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~~--~~i~~i~~~~~ipv~v~ggi~~~~~-~~~~l~~Gad~V~lg~~~-- 106 (244)
T 2y88_A 32 SAVDAALGWQRDGAEWIHLVDLDAAFGRGSNH--ELLAEVVGKLDVQVELSGGIRDDES-LAAALATGCARVNVGTAA-- 106 (244)
T ss_dssp EHHHHHHHHHHTTCSEEEEEEHHHHTTSCCCH--HHHHHHHHHCSSEEEEESSCCSHHH-HHHHHHTTCSEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEEcCcccccCCChH--HHHHHHHHhcCCcEEEECCCCCHHH-HHHHHHcCCCEEEECchH--
Confidence 45566778888999999999999999998877 8899999888899999999999985 888999999999999985
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCC------------------CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHH
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPA------------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~------------------t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
..++..+.+.+++.|.++.+.+++. ++.+.++.+.+. +|.|+++++.++..++.+..+.+
T Consensus 107 l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~~~~~g~~~~~~- 185 (244)
T 2y88_A 107 LENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGGDLWDVLERLDSEGCSRFVVTDITKDGTLGGPNLDLL- 185 (244)
T ss_dssp HHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEEEHHHHHHHHHHTTCCCEEEEETTTTTTTSCCCHHHH-
T ss_pred hhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCCCHHHHHHHHHhCCCCEEEEEecCCccccCCCCHHHH-
Confidence 4556667777788887777766654 456777777665 99999999998776666654444
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc---CCcEEEEcccccCCC-CHHHHHH
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA---GANALVAGSAVFGAK-DYAEAIK 268 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a---GAD~~VvGSaIf~a~-dp~~~~~ 268 (281)
+++++. .+++|.++|||+ ++++.++.++ |||.+++||+++..+ ++.+..+
T Consensus 186 --~~l~~~-----~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~vG~al~~~~~~~~~~~~ 240 (244)
T 2y88_A 186 --AGVADR-----TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIVGKALYARRFTLPQALA 240 (244)
T ss_dssp --HHHHTT-----CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHH
T ss_pred --HHHHHh-----CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEEcHHHHCCCcCHHHHHH
Confidence 444432 357899999999 5999999999 999999999999875 4554444
|
| >1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.7e-20 Score=160.76 Aligned_cols=192 Identities=19% Similarity=0.176 Sum_probs=141.4
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC--CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~--G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+.|+|+. +. ++.+.++.+.++|++++|++.. +.+. ..+.++.+++.+. .+.+++++++ +++.+.
T Consensus 18 ~~It~~~-~~---~~~~~~~~~~~~G~~~i~l~~~------~~~~~~~~~~~~~l~~~~~-~~~v~v~v~~---~~~~a~ 83 (215)
T 1xi3_A 18 YVITDRR-LK---PEVESVREALEGGATAIQMRIK------NAPTREMYEIGKTLRQLTR-EYDALFFVDD---RVDVAL 83 (215)
T ss_dssp EEECCTT-TS---CHHHHHHHHHHTTCSEEEECCC------SCCHHHHHHHHHHHHHHHH-HTTCEEEEES---CHHHHH
T ss_pred EEEECCc-hh---hHHHHHHHHHHCCCCEEEECCC------CCCHHHHHHHHHHHHHHHH-HcCCeEEEcC---hHHHHH
Confidence 5688887 54 8888899999999999999743 2222 2566666665432 3567888875 778899
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|+|+|+++.... .+ +.++.++ .++.+|+.+ .|+.+........+|+|+++++.|+.+++.+.+..++.+++
T Consensus 84 ~~gad~v~l~~~~~---~~-~~~~~~~-~~~~~~v~~--~t~~e~~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~l~~ 156 (215)
T 1xi3_A 84 AVDADGVQLGPEDM---PI-EVAKEIA-PNLIIGASV--YSLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRK 156 (215)
T ss_dssp HHTCSEEEECTTSC---CH-HHHHHHC-TTSEEEEEE--SSHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHH
T ss_pred HcCCCEEEECCccC---CH-HHHHHhC-CCCEEEEec--CCHHHHHHHHhcCCCEEEEcCCccCCCCCCCCCcCHHHHHH
Confidence 99999999886531 23 2344444 577888876 34444333333469999999988876555566667788888
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+++.. ++++.++|||+++|+.++.++|+|.+++||++++++||.+.++++++.++
T Consensus 157 l~~~~-----~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~ 211 (215)
T 1xi3_A 157 IVESV-----KIPVVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVE 211 (215)
T ss_dssp HHHHC-----SSCEEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred HHHhC-----CCCEEEECCcCHHHHHHHHHcCCCEEEEhHHHhCCCCHHHHHHHHHHHHh
Confidence 77654 46899999999999999999999999999999999999989999887654
|
| >2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.9e-20 Score=163.07 Aligned_cols=198 Identities=19% Similarity=0.120 Sum_probs=145.2
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC--HHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG--PLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G--~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
-+.|+|+.++.|. +.+.++.+.++|+|++|++.+|+. ...++ .+.++.+++.+. .+.+++++++ +++.+
T Consensus 20 i~~It~~~~~~~~--~~~~~~~~~~~G~~~i~l~~~~~~---~~~~~~~~~~~~~l~~~~~-~~~v~v~v~~---~~~~a 90 (227)
T 2tps_A 20 VYFIMGSNNTKAD--PVTVVQKALKGGATLYQFREKGGD---ALTGEARIKFAEKAQAACR-EAGVPFIVND---DVELA 90 (227)
T ss_dssp EEEEECGGGCSSC--HHHHHHHHHHHTCSEEEECCCSTT---CCCHHHHHHHHHHHHHHHH-HHTCCEEEES---CHHHH
T ss_pred EEEEECCccccch--HHHHHHHHHHCCCCEEEEecCCCC---HhHHHHHHHHHHHHHHHHH-HcCCeEEEcC---HHHHH
Confidence 3568899888776 888899999999999999998873 33444 355666665432 3567788876 77889
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCC-cEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCc-cchhHHHH
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQS-FIESQVKK 212 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~-k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~-f~~~~l~k 212 (281)
.++|+|+|++..+. .++.+. .+..|. .+|+. +.|+.+........+|+|+++++.|+..++. +.+..++.
T Consensus 91 ~~~gad~v~l~~~~---~~~~~~---~~~~g~~~~~~s--~~t~~e~~~a~~~g~d~v~~~~v~~t~~~~~~~~~~~~~~ 162 (227)
T 2tps_A 91 LNLKADGIHIGQED---ANAKEV---RAAIGDMILGVS--AHTMSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSL 162 (227)
T ss_dssp HHHTCSEEEECTTS---SCHHHH---HHHHTTSEEEEE--ECSHHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHH
T ss_pred HHcCCCEEEECCCc---cCHHHH---HHhcCCcEEEEe--cCCHHHHHHHHhCCCCEEEECCCcCCCCCCCCCCccCHHH
Confidence 99999999986553 223222 233564 55554 4555553333334699999999988765544 45556777
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++++..+ ++++.++|||+++|+.++.++|||.+++||++++++||.+.++++++.++
T Consensus 163 l~~~~~~~~----~~pvia~GGI~~~nv~~~~~~Ga~gv~vgs~i~~~~d~~~~~~~~~~~~~ 221 (227)
T 2tps_A 163 IEAVRRQGI----SIPIVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQ 221 (227)
T ss_dssp HHHHHHTTC----CCCEEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHHhCC----CCCEEEEcCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 777766532 26899999999999999999999999999999998999888888887654
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.82 E-value=1e-19 Score=160.89 Aligned_cols=180 Identities=17% Similarity=0.228 Sum_probs=142.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCe---------eEEEEecChhhHHHHHHHcCCCE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~i---------daHLmv~dp~~~i~~~~~aGAd~ 141 (281)
.+.+.++.+.++|++++|+| +++.++.+|+.++.|+ +.|+|+.+|.++++.+.++|||.
T Consensus 37 ~~~~~a~~~~~~G~~~i~~~------------~~~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad~ 104 (234)
T 1yxy_A 37 IMPLMAKAAQEAGAVGIRAN------------SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIAV 104 (234)
T ss_dssp SHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCSE
T ss_pred hHHHHHHHHHHCCCcEeecC------------CHHHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCCE
Confidence 77788899999999999986 5678999999888887 56899999988999999999999
Q ss_pred EEEccccccc---ccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhccCCEE--EEEeecCCCCCCccchhHHHHHH
Q 023494 142 VSVHCEQSST---IHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDVVDLV--LIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 142 Itvh~Ea~~~---~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~~vD~I--lvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
|++|.+.... ..+.++++.+|+. ++.+++ ++.|+.+....+...+|+| .+|+++|+. +.+.+..++.++
T Consensus 105 V~l~~~~~~~~~~~~~~~~i~~i~~~~~~~~v~~--~~~t~~ea~~a~~~Gad~i~~~v~g~~~~~--~~~~~~~~~~i~ 180 (234)
T 1yxy_A 105 IAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMA--DISTFDEGLVAHQAGIDFVGTTLSGYTPYS--RQEAGPDVALIE 180 (234)
T ss_dssp EEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEE--ECSSHHHHHHHHHTTCSEEECTTTTSSTTS--CCSSSCCHHHHH
T ss_pred EEEcccccCCCCCccHHHHHHHHHHhCCCCeEEE--eCCCHHHHHHHHHcCCCEEeeeccccCCCC--cCCCCCCHHHHH
Confidence 9999986311 2568899999988 666555 4455555433344569999 778777754 334444455565
Q ss_pred HHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++. ++++.++|||+ ++++.++.++|||.+++||+||+ |.+.+++|++.++
T Consensus 181 ~~~~~------~ipvia~GGI~s~~~~~~~~~~Gad~v~vGsal~~---p~~~~~~l~~~~~ 233 (234)
T 1yxy_A 181 ALCKA------GIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAITR---PKEIAERFIEALK 233 (234)
T ss_dssp HHHHT------TCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHHC---HHHHHHHHHHHTC
T ss_pred HHHhC------CCCEEEECCCCCHHHHHHHHHCCCCEEEEchHHhC---hHHHHHHHHHHHh
Confidence 55542 47899999999 99999999999999999999997 8889999988765
|
| >1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=99.81 E-value=6.2e-19 Score=154.49 Aligned_cols=182 Identities=15% Similarity=0.194 Sum_probs=139.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCe---------eEEEEecChhhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMIVEPEQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~i---------daHLmv~dp~~~i~~~~~aGAd 140 (281)
....+..+.++++|++++|++ +++.++.+|+.++.|+ +.|+|+.++.++++.+.++|+|
T Consensus 23 ~~~~~~a~~~~~~Ga~~i~~~------------~~~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad 90 (223)
T 1y0e_A 23 FIMSKMALAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCE 90 (223)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCS
T ss_pred ccHHHHHHHHHHCCCeeeccC------------CHHHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhCCCC
Confidence 355677778889999999985 5688999999888887 5689998888889999999999
Q ss_pred EEEEccccccc--ccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccc----hhHHHH
Q 023494 141 IVSVHCEQSST--IHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFI----ESQVKK 212 (281)
Q Consensus 141 ~Itvh~Ea~~~--~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~----~~~l~k 212 (281)
.|++|.++... .++.++++.+|+. |+.+++ ++.|+.+..+.....+|+| +..++|++++.+. ...++.
T Consensus 91 ~v~l~~~~~~~p~~~~~~~i~~~~~~~~~~~v~~--~~~t~~e~~~~~~~G~d~i--~~~~~g~t~~~~~~~~~~~~~~~ 166 (223)
T 1y0e_A 91 VIALDATLQQRPKETLDELVSYIRTHAPNVEIMA--DIATVEEAKNAARLGFDYI--GTTLHGYTSYTQGQLLYQNDFQF 166 (223)
T ss_dssp EEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEE--ECSSHHHHHHHHHTTCSEE--ECTTTTSSTTSTTCCTTHHHHHH
T ss_pred EEEEeeecccCcccCHHHHHHHHHHhCCCceEEe--cCCCHHHHHHHHHcCCCEE--EeCCCcCcCCCCCCCCCcccHHH
Confidence 99999986311 3678999999998 888876 4455544333223348886 4567788776653 233455
Q ss_pred HHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++++++.. ++++.++||| +++++.+++++|||.+++||+||+ |....+++++.++
T Consensus 167 ~~~~~~~~-----~ipvia~GGI~~~~~~~~~~~~Gad~v~vG~al~~---p~~~~~~~~~~~~ 222 (223)
T 1y0e_A 167 LKDVLQSV-----DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAITR---PKEITKRFVQVME 222 (223)
T ss_dssp HHHHHHHC-----CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHTTC
T ss_pred HHHHHhhC-----CCCEEEecCCCCHHHHHHHHHcCCCEEEEChHHcC---cHHHHHHHHHHhc
Confidence 55555432 5899999999 899999999999999999999997 7788888877653
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.80 E-value=7.7e-19 Score=160.04 Aligned_cols=208 Identities=17% Similarity=0.224 Sum_probs=156.6
Q ss_pred CCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----ccCC------HHHHHHcCcC-CC
Q 023494 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----ITIG------PLVVDALRPV-TD 115 (281)
Q Consensus 56 ~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----~~~G------~~~I~~ir~~-t~ 115 (281)
++..+.|.+.++|+. ...+.++.|.++|+|+|++. ++||..+.. +.-| ++.++++|+. ++
T Consensus 18 ~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~ 97 (271)
T 3nav_A 18 QQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPE 97 (271)
T ss_dssp TBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCC
Confidence 345799999999973 55567788889999999999 789965553 1122 5788888875 77
Q ss_pred CCeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC
Q 023494 116 LPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188 (281)
Q Consensus 116 ~~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v 188 (281)
.|+.+ |+ .|| ++|++.+.++|+|+++++.. +.++..++.+.++++|++....+.|.|+.++++.+....
T Consensus 98 ~Pivl--m~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDl--p~ee~~~~~~~~~~~gl~~I~lvap~t~~eri~~i~~~~ 173 (271)
T 3nav_A 98 TPIGL--LMYANLVYARGIDDFYQRCQKAGVDSVLIADV--PTNESQPFVAAAEKFGIQPIFIAPPTASDETLRAVAQLG 173 (271)
T ss_dssp SCEEE--EECHHHHHHTCHHHHHHHHHHHTCCEEEETTS--CGGGCHHHHHHHHHTTCEEEEEECTTCCHHHHHHHHHHC
T ss_pred CCEEE--EecCcHHHHHhHHHHHHHHHHCCCCEEEECCC--CHHHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHHC
Confidence 88875 66 466 46788999999999999866 457788999999999999988999999999999987764
Q ss_pred -CEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC----
Q 023494 189 -DLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA---- 260 (281)
Q Consensus 189 -D~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a---- 260 (281)
++|.+.+ ..|.+|.. +.+...+.++++|+.. +.++.|.|||+ ++++.+.+++|||.+|+||+|.+.
T Consensus 174 ~gfiY~vs-~~GvTG~~~~~~~~~~~~v~~vr~~~-----~~Pv~vGfGIst~e~~~~~~~~gADgvIVGSAiv~~i~~~ 247 (271)
T 3nav_A 174 KGYTYLLS-RAGVTGAETKANMPVHALLERLQQFD-----APPALLGFGISEPAQVKQAIEAGAAGAISGSAVVKIIETH 247 (271)
T ss_dssp CSCEEECC-CC--------CCHHHHHHHHHHHHTT-----CCCEEECSSCCSHHHHHHHHHTTCSEEEESHHHHHHHHHT
T ss_pred CCeEEEEe-ccCCCCcccCCchhHHHHHHHHHHhc-----CCCEEEECCCCCHHHHHHHHHcCCCEEEECHHHHHHHHhh
Confidence 6765444 45766643 4455566777777653 36899999995 999998899999999999999852
Q ss_pred -CCHHHHHHHHHHh
Q 023494 261 -KDYAEAIKGIKTS 273 (281)
Q Consensus 261 -~dp~~~~~~l~~~ 273 (281)
+++.+..+.+++.
T Consensus 248 ~~~~~~~~~~~~~~ 261 (271)
T 3nav_A 248 LDNPAKQLTELANF 261 (271)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHH
Confidence 2455555555443
|
| >2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=4.7e-19 Score=154.46 Aligned_cols=187 Identities=18% Similarity=0.186 Sum_probs=139.9
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe-----cChhhHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI-----VEPEQRV 131 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-----~dp~~~i 131 (281)
...|+|||++.|+.++.+.++.+.++|+++||++.+|... .+.++.+++..+ +|+++ .++. ++
T Consensus 6 ~~~i~~~i~~~d~~~~~~~~~~~~~~G~~~i~l~~~~~~~-------~~~i~~i~~~~~----~~l~vg~g~~~~~~-~i 73 (212)
T 2v82_A 6 KLPLIAILRGITPDEALAHVGAVIDAGFDAVEIPLNSPQW-------EQSIPAIVDAYG----DKALIGAGTVLKPE-QV 73 (212)
T ss_dssp SSCEEEECTTCCHHHHHHHHHHHHHHTCCEEEEETTSTTH-------HHHHHHHHHHHT----TTSEEEEECCCSHH-HH
T ss_pred CCCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEeCCChhH-------HHHHHHHHHhCC----CCeEEEeccccCHH-HH
Confidence 4569999999999999999999999999999999887421 245565554323 34444 4544 78
Q ss_pred HHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHH
Q 023494 132 PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 132 ~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
+.+.++|||+|++... ..++++.++++|.++.+. ..|+.+..+.+...+|+|.+ +|+ + +..++
T Consensus 74 ~~a~~~Gad~V~~~~~------~~~~~~~~~~~g~~~~~g--~~t~~e~~~a~~~G~d~v~v---~~t---~---~~g~~ 136 (212)
T 2v82_A 74 DALARMGCQLIVTPNI------HSEVIRRAVGYGMTVCPG--CATATEAFTALEAGAQALKI---FPS---S---AFGPQ 136 (212)
T ss_dssp HHHHHTTCCEEECSSC------CHHHHHHHHHTTCEEECE--ECSHHHHHHHHHTTCSEEEE---TTH---H---HHCHH
T ss_pred HHHHHcCCCEEEeCCC------CHHHHHHHHHcCCCEEee--cCCHHHHHHHHHCCCCEEEE---ecC---C---CCCHH
Confidence 8999999999974432 235678888999875444 35555554444456999985 553 1 34567
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC----CCHHHHHHHHHHhcC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA----KDYAEAIKGIKTSKR 275 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a----~dp~~~~~~l~~~~~ 275 (281)
+++++++..+ .+++|.++|||+++++.++.++|||.+++||+||++ +||++.++++++.++
T Consensus 137 ~~~~l~~~~~---~~ipvia~GGI~~~~i~~~~~~Ga~gv~vGsai~~~~~~~~d~~~~~~~l~~~~~ 201 (212)
T 2v82_A 137 YIKALKAVLP---SDIAVFAVGGVTPENLAQWIDAGCAGAGLGSDLYRAGQSVERTAQQAAAFVKAYR 201 (212)
T ss_dssp HHHHHHTTSC---TTCEEEEESSCCTTTHHHHHHHTCSEEEECTTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcc---CCCeEEEeCCCCHHHHHHHHHcCCCEEEEChHHhCCCCCHHHHHHHHHHHHHHHH
Confidence 7777776543 147999999999999999999999999999999997 689999988877543
|
| >3nl6_A Thiamine biosynthetic bifunctional enzyme; thiamin biosynthesis, eukaryoyes, transferase; HET: TPS ACP; 2.61A {Candida glabrata} PDB: 3nl2_A* 3nl5_A* 3nl3_A* 3nm3_A* 3nm1_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=4.8e-19 Score=175.25 Aligned_cols=205 Identities=15% Similarity=0.059 Sum_probs=157.7
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
+.|+|+.++.+..++.+.++.+.++|++++|++.+|..+... .+..+++++.+. ..+++|+++| +++.+.+.
T Consensus 13 YlITd~~~~~~~~~l~~~ve~al~~Gv~~vQlR~K~~~~~~~----~~~a~~l~~l~~-~~~v~liIND---~~dlA~~~ 84 (540)
T 3nl6_A 13 YLVTDSGMIPEGKTLYGQVEAGLQNGVTLVQIREKDADTKFF----IEEALQIKELCH-AHNVPLIIND---RIDVAMAI 84 (540)
T ss_dssp EEEC-CTTCCTTCCHHHHHHHHHHTTCSEEEECCSSSCTTHH----HHHHHHHHHHHH-HTTCCEEECS---CSHHHHHT
T ss_pred EEEECchhccCcchHHHHHHHHHHCCCCEEEEecCCCCHHHH----HHHHHHHHHHHH-hcCCEEEEeC---cHHHHHHc
Confidence 568898887777889999999999999999999999754332 345666665542 3578899998 88888999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc---CCEEEEEeecCCCCCCcc--chhHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV---VDLVLIMSVNPGFGGQSF--IESQVKK 212 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~---vD~IlvmsV~pG~~GQ~f--~~~~l~k 212 (281)
|||+||+..++. ....++.+...+..+|++.+ |+-|..+..... +|||.+++++|+.+.+.. .+..++.
T Consensus 85 gAdGVHLgq~dl----~~~~ar~~lg~~~iiG~S~h--t~eea~~A~~~G~~~aDYv~~Gpvf~T~tK~~~~~~~~G~~~ 158 (540)
T 3nl6_A 85 GADGIHVGQDDM----PIPMIRKLVGPDMVIGWSVG--FPEEVDELSKMGPDMVDYIGVGTLFPTLTKKNPKKAPMGTAG 158 (540)
T ss_dssp TCSEEEECTTSS----CHHHHHHHHCTTSEEEEEEC--SHHHHHHHHHTCC--CCEEEESCCSCCCCCC----CCCHHHH
T ss_pred CCCEEEEChhhc----CHHHHHHHhCCCCEEEEECC--CHHHHHHHHHcCCCCCCEEEEcCCCCCCCCCCcCCCCCCHHH
Confidence 999999998853 23445555567889999996 433333333445 899999999998776655 3455777
Q ss_pred HHHHHHHhhhc-CCCCeEEEecCCChhcHHHHHH--------cCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 213 ISDLRRMCLEK-GVNPWIEVDGGVGPKNAYKVIE--------AGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 213 I~~lr~l~~~~-~~~~~I~VDGGI~~e~i~~~~~--------aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
++++++.+.+. ..++++.+.|||+++|+.++++ +|+|.++++|+||+++||++++++|++.++.
T Consensus 159 l~~i~~~~~~~~~~~iPvvAIGGI~~~ni~~v~~~~~~~g~~~GadgvAVvsaI~~a~dp~~a~~~l~~~~~~ 231 (540)
T 3nl6_A 159 AIRVLDALERNNAHWCRTVGIGGLHPDNIERVLYQCVSSNGKRSLDGICVVSDIIASLDAAKSTKILRGLIDK 231 (540)
T ss_dssp HHHHHHHHHHTTCTTCEEEEESSCCTTTHHHHHHHCBCTTSSCBCSCEEESHHHHTCTTHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhhccCCCCEEEEcCCCHHHHHHHHHhhcccccccCceEEEEeHHHhcCCCHHHHHHHHHHHHHh
Confidence 77777765331 2468999999999999999998 8999999999999999999999999987654
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.78 E-value=3.3e-18 Score=150.93 Aligned_cols=191 Identities=18% Similarity=0.157 Sum_probs=146.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+.++.+++.|+|++|+..+++.+ ++.....+.++++++.++.|+.++.++.+|... +.+.++|||.|.++.+.
T Consensus 33 ~~~~~~a~~~~~~G~d~i~v~~~~~~~-~~~~~~~~~i~~i~~~~~ipvi~~g~i~~~~~~-~~~~~~Gad~V~i~~~~- 109 (253)
T 1h5y_A 33 GDPVEMAVRYEEEGADEIAILDITAAP-EGRATFIDSVKRVAEAVSIPVLVGGGVRSLEDA-TTLFRAGADKVSVNTAA- 109 (253)
T ss_dssp ECHHHHHHHHHHTTCSCEEEEECCCCT-TTHHHHHHHHHHHHHHCSSCEEEESSCCSHHHH-HHHHHHTCSEEEESHHH-
T ss_pred ccHHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHHHHHHHHHhcCCCEEEECCCCCHHHH-HHHHHcCCCEEEEChHH-
Confidence 367788899999999999999888765 344556788899988778999999999998855 77888999999999874
Q ss_pred ccccHHHHHHHHHHcCC---cEEEEEC--C---------------CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchh
Q 023494 150 STIHLHRTLNQIKDLGA---KAGVVLN--P---------------ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~---k~Glai~--p---------------~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
..++..+.+.++++|. .+++..+ | .++.+.++.+.+. +|+|+++++.++..+|.+.
T Consensus 110 -~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~~-- 186 (253)
T 1h5y_A 110 -VRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYD-- 186 (253)
T ss_dssp -HHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCC--
T ss_pred -hhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecCCCCHHHHHHHHHhCCCCEEEEecccCCCCcCcCC--
Confidence 3345555666677774 4565553 1 2456767766664 9999999999877666664
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC-CHHHHHHHHHH
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~-dp~~~~~~l~~ 272 (281)
++.++++++.. ++++.++|||+ .+++.++.++|||.+++||++++.+ ++++..+.+++
T Consensus 187 -~~~i~~l~~~~-----~~pvia~GGi~~~~~~~~~~~~Ga~~v~vgsal~~~~~~~~~~~~~l~~ 246 (253)
T 1h5y_A 187 -VELIRRVADSV-----RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLKE 246 (253)
T ss_dssp -HHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred -HHHHHHHHHhc-----CCCEEEeCCCCCHHHHHHHHHcCCcHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 44555555543 47899999999 5999999999999999999999875 56665555544
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.2e-18 Score=152.52 Aligned_cols=190 Identities=18% Similarity=0.131 Sum_probs=146.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+..+.++++|+|++|++-+|+.|. +.....+.++++++.++.|+.++.++.+|.+ ++.+.++|||.|+++.+.
T Consensus 31 d~~~~a~~~~~~Gad~i~v~d~~~~~~-~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~-~~~~~~~Gad~V~lg~~~-- 106 (253)
T 1thf_D 31 DPVELGKFYSEIGIDELVFLDITASVE-KRKTMLELVEKVAEQIDIPFTVGGGIHDFET-ASELILRGADKVSINTAA-- 106 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSS-HHHHHHHHHHHHHTTCCSCEEEESSCCSHHH-HHHHHHTTCSEEEESHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEECCchhhc-CCcccHHHHHHHHHhCCCCEEEeCCCCCHHH-HHHHHHcCCCEEEEChHH--
Confidence 455666788899999999999998764 4556778889998888899999999999874 788889999999999885
Q ss_pred cccHHHHHHHHHHcCC-cEEEEECCC-------------------CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhH
Q 023494 151 TIHLHRTLNQIKDLGA-KAGVVLNPA-------------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~-k~Glai~p~-------------------t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
..++..+.+.++..|. ++.+.+++. ++.+.++.+.+. ++.|+++++.++...+.+..+.
T Consensus 107 l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~~g~~~g~~~~~ 186 (253)
T 1thf_D 107 VENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEM 186 (253)
T ss_dssp HHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHH
T ss_pred HhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEEeccCCCCCCCCCHHH
Confidence 3445556666667774 344444442 456666766665 8999999988876666665444
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC-CHHHHHHHHHH
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~-dp~~~~~~l~~ 272 (281)
+ +++++. .++++.++|||+ ++++.++.++|+|.+++||++++.+ ++++..+.+++
T Consensus 187 ~---~~l~~~-----~~ipvia~GGI~~~~d~~~~~~~Gadgv~vGsal~~~~~~~~~~~~~l~~ 243 (253)
T 1thf_D 187 I---RFVRPL-----TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp H---HHHGGG-----CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHHH
T ss_pred H---HHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4 444432 257899999999 6999999999999999999999887 89888888765
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=155.12 Aligned_cols=207 Identities=19% Similarity=0.201 Sum_probs=149.4
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEEe------eeCccccc-----ccC------CHHHHHHcCcCC-CC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFVPN-----ITI------GPLVVDALRPVT-DL 116 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiDI------mDG~fvpn-----~~~------G~~~I~~ir~~t-~~ 116 (281)
+..+.|-++++|+. ...+.++.+.++|+|+|++++ +||.++.. +.- ..+.++++|+.. +.
T Consensus 16 ~~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~ 95 (262)
T 2ekc_A 16 EKALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDI 95 (262)
T ss_dssp BCEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTS
T ss_pred CceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCC
Confidence 44689999999985 344556778899999999985 56644432 112 236688888765 77
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-C
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-V 188 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-v 188 (281)
|+.+ |. .|| .++++.+.++|+|+++++.. +.++..++++.++++|+++...+.|.++.++++.+... .
T Consensus 96 Pi~~--m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl--~~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl~~ia~~a~ 171 (262)
T 2ekc_A 96 PFLL--MTYYNPIFRIGLEKFCRLSREKGIDGFIVPDL--PPEEAEELKAVMKKYVLSFVPLGAPTSTRKRIKLICEAAD 171 (262)
T ss_dssp CEEE--ECCHHHHHHHCHHHHHHHHHHTTCCEEECTTC--CHHHHHHHHHHHHHTTCEECCEECTTCCHHHHHHHHHHCS
T ss_pred CEEE--EecCcHHHHhhHHHHHHHHHHcCCCEEEECCC--CHHHHHHHHHHHHHcCCcEEEEeCCCCCHHHHHHHHHhCC
Confidence 8765 63 466 46788899999999999966 35778899999999999988888999999888887765 4
Q ss_pred CEEEEEeecCCCCCCc--cc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC--CC
Q 023494 189 DLVLIMSVNPGFGGQS--FI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA--KD 262 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~--f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a--~d 262 (281)
.++.+.++ .|..|.. +. +...+.++++|+.. +.++.|+|||+ ++++.. +.+|||.+|+||+|.+. ++
T Consensus 172 gfiy~vs~-~g~TG~~~~~~~~~~~~~v~~vr~~~-----~~pv~vG~GI~t~e~~~~-~~~gADgvIVGSai~~~~~~~ 244 (262)
T 2ekc_A 172 EMTYFVSV-TGTTGAREKLPYERIKKKVEEYRELC-----DKPVVVGFGVSKKEHARE-IGSFADGVVVGSALVKLAGQK 244 (262)
T ss_dssp SCEEEESS-CC---------CHHHHHHHHHHHHHC-----CSCEEEESSCCSHHHHHH-HHTTSSEEEECHHHHHHHHTT
T ss_pred CCEEEEec-CCccCCCCCcCcccHHHHHHHHHhhc-----CCCEEEeCCCCCHHHHHH-HHcCCCEEEECHHHHhhhhhh
Confidence 56655544 4555533 33 44567788888764 36899999998 999999 78899999999999975 44
Q ss_pred HHHHHHHHHHhc
Q 023494 263 YAEAIKGIKTSK 274 (281)
Q Consensus 263 p~~~~~~l~~~~ 274 (281)
+.+.++++-+.+
T Consensus 245 ~~~~~~~~~~~~ 256 (262)
T 2ekc_A 245 KIEDLGNLVKEL 256 (262)
T ss_dssp CHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 444555544433
|
| >3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.75 E-value=4e-18 Score=153.05 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=140.3
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc------ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR------FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP 132 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~------fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~ 132 (281)
.|++.-. +..++.+.++.+.+.|++++|+...+.. ..+. ..-.+..+++++.+ ....+.|+++| .++
T Consensus 34 lIt~~~~--~~~~~~~~~~~al~~Gv~~vqlR~K~~~~~~~~~~l~~-~~~~~~a~~l~~l~-~~~~~~liInd---~~~ 106 (243)
T 3o63_A 34 LCTDARR--ERGDLAQFAEAALAGGVDIIQLRDKGSPGELRFGPLQA-RDELAACEILADAA-HRYGALFAVND---RAD 106 (243)
T ss_dssp EEECCCT--TTCCHHHHHHHHHHTTCSEEEECCTTCHHHHHHCSCCH-HHHHHHHHHHHHHH-HHTTCEEEEES---CHH
T ss_pred EEECCCc--ccchHHHHHHHHHHCCCCEEEEccCCCCccccccCCCH-HHHHHHHHHHHHHH-HhhCCEEEEeC---HHH
Confidence 4555422 2346889999999999999999877621 0010 01112334455443 23467889998 555
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHH
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
.+.++|||+|++..+.. ....++.+...+..+|+..+ |+-|..+.....+|||.++.+.|+.+.+...+..++.
T Consensus 107 lA~~~gAdGVHLg~~dl----~~~~~r~~~~~~~~iG~S~h--t~~Ea~~A~~~GaDyI~vgpvf~T~tK~~~~~~gl~~ 180 (243)
T 3o63_A 107 IARAAGADVLHLGQRDL----PVNVARQILAPDTLIGRSTH--DPDQVAAAAAGDADYFCVGPCWPTPTKPGRAAPGLGL 180 (243)
T ss_dssp HHHHHTCSEEEECTTSS----CHHHHHHHSCTTCEEEEEEC--SHHHHHHHHHSSCSEEEECCSSCCCC-----CCCHHH
T ss_pred HHHHhCCCEEEecCCcC----CHHHHHHhhCCCCEEEEeCC--CHHHHHHHhhCCCCEEEEcCccCCCCCCCcchhhHHH
Confidence 67889999999988753 22344455556788999873 4444333334569999999998887655444566788
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
++++++... .++++.+.|||+++|+.++.++|||.+++||+||+++||.+++++|++.++.
T Consensus 181 l~~~~~~~~---~~iPvvAiGGI~~~ni~~~~~aGa~gvav~sai~~a~dp~~a~~~l~~~~~~ 241 (243)
T 3o63_A 181 VRVAAELGG---DDKPWFAIGGINAQRLPAVLDAGARRIVVVRAITSADDPRAAAEQLRSALTA 241 (243)
T ss_dssp HHHHHTC------CCCEEEESSCCTTTHHHHHHTTCCCEEESHHHHTCSSHHHHHHHHHHHHHT
T ss_pred HHHHHHhcc---CCCCEEEecCCCHHHHHHHHHcCCCEEEEeHHHhCCCCHHHHHHHHHHHHHh
Confidence 887765421 2478999999999999999999999999999999999999999999987654
|
| >3ru6_A Orotidine 5'-phosphate decarboxylase; structural genomics, center for structural genomics of infec diseases (csgid), TIM-barrel; 1.80A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.6e-18 Score=157.54 Aligned_cols=202 Identities=13% Similarity=0.208 Sum_probs=142.8
Q ss_pred eEEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHH
Q 023494 61 SPSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPD 133 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~ 133 (281)
++-++|+|+.+++++++.+++.+ ++++.+ | +|++ ++|+..++.||+..+.++.+|++..|... +++.
T Consensus 25 ~~LiVALD~~~~~eal~l~~~l~~~v~~vKV----G--~~lf~~~G~~~V~~Lk~~~g~~IflDlKl~DIpnTv~~av~~ 98 (303)
T 3ru6_A 25 MKLCVALDLSTKEECLQLAKELKNLDIWLKV----G--LRAYLRDGFKFIEELKKVDDFKIFLDLKFHDIPNTMADACEE 98 (303)
T ss_dssp CEEEEECCCSSHHHHHHHHHHTTTSSCEEEE----C--HHHHHHHTHHHHHHHHHHCCCEEEEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEeCCCCHHHHHHHHHHhCCCccEEEe----C--HHHHHHhCHHHHHHHHHhhCCCEEEEeeeccCchhHHHHHHH
Confidence 45689999999999999988865 344444 4 5774 89999999999865788888999988764 4556
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCC---cEEEEECCCCCHHHHHHhhcc--CCEEEE---EeecCCCCCCcc
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA---KAGVVLNPATSLSAIECVLDV--VDLVLI---MSVNPGFGGQSF 205 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~---k~Glai~p~t~ie~~~~~l~~--vD~Ilv---msV~pG~~GQ~f 205 (281)
+.++|+|++|+|+... .+.+..+++.+++.|. -+++.+-.+++-+.+.++... .+.|+- +....|..|--.
T Consensus 99 ~a~lGaD~vTVHa~~G-~~~m~aa~e~a~~~~~~~~llaVtvLTS~s~~~l~~l~~~~~~e~V~~lA~~a~~~G~dGvV~ 177 (303)
T 3ru6_A 99 VSKLGVDMINIHASAG-KIAIQEVMTRLSKFSKRPLVLAVSALTSFDEENFFSIYRQKIEEAVINFSKISYENGLDGMVC 177 (303)
T ss_dssp HHTTTCSEEEEEGGGC-HHHHHHHHHHHTTSSSCCEEEEECSCTTCCHHHHHHHHSSCHHHHHHHHHHHHHHTTCSEEEC
T ss_pred HHhcCCCEEEEeccCC-HHHHHHHHHHHHhcCCCceEEEEEEecCCCHHHHHHHHcCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 7789999999999874 5667788888877764 345555555555444433111 011111 122345444111
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.+.- ++.+|+.++. ++ +.|.+||+++ |+.+++++|||++|+||+||+++||.++++++++.+
T Consensus 178 s~~E---~~~IR~~~~~---~f-l~VTPGIr~qG~~~~DQ~Rv~t~~~a~~aGAd~iVvGr~I~~a~dp~~a~~~i~~~i 250 (303)
T 3ru6_A 178 SVFE---SKKIKEHTSS---NF-LTLTPGIRPFGETNDDQKRVANLAMARENLSDYIVVGRPIYKNENPRAVCEKILNKI 250 (303)
T ss_dssp CTTT---HHHHHHHSCT---TS-EEEECCCCTTC--------CCSHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHHHHH
T ss_pred CHHH---HHHHHHhCCC---cc-EEECCCcCcccCCcccccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 1221 3455655532 34 6699999987 899999999999999999999999999999999877
Q ss_pred Cc
Q 023494 275 RP 276 (281)
Q Consensus 275 ~~ 276 (281)
++
T Consensus 251 ~~ 252 (303)
T 3ru6_A 251 HR 252 (303)
T ss_dssp C-
T ss_pred Hh
Confidence 65
|
| >3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=143.12 Aligned_cols=206 Identities=12% Similarity=0.135 Sum_probs=152.3
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcCCCCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPVTDLP 117 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~t~~~ 117 (281)
+..+.|.+.+.|+. ...+.++.|.++|+|.|++. ++||..+.. +.--.++++++|+. .|
T Consensus 13 ~~ali~yitaG~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~--~P 90 (252)
T 3tha_A 13 ENANVAYTVLGYPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTK--KA 90 (252)
T ss_dssp SSEEEEEEETTSSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCS--SE
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcC--CC
Confidence 45799999999983 44455677789999999998 678854442 11234556667653 56
Q ss_pred eeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC-C
Q 023494 118 LDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV-D 189 (281)
Q Consensus 118 idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v-D 189 (281)
+. ||+ .|| ++|++.+.++|+|++.+..- +.++..++.+.++++|++....+.|+|+.++++.+.... +
T Consensus 91 iv--lm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDL--P~eE~~~~~~~~~~~Gl~~I~lvaP~t~~eRi~~ia~~a~g 166 (252)
T 3tha_A 91 LV--FMVYYNLIFSYGLEKFVKKAKSLGICALIVPEL--SFEESDDLIKECERYNIALITLVSVTTPKERVKKLVKHAKG 166 (252)
T ss_dssp EE--EECCHHHHHHHCHHHHHHHHHHTTEEEEECTTC--CGGGCHHHHHHHHHTTCEECEEEETTSCHHHHHHHHTTCCS
T ss_pred EE--EEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCC--CHHHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHhCCC
Confidence 55 477 476 35788889999999999976 456788999999999999988899999999999988875 5
Q ss_pred EEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccC---CCCH
Q 023494 190 LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFG---AKDY 263 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~---a~dp 263 (281)
+|.+.+ ..|.+|.. +.+...+.++++|+. .+.++.|.||| +++++..+.+ +||.+|+||+|.+ ..++
T Consensus 167 FiY~Vs-~~GvTG~~~~~~~~~~~~v~~vr~~-----~~~Pv~vGfGIst~e~a~~~~~-~ADGVIVGSAiVk~i~~~~~ 239 (252)
T 3tha_A 167 FIYLLA-SIGITGTKSVEEAILQDKVKEIRSF-----TNLPIFVGFGIQNNQDVKRMRK-VADGVIVGTSIVKCFKQGNL 239 (252)
T ss_dssp CEEEEC-CSCSSSCSHHHHHHHHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHTT-TSSEEEECHHHHHHTTSSCH
T ss_pred eEEEEe-cCCCCCcccCCCHHHHHHHHHHHHh-----cCCcEEEEcCcCCHHHHHHHHh-cCCEEEECHHHHHHHHhcCH
Confidence 665543 45777754 223334555665554 24789999999 5999998765 6999999999874 4577
Q ss_pred HHHHHHHHHhcC
Q 023494 264 AEAIKGIKTSKR 275 (281)
Q Consensus 264 ~~~~~~l~~~~~ 275 (281)
++..+.+++..+
T Consensus 240 ~~~~~~~~~~~~ 251 (252)
T 3tha_A 240 DIIMKDIEEIFK 251 (252)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHHHHhh
Confidence 777777776543
|
| >1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=2.5e-15 Score=136.79 Aligned_cols=206 Identities=21% Similarity=0.253 Sum_probs=145.4
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEEe------eeCccccc-----ccCC------HHHHHHcCcCCCCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVDV------MDGRFVPN-----ITIG------PLVVDALRPVTDLP 117 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiDI------mDG~fvpn-----~~~G------~~~I~~ir~~t~~~ 117 (281)
+..+.|-|+++|+. ...+.++.+.++ +|+|++++ +||.++.. +..| .+.++++|+.++.|
T Consensus 15 ~~~li~~i~~GdP~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~P 93 (271)
T 1ujp_A 15 RAALIPYLTAGFPSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKP 93 (271)
T ss_dssp BCEEEEEEETTSSCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSC
T ss_pred CceEEEEecCCCCChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCC
Confidence 45789999999984 334566677788 99999974 56633321 1112 35688888877788
Q ss_pred eeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CC
Q 023494 118 LDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VD 189 (281)
Q Consensus 118 idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD 189 (281)
+.+ |. .|| .++++.+.++|+|++++..- +.++..++++.++++|+.....+.|.++.++++.+... ..
T Consensus 94 ii~--m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl--~~ee~~~~~~~~~~~gl~~i~liap~s~~eri~~ia~~~~g 169 (271)
T 1ujp_A 94 LFL--MTYLNPVLAWGPERFFGLFKQAGATGVILPDL--PPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHATG 169 (271)
T ss_dssp EEE--ECCHHHHHHHCHHHHHHHHHHHTCCEEECTTC--CGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCCS
T ss_pred EEE--EecCcHHHHhhHHHHHHHHHHcCCCEEEecCC--CHHHHHHHHHHHHHcCCceEEEeCCCCCHHHHHHHHHhCCC
Confidence 877 55 355 45788899999999999865 35778899999999999888889999999988888765 45
Q ss_pred EEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC----C
Q 023494 190 LVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK----D 262 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~----d 262 (281)
++++.++ .|.+|.. +.+...+.++++|+.. +.++.|.|||+ ++++.++ +|||++||||+|.+.. .
T Consensus 170 fiy~vs~-~G~TG~~~~~~~~~~~~v~~vr~~~-----~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGSAi~~~~~~~~~ 241 (271)
T 1ujp_A 170 FVYAVSV-TGVTGMRERLPEEVKDLVRRIKART-----ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGRS 241 (271)
T ss_dssp CEEEECC-------------CCHHHHHHHHTTC-----CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTCC
T ss_pred CEEEEec-CcccCCCCCCCccHHHHHHHHHhhc-----CCCEEEEcCCCCHHHHHHh--cCCCEEEEChHHhcccchHHH
Confidence 5554433 5666543 3333456667766542 47899999998 9999996 9999999999998642 4
Q ss_pred HHHHHHHHHHhcC
Q 023494 263 YAEAIKGIKTSKR 275 (281)
Q Consensus 263 p~~~~~~l~~~~~ 275 (281)
..+.++.+++.++
T Consensus 242 ~~~fv~~l~~~~~ 254 (271)
T 1ujp_A 242 LAPLLQEIRQGLQ 254 (271)
T ss_dssp HHHHHHHHHHHHB
T ss_pred HHHHHHHHHHHHH
Confidence 5667777776554
|
| >3ldv_A Orotidine 5'-phosphate decarboxylase; structural genomics, infectious diseases; 1.77A {Vibrio cholerae o1 biovar el tor} PDB: 3uwq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=5.3e-16 Score=140.10 Aligned_cols=198 Identities=19% Similarity=0.225 Sum_probs=136.7
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCccccc-ccCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDF 134 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn-~~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~~ 134 (281)
+-++|+|+.+++++++.+++.+ ++++.+ | .+. ..+|++.++.||+. ++++.+|+|..|... +++.+
T Consensus 29 ~LivALD~~~~~~al~l~~~l~~~v~~~Kv----G--~~l~~~~G~~~v~~Lk~~-g~~VflDlK~~DIpnTv~~a~~~~ 101 (255)
T 3ldv_A 29 KVIVALDYDNLADALAFVDKIDPSTCRLKV----G--KEMFTLFGPDFVRELHKR-GFSVFLDLKFHDIPNTCSKAVKAA 101 (255)
T ss_dssp CEEEEECCSSHHHHHHHHTTSCGGGCEEEE----E--HHHHHHHHHHHHHHHHHT-TCCEEEEEEECSCHHHHHHHHHHH
T ss_pred CeEEEcCCCCHHHHHHHHHHhCCcCcEEEe----C--HHHHHhhCHHHHHHHHhc-CCCEEEEEecccchhHHHHHHHHH
Confidence 4589999999999999988764 345444 2 233 37899999999986 788999999988864 45668
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcC----CcEEEEECCCCCHHHHHHhh-cc--CCEEEE---EeecCCCCCCc
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLG----AKAGVVLNPATSLSAIECVL-DV--VDLVLI---MSVNPGFGGQS 204 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G----~k~Glai~p~t~ie~~~~~l-~~--vD~Ilv---msV~pG~~GQ~ 204 (281)
.++|+|++|+|+... .+.++.+++.+++.| +-+|+.+-.+++-+.+.+.- .. -+.|+- +..+.|..|--
T Consensus 102 ~~~gaD~vTVh~~~G-~~~~~~a~~~~~~~g~~~~~li~VtvLTS~s~~~l~~~g~~~~~~~~V~~~A~~a~~aG~~GvV 180 (255)
T 3ldv_A 102 AELGVWMVNVHASGG-ERMMAASREILEPYGKERPLLIGVTVLTSMESADLQGIGILSAPQDHVLRLATLTKNAGLDGVV 180 (255)
T ss_dssp HHTTCSEEEEEGGGC-HHHHHHHHHHHGGGGGGSCEEEEECSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHTTCSEEE
T ss_pred HhcCCCEEEEeccCC-HHHHHHHHHHHhhcCCCCceEEEEEEEecCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 899999999998863 556777777776654 23556555555544443210 00 001111 11233444432
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
.-+. .++.+|+.++. ++ +.|.+||+++ |..+++++|||.+|+||+||+++||.++++++++.
T Consensus 181 ~sa~---e~~~iR~~~g~---~f-l~VtPGIr~qg~~~~dQ~Rv~t~~~a~~aGad~iVvGr~I~~a~dp~~a~~~i~~e 253 (255)
T 3ldv_A 181 CSAQ---EASLLKQHLGR---EF-KLVTPGIRPAGSEQGDQRRIMTPAQAIASGSDYLVIGRPITQAAHPEVVLEEINSS 253 (255)
T ss_dssp CCHH---HHHHHHHHHCT---TS-EEEEECCCCTTSTTSSCSSSCCHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHHH
T ss_pred ECHH---HHHHHHHhcCC---Cc-EEEeCCcccCcCCccceeccCCHHHHHHcCCCEEEECHHHhCCCCHHHHHHHHHHh
Confidence 3333 45556665542 45 4489999876 47789999999999999999999999999999886
Q ss_pred c
Q 023494 274 K 274 (281)
Q Consensus 274 ~ 274 (281)
+
T Consensus 254 i 254 (255)
T 3ldv_A 254 L 254 (255)
T ss_dssp C
T ss_pred h
Confidence 4
|
| >3tfx_A Orotidine 5'-phosphate decarboxylase; PSI-biology, nysgrc, 000529, structural genomics, NEW YORK S genomics research consortium; 2.19A {Lactobacillus acidophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=137.27 Aligned_cols=199 Identities=18% Similarity=0.200 Sum_probs=133.3
Q ss_pred EEEeccCccCHHHHHHHHHHcC--C-CeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--C-DWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPD 133 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~-d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~ 133 (281)
+-++|+|+.++++.++.+++.+ + +++.+ | .+.+ .+|++.++.||+. ++++.+|+|..|... +++.
T Consensus 6 ~LivALD~~~~~~al~l~~~l~~~v~~~~Kv----G--~~l~~~~G~~~v~~Lk~~-g~~VflDlK~~DIpnTv~~a~~~ 78 (259)
T 3tfx_A 6 PVIVALDLDNEEQLNKILSKLGDPHDVFVKV----G--MELFYNAGIDVIKKLTQQ-GYKIFLDLKMHDIPNTVYNGAKA 78 (259)
T ss_dssp CEEEECCCSCHHHHHHHHHTTCCGGGCEEEE----C--HHHHHHHCHHHHHHHHHT-TCEEEEEEEECSCHHHHHHHHHH
T ss_pred CeEEEeCCCCHHHHHHHHHHhCcccceEEEe----C--HHHHHhcCHHHHHHHHHC-CCcEEEEecccccchHHHHHHHH
Confidence 4578999999999999988764 3 44444 4 2433 7999999999886 899999999999874 4567
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHc---CC----cEEEEECCCCCHHHHH-Hh-hcc--CCEEE---EEeecCC
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GA----KAGVVLNPATSLSAIE-CV-LDV--VDLVL---IMSVNPG 199 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~----k~Glai~p~t~ie~~~-~~-l~~--vD~Il---vmsV~pG 199 (281)
+.++|+|++|+|+-.. .+.++.+++.+++. |. -++|..-.+..-+.++ ++ +.. .+.|+ -+..+.|
T Consensus 79 ~~~~gad~vTVh~~~G-~~~~~aa~~~~~~~~~~g~~~~~li~Vt~lTS~~~~~l~~~~g~~~~~~e~v~~~A~~a~~~G 157 (259)
T 3tfx_A 79 LAKLGITFTTVHALGG-SQMIKSAKDGLIAGTPAGHSVPKLLAVTELTSISDDVLRNEQNCRLPMAEQVLSLAKMAKHSG 157 (259)
T ss_dssp HHTTTCSEEEEEGGGC-HHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBSSCHHHHHHHHHHHHHHTT
T ss_pred HHhcCCCEEEEcCCCC-HHHHHHHHHHHHHhcccCCCCceEEEEEEeCCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhC
Confidence 7889999999998763 55677777777653 32 2233332233323331 11 000 00000 0011223
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHH
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~ 268 (281)
..|--..|.- ++.+|+.++. ++ +.|.+||+++ |+.+++++|||++|+||+||+++||.++++
T Consensus 158 ~dGvV~s~~e---~~~ir~~~~~---~f-~~vtPGIr~~g~~~gDQ~Rv~T~~~a~~aGad~iVvGr~I~~a~dp~~a~~ 230 (259)
T 3tfx_A 158 ADGVICSPLE---VKKLHENIGD---DF-LYVTPGIRPAGNAKDDQSRVATPKMAKEWGSSAIVVGRPITLASDPKAAYE 230 (259)
T ss_dssp CCEEECCGGG---HHHHHHHHCS---SS-EEEECCCCCC-----------CHHHHHHTTCSEEEECHHHHTSSSHHHHHH
T ss_pred CCEEEECHHH---HHHHHhhcCC---cc-EEEcCCcCCCCCCcCCccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHH
Confidence 3331112333 4445555432 34 5589999987 588999999999999999999999999999
Q ss_pred HHHHhcC
Q 023494 269 GIKTSKR 275 (281)
Q Consensus 269 ~l~~~~~ 275 (281)
++++.++
T Consensus 231 ~i~~~~~ 237 (259)
T 3tfx_A 231 AIKKEFN 237 (259)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 9998765
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.2e-14 Score=130.70 Aligned_cols=199 Identities=17% Similarity=0.167 Sum_probs=135.6
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||- +.-|+ +..+..+.++++|+++||+= -|-.|- .=.++.++.+|+.++.|+...=.+-||. .++.+.++
T Consensus 61 asPs~g~i~~~~-~p~~~A~~y~~~GA~~isvl-td~~~f---~Gs~~~l~~ir~~v~lPvl~kdfiid~~-qv~~A~~~ 134 (272)
T 3qja_A 61 ASPSAGALATIA-DPAKLAQAYQDGGARIVSVV-TEQRRF---QGSLDDLDAVRASVSIPVLRKDFVVQPY-QIHEARAH 134 (272)
T ss_dssp -------------CHHHHHHHHHHTTCSEEEEE-CCGGGH---HHHHHHHHHHHHHCSSCEEEESCCCSHH-HHHHHHHT
T ss_pred CCCCCCccCCCC-CHHHHHHHHHHcCCCEEEEe-cChhhc---CCCHHHHHHHHHhCCCCEEECccccCHH-HHHHHHHc
Confidence 47774 44443 67777888999999999972 222111 1136788888887788887532333432 27788899
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||.|++.....+.+++.++++.+++.|+.+.+.++. .++++..+. .+|+|.+-.. ....|.+ .++.++++
T Consensus 135 GAD~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t---~ee~~~A~~~Gad~IGv~~r----~l~~~~~-dl~~~~~l 206 (272)
T 3qja_A 135 GADMLLLIVAALEQSVLVSMLDRTESLGMTALVEVHT---EQEADRALKAGAKVIGVNAR----DLMTLDV-DRDCFARI 206 (272)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESS---HHHHHHHHHHTCSEEEEESB----CTTTCCB-CTTHHHHH
T ss_pred CCCEEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCC---HHHHHHHHHCCCCEEEECCC----ccccccc-CHHHHHHH
Confidence 9999999766544456888899999999999887753 334443332 5899866422 2223322 23445555
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++.++. +.++.+.|||+ ++++..+.++|+|.+++||+|++++||.+.+++|.+..+
T Consensus 207 ~~~v~~---~~pvVaegGI~t~edv~~l~~~GadgvlVGsal~~a~dp~~~~~~l~~~~~ 263 (272)
T 3qja_A 207 APGLPS---SVIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVADLVTAGT 263 (272)
T ss_dssp GGGSCT---TSEEEEESCCCSHHHHHHHHHTTCSEEEECHHHHTCSCHHHHHHHHHTTTT
T ss_pred HHhCcc---cCEEEEECCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHhhhc
Confidence 544321 47888999999 999999999999999999999999999999999998654
|
| >3tr2_A Orotidine 5'-phosphate decarboxylase; purines, pyrimidines, nucleosides, nucleotides, lyase; 2.00A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.58 E-value=4.8e-14 Score=126.21 Aligned_cols=201 Identities=16% Similarity=0.238 Sum_probs=132.4
Q ss_pred eEEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCccccc-ccCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHH
Q 023494 61 SPSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPN-ITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPD 133 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn-~~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~ 133 (281)
++-++++|+.++++.++.+++.+ ++++.+ | .+. ..+|++.++.||+. ++++.+|++..|... +++.
T Consensus 9 ~~LivALD~~~~~~al~l~~~~~~~v~~~Kv----g--~~lf~~~G~~~v~~L~~~-g~~iflDlK~~DI~nTv~~~~~~ 81 (239)
T 3tr2_A 9 PKVIVAIDAGTVEQARAQINPLTPELCHLKI----G--SILFTRYGPAFVEELMQK-GYRIFLDLKFYDIPQTVAGACRA 81 (239)
T ss_dssp CCEEEECCCSSHHHHHHHHTTCCTTTCEEEE----E--HHHHHHHHHHHHHHHHHT-TCCEEEEEEECSCHHHHHHHHHH
T ss_pred CCeEEEeCCCCHHHHHHHHHHhCCcccEEEe----C--HHHHHhhCHHHHHHHHhc-CCCEEEEecccccchHHHHHHHH
Confidence 35589999999999999888765 456544 2 122 37899999999885 688888999887764 4567
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcC-----CcEEEEECCCCCHHHHHHh-hcc--CCEEEEE---eecCCCCC
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-----AKAGVVLNPATSLSAIECV-LDV--VDLVLIM---SVNPGFGG 202 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G-----~k~Glai~p~t~ie~~~~~-l~~--vD~Ilvm---sV~pG~~G 202 (281)
+.+.|+|++|+|+... .+.++.+++.+++.+ +-+++.+-.+++-+.+.++ +.. -+.|+-+ ..+.|..|
T Consensus 82 ~~~~gad~vTvh~~~G-~~~~~~a~~~~~~~~~~~~~~l~~Vt~LTS~~~~~l~~~g~~~~~~~~v~~~A~~a~~~g~~G 160 (239)
T 3tr2_A 82 VAELGVWMMNIHISGG-RTMMETVVNALQSITLKEKPLLIGVTILTSLDGSDLKTLGIQEKVPDIVCRMATLAKSAGLDG 160 (239)
T ss_dssp HHHTTCSEEEEEGGGC-HHHHHHHHHHHHTCCCSSCCEEEEECSCTTCCHHHHHHTTCCSCHHHHHHHHHHHHHHHTCCE
T ss_pred HHhCCCCEEEEeccCC-HHHHHHHHHHHHhcCcCCCceEEEEEEEeeCCHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCE
Confidence 8899999999999863 556777777777653 1345544444554444321 000 0111111 11223333
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
--.-+.- ...+|+.+ +.++ +.|.+||+++ |+.+++++|||++|+||+||+++||.+++++++
T Consensus 161 vV~s~~e---~~~ir~~~---~~~f-l~vtPGIr~~g~~~~dQ~rv~t~~~~~~aGad~lVvGr~I~~a~dp~~a~~~i~ 233 (239)
T 3tr2_A 161 VVCSAQE---AALLRKQF---DRNF-LLVTPGIRLETDEKGDQKRVMTPRAAIQAGSDYLVIGRPITQSTDPLKALEAID 233 (239)
T ss_dssp EECCHHH---HHHHHTTC---CTTS-EEEECCBC----------CCBCHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHH
T ss_pred EEECchh---HHHHHHhc---CCCc-EEECCCcCCCCCCcCcccccCCHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHH
Confidence 2222222 23344433 3345 4489999976 477899999999999999999999999999999
Q ss_pred HhcCc
Q 023494 272 TSKRP 276 (281)
Q Consensus 272 ~~~~~ 276 (281)
+.+..
T Consensus 234 ~~i~~ 238 (239)
T 3tr2_A 234 KDIKT 238 (239)
T ss_dssp HHC--
T ss_pred HHHhh
Confidence 87753
|
| >1vqt_A Orotidine 5'-phosphate decarboxylase; TM0332, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.00A {Thermotoga maritima} SCOP: c.1.2.3 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.4e-16 Score=140.27 Aligned_cols=182 Identities=18% Similarity=0.165 Sum_probs=112.7
Q ss_pred cCccCHHHHHHHHHHcC-CCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh----hHHHHHHHcCCCE
Q 023494 67 ANFAKLGEQVKAVELAG-CDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKAGADI 141 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G-~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~----~~i~~~~~aGAd~ 141 (281)
.|+.++++.++.+++.+ .+++.+ | .+.+.+|++.++.||+. +.++.+|++..|.. .+++.++++|||+
T Consensus 16 ~D~~~~~~a~~i~~~~~~~~~~Kv----g--~~l~~~G~~~v~~l~~~-~~~v~lD~K~~DI~nT~~~~v~~~~~~GaD~ 88 (213)
T 1vqt_A 16 VLSLDMEDPIRFIDENGSFEVVKV----G--HNLAIHGKKIFDELAKR-NLKIILDLKFCDIPSTVERSIKSWDHPAIIG 88 (213)
T ss_dssp EEECCSSSHHHHHHHHCCCSEEEE----C--HHHHTTCTHHHHHHHTT-TCEEEEEEEECSCHHHHHHHHHHHCCTTEEE
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEE----C--HHHHhhCHHHHHHHHHC-CCCEEEEeecccCchHHHHHHHHHHHCCCCE
Confidence 57777777777776653 233333 4 24334999999999985 67788888876654 4677788999999
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhh
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL 221 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~ 221 (281)
+|+|.+.. .+.+..+++.++ +..+++.+-.+++-+ +. +.++.+..| .++|++ +.... +.++++|+.++
T Consensus 89 vTvh~~~G-~~~l~~~~~~~~--~~~~~V~~lts~~~~-l~---~~v~~~a~~-~e~G~d---vV~~~-~~~~~ir~~~~ 156 (213)
T 1vqt_A 89 FTVHSCAG-YESVERALSATD--KHVFVVVKLTSMEGS-LE---DYMDRIEKL-NKLGCD---FVLPG-PWAKALREKIK 156 (213)
T ss_dssp EEEEGGGC-HHHHHHHHHHCS--SEEEEECCCTTSCCC-HH---HHHHHHHHH-HHHTCE---EECCH-HHHHHHTTTCC
T ss_pred EEEeccCC-HHHHHHHHHhcC--CCeEEEEEeCCCCHH-HH---HHHHHHHHH-hcCCCE---EEEcH-HHHHHHHHHCC
Confidence 99999863 333444443322 223344322122111 11 111111222 344443 22111 45555555432
Q ss_pred hcCCCCeEEEecCCChhc----------HHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 222 EKGVNPWIEVDGGVGPKN----------AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 222 ~~~~~~~I~VDGGI~~e~----------i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.+ .|+|||++++ ..+ +++|+|++|+||+||+++||.++++++++.+
T Consensus 157 -----~~-~v~pGI~~~~~~~dq~rv~t~~~-i~aGad~iVvGR~I~~a~dP~~aa~~i~~~i 212 (213)
T 1vqt_A 157 -----GK-ILVPGIRMEVKADDQKDVVTLEE-MKGIANFAVLGREIYLSENPREKIKRIKEMR 212 (213)
T ss_dssp -----SC-EEECCBC---------CCBCHHH-HTTTCSEEEESHHHHTSSCHHHHHHHHTC--
T ss_pred -----CC-EEECCCCCCCCccchhhcCCHHH-HHCCCCEEEEChhhcCCCCHHHHHHHHHHHh
Confidence 24 7999999886 578 9999999999999999999999999998754
|
| >2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A | Back alignment and structure |
|---|
Probab=99.57 E-value=1.4e-13 Score=120.37 Aligned_cols=189 Identities=15% Similarity=0.131 Sum_probs=139.5
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
.+.|.+-..|..++.+.++.+.++|++++++...+ | ...+.++.+++ ++..+.+.. +.++ +.++.+.++|
T Consensus 14 ~ii~vi~~~~~~~~~~~~~~l~~gGv~~iel~~k~----~---~~~~~i~~~~~-~~~~~gag~-vl~~-d~~~~A~~~G 83 (207)
T 2yw3_A 14 RLLPLLTVRGGEDLLGLARVLEEEGVGALEITLRT----E---KGLEALKALRK-SGLLLGAGT-VRSP-KEAEAALEAG 83 (207)
T ss_dssp CEEEEECCCSCCCHHHHHHHHHHTTCCEEEEECSS----T---HHHHHHHHHTT-SSCEEEEES-CCSH-HHHHHHHHHT
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeCCC----h---HHHHHHHHHhC-CCCEEEeCe-EeeH-HHHHHHHHcC
Confidence 47888887888899999999999999999997433 2 24578888888 777778877 4344 4788999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
||+++..... .++++..+++|....+-. .|+-|..+.+...+|||-+ +|. ... ..++.|+.++.
T Consensus 84 Ad~v~~~~~d------~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~~Gad~v~~---fpa---~~~--gG~~~lk~l~~ 147 (207)
T 2yw3_A 84 AAFLVSPGLL------EEVAALAQARGVPYLPGV--LTPTEVERALALGLSALKF---FPA---EPF--QGVRVLRAYAE 147 (207)
T ss_dssp CSEEEESSCC------HHHHHHHHHHTCCEEEEE--CSHHHHHHHHHTTCCEEEE---TTT---TTT--THHHHHHHHHH
T ss_pred CCEEEcCCCC------HHHHHHHHHhCCCEEecC--CCHHHHHHHHHCCCCEEEE---ecC---ccc--cCHHHHHHHHh
Confidence 9999877542 356778888888765543 3444444444446999966 562 111 02455667776
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCC---HHHHHHHHHHhcCcCc
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD---YAEAIKGIKTSKRPQA 278 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~d---p~~~~~~l~~~~~~~~ 278 (281)
.++ ++++...||||++|+.+++++|++.+++||+|++ +| +++.++++.+.+++++
T Consensus 148 ~~~----~ipvvaiGGI~~~n~~~~l~aGa~~vavgSai~~-~d~~~i~~~a~~~~~~~~~~~ 205 (207)
T 2yw3_A 148 VFP----EVRFLPTGGIKEEHLPHYAALPNLLAVGGSWLLQ-GNLEAVRAKVRAAKALLSPQA 205 (207)
T ss_dssp HCT----TCEEEEBSSCCGGGHHHHHTCSSBSCEEESGGGS-SCHHHHHHHHHHHHHHC----
T ss_pred hCC----CCcEEEeCCCCHHHHHHHHhCCCcEEEEehhhhC-CCHHHHHHHHHHHHHHhcccC
Confidence 653 4789999999999999999999999999999998 88 5777788877776653
|
| >2h6r_A Triosephosphate isomerase; beta-alpha barrel; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.57 E-value=5.5e-15 Score=130.43 Aligned_cols=168 Identities=17% Similarity=0.262 Sum_probs=114.6
Q ss_pred cccccccCCHHHHHHcCcCCCCCeeE-EEEecChhhH-----HHHHHHcCCCEEEE-cccc-cccccHHHHHHHHHHcCC
Q 023494 95 RFVPNITIGPLVVDALRPVTDLPLDV-HLMIVEPEQR-----VPDFIKAGADIVSV-HCEQ-SSTIHLHRTLNQIKDLGA 166 (281)
Q Consensus 95 ~fvpn~~~G~~~I~~ir~~t~~~ida-HLmv~dp~~~-----i~~~~~aGAd~Itv-h~Ea-~~~~~i~~~l~~ik~~G~ 166 (281)
.|.|.+.+ ++.+|+.+++|+.+ |+-..+++.| ++++.++|||+|++ |.|- .+..++.+.++.++++|+
T Consensus 37 ~~~~~~~~----l~~v~~~~~~~v~aqd~~~~~~ga~tGei~~~~~~~~Gad~Vll~~ser~l~~~e~~~~~~~a~~~Gl 112 (219)
T 2h6r_A 37 GVAPQFVD----LRMIVENVNIPVYAQHIDNINPGSHTGHILAEAIKDCGCKGTLINHSEKRMLLADIEAVINKCKNLGL 112 (219)
T ss_dssp EEECCTTT----HHHHHHHCCSCBEESCCCSCCSBSCTTCCCHHHHHHHTCCEEEESBTTBCCBHHHHHHHHHHHHHHTC
T ss_pred EEECCHHH----HHHHHHHcCCcEEEEECChhhcCCccCchHHHHHHHcCCCEEEECCccccCCHHHHHHHHHHHHHCCC
Confidence 34565554 34445445788855 4446677777 99999999999999 5541 134568899999999999
Q ss_pred cEEEEECCCCCHHHHHHhhccCCEEEEEeecC-CCCC---CccchhHHHHHH-HHHHHhhhcCCCCeEEEecCCC-hhcH
Q 023494 167 KAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-GFGG---QSFIESQVKKIS-DLRRMCLEKGVNPWIEVDGGVG-PKNA 240 (281)
Q Consensus 167 k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p-G~~G---Q~f~~~~l~kI~-~lr~l~~~~~~~~~I~VDGGI~-~e~i 240 (281)
.+.+.+++.++.+.+..+ ..++|.+-+++. | +| +.+.++.++... .+|+.. .+.+|.+.|||+ ++.+
T Consensus 113 ~~iv~v~~~~e~~~~~~~--~~~~i~~~~~~~iG-tG~~~~t~~~~~~~~~~~~ir~~~----~~~~ii~ggGI~~~~~~ 185 (219)
T 2h6r_A 113 ETIVCTNNINTSKAVAAL--SPDCIAVEPPELIG-TGIPVSKANPEVVEGTVRAVKEIN----KDVKVLCGAGISKGEDV 185 (219)
T ss_dssp EEEEEESSSHHHHHHTTT--CCSEEEECCCC---------------CSHHHHHHHHHHC----TTCEEEECSSCCSHHHH
T ss_pred eEEEEeCCchHHHHHHhC--CCCEEEEEeccccc-cCCCCccCCHHHHHHHHHHHHhcc----CCCeEEEEeCcCcHHHH
Confidence 999999987766555443 356776655544 5 46 667665333333 333332 147899999999 5788
Q ss_pred HHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 241 YKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 241 ~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
..+.+.|+|.+++||++++++||.+.+++|++.
T Consensus 186 ~~~~~~gaDgvlVGsAi~~~~d~~~~~~~l~~~ 218 (219)
T 2h6r_A 186 KAALDLGAEGVLLASGVVKAKNVEEAIRELIKF 218 (219)
T ss_dssp HHHHTTTCCCEEESHHHHTCSSHHHHHHHHCC-
T ss_pred HHHhhCCCCEEEEcHHHhCcccHHHHHHHHHHh
Confidence 889999999999999999999999998888653
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=99.55 E-value=7.5e-14 Score=120.63 Aligned_cols=187 Identities=18% Similarity=0.159 Sum_probs=133.3
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC--CCCeeEEEEecChhhHHHHHH
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t--~~~idaHLmv~dp~~~i~~~~ 135 (281)
..+.|++-..|..+..+.++.+.++|++++++... .| .+.+.++.+|+.. +.++.+. .+.+|.. .+.+.
T Consensus 10 ~~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~----~~---~~~~~i~~ir~~~~~~~~ig~~-~v~~~~~-~~~a~ 80 (205)
T 1wa3_A 10 HKIVAVLRANSVEEAKEKALAVFEGGVHLIEITFT----VP---DADTVIKELSFLKEKGAIIGAG-TVTSVEQ-CRKAV 80 (205)
T ss_dssp HCEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETT----ST---THHHHHHHTHHHHHTTCEEEEE-SCCSHHH-HHHHH
T ss_pred CCEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCC----Ch---hHHHHHHHHHHHCCCCcEEEec-ccCCHHH-HHHHH
Confidence 35899999999999999999999999999988532 12 3466788888763 3444443 3457764 57788
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
++|||++ ++... . .++++.++++|+.+-.-+ .|+-+....+...+|+|-+ +|+ .+..++.+++
T Consensus 81 ~~Gad~i-v~~~~--~---~~~~~~~~~~g~~vi~g~--~t~~e~~~a~~~Gad~vk~---~~~------~~~g~~~~~~ 143 (205)
T 1wa3_A 81 ESGAEFI-VSPHL--D---EEISQFCKEKGVFYMPGV--MTPTELVKAMKLGHTILKL---FPG------EVVGPQFVKA 143 (205)
T ss_dssp HHTCSEE-ECSSC--C---HHHHHHHHHHTCEEECEE--CSHHHHHHHHHTTCCEEEE---TTH------HHHHHHHHHH
T ss_pred HcCCCEE-EcCCC--C---HHHHHHHHHcCCcEECCc--CCHHHHHHHHHcCCCEEEE---cCc------cccCHHHHHH
Confidence 8999999 77653 1 467888899998876533 2444433333345887743 221 1122344444
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCC---HHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKD---YAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~d---p~~~~~~l~~~~~ 275 (281)
+++.. . ++++.++|||+.+|+.++.++|||.+++||+||+ +| |.+.++++++.++
T Consensus 144 l~~~~---~-~~pvia~GGI~~~~~~~~~~~Ga~~v~vGs~i~~-~d~~~~~~~~~~~~~~~~ 201 (205)
T 1wa3_A 144 MKGPF---P-NVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVK-GTPDEVREKAKAFVEKIR 201 (205)
T ss_dssp HHTTC---T-TCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHC-SCHHHHHHHHHHHHHHHH
T ss_pred HHHhC---C-CCcEEEcCCCCHHHHHHHHHCCCCEEEECccccC-CCHHHHHHHHHHHHHHHH
Confidence 44322 1 5899999999999999999999999999999999 89 8888888887654
|
| >4dbe_A Orotidine 5'-phosphate decarboxylase; TIM barrel, orotidine 5'-monophosphate decarboxylase, inhibi lyase-lyase inhibitor complex; HET: BMP; 1.79A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.7e-13 Score=121.30 Aligned_cols=189 Identities=17% Similarity=0.151 Sum_probs=132.6
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCC-CeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDL-PLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~-~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+-++|+|+....+.++.+... ++++.+ | .+.+ .+|++.++.|++..++ ++.+|+|..|..+.+..+.+.-+
T Consensus 5 ~livALD~~~al~l~~~l~~~-v~~~Kv----G--~~l~~~~G~~~v~~L~~~~~~~~VflDlK~~DI~nTv~~~~~~~~ 77 (222)
T 4dbe_A 5 RVILAMDKPLSYQVLKEMENE-LYGIKV----G--LPLVLDLGVDKTRELLIGLDVEEIIVDFKLADIGYIMKSIVERLS 77 (222)
T ss_dssp CEEEEESSCCCHHHHHHHGGG-CSEEEE----E--HHHHHHHCHHHHHHHHHTCCCSEEEEEEEECSCHHHHHHHHTTCT
T ss_pred CeEEECCHHHHHHHHHHhCCc-CcEEEE----C--HHHHHhhCHHHHHHHHHhcCCCeEEEEeeecchHHHHHHHHHHHH
Confidence 457889987444444444433 677766 3 3444 7999999999885578 99999999999987776554433
Q ss_pred --CEEEEcccccc-cccHHHHHHHHHHcCCcEEEEECCCCCH------HHHHHhhc--cCCEEEEEeecCCCCCCccchh
Q 023494 140 --DIVSVHCEQSS-TIHLHRTLNQIKDLGAKAGVVLNPATSL------SAIECVLD--VVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 140 --d~Itvh~Ea~~-~~~i~~~l~~ik~~G~k~Glai~p~t~i------e~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
|++|+|.-. . .+.++.+++.+++.|..+-+....+.+- +.+..+.. .+|.+.. ++ ..|
T Consensus 78 ~~d~vTVh~~~-G~~~~~~~a~~~~~~~~~~v~vLts~s~~~~~~~~~~~~a~~a~~~g~~GvV~-------sa--t~p- 146 (222)
T 4dbe_A 78 FANSFIAHSFI-GVKGSLDELKRYLDANSKNLYLVAVMSHEGWSTLFADYIKNVIREISPKGIVV-------GG--TKL- 146 (222)
T ss_dssp TCSEEEEESTT-CTTTTHHHHHHHHHHTTCEEEEEEECSSTTCCCTTHHHHHHHHHHHCCSEEEE-------CT--TCH-
T ss_pred hCCEEEEEcCc-CcHHHHHHHHHHHHhcCCcEEEEEeCCCcchHHHHHHHHHHHHHHhCCCEEEE-------CC--CCH-
Confidence 999999875 3 4678899999888887665544433321 22233322 2554432 11 123
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.++.+|+..+ + .+.|.+||+++ +..+++++|+|.+|+||.|++++||.++++++++.++
T Consensus 147 --~e~~~ir~~~~----~-~~~vtPGI~~~g~tp~~a~~~Gad~iVVGR~I~~A~dP~~aa~~i~~~i~ 208 (222)
T 4dbe_A 147 --DHITQYRRDFE----K-MTIVSPGMGSQGGSYGDAVCAGADYEIIGRSIYNAGNPLTALRTINKIIE 208 (222)
T ss_dssp --HHHHHHHHHCT----T-CEEEECCBSTTSBCTTHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhCC----C-CEEEcCCcccCccCHHHHHHcCCCEEEECHHhcCCCCHHHHHHHHHHHHH
Confidence 34555566553 2 36689999988 8889999999999999999999999999999887654
|
| >3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=3.5e-13 Score=122.92 Aligned_cols=167 Identities=19% Similarity=0.171 Sum_probs=123.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------------hHHHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------------QRVPDFIK 136 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------------~~i~~~~~ 136 (281)
++++ +..+.++|+|+||++ |+.++++++-++.+++.+|+..+ +.+|.|+...+ +.++.+.+
T Consensus 48 s~~~-a~~A~~gGAdRIELc--~~l~~GGlTPS~g~i~~a~~~~~--ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~ 122 (287)
T 3iwp_A 48 SVES-AVNAERGGADRIELC--SGLSEGGTTPSMGVLQVVKQSVQ--IPVFVMIRPRGGDFLYSDREIEVMKADIRLAKL 122 (287)
T ss_dssp SHHH-HHHHHHHTCSEEEEC--BCGGGTCBCCCHHHHHHHHTTCC--SCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHhCCCEEEEC--CCCCCCCCCCCHHHHHHHHHhcC--CCeEEEEecCCCCcccCHHHHHHHHHHHHHHHH
Confidence 4444 556677899999998 88888899999999999998754 66888996443 26788999
Q ss_pred cCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCC-----CCHHHHHHhhc-cCCEEEEEeecCCCCCC-ccchh
Q 023494 137 AGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPA-----TSLSAIECVLD-VVDLVLIMSVNPGFGGQ-SFIES 208 (281)
Q Consensus 137 aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~-----t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ-~f~~~ 208 (281)
+|||+|.|++-.. ...+...+.+.++..+. .++++++. ++.+.++.+++ .+|.||- +|| +-.++
T Consensus 123 ~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~~-l~vTFHRAFD~~~d~~~Ale~Li~lGvdrILT-------SG~~~~a~~ 194 (287)
T 3iwp_A 123 YGADGLVFGALTEDGHIDKELCMSLMAICRP-LPVTFHRAFDMVHDPMAALETLLTLGFERVLT-------SGCDSSALE 194 (287)
T ss_dssp TTCSEEEECCBCTTSCBCHHHHHHHHHHHTT-SCEEECGGGGGCSCHHHHHHHHHHHTCSEEEE-------CTTSSSTTT
T ss_pred cCCCEEEEeeeCCCCCcCHHHHHHHHHHcCC-CcEEEECchhccCCHHHHHHHHHHcCCCEEEC-------CCCCCChHH
Confidence 9999999997321 13456666666666654 68898887 67777777777 6898875 333 23345
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEE
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVA 253 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~Vv 253 (281)
.++.|+++.+. .+..+.|.++||||++|++++++ +|++.|=.
T Consensus 195 Gl~~Lk~Lv~~---a~~rI~ImaGGGV~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 195 GLPLIKRLIEQ---AKGRIVVMPGGGITDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp THHHHHHHHHH---HTTSSEEEECTTCCTTTHHHHHHHHCCSEEEE
T ss_pred hHHHHHHHHHH---hCCCCEEEECCCcCHHHHHHHHHhhCCCEEeE
Confidence 55555555544 33458899999999999999987 99997754
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.49 E-value=2.5e-12 Score=117.08 Aligned_cols=196 Identities=19% Similarity=0.241 Sum_probs=144.9
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-||| +++-|+ +..+..+.++++|++.||+= -|..|. .=+++.++.+|+.+++|+..-=.+.||. .+..+..+
T Consensus 68 aSPSkG~i~~~~-dp~~~A~~y~~~GA~~IsVl-td~~~f---~Gs~~~L~~ir~~v~lPVl~Kdfi~d~~-qi~ea~~~ 141 (272)
T 3tsm_A 68 ASPSKGLIRPDF-DPPALAKAYEEGGAACLSVL-TDTPSF---QGAPEFLTAARQACSLPALRKDFLFDPY-QVYEARSW 141 (272)
T ss_dssp EETTTEESCSSC-CHHHHHHHHHHTTCSEEEEE-CCSTTT---CCCHHHHHHHHHTSSSCEEEESCCCSTH-HHHHHHHT
T ss_pred CCCCCCccCCCC-CHHHHHHHHHHCCCCEEEEe-cccccc---CCCHHHHHHHHHhcCCCEEECCccCCHH-HHHHHHHc
Confidence 5787 355554 77788889999999999983 243332 2367788899988888986544456665 46678899
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||.|.+-....+.+++.++++.+++.|+.+-+.++ ..++++..+. .+|+|.+-.. .. ..|.+. ++...++
T Consensus 142 GAD~VlLi~a~L~~~~l~~l~~~a~~lGl~~lvevh---~~eEl~~A~~~ga~iIGinnr--~l--~t~~~d-l~~~~~L 213 (272)
T 3tsm_A 142 GADCILIIMASVDDDLAKELEDTAFALGMDALIEVH---DEAEMERALKLSSRLLGVNNR--NL--RSFEVN-LAVSERL 213 (272)
T ss_dssp TCSEEEEETTTSCHHHHHHHHHHHHHTTCEEEEEEC---SHHHHHHHTTSCCSEEEEECB--CT--TTCCBC-THHHHHH
T ss_pred CCCEEEEcccccCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhcCCCEEEECCC--CC--ccCCCC-hHHHHHH
Confidence 999999988765445788999999999999998885 4444554444 5898855322 22 223222 4555566
Q ss_pred HHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.+.++. +.++..-||| +++++..+.++|+|.|++|++|++++||.+++++|..
T Consensus 214 ~~~ip~---~~~vIaesGI~t~edv~~l~~~Ga~gvLVG~almr~~d~~~~~~~l~~ 267 (272)
T 3tsm_A 214 AKMAPS---DRLLVGESGIFTHEDCLRLEKSGIGTFLIGESLMRQHDVAAATRALLT 267 (272)
T ss_dssp HHHSCT---TSEEEEESSCCSHHHHHHHHTTTCCEEEECHHHHTSSCHHHHHHHHHH
T ss_pred HHhCCC---CCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHcCCcCHHHHHHHHHh
Confidence 666543 4678889999 6999999999999999999999999999999998875
|
| >3ve9_A Orotidine-5'-phosphate decarboxylase; TIM barrel fold, orotidine 5'-monopho decarboxylase, lyase; 1.45A {Metallosphaera sedula} PDB: 3ve7_A | Back alignment and structure |
|---|
Probab=99.49 E-value=1.8e-13 Score=120.57 Aligned_cols=184 Identities=17% Similarity=0.143 Sum_probs=121.1
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhH----HHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFIK 136 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~----i~~~~~ 136 (281)
+-++|+|+....+.++.+.. .++++.+ | .+.+ .+|++.+++|++..++++.+|+|..|.... ++.+.+
T Consensus 3 ~livALD~~~al~l~~~l~~-~v~~~Kv----G--~~l~~~~G~~~v~~L~~~~g~~VflDlK~~DIpnTv~~a~~~~~~ 75 (215)
T 3ve9_A 3 RVILSLDSPIPEETLRKLNG-KVAGIKV----G--WPLLLNLGKEKVKELVGLVDGIKILDLKLADIDNTMILIVDELKD 75 (215)
T ss_dssp CEEEEESSCCCHHHHHHHHT-TSSEEEE----E--HHHHHHHCHHHHHHHHTTCCSEEEEEEEECSCHHHHHHHHHHHTT
T ss_pred CeEEECCHHHHHHHHHHhCC-cCcEEEe----c--HHHHHhhCHHHHHHHHHhcCCcEEEEecccCchhHHHHHHHHHHH
Confidence 34788998333344444443 3667666 3 2433 789999999988558999999999998754 356678
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCC------HHHHHHhhcc--CCEEEEEeecCCCCCCccchh
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS------LSAIECVLDV--VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~------ie~~~~~l~~--vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
. +|++|+|.-....+.++.+ +.|..+-+..+.+.+ ++.+.++... +|-+.. ++ ..|
T Consensus 76 ~-ad~vTvh~~~G~~~~~~~~-----~~~~~v~vLts~s~~~~~~~~v~~~a~~a~~~G~~GvV~-------sa--t~~- 139 (215)
T 3ve9_A 76 I-TNSFIAHAFVGVEGSLASL-----SQRVDLFLVLSMSHPGWNDAFYPYLREVARRVNPKGFVA-------PA--TRP- 139 (215)
T ss_dssp T-CSEEEEEGGGCTTTTHHHH-----HHHSEEEEECCCSSTTCCGGGHHHHHHHHHHHCCSEEEC-------CT--TSH-
T ss_pred h-hheEEEeCCCCcHHHHHhH-----hcCCCEEEEEecCCcchHHHHHHHHHHHHHHcCCCceee-------CC--CCH-
Confidence 8 9999999875203345444 234444433333322 1222222222 332221 11 113
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.++.+|+..+ + .+.|+|||+++ ++.+++++|+|.+|+||+||+++||.++++++++.++
T Consensus 140 --~e~~~ir~~~~----~-f~~v~pGI~~~g~~~~~a~~~Gad~iVvGr~I~~a~dp~~a~~~i~~~i~ 201 (215)
T 3ve9_A 140 --SMISRVKGDFP----D-KLVISPGVGTQGAKPGIALCHGADYEIVGRSVYQSADPVRKLEEIVRSQE 201 (215)
T ss_dssp --HHHHHHHHHCT----T-SEEEECCTTSTTCCTTHHHHTTCSEEEECHHHHTSSSHHHHHHHHHHHHH
T ss_pred --HHHHHHHHhCC----C-cEEEcCCCCcCcCCHHHHHHcCCCEEEeCHHHcCCCCHHHHHHHHHHHHH
Confidence 34455566543 2 36799999999 9999999999999999999999999999999987654
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=4.7e-14 Score=129.13 Aligned_cols=190 Identities=15% Similarity=0.160 Sum_probs=124.3
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCccccc---------ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEE
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPN---------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn---------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~It 143 (281)
.+.++.+.++|++++|+- ++ +|. ..-.++.++++++.++.|+.+.....+ .+.++.+.++|||+|.
T Consensus 31 ~~~a~~~~~~Ga~~i~~~--e~--v~~~~~~~~G~~~~~~~~~i~~i~~~~~~Pvi~~~~~~~-~~~~~~~~~aGad~v~ 105 (297)
T 2zbt_A 31 PEQAVIAEEAGAVAVMAL--ER--VPADIRAQGGVARMSDPKIIKEIMAAVSIPVMAKVRIGH-FVEAMILEAIGVDFID 105 (297)
T ss_dssp HHHHHHHHHHTCSEEEEC--SS--CHHHHHHTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTC-HHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHCCCcEEEec--cc--cchHHHhhcCCccCCCHHHHHHHHHhcCCCeEEEeccCC-HHHHHHHHHCCCCEEe
Confidence 466778889999999872 21 221 112578899998888889877655554 4578889999999996
Q ss_pred EcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCC----------------------
Q 023494 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG---------------------- 201 (281)
Q Consensus 144 vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~---------------------- 201 (281)
.+... ++.++++.+++.+..+.+.....++-+.....-..+|+|.+.. +.|++
T Consensus 106 ~~~~~----~~~~~~~~~~~~~~~i~l~~~v~~~~~~~~a~~~Gad~I~v~G-~~~~g~~~e~~~~~~~~~~~i~~~~g~ 180 (297)
T 2zbt_A 106 ESEVL----TPADEEHHIDKWKFKVPFVCGARNLGEALRRIAEGAAMIRTKG-EAGTGNVVEAVRHARTMWKEIRYVQSL 180 (297)
T ss_dssp EETTS----CCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEEECC-CSSSCCTHHHHHHHHHHHHHHHHHHHS
T ss_pred eeCCC----ChHHHHHHHHHhCCCceEEeecCCHHHHHHHHHcCCCEEEEcc-cccCcchHHHHhhHHHHHHHHHHcCCc
Confidence 65432 1223445555553334444322344444433333589986531 11211
Q ss_pred -CCc------cchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 202 -GQS------FIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 202 -GQ~------f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.. ..+..+++++++++.. +..+.++++||| +++++..+.++|||.+++||+||+++||.+.+++|++.
T Consensus 181 t~~~~~~~~~~~~~~~~~i~~l~~~~---~~pvi~~a~GGI~~~e~i~~~~~aGadgvvvGsai~~~~dp~~~~~~l~~~ 257 (297)
T 2zbt_A 181 REDELMAYAKEIGAPFELVKWVHDHG---RLPVVNFAAGGIATPADAALMMHLGMDGVFVGSGIFKSGDPRKRARAIVRA 257 (297)
T ss_dssp CGGGHHHHHHHHTCCHHHHHHHHHHS---SCSSCEEBCSSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHHHHHHHH
T ss_pred CCCCchhhhhcchhhHHHHHHHHHhc---CCCcEEEeeCCCCCHHHHHHHHHcCCCEEEEchHHhCCCCHHHHHHHHHHH
Confidence 110 1233467777777653 222223499999 89999999999999999999999999999999999876
Q ss_pred cC
Q 023494 274 KR 275 (281)
Q Consensus 274 ~~ 275 (281)
++
T Consensus 258 i~ 259 (297)
T 2zbt_A 258 VA 259 (297)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=99.45 E-value=3e-12 Score=115.43 Aligned_cols=187 Identities=17% Similarity=0.185 Sum_probs=137.2
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+..+.++++|+++||+ +-|-.|. .=.++.++.+|+.++.|+.+--.+.|+.+ +..+.++|||+|++...+.
T Consensus 65 ~~p~~~A~~~~~~GA~~isv-lt~~~~f---~G~~~~l~~i~~~v~lPvl~kdfI~d~~q-i~~a~~~GAD~VlL~~~~l 139 (254)
T 1vc4_A 65 VDPVEAALAYARGGARAVSV-LTEPHRF---GGSLLDLKRVREAVDLPLLRKDFVVDPFM-LEEARAFGASAALLIVALL 139 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEE-ECCCSSS---CCCHHHHHHHHHHCCSCEEEESCCCSHHH-HHHHHHTTCSEEEEEHHHH
T ss_pred CCHHHHHHHHHHcCCCEEEE-ecchhhh---ccCHHHHHHHHHhcCCCEEECCcCCCHHH-HHHHHHcCCCEEEECccch
Confidence 57778888999999999998 2222221 12567788888888899877666677653 5668899999999998765
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
+ +++.++++.+++.|+.+-+.++. .+++...+. .+|+|.+-.++.. .|. ..++..+++++.++..+.+.+
T Consensus 140 ~-~~l~~l~~~a~~lGl~~lvev~~---~~E~~~a~~~gad~IGvn~~~l~----~~~-~dl~~~~~L~~~i~~~~~~~~ 210 (254)
T 1vc4_A 140 G-ELTGAYLEEARRLGLEALVEVHT---ERELEIALEAGAEVLGINNRDLA----TLH-INLETAPRLGRLARKRGFGGV 210 (254)
T ss_dssp G-GGHHHHHHHHHHHTCEEEEEECS---HHHHHHHHHHTCSEEEEESBCTT----TCC-BCTTHHHHHHHHHHHTTCCSE
T ss_pred H-HHHHHHHHHHHHCCCeEEEEECC---HHHHHHHHHcCCCEEEEccccCc----CCC-CCHHHHHHHHHhCccccCCCe
Confidence 5 77899999999999999888863 333333333 4788866544321 121 123445556666543212357
Q ss_pred EEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 229 IEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 229 I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
+..-|||+ ++++..+.+ |+|.+++||+|++++||.+++++|.
T Consensus 211 vIAegGI~s~~dv~~l~~-Ga~gvlVGsAl~~~~d~~~~~~~l~ 253 (254)
T 1vc4_A 211 LVAESGYSRKEELKALEG-LFDAVLIGTSLMRAPDLEAALRELV 253 (254)
T ss_dssp EEEESCCCSHHHHHTTTT-TCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred EEEEcCCCCHHHHHHHHc-CCCEEEEeHHHcCCCCHHHHHHHHh
Confidence 77899999 999999999 9999999999999999999998875
|
| >1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.9e-11 Score=106.24 Aligned_cols=184 Identities=16% Similarity=0.131 Sum_probs=129.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..++.+.++.+.++|++++++...+ ..+.+.++.+++. ++..+.+.. +.++ +.++.+.++
T Consensus 18 ~ii~vir~~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~l~vgaGt-vl~~-d~~~~A~~a 88 (224)
T 1vhc_A 18 KIVPVIALDNADDILPLADTLAKNGLSVAEITFRS-------EAAADAIRLLRANRPDFLIAAGT-VLTA-EQVVLAKSS 88 (224)
T ss_dssp CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS-------TTHHHHHHHHHHHCTTCEEEEES-CCSH-HHHHHHHHH
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHcCCCEEEEeccC-------chHHHHHHHHHHhCcCcEEeeCc-EeeH-HHHHHHHHC
Confidence 47777777888889999999999999999997432 2356678877654 556666665 3344 478889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||+++.+... .++++.+|++|...-+-+ .|+-|..+.+...+|||-+ +|. +.. ..++.|+.++
T Consensus 89 GAd~v~~p~~d------~~v~~~ar~~g~~~i~Gv--~t~~e~~~A~~~Gad~vk~---Fpa---~~~--gG~~~lk~l~ 152 (224)
T 1vhc_A 89 GADFVVTPGLN------PKIVKLCQDLNFPITPGV--NNPMAIEIALEMGISAVKF---FPA---EAS--GGVKMIKALL 152 (224)
T ss_dssp TCSEEECSSCC------HHHHHHHHHTTCCEECEE--CSHHHHHHHHHTTCCEEEE---TTT---TTT--THHHHHHHHH
T ss_pred CCCEEEECCCC------HHHHHHHHHhCCCEEecc--CCHHHHHHHHHCCCCEEEE---eeC---ccc--cCHHHHHHHH
Confidence 99999777542 356778888887764333 3444544444446999976 662 111 1255566666
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCC-----CCHHHHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGA-----KDYAEAIKGIKT 272 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a-----~dp~~~~~~l~~ 272 (281)
..++ ++++.+.||||++|+.+++++ |++.+. ||+|+++ .|+++..+..++
T Consensus 153 ~~~~----~ipvvaiGGI~~~N~~~~l~agga~~v~-gS~i~~~~~i~~~~~~~i~~~a~~ 208 (224)
T 1vhc_A 153 GPYA----QLQIMPTGGIGLHNIRDYLAIPNIVACG-GSWFVEKKLIQSNNWDEIGRLVRE 208 (224)
T ss_dssp TTTT----TCEEEEBSSCCTTTHHHHHTSTTBCCEE-ECGGGCHHHHHTTCHHHHHHHHHH
T ss_pred hhCC----CCeEEEECCcCHHHHHHHHhcCCCEEEE-EchhcCcchhccCCHHHHHHHHHH
Confidence 6543 479999999999999999999 888888 9999974 566554444443
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=99.33 E-value=2.4e-11 Score=107.84 Aligned_cols=191 Identities=16% Similarity=0.108 Sum_probs=129.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+.++.+++.|+|++|+--.++.+.. .....+.++++++.++.|+.+.=-+.++. .++.+.++|||.|++....
T Consensus 31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~~~-~~~~~~~i~~i~~~~~iPvi~~Ggi~~~~-~~~~~~~~Gad~V~lg~~~- 107 (252)
T 1ka9_F 31 GDPVEAARAYDEAGADELVFLDISATHEE-RAILLDVVARVAERVFIPLTVGGGVRSLE-DARKLLLSGADKVSVNSAA- 107 (252)
T ss_dssp TCHHHHHHHHHHHTCSCEEEEECCSSTTC-HHHHHHHHHHHHTTCCSCEEEESSCCSHH-HHHHHHHHTCSEEEECHHH-
T ss_pred CCHHHHHHHHHHcCCCEEEEEcCCccccC-ccccHHHHHHHHHhCCCCEEEECCcCCHH-HHHHHHHcCCCEEEEChHH-
Confidence 36677788899999999988422222211 12234568888887788888866667765 6778888999999999764
Q ss_pred ccccHHHHHHHHHHcC---CcEEEEECC-----------------CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchh
Q 023494 150 STIHLHRTLNQIKDLG---AKAGVVLNP-----------------ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G---~k~Glai~p-----------------~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
..++..+.+..+..| +.+++.... .++.+.++.+.+. ++.|++.++.. .|...-+
T Consensus 108 -l~~p~~~~~~~~~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~~~~~--~g~~~g~- 183 (252)
T 1ka9_F 108 -VRRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDR--DGTKEGY- 183 (252)
T ss_dssp -HHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTT--TTTCSCC-
T ss_pred -HhCcHHHHHHHHHcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEecccC--CCCcCCC-
Confidence 233333334444455 346666531 1235555655554 88888765543 2222212
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC-CHHHHHHHHHH
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~-dp~~~~~~l~~ 272 (281)
.++.++++++.. ++++.+.|||+ ++++.++.++|+|.+++||++++.+ ++.+..+.+++
T Consensus 184 ~~~~i~~l~~~~-----~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~l~~ 244 (252)
T 1ka9_F 184 DLRLTRMVAEAV-----GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAE 244 (252)
T ss_dssp CHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 366677777654 47899999999 6999999999999999999999886 88887776654
|
| >1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.5e-11 Score=108.12 Aligned_cols=173 Identities=14% Similarity=0.116 Sum_probs=125.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..++.+.++.+.++|++++++...+ ..+.+.++.+++. ++..+.+.. +.++ +.++.+.++
T Consensus 17 ~~i~v~r~~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~~~vgagt-vi~~-d~~~~A~~a 87 (214)
T 1wbh_A 17 PVVPVIVVKKLEHAVPMAKALVAGGVRVLNVTLRT-------ECAVDAIRAIAKEVPEAIVGAGT-VLNP-QQLAEVTEA 87 (214)
T ss_dssp SEEEEECCSSGGGHHHHHHHHHHTTCCEEEEESCS-------TTHHHHHHHHHHHCTTSEEEEES-CCSH-HHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHcCCCEEEEeCCC-------hhHHHHHHHHHHHCcCCEEeeCE-EEEH-HHHHHHHHc
Confidence 47777777788888899999999999999998433 2345678877654 556666665 4444 378889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||+++.+... .++++..+++|.....-. .|+-|..+.+...+|||-+ +|. +.. ..++.|+.++
T Consensus 88 GAd~v~~p~~d------~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~~Gad~v~~---Fpa---~~~--gG~~~lk~i~ 151 (214)
T 1wbh_A 88 GAQFAISPGLT------EPLLKAATEGTIPLIPGI--STVSELMLGMDYGLKEFKF---FPA---EAN--GGVKALQAIA 151 (214)
T ss_dssp TCSCEEESSCC------HHHHHHHHHSSSCEEEEE--SSHHHHHHHHHTTCCEEEE---TTT---TTT--THHHHHHHHH
T ss_pred CCCEEEcCCCC------HHHHHHHHHhCCCEEEec--CCHHHHHHHHHCCCCEEEE---ecC---ccc--cCHHHHHHHh
Confidence 99999988652 356788888987665543 3444544444456999976 662 111 1245566666
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCCC
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGAK 261 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a~ 261 (281)
..++ ++++...||||++|+.+++++ |++.+. ||+|++++
T Consensus 152 ~~~~----~ipvvaiGGI~~~n~~~~l~agg~~~v~-gS~i~~~~ 191 (214)
T 1wbh_A 152 GPFS----QVRFCPTGGISPANYRDYLALKSVLCIG-GSWLVPAD 191 (214)
T ss_dssp TTCT----TCEEEEBSSCCTTTHHHHHTSTTBSCEE-EGGGSCHH
T ss_pred hhCC----CCeEEEECCCCHHHHHHHHhcCCCeEEE-eccccChh
Confidence 5543 478999999999999999999 888888 99999754
|
| >2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=1.3e-11 Score=114.43 Aligned_cols=145 Identities=17% Similarity=0.192 Sum_probs=107.1
Q ss_pred HHHHHcCcCCCCCeeEEEEec----Chh--hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH
Q 023494 105 LVVDALRPVTDLPLDVHLMIV----EPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~----dp~--~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i 178 (281)
+.++++|+.++.|+.++++++ +|. ++++.+.++|+|.|++|... +.++++.+++.|++++..+ .++.
T Consensus 57 ~~i~~i~~~~~~p~~v~l~v~~~~~~~~~~~~~~~~~~~g~d~V~~~~g~-----p~~~~~~l~~~gi~vi~~v--~t~~ 129 (328)
T 2gjl_A 57 AEIARCRELTDRPFGVNLTLLPTQKPVPYAEYRAAIIEAGIRVVETAGND-----PGEHIAEFRRHGVKVIHKC--TAVR 129 (328)
T ss_dssp HHHHHHHHHCSSCCEEEEEECCCSSCCCHHHHHHHHHHTTCCEEEEEESC-----CHHHHHHHHHTTCEEEEEE--SSHH
T ss_pred HHHHHHHHhcCCCeEEEEeccccccCccHHHHHHHHHhcCCCEEEEcCCC-----cHHHHHHHHHcCCCEEeeC--CCHH
Confidence 346667776778999999997 454 67888999999999999873 2577888999999988655 3333
Q ss_pred HHHHHhhccCCEEEEEeecCC-CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEccc
Q 023494 179 SAIECVLDVVDLVLIMSVNPG-FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 179 e~~~~~l~~vD~IlvmsV~pG-~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSa 256 (281)
+....+...+|+|++.+.++| ..|+ +....++.++++++. .++++.++||| +.+++.+++++|||.+.+||+
T Consensus 130 ~a~~~~~~GaD~i~v~g~~~GG~~G~-~~~~~~~~l~~v~~~-----~~iPviaaGGI~~~~~v~~al~~GAdgV~vGs~ 203 (328)
T 2gjl_A 130 HALKAERLGVDAVSIDGFECAGHPGE-DDIPGLVLLPAAANR-----LRVPIIASGGFADGRGLVAALALGADAINMGTR 203 (328)
T ss_dssp HHHHHHHTTCSEEEEECTTCSBCCCS-SCCCHHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHHTCSEEEESHH
T ss_pred HHHHHHHcCCCEEEEECCCCCcCCCC-ccccHHHHHHHHHHh-----cCCCEEEECCCCCHHHHHHHHHcCCCEEEECHH
Confidence 333333445999998876654 2243 223455666665543 25789999999 589999999999999999999
Q ss_pred ccCCCC
Q 023494 257 VFGAKD 262 (281)
Q Consensus 257 If~a~d 262 (281)
++...+
T Consensus 204 ~~~~~e 209 (328)
T 2gjl_A 204 FLATRE 209 (328)
T ss_dssp HHTSSS
T ss_pred HHcCcc
Confidence 987644
|
| >1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=99.32 E-value=2.6e-11 Score=107.47 Aligned_cols=183 Identities=15% Similarity=0.085 Sum_probs=128.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..++.+.++.+.++|++++++...+ ..+.+.++.+++. ++..+.+... .++ +.++.+.++
T Consensus 27 ~ii~V~r~~~~~~~~~~~~al~~gGv~~iel~~k~-------~~~~~~i~~l~~~~~~~~igagtv-l~~-d~~~~A~~a 97 (225)
T 1mxs_A 27 RILPVITIAREEDILPLADALAAGGIRTLEVTLRS-------QHGLKAIQVLREQRPELCVGAGTV-LDR-SMFAAVEAA 97 (225)
T ss_dssp SEEEEECCSCGGGHHHHHHHHHHTTCCEEEEESSS-------THHHHHHHHHHHHCTTSEEEEECC-CSH-HHHHHHHHH
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEecCC-------ccHHHHHHHHHHhCcccEEeeCeE-eeH-HHHHHHHHC
Confidence 37777766788888899999999999999997432 1245677766553 5666666653 343 478889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchh-HHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES-QVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~-~l~kI~~l 216 (281)
|||+++.+... .++++..+++|....+-. .|+-|..+.+...+|||-+ +|+ + +. .++.|+.+
T Consensus 98 GAd~v~~p~~d------~~v~~~~~~~g~~~i~G~--~t~~e~~~A~~~Gad~vk~---FPa---~---~~~G~~~lk~i 160 (225)
T 1mxs_A 98 GAQFVVTPGIT------EDILEAGVDSEIPLLPGI--STPSEIMMGYALGYRRFKL---FPA---E---ISGGVAAIKAF 160 (225)
T ss_dssp TCSSEECSSCC------HHHHHHHHHCSSCEECEE--CSHHHHHHHHTTTCCEEEE---TTH---H---HHTHHHHHHHH
T ss_pred CCCEEEeCCCC------HHHHHHHHHhCCCEEEee--CCHHHHHHHHHCCCCEEEE---ccC---c---cccCHHHHHHH
Confidence 99999987652 356788888887654433 4554444444446999976 551 1 11 25556666
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC-----CCHHHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA-----KDYAEAIKGIKT 272 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a-----~dp~~~~~~l~~ 272 (281)
+..++ ++++...||||++|+.++++ +|++++. ||+|+++ .|+++..+..++
T Consensus 161 ~~~~~----~ipvvaiGGI~~~N~~~~l~~~Ga~~v~-gSai~~~~~i~~~~~~~i~~~a~~ 217 (225)
T 1mxs_A 161 GGPFG----DIRFCPTGGVNPANVRNYMALPNVMCVG-TTWMLDSSWIKNGDWARIEACSAE 217 (225)
T ss_dssp HTTTT----TCEEEEBSSCCTTTHHHHHHSTTBCCEE-ECTTSCHHHHHTTCHHHHHHHHHH
T ss_pred HhhCC----CCeEEEECCCCHHHHHHHHhccCCEEEE-EchhcCchhhccCCHHHHHHHHHH
Confidence 65543 47999999999999999999 7999999 9999984 556544444443
|
| >3eww_A Ompdecase, orotidine-5'-phosphate decarboxylase; TIM barrel, unusual catalysis, disease mutati glycosyltransferase, lyase, multifunctional enzyme; HET: U1P; 1.10A {Homo sapiens} PDB: 2qcl_A* 2qcm_A* 3ewu_A* 2qcf_A* 3ex6_A* 3ex4_A* 2qcd_A* 2qcc_A 2qcg_A* 2qch_A* 2qcn_A* 2qce_A* 3ewz_A* 3ex1_A* 3ex2_A* 3ex3_A* 3ex0_A* 3ex5_A* 3l0k_A* 3l0n_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-10 Score=104.70 Aligned_cols=180 Identities=14% Similarity=0.114 Sum_probs=117.4
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+-++++|+.+.++.++.+++.+ +.++.+ | + +.+ .+|++.++.|++. .++++.+|+|..|....+....
T Consensus 33 ~LiVALD~~~~~~al~l~~~l~~~v~~~Kv----G-~-~l~~~~G~~~v~~L~~~a~~~g~~VflDlK~~DIpnTv~~a~ 106 (260)
T 3eww_A 33 NLCLSADVSLARELLQLADALGPSICMLKT----H-V-DILNDFTLDVMKELITLAKCHEFLIFENRKFADIGNTVKKQY 106 (260)
T ss_dssp CEEEECCCSCHHHHHHHHHHHGGGCSEEEE----C-G-GGCTTCCHHHHHHHHHHHHHHTCEEEEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHhCCCceEEEE----c-H-HHHHHhCHHHHHHHHHHHhhcCCeEEEEeeccccHHHHHHHH
Confidence 4468899999998888877653 555555 3 2 333 8999999999873 5889999999999998877533
Q ss_pred -----H--cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH--------HHHHHhhcc----CCEEEEEee
Q 023494 136 -----K--AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL--------SAIECVLDV----VDLVLIMSV 196 (281)
Q Consensus 136 -----~--aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i--------e~~~~~l~~----vD~IlvmsV 196 (281)
+ .|+|++|+|.-.. .+.++.+++..+..++.+-+....+.+- +....+... +|-|.. .
T Consensus 107 ~~a~~~~~~~ad~vTVha~~G-~~~~~aa~~~~~~~~~gv~vLtsms~~g~l~~~~~~e~v~~~A~~~~~g~dGvV~--s 183 (260)
T 3eww_A 107 EGGIFKIASWADLVNAHVVPG-SGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFIS--G 183 (260)
T ss_dssp HCTTTCGGGTCSEEEEESTTC-THHHHHHHHHHTTTTCEEEEECCCCSTTCCCCTHHHHHHHHHHHHTTTTEEEEEC--S
T ss_pred HHHHHhhhccCCEEEEeCCCC-HHHHHHHHHhhcccCCeEEEEEEcCCchhcccCCHHHHHHHHHHhccCCCceEEe--C
Confidence 2 4799999998753 4445555554332333333332222110 111111111 111110 0
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHH-HcCCcEEEEcccccCCCCHH
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVI-EAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~-~aGAD~~VvGSaIf~a~dp~ 264 (281)
+ + + ..+.++ +.|..||++. |..+++ ++|+|.+|+||.||+++||.
T Consensus 184 --~---~---------~--------~~~~~f-~~vTPGIr~~~~~~~~~~r~~tp~~a~~~aGad~iVvGR~I~~a~dp~ 240 (260)
T 3eww_A 184 --S---R---------V--------SMKPEF-LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRL 240 (260)
T ss_dssp --S---C---------C--------CCCTTS-EEEECSBCSSSEECTTSCEEBCHHHHHTTSCCSEEEESHHHHTSSCHH
T ss_pred --h---h---------h--------ccCCCc-EEECCCcCCCCCCCccCCCccCHHHHHHhcCCCEEEEChhhcCCCCHH
Confidence 0 0 0 012345 4589999975 688999 99999999999999999999
Q ss_pred HHHHHHHHh
Q 023494 265 EAIKGIKTS 273 (281)
Q Consensus 265 ~~~~~l~~~ 273 (281)
++++++++.
T Consensus 241 ~a~~~~~~~ 249 (260)
T 3eww_A 241 EAAEMYRKA 249 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
|
| >1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.2e-10 Score=105.39 Aligned_cols=188 Identities=20% Similarity=0.203 Sum_probs=119.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC-HHHHHHcCcCCCCCeeEEEEecCh-----hh---HHHHHHHc-C
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-PLVVDALRPVTDLPLDVHLMIVEP-----EQ---RVPDFIKA-G 138 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G-~~~I~~ir~~t~~~idaHLmv~dp-----~~---~i~~~~~a-G 138 (281)
+-++++.++.+.++|+|.+.+-+ .|......+ ..+++.+++ +...+..+.+ ++ +.+.+.++ |
T Consensus 22 ~p~~~~~~~~l~~~Gad~ielg~---pr~~~~g~~~~~~~~~l~~-----~~~~~~pn~~~~~~~~~~~~f~~~a~~agg 93 (264)
T 1xm3_A 22 YPSFDIQKEAVAVSESDILTFAV---RRMNIFEASQPNFLEQLDL-----SKYTLLPNTAGASTAEEAVRIARLAKASGL 93 (264)
T ss_dssp SSCHHHHHHHHHHHTCSEEEEET---TSSTTC-------CTTCCG-----GGSEEEEECTTCSSHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHcCCeEEEEcc---cccccCCCCHHHHHHHHHh-----cCCeEcCCccccCCHHHHHHHHHHHHHcCC
Confidence 34777778899999999998853 233111111 123333333 2233333333 32 45566676 5
Q ss_pred CCEEEEccccc-c--cccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHH
Q 023494 139 ADIVSVHCEQS-S--TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~-~--~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
++++.+..-.. + .++..++++.++++ |+.++....|+ .++++...+ ..|+|..+....|.. +... ..+
T Consensus 94 ~~~i~l~i~~d~~~~~~e~~~~~~~a~~~~~~g~~vi~~~~~~--~~~a~~~~~~gad~v~~~~~~~Gt~-~~~~--~~~ 168 (264)
T 1xm3_A 94 CDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDD--VVLARKLEELGVHAIMPGASPIGSG-QGIL--NPL 168 (264)
T ss_dssp CSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSC--HHHHHHHHHHTCSCBEECSSSTTCC-CCCS--CHH
T ss_pred CCeEEEeecCCCcccccchHHHHHHHHHHHCCCeEEEEEcCCC--HHHHHHHHHhCCCEEEECCcccCCC-CCCC--CHH
Confidence 67776653221 1 25677899999998 99998655543 345555544 489984432222322 1121 144
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.++++++.. ++++.++|||+ ++++.++.++|||.+++||+|++++||.+.+++|++.+
T Consensus 169 ~l~~i~~~~-----~iPviv~gGI~t~eda~~~~~~GAdgViVGSAi~~a~dp~~~~~~l~~~v 227 (264)
T 1xm3_A 169 NLSFIIEQA-----KVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLAV 227 (264)
T ss_dssp HHHHHHHHC-----SSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCHHHHHHHHHcCCCEEEEcHHHhCCCCHHHHHHHHHHHH
Confidence 556666532 47899999997 99999999999999999999999999998888888754
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-10 Score=101.63 Aligned_cols=181 Identities=17% Similarity=0.160 Sum_probs=127.2
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE--------ecChh-hHHHHHHHcCC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--------IVEPE-QRVPDFIKAGA 139 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm--------v~dp~-~~i~~~~~aGA 139 (281)
..+..+..+.++++|+..+.+ + +++.++++|+.+++|+..-.+ ..+|. +.++.+.++||
T Consensus 35 ~~~~~~~A~a~~~~Ga~~i~~----~--------~~~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~~Ga 102 (232)
T 3igs_A 35 PEIVAAMALAAEQAGAVAVRI----E--------GIDNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQAGA 102 (232)
T ss_dssp HHHHHHHHHHHHHTTCSEEEE----E--------SHHHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTC
T ss_pred cchHHHHHHHHHHCCCeEEEE----C--------CHHHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHHcCC
Confidence 335666677888999998765 2 478899999998999753222 12232 34677899999
Q ss_pred CEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCC-CccchhHHHHHHHH
Q 023494 140 DIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG-QSFIESQVKKISDL 216 (281)
Q Consensus 140 d~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~G-Q~f~~~~l~kI~~l 216 (281)
|.|.+-.... ..+.+.++++.+++.|+.+++.++ ..+..+...+ .+|+|.+ ..-|+.. .+-....++.++++
T Consensus 103 d~V~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~---t~eea~~a~~~Gad~Ig~--~~~g~t~~~~~~~~~~~~i~~l 177 (232)
T 3igs_A 103 AIIAVDGTARQRPVAVEALLARIHHHHLLTMADCS---SVDDGLACQRLGADIIGT--TMSGYTTPDTPEEPDLPLVKAL 177 (232)
T ss_dssp SEEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECC---SHHHHHHHHHTTCSEEEC--TTTTSSSSSCCSSCCHHHHHHH
T ss_pred CEEEECccccCCHHHHHHHHHHHHHCCCEEEEeCC---CHHHHHHHHhCCCCEEEE--cCccCCCCCCCCCCCHHHHHHH
Confidence 9998765431 135688999999999999888764 4555555444 4899853 1224432 11112245666666
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++. ++++...|||+ ++++..+.++|||.+++||+|++ |....++|.+.++
T Consensus 178 ~~~------~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsal~~---p~~~~~~~~~~i~ 228 (232)
T 3igs_A 178 HDA------GCRVIAEGRYNSPALAAEAIRYGAWAVTVGSAITR---LEHICGWYNDALK 228 (232)
T ss_dssp HHT------TCCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHHH
T ss_pred Hhc------CCcEEEECCCCCHHHHHHHHHcCCCEEEEehHhcC---HHHHHHHHHHHHH
Confidence 542 47898999995 99999999999999999999995 6777777776654
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.3e-10 Score=100.49 Aligned_cols=179 Identities=18% Similarity=0.241 Sum_probs=126.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE--------ecCh-hhHHHHHHHcCCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--------IVEP-EQRVPDFIKAGAD 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm--------v~dp-~~~i~~~~~aGAd 140 (281)
....+..+.++++|+..|.+ + +++.++++|+.+++|+..-.+ ..+| .+.++.+.++|||
T Consensus 36 ~~~~~~A~a~~~~Ga~~i~~----~--------~~~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~aGad 103 (229)
T 3q58_A 36 EIVAAMAQAAASAGAVAVRI----E--------GIENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQAGAD 103 (229)
T ss_dssp HHHHHHHHHHHHTTCSEEEE----E--------SHHHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHHHTCS
T ss_pred chHHHHHHHHHHCCCcEEEE----C--------CHHHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHHcCCC
Confidence 35566667888999998865 2 578899999999999754222 1223 2357778999999
Q ss_pred EEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCC--ccchhHHHHHHHH
Q 023494 141 IVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQ--SFIESQVKKISDL 216 (281)
Q Consensus 141 ~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ--~f~~~~l~kI~~l 216 (281)
.|.+-.... ..+.+.++++.+++.|+.++..++ ..+..+...+ .+|+|.+ ..-|+.+. .+.+ .++.++++
T Consensus 104 ~I~l~~~~~~~p~~l~~~i~~~~~~g~~v~~~v~---t~eea~~a~~~Gad~Ig~--~~~g~t~~~~~~~~-~~~li~~l 177 (229)
T 3q58_A 104 IIAFDASFRSRPVDIDSLLTRIRLHGLLAMADCS---TVNEGISCHQKGIEFIGT--TLSGYTGPITPVEP-DLAMVTQL 177 (229)
T ss_dssp EEEEECCSSCCSSCHHHHHHHHHHTTCEEEEECS---SHHHHHHHHHTTCSEEEC--TTTTSSSSCCCSSC-CHHHHHHH
T ss_pred EEEECccccCChHHHHHHHHHHHHCCCEEEEecC---CHHHHHHHHhCCCCEEEe--cCccCCCCCcCCCC-CHHHHHHH
Confidence 998765421 135688999999999999888764 4555555444 5999853 12244321 2222 35556655
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++. ++++...|||+ ++++..+.++|||.+++||+|++ |....+++.+.++
T Consensus 178 ~~~------~ipvIA~GGI~t~~d~~~~~~~GadgV~VGsai~~---p~~~~~~f~~~~~ 228 (229)
T 3q58_A 178 SHA------GCRVIAEGRYNTPALAANAIEHGAWAVTVGSAITR---IEHICQWFSHAVK 228 (229)
T ss_dssp HTT------TCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHC---HHHHHHHHHHHHC
T ss_pred HHc------CCCEEEECCCCCHHHHHHHHHcCCCEEEEchHhcC---hHHHHHHHHHHHh
Confidence 532 47899999995 99999999999999999999996 6667777776654
|
| >1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=99.22 E-value=3.5e-11 Score=107.67 Aligned_cols=179 Identities=17% Similarity=0.224 Sum_probs=118.6
Q ss_pred EeccCcc--CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 64 ILSANFA--KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 64 ila~D~~--~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+.++|+. ...+.++.+.++|+|.+++.+-+|... .-..+.++++|+ ++.|+.. |...+..+ ++|+|.
T Consensus 12 i~~gDP~~~~t~~~~~~l~~~GaD~ielG~S~Gvt~---~~~~~~v~~ir~-~~~Pivl--m~y~~n~i-----~~G~dg 80 (240)
T 1viz_A 12 VFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTE---DNVLRMMSKVRR-FLVPCVL--EVSAIEAI-----VPGFDL 80 (240)
T ss_dssp EEEECTTSCCCHHHHHHHHTSCCSEEEECC----CH---HHHHHHHHHHTT-SSSCEEE--ECSCGGGC-----CSCCSE
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCH---HHHHHHHHHhhC-cCCCEEE--ecCccccc-----cCCCCE
Confidence 4556663 345678999999999999987666322 225678999998 7888886 77653222 789999
Q ss_pred EEEcccccccccHHHH-----HHHHHHcC-----CcEEE----EECCCCC------------HHHHHHhhccC-----CE
Q 023494 142 VSVHCEQSSTIHLHRT-----LNQIKDLG-----AKAGV----VLNPATS------------LSAIECVLDVV-----DL 190 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~-----l~~ik~~G-----~k~Gl----ai~p~t~------------ie~~~~~l~~v-----D~ 190 (281)
+.+..-. .++-..+ ...++++| ++.-. .++|++. .+++..+.... .+
T Consensus 81 ~iiPdLp--~ee~~~~~~g~~~~a~~~~g~~~~~l~~i~~gy~l~~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~ 158 (240)
T 1viz_A 81 YFIPSVL--NSKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPI 158 (240)
T ss_dssp EEEEEET--TBSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSE
T ss_pred EEEcccC--cccChhhhcchhHHHHHHcCCCCcceeeeecccEEECCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCE
Confidence 9998542 2211223 57789999 77655 7788766 34555554332 46
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHH
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
|.+-+ -|..+ ..+.|+++++... +.++.|.|||+ +++++++.+ |||.+|+||++.+ +|++.+++
T Consensus 159 VYl~s--~G~~~------~~~~i~~i~~~~~----~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGSa~v~--~~~~~~~~ 223 (240)
T 1viz_A 159 FYLEY--SGVLG------DIEAVKKTKAVLE----TSTLFYGGGIKDAETAKQYAE-HADVIVVGNAVYE--DFDRALKT 223 (240)
T ss_dssp EEEEC--TTSCC------CHHHHHHHHHTCS----SSEEEEESSCCSHHHHHHHHT-TCSEEEECTHHHH--CHHHHHTH
T ss_pred EEEeC--CCccC------hHHHHHHHHHhcC----CCCEEEEeccCCHHHHHHHHh-CCCEEEEChHHHh--CHHHHHHH
Confidence 64433 34322 3445566665431 46899999999 899999888 9999999999996 45434444
Q ss_pred H
Q 023494 270 I 270 (281)
Q Consensus 270 l 270 (281)
+
T Consensus 224 v 224 (240)
T 1viz_A 224 V 224 (240)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=99.20 E-value=2.1e-10 Score=106.56 Aligned_cols=141 Identities=21% Similarity=0.293 Sum_probs=108.5
Q ss_pred HHHHHcCcCCCCCeeEEEEecCh--hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEP--EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp--~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~ 182 (281)
+.++++|+.++.|+.+.+++.+| .++++.+.++|+|.|.+|... +.++++.+++.|++++..+. +.+...
T Consensus 67 ~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~~g~-----p~~~~~~l~~~g~~v~~~v~---s~~~a~ 138 (326)
T 3bo9_A 67 KAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFGAGN-----PTKYIRELKENGTKVIPVVA---SDSLAR 138 (326)
T ss_dssp HHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEESSC-----CHHHHHHHHHTTCEEEEEES---SHHHHH
T ss_pred HHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEECCCC-----cHHHHHHHHHcCCcEEEEcC---CHHHHH
Confidence 34666777777899999999766 457888899999999999874 25678889999999988763 555565
Q ss_pred Hhhc-cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 183 CVLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 183 ~~l~-~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
...+ .+|+|.+.+.++|. .|+. ..++.+.++++.. ++++.++|||+ .+++.+++++|||.+.+||+++.
T Consensus 139 ~a~~~GaD~i~v~g~~~GG~~G~~---~~~~ll~~i~~~~-----~iPviaaGGI~~~~dv~~al~~GA~gV~vGs~~~~ 210 (326)
T 3bo9_A 139 MVERAGADAVIAEGMESGGHIGEV---TTFVLVNKVSRSV-----NIPVIAAGGIADGRGMAAAFALGAEAVQMGTRFVA 210 (326)
T ss_dssp HHHHTTCSCEEEECTTSSEECCSS---CHHHHHHHHHHHC-----SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHT
T ss_pred HHHHcCCCEEEEECCCCCccCCCc---cHHHHHHHHHHHc-----CCCEEEECCCCCHHHHHHHHHhCCCEEEechHHHc
Confidence 5554 49999998766543 2433 2455556555442 47899999998 99999999999999999999986
Q ss_pred CC
Q 023494 260 AK 261 (281)
Q Consensus 260 a~ 261 (281)
.+
T Consensus 211 ~~ 212 (326)
T 3bo9_A 211 SV 212 (326)
T ss_dssp BS
T ss_pred Cc
Confidence 53
|
| >4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A | Back alignment and structure |
|---|
Probab=99.19 E-value=2.4e-11 Score=111.82 Aligned_cols=193 Identities=16% Similarity=0.221 Sum_probs=123.4
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEee-----eCcccc--cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVM-----DGRFVP--NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDIm-----DG~fvp--n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
.|+.+. +..+..+++|++-+ -+. |-.|-. ...-.++.++++|+..++|+.+-..+.. ...++.+.++||
T Consensus 26 ~d~~~~-e~A~~ye~~GA~~l--svLe~~~~Di~~~~g~~R~~~~~~i~~i~~~v~iPvl~k~~i~~-ide~qil~aaGA 101 (297)
T 4adt_A 26 MDVKNV-EQAKIAEKAGAIGV--MILENIPSELRNTDGVARSVDPLKIEEIRKCISINVLAKVRIGH-FVEAQILEELKV 101 (297)
T ss_dssp EEESSH-HHHHHHHHHTCSEE--EECCCCC-----CCCCCCCCCHHHHHHHHTTCCSEEEEEEETTC-HHHHHHHHHTTC
T ss_pred cCCCcH-HHHHHHHHcCCCEE--EEecCCCCcchhcCCcccCCCHHHHHHHHHhcCCCEEEeccCCc-HHHHHHHHHcCC
Confidence 466666 44688999999975 444 222211 1122599999999988899988766655 335666778999
Q ss_pred CEEEEcccccccccHHHHHHHHHH--cCCcEEEEECCCCCHHHHHHh-hccCCEEEEEeecCCCCCC-------------
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKD--LGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQ------------- 203 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~--~G~k~Glai~p~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ------------- 203 (281)
|.|. ..+ ..++.++++.+++ .|..+.+.. . ..++.... ...+|+|.+-.. .| +|.
T Consensus 102 D~Id-~s~---~~~~~~li~~i~~~~~g~~vvv~v--~-~~~Ea~~a~~~Gad~I~v~g~-~g-TG~~~~~v~h~~~~~~ 172 (297)
T 4adt_A 102 DMLD-ESE---VLTMADEYNHINKHKFKTPFVCGC--T-NLGEALRRISEGASMIRTKGE-AG-TGNIIEAIKHIRTVNN 172 (297)
T ss_dssp SEEE-EET---TSCCSCSSCCCCGGGCSSCEEEEE--S-SHHHHHHHHHHTCSEEEECCC-TT-SCCCHHHHHHHHHHHH
T ss_pred CEEE-cCC---CCCHHHHHHHHHhcCCCCeEEEEe--C-CHHHHHHHHhCCCCEEEECCC-cC-CCchHHHHHHHHHhhh
Confidence 9992 222 1233445666676 455555444 3 34333333 345898865321 22 231
Q ss_pred --------------cc---chhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHH
Q 023494 204 --------------SF---IESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 204 --------------~f---~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~ 265 (281)
.| ....++.++++++..+ ..+.+.++||| +++++..+.++|||.+++||+||+++||.+
T Consensus 173 eir~l~~~~~d~L~t~~~~~~~~~~ll~~i~~~~~---iPVivvA~GGI~t~~dv~~~~~~GAdgVlVGsai~~a~dp~~ 249 (297)
T 4adt_A 173 EIKYLCSLDESEVYNFAKKLRAPIDLILLTRKLKR---LPVVNFAAGGIATPADAAMCMQLGMDGVFVGSGIFESENPQK 249 (297)
T ss_dssp HHHHHHHSCTTTHHHHHHHHTCCHHHHHHHHHHTS---CSSEEEEESCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHH
T ss_pred hhhhhccccccccccccccCCCCHHHHHHHHHhcC---CCeEEEecCCCCCHHHHHHHHHcCCCEEEEhHHHHcCCCHHH
Confidence 01 0122455556555432 12223479999 899999999999999999999999999999
Q ss_pred HHHHHHHhcC
Q 023494 266 AIKGIKTSKR 275 (281)
Q Consensus 266 ~~~~l~~~~~ 275 (281)
.+++|++.++
T Consensus 250 ~~~~l~~ai~ 259 (297)
T 4adt_A 250 MASSIVMAVS 259 (297)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999987553
|
| >3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.17 E-value=1.6e-10 Score=100.67 Aligned_cols=163 Identities=9% Similarity=0.147 Sum_probs=104.0
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
.+.++.+.++|++++++...+. + ...-.+.++.+.+. ..+-+.++| .++.+.++|+|+|++..+.. +
T Consensus 16 ~~~~~~a~~~Gv~~v~lr~k~~---~-~~~~~~~i~~l~~~----~~~~livnd---~~~~A~~~gadgvhl~~~~~--~ 82 (210)
T 3ceu_A 16 DKIITALFEEGLDILHLRKPET---P-AMYSERLLTLIPEK----YHRRIVTHE---HFYLKEEFNLMGIHLNARNP--S 82 (210)
T ss_dssp HHHHHHHHHTTCCEEEECCSSC---C-HHHHHHHHHHSCGG----GGGGEEESS---CTTHHHHTTCSEEECCSSSC--S
T ss_pred HHHHHHHHHCCCCEEEEccCCC---C-HHHHHHHHHHHHHH----hCCeEEEeC---CHHHHHHcCCCEEEECcccc--c
Confidence 3778888899999999963321 1 00011234444332 234445565 55778899999999987742 1
Q ss_pred cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCC--C--CccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG--G--QSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~--G--Q~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.. ...+..+|+..+ |+-| +......+|||.+-++.|..+ | ..+ .++.++++++... .+++
T Consensus 83 ~~-------~~~~~~ig~s~~--t~~e-~~~A~~GaDyv~~g~vf~t~sk~~~~~~~---g~~~l~~~~~~~~---~~iP 146 (210)
T 3ceu_A 83 EP-------HDYAGHVSCSCH--SVEE-VKNRKHFYDYVFMSPIYDSISKVNYYSTY---TAEELREAQKAKI---IDSK 146 (210)
T ss_dssp CC-------TTCCSEEEEEEC--SHHH-HHTTGGGSSEEEECCCC---------CCC---CHHHHHHHHHTTC---SSTT
T ss_pred cc-------cccCCEEEEecC--CHHH-HHHHhhCCCEEEECCcCCCCCCCCCCCCC---CHHHHHHHHHhcC---CCCC
Confidence 11 113677787775 3333 333225699999876665432 1 223 3444555554310 2468
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHH
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~ 264 (281)
+..-|||+++|+.+++++||+.+.+||+|++++||.
T Consensus 147 viaiGGI~~~nv~~~~~~Ga~gVav~s~i~~~~d~~ 182 (210)
T 3ceu_A 147 VMALGGINEDNLLEIKDFGFGGAVVLGDLWNKFDAC 182 (210)
T ss_dssp EEEESSCCTTTHHHHHHTTCSEEEESHHHHTTCCTT
T ss_pred EEEECCCCHHHHHHHHHhCCCEEEEhHHhHcCCCHH
Confidence 889999999999999999999999999999988885
|
| >2nv1_A Pyridoxal biosynthesis lyase PDXS; (beta/alpha)8-barrel, synthase; 2.08A {Bacillus subtilis} PDB: 2nv2_A* 1znn_A | Back alignment and structure |
|---|
Probab=99.16 E-value=9.2e-11 Score=107.87 Aligned_cols=191 Identities=16% Similarity=0.177 Sum_probs=119.9
Q ss_pred HHHHHHHHHcCCCeEEE-E---eeeCcccc-cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 73 GEQVKAVELAGCDWIHV-D---VMDGRFVP-NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHi-D---ImDG~fvp-n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.+.++.++++|+++||+ + ..+..+-- ...-.++.++.+++.++.|+.+...+.. ...++.+.++|||.|. ..+
T Consensus 31 ~~~a~~~~~~Ga~~I~~l~p~~~~~~~~~G~~~~~~~~~i~~I~~~~~iPv~~k~r~g~-~~~~~~~~a~GAd~V~-~~~ 108 (305)
T 2nv1_A 31 AEQAKIAEEAGAVAVMALERVPADIRAAGGVARMADPTIVEEVMNAVSIPVMAKARIGH-IVEARVLEAMGVDYID-ESE 108 (305)
T ss_dssp HHHHHHHHHTTCSEEEECCC-------CCCCCCCCCHHHHHHHHHHCSSCEEEEECTTC-HHHHHHHHHHTCSEEE-ECT
T ss_pred HHHHHHHHHcCCCEEEEcCCCcchhhhccCcccCCCHHHHHHHHHhCCCCEEecccccc-hHHHHHHHHCCCCEEE-Eec
Confidence 46677888899999953 3 01111110 0112478899988777788876554432 2356777889999997 333
Q ss_pred ccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC-----------------------CCCc
Q 023494 148 QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF-----------------------GGQS 204 (281)
Q Consensus 148 a~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~-----------------------~GQ~ 204 (281)
..+..++.+.++ .+++|+.+++... +.-+..+.+-..+|+|.+-+ +.|. .+..
T Consensus 109 ~l~~~~~~~~i~-~~~~g~~v~~~~~--~~~e~~~a~~~Gad~V~~~G-~~g~g~~~~~~~h~rt~~~~i~~l~gi~~~~ 184 (305)
T 2nv1_A 109 VLTPADEEFHLN-KNEYTVPFVCGCR--DLGEATRRIAEGASMLRTKG-EPGTGNIVEAVRHMRKVNAQVRKVVAMSEDE 184 (305)
T ss_dssp TSCCSCSSCCCC-GGGCSSCEEEEES--SHHHHHHHHHTTCSEEEECC-CTTSCCTHHHHHHHHHHHHHHHHHHHSCGGG
T ss_pred cCCHHHHHHHHH-HhccCCcEEEEeC--CHHHHHHHHHCCCCEEEecc-ccCccchHHHHhhhhhhhccchhhccccchh
Confidence 222233333444 4567888888774 33343333333589887632 2221 1111
Q ss_pred c------chhHHHHHHHHHHHhhhcCCCCeEE--EecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 205 F------IESQVKKISDLRRMCLEKGVNPWIE--VDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 205 f------~~~~l~kI~~lr~l~~~~~~~~~I~--VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
. .+..++.++++++.. ++++. +.||| +++++.++.++|||.+++||++++++||.+.++++++.+
T Consensus 185 ~~~~~~~~~~~~~~i~~i~~~~-----~iPvi~~a~GGI~~~~d~~~~~~~GadgV~vGsai~~~~~p~~~~~~l~~~~ 258 (305)
T 2nv1_A 185 LMTEAKNLGAPYELLLQIKKDG-----KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSDNPAKFAKAIVEAT 258 (305)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHT-----SCSSCEEBCSCCCSHHHHHHHHHTTCSCEEECGGGGGSSCHHHHHHHHHHHH
T ss_pred hhcccccccccHHHHHHHHHhc-----CCCEEEEeccCCCCHHHHHHHHHcCCCEEEEcHHHHcCCCHHHHHHHHHHHH
Confidence 0 122345555555532 35665 89999 899999999999999999999999999998888888754
|
| >3g3d_A UMP synthase, uridine 5'-monophosphate synthase; C-terminal domain, orotidine 5'-monophosphate decarboxylase, human, 5-fluoro-6-azido-UMP; HET: 5FU; 1.70A {Homo sapiens} PDB: 3bvj_A* 3mw7_A* 4hib_A* 4hkp_A* 2p1f_A 2eaw_A 3bgg_A* 3bgj_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.7e-09 Score=99.88 Aligned_cols=180 Identities=14% Similarity=0.103 Sum_probs=117.0
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+-++++|+.+.++.++.+++.+ +.++.+ | .+.+ .+|++.++.|++. .++++.+|+|..|....+....
T Consensus 85 ~LiVALD~~~~~~al~l~~~l~~~v~~vKv----G--~~l~~~~G~~~v~~L~~~a~~~g~~IflDlK~~DIpnTv~~a~ 158 (312)
T 3g3d_A 85 NLCLSADVSLARELLQLADALGPSICMLKT----H--VDILNDFTLDVMKELITLAKCHEFLIFEDRKFADIGNTVKKQY 158 (312)
T ss_dssp CEEEECCCSCHHHHHHHHHHHGGGCSEEEE----C--GGGCTTCCHHHHHHHHHHHHHHTCEEEEEEEECSCHHHHHHHH
T ss_pred CEEEEeCCCCHHHHHHHHHHhCCCceEEEE----c--HHHHHHhCHHHHHHHHHHHhhCCCEEEEECcccccHHHHHHHH
Confidence 4478899999999888877653 455555 3 2433 8999999999873 5889999999999988776532
Q ss_pred H-------cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCC-----H---HHHHHhhcc----CCEEEEEee
Q 023494 136 K-------AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-----L---SAIECVLDV----VDLVLIMSV 196 (281)
Q Consensus 136 ~-------aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-----i---e~~~~~l~~----vD~IlvmsV 196 (281)
+ .|+|++|+|.-.. .+.++.+++..+..++.+-+....+.+ . +....+... +|-|.. .
T Consensus 159 ~~a~~~~a~~aD~vTVHa~~G-~~~m~aa~e~~~~~~~gV~vLtsms~~g~l~~~~~~~~V~~lA~~~~~gldGvVc--s 235 (312)
T 3g3d_A 159 EGGIFKIASWADLVNAHVVPG-SGVVKGLQEVGLPLHRGCLLIAEMSSTGSLATGDYTRAAVRMAEEHSEFVVGFIS--G 235 (312)
T ss_dssp HCTTTCHHHHCSEEEEESTTC-THHHHHHHHHHTTTTCEEEEECCCSSTTCCCCHHHHHHHHHHHHHTTTTEEEEEC--S
T ss_pred HHHHHhhhccCCEEEEccCCC-HHHHHHHHHhhhhcCCeEEEEEecCCccccccCCHHHHHHHHHHhhhCCCCeEEe--C
Confidence 1 3699999998753 444555555433333333333322211 0 111111111 111110 0
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHH-HcCCcEEEEcccccCCCCHH
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVI-EAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~-~aGAD~~VvGSaIf~a~dp~ 264 (281)
+ +. ..+.++ +.|..||++. |..+++ ++|+|.+||||.|++++||.
T Consensus 236 --~--------e~------------~~~~df-l~vTPGIrp~~~~~~~g~qv~TP~~Ai~~~GaD~iVVGRpIt~A~dP~ 292 (312)
T 3g3d_A 236 --S--------RV------------SMKPEF-LHLTPGVQLEAGGDNLGQQYNSPQEVIGKRGSDIIIVGRGIISAADRL 292 (312)
T ss_dssp --S--------CC------------CCCTTS-EEEECSBCSSSEECTTSCEEBCHHHHHHTTCCSEEEESHHHHTSSSHH
T ss_pred --h--------hh------------ccCCCe-EEEcCCcCCCcCCCCcCCcccCHHHHHHhCCCCEEEEChhhcCCCCHH
Confidence 0 00 012345 4588999864 477888 99999999999999999999
Q ss_pred HHHHHHHHh
Q 023494 265 EAIKGIKTS 273 (281)
Q Consensus 265 ~~~~~l~~~ 273 (281)
++++++++.
T Consensus 293 ~aa~~i~~~ 301 (312)
T 3g3d_A 293 EAAEMYRKA 301 (312)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999874
|
| >4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.6e-09 Score=96.41 Aligned_cols=184 Identities=13% Similarity=0.106 Sum_probs=133.4
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-.-|.....+..+.+.++|++++++.... | -+.+.|+++++. ++..+-+.- |-+ .+.++.+.++
T Consensus 35 ~vv~Vir~~~~~~a~~~a~al~~gGi~~iEvt~~t----~---~a~e~I~~l~~~~~~~~iGaGT-Vlt-~~~a~~Ai~A 105 (232)
T 4e38_A 35 KVIPVIAIDNAEDIIPLGKVLAENGLPAAEITFRS----D---AAVEAIRLLRQAQPEMLIGAGT-ILN-GEQALAAKEA 105 (232)
T ss_dssp CEEEEECCSSGGGHHHHHHHHHHTTCCEEEEETTS----T---THHHHHHHHHHHCTTCEEEEEC-CCS-HHHHHHHHHH
T ss_pred CEEEEEEcCCHHHHHHHHHHHHHCCCCEEEEeCCC----C---CHHHHHHHHHHhCCCCEEeECC-cCC-HHHHHHHHHc
Confidence 58888888899999999999999999999995332 2 356788888874 555455443 344 3478899999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
||++|...... .++++.++++|+.+..-+. |+-|....+-..+|+|-+ .|+- .. ..++.|+.++
T Consensus 106 GA~fIvsP~~~------~~vi~~~~~~gi~~ipGv~--TptEi~~A~~~Gad~vK~---FPa~---~~--gG~~~lkal~ 169 (232)
T 4e38_A 106 GATFVVSPGFN------PNTVRACQEIGIDIVPGVN--NPSTVEAALEMGLTTLKF---FPAE---AS--GGISMVKSLV 169 (232)
T ss_dssp TCSEEECSSCC------HHHHHHHHHHTCEEECEEC--SHHHHHHHHHTTCCEEEE---CSTT---TT--THHHHHHHHH
T ss_pred CCCEEEeCCCC------HHHHHHHHHcCCCEEcCCC--CHHHHHHHHHcCCCEEEE---CcCc---cc--cCHHHHHHHH
Confidence 99999876542 3578889999988744443 566656555556999965 5641 11 1345666666
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC-----CCCHHHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-----AKDYAEAIKGIK 271 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~-----a~dp~~~~~~l~ 271 (281)
.-++ ++++...|||+++|+.+++++|+..+|+||.++. +.|+++..+..+
T Consensus 170 ~p~p----~ip~~ptGGI~~~n~~~~l~aGa~~~vgGs~l~~~~~i~~~~~~~i~~~a~ 224 (232)
T 4e38_A 170 GPYG----DIRLMPTGGITPSNIDNYLAIPQVLACGGTWMVDKKLVTNGEWDEIARLTR 224 (232)
T ss_dssp TTCT----TCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHHHHH
T ss_pred HHhc----CCCeeeEcCCCHHHHHHHHHCCCeEEEECchhcChHHhhcCCHHHHHHHHH
Confidence 5443 4789999999999999999999999999999996 356654444333
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=5.2e-11 Score=106.12 Aligned_cols=172 Identities=15% Similarity=0.198 Sum_probs=115.1
Q ss_pred EeccCcc--CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 64 ILSANFA--KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 64 ila~D~~--~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+.++|+. ...+.++.+.++|+|.|++.+-+|.. ..--.++++++|+ ++.|+.. |...+..+ ++|+|.
T Consensus 12 it~gDP~~~~t~~~~~~l~~~GaD~IelG~S~g~t---~~~~~~~v~~ir~-~~~Pivl--~~y~~n~i-----~~gvDg 80 (234)
T 2f6u_A 12 ITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVT---YEKARTLIEKVSQ-YGLPIVV--EPSDPSNV-----VYDVDY 80 (234)
T ss_dssp EEEECTTSCCCHHHHHHHHTTTCSEEEECCCTTCC---HHHHHHHHHHHTT-SCCCEEE--CCSSCCCC-----CCCSSE
T ss_pred EEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCC---HHHHHHHHHHhcC-CCCCEEE--ecCCcchh-----hcCCCE
Confidence 4556663 34567899999999999997755522 2224578899998 7888886 77553212 789999
Q ss_pred EEEccccc-ccccHH--HHHHHH-------HHcC-----CcEEE----EECCCC------------CHHHHHHhhccC--
Q 023494 142 VSVHCEQS-STIHLH--RTLNQI-------KDLG-----AKAGV----VLNPAT------------SLSAIECVLDVV-- 188 (281)
Q Consensus 142 Itvh~Ea~-~~~~i~--~~l~~i-------k~~G-----~k~Gl----ai~p~t------------~ie~~~~~l~~v-- 188 (281)
+.+..--. ...+.. ...+.+ +++| +..-. .++|++ +.++++.+....
T Consensus 81 ~iipdLp~ee~~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~~P~~~~~rl~~g~~~~~~e~~~~~a~~g~~ 160 (234)
T 2f6u_A 81 LFVPTVLNSADGDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVLNPDSAVARVTKALCNIDKELAASYALVGEK 160 (234)
T ss_dssp EEEEEETTBSBGGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHH
T ss_pred EEEcccCCCCCHHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEECCCCceEEeecCCCCCCHHHHHHHHHhhhh
Confidence 99985421 011221 111333 7788 76654 788887 556677766542
Q ss_pred ----CEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 189 ----DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 189 ----D~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+|.+-+ -|.. ...+.|+++++... +.++.|.|||+ +|+++++.+ |||.+|+||++.+
T Consensus 161 ~l~~~~Vyl~~--~G~~------~~~~~i~~i~~~~~----~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGSa~v~ 223 (234)
T 2f6u_A 161 LFNLPIIYIEY--SGTY------GNPELVAEVKKVLD----KARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE 223 (234)
T ss_dssp TTCCSEEEEEC--TTSC------CCHHHHHHHHHHCS----SSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred hcCCCEEEEeC--CCCc------chHHHHHHHHHhCC----CCCEEEEecCCCHHHHHHHHh-CCCEEEEChHHHh
Confidence 5565433 3432 23455666666531 36899999999 899999988 9999999999985
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.14 E-value=6.3e-10 Score=99.44 Aligned_cols=187 Identities=19% Similarity=0.129 Sum_probs=113.1
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+++.|++.||+-=++..+. ......+.++.+++.++.|+.+.--+.++. .++.+.++|||.+.+.....
T Consensus 31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~-~~g~~~~~i~~i~~~~~iPvi~~ggi~~~~-~i~~~~~~Gad~v~lg~~~~- 107 (266)
T 2w6r_A 31 LLRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDTEMIRFVRPLTTLPIIASGGAGKME-HFLEAFLAGADKALAASVFH- 107 (266)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTSSC-SSCCCHHHHHHHGGGCCSCEEEESCCCSTH-HHHHHHHHTCSEEECCCCC--
T ss_pred CHHHHHHHHHHCCCCEEEEEecCcccC-CCcccHHHHHHHHHhcCCCEEEECCCCCHH-HHHHHHHcCCcHhhhhHHHH-
Confidence 567778889999999999832222111 122346889999887788888755556655 45677789999999987642
Q ss_pred cc--cHHHHHHHHHHcC--C-c--EEEEEC--C---------------CCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc
Q 023494 151 TI--HLHRTLNQIKDLG--A-K--AGVVLN--P---------------ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 151 ~~--~i~~~l~~ik~~G--~-k--~Glai~--p---------------~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f 205 (281)
.. ++..+.+.++..| . + +++... . .++.+.++.+.. .++.|++.++.. .|..+
T Consensus 108 ~~~~~~~~~~~~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~--~g~~~ 185 (266)
T 2w6r_A 108 FREIDMRELKEYLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILLTSIDR--DGTKS 185 (266)
T ss_dssp -----CHHHHHHCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTT--TTTCS
T ss_pred hCCCCHHHHHHHHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEEEeecC--CCCcC
Confidence 11 4444555555555 2 3 344331 1 123454455443 388998865543 22221
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCC-HHHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD-YAEAIK 268 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~d-p~~~~~ 268 (281)
-+ .++.++++++.. ++++.+.|||+ ++++.++.++|||.+++||+|++.++ +.+..+
T Consensus 186 g~-~~~~i~~l~~~~-----~ipvia~GGI~~~ed~~~~~~~Gadgv~vgsal~~~~~~~~~~~~ 244 (266)
T 2w6r_A 186 GY-DTEMIRFVRPLT-----TLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDMRELKE 244 (266)
T ss_dssp CC-CHHHHHHHGGGC-----CSCEEEESCCCSHHHHHHHHHHTCSEEEESTTTC-----------
T ss_pred CC-CHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHHHcCCHHHHccHHHHcCCCCHHHHHH
Confidence 11 255566555432 57899999999 69999999999999999999998764 443333
|
| >1i4n_A Indole-3-glycerol phosphate synthase; thermostable TIM-barrel protein, salt bridges, electrostatic interactions, lyase; 2.50A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1j5t_A | Back alignment and structure |
|---|
Probab=99.12 E-value=5e-09 Score=94.21 Aligned_cols=195 Identities=17% Similarity=0.252 Sum_probs=136.4
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-||| .+.-|+ +..+..+.++++ +.-|-+ .-|..|. .=+.+-++.+|+.+++|+...=.+-||.. +..+..+
T Consensus 50 aSPSkG~i~~~~-~~~~iA~~y~~~-A~~IsV-lTd~~~F---~gs~~dL~~ir~~v~lPvLrKDfi~~~~q-i~ea~~~ 122 (251)
T 1i4n_A 50 ASPSAGDINADA-SLEDFIRMYDEL-ADAISI-LTEKHYF---KGDPAFVRAARNLTCRPILAKDFYIDTVQ-VKLASSV 122 (251)
T ss_dssp BCSSSCBSCTTC-CHHHHHHHHHHH-CSEEEE-ECCCSSS---CCCTHHHHHHHTTCCSCEEEECCCCSTHH-HHHHHHT
T ss_pred CCCCCCccCCCC-CHHHHHHHHHHh-CCceEE-Eeccccc---CCCHHHHHHHHHhCCCCEEEeeCCCCHHH-HHHHHHc
Confidence 4677 344443 555666666666 665533 3455443 33678899999888888876555566654 5558999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
|||.|.+-....+..++.++++.+++.|+.+-+.++ ..++++..+. .+|+|.+- +.+..+ |... ++...+
T Consensus 123 GAD~ilLi~a~l~~~~l~~l~~~a~~lGl~~lvEv~---~~eE~~~A~~l~g~~iIGin--nr~l~t--~~~d-~~~~~~ 194 (251)
T 1i4n_A 123 GADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH---SREDLEKVFSVIRPKIIGIN--TRDLDT--FEIK-KNVLWE 194 (251)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC---SHHHHHHHHTTCCCSEEEEE--CBCTTT--CCBC-TTHHHH
T ss_pred CCCEEEEecccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHhcCCCCEEEEe--Cccccc--CCCC-HHHHHH
Confidence 999999988764446799999999999999999987 4444554443 47877543 234322 3222 334444
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.+.++. +..+..-|||+ ++++..+.++ +|.|++|++|.+++||.+.+++|...
T Consensus 195 l~~~ip~---~~~vIaEsGI~t~edv~~~~~~-a~avLVG~aimr~~d~~~~~~~l~~~ 249 (251)
T 1i4n_A 195 LLPLVPD---DTVVVAESGIKDPRELKDLRGK-VNAVLVGTSIMKAENPRRFLEEMRAW 249 (251)
T ss_dssp HGGGSCT---TSEEEEESCCCCGGGHHHHTTT-CSEEEECHHHHHCSSHHHHHHHHHHH
T ss_pred HHHhCCC---CCEEEEeCCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHhC
Confidence 4444432 34566699997 9999999999 99999999999999999999988764
|
| >2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-10 Score=102.94 Aligned_cols=141 Identities=19% Similarity=0.274 Sum_probs=106.4
Q ss_pred HHHHHcCcCCCCCeeEEEEecChh--hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~--~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~ 182 (281)
+.++.+|+.++.|+.+.+++.+|. +.++.+.++|+|.|.+|... +.++++.+|+.|+++++.+ +..+..+
T Consensus 53 ~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~~g~-----p~~~i~~l~~~g~~v~~~v---~~~~~a~ 124 (332)
T 2z6i_A 53 ANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTGAGN-----PSKYMERFHEAGIIVIPVV---PSVALAK 124 (332)
T ss_dssp HHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEECSSC-----GGGTHHHHHHTTCEEEEEE---SSHHHHH
T ss_pred HHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEECCCC-----hHHHHHHHHHcCCeEEEEe---CCHHHHH
Confidence 446666776778999999997764 56788899999999999864 2356788888899998876 3555565
Q ss_pred Hhhc-cCCEEEEEeecCCC-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 183 CVLD-VVDLVLIMSVNPGF-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 183 ~~l~-~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.+ .+|+|.+.+.++|. .|+. ..++.++++++.. ++++.++|||+ ++++..+++.|||.+.+||+++.
T Consensus 125 ~~~~~GaD~i~v~g~~~GG~~g~~---~~~~ll~~i~~~~-----~iPViaaGGI~~~~~~~~al~~GAdgV~vGs~~l~ 196 (332)
T 2z6i_A 125 RMEKIGADAVIAEGMEAGGHIGKL---TTMTLVRQVATAI-----SIPVIAAGGIADGEGAAAGFMLGAEAVQVGTRFVV 196 (332)
T ss_dssp HHHHTTCSCEEEECTTSSEECCSS---CHHHHHHHHHHHC-----SSCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHT
T ss_pred HHHHcCCCEEEEECCCCCCCCCCc---cHHHHHHHHHHhc-----CCCEEEECCCCCHHHHHHHHHcCCCEEEecHHHhc
Confidence 5544 38999987655442 2433 3445566665543 47899999998 99999999999999999999886
Q ss_pred CC
Q 023494 260 AK 261 (281)
Q Consensus 260 a~ 261 (281)
.+
T Consensus 197 ~~ 198 (332)
T 2z6i_A 197 AK 198 (332)
T ss_dssp BT
T ss_pred Cc
Confidence 54
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=99.09 E-value=7.9e-10 Score=98.43 Aligned_cols=174 Identities=20% Similarity=0.226 Sum_probs=118.1
Q ss_pred eccCccC--HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 65 LSANFAK--LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 65 la~D~~~--l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
..+|+.. -.+.++.+.+.|.|.|.+..-+|....+ -.++++++|+ ++.|+.. |..||..+ ..|+|.+
T Consensus 16 ~~~DPdk~~~~~~l~~~~~~GtDaI~vGgs~gvt~~~---~~~~v~~ik~-~~~Piil--~p~~~~~~-----~~gaD~i 84 (235)
T 3w01_A 16 FKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDN---VIHLMSKIRR-YPLPLVL--EISNIESV-----MPGFDFY 84 (235)
T ss_dssp EEECTTSCCCHHHHHHHHTSSCSEEEECCSSCCCHHH---HHHHHHHHTT-SCSCEEE--ECCCSTTC-----CTTCSEE
T ss_pred EeECCCCcCCHHHHHHHHHcCCCEEEECCcCCcCHHH---HHHHHHHhcC-cCCCEEE--ecCCHHHh-----hcCCCEE
Confidence 3456643 3467777889999999997655532222 3578899998 7788775 99998765 3599999
Q ss_pred EEcccccc-ccc--HHHHHHHHHHcCC-----cEEE----EECCCCCHHH---------HHHhhcc---------CCEEE
Q 023494 143 SVHCEQSS-TIH--LHRTLNQIKDLGA-----KAGV----VLNPATSLSA---------IECVLDV---------VDLVL 192 (281)
Q Consensus 143 tvh~Ea~~-~~~--i~~~l~~ik~~G~-----k~Gl----ai~p~t~ie~---------~~~~l~~---------vD~Il 192 (281)
.|+.--.+ ..+ +..-.+.++++|. ++-. .++|+++.++ .+..... ..+|.
T Consensus 85 l~pslln~~~~~~i~g~~~~a~~~~gl~~~~~e~i~~gYivv~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~~vY 164 (235)
T 3w01_A 85 FVPTVLNSTDVAFHNGTLLEALKTYGHSIDFEEVIFEGYVVCNADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVMY 164 (235)
T ss_dssp EEEEETTBSSGGGTTHHHHHHHHHHGGGCCGGGEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EEccccCCCCcchhhhHHHHHHHHcCCCCcccceeeeeEEEECCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99843211 111 2334567899998 6654 7999988774 3333222 25665
Q ss_pred EEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHH
Q 023494 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 193 vmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~ 264 (281)
+-+ .|..| . .+.|+++|+... +.++.|.|||+ +|+++++.+ |||.+|+||+|++ ||+
T Consensus 165 ~e~--sG~~g---~---~~~v~~ir~~~~----~~pv~vGfGI~~~e~a~~~~~-gAD~VVVGSai~~--~~~ 222 (235)
T 3w01_A 165 IEY--SGIYG---D---VSKVQAVSEHLT----ETQLFYGGGISSEQQATEMAA-IADTIIVGDIIYK--DIK 222 (235)
T ss_dssp EEC--TTSCC---C---HHHHHHHHTTCS----SSEEEEESCCCSHHHHHHHHT-TSSEEEECTHHHH--CHH
T ss_pred Eec--CCCcC---C---HHHHHHHHHhcC----CCCEEEECCcCCHHHHHHHHc-CCCEEEECCceec--CHH
Confidence 533 56544 2 344455554431 46899999998 899999887 9999999999997 554
|
| >3gdm_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, K93R mutant, lyase, phosphoprotein; 1.60A {Saccharomyces cerevisiae} SCOP: c.1.2.3 PDB: 3gdl_A* 3gdk_A* 3gdt_A* 3gdr_A* 1dqw_A 1dqx_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=1.1e-08 Score=92.74 Aligned_cols=186 Identities=13% Similarity=0.135 Sum_probs=120.0
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHH-HHHHcCcC---CCCCeeEEEEecChhhHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPL-VVDALRPV---TDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~-~I~~ir~~---t~~~idaHLmv~dp~~~i~~~ 134 (281)
+-++++|+.+.++.++.+++.+ +.++.+ | + +.+ .+|++ .++.|++. .++++.+|+|..|....+...
T Consensus 31 ~LiVALD~~~~~~al~l~~~l~~~v~~~Kv----G-~-~l~~~~G~~~~v~~L~~l~~~~g~~IflDlK~~DIpnTv~~~ 104 (267)
T 3gdm_A 31 NLCASLDVRTTKELLELVEALGPKICLLKT----H-V-DILTDFSMEGTVKPLKALSAKYNFLLFEDRRFADIGNTVKLQ 104 (267)
T ss_dssp CEEEECCCSCHHHHHHHHHHHGGGCSEEEE----C-G-GGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHH
T ss_pred CEEEEeCcCCHHHHHHHHHHhCCcCcEEEE----C-H-HHHHhcCHHHHHHHHHHHHhhcCCeEEEEeccccchHHHHHH
Confidence 4467899999998888877653 455554 3 2 333 78999 88888753 478999999999998876642
Q ss_pred H-------HcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCC--H------HHHHHhhccC-CEEEEEe
Q 023494 135 I-------KAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATS--L------SAIECVLDVV-DLVLIMS 195 (281)
Q Consensus 135 ~-------~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~--i------e~~~~~l~~v-D~Ilvms 195 (281)
. ..++|++|+|.-.. .+.+..+++.+++. +..+-+....+.+ + +....+.... +. +.+
T Consensus 105 y~~a~~~~~~~ad~vTVH~~~G-~~~~~aa~~~a~~~~~~~~~lllla~mss~~~l~~~~~~~~v~~~A~~a~~g--~dG 181 (267)
T 3gdm_A 105 YSAGVYRIAEWADITNAHGVVG-PGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLATGEYTKGTVDIAKSDKDF--VIG 181 (267)
T ss_dssp HHSTTTCHHHHCSEEEEEGGGC-THHHHHHHHHHHHHCCSCCEEEEECSCCSTTCCCCHHHHHHHHHHHTTCTTT--EEE
T ss_pred HHHHHHHHHhhCCEEEEeccCC-HHHHHHHHHHHHhhcccCCCeEEEEEcCCccccccCCHHHHHHHHHHHHhcC--CCe
Confidence 1 22489999998763 55677777777765 4333332221111 1 1222222221 11 111
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccC-CCCH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFG-AKDY 263 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~-a~dp 263 (281)
+-- ..+ .+. + ..+.++. .|..||+++ |..+.+++|+|.+|||+.|++ ++||
T Consensus 182 vV~--s~~--~~~--------~----~~g~~f~-~vTPGIr~~~~g~~~gdQ~rTP~~Ai~~GaD~iVVGRpI~~~a~dP 244 (267)
T 3gdm_A 182 FIA--QRD--MGG--------R----DEGYDWL-IMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDA 244 (267)
T ss_dssp EEC--SSC--CCC--------G----GGTCCCE-EEECSEECCCTTCTTGGGSEEHHHHHHTTCSEEEECGGGTSTTCCH
T ss_pred EEe--Ccc--chh--------h----ccCCCCE-EECCCcCCCcCCCccccCCCCHHHHHHcCCCEEEEChhhccCCCCH
Confidence 110 011 111 1 1233454 478999863 788999999999999999999 9999
Q ss_pred HHHHHHHHHh
Q 023494 264 AEAIKGIKTS 273 (281)
Q Consensus 264 ~~~~~~l~~~ 273 (281)
.++++++++.
T Consensus 245 ~~aa~~i~~~ 254 (267)
T 3gdm_A 245 KVEGERYRKA 254 (267)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999874
|
| >3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.2e-09 Score=101.03 Aligned_cols=121 Identities=17% Similarity=0.246 Sum_probs=87.1
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhh-ccCCEEEEEeecCCCCCCc--c
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVL-DVVDLVLIMSVNPGFGGQS--F 205 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~--f 205 (281)
.+++.+.+.|+|.|++|.... ..+.++.+++.|+++++.++ ..+...... ..+|+|.+-+ ++++|+. +
T Consensus 113 ~~~~~~~~~g~~~V~~~~g~~----~~~~i~~~~~~g~~v~~~v~---t~~~a~~a~~~GaD~i~v~g--~~~GGh~g~~ 183 (369)
T 3bw2_A 113 AKLAVLLDDPVPVVSFHFGVP----DREVIARLRRAGTLTLVTAT---TPEEARAVEAAGADAVIAQG--VEAGGHQGTH 183 (369)
T ss_dssp HHHHHHHHSCCSEEEEESSCC----CHHHHHHHHHTTCEEEEEES---SHHHHHHHHHTTCSEEEEEC--TTCSEECCCS
T ss_pred HHHHHHHhcCCCEEEEeCCCC----cHHHHHHHHHCCCeEEEECC---CHHHHHHHHHcCCCEEEEeC--CCcCCcCCCc
Confidence 356778899999999998752 24678889999999998774 344444433 3599998743 2232211 1
Q ss_pred ch---------hHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCH
Q 023494 206 IE---------SQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 206 ~~---------~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp 263 (281)
.+ ..++.++++++.. ++++.++||| +++++..++++|||.+.+||+++..+++
T Consensus 184 ~~~~~~~~~~~~~~~~l~~i~~~~-----~iPViaaGGI~~~~~~~~~l~~GAd~V~vGs~~~~~~e~ 246 (369)
T 3bw2_A 184 RDSSEDDGAGIGLLSLLAQVREAV-----DIPVVAAGGIMRGGQIAAVLAAGADAAQLGTAFLATDES 246 (369)
T ss_dssp SCCGGGTTCCCCHHHHHHHHHHHC-----SSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSTTC
T ss_pred ccccccccccccHHHHHHHHHHhc-----CceEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCCccc
Confidence 11 1256666666542 4789999999 8999999999999999999999976554
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=99.00 E-value=9.9e-10 Score=97.44 Aligned_cols=163 Identities=17% Similarity=0.208 Sum_probs=112.2
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc-cc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-TI 152 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~-~~ 152 (281)
+.++.+.+.|.|.|.+..-+|... .--.++++++|+ ++.|+.. +..+|..+ -.|||.+.|+.--.+ ..
T Consensus 22 ~~~~~~~~~GtD~i~vGGs~gvt~---~~~~~~v~~ik~-~~~Pvvl--fp~~~~~v-----~~gaD~~l~pslln~~~~ 90 (228)
T 3vzx_A 22 EQLEILCESGTDAVIIGGSDGVTE---DNVLRMMSKVRR-FLVPCVL--EVSAIEAI-----VPGFDLYFIPSVLNSKNA 90 (228)
T ss_dssp THHHHHHTSSCSEEEECCCSCCCH---HHHHHHHHHHTT-SSSCEEE--ECSCGGGC-----CSCCSEEEEEEETTBSSG
T ss_pred HHHHHHHHcCCCEEEECCcCCCCH---HHHHHHHHHhhc-cCCCEEE--eCCCHHHc-----cccCCEEEEeeecCCCCc
Confidence 567778889999999965444221 123567888888 7888775 99998654 369999999843211 11
Q ss_pred c--HHHHHHHHHHcCC-----cEE----EEECCCCCH------------HHHHHhhcc-----CCEEEEEeecCCCCCCc
Q 023494 153 H--LHRTLNQIKDLGA-----KAG----VVLNPATSL------------SAIECVLDV-----VDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 153 ~--i~~~l~~ik~~G~-----k~G----lai~p~t~i------------e~~~~~l~~-----vD~IlvmsV~pG~~GQ~ 204 (281)
+ +..-.+.++++|. ++- +.++|+++. +++..+... .++|.+-. .|..+
T Consensus 91 ~~i~g~~~~a~~~~g~~~~~~e~i~~gYivv~p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~~VYld~--sG~~~-- 166 (228)
T 3vzx_A 91 DWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY--SGVLG-- 166 (228)
T ss_dssp GGTTHHHHHHHHHHHHHHHHSCEEEEEEEECCSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC--TTSCC--
T ss_pred chhhhHHHHHHHHcCCCCcccceeeeEEEEECCCCcceeeecccCCCCHHHHHHHHHHHHHcCCCEEEecC--CCCcC--
Confidence 1 2344467888895 543 479999888 677666553 35665432 33322
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
. .+.|+++++..+ +.++.|.|||+ +|+++++. +|||.+|+||++++.
T Consensus 167 -~---~~~i~~i~~~~~----~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGSa~v~~ 214 (228)
T 3vzx_A 167 -D---IEAVKKTKAVLE----TSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYED 214 (228)
T ss_dssp -C---HHHHHHHHHHCS----SSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHHC
T ss_pred -C---HHHHHHHHHhcC----CCCEEEeCCCCCHHHHHHHH-hCCCEEEEChHHhcC
Confidence 2 445566665541 36899999998 89999987 799999999999973
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.98 E-value=7.9e-09 Score=97.44 Aligned_cols=177 Identities=20% Similarity=0.226 Sum_probs=117.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+.+-+.....+.|+.++| +++.+ ..-.+.++++|+.++.++.+.+.+.+ .++++.+.++|+|.|+++.....
T Consensus 58 ~~~lA~avA~~GGlgii~-----~~~s~--e~~~~~I~~vk~~~~~pvga~ig~~~-~e~a~~l~eaGad~I~ld~a~G~ 129 (361)
T 3khj_A 58 EHLMAVGMARLGGIGIIH-----KNMDM--ESQVNEVLKVKNSGGLRVGAAIGVNE-IERAKLLVEAGVDVIVLDSAHGH 129 (361)
T ss_dssp SHHHHHHHHHTTCEEEEC-----SSSCH--HHHHHHHHHHHHTTCCCCEEEECTTC-HHHHHHHHHTTCSEEEECCSCCS
T ss_pred cHHHHHHHHHcCCCeEEe-----cCCCH--HHHHHHHHHHHhccCceEEEEeCCCH-HHHHHHHHHcCcCeEEEeCCCCC
Confidence 433333456677887776 22222 12234677777777789999998766 66888999999999998755321
Q ss_pred cccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC-CC----ccchhHHHHHHHHHHHhhhc
Q 023494 151 TIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-GQ----SFIESQVKKISDLRRMCLEK 223 (281)
Q Consensus 151 ~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~-GQ----~f~~~~l~kI~~lr~l~~~~ 223 (281)
.....+.++.+++. ++.+.+. +. +..+..+.+.+ .+|+|.+ +..||.- .. .+....+..+.++++.....
T Consensus 130 ~~~~~~~i~~i~~~~~~~Vivg-~v-~t~e~A~~l~~aGaD~I~V-G~~~Gs~~~tr~~~g~g~p~~~~i~~v~~~~~~~ 206 (361)
T 3khj_A 130 SLNIIRTLKEIKSKMNIDVIVG-NV-VTEEATKELIENGADGIKV-GIGPGSICTTRIVAGVGVPQITAIEKCSSVASKF 206 (361)
T ss_dssp BHHHHHHHHHHHHHCCCEEEEE-EE-CSHHHHHHHHHTTCSEEEE-CSSCCTTCCHHHHTCBCCCHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcCCcEEEc-cC-CCHHHHHHHHHcCcCEEEE-ecCCCcCCCcccccCCCCCcHHHHHHHHHHHhhc
Confidence 23345677777775 7666541 11 34566666655 4999987 6667641 11 11112345566665554332
Q ss_pred CCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCC
Q 023494 224 GVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 224 ~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+++|..+||| +.+++.+++++|||.+.+||+++..
T Consensus 207 --~iPVIA~GGI~~~~di~kala~GAd~V~vGs~~~~t 242 (361)
T 3khj_A 207 --GIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT 242 (361)
T ss_dssp --TCCEEEESCCCSHHHHHHHHHHTCSEEEESTTTTTB
T ss_pred --CCeEEEECCCCCHHHHHHHHHcCCCEEEEChhhhcC
Confidence 4789999999 5999999999999999999999874
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=98.96 E-value=3.1e-09 Score=93.91 Aligned_cols=184 Identities=11% Similarity=0.096 Sum_probs=117.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+++.|+|+||+-=++..+ +......+.++.++ .++.|+.+-=-+.++. .++.+.++|||.|.+....
T Consensus 31 ~~~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~~~i~~i~-~~~ipvi~~Ggi~~~~-~~~~~~~~Gad~V~lg~~~-- 105 (241)
T 1qo2_A 31 DPVELVEKLIEEGFTLIHVVDLSNAI-ENSGENLPVLEKLS-EFAEHIQIGGGIRSLD-YAEKLRKLGYRRQIVSSKV-- 105 (241)
T ss_dssp CHHHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTHHHHHHGG-GGGGGEEEESSCCSHH-HHHHHHHTTCCEEEECHHH--
T ss_pred CHHHHHHHHHHcCCCEEEEecccccc-cCCchhHHHHHHHH-hcCCcEEEECCCCCHH-HHHHHHHCCCCEEEECchH--
Confidence 55667788889999999984333211 11233467888888 5667766644445544 5667888999999988764
Q ss_pred cccHHHHHHHHHHcCCc--EEEEECC-------------CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 151 TIHLHRTLNQIKDLGAK--AGVVLNP-------------ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k--~Glai~p-------------~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
..++.. ++.++++|-+ +++.... .++.+..+.+.+. ++.|.+.++.. .|...-+ .++.++
T Consensus 106 l~~p~~-~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~--~g~~~g~-~~~~i~ 181 (241)
T 1qo2_A 106 LEDPSF-LKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEK--DGTLQEH-DFSLTK 181 (241)
T ss_dssp HHCTTH-HHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTH--HHHTCCC-CHHHHH
T ss_pred hhChHH-HHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEEEeecc--cccCCcC-CHHHHH
Confidence 233322 3333666633 3444420 1344555555443 89888866532 1211111 366677
Q ss_pred HHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-----C-CcEEEEcccccCCC-CHHHHHH
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-----G-ANALVAGSAVFGAK-DYAEAIK 268 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-----G-AD~~VvGSaIf~a~-dp~~~~~ 268 (281)
++++.. ++++.+-|||+ ++++..+.+. | +|.+++||+|+..+ ++++..+
T Consensus 182 ~l~~~~-----~iPvia~GGI~~~~d~~~~~~~~~~~~G~adgv~vgsal~~~~~~~~~~~~ 238 (241)
T 1qo2_A 182 KIAIEA-----EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVMKR 238 (241)
T ss_dssp HHHHHH-----TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHHHH
T ss_pred HHHHhc-----CCcEEEECCCCCHHHHHHHHhcccccCCeEeEEEeeHHHHcCCCCHHHHHH
Confidence 777654 36899999999 6999999998 9 99999999999765 4554443
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=98.85 E-value=7.1e-08 Score=93.36 Aligned_cols=194 Identities=14% Similarity=0.134 Sum_probs=141.2
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-||| ++.-|+ +..+..+..+++ +.-|-+ .-|..|. .=+.+-++++|+.++.|+...=.+.||.. +..+..+
T Consensus 57 aSPSkG~i~~~~-~~~~iA~~y~~~-A~~Isv-LTd~~~F---~gs~~dL~~vr~~v~lPvLrKDFI~d~~Q-i~ea~~~ 129 (452)
T 1pii_A 57 ASPSKGVIRDDF-DPARIAAIYKHY-ASAISV-LTDEKYF---QGSFNFLPIVSQIAPQPILCKDFIIDPYQ-IYLARYY 129 (452)
T ss_dssp EETTTEESCSSC-CHHHHHHHHTTT-CSEEEE-ECCSTTT---CCCTTHHHHHHHHCCSCEEEESCCCSHHH-HHHHHHT
T ss_pred CCCCCCccCCCC-CHHHHHHHHHhh-CcEEEE-Eeccccc---CCCHHHHHHHHHhcCCCeEEEeccCCHHH-HHHHHHc
Confidence 5888 455554 666666677766 877654 3455433 23667788888888888866555566654 5558899
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
|||.|.+-....+..++.++++.+++.|+.+-+.++ ..++++..+. .+|+|.+ .+.+... |... ++...++
T Consensus 130 GAD~ILLi~a~l~~~~l~~l~~~a~~lgm~~LvEvh---~~eE~~~A~~lga~iIGi--nnr~L~t--~~~d-l~~~~~L 201 (452)
T 1pii_A 130 QADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVS---NEEEQERAIALGAKVVGI--NNRDLRD--LSID-LNRTREL 201 (452)
T ss_dssp TCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEEC---SHHHHHHHHHTTCSEEEE--ESEETTT--TEEC-THHHHHH
T ss_pred CCCEEEEEcccCCHHHHHHHHHHHHHcCCeEEEEeC---CHHHHHHHHHCCCCEEEE--eCCCCCC--CCCC-HHHHHHH
Confidence 999999988765445799999999999999999986 3444444333 5787754 2334433 3322 5666667
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.+.++. +..+..-|||+ ++.+..+.++ +|.|++|++|.+++||.+.+++|..
T Consensus 202 ~~~ip~---~~~vIaEsGI~t~edv~~~~~~-a~avLVGealmr~~d~~~~~~~l~~ 254 (452)
T 1pii_A 202 APKLGH---NVTVISESGINTYAQVRELSHF-ANGFLIGSALMAHDDLHAAVRRVLL 254 (452)
T ss_dssp HHHHCT---TSEEEEESCCCCHHHHHHHTTT-CSEEEECHHHHTCSCHHHHHHHHHH
T ss_pred HHhCCC---CCeEEEECCCCCHHHHHHHHHh-CCEEEEcHHHcCCcCHHHHHHHHHH
Confidence 776653 45677899999 9999999999 9999999999999999999999874
|
| >2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.83 E-value=4.8e-09 Score=97.25 Aligned_cols=194 Identities=14% Similarity=0.183 Sum_probs=112.6
Q ss_pred EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHc-CcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL-RPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~i-r~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
+++-|+....++.+.++..|+|+| |+.+- ..|. +.+..+ |+..+.+|.+ -..+.++-.... +.||++|
T Consensus 77 V~~K~rig~~~e~qilea~GaD~I--d~s~~-l~p~-----d~~~~i~k~~~~~~~~~--~a~~lgea~r~~-~~Ga~~i 145 (330)
T 2yzr_A 77 VMAKCRIGHTTEALVLEAIGVDMI--DESEV-LTQA-----DPFFHIYKKKFNVPFVC--GARNLGEAVRRI-WEGAAMI 145 (330)
T ss_dssp EEEEEETTCHHHHHHHHHTTCSEE--EEETT-SCCS-----CSSCCCCGGGCSSCEEE--ECSSHHHHHHHH-HHTCSEE
T ss_pred eEEEEeecchHHHHHHHHcCCCEE--ehhcc-CCHH-----HHHHHhhhhhcccchhh--ccccHHHHHHHH-hcCccee
Confidence 344455433567888888999987 64332 2221 111222 2223455555 345655555555 8899999
Q ss_pred EEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH-hhccCCEE-----------------EEEeecCCCCCCc
Q 023494 143 SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLV-----------------LIMSVNPGFGGQS 204 (281)
Q Consensus 143 tvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~-~l~~vD~I-----------------lvmsV~pG~~GQ~ 204 (281)
..|.|+. +..+.+.++.+|.-...+- .+...+.-+.... .-..+||| -+..++|..+-..
T Consensus 146 ~t~ge~g-~~~~ve~v~H~r~~~~~~~-~~s~~~~~El~~~A~~~gadyv~~~~~vt~~~G~~~r~Lg~G~Vf~T~TK~~ 223 (330)
T 2yzr_A 146 RTKGEAG-TGNIVEAVRHMRLMNEAIA-QLQRMTDEEVYGVAKFYANRYAELAKTVREGMGLPATVLENEPIYEGFTLAE 223 (330)
T ss_dssp EECCCTT-SCCTHHHHHHHHHHHHHHH-HHTTSCHHHHHHHHHHHHGGGGHHHHHHHHHTTSCSCCCTTSEEETTEEHHH
T ss_pred eccCCCC-cccchhHHHHHHHHHHHHH-HhccCCHHHHHHHHHHcCCCEeecccchhhhccccccccccccccCCCcccC
Confidence 9999985 6666666555443110000 1222233333221 11236661 1122222221110
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeE--EEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWI--EVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I--~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
-.+..++.|+++++.. .+++ ...||| +++++..+.++|+|.+.+||+|++++||.+.+++|++.++
T Consensus 224 ~~~~~lell~~i~~~~-----~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VGsaI~~a~dP~~aar~l~~ai~ 292 (330)
T 2yzr_A 224 IIDGLYEVLLEVKKLG-----RLPVVNFAAGGVATPADAALMMQLGSDGVFVGSGIFKSENPLERARAIVEATY 292 (330)
T ss_dssp HHHHHHHHHHHHHHHT-----SCSSEEEECSCCCSHHHHHHHHHTTCSCEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHhC-----CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeHHHHhcCCCHHHHHHHHHHHHH
Confidence 1123345666665532 2454 479999 5999999999999999999999999999999999988654
|
| >2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=85.14 Aligned_cols=179 Identities=19% Similarity=0.238 Sum_probs=118.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecC-----h-----hhHHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVE-----P-----EQRVPDFI 135 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~d-----p-----~~~i~~~~ 135 (281)
+..++.+.++.+.+.|++.+-+ +. ..++.+++. .+.++.+|+--.. + ...++.+.
T Consensus 43 ~~~~~~~~~~~~~~~g~~~i~~---~~----------~~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~ 109 (273)
T 2qjg_A 43 GLIDIRKTVNDVAEGGANAVLL---HK----------GIVRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEEAI 109 (273)
T ss_dssp TSSSHHHHHHHHHHHTCSEEEE---CH----------HHHHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECSCHHHHH
T ss_pred chhhHHHHHHHHHhcCCCEEEe---CH----------HHHHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHHHHHHHH
Confidence 5567778888889999998743 11 234444332 2456777765443 2 34578899
Q ss_pred HcCCCEEEEcc--ccccc----ccHHHHHHHHHHcCCcEEEEECCC-------CCH---HHH-HHhhc-cCCEEEEEeec
Q 023494 136 KAGADIVSVHC--EQSST----IHLHRTLNQIKDLGAKAGVVLNPA-------TSL---SAI-ECVLD-VVDLVLIMSVN 197 (281)
Q Consensus 136 ~aGAd~Itvh~--Ea~~~----~~i~~~l~~ik~~G~k~Glai~p~-------t~i---e~~-~~~l~-~vD~IlvmsV~ 197 (281)
++|||.|-++. -..+. +.+.++.+.++++|+.+-+.+.+. .+. +.+ +...+ .+|+|.+-
T Consensus 110 ~~Ga~~v~~~l~~~~~~~~~~~~~~~~v~~~~~~~g~~viv~~~~~G~~l~~~~~~~~~~~~a~~a~~~Gad~i~~~--- 186 (273)
T 2qjg_A 110 RMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNERDPELVAHAARLGAELGADIVKTS--- 186 (273)
T ss_dssp HTTCSEEEEEEEETSTTHHHHHHHHHHHHHHHHHHTCCEEEEEEECSTTCSCTTCHHHHHHHHHHHHHTTCSEEEEC---
T ss_pred HcCCCEEEEEEecCCCCHHHHHHHHHHHHHHHHHcCCCEEEEeCCCCcccCCCCCHhHHHHHHHHHHHcCCCEEEEC---
Confidence 99999994442 11111 235677788888899887654210 122 222 22222 38988652
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhc-------HHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-------AYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~-------i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
++ ..++.++++++.. ++++.+-|||+.++ +..+.++||+.+.+||+|++++||.+.++++
T Consensus 187 ~~--------~~~~~l~~i~~~~-----~ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~vg~~i~~~~~~~~~~~~l 253 (273)
T 2qjg_A 187 YT--------GDIDSFRDVVKGC-----PAPVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAVGRNIFQHDDVVGITRAV 253 (273)
T ss_dssp CC--------SSHHHHHHHHHHC-----SSCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEECCHHHHTSSSHHHHHHHH
T ss_pred CC--------CCHHHHHHHHHhC-----CCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEeeHHhhCCCCHHHHHHHH
Confidence 21 2355666666543 36899999999766 8888899999999999999999999999999
Q ss_pred HHhcC
Q 023494 271 KTSKR 275 (281)
Q Consensus 271 ~~~~~ 275 (281)
++.++
T Consensus 254 ~~~~~ 258 (273)
T 2qjg_A 254 CKIVH 258 (273)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87654
|
| >1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.4e-07 Score=86.94 Aligned_cols=189 Identities=13% Similarity=0.043 Sum_probs=117.4
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcC-cCCCCCeeEEEEe---------cC-h---hhHHHHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR-PVTDLPLDVHLMI---------VE-P---EQRVPDFI 135 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir-~~t~~~idaHLmv---------~d-p---~~~i~~~~ 135 (281)
.++++.+..+.+.|++-+=+ |. .++......-+ ..++.++.++|=- .+ . ..-++.++
T Consensus 48 ~~~k~lv~~~~~~~~~avl~---~~------g~~~~a~~~~~~~~~~~glil~l~~~~~l~~~~~~~~l~~~~~~ve~a~ 118 (304)
T 1to3_A 48 TDFKVNAAKILSPYASAVLL---DQ------QFCYRQAVEQNAVAKSCAMIVAADDFIPGNGIPVDNVVLDKKINAQAVK 118 (304)
T ss_dssp HHHHHHHHHHHGGGCSEEEE---CT------TTTHHHHHHTTCSCTTSEEEEECEEEEEETTEEEEEEEECSSCCHHHHH
T ss_pred hhHHHHHHHHHhcCCCEEEe---CH------HHHHHHhhcccccCCCCcEEEEECCCCCCCCCccchhhccCchhHHHHH
Confidence 46667777777888887633 33 23444333112 2245667776521 11 1 13478899
Q ss_pred HcCCCEEEEcccccc-c------ccHHHHHHHHHHcCCcEEEEECCC--------CC---HH-HHHHhhc-cCCEEEEEe
Q 023494 136 KAGADIVSVHCEQSS-T------IHLHRTLNQIKDLGAKAGVVLNPA--------TS---LS-AIECVLD-VVDLVLIMS 195 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~-~------~~i~~~l~~ik~~G~k~Glai~p~--------t~---ie-~~~~~l~-~vD~Ilvms 195 (281)
+.|||.|.++.-..+ . .++.++.+.++++|+.+-+.+.+. .+ +. ..+...+ .+|+|-+
T Consensus 119 ~~GAdaV~vlv~~~~d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~~~g~~v~~~~~~~~~v~~aa~~a~~lGaD~iKv-- 196 (304)
T 1to3_A 119 RDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGADLYKV-- 196 (304)
T ss_dssp HTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCSEEEE--
T ss_pred HcCCCEEEEEEEcCCCccHHHHHHHHHHHHHHHHHcCCcEEEEEECCCCccccCCChhHHHHHHHHHHHHcCCCEEEe--
Confidence 999999996643211 1 467888899999999988865321 11 11 1222223 3898744
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe-EEEecCCChh----cHHHHHHcCCcEEEEcccccCC----CCHHHH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW-IEVDGGVGPK----NAYKVIEAGANALVAGSAVFGA----KDYAEA 266 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~-I~VDGGI~~e----~i~~~~~aGAD~~VvGSaIf~a----~dp~~~ 266 (281)
+|+..+.. ..+.++++.+..... -..+ |.+.||++.+ ++..++++|++++++||+||++ +||.+.
T Consensus 197 -~~~~~~~g----~~~~~~~vv~~~~~~-~~~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~vGRaI~q~~~~~~dp~~~ 270 (304)
T 1to3_A 197 -EMPLYGKG----ARSDLLTASQRLNGH-INMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSSVIGLPDTELM 270 (304)
T ss_dssp -CCGGGGCS----CHHHHHHHHHHHHHT-CCSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGGGTTCSCHHHH
T ss_pred -CCCcCCCC----CHHHHHHHHHhcccc-CCCCeEEEecCCCHHHHHHHHHHHHHcCCeEEEEehHHhCccccCCCHHHH
Confidence 44321111 223333333332221 1357 9999999984 5999999999999999999999 999999
Q ss_pred H--------HHHHHhcC
Q 023494 267 I--------KGIKTSKR 275 (281)
Q Consensus 267 ~--------~~l~~~~~ 275 (281)
+ ++|++.+.
T Consensus 271 ~~~~~~~~~~~l~~iv~ 287 (304)
T 1to3_A 271 LRDVSAPKLQRLGEIVD 287 (304)
T ss_dssp HHHTHHHHHHHHHHHHH
T ss_pred HHhhchHHHHHHHHHHh
Confidence 9 88887553
|
| >1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A | Back alignment and structure |
|---|
Probab=98.76 E-value=7.7e-07 Score=80.24 Aligned_cols=179 Identities=18% Similarity=0.128 Sum_probs=118.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC------h----hhHHHHHHHc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE------P----EQRVPDFIKA 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d------p----~~~i~~~~~a 137 (281)
...++++.++.+.+.|++.+-++ +.+++..+ ..+.++.+|+-..- | ..-++.+.+.
T Consensus 39 ~~~di~~~~~~a~~~~~~av~v~-------------~~~v~~~~-~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~~ 104 (263)
T 1w8s_A 39 DSADPEYILRLARDAGFDGVVFQ-------------RGIAEKYY-DGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSL 104 (263)
T ss_dssp GGGCHHHHHHHHHHHTCSEEEEC-------------HHHHHHHC-CSSSCEEEECEECCTTCCSSCCCEESSCHHHHHHT
T ss_pred chhhHHHHHHHHHhhCCCEEEEC-------------HHHHHHhh-cCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHHC
Confidence 35578888888889999887542 33444444 33445555552211 1 1237788999
Q ss_pred CCCEEEEccccc--c----cccHHHHHHHHHHcCCcEEEEECCCC-------CHHHHHH---hhc--cCCEEEEEeecCC
Q 023494 138 GADIVSVHCEQS--S----TIHLHRTLNQIKDLGAKAGVVLNPAT-------SLSAIEC---VLD--VVDLVLIMSVNPG 199 (281)
Q Consensus 138 GAd~Itvh~Ea~--~----~~~i~~~l~~ik~~G~k~Glai~p~t-------~ie~~~~---~l~--~vD~IlvmsV~pG 199 (281)
|||.|-++..-. . .+++.++.+.++++|+++.+...+.- +.+.+.. ... .+|||-+- .||
T Consensus 105 Ga~~v~~~~nig~~~~~~~~~~~~~v~~~~~~~~~~vIi~~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD~vkt~--~~~ 182 (263)
T 1w8s_A 105 GASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNETAPEIVAYAARIALELGADAMKIK--YTG 182 (263)
T ss_dssp TCSEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEEE--CCS
T ss_pred CCCEEEEEEecCCcCHHHHHHHHHHHHHHHHHcCCeEEEEeeCCCCccccCCCHHHHHHHHHHHHHcCCCEEEEc--CCC
Confidence 999999986211 1 12345666667788999866544410 2233332 222 38998653 231
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.++.++++++..+ ..++.+.|||+.+ ++..++++||+.+.+||+||+++||.+.+++|++
T Consensus 183 ---------~~e~~~~~~~~~~----~~pV~asGGi~~~~~~~~l~~i~~~~~aGA~GvsvgraI~~~~dp~~~~~~l~~ 249 (263)
T 1w8s_A 183 ---------DPKTFSWAVKVAG----KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAE 249 (263)
T ss_dssp ---------SHHHHHHHHHHTT----TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHhCC----CCeEEEEeCCCCCCHHHHHHHHHHHHHcCCeEEEEehhhcCCcCHHHHHHHHHH
Confidence 3455666665542 2378999999976 7888889999999999999999999999999998
Q ss_pred hcC
Q 023494 273 SKR 275 (281)
Q Consensus 273 ~~~ 275 (281)
.+.
T Consensus 250 ~v~ 252 (263)
T 1w8s_A 250 LVY 252 (263)
T ss_dssp HHC
T ss_pred HHh
Confidence 765
|
| >3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A | Back alignment and structure |
|---|
Probab=98.73 E-value=3e-09 Score=96.35 Aligned_cols=192 Identities=15% Similarity=0.206 Sum_probs=122.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccccc-c-cC-------CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN-I-TI-------GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~-~~-------G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.|..+- ++.+.++++|+..+ =+.++ +|. + .+ +|+.|++|++..++|+..-.++-+ ..-.+.+.++
T Consensus 16 mdv~~~-eqa~iae~aGa~av--~~l~~--~p~d~r~~gGv~Rm~dp~~I~~I~~aVsIPVm~k~righ-~~EAqilea~ 89 (291)
T 3o07_A 16 MDVVTP-EQAKIAEKSGACAV--MALES--IPADMRKSGKVCRMSDPKMIKDIMNSVSIPVMAKVRIGH-FVEAQIIEAL 89 (291)
T ss_dssp EEESSH-HHHHHHHHHTCSEE--EECSS--CHHHHHTTTCCCCCCCHHHHHHHHTTCSSCEEEEEETTC-HHHHHHHHHT
T ss_pred eecCCH-HHHHHHHHhCchhh--hhccC--CCchhhhcCCccccCCHHHHHHHHHhCCCCeEEEEecCc-HHHHHHHHHc
Confidence 355454 56788999998754 33444 453 1 33 399999999988899999777666 1224456789
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH-HHHHHhhccCCEEEEEeecCCCCCC-------------
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAIECVLDVVDLVLIMSVNPGFGGQ------------- 203 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-e~~~~~l~~vD~IlvmsV~pG~~GQ------------- 203 (281)
|+|+| .|+ ...++.+....+++...++-+ ++.-..+ |.+..+-..+|+|-- +-++|++.-
T Consensus 90 GaD~I---Des-evltpad~~~~I~k~~f~vpf-v~~~~~l~EAlrri~eGA~mIrT-tge~gtg~v~~av~h~r~~~~~ 163 (291)
T 3o07_A 90 EVDYI---DES-EVLTPADWTHHIEKDKFKVPF-VCGAKDLGEALRRINEGAAMIRT-KGEAGTGDVSEAVKHIRRITEE 163 (291)
T ss_dssp TCSEE---EEE-TTSCCSCSSCCCCGGGCSSCE-EEEESSHHHHHHHHHHTCSEEEE-CCCTTSCCTHHHHHHHHHHHHH
T ss_pred CCCEE---ecc-cCCCHHHHHHHhhhhcCCCcE-EeeCCCHHHHHHHHHCCCCEEEe-cCcCCCccHHHHHHHHHHHHHH
Confidence 99999 332 123344445555553333322 2222344 445555556898843 235554321
Q ss_pred -----cc-c-----------hhHHHHHHHHHHHhhhcCCCCeEEE--ecCC-ChhcHHHHHHcCCcEEEEcccccCCCCH
Q 023494 204 -----SF-I-----------ESQVKKISDLRRMCLEKGVNPWIEV--DGGV-GPKNAYKVIEAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 204 -----~f-~-----------~~~l~kI~~lr~l~~~~~~~~~I~V--DGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp 263 (281)
.+ . ...++.|+++++.. ++++.+ .||| +++++..+.+.|+|.+.+||+||+++||
T Consensus 164 i~~l~g~~t~~el~~~a~~~~ad~elI~~Ike~~-----~IPVV~IAnGGI~TpedA~~~le~GaDGVmVGrAI~~s~DP 238 (291)
T 3o07_A 164 IKACQQLKSEDDIAKVAEEMRVPVSLLKDVLEKG-----KLPVVNFAAGGVATPADAALLMQLGCDGVFVGSGIFKSSNP 238 (291)
T ss_dssp HHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHHT-----SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEECGGGGGSSCH
T ss_pred HHHHHcCCCHHHhhhcccccCCCHHHHHHHHHcc-----CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEchHHhCCCCH
Confidence 01 1 11244455555542 356543 6999 6999999999999999999999999999
Q ss_pred HHHHHHHHHhcC
Q 023494 264 AEAIKGIKTSKR 275 (281)
Q Consensus 264 ~~~~~~l~~~~~ 275 (281)
...++++.+.++
T Consensus 239 ~~~Akafv~Av~ 250 (291)
T 3o07_A 239 VRLATAVVEATT 250 (291)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988654
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=8.3e-08 Score=87.38 Aligned_cols=161 Identities=17% Similarity=0.183 Sum_probs=106.9
Q ss_pred HHcCc-CCCCCeeEEEEecChhhHHHH---HHH-cCCCEEEEcccccc-----------cccHHHHHHHHHHc-CCcEEE
Q 023494 108 DALRP-VTDLPLDVHLMIVEPEQRVPD---FIK-AGADIVSVHCEQSS-----------TIHLHRTLNQIKDL-GAKAGV 170 (281)
Q Consensus 108 ~~ir~-~t~~~idaHLmv~dp~~~i~~---~~~-aGAd~Itvh~Ea~~-----------~~~i~~~l~~ik~~-G~k~Gl 170 (281)
+.+|+ .++.|+.+.+...++..|.+. +.+ +|+|.|-+|.-+.. ...+.++++++++. ++.+.+
T Consensus 90 ~~~~~~~~~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~v 169 (311)
T 1ep3_A 90 PWLNENFPELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYV 169 (311)
T ss_dssp HHHHHHCTTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEE
T ss_pred HHHHhcCCCCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEE
Confidence 34555 457899999998888876543 344 89999999864310 11247888888887 888888
Q ss_pred EECCCC--CHHHHHHhhc-cCCEEEEEee------cC------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 171 VLNPAT--SLSAIECVLD-VVDLVLIMSV------NP------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 171 ai~p~t--~ie~~~~~l~-~vD~IlvmsV------~p------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
-+.|+. ..+..+.+.+ .+|+|.+... ++ |+.|....+..++.++++++.. +++|
T Consensus 170 k~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-----~ipv 244 (311)
T 1ep3_A 170 KLSPNVTDIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-----DIPI 244 (311)
T ss_dssp EECSCSSCSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-----SSCE
T ss_pred EECCChHHHHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-----CCCE
Confidence 777653 3444444444 3899987321 11 1223333344456666665532 5789
Q ss_pred EEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCH-HHHHHHHHHh
Q 023494 230 EVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDY-AEAIKGIKTS 273 (281)
Q Consensus 230 ~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp-~~~~~~l~~~ 273 (281)
.+.||| +.+++.+++++|||.+.+||+++..++. .+..+.++..
T Consensus 245 ia~GGI~~~~d~~~~l~~GAd~V~vg~~~l~~p~~~~~i~~~l~~~ 290 (311)
T 1ep3_A 245 IGMGGVANAQDVLEMYMAGASAVAVGTANFADPFVCPKIIDKLPEL 290 (311)
T ss_dssp EECSSCCSHHHHHHHHHHTCSEEEECTHHHHCTTHHHHHHHHHHHH
T ss_pred EEECCcCCHHHHHHHHHcCCCEEEECHHHHcCcHHHHHHHHHHHHH
Confidence 999999 5999999999999999999998875543 3334444443
|
| >3qw3_A Orotidine-5-phosphate decarboxylase/orotate phosphoribosyltransferase, putative (OMPDCASE-OPRTASE,...; orotidine monophosphate decarboxylase; 1.70A {Leishmania infantum} | Back alignment and structure |
|---|
Probab=98.66 E-value=2.9e-07 Score=82.85 Aligned_cols=191 Identities=11% Similarity=0.076 Sum_probs=109.5
Q ss_pred eEEEeccCccC------HHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHH---HHHHcCcC--CCCCeeEEEEecC
Q 023494 61 SPSILSANFAK------LGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPL---VVDALRPV--TDLPLDVHLMIVE 126 (281)
Q Consensus 61 ~pSila~D~~~------l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~---~I~~ir~~--t~~~idaHLmv~d 126 (281)
+|-++++|+.. .+..++.+++.+ +.++-+ | .+.+ .+|++ .++++.+. .++++.+|+|..|
T Consensus 14 ~~LcVgLD~~~~~~~~~~~~~~~lv~~l~~~v~~~Kv----g--~~lf~~~G~~g~~~l~~l~~~~~~g~~VflDlK~~D 87 (255)
T 3qw3_A 14 SLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKP----N--AAFFEFFGAEGWAALSEVIRAVPAGIPVVLDAKRGD 87 (255)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEE----B--HHHHHTTTHHHHHHHHHHHHHSCTTCCBEEEEEECC
T ss_pred CCEEEEeCCCchhcchHHHHHHHHHHHhCCcCcEEEE----c--HHHHHhcCHHHHHHHHHHHHHhcCCCeEEEEeecCC
Confidence 34567788763 333444444332 444444 3 2323 78876 44444331 5789999999999
Q ss_pred hhh----HHHHHH-HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH---------------HHHHHhhc
Q 023494 127 PEQ----RVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL---------------SAIECVLD 186 (281)
Q Consensus 127 p~~----~i~~~~-~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i---------------e~~~~~l~ 186 (281)
... |.+.++ +.|+|.+|+|.-.. .+.++.+++ ..|..+.+....+.+- +.+..+..
T Consensus 88 I~nTv~~~a~~~~~~lg~d~vTvh~~~G-~~~l~~~~~---~~~~gv~vL~~tS~~~~~~~q~~~~~~~~~~~~V~~~a~ 163 (255)
T 3qw3_A 88 IADTADAYATSAFKHLNAHAITASPYMG-SDSLQPFMR---YPDKAVFVLCKTSNKGSNDLQCLRVGDRYLYEAVAERAE 163 (255)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEECCTTC-HHHHHHHHT---CTTSEEEEEEECCSGGGGTTTTSEETTEEHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCCEEEEcccCC-HHHHHHHHH---hhCCceEEEEeCCCccHHHHHhcccCCCCHHHHHHHHHH
Confidence 875 455555 58999999998753 333444333 2344444443333221 11111111
Q ss_pred c-CCEEEEEeecCCCCCCccc-hh-HHHHHHHHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCc------EEEEcc
Q 023494 187 V-VDLVLIMSVNPGFGGQSFI-ES-QVKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGAN------ALVAGS 255 (281)
Q Consensus 187 ~-vD~IlvmsV~pG~~GQ~f~-~~-~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD------~~VvGS 255 (281)
. . -..|..| +. .. ..+.++.+|+..++ . .+ +-.||+++ +..+++++|+| ++|+||
T Consensus 164 ~~~-------~~~g~~G--vV~~at~~~e~~~ir~~~~~---~-~~-l~PGIg~qg~tp~~a~~~G~d~~~~~~livvGR 229 (255)
T 3qw3_A 164 GPW-------NVNGNVG--LVVGATDPVALARVRARAPT---L-WF-LVPGIGAQGGSLKASLDAGLRADGSGMLINVSR 229 (255)
T ss_dssp TGG-------GGGSCEE--EEECSSCHHHHHHHHHHCSS---C-CE-EECCC-----CHHHHHHHHCCTTSCCEEEEESH
T ss_pred HHh-------hhhCCeE--EEECCCCHHHHHHHHHHCCC---C-eE-EECCcCCCCCCHHHHHHcCCCcccCeeEEEeCh
Confidence 1 0 0112211 11 00 12345566666543 2 34 56888866 89999999999 499999
Q ss_pred cccCCCCHHHHHHHHHHhcC
Q 023494 256 AVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 256 aIf~a~dp~~~~~~l~~~~~ 275 (281)
.|+.++||.++++++++.+.
T Consensus 230 ~I~~A~dp~~aa~~i~~~i~ 249 (255)
T 3qw3_A 230 GLARAADPRAAAKELCEEIN 249 (255)
T ss_dssp HHHTSSCHHHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHHHH
Confidence 99999999999999988764
|
| >2ffc_A Orotidine 5-monophosphate decarboxylase; PV-PF10_0225, SGC, structural genomics, struc genomics consortium, lyase; HET: U5P; 1.70A {Plasmodium vivax} SCOP: c.1.2.3 PDB: 2guu_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.3e-07 Score=87.13 Aligned_cols=165 Identities=16% Similarity=0.169 Sum_probs=100.0
Q ss_pred ccc-cCCHHH-------HHHcCcCCCCCeeEEEEecChhhHHHHH----H-HcCCCEEEEcccccccccHHHHHHHHHHc
Q 023494 98 PNI-TIGPLV-------VDALRPVTDLPLDVHLMIVEPEQRVPDF----I-KAGADIVSVHCEQSSTIHLHRTLNQIKDL 164 (281)
Q Consensus 98 pn~-~~G~~~-------I~~ir~~t~~~idaHLmv~dp~~~i~~~----~-~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~ 164 (281)
+.+ .+|++. ++.+|+. ++++.+|+|..|....+..+ + +.|+|++|+|+-.. .+.++.+++..+
T Consensus 137 ~lfea~G~~gi~~L~~~v~~lr~~-g~~VflDlK~~DIgnTva~ya~a~~~~lgaD~vTVhp~~G-~dsl~~a~~~~~-- 212 (353)
T 2ffc_A 137 AFYLPYGSLGVDVLKNVFDYLHHL-NVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMG-TQMLRDICLDEE-- 212 (353)
T ss_dssp GGGSTTTHHHHHHHHHHHHHHHHH-TCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-STTHHHHHBCTT--
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHc-CCcEEEEEecCchHHHHHHHHHHHHHHcCCCEEEEeCCCC-HHHHHHHHHHhc--
Confidence 444 889988 7777775 78999999999997655443 3 68999999998763 556666663322
Q ss_pred CC---cEEE--EEC-CCC------------CH-HHHHHhhcc--CCEEEEEee-cCCCCCCccch-hHHHHHHHHHHHhh
Q 023494 165 GA---KAGV--VLN-PAT------------SL-SAIECVLDV--VDLVLIMSV-NPGFGGQSFIE-SQVKKISDLRRMCL 221 (281)
Q Consensus 165 G~---k~Gl--ai~-p~t------------~i-e~~~~~l~~--vD~IlvmsV-~pG~~GQ~f~~-~~l~kI~~lr~l~~ 221 (281)
|. .+.+ .++ |+. ++ +.+..+... .+++ .. ..|.-|.- .+ ...+.++.+|+..+
T Consensus 213 ~k~~~gV~VL~lTSN~~~~dlq~~~~~~g~~v~e~V~~~A~~~g~~~~---~~~~~G~~g~V-VGats~~el~~IR~~~~ 288 (353)
T 2ffc_A 213 CKRYYSTFVLVKTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQLH---LEENGEFVGFV-VGANCYDEIKKIRELFP 288 (353)
T ss_dssp SCCBCEEEEEEECSSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTT---TGGGTCCEEEE-ECTTCHHHHHHHHHHCT
T ss_pred CCCcceEEEehhcCCCCHHHHHHhhccCCCCHHHHHHHHHHHhCcccc---ccCCCCCCCEE-EeCCCHHHHHHHHHhCC
Confidence 22 2333 222 321 11 111111110 0100 00 01110100 00 11234455565543
Q ss_pred hcCCCCeEEEecCCCh--hcHHHHHHcCCc------EEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 222 EKGVNPWIEVDGGVGP--KNAYKVIEAGAN------ALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 222 ~~~~~~~I~VDGGI~~--e~i~~~~~aGAD------~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
++.+ +..||.+ .+..+++++|+| ++|+||+|+.++||+++++++++.+.
T Consensus 289 ----~~~i-LtPGIgaqGGD~~~a~~~Gad~~~~~~iIvVGR~I~~A~dp~~AA~~i~~ei~ 345 (353)
T 2ffc_A 289 ----DCYI-LAPGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIK 345 (353)
T ss_dssp ----TCCE-EECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred ----CCeE-EeCcccCCCCCHHHHHHcCCCcccCcEEEEECHHHcCCCCHHHHHHHHHHHHH
Confidence 2444 6888885 378899999998 99999999999999999999998764
|
| >4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ... | Back alignment and structure |
|---|
Probab=98.59 E-value=1.4e-06 Score=78.19 Aligned_cols=187 Identities=16% Similarity=0.143 Sum_probs=126.6
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
=|||=...++ +..+ +....++|+.-|-| .-|..| |.=..+.++.+|+.++.|+..-=.+-||.+ +..+..+||
T Consensus 55 aSPSkg~i~~-dp~~-iA~~~~~GA~aiSV-LTd~~~---F~Gs~~~L~~vr~~v~lPvLrKDFiid~yQ-I~eAr~~GA 127 (258)
T 4a29_A 55 KSPSGLDVER-DPIE-YAKFMERYAVGLSI-TTEEKY---FNGSYETLRKIASSVSIPILMSDFIVKESQ-IDDAYNLGA 127 (258)
T ss_dssp BCTTSCBCCC-CHHH-HHHHHTTTCSEEEE-ECCSTT---TCCCHHHHHHHHTTCSSCEEEESCCCSHHH-HHHHHHHTC
T ss_pred CCCCCCCccC-CHHH-HHHHHhCCCeEEEE-eCCCCC---CCCCHHHHHHHHHhcCCCEeeccccccHHH-HHHHHHcCC
Confidence 3566322232 2333 33344679998765 445432 344678889999888899876545567653 455777899
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
|.|.+-....+..++.++++.+++.|+.+-+-++. .++++..+. .+++|.+=..+. ..|. -.++.-.++..
T Consensus 128 DaILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~---~~El~rAl~~~a~iIGINNRnL----~tf~-vdl~~t~~L~~ 199 (258)
T 4a29_A 128 DTVLLIVKILTERELESLLEYARSYGMEPLILIND---ENDLDIALRIGARFIGIMSRDF----ETGE-INKENQRKLIS 199 (258)
T ss_dssp SEEEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESS---HHHHHHHHHTTCSEEEECSBCT----TTCC-BCHHHHHHHHT
T ss_pred CeeehHHhhcCHHHHHHHHHHHHHHhHHHHHhcch---HHHHHHHhcCCCcEEEEeCCCc----cccc-cCHHHHHHHHh
Confidence 99999887765567899999999999999998864 333443333 577774422221 1122 12444555666
Q ss_pred HhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHH
Q 023494 219 MCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~ 264 (281)
.+++ +..+..-+||+ ++++..+.++|+|.|.+|+++.+++||.
T Consensus 200 ~ip~---~~~~VsESGI~t~~dv~~l~~~G~~a~LVGealmr~~d~~ 243 (258)
T 4a29_A 200 MIPS---NVVKVAKLGISERNEIEELRKLGVNAFLISSSLMRNPEKI 243 (258)
T ss_dssp TSCT---TSEEEEEESSCCHHHHHHHHHTTCCEEEECHHHHHCTTHH
T ss_pred hCCC---CCEEEEcCCCCCHHHHHHHHHCCCCEEEECHHHhCCCcHH
Confidence 6553 45566789997 8999999999999999999999988874
|
| >3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani} | Back alignment and structure |
|---|
Probab=98.57 E-value=5.2e-07 Score=87.43 Aligned_cols=197 Identities=14% Similarity=0.082 Sum_probs=118.0
Q ss_pred eEEEeccCccC------HHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcC-----CCCCeeEEEEecC
Q 023494 61 SPSILSANFAK------LGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV-----TDLPLDVHLMIVE 126 (281)
Q Consensus 61 ~pSila~D~~~------l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~-----t~~~idaHLmv~d 126 (281)
+|-+.++|+.. .+..++.+++.+ +.++-+ | .+.+ .+|++.++.|++. .++++.+|+|..|
T Consensus 15 ~~l~vaLD~~~~~~~~~~~~a~~~v~~~~~~v~~~Kv----g--~~lf~~~G~~~v~~L~~~~~~~~~g~~VflDlK~~D 88 (453)
T 3qw4_B 15 SLLCVGLDPRAKTAAAAVEECKRLIEQTHEYAAAYKP----N--AAFFEFFGAEGWAALSEVIRAVPAGIPVVLDAKRGD 88 (453)
T ss_dssp CCEEEEECCCCSSHHHHHHHHHHHHHHHGGGCSEEEE----B--HHHHHTTHHHHHHHHHHHHHTSCTTSCBEEEEEECC
T ss_pred CCEEEEeCCCcccccHHHHHHHHHHHHhCCcCcEEEE----c--HHHHHhcCHHHHHHHHHHHHhhcCCCeEEEEeecCC
Confidence 35577889877 554444444431 444444 3 2333 7899999988773 5789999999999
Q ss_pred hhh----HHHHHHH-cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH-HHH-----------HHhhccCC
Q 023494 127 PEQ----RVPDFIK-AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SAI-----------ECVLDVVD 189 (281)
Q Consensus 127 p~~----~i~~~~~-aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-e~~-----------~~~l~~vD 189 (281)
... |.+.+++ .|+|.+|+|.-.. .+.+..+++. .|..+.+....+.+- ..+ +.++..+.
T Consensus 89 IpnT~~~~a~~~~~~lg~d~vTvh~~~G-~~~l~~~~~~---~~~~v~vL~~tS~~~~~~lq~~~~~~~~~~~~V~~~a~ 164 (453)
T 3qw4_B 89 IADTADAYATSAFKHLNAHAITASPYMG-SDSLQPFMRY---PDKAVFVLCKTSNKGSNDLQCLRVGDRYLYEAVAERAE 164 (453)
T ss_dssp CHHHHHHHHHHHHTTSCCSEEEECSTTC-HHHHHHHHTC---TTSEEEEEEECSSGGGGGTTTSEETTEEHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHcCCCEEEEcccCC-HHHHHHHHHh---hCCcEEEEEeCCCcchHHHHhcccCCCCHHHHHHHHHH
Confidence 875 4445554 8999999998753 3334444332 344454444333321 011 11111111
Q ss_pred EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCcE------EEEcccccCCC
Q 023494 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGANA------LVAGSAVFGAK 261 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD~------~VvGSaIf~a~ 261 (281)
...-..|..|----....+.++.+|+.+++ . .+ +-.||.++ +..+++++|+|. +|+|+.|+.++
T Consensus 165 ---~~~~~~g~~GvV~gat~~~e~~~ir~~~~~---~-~~-l~PGig~qg~tp~~a~~~g~d~~~~~~livvgR~I~~A~ 236 (453)
T 3qw4_B 165 ---GPWNVNGNVGLVVGATDPVALARVRARAPT---L-WF-LVPGIGAQGGSLKASLDAGLRADGSGMLINVSRGLARAA 236 (453)
T ss_dssp ---TTTCTTSCEEEEECTTCHHHHHHHHHHCSS---C-CE-EECCSSTTCCCHHHHHHHHCCTTSCCEEEEESHHHHSCS
T ss_pred ---HHHhhcCCeEEEECCCCHHHHHHHHHhCCC---C-eE-EECCcCCCCCCHHHHHHhcCCcccCCceEecChhhccCC
Confidence 000012222200000113345666666543 2 35 45888865 899999999998 99999999999
Q ss_pred CHHHHHHHHHHhcC
Q 023494 262 DYAEAIKGIKTSKR 275 (281)
Q Consensus 262 dp~~~~~~l~~~~~ 275 (281)
||.++++++++.++
T Consensus 237 dp~~aa~~i~~~i~ 250 (453)
T 3qw4_B 237 DPRAAAKELCEEIN 250 (453)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999999887653
|
| >1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1 | Back alignment and structure |
|---|
Probab=98.51 E-value=7.9e-07 Score=79.91 Aligned_cols=191 Identities=18% Similarity=0.181 Sum_probs=115.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHH-c-
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIK-A- 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~-a- 137 (281)
-+.+.+..-+.++..|++.+-+=+---.... -.-...+.+.|++ ..++++-|..+ +..++..+ +
T Consensus 28 ky~~~~~~~~a~~asg~e~vtva~rR~~~~~-~~~~~~~~~~i~~-----~~~~~lpNTag~~ta~eAv~~a~lare~~~ 101 (265)
T 1wv2_A 28 KYKDLDETRRAIEASGAEIVTVAVRRTNIGQ-NPDEPNLLDVIPP-----DRYTILPNTAGCYDAVEAVRTCRLARELLD 101 (265)
T ss_dssp CSSSHHHHHHHHHHSCCSEEEEEGGGCCC--------------CT-----TTSEEEEECTTCCSHHHHHHHHHHHHTTTT
T ss_pred CCCCHHHHHHHHHHhCCCeEEEEEEeecccc-CCCcchHHhhhhh-----cCCEECCcCCCCCCHHHHHHHHHHHHHHcC
Confidence 4446666666777889988766432111000 0112344444432 24566665553 12333445 3
Q ss_pred CCCEEEEccccc---ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHH
Q 023494 138 GADIVSVHCEQS---STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 138 GAd~Itvh~Ea~---~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
|.+||-+-.-.. ...++.++++++++. |+++-..+.++ +...+.+.+ .++.|+-++...|. |+... ..
T Consensus 102 ~~~~iKlEv~~d~~~llpD~~~tv~aa~~L~~~Gf~Vlpy~~dd--~~~akrl~~~G~~aVmPlg~pIGs-G~Gi~--~~ 176 (265)
T 1wv2_A 102 GHNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDD--PIIARQLAEIGCIAVMPLAGLIGS-GLGIC--NP 176 (265)
T ss_dssp SCCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSC--HHHHHHHHHSCCSEEEECSSSTTC-CCCCS--CH
T ss_pred CCCeEEEEeecCccccCcCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCCCEEEeCCccCCC-CCCcC--CH
Confidence 678887664421 135688888888877 99888666543 433444433 47877433333343 44331 13
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+.|+++++. .++++.+||||+ ++.+..+.+.|||.+++||+|++++||...++.|++.+
T Consensus 177 ~lI~~I~e~-----~~vPVI~eGGI~TPsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 236 (265)
T 1wv2_A 177 YNLRIILEE-----AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 236 (265)
T ss_dssp HHHHHHHHH-----CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHHHHHHhc-----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 445555553 247888999999 89999999999999999999999999999998888744
|
| >2fds_A Orotidine-monophosphate-decarboxylase; TIM barrel, structural genomics, structural genomics consortium, SGC, unknown function; 1.72A {Plasmodium berghei} SCOP: c.1.2.3 PDB: 2aqw_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.8e-08 Score=91.16 Aligned_cols=172 Identities=13% Similarity=0.117 Sum_probs=95.1
Q ss_pred ccc-cCCHHHH-------HHcCcCCCCCeeEEEEecChhhHHHHH----HH-cCCCEEEEcccccccccHHHHHH-HHHH
Q 023494 98 PNI-TIGPLVV-------DALRPVTDLPLDVHLMIVEPEQRVPDF----IK-AGADIVSVHCEQSSTIHLHRTLN-QIKD 163 (281)
Q Consensus 98 pn~-~~G~~~I-------~~ir~~t~~~idaHLmv~dp~~~i~~~----~~-aGAd~Itvh~Ea~~~~~i~~~l~-~ik~ 163 (281)
+.+ .+|++.+ +.+|+. ++++.+|+|..|.+..++.+ ++ .|+|++|+|.-.. .+.++.+++ ..++
T Consensus 127 ~lf~~~G~~gv~~L~~~i~~lk~~-g~~VflDlK~~DIgnTv~~ya~a~~~~lgaD~vTVh~~~G-~~sl~~a~~~~a~~ 204 (352)
T 2fds_A 127 AFYIPYGSVGINALKNVFDYLNSM-NIPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMG-TSMLKDICFDYEKN 204 (352)
T ss_dssp GGTGGGTHHHHHHHHHHHHHHHHT-TCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-STTHHHHSEETTTT
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHC-CCeEEEEeecCchHHHHHHHHHHHHhhcCCCEEEEeCCCC-HHHHHHHHHHHhhc
Confidence 444 8899888 566654 79999999999997655443 45 6999999998763 455666654 3334
Q ss_pred cCCcEEEEECCCCCH-HHHHHhh--c-------cCCEEEEEeecCCCC---CC-cc-chh-HHHHHHHHHHHhhhcCCCC
Q 023494 164 LGAKAGVVLNPATSL-SAIECVL--D-------VVDLVLIMSVNPGFG---GQ-SF-IES-QVKKISDLRRMCLEKGVNP 227 (281)
Q Consensus 164 ~G~k~Glai~p~t~i-e~~~~~l--~-------~vD~IlvmsV~pG~~---GQ-~f-~~~-~l~kI~~lr~l~~~~~~~~ 227 (281)
+|..+-+.--.+.+- ..+++.. + .+|++.-+..+-|.+ ++ -+ .+. ..+.++.+|+..+ ++
T Consensus 205 ~gkgv~lLa~TSn~~~~dlq~~~~~~g~~l~~~v~~~v~~la~~~G~d~~~~~~GvVvGaTs~~e~~~iR~~~~----~~ 280 (352)
T 2fds_A 205 KYYSAYVLIKTTNKDSFIFQNELSINDKQAYIVMAEETQKMATDLKIDQNNEFIGFVVGSNAFEEMKIIRNKFP----DS 280 (352)
T ss_dssp EECEEEEEEECSSGGGHHHHTTCEETTEEHHHHHHHHHHHHHHHHTTGGGTCCEEEEECTTCHHHHHHHHHHST----TC
T ss_pred cCCceEEEEEeCCcCHHHHHHhhccCCCcHHHHHHHHHHHHHHHhCCCccCCcceEEEcCCCHHHHHHHHHhCC----CC
Confidence 444443322112121 2233210 0 012221111111111 00 00 001 1234455555543 34
Q ss_pred eE-----EEecCCChhcHHHH--HHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 228 WI-----EVDGGVGPKNAYKV--IEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 228 ~I-----~VDGGI~~e~i~~~--~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.+ ...||...+.+... .+.|+|++|+||+|++++||.++++++++.+.
T Consensus 281 ~iLtPGIGaqgGdq~rv~tp~~a~~~gadiIvVGR~I~~A~dp~~Aa~~i~~ei~ 335 (352)
T 2fds_A 281 YILSPGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQII 335 (352)
T ss_dssp CEEECCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred EEEcCccccccCcHHHhhCHHhHhhcCceEEEECHHHccCCCHHHHHHHHHHHHH
Confidence 44 45566554434333 57799999999999999999999999988653
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.47 E-value=3.2e-06 Score=76.11 Aligned_cols=182 Identities=16% Similarity=0.082 Sum_probs=116.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
-.+..+.+.+.|++++|+=-.|+ -..+.++++.+..+.|+.+.==+.+ . -++.++ +||+.|.+...+ .
T Consensus 40 p~~~A~~~~~~Ga~~l~vvDL~~-------~n~~~i~~i~~~~~~pv~vgGGir~-~-~~~~~l-~Ga~~Viigs~a--~ 107 (260)
T 2agk_A 40 SSYYAKLYKDRDVQGCHVIKLGP-------NNDDAAREALQESPQFLQVGGGIND-T-NCLEWL-KWASKVIVTSWL--F 107 (260)
T ss_dssp HHHHHHHHHHTTCTTCEEEEESS-------SCHHHHHHHHHHSTTTSEEESSCCT-T-THHHHT-TTCSCEEECGGG--B
T ss_pred HHHHHHHHHHcCCCEEEEEeCCC-------CCHHHHHHHHhcCCceEEEeCCCCH-H-HHHHHh-cCCCEEEECcHH--H
Confidence 34445677788999999844555 2467788887766677665433332 2 566677 999999998875 3
Q ss_pred cc-----HHHHHHHHHHcC-CcE--EEEEC---C-C--------------CCH-HHHHHhhccCCEEEEEeecC-CC-CC
Q 023494 152 IH-----LHRTLNQIKDLG-AKA--GVVLN---P-A--------------TSL-SAIECVLDVVDLVLIMSVNP-GF-GG 202 (281)
Q Consensus 152 ~~-----i~~~l~~ik~~G-~k~--Glai~---p-~--------------t~i-e~~~~~l~~vD~IlvmsV~p-G~-~G 202 (281)
.+ ++.+-+.+++.| -++ ++... . . +++ +.++.+.+.++.|+++.+.. |. .|
T Consensus 108 ~~~g~~~p~~~~~~~~~~g~~~ivv~iD~k~~~~~g~~V~~~gw~~~t~~~~~~e~a~~~~~~a~~il~t~i~~dG~~~G 187 (260)
T 2agk_A 108 TKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNKWQTLTDLELNADTFRELRKYTNEFLIHAADVEGLCGG 187 (260)
T ss_dssp CTTCCBCHHHHHHHHHHHCGGGEEEEEEEEEEETTEEEEEETTTTEEEEEEESHHHHHHHTTTCSEEEEEC-------CC
T ss_pred hhcCCCCHHHHHHHHHHhCcCcEEEEEEeeecCCCceEEEEcCCccccCccHHHHHHHHHHHhcCEEEEEeeccccCcCC
Confidence 45 655555566666 333 33332 1 0 234 66666666689999987754 33 23
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc--CCcEEEEcccc--cCC--CCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA--GANALVAGSAV--FGA--KDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a--GAD~~VvGSaI--f~a--~dp~~~~~~l~ 271 (281)
+ .++.++++++..+. ..++++.+-|||+ ++.+.++.+. |+|.+++||++ +.. -++.+..+.++
T Consensus 188 --~---d~eli~~l~~~~~~-~~~iPVIasGGi~s~ed~~~l~~~~~G~~gvivg~al~l~~g~~~~~~~~~~~~~ 257 (260)
T 2agk_A 188 --I---DELLVSKLFEWTKD-YDDLKIVYAGGAKSVDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRWNE 257 (260)
T ss_dssp --C---CHHHHHHHHHHHTT-CSSCEEEEESCCCCTHHHHHHHHHHTTCEEEECCTTBGGGTCSSBCHHHHHHHHH
T ss_pred --C---CHHHHHHHHHhhcc-cCCceEEEeCCCCCHHHHHHHHHhcCCCCEEEeeCCHHHcCCCCCCHHHHHHHHH
Confidence 2 35556666665410 0036898999998 8999999988 99999999996 643 35666665554
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=2.3e-06 Score=78.35 Aligned_cols=146 Identities=18% Similarity=0.319 Sum_probs=102.4
Q ss_pred CCCCeeEEEEecChhhHHH---HHHHcCCC---EEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCC
Q 023494 114 TDLPLDVHLMIVEPEQRVP---DFIKAGAD---IVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPAT 176 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~---~~~~aGAd---~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t 176 (281)
++.|+.+-+.-.+++.|.+ .+.++|+| .|.+|.-+. +.+.+.++++++|+. ++.+.+=+.|+.
T Consensus 92 ~~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~~~~ 171 (314)
T 2e6f_A 92 SKKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLSCPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMPPYF 171 (314)
T ss_dssp TTCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEECCCC
T ss_pred CCCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcCCCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 5789999988888887654 45678999 999986421 112356788888876 778888888876
Q ss_pred CHHHHHHhh----c-c-CCEEEEEe-------ecC--------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 177 SLSAIECVL----D-V-VDLVLIMS-------VNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 177 ~ie~~~~~l----~-~-vD~Ilvms-------V~p--------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
..+.+.++. + . +|+|.+.. +++ |..|....|..++.++++++..+ +++|
T Consensus 172 ~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~----~ipv 247 (314)
T 2e6f_A 172 DIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCP----DKLV 247 (314)
T ss_dssp CHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCT----TSEE
T ss_pred CHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcC----CCCE
Confidence 655543332 2 3 78776532 110 22333334666777888877651 4899
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccC-CCCH
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFG-AKDY 263 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~-a~dp 263 (281)
...|||+ .+++.+++++|||.+.+||+++. .++.
T Consensus 248 i~~GGI~~~~da~~~l~~GAd~V~ig~~~l~~~p~~ 283 (314)
T 2e6f_A 248 FGCGGVYSGEDAFLHILAGASMVQVGTALQEEGPGI 283 (314)
T ss_dssp EEESSCCSHHHHHHHHHHTCSSEEECHHHHHHCTTH
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEEchhhHhcCcHH
Confidence 9999997 89999999999999999999884 5543
|
| >2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.43 E-value=3.2e-06 Score=76.12 Aligned_cols=188 Identities=18% Similarity=0.187 Sum_probs=114.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-----h---HHHHHHH-cC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-----Q---RVPDFIK-AG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-----~---~i~~~~~-aG 138 (281)
-+.+.+...+.+...|++.+-+++.--. +.-.-+..+...|+ .++++-++.+ + ..+...+ .|
T Consensus 21 ky~~~~~~~~ai~asg~eivtva~rR~~--~~~~~~~~~~~~i~-------~~~~lpntaG~~taeeAv~~a~lare~~g 91 (268)
T 2htm_A 21 KYEDFGVMREAIAAAKAEVVTVSVRRVE--LKAPGHVGLLEALE-------GVRLLPNTAGARTAEEAVRLARLGRLLTG 91 (268)
T ss_dssp SCSCHHHHHHHHHHTTCSEEEEEEEECC---------CHHHHTT-------TSEEEEBCTTCCSHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHhCCCEEEEEccccC--CCCCCcccHHHHHh-------hhhccCcccCCCCHHHHHHHHHhhhHhcC
Confidence 4456666667778899999999854321 10122345566665 3444544443 2 2222333 36
Q ss_pred CCEEEE--ccccc-ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHH
Q 023494 139 ADIVSV--HCEQS-STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV 210 (281)
Q Consensus 139 Ad~Itv--h~Ea~-~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l 210 (281)
-++|-+ +.|.. -..++.+++++++.. |.++--..++ +++..+.+.+ .++.|+-++...|. |+.. .++.
T Consensus 92 t~~iKlEvi~d~~~l~pD~~~tv~aa~~L~k~Gf~Vlpy~~~--D~~~ak~l~~~G~~aVmPlg~pIGs-G~Gi~~~~~- 167 (268)
T 2htm_A 92 ERWVKLEVIPDPTYLLPDPLETLKAAERLIEEDFLVLPYMGP--DLVLAKRLAALGTATVMPLAAPIGS-GWGVRTRAL- 167 (268)
T ss_dssp CSEEBCCCCSCTTTTCCCHHHHHHHHHHHHHTTCEECCEECS--CHHHHHHHHHHTCSCBEEBSSSTTT-CCCSTTHHH-
T ss_pred cceeeeeeccCccccCcCHHHHHHHHHHHHHCCCEEeeccCC--CHHHHHHHHhcCCCEEEecCccCcC-CcccCCHHH-
Confidence 788653 33321 134678888888877 8776533332 3344444433 46777333333354 4433 2433
Q ss_pred HHHHHHHHHhhhcCCC-CeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVN-PWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~-~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
|+++++. ..+ +++.+||||. ++.+..+.+.|||.+++||+|++++||...++.|++.+
T Consensus 168 --L~~i~~~----~~~~vPVI~~GGI~tpsDAa~AmeLGAdgVlVgSAI~~a~dP~~ma~af~~Av 227 (268)
T 2htm_A 168 --LELFARE----KASLPPVVVDAGLGLPSHAAEVMELGLDAVLVNTAIAEAQDPPAMAEAFRLAV 227 (268)
T ss_dssp --HHHHHHT----TTTSSCBEEESCCCSHHHHHHHHHTTCCEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred --HHHHHHh----cCCCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHHHH
Confidence 4444431 124 6788999999 79999999999999999999999999999998888743
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=98.40 E-value=4.6e-06 Score=78.71 Aligned_cols=176 Identities=19% Similarity=0.260 Sum_probs=106.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe-cCh--hhHHHHHHHcCCCEEEEccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI-VEP--EQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-~dp--~~~i~~~~~aGAd~Itvh~E 147 (281)
+-+=++......|+..+| +++.| ..-.+.++.+|+... +.+-+.+ .++ .+.++.+.++|+|.|.++..
T Consensus 59 ~~~lA~avA~aGGlg~i~-----~~~s~--e~~~~~i~~vk~~~~--l~vga~vg~~~~~~~~~~~lieaGvd~I~idta 129 (366)
T 4fo4_A 59 EARLAIALAQEGGIGFIH-----KNMSI--EQQAAQVHQVKISGG--LRVGAAVGAAPGNEERVKALVEAGVDVLLIDSS 129 (366)
T ss_dssp SHHHHHHHHHTTCEEEEC-----SSSCH--HHHHHHHHHHHTTTS--CCCEEECCSCTTCHHHHHHHHHTTCSEEEEECS
T ss_pred hHHHHHHHHHcCCceEee-----cCCCH--HHHHHHHHHHHhcCc--eeEEEEeccChhHHHHHHHHHhCCCCEEEEeCC
Confidence 433334455567766665 33222 111234555555422 3333444 233 45788899999999998543
Q ss_pred ccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC-CCc----cchhHHHHHHHHHHH
Q 023494 148 QSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-GQS----FIESQVKKISDLRRM 219 (281)
Q Consensus 148 a~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~-GQ~----f~~~~l~kI~~lr~l 219 (281)
....+...+.++++|+. ++.+..- + -+..+..+.+.+ .+|+|.+ +..||.- +.. +-...+.-|.++++.
T Consensus 130 ~G~~~~~~~~I~~ik~~~p~v~Vi~G-~-v~t~e~A~~a~~aGAD~I~v-G~gpGs~~~tr~~~g~g~p~~~~l~~v~~~ 206 (366)
T 4fo4_A 130 HGHSEGVLQRIRETRAAYPHLEIIGG-N-VATAEGARALIEAGVSAVKV-GIGPGSICTTRIVTGVGVPQITAIADAAGV 206 (366)
T ss_dssp CTTSHHHHHHHHHHHHHCTTCEEEEE-E-ECSHHHHHHHHHHTCSEEEE-CSSCSTTBCHHHHHCCCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCceEee-e-eCCHHHHHHHHHcCCCEEEE-ecCCCCCCCcccccCcccchHHHHHHHHHH
Confidence 21123455678888876 5555432 1 134555666555 4999987 6667642 110 111234455666554
Q ss_pred hhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCC
Q 023494 220 CLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+. .++++..|||| +.+++.+++++|||.+.+||++...
T Consensus 207 ~~~--~~iPVIA~GGI~~~~di~kala~GAd~V~vGs~f~~t 246 (366)
T 4fo4_A 207 ANE--YGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT 246 (366)
T ss_dssp HGG--GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred Hhh--cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChHhhcC
Confidence 433 25789999999 5899999999999999999998864
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=4e-06 Score=76.57 Aligned_cols=142 Identities=16% Similarity=0.263 Sum_probs=98.2
Q ss_pred CCCeeEEEEecChhhHHH---HHHHcCCC-EEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCCCHH
Q 023494 115 DLPLDVHLMIVEPEQRVP---DFIKAGAD-IVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSLS 179 (281)
Q Consensus 115 ~~~idaHLmv~dp~~~i~---~~~~aGAd-~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie 179 (281)
+.|+.+.+.-.+++.|.+ .+.++|+| +|.+|.-+. +.+.+.++++++|+. ++.+.+=+.|+...+
T Consensus 93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~~~~ 172 (311)
T 1jub_A 93 EGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLV 172 (311)
T ss_dssp SSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHH
T ss_pred CCCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCHH
Confidence 688999888888887644 45788999 999986421 122346788888876 677888788876654
Q ss_pred HHHHh---hc--cCCEEEEEe-------ecC--------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 180 AIECV---LD--VVDLVLIMS-------VNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 180 ~~~~~---l~--~vD~Ilvms-------V~p--------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
.+.++ +. .+|.|.+.. +++ |..|....|..++.++++++... .+++|...|
T Consensus 173 ~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~---~~ipvi~~G 249 (311)
T 1jub_A 173 HFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLK---PEIQIIGTG 249 (311)
T ss_dssp HHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSC---TTSEEEEES
T ss_pred HHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcC---CCCCEEEEC
Confidence 44332 22 278886531 110 12243334555666776665432 258999999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||+ .+++.+++.+|||.+.+||+++.
T Consensus 250 GI~~~~da~~~l~~GAd~V~vg~~~l~ 276 (311)
T 1jub_A 250 GIETGQDAFEHLLCGATMLQIGTALHK 276 (311)
T ss_dssp SCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEEEchHHHh
Confidence 995 89999999999999999999884
|
| >1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 | Back alignment and structure |
|---|
Probab=98.33 E-value=1.4e-05 Score=74.56 Aligned_cols=192 Identities=15% Similarity=0.159 Sum_probs=125.7
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcc------cccccCCHHHHHHcCcC-CCCCeeEEEEecCh----hhHHHHHHHcC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRF------VPNITIGPLVVDALRPV-TDLPLDVHLMIVEP----EQRVPDFIKAG 138 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~f------vpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp----~~~i~~~~~aG 138 (281)
.+..+.++.|.++|+|+|++---||-+ .|...--.+.++.+++. ++.++.+ |+ .| .++++.+.++|
T Consensus 30 e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~--l~-~p~~~~~~~i~~a~~aG 106 (345)
T 1nvm_A 30 DDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIAT--LL-LPGIGSVHDLKNAYQAG 106 (345)
T ss_dssp HHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEE--EE-CBTTBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEE--Ee-cCCcccHHHHHHHHhCC
Confidence 344566778888999999883222211 12222234667777664 5555554 32 23 56899999999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
+|.+.+..-....+...+.++.+|++|+.+...+ .+.++.+.+.++.+. +|.|.+. +..|.....+..+
T Consensus 107 vd~v~I~~~~s~~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~Ga~~i~l~----DT~G~~~P~~v~~ 182 (345)
T 1nvm_A 107 ARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA----DSGGAMSMNDIRD 182 (345)
T ss_dssp CCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE----CTTCCCCHHHHHH
T ss_pred cCEEEEEEeccHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHCCCCEEEEC----CCcCccCHHHHHH
Confidence 9998887432123567889999999999998877 777888877777653 7877663 4455444445566
Q ss_pred HHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE---c-ccccCCCCHHHHHHHHH
Q 023494 212 KISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA---G-SAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv---G-SaIf~a~dp~~~~~~l~ 271 (281)
.++.+++..+ .+.+|.+ |-|....|.-..+++|||.+=. | +.=.++.+.++.+..|+
T Consensus 183 lv~~l~~~~~---~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~tv~GlG~~aGN~~le~lv~~L~ 247 (345)
T 1nvm_A 183 RMRAFKAVLK---PETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLAGMGAGAGNAPLEVFIAVAE 247 (345)
T ss_dssp HHHHHHHHSC---TTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSSTTCBCBHHHHHHHHH
T ss_pred HHHHHHHhcC---CCceEEEEECCCccHHHHHHHHHHHcCCCEEEecchhccCCccCcCHHHHHHHHH
Confidence 7777777653 1468888 7799999999999999987532 2 11123345555555544
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=98.32 E-value=1.8e-06 Score=81.35 Aligned_cols=122 Identities=22% Similarity=0.328 Sum_probs=82.6
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCC--
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQ-- 203 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ-- 203 (281)
+.++.+.++|+|.|+++........+.+.++++|+. ++.+..- +.. ..+..+.+.+ .+|+|.+ +.+||....
T Consensus 103 e~~~~a~~aGvdvI~id~a~G~~~~~~e~I~~ir~~~~~~~Vi~G-~V~-T~e~A~~a~~aGaD~I~V-g~g~G~~~~tr 179 (361)
T 3r2g_A 103 QRAEALRDAGADFFCVDVAHAHAKYVGKTLKSLRQLLGSRCIMAG-NVA-TYAGADYLASCGADIIKA-GIGGGSVCSTR 179 (361)
T ss_dssp HHHHHHHHTTCCEEEEECSCCSSHHHHHHHHHHHHHHTTCEEEEE-EEC-SHHHHHHHHHTTCSEEEE-CCSSSSCHHHH
T ss_pred HHHHHHHHcCCCEEEEeCCCCCcHhHHHHHHHHHHhcCCCeEEEc-CcC-CHHHHHHHHHcCCCEEEE-cCCCCcCcccc
Confidence 467888999999999975432233456788999986 5555541 223 3455555555 4999987 677764210
Q ss_pred ---cc-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 204 ---SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 204 ---~f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+ .| .+..|.++++. . . +|.+||||+ .+++.+++++|||.+.+||.++..
T Consensus 180 ~~~g~g~p-~l~aI~~~~~~---~--~-PVIAdGGI~~~~di~kALa~GAd~V~iGr~f~~t 234 (361)
T 3r2g_A 180 IKTGFGVP-MLTCIQDCSRA---D--R-SIVADGGIKTSGDIVKALAFGADFVMIGGMLAGS 234 (361)
T ss_dssp HHHCCCCC-HHHHHHHHTTS---S--S-EEEEESCCCSHHHHHHHHHTTCSEEEESGGGTTB
T ss_pred ccCCccHH-HHHHHHHHHHh---C--C-CEEEECCCCCHHHHHHHHHcCCCEEEEChHHhCC
Confidence 01 12 34444444322 1 1 888999996 899999999999999999999865
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=98.28 E-value=1.6e-05 Score=70.77 Aligned_cols=193 Identities=17% Similarity=0.169 Sum_probs=120.3
Q ss_pred EEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 63 SILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 63 Sila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
-.+..|+.+. .+...+.|+|++|+==.|+.+- .-....++++++.+.+..|+.+-==+.+.+ -++.++++|||.|
T Consensus 27 ~~~~~dP~~~---a~~~~~~gad~lhvvDld~a~~-~~~~~~~~i~~i~~~~~~pl~vGGGIrs~e-~~~~~l~~GadkV 101 (243)
T 4gj1_A 27 KVYKYNPLKK---FKEYEKAGAKELHLVDLTGAKD-PSKRQFALIEKLAKEVSVNLQVGGGIRSKE-EVKALLDCGVKRV 101 (243)
T ss_dssp EECCCCHHHH---HHHHHHHTCCEEEEEEHHHHHC-GGGCCHHHHHHHHHHCCSEEEEESSCCCHH-HHHHHHHTTCSEE
T ss_pred cEeCCCHHHH---HHHHHHCCCCEEEEEecCcccc-cchhHHHHHHHHHHhcCCCeEeccccccHH-HHHHHHHcCCCEE
Confidence 3455666554 4567778999999844454321 122345788888776667766654445533 5778889999999
Q ss_pred EEcccccccccHHHHHHHHHHcCCc---EEEEEC-------------CCC---CHHHHHHhhc-cCCEEEEEeecCCCCC
Q 023494 143 SVHCEQSSTIHLHRTLNQIKDLGAK---AGVVLN-------------PAT---SLSAIECVLD-VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 143 tvh~Ea~~~~~i~~~l~~ik~~G~k---~Glai~-------------p~t---~ie~~~~~l~-~vD~IlvmsV~pG~~G 202 (281)
.+-..+ ..++.-+-+.++++|.. +++... ..| ..+.++.+.+ .+.-|++.+++---..
T Consensus 102 ii~t~a--~~~p~li~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~t~Id~DGt~ 179 (243)
T 4gj1_A 102 VIGSMA--IKDATLCLEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILCTDISKDGTM 179 (243)
T ss_dssp EECTTT--TTCHHHHHHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEEEEETTC----
T ss_pred EEcccc--ccCCchHHHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEEeeeecccccc
Confidence 999875 45666566667777743 333321 011 2244444433 2677888777542122
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGI 270 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l 270 (281)
+-+.-+. ++++++..+ ++++.+.||++ .+++..+ +.+++.+++||+++.. =+.+++.+-+
T Consensus 180 ~G~d~~l---~~~l~~~~~----~ipviasGGv~~~~Dl~~l-~~~~~gvivg~Al~~g~i~l~ea~~~l 241 (243)
T 4gj1_A 180 QGVNVRL---YKLIHEIFP----NICIQASGGVASLKDLENL-KGICSGVIVGKALLDGVFSVEEGIRCL 241 (243)
T ss_dssp -CCCHHH---HHHHHHHCT----TSEEEEESCCCSHHHHHHT-TTTCSEEEECHHHHTTSSCHHHHHHHH
T ss_pred cCCCHHH---HHHHHHhcC----CCCEEEEcCCCCHHHHHHH-HccCchhehHHHHHCCCCCHHHHHHHh
Confidence 3344444 444444432 36888999998 8899886 6689999999999854 4677666554
|
| >2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=98.28 E-value=7.4e-06 Score=72.17 Aligned_cols=171 Identities=18% Similarity=0.206 Sum_probs=103.4
Q ss_pred HHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcC---cCCCCCeeEEEEecC-hh-------------hHHHHHHHc
Q 023494 77 KAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVE-PE-------------QRVPDFIKA 137 (281)
Q Consensus 77 ~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir---~~t~~~idaHLmv~d-p~-------------~~i~~~~~a 137 (281)
..+.++|+|.|++= ...|..+|. ..+++.++ +..++| +|.|+.- .+ +-++.+.++
T Consensus 15 ~~A~~~GAdRIELc~~L~~GGlTPS----~g~i~~~~~~~~~~~ip--V~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~ 88 (224)
T 2bdq_A 15 TRLDKAIISRVELCDNLAVGGTTPS----YGVIKEANQYLHEKGIS--VAVMIRPRGGNFVYNDLELRIMEEDILRAVEL 88 (224)
T ss_dssp GGCCTTTCCEEEEEBCGGGTCBCCC----HHHHHHHHHHHHHTTCE--EEEECCSSSSCSCCCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHcCCCEEEEcCCcccCCcCCC----HHHHHHHHHhhhhcCCc--eEEEECCCCCCCcCCHHHHHHHHHHHHHHHHc
Confidence 35567899999984 455778884 44566666 544544 5558852 21 124567899
Q ss_pred CCCEEEEcccccc-ccc---HHHHHHHHHHcCCcEEE--EECC---CCCHHHHHHhhcc-CCEEEEEeecCCCCCCcc--
Q 023494 138 GADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGV--VLNP---ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSF-- 205 (281)
Q Consensus 138 GAd~Itvh~Ea~~-~~~---i~~~l~~ik~~G~k~Gl--ai~p---~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f-- 205 (281)
|+|.|.|..-... .-+ .+++++.++ |+.+-+ ++.. ..+.+.++.+++. +|.||- . +|+.-
T Consensus 89 GadGvV~G~Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAFD~~~~~d~~~ale~L~~lGv~rILT--S----G~~~~~~ 160 (224)
T 2bdq_A 89 ESDALVLGILTSNNHIDTEAIEQLLPATQ--GLPLVFHMAFDVIPKSDQKKSIDQLVALGFTRILL--H----GSSNGEP 160 (224)
T ss_dssp TCSEEEECCBCTTSSBCHHHHHHHHHHHT--TCCEEECGGGGGSCTTTHHHHHHHHHHTTCCEEEE--C----SCSSCCC
T ss_pred CCCEEEEeeECCCCCcCHHHHHHHHHHhC--CCeEEEECchhccCCcCHHHHHHHHHHcCCCEEEC--C----CCCCCCc
Confidence 9999999976421 112 344444443 555433 3311 2345556655554 888872 2 33333
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHH-HcCCcEEEEccccc-CCCCHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAVF-GAKDYAE 265 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaIf-~a~dp~~ 265 (281)
..+.++.|+++.+.. +..+.|.+.||||++|++.+. +.|++-|= ||.|+ ++.||-+
T Consensus 161 a~~g~~~L~~Lv~~a---~~ri~Im~GgGV~~~Ni~~l~~~tGv~e~H-~s~i~~~~~~~~~ 218 (224)
T 2bdq_A 161 IIENIKHIKALVEYA---NNRIEIMVGGGVTAENYQYICQETGVKQAH-GTRITQMAGDPLE 218 (224)
T ss_dssp GGGGHHHHHHHHHHH---TTSSEEEECSSCCTTTHHHHHHHHTCCEEE-ETTCC--------
T ss_pred HHHHHHHHHHHHHhh---CCCeEEEeCCCCCHHHHHHHHHhhCCCEEc-cccccCCCCCcch
Confidence 566777777776653 235889999999999999997 68998776 45554 5566643
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=98.27 E-value=6.8e-06 Score=80.21 Aligned_cols=181 Identities=18% Similarity=0.173 Sum_probs=90.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---C------CCCeeEEEEec---ChhhHHHHHHHc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---T------DLPLDVHLMIV---EPEQRVPDFIKA 137 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t------~~~idaHLmv~---dp~~~i~~~~~a 137 (281)
..+.+.++.+.+.++..+.|==-+|.++ |.-..+.|.+. + +..+.+-..+. +..+.++.+.++
T Consensus 166 ~~l~ea~~~m~~~~i~~lpVVDe~g~lv-----GiIT~~Dil~~~~~p~a~kd~~grl~v~aavG~~~~~~~~a~~l~~a 240 (490)
T 4avf_A 166 TPLEEMKAKLYENRIEKMLVVDENFYLR-----GLVTFRDIEKAKTYPLASKDEQGRLRVGAAVGTGADTGERVAALVAA 240 (490)
T ss_dssp ----------------------------------------------CTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHcCCCEEEEEcCCCcEE-----EEEehHHhhhhccCcchhhhccCcceeeeeeccccchHHHHHHHhhc
Confidence 3566777777777776654411124333 33344444222 1 12333333443 334567788999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC-C----CccchhH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-G----QSFIESQ 209 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~-G----Q~f~~~~ 209 (281)
|+|.|.++..........+.++++++. ++.+.+- +. ...+..+.+.+ .+|+|.+ +.-||.. + ..+-...
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p~~~Vi~g-~v-~t~e~a~~l~~aGaD~I~v-g~g~Gs~~~t~~~~g~g~p~ 317 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFPDVQVIGG-NI-ATAEAAKALAEAGADAVKV-GIGPGSICTTRIVAGVGVPQ 317 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCTTSEEEEE-EE-CSHHHHHHHHHTTCSEEEE-CSSCSTTCHHHHHTCBCCCH
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCCCceEEEe-ee-CcHHHHHHHHHcCCCEEEE-CCCCCcCCCccccCCCCccH
Confidence 999999986543223456788888875 4444442 11 34556666655 4999986 3334321 0 0121224
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCC
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+.-|.++++...+ .+++|..|||| +.+++.+++++|||.+.+||++...
T Consensus 318 ~~~l~~v~~~~~~--~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~~ 367 (490)
T 4avf_A 318 ISAIANVAAALEG--TGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAGT 367 (490)
T ss_dssp HHHHHHHHHHHTT--TTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTTB
T ss_pred HHHHHHHHHHhcc--CCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhcC
Confidence 5556666665533 35889999999 5999999999999999999998863
|
| >1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A | Back alignment and structure |
|---|
Probab=98.21 E-value=2.1e-05 Score=70.53 Aligned_cols=165 Identities=17% Similarity=0.235 Sum_probs=103.9
Q ss_pred CHHHHHHHHHHcCCCeEEEE--eeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecC-hh-------------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVD--VMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVE-PE-------------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~d-p~-------------~~i~~~ 134 (281)
++++ ...+.++|+|.|++= ...|+.+|. ..+++.+++..++| +|.|+.. .+ +-++.+
T Consensus 10 s~~~-a~~A~~~GAdRIELc~~L~~GGlTPS----~g~i~~~~~~~~ip--v~vMIRPR~GdF~Ys~~E~~~M~~Di~~~ 82 (256)
T 1twd_A 10 SMEC-ALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQRVTIP--VHPIIRPRGGDFCYSDGEFAAILEDVRTV 82 (256)
T ss_dssp SHHH-HHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHHCCSC--EEEBCCSSSSCSCCCHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHHcCCc--eEEEECCCCCCCcCCHHHHHHHHHHHHHH
Confidence 4444 446667899999983 455778884 45567777666655 5558852 21 124567
Q ss_pred HHcCCCEEEEcccccc-ccc---HHHHHHHHHHcCCcEEE--EEC-CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGV--VLN-PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~-~~~---i~~~l~~ik~~G~k~Gl--ai~-p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~ 206 (281)
.++|+|+|.|..-... .-+ .+++++.++ |+.+-+ ++. ...+.+.++.+++ .+|.||- . +|++-.
T Consensus 83 ~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~--~~~vTFHRAfD~~~d~~~ale~L~~lG~~rILT--S----G~~~~a 154 (256)
T 1twd_A 83 RELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARVLT--S----GQKSDA 154 (256)
T ss_dssp HHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEE--C----TTSSST
T ss_pred HHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC--CCcEEEECchhccCCHHHHHHHHHHcCCCEEEC--C----CCCCCH
Confidence 8999999999976421 122 334444432 444332 221 1234555655555 3888872 2 334444
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
.+.++.|+++.+ ..+ .+.|-+.||||++|++.+.+.|++-|=.+
T Consensus 155 ~~g~~~L~~Lv~---~a~-~i~Im~GgGv~~~Ni~~l~~tGv~e~H~S 198 (256)
T 1twd_A 155 LQGLSKIMELIA---HRD-APIIMAGAGVRAENLHHFLDAGVLEVHSS 198 (256)
T ss_dssp TTTHHHHHHHHT---SSS-CCEEEEESSCCTTTHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHH---hhC-CcEEEecCCcCHHHHHHHHHcCCCeEeEC
Confidence 566666666654 334 68899999999999999999999988755
|
| >1hg3_A Triosephosphate isomerase; thermostability, tetrameric; 2.7A {Pyrococcus woesei} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=98.21 E-value=2.5e-05 Score=68.96 Aligned_cols=157 Identities=18% Similarity=0.211 Sum_probs=104.8
Q ss_pred HHHHHcCcCCCCCeeEEEEecChhh---H-----HHHHHHcCCCEEEEc-cc--ccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPEQ---R-----VPDFIKAGADIVSVH-CE--QSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~~---~-----i~~~~~aGAd~Itvh-~E--a~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
..+..+++..++|+.+. =.+|.. | +.++.++|||+|.+. .| . ...++.+.++.++++|+.+-+-+.
T Consensus 49 ~~L~~v~~~~~i~v~aQ--dv~~~~~Ga~TGeis~~~l~~~Ga~~VllghseRR~-~~~e~~~k~~~A~~~GL~~ivcVg 125 (225)
T 1hg3_A 49 VDLRMIAESVEIPVFAQ--HIDPIKPGSHTGHVLPEAVKEAGAVGTLLNHSENRM-ILADLEAAIRRAEEVGLMTMVCSN 125 (225)
T ss_dssp HHHHHHHHSCSSCBEES--CCCSCCSBSCTTCCCHHHHHHTTCCEEEESCGGGCC-BHHHHHHHHHHHHHHTCEEEEEES
T ss_pred HHHHHHHHhcCCceeee--eCCcccCCCccCcccHHHHHHcCCCEEEECcchhcC-CHHHHHHHHHHHHHCCCEEEEEeC
Confidence 34556665555565541 123321 1 778999999988775 44 2 234578889999999999999886
Q ss_pred CCCCHHHHHHhhc-cCCEEEEEeecCCC---CC---CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-cHHHHHH
Q 023494 174 PATSLSAIECVLD-VVDLVLIMSVNPGF---GG---QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-NAYKVIE 245 (281)
Q Consensus 174 p~t~ie~~~~~l~-~vD~IlvmsV~pG~---~G---Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-~i~~~~~ 245 (281)
- ..| .+.+.. ..++| .++|-. +| +.+.++.++...++.+.+.+ +..|.-.|||+.. ....+.+
T Consensus 126 e--~~e-~~~~~~~~~~iI---ayep~waiGtG~~v~t~~~d~~~~~~~~ir~~~~---~~~ilyggsV~~~n~~~~~~~ 196 (225)
T 1hg3_A 126 N--PAV-SAAVAALNPDYV---AVEPPELIGTGIPVSKAKPEVITNTVELVKKVNP---EVKVLCGAGISTGEDVKKAIE 196 (225)
T ss_dssp S--HHH-HHHHHTTCCSEE---EECCTTTTTTSCCTTTSCTHHHHHHHHHHHHHCT---TSEEEEESSCCSHHHHHHHHH
T ss_pred C--HHH-HHHHhcCCCCEE---EEeChhhhccCCCCCCCChhHHHHHHHHHHhccC---CCEEEEeCCCCcHHHHHHHHh
Confidence 3 222 222222 23444 456643 35 67877755554444333332 4678889999955 5567789
Q ss_pred cCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 246 AGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 246 aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
.|+|.+-+|+++.+++|+.+.++++.+.
T Consensus 197 ~~vDG~LVG~a~l~a~~~~~~i~~l~~~ 224 (225)
T 1hg3_A 197 LGTVGVLLASGVTKAKDPEKAIWDLVSG 224 (225)
T ss_dssp TTCSEEEESHHHHTCSSHHHHHHHHHHT
T ss_pred CCCCEEEeCHHHHCCcCHHHHHHHHHhh
Confidence 9999999999999999999999888654
|
| >1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-05 Score=73.03 Aligned_cols=94 Identities=19% Similarity=0.299 Sum_probs=68.9
Q ss_pred cHHHHHHHHHHcCC--cEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 153 HLHRTLNQIKDLGA--KAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 153 ~i~~~l~~ik~~G~--k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
++.+.++.+|++.. ++.+.+. .++++++.+. .+|+|++-. |.|+.+ +++.+.++..+.+++|
T Consensus 180 ~i~~av~~ar~~~~~~~I~Vev~---t~eea~eal~aGaD~I~LDn---------~~~~~~---~~~v~~l~~~~~~v~i 244 (284)
T 1qpo_A 180 SVVDALRAVRNAAPDLPCEVEVD---SLEQLDAVLPEKPELILLDN---------FAVWQT---QTAVQRRDSRAPTVML 244 (284)
T ss_dssp SHHHHHHHHHHHCTTSCEEEEES---SHHHHHHHGGGCCSEEEEET---------CCHHHH---HHHHHHHHHHCTTCEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEeC---CHHHHHHHHHcCCCEEEECC---------CCHHHH---HHHHHHhhccCCCeEE
Confidence 46678888888765 7888775 3677777666 499987632 444443 3334444332345799
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|++++.+.|+|++++|+.+.+++
T Consensus 245 eaSGGIt~~~i~~~a~tGVD~isvG~l~~~a~ 276 (284)
T 1qpo_A 245 ESSGGLSLQTAATYAETGVDYLAVGALTHSVR 276 (284)
T ss_dssp EEESSCCTTTHHHHHHTTCSEEECGGGTSSBC
T ss_pred EEECCCCHHHHHHHHhcCCCEEEECHHHcCCC
Confidence 99999999999999999999999999887654
|
| >3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=1.6e-05 Score=72.34 Aligned_cols=165 Identities=13% Similarity=0.085 Sum_probs=101.2
Q ss_pred HHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcCCCCCeeEEEE--ecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 75 QVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPVTDLPLDVHLM--IVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 75 ~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~t~~~idaHLm--v~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
.++.+.+.|.|.|-|. -+|. .|+.. =.++++++|+.+++|+..|.= +.|+... .-|||.+.|..-- +.
T Consensus 58 ~~~~~~~sGtDai~VG-S~~v--t~~~~~~~~~v~~ik~~~~lPvil~fPP~~g~~~~i-----~~~aDa~l~psvl-Ns 128 (286)
T 3vk5_A 58 KAAELTRLGFAAVLLA-STDY--ESFESHMEPYVAAVKAATPLPVVLHFPPRPGAGFPV-----VRGADALLLPALL-GS 128 (286)
T ss_dssp HHHHHHHTTCSCEEEE-CSCC--SSHHHHHHHHHHHHHHHCSSCEEEECCCBTTTBSCC-----CTTCSEEEEEEET-TB
T ss_pred HHHHHHhcCCCEEEEc-cCCC--CcchHHHHHHHHHHHHhCCCCEEEECCCCCCCcccc-----ccCCCEEEEEEEe-cC
Confidence 5677778899999886 4442 21111 235688888877888876543 1344322 3489999998553 23
Q ss_pred ccHHHHHHH---------H----HHcCCcE----EEEECCC------------CCHHHH--HHhhcc-C----CEEEEEe
Q 023494 152 IHLHRTLNQ---------I----KDLGAKA----GVVLNPA------------TSLSAI--ECVLDV-V----DLVLIMS 195 (281)
Q Consensus 152 ~~i~~~l~~---------i----k~~G~k~----Glai~p~------------t~ie~~--~~~l~~-v----D~Ilvms 195 (281)
.++.-++.. + +++| ++ .+.++++ ++.+.. ..|... . ++|. +
T Consensus 129 ~n~~~i~g~~~~~~aa~~v~~~~~~~g-e~ip~gYL~v~~g~k~V~fv~~~~~~~~e~A~~~aYa~~gad~G~~lV~-L- 205 (286)
T 3vk5_A 129 GDDYFVWKSFLETLAAFPGRIPREEWP-ELLLTVALTFGEDPRTGDLLGTVPVSTASTEEIDRYLHVARAFGFHMVY-L- 205 (286)
T ss_dssp SSHHHHTHHHHHHHHHCSTTSCGGGCC-EEEEEEEEECSCCHHHHHHHCBCCCCCSSSHHHHHHHHHHHHTTCSEEE-E-
T ss_pred CCcccccCcHHHHHHhHHHHHHHHHhC-CcceEEEEEECCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHcCCCEEE-E-
Confidence 334333333 4 6666 43 3567766 122332 333221 2 3443 3
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+-+ + .+...+.|+++++... .++++.|.|||+ .+.+.+++++|||.+|+||++++.
T Consensus 206 -D~~--~---~~v~~e~V~~I~~~~~---~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGSAav~d 262 (286)
T 3vk5_A 206 -YSR--N---EHVPPEVVRHFRKGLG---PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAGALEQP 262 (286)
T ss_dssp -ECS--S---SCCCHHHHHHHHHHSC---TTCEEEEESSCCSHHHHHHHHHTTCSEEEESGGGSST
T ss_pred -cCC--C---CcCCHHHHHHHHHhcC---CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECchhhcC
Confidence 222 2 2333455666666542 136899999998 899999999999999999999975
|
| >2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9 | Back alignment and structure |
|---|
Probab=98.17 E-value=4e-05 Score=69.56 Aligned_cols=194 Identities=16% Similarity=0.159 Sum_probs=129.3
Q ss_pred HHHHHHcCCCeEEEE-----eeeCc--ccccccCC------HHHHHHcCcC-CCCCeeEEEEecChh----hHHHHHHHc
Q 023494 76 VKAVELAGCDWIHVD-----VMDGR--FVPNITIG------PLVVDALRPV-TDLPLDVHLMIVEPE----QRVPDFIKA 137 (281)
Q Consensus 76 l~~l~~~G~d~iHiD-----ImDG~--fvpn~~~G------~~~I~~ir~~-t~~~idaHLmv~dp~----~~i~~~~~a 137 (281)
-+..+++|+|+|=+- =|.|. +.-.+.|| .++-+++-.. .+.|+.+-+--.||. .+++.+.++
T Consensus 41 Ak~~e~gGaDlii~ynsGrfR~~G~~slag~lpygnaN~iv~e~~~evlp~v~~iPV~Agv~~~DP~~~~g~~Le~lk~~ 120 (286)
T 2p10_A 41 AKSEEAGDIDLIVIYNSGRYRMAGRGSLAGLLAYGNANQIVVDMAREVLPVVRHTPVLAGVNGTDPFMVMSTFLRELKEI 120 (286)
T ss_dssp HHHHHHTTCSEEEECHHHHHHHTTCCGGGGGBTEEEHHHHHHHHHHHHGGGCSSSCEEEEECTTCTTCCHHHHHHHHHHH
T ss_pred hHHHHhCCCCEEEEeccchhhhcCccchhhhccccCHHHHHHHHHHhhhccCCCCCEEEEECCcCCCcCHHHHHHHHHHh
Confidence 456778999997442 12331 00011121 2223333332 367899986668996 467788999
Q ss_pred CCCEEEEcc--------------ccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC
Q 023494 138 GADIVSVHC--------------EQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG 201 (281)
Q Consensus 138 GAd~Itvh~--------------Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~ 201 (281)
|+..+.=|. |.. ......+.++.+++.|+..-+-.. ..+..+.... .+|+|.+ |||.+
T Consensus 121 Gf~Gv~N~ptvglidG~fr~~LEE~gm~~~~eve~I~~A~~~gL~Ti~~v~---~~eeA~amA~agpDiI~~---h~glT 194 (286)
T 2p10_A 121 GFAGVQNFPTVGLIDGLFRQNLEETGMSYAQEVEMIAEAHKLDLLTTPYVF---SPEDAVAMAKAGADILVC---HMGLT 194 (286)
T ss_dssp TCCEEEECSCGGGCCHHHHHHHHHTTCCHHHHHHHHHHHHHTTCEECCEEC---SHHHHHHHHHHTCSEEEE---ECSCC
T ss_pred CCceEEECCCcccccchhhhhHhhcCCCHHHHHHHHHHHHHCCCeEEEecC---CHHHHHHHHHcCCCEEEE---CCCCC
Confidence 999998888 642 133566888899999987655332 4455555554 5899865 67732
Q ss_pred -------CCc-cchhHHHHHHHHHHHhhhcCCCCeEEEec-CCC-hhcHHHHHHc--CCcEEEEcccccCCCCHHHHHHH
Q 023494 202 -------GQS-FIESQVKKISDLRRMCLEKGVNPWIEVDG-GVG-PKNAYKVIEA--GANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 202 -------GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDG-GI~-~e~i~~~~~a--GAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
+.. -..+..++++++.+...+-+.++.+-.-| ||+ ++.+..+++. |+|.|+.+|++-+.+ |++++.+
T Consensus 195 ~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvivLc~gGpIstpeDv~~~l~~t~G~~G~~gASsier~p-~e~ai~~ 273 (286)
T 2p10_A 195 TGGAIGARSGKSMDDCVSLINECIEAARTIRDDIIILSHGGPIANPEDARFILDSCQGCHGFYGASSMERLP-AEEAIRS 273 (286)
T ss_dssp ---------CCCHHHHHHHHHHHHHHHHHHCSCCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESHHHHHHH-HHHHHHH
T ss_pred CCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcEEEecCCCCCCHHHHHHHHhcCCCccEEEeehhhhcCC-HHHHHHH
Confidence 222 22444667777777777666677655555 887 8999999999 999999999999988 9988888
Q ss_pred HHHhcCc
Q 023494 270 IKTSKRP 276 (281)
Q Consensus 270 l~~~~~~ 276 (281)
+-+.++.
T Consensus 274 ~~~~fk~ 280 (286)
T 2p10_A 274 QTLAFKA 280 (286)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 7776553
|
| >1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5.9e-06 Score=75.43 Aligned_cols=93 Identities=16% Similarity=0.239 Sum_probs=69.1
Q ss_pred HHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+...++.+|+.. .++++... .++++++.+. .+|+|++-. |.++.+ +++.+.++..+.++++
T Consensus 179 i~~av~~ar~~~~~~~~I~VEV~---tleea~eA~~aGaD~I~LDn---------~~~e~l---~~av~~l~~~~~~v~i 243 (285)
T 1o4u_A 179 AERAVQEVRKIIPFTTKIEVEVE---NLEDALRAVEAGADIVMLDN---------LSPEEV---KDISRRIKDINPNVIV 243 (285)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEES---SHHHHHHHHHTTCSEEEEES---------CCHHHH---HHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHhCCCCceEEEEeC---CHHHHHHHHHcCCCEEEECC---------CCHHHH---HHHHHHhhccCCCceE
Confidence 566888888876 78888764 3666666655 599997632 444444 4444444432335799
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|++++.+.|+|++.+|+.+++++
T Consensus 244 eASGGIt~eni~~~a~tGVD~IsvGslt~sa~ 275 (285)
T 1o4u_A 244 EVSGGITEENVSLYDFETVDVISSSRLTLQEV 275 (285)
T ss_dssp EEEECCCTTTGGGGCCTTCCEEEEGGGTSSCC
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEeHHHcCCC
Confidence 99999999999999999999999999998764
|
| >1w0m_A TIM, triosephosphate isomerase; glycolysis, gluconeogenesis; 2.5A {Thermoproteus tenax} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=2.1e-05 Score=69.46 Aligned_cols=136 Identities=18% Similarity=0.185 Sum_probs=94.0
Q ss_pred HHHHHHcCCCEEEEc-cc--ccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC---CC--
Q 023494 131 VPDFIKAGADIVSVH-CE--QSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF---GG-- 202 (281)
Q Consensus 131 i~~~~~aGAd~Itvh-~E--a~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~---~G-- 202 (281)
+.++.++|||+|.+. .| . ...++.+.++.++++|+.+-+-+.-....+.+..+ ..++| .++|-. +|
T Consensus 78 ~~~l~~~Ga~~VllghseRR~-~~~e~~~k~~~A~~~GL~~ivcVge~~e~~~~~~~--~~~iI---ayep~waiGtG~~ 151 (226)
T 1w0m_A 78 LENIKEAGGSGVILNHSEAPL-KLNDLARLVAKAKSLGLDVVVCAPDPRTSLAAAAL--GPHAV---AVEPPELIGTGRA 151 (226)
T ss_dssp HHHHHHHTCCEEEECCTTSCC-BHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--CCSEE---EECCGGGTTTSCC
T ss_pred HHHHHHcCCCEEEEeeeeccC-CHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHhcC--CCCEE---EEcChhhhccCCC
Confidence 778999999987765 44 2 23457888999999999999988632222222221 23555 446632 35
Q ss_pred -CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 203 -QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 203 -Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.+.++.++...++.+.+. .+..|.-.|||+.. ....+.+.|+|.+-+|+++.+++|+.+.++++.+.+.
T Consensus 152 v~t~~~d~~~~~~~~ir~~~---~~~~ilyggsV~~~n~~~~~~~~giDG~LVG~a~l~a~~~~~~i~~l~~~~~ 223 (226)
T 1w0m_A 152 VSRYKPEAIVETVGLVSRHF---PEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLS 223 (226)
T ss_dssp HHHHCHHHHHHHHHHHHHHC---TTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred CCCCChhHHHHHHHHHHhcc---CCCEEEEeCCCCcHHHHHHHHhCCCCEEEECHHHHCCcCHHHHHHHHHHHHH
Confidence 4666665544444333332 24678889999955 5567789999999999999999999999998877543
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=98.14 E-value=4.7e-05 Score=70.27 Aligned_cols=151 Identities=19% Similarity=0.129 Sum_probs=98.0
Q ss_pred HHHHcCcC-CCCCeeEEEEecC-------hhhHHHHHH--HcCCCEEEEccccccc---------ccHHHHHHHHHHc--
Q 023494 106 VVDALRPV-TDLPLDVHLMIVE-------PEQRVPDFI--KAGADIVSVHCEQSST---------IHLHRTLNQIKDL-- 164 (281)
Q Consensus 106 ~I~~ir~~-t~~~idaHLmv~d-------p~~~i~~~~--~aGAd~Itvh~Ea~~~---------~~i~~~l~~ik~~-- 164 (281)
+++.+++. .+.++.+.+.-++ +..|.+.+. +.|+|+|.+|.-+... ..+.++++++|+.
T Consensus 123 ~~~~~~~~~~~~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~g~d~iein~~sP~~~g~~~~~~~~~~~~il~~vr~~~~ 202 (336)
T 1f76_A 123 LVENVKKAHYDGVLGINIGKNKDTPVEQGKDDYLICMEKIYAYAGYIAINISSPNTPGLRTLQYGEALDDLLTAIKNKQN 202 (336)
T ss_dssp HHHHHHHCCCCSEEEEEECCCTTSCGGGTHHHHHHHHHHHGGGCSEEEEECCCSSSTTGGGGGSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCcEEEEecCCCCCcccccHHHHHHHHHHHhccCCEEEEEccCCCCCCcccccCHHHHHHHHHHHHHHHH
Confidence 44555443 3457888887665 556655442 3489999999754110 1234677777764
Q ss_pred --------CCcEEEEECCCCCHHHHHHh----hc-cCCEEEEEeecCC---------------CCCCccchhHHHHHHHH
Q 023494 165 --------GAKAGVVLNPATSLSAIECV----LD-VVDLVLIMSVNPG---------------FGGQSFIESQVKKISDL 216 (281)
Q Consensus 165 --------G~k~Glai~p~t~ie~~~~~----l~-~vD~IlvmsV~pG---------------~~GQ~f~~~~l~kI~~l 216 (281)
++.+.+=++++...+.+.++ .+ .+|+|.+...-.+ ..|....+..++.++++
T Consensus 203 ~~~~~~g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn~~~~~~~~~~~~~~~~~gg~~g~~~~~~~~~~i~~i 282 (336)
T 1f76_A 203 DLQAMHHKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATNTTLDRSLVQGMKNCDQTGGLSGRPLQLKSTEIIRRL 282 (336)
T ss_dssp HHHHHHTSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECCCBCCCTTSTTSTTTTCSSEEEEGGGHHHHHHHHHHH
T ss_pred hhhhcccccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCcccccccccccccccCCCcCCchhHHHHHHHHHHH
Confidence 67788888887665443332 22 3899976422111 12222234566777788
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
++..+. +++|...|||+ .+.+.+++++|||.+-+||++..
T Consensus 283 ~~~~~~---~ipVi~~GGI~~~~da~~~l~~GAd~V~igr~~l~ 323 (336)
T 1f76_A 283 SLELNG---RLPIIGVGGIDSVIAAREKIAAGASLVQIYSGFIF 323 (336)
T ss_dssp HHHHTT---SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHH
T ss_pred HHHhCC---CCCEEEECCCCCHHHHHHHHHCCCCEEEeeHHHHh
Confidence 776532 47899999998 89999999999999999999663
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=4.5e-05 Score=74.58 Aligned_cols=124 Identities=19% Similarity=0.244 Sum_probs=85.5
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEE-EECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGV-VLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-- 201 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Gl-ai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~-- 201 (281)
.+.++.+.++|+|.|.+|.-........+.++++++. ++.+.+ .+ +..+..+.+.+ .+|+|.+ +.+||..
T Consensus 257 ~~~a~~~~~aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~~~pvi~~~v---~t~~~a~~l~~aGad~I~v-g~~~G~~~~ 332 (514)
T 1jcn_A 257 KYRLDLLTQAGVDVIVLDSSQGNSVYQIAMVHYIKQKYPHLQVIGGNV---VTAAQAKNLIDAGVDGLRV-GMGCGSICI 332 (514)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCCSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHHHHHHHTCSEEEE-CSSCSCCBT
T ss_pred HHHHHHHHHcCCCEEEeeccCCcchhHHHHHHHHHHhCCCCceEeccc---chHHHHHHHHHcCCCEEEE-CCCCCcccc
Confidence 3456778899999999987643122345788889887 777654 23 34666666655 4999988 7777631
Q ss_pred CCc---c---chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 202 GQS---F---IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 202 GQ~---f---~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
... + .+..+..+.++++ . .+++|..+|||+ .+++.+++.+|||.+.+||++...
T Consensus 333 t~~~~~~g~~~~~~~~~~~~~~~---~--~~ipVia~GGI~~~~di~kala~GAd~V~iG~~~l~~ 393 (514)
T 1jcn_A 333 TQEVMACGRPQGTAVYKVAEYAR---R--FGVPIIADGGIQTVGHVVKALALGASTVMMGSLLAAT 393 (514)
T ss_dssp TBCCCSCCCCHHHHHHHHHHHHG---G--GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTS
T ss_pred cccccCCCccchhHHHHHHHHHh---h--CCCCEEEECCCCCHHHHHHHHHcCCCeeeECHHHHcC
Confidence 000 1 1333444444443 2 247899999997 789999999999999999998764
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=98.12 E-value=3.7e-05 Score=76.14 Aligned_cols=189 Identities=14% Similarity=0.139 Sum_probs=115.7
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCccc--ccccCCHHHHHHcCcCCCCCeeEEEEecChh----------hHHHHHHHcCCC
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFV--PNITIGPLVVDALRPVTDLPLDVHLMIVEPE----------QRVPDFIKAGAD 140 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fv--pn~~~G~~~I~~ir~~t~~~idaHLmv~dp~----------~~i~~~~~aGAd 140 (281)
.+..+.+.+.|+|++|+==+|+..- ++-.-..+.++++++..+.|+.+-==+.+.. +-++.+.++|||
T Consensus 283 ~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~l~aGad 362 (555)
T 1jvn_A 283 VQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSGAD 362 (555)
T ss_dssp HHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhhCCCcEEEeCccccchhcccccchHHHHHHHHHHcCCC
Confidence 3455667788999999855565211 1112236778888776666665432334421 347788999999
Q ss_pred EEEEcccccccccH------------HHHHHHH-HHcCC-cEEEEECCC-------------------------------
Q 023494 141 IVSVHCEQSSTIHL------------HRTLNQI-KDLGA-KAGVVLNPA------------------------------- 175 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i------------~~~l~~i-k~~G~-k~Glai~p~------------------------------- 175 (281)
.|.+-..+. .++ .+.++++ +++|. ++.+++...
T Consensus 363 ~V~igt~~~--~~~~~~~~~~~~~~~~~~i~~~~~~~g~~~ivv~iD~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~ 440 (555)
T 1jvn_A 363 KVSIGTDAV--YAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQ 440 (555)
T ss_dssp EEEECHHHH--HHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEE
T ss_pred EEEECCHHh--hCchhhccccccccCHHHHHHHHHHhCCCcEEEEEEccccccccccccccccccccccCCCCCcceeEE
Confidence 999997652 111 1234433 45573 444444321
Q ss_pred ------------CCHHHHHHhhcc-CCEEEEEeecC-CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcH
Q 023494 176 ------------TSLSAIECVLDV-VDLVLIMSVNP-GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA 240 (281)
Q Consensus 176 ------------t~ie~~~~~l~~-vD~IlvmsV~p-G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i 240 (281)
+.++..+.+.+. ++.|++.++.. |.. +.+ .++.++++++.. ++++.+-|||+ ++.+
T Consensus 441 v~~~Gw~~~~~~~~~e~a~~~~~~Ga~~il~t~~~~dG~~-~G~---d~~li~~l~~~~-----~iPVIasGGi~s~~d~ 511 (555)
T 1jvn_A 441 CTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSN-SGY---DLELIEHVKDAV-----KIPVIASSGAGVPEHF 511 (555)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTC-SCC---CHHHHHHHHHHC-----SSCEEECSCCCSHHHH
T ss_pred EEEecCccCCCCCHHHHHHHHHHcCCCEEEEeCCCCCCCC-CCC---CHHHHHHHHHhC-----CccEEEECCCCCHHHH
Confidence 123555555444 89998876653 321 123 255566666543 47888999996 8999
Q ss_pred HHHHH-cCCcEEEEcccccCCC-CHHHHHHHHHH
Q 023494 241 YKVIE-AGANALVAGSAVFGAK-DYAEAIKGIKT 272 (281)
Q Consensus 241 ~~~~~-aGAD~~VvGSaIf~a~-dp~~~~~~l~~ 272 (281)
..+.+ .|+|.+++||+++..+ +..+..+.+++
T Consensus 512 ~~~~~~~G~~gvivg~a~~~~~~~~~e~~~~l~~ 545 (555)
T 1jvn_A 512 EEAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 545 (555)
T ss_dssp HHHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHHhcCChHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 99988 8999999999998764 55555544443
|
| >1nsj_A PRAI, phosphoribosyl anthranilate isomerase; thermostability; 2.00A {Thermotoga maritima} SCOP: c.1.2.4 PDB: 1lbm_A 1dl3_A | Back alignment and structure |
|---|
Probab=98.11 E-value=9e-05 Score=64.38 Aligned_cols=173 Identities=19% Similarity=0.197 Sum_probs=108.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCccccc-c-cCCHHHHHHcCcC-CCCCeeEEEEecChhh-HHHHHHHcCCCEEEEc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPN-I-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVH 145 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~-~i~~~~~aGAd~Itvh 145 (281)
.+. +.++.+.++|+|++=+- |.|. - ...++..++|.+. ++...-|=+.++.+.. ..+.+.+.+.|.|-+|
T Consensus 10 t~~-eda~~a~~~GaD~iGfi-----f~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLH 83 (205)
T 1nsj_A 10 TNL-EDALFSVESGADAVGFV-----FYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLH 83 (205)
T ss_dssp CSH-HHHHHHHHHTCSEEEEE-----CCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEEC
T ss_pred CcH-HHHHHHHHcCCCEEEEE-----ecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEEC
Confidence 344 45677778899997442 2232 1 3466777777543 3344445557765444 4556678899999999
Q ss_pred ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEEEeecC--CCCCCccchhHHHHHHHHHHHhhh
Q 023494 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLE 222 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~IlvmsV~p--G~~GQ~f~~~~l~kI~~lr~l~~~ 222 (281)
.+. ++ +.++.+|+ ++++.-++...+.. .+..+... +|++++=+-.| |-+|+.|.-+.+..+ + .
T Consensus 84 G~e----~~-~~~~~l~~-~~~vika~~v~~~~-~l~~~~~~~~d~~LlD~~~~~~GGtG~~fdw~~l~~~---~--~-- 149 (205)
T 1nsj_A 84 GEE----PI-ELCRKIAE-RILVIKAVGVSNER-DMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPY---R--D-- 149 (205)
T ss_dssp SCC----CH-HHHHHHHT-TSEEEEEEEESSHH-HHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGG---G--G--
T ss_pred CCC----CH-HHHHHHhc-CCCEEEEEEcCCHH-HHHHHHHcCCCEEEECCCCCCCCCCCCccCHHHHHhh---h--c--
Confidence 863 23 34455542 56666566554322 23332222 89998865544 667888876554321 0 1
Q ss_pred cCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC---CCHH
Q 023494 223 KGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 223 ~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a---~dp~ 264 (281)
...++.+.||+|++|+.++++ .++..+=+.|.+=.+ .|++
T Consensus 150 --~~~p~~LAGGL~peNV~~ai~~~~p~gVDvsSGvE~~pG~KD~~ 193 (205)
T 1nsj_A 150 --RFRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHD 193 (205)
T ss_dssp --GSSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEEETTEECHH
T ss_pred --CCCcEEEECCCCHHHHHHHHHhcCCCEEEECCceecCCCCcCHH
Confidence 124688999999999988765 699999999998632 4665
|
| >1v5x_A PRA isomerase, phosphoribosylanthranilate isomerase; alpha-beta barrel, TRPF, riken structural genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=98.10 E-value=0.00013 Score=63.28 Aligned_cols=168 Identities=16% Similarity=0.130 Sum_probs=106.5
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccccc-c-cCCHHHHHHcCcC-CCCCeeEEEEecChhh-HHHHHHHcCCCEEEEccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPN-I-TIGPLVVDALRPV-TDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn-~-~~G~~~I~~ir~~-t~~~idaHLmv~dp~~-~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+.++.+.++|+|++=+- |.|. - ...++..++|.+. ++...-|=+.++.+.. ..+.+.+.+.|.|-+|.+.
T Consensus 12 eda~~a~~~GaD~iGfi-----f~~~SpR~V~~~~a~~i~~~~~~~~~~VgVfvn~~~~~i~~~~~~~~ld~vQLHG~e- 85 (203)
T 1v5x_A 12 EDALLAEALGAFALGFV-----LAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLHGEE- 85 (203)
T ss_dssp HHHHHHHHHTCSEEEEE-----CCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEECSCC-
T ss_pred HHHHHHHHcCCCEEEEE-----ecCCCCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhhCCCEEEECCCC-
Confidence 45677778899997442 2232 1 3366777777543 3334445557765444 4556678899999999863
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHH-HHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLS-AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
++ +.++.++ .|+++.-++......+ .+..+. +|++++=+ ..|-+|+.|.-+.+..+ . .. +.+
T Consensus 86 ---~~-~~~~~l~-~~~~vika~~v~~~~~l~~~~~~--~d~~LlD~-~~gGtG~~fdW~~l~~~--~----~~---~~p 148 (203)
T 1v5x_A 86 ---PP-EWAEAVG-RFYPVIKAFPLEGPARPEWADYP--AQALLLDG-KRPGSGEAYPRAWAKPL--L----AT---GRR 148 (203)
T ss_dssp ---CH-HHHHHHT-TTSCEEEEEECSSSCCGGGGGSS--CSEEEEEC-SSTTSCCCCCGGGGHHH--H----HT---TSC
T ss_pred ---CH-HHHHHhc-cCCCEEEEEEcCChHhhhhhhcC--CCEEEEcC-CCCCCCCccCHHHHHhh--h----cc---CCc
Confidence 23 3444443 2677776666544322 222222 89998743 23667888876655432 1 11 246
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCC---CCHH
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a---~dp~ 264 (281)
+.+.||+|++|+.+++..++..+=+.|.+=.+ .|++
T Consensus 149 ~~LAGGL~peNV~~ai~~~p~gVDvsSGvE~~pG~KD~~ 187 (203)
T 1v5x_A 149 VILAGGIAPENLEEVLALRPYALDLASGVEEAPGVKSAE 187 (203)
T ss_dssp EEECSSCCSTTHHHHHHHCCSEEEESGGGEEETTEECHH
T ss_pred EEEECCCCHHHHHHHHhcCCCEEEeCCceecCCCCcCHH
Confidence 88999999999988777799999999998632 4665
|
| >3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-05 Score=70.98 Aligned_cols=173 Identities=12% Similarity=0.156 Sum_probs=109.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHc-CcCCCCCeeEEEEecCh-----h-----hHHHHHHHcC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL-RPVTDLPLDVHLMIVEP-----E-----QRVPDFIKAG 138 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~i-r~~t~~~idaHLmv~dp-----~-----~~i~~~~~aG 138 (281)
.++.+.+..+. .|+|-+-+ ..| +++.. +...+.++.+||=-.++ . .-++.+.+.|
T Consensus 73 ~~~~~~i~~l~-~g~dav~~-----------~~G--~~~~~~~~~~~~~lil~l~~~t~~~~~~~~~~l~~~ve~Av~~G 138 (295)
T 3glc_A 73 ERIDINIAPLF-EHADVLMC-----------TRG--ILRSVVPPATNRPVVLRASGANSILAELSNEAVALSMDDAVRLN 138 (295)
T ss_dssp TTHHHHTGGGG-GGCSEEEE-----------CHH--HHHHHSCGGGCCCEEEECEECCCTTSCTTCCEECSCHHHHHHTT
T ss_pred hhhHHHHHHhh-cCCCEEEE-----------CHh--HHhhhccccCCccEEEEEcCCCcCCCCCccchhHHHHHHHHHCC
Confidence 35655555543 35766532 122 33333 33346788888865442 1 1378889999
Q ss_pred CCEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECC----CCCHHHHH---Hhhc--cCCEEEEEeecCCCCCC
Q 023494 139 ADIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNP----ATSLSAIE---CVLD--VVDLVLIMSVNPGFGGQ 203 (281)
Q Consensus 139 Ad~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p----~t~ie~~~---~~l~--~vD~IlvmsV~pG~~GQ 203 (281)
||.|.+|.--.+ .+++.++.+.++++|+.+.+...+ .++.+.+. .+.. .+|+|=.- .| +
T Consensus 139 AdaV~~~i~~Gs~~~~~~l~~i~~v~~~a~~~GlpvIie~~~G~~~~~d~e~i~~aariA~elGAD~VKt~--~t---~- 212 (295)
T 3glc_A 139 SCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVGKDMVRDQRYFSLATRIAAEMGAQIIKTY--YV---E- 212 (295)
T ss_dssp CSEEEEEECTTSTTHHHHHHHHHHHHHHHHTTTCCEEEEECC----CCSHHHHHHHHHHHHHTTCSEEEEE--CC---T-
T ss_pred CCEEEEEEECCCCcHHHHHHHHHHHHHHHHHcCCEEEEECCCCCccCCCHHHHHHHHHHHHHhCCCEEEeC--CC---H-
Confidence 999999955221 223557788888899887664322 13333222 2222 37987542 22 2
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+.+ +++.+. ..+++.+-||++.+ .+..++++||+.+++||+||+++||.+.++.+++.+
T Consensus 213 ----e~~---~~vv~~-----~~vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~vGRnI~q~~dp~~~~~al~~iv 277 (295)
T 3glc_A 213 ----KGF---ERIVAG-----CPVPIVIAGGKKLPEREALEMCWQAIDQGASGVDMGRNIFQSDHPVAMMKAVQAVV 277 (295)
T ss_dssp ----TTH---HHHHHT-----CSSCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred ----HHH---HHHHHh-----CCCcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEeHHHHhcCcCHHHHHHHHHHHH
Confidence 223 333332 23688899999853 688889999999999999999999999999988754
|
| >2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=1.2e-05 Score=72.95 Aligned_cols=93 Identities=13% Similarity=0.148 Sum_probs=66.4
Q ss_pred HHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+.. .++++... |. +++.+.++ .+|+|.+.+ |.++ .++++++.++....+++|
T Consensus 168 ~~~ai~~~r~~~~~~~~i~vev~--tl-ee~~~A~~aGaD~I~ld~---------~~~~---~l~~~v~~l~~~~~~~~i 232 (273)
T 2b7n_A 168 LKSFLTHARKNLPFTAKIEIECE--SF-EEAKNAMNAGADIVMCDN---------LSVL---ETKEIAAYRDAHYPFVLL 232 (273)
T ss_dssp HHHHHHHHGGGSCTTCCEEEEES--SH-HHHHHHHHHTCSEEEEET---------CCHH---HHHHHHHHHHHHCTTCEE
T ss_pred HHHHHHHHHHhCCCCceEEEEcC--CH-HHHHHHHHcCCCEEEECC---------CCHH---HHHHHHHHhhccCCCcEE
Confidence 567788888764 47788664 33 44444333 599998743 2344 444444555443345799
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.|||+++|+.++.++|||.+.+||.+++++
T Consensus 233 ~AsGGI~~~ni~~~~~aGaD~i~vGs~i~~a~ 264 (273)
T 2b7n_A 233 EASGNISLESINAYAKSGVDAISVGALIHQAT 264 (273)
T ss_dssp EEESSCCTTTHHHHHTTTCSEEECTHHHHTCC
T ss_pred EEECCCCHHHHHHHHHcCCcEEEEcHHhcCCC
Confidence 99999999999999999999999999998653
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=0.0001 Score=72.31 Aligned_cols=184 Identities=16% Similarity=0.197 Sum_probs=111.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-C------CCCCeeEEEEec-ChhhHHHHHHHcCCCE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-V------TDLPLDVHLMIV-EPEQRVPDFIKAGADI 141 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~------t~~~idaHLmv~-dp~~~i~~~~~aGAd~ 141 (281)
..+.+.++.+.+.++..+.|==-+|.++=.++. .++++.+.. . ....+-+-.-+. +..+.++.+.++|+|.
T Consensus 193 ~~l~eal~~m~~~~i~~lpVVDe~g~l~GiIT~-~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~ 271 (511)
T 3usb_A 193 TTLSEAEKILQKYKIEKLPLVDNNGVLQGLITI-KDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDA 271 (511)
T ss_dssp CCHHHHHHHHHHHTCSEEEEECTTSBEEEEEEH-HHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSE
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCEeeeccH-HHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccce
Confidence 478999999999999987652122443322222 244444422 0 112222222222 3234567789999999
Q ss_pred EEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC-C----CccchhHHHHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-G----QSFIESQVKKI 213 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~-G----Q~f~~~~l~kI 213 (281)
+.+...........+.++++++. +..+.+ -+- ...+..+.+.+ .+|.|.+ +..||.- . ..+-...+.-+
T Consensus 272 I~Id~a~g~~~~v~~~i~~i~~~~~~~~vi~-g~v-~t~e~a~~~~~aGad~i~v-g~g~gsi~~~~~~~g~g~p~~~~l 348 (511)
T 3usb_A 272 IVLDTAHGHSQGVIDKVKEVRAKYPSLNIIA-GNV-ATAEATKALIEAGANVVKV-GIGPGSICTTRVVAGVGVPQLTAV 348 (511)
T ss_dssp EEEECSCTTSHHHHHHHHHHHHHCTTSEEEE-EEE-CSHHHHHHHHHHTCSEEEE-CSSCSTTCCHHHHHCCCCCHHHHH
T ss_pred EEecccccchhhhhhHHHHHHHhCCCceEEe-eee-ccHHHHHHHHHhCCCEEEE-CCCCccccccccccCCCCCcHHHH
Confidence 99965532123456778888876 344443 121 24555666555 4899986 4445430 0 01212234556
Q ss_pred HHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.++++..++ .+++|.+||||. .+.+.+++++|||.+.+||++..
T Consensus 349 ~~v~~~~~~--~~iPVIa~GGI~~~~di~kala~GA~~V~vGs~~~~ 393 (511)
T 3usb_A 349 YDCATEARK--HGIPVIADGGIKYSGDMVKALAAGAHVVMLGSMFAG 393 (511)
T ss_dssp HHHHHHHHT--TTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred HHHHHHHHh--CCCcEEEeCCCCCHHHHHHHHHhCchhheecHHHhc
Confidence 666665543 357899999996 88999999999999999999864
|
| >4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* | Back alignment and structure |
|---|
Probab=98.08 E-value=4.1e-05 Score=71.89 Aligned_cols=196 Identities=16% Similarity=0.244 Sum_probs=131.0
Q ss_pred eEEEeccCcc-CHHHHHHHHHHcCCCeEEEEee-----eCccccc-----------cc---CCHHH-HHHc---CcCCCC
Q 023494 61 SPSILSANFA-KLGEQVKAVELAGCDWIHVDVM-----DGRFVPN-----------IT---IGPLV-VDAL---RPVTDL 116 (281)
Q Consensus 61 ~pSila~D~~-~l~~~l~~l~~~G~d~iHiDIm-----DG~fvpn-----------~~---~G~~~-I~~i---r~~t~~ 116 (281)
.|-++++=+. +-.+.++.+...|...+.+-=. .|+=-|. +. .|.+. ++.+ ++..+.
T Consensus 48 NPv~lAAG~~~~~~e~~~~l~~~G~G~v~~ktvt~~pq~GNp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~ 127 (354)
T 4ef8_A 48 NPFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKK 127 (354)
T ss_dssp SSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHHHTCCTTTC
T ss_pred CCCEeccCCCCCCHHHHHHHHHcCCCeEEeCcccCcccCCCCCCcEEecchhhhccCCCCCcCHHHHHHHHHHHhhcCCC
Confidence 4666666555 4457788888888888776411 2221121 11 24443 3344 334568
Q ss_pred CeeEEEEecChhhHHHH---HH---HcCCCEEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCCCHH
Q 023494 117 PLDVHLMIVEPEQRVPD---FI---KAGADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSLS 179 (281)
Q Consensus 117 ~idaHLmv~dp~~~i~~---~~---~aGAd~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie 179 (281)
|+.+-+.-.+|+.|.+. +. +.|+|+|.+..-+. ..+.+.++++++++. .+-+.+=+.|+.+.+
T Consensus 128 pvivsI~G~~~~d~~~~a~~l~~~~~~g~d~ielNisCPn~~gg~~l~~~~e~~~~il~av~~~~~~PV~vKi~p~~d~~ 207 (354)
T 4ef8_A 128 PLFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFA 207 (354)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECSSCCSTTSCCGGGSHHHHHHHHHHHHHHCCSCEEEEECCCCSHH
T ss_pred cEEEEeccCCHHHHHHHHHHHhhhhhcCCCEEEEeCCCCCCCCchhhccCHHHHHHHHHHHHHhhCCCeEEEecCCCCHH
Confidence 99999988999987553 33 46899999886431 123466788888875 677888899988776
Q ss_pred HHHHhhc------cCCEEEE-------Eeec--C------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 180 AIECVLD------VVDLVLI-------MSVN--P------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 180 ~~~~~l~------~vD~Ilv-------msV~--p------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
.+.++.+ .+|.|.+ |.++ . |.+|....|..++.|+++++.. .+++|...
T Consensus 208 ~~~~~a~~~~~~Gg~d~I~~~NT~~~g~~idi~~~~~~~~~~~~~gGlSG~~i~p~a~~~i~~v~~~~----~~ipII~~ 283 (354)
T 4ef8_A 208 HFDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRC----PGKLIFGC 283 (354)
T ss_dssp HHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHC----TTSEEEEE
T ss_pred HHHHHHHHHHhCCCccEEEEecccCcceeeeccCCccccccccccCCCCCCCCchHHHHHHHHHHHhC----CCCCEEEE
Confidence 6655543 2777754 1222 1 1234444567788888877652 24899999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
|||. .+.+.+++.+|||.+-+||+++..
T Consensus 284 GGI~s~~da~~~l~aGAd~V~vgra~l~~ 312 (354)
T 4ef8_A 284 GGVYTGEDAFLHVLAGASMVQVGTALQEE 312 (354)
T ss_dssp SCCCSHHHHHHHHHHTEEEEEECHHHHHH
T ss_pred CCcCCHHHHHHHHHcCCCEEEEhHHHHHh
Confidence 9998 889999999999999999998753
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=98.05 E-value=3.1e-05 Score=72.36 Aligned_cols=142 Identities=11% Similarity=0.174 Sum_probs=92.7
Q ss_pred CCCCeeEEEEecChhhHHH---HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHHc-CCcEEEEECC
Q 023494 114 TDLPLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKDL-GAKAGVVLNP 174 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~~-G~k~Glai~p 174 (281)
.+.++.+.|...+|..|.+ .+.++|+|.|-+|.-+. ..+.+.++++.+++. ++.+.+-+.+
T Consensus 56 ~~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~ 135 (350)
T 3b0p_A 56 EEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRL 135 (350)
T ss_dssp GGCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEES
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEec
Confidence 4689999999999987754 45678999999996431 012355677888774 7777775544
Q ss_pred CC----C----HHHHHHhhc-cCCEEEEEeecC--CCCCCc---cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhc
Q 023494 175 AT----S----LSAIECVLD-VVDLVLIMSVNP--GFGGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKN 239 (281)
Q Consensus 175 ~t----~----ie~~~~~l~-~vD~IlvmsV~p--G~~GQ~---f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~ 239 (281)
+. . .+..+.+.+ .+|+|.+.+... |+.|.. ..+..++.++++++..+ +++|.+.|||+ .+.
T Consensus 136 g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~----~iPVianGgI~s~ed 211 (350)
T 3b0p_A 136 GLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFP----QLTFVTNGGIRSLEE 211 (350)
T ss_dssp CBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCT----TSEEEEESSCCSHHH
T ss_pred CcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCC----CCeEEEECCcCCHHH
Confidence 32 1 122233322 389998754332 333321 11234666777776542 47899999995 899
Q ss_pred HHHHHHcCCcEEEEcccccCC
Q 023494 240 AYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 240 i~~~~~aGAD~~VvGSaIf~a 260 (281)
+.++++ |||.+.+||+++..
T Consensus 212 a~~~l~-GaD~V~iGRa~l~~ 231 (350)
T 3b0p_A 212 ALFHLK-RVDGVMLGRAVYED 231 (350)
T ss_dssp HHHHHT-TSSEEEECHHHHHC
T ss_pred HHHHHh-CCCEEEECHHHHhC
Confidence 999998 99999999987643
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=98.05 E-value=5.5e-05 Score=64.43 Aligned_cols=185 Identities=20% Similarity=0.195 Sum_probs=105.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+..+.++.+.+.+.|.+=+|+.= |. .-|.++++.||+. +..++-+-+...+ ......+.++|++.+..-....
T Consensus 13 ~~~~a~~~~~~~~~dlvl~D~~~----p~-~~g~~~~~~l~~~~~~~~i~vi~~~~~-~~~~~~~~~~Ga~~~l~kp~~~ 86 (237)
T 3cwo_X 13 NGREAVEKYKELKPDIVTMDITM----PE-MNGIDAIKEIMKIDPNAKIIVCSAMGQ-QAMVIEAIKAGAKDFIVNTAAV 86 (237)
T ss_dssp SSSTTHHHHHHHCCSCEEEECCS----TT-SSHHHHHHHHHHHSSSCCEEEECCSST-HHHHHHHHHTTCCEEEESHHHH
T ss_pred CHHHHHHHHHhcCCCEEEEeCCC----CC-CCHHHHHHHHHHhCCCCCEEEEECCCC-HHHHHHHHHCCHHheEeCCccc
Confidence 34455666666678876566432 32 2267888888764 3333333222233 4467788899999887664100
Q ss_pred ccccHHHHHHHHHHcCCc-EEEEECC-------------------CCCHHHHHHhhcc-CCEEEEEee-cCCCCCCccch
Q 023494 150 STIHLHRTLNQIKDLGAK-AGVVLNP-------------------ATSLSAIECVLDV-VDLVLIMSV-NPGFGGQSFIE 207 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k-~Glai~p-------------------~t~ie~~~~~l~~-vD~IlvmsV-~pG~~GQ~f~~ 207 (281)
....+...+.. ..+.+ ..+.+.. .+..+.++.+... +..|+++++ ..|. +..+.
T Consensus 87 ~~~~l~~~i~~--~~~~~~~~~~~d~~~~~~~~~v~~~~g~~~~~~~~~~~i~~~~~~~~~~vli~~~~~~g~-~~g~~- 162 (237)
T 3cwo_X 87 ENPSLITQIAQ--TFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGT-KSGYD- 162 (237)
T ss_dssp HCTHHHHHHHH--HHTGGGEEEEEEEEESSSCEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTC-CSCCC-
T ss_pred ChHHHHHHHHH--HhCCCceEEEeeecccCCcEEEEEeCCccccccCHHHHHHHHhhcCCCeEEEEecCCCCc-ccccc-
Confidence 01222222222 22322 2222211 1233444544432 566777765 3343 22232
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc-CCCCHHHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF-GAKDYAEAIKGIKT 272 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf-~a~dp~~~~~~l~~ 272 (281)
.+.|+++++. .+.++.+-||++ ++++.++.++|+|.+++||+++ +..++.+..+.+++
T Consensus 163 --~~~i~~~~~~-----~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~l~~ 222 (237)
T 3cwo_X 163 --TEMIRFVRPL-----TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 222 (237)
T ss_dssp --HHHHHHHGGG-----CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHHHHT
T ss_pred --HHHHHHHHHh-----cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHHHHH
Confidence 4445554433 246777888887 8999999999999999999995 55688877776664
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=98.04 E-value=9.1e-05 Score=70.60 Aligned_cols=127 Identities=20% Similarity=0.318 Sum_probs=84.2
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc-CCcEEE-EECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--C
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGV-VLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--G 202 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Gl-ai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--G 202 (281)
.++++.+.++|+|.|.+-..........+.++.+|+. ++.+.+ .+ +..+..+.+.+ .+|+|.+ +..||-- .
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V---~t~e~A~~a~~aGAD~I~v-G~g~Gs~~~t 221 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNV---VTEEATKELIENGADGIKV-GIGPGSICTT 221 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEE---CSHHHHHHHHHTTCSEEEE-CC--------
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeec---CCHHHHHHHHHcCCCEEEE-eCCCCcCccc
Confidence 5678999999999998733221123456778888875 777665 23 34666666655 4999987 4445421 1
Q ss_pred C---ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 203 Q---SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 203 Q---~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
. .+-...+.-|.++++...+ .+++|..+|||. .+++..++++|||.+.+||++...
T Consensus 222 r~~~g~g~p~~~al~~v~~~~~~--~~IPVIA~GGI~~~~di~kalalGAd~V~vGt~f~~t 281 (400)
T 3ffs_A 222 RIVAGVGVPQITAIEKCSSVASK--FGIPIIADGGIRYSGDIGKALAVGASSVMIGSILAGT 281 (400)
T ss_dssp -CCSCBCCCHHHHHHHHHHHHTT--TTCCEEEESCCCSHHHHHHHHTTTCSEEEECGGGTTB
T ss_pred ccccccchhHHHHHHHHHHHHHh--cCCCEEecCCCCCHHHHHHHHHcCCCEEEEChHHhcC
Confidence 1 0111234556666655432 358899999996 899999999999999999998864
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=8.3e-05 Score=69.09 Aligned_cols=142 Identities=15% Similarity=0.068 Sum_probs=93.7
Q ss_pred CCCCeeEEEEe-cChhhHHHHHHHcCCCEEEEcccccc-------c---ccHHHHHHHHHHc-CCcEEEEE-CCCCCHHH
Q 023494 114 TDLPLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSS-------T---IHLHRTLNQIKDL-GAKAGVVL-NPATSLSA 180 (281)
Q Consensus 114 t~~~idaHLmv-~dp~~~i~~~~~aGAd~Itvh~Ea~~-------~---~~i~~~l~~ik~~-G~k~Glai-~p~t~ie~ 180 (281)
++.|+-+.+.. .++..+.+.+.++|+|.+.+|..... . ....+.++++++. ++.+.+-+ .+....+.
T Consensus 115 ~~~pv~~~i~~~~~~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~~~ 194 (349)
T 1p0k_A 115 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKAS 194 (349)
T ss_dssp SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHH
T ss_pred CCceeEEeecCCCCHHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCHHH
Confidence 56788888773 56665555566789999999976310 0 1255778888864 66677654 44455666
Q ss_pred HHHhhc-cCCEEEEEeecCCC--------CC-------CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHH
Q 023494 181 IECVLD-VVDLVLIMSVNPGF--------GG-------QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 243 (281)
Q Consensus 181 ~~~~l~-~vD~IlvmsV~pG~--------~G-------Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~ 243 (281)
.+...+ .+|.|.+- .+.|. .. ...-+.+.+.|+++++.. .+++|.++|||. .+++.++
T Consensus 195 a~~a~~~Gad~I~v~-~~ggt~~~~~e~~r~~~~~~~~~~~g~~~~~~l~~v~~~~----~~ipvia~GGI~~~~d~~k~ 269 (349)
T 1p0k_A 195 AGKLYEAGAAAVDIG-GYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF----PASTMIASGGLQDALDVAKA 269 (349)
T ss_dssp HHHHHHHTCSEEEEE-C---------------CCGGGGTTCSCCHHHHHHHHHHHC----TTSEEEEESSCCSHHHHHHH
T ss_pred HHHHHHcCCCEEEEc-CCCCcchhhHHHhhcccchhhhhccCccHHHHHHHHHHhc----CCCeEEEECCCCCHHHHHHH
Confidence 666554 48999873 22221 10 012233455666666543 247899999998 8899999
Q ss_pred HHcCCcEEEEcccccCC
Q 023494 244 IEAGANALVAGSAVFGA 260 (281)
Q Consensus 244 ~~aGAD~~VvGSaIf~a 260 (281)
+.+|||.+.+||+++..
T Consensus 270 l~~GAd~V~iG~~~l~~ 286 (349)
T 1p0k_A 270 IALGASCTGMAGHFLKA 286 (349)
T ss_dssp HHTTCSEEEECHHHHHH
T ss_pred HHcCCCEEEEcHHHHHH
Confidence 99999999999998753
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=98.02 E-value=4.5e-05 Score=72.39 Aligned_cols=135 Identities=22% Similarity=0.349 Sum_probs=89.0
Q ss_pred CeeEEEEecC-hhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEE-EECCCCCHHHHHHhhc-cCCEE
Q 023494 117 PLDVHLMIVE-PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGV-VLNPATSLSAIECVLD-VVDLV 191 (281)
Q Consensus 117 ~idaHLmv~d-p~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Gl-ai~p~t~ie~~~~~l~-~vD~I 191 (281)
++.+-+...+ -.+.++.+.++|+|.|.++.-........+.++++|+. ++.+.+ .+ +..+..+.+.+ .+|+|
T Consensus 143 ~~~~~i~~~~~~~~~a~~~~~~G~d~i~i~~~~g~~~~~~e~i~~ir~~~~~~pviv~~v---~~~~~a~~a~~~Gad~I 219 (404)
T 1eep_A 143 RVGAAVSIDIDTIERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNI---VTKEAALDLISVGADCL 219 (404)
T ss_dssp CCEEEECSCTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEE---CSHHHHHHHHTTTCSEE
T ss_pred eEEEEeCCChhHHHHHHHHHHCCCCEEEEeCCCCChHHHHHHHHHHHHHCCCCeEEEcCC---CcHHHHHHHHhcCCCEE
Confidence 3455554421 12346677889999999864322123466788888887 777765 22 24566666555 39999
Q ss_pred EEEeecCCC-------CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 192 LIMSVNPGF-------GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 192 lvmsV~pG~-------~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+ +..+|. ++. -.| .++-+.++++..+. .+++|..+|||+ .+++.+++.+|||.+.+||++..
T Consensus 220 ~v-g~~~G~~~~~~~~~~~-g~p-~~~~l~~v~~~~~~--~~ipVia~GGI~~~~d~~~ala~GAd~V~iG~~~l~ 290 (404)
T 1eep_A 220 KV-GIGPGSICTTRIVAGV-GVP-QITAICDVYEACNN--TNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAG 290 (404)
T ss_dssp EE-CSSCSTTSHHHHHHCC-CCC-HHHHHHHHHHHHTT--SSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHT
T ss_pred EE-CCCCCcCcCccccCCC-Ccc-hHHHHHHHHHHHhh--cCceEEEECCCCCHHHHHHHHHcCCCHHhhCHHHhc
Confidence 88 666653 111 011 24445566655432 358999999998 89999999999999999999854
|
| >3n3m_A Orotidine 5'-phosphate decarboxylase; P. falciparum, 5'-monophosphate decarboxylase, 6- UMP, lyase; HET: PGE NUP; 1.47A {Plasmodium falciparum} SCOP: c.1.2.3 PDB: 2qaf_A* 3bar_A* 2q8z_A* 3mwa_A* 3n2m_A* 3bpw_A* 3n34_A* 3s9y_A* 2f84_A 2q8l_A 2za1_A* 2za2_A 2za3_A* 2zcg_A 3vi2_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=4.5e-06 Score=77.92 Aligned_cols=179 Identities=17% Similarity=0.110 Sum_probs=98.1
Q ss_pred CCeEEEEeeeCcccccc-cCCHHHHHHcCcC------CCCCeeEEEEecChhh----HHHHH-HHcCCCEEEEccccccc
Q 023494 84 CDWIHVDVMDGRFVPNI-TIGPLVVDALRPV------TDLPLDVHLMIVEPEQ----RVPDF-IKAGADIVSVHCEQSST 151 (281)
Q Consensus 84 ~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~------t~~~idaHLmv~dp~~----~i~~~-~~aGAd~Itvh~Ea~~~ 151 (281)
+.++-+ | .+.+ .+|++.++.+++. .++++.+|+|..|... |.+.+ .+.|+|.+|+|.-.. .
T Consensus 117 v~~vKv----G--~~lf~~~G~~gv~~l~~l~~~l~~~g~~VflDlK~~DIpnTv~~ya~~~~~~lgaD~vTVh~~~G-~ 189 (342)
T 3n3m_A 117 ALTFKM----N--FAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMG-T 189 (342)
T ss_dssp CSEEEE----E--GGGTSTTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-S
T ss_pred CcEEEe----c--HHHHHhcCHHHHHHHHHHHHHHHhCCCeEEEEeecCCcHHHHHHHHHHHHHhcCCCEEEEcccCC-H
Confidence 666655 3 2333 7898776333321 4789999999999874 44443 346999999998753 3
Q ss_pred ccHHHHH-HHHHHcCCcEEE-EECCCCCHHHHHHhhc-c--------CCEEEEEe------ecCCCCCCccchh-HHHHH
Q 023494 152 IHLHRTL-NQIKDLGAKAGV-VLNPATSLSAIECVLD-V--------VDLVLIMS------VNPGFGGQSFIES-QVKKI 213 (281)
Q Consensus 152 ~~i~~~l-~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~-~--------vD~Ilvms------V~pG~~GQ~f~~~-~l~kI 213 (281)
+.+..++ +..++.+..+-+ +.-.+..-+.++.... . ++.+.-+. ...|..|--- +. ..+.+
T Consensus 190 ~~l~~a~~~~~~~~~~~v~vvt~tSs~~~~dlq~~~~~~~~~ly~~V~~~a~~~a~~~~~a~~~G~~GvV~-GATsp~e~ 268 (342)
T 3n3m_A 190 NMLKDICYDEEKNKYYSAFVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVV-GANSYDEM 268 (342)
T ss_dssp GGGGGTSEETTTTEECEEEEEEECCSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTTTGGGTCCEEEEE-CTTCHHHH
T ss_pred HHHHHHHHHHHhhcCCcEEEEEeCCCCCHHHHHHHhccCCChHHHHHHHHHHHHHHhcccccccCCceEEE-CCCCHHHH
Confidence 4444432 333444444433 2222222222222100 0 00010000 0122222000 11 12345
Q ss_pred HHHHHHhhhcCCCCeEEEecCCChh--cHHHHH------HcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVI------EAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~------~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.+|+.++ ++.+ +-.||..+ +.+.++ +.|+|.+|+||.|+.++||.++++++++.++
T Consensus 269 ~~iR~~~p----~~~i-LtPGIGAQggDq~rv~tp~~a~~~g~~~ivVGR~I~~A~dP~~Aa~~i~~ei~ 333 (342)
T 3n3m_A 269 NYIRTYFP----NCYI-LSPGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQIN 333 (342)
T ss_dssp HHHHHHST----TCCE-EECCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred HHHHHhCC----CCeE-EeCCCCcCCCCHHHHHhhhhhhhcCceEEEcChhhhcCCCHHHHHHHHHHHHH
Confidence 56666553 3444 67888744 555542 2588999999999999999999999988654
|
| >2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A | Back alignment and structure |
|---|
Probab=97.96 E-value=2.1e-05 Score=72.25 Aligned_cols=93 Identities=14% Similarity=0.146 Sum_probs=65.2
Q ss_pred HHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+.. .++++... |. +++.+.++ .+|+|.+.+ |.++ .++++++.++....+++|
T Consensus 183 ~~~ai~~~r~~~~~~~~i~vev~--tl-ee~~~A~~aGaD~I~ld~---------~~~~---~l~~~v~~l~~~~~~~~I 247 (299)
T 2jbm_A 183 VEKAVRAARQAADFALKVEVECS--SL-QEAVQAAEAGADLVLLDN---------FKPE---ELHPTATVLKAQFPSVAV 247 (299)
T ss_dssp HHHHHHHHHHHHTTTSCEEEEES--SH-HHHHHHHHTTCSEEEEES---------CCHH---HHHHHHHHHHHHCTTSEE
T ss_pred HHHHHHHHHHhCCcCCeEEEecC--CH-HHHHHHHHcCCCEEEECC---------CCHH---HHHHHHHHhhccCCCeeE
Confidence 345667777643 57888664 33 44544443 599998743 2243 444445555443445899
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|+.++.++|||.+.+||.+++++
T Consensus 248 ~ASGGIt~~ni~~~~~aGaD~i~vGs~i~~a~ 279 (299)
T 2jbm_A 248 EASGGITLDNLPQFCGPHIDVISMGMLTQAAP 279 (299)
T ss_dssp EEESSCCTTTHHHHCCTTCCEEECTHHHHSCC
T ss_pred EEECCCCHHHHHHHHHCCCCEEEEChhhcCCC
Confidence 99999999999999999999999999988753
|
| >3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.93 E-value=4.7e-05 Score=71.20 Aligned_cols=198 Identities=15% Similarity=0.173 Sum_probs=126.2
Q ss_pred eEEEeccCcc-CHHHHHHHHHHcCCCeEEEEee-----eCcccc-----------ccc---CCHHH-HHHcCc----CCC
Q 023494 61 SPSILSANFA-KLGEQVKAVELAGCDWIHVDVM-----DGRFVP-----------NIT---IGPLV-VDALRP----VTD 115 (281)
Q Consensus 61 ~pSila~D~~-~l~~~l~~l~~~G~d~iHiDIm-----DG~fvp-----------n~~---~G~~~-I~~ir~----~t~ 115 (281)
.|-++++=+. +-.+.++.+...|...+.+-=. .|+-.| .+. .|.+. ++.+++ ..+
T Consensus 49 NPv~lAaG~~~~~~e~~~~~~~~G~G~v~~ktvt~~pq~gnp~PR~~~~~~~~iN~~G~~n~G~~~~~~~l~~~~~~~~~ 128 (345)
T 3oix_A 49 NCLMNAAGVYCMTREELAAIDHSEAGSFVTXTGTLEERAGNPQPRYADTKLGSINSMGLPNLGINYYLDYVTELQKQPDS 128 (345)
T ss_dssp CSEEECTTSSCSSHHHHHHHHTSSCSBCBCCCBCSSCBCCSCSCCEEECSSEEEECCCCCBSCHHHHHHHHHHHHHSTTC
T ss_pred CCCEEcCCCCCCCHHHHHHHHHcCCCeEEeeeecCCCCCCCCCCcEEecccchhccCCCCChhHHHHHHHHHHHhhccCC
Confidence 4666666554 3447788888887776654200 111111 111 23332 344432 357
Q ss_pred CCeeEEEEecChhhHHHHH---HHcCCC-EEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCCCCHHH
Q 023494 116 LPLDVHLMIVEPEQRVPDF---IKAGAD-IVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPATSLSA 180 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~~~---~~aGAd-~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~ 180 (281)
.|+.+-+.-.+|+.|.+.+ .++|++ +|.+..-+. ..+.+.++++++|+. .+-+.+=+.|++..+.
T Consensus 129 ~pvivsI~g~~~~d~~~~a~~l~~~g~~d~ielNisCPn~~G~~~l~~~~e~l~~il~av~~~~~~PV~vKi~p~~~~~~ 208 (345)
T 3oix_A 129 KNHFLSLVGMSPEETHTILXMVEASKYQGLVELNLSCPNVPGXPQIAYDFETTDQILSEVFTYFTKPLGIKLPPYFDIVH 208 (345)
T ss_dssp CCCEEEECCSSHHHHHHHHHHHHHSSCCSEEEEECSCCCSTTCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCCHHH
T ss_pred CCEEEEecCCCHHHHHHHHHHHhccCCCcEEEEecCCCCcCCchhhcCCHHHHHHHHHHHHHHhCCCeEEEECCCCCHHH
Confidence 8999999889999886644 446876 999886431 123466778888765 5678888999988877
Q ss_pred HHHhhcc-----CCEEEEE-------eecC------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 181 IECVLDV-----VDLVLIM-------SVNP------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 181 ~~~~l~~-----vD~Ilvm-------sV~p------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
+...++. ++.|... .++. |.+|....|..++.|+++++.++ .+++|...|||.
T Consensus 209 ~a~~~~~aga~~i~~int~nt~g~~~~i~~~~~~~~~~~~~gGlSG~ai~p~a~~~v~~i~~~~~---~~ipIIg~GGI~ 285 (345)
T 3oix_A 209 FDQAAAIFNXYPLTFVNCINSIGNGLVIEDETVVIXPKNGFGGIGGDYVKPTALANVHAFYKRLN---PSIQIIGTGGVX 285 (345)
T ss_dssp HHHHHHHHTTSCCSEEEECCCEEEEECEETTEESCSGGGGEEEEEEGGGHHHHHHHHHHHHTTSC---TTSEEEEESSCC
T ss_pred HHHHHHHhCCCceEEEEeecccccceeeccCccccccccccCCcCCccccHHHHHHHHHHHHHcC---CCCcEEEECCCC
Confidence 7666543 4544311 1221 12344445666777777766542 248999999998
Q ss_pred -hhcHHHHHHcCCcEEEEccc-ccCCC
Q 023494 237 -PKNAYKVIEAGANALVAGSA-VFGAK 261 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSa-If~a~ 261 (281)
.+.+.+++.+|||.+-+||+ ++..+
T Consensus 286 s~~da~~~l~aGAd~V~igra~~~~gP 312 (345)
T 3oix_A 286 TGRDAFEHILCGASMVQIGTALHQEGP 312 (345)
T ss_dssp SHHHHHHHHHHTCSEEEESHHHHHHCT
T ss_pred ChHHHHHHHHhCCCEEEEChHHHhcCh
Confidence 88999999999999999999 67544
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=97.93 E-value=0.00022 Score=65.12 Aligned_cols=174 Identities=14% Similarity=0.122 Sum_probs=112.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeee-CcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMD-GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImD-G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.....+.++.|.+.|+++|++---. -..+|.+.-..++++.+++..+.++-+|+ .| .+.++.+.++|++.|.+-.
T Consensus 28 ~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~--~~-~~~i~~a~~aG~~~v~i~~ 104 (302)
T 2ftp_A 28 EVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALA--PN-LKGFEAALESGVKEVAVFA 104 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC--CS-HHHHHHHHHTTCCEEEEEE
T ss_pred CHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEe--CC-HHHHHHHHhCCcCEEEEEE
Confidence 33445566778889999998883210 00134443223566777766667777766 34 3478889999999988743
Q ss_pred ccccc---------------ccHHHHHHHHHHcCCcEEEEECC--------CCCHHHHHHhhc-----cCCEEEEEeecC
Q 023494 147 EQSST---------------IHLHRTLNQIKDLGAKAGVVLNP--------ATSLSAIECVLD-----VVDLVLIMSVNP 198 (281)
Q Consensus 147 Ea~~~---------------~~i~~~l~~ik~~G~k~Glai~p--------~t~ie~~~~~l~-----~vD~IlvmsV~p 198 (281)
-. +. +...+.++.+|++|+++-..+.. .++.+.+.++++ .+|.|.+-..+
T Consensus 105 ~~-s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~DT~- 182 (302)
T 2ftp_A 105 AA-SEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTI- 182 (302)
T ss_dssp ES-CHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHTTCSEEEEEESS-
T ss_pred ec-CHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEEeCCC-
Confidence 32 11 23477889999999988654322 266777777664 27888775333
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
|. .......+.++++++.++ +.+|.+ |-|....|....+++|++.|=+
T Consensus 183 G~---~~P~~~~~lv~~l~~~~~----~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~ 234 (302)
T 2ftp_A 183 GV---GTAGATRRLIEAVASEVP----RERLAGHFHDTYGQALANIYASLLEGIAVFDS 234 (302)
T ss_dssp SC---CCHHHHHHHHHHHTTTSC----GGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred CC---cCHHHHHHHHHHHHHhCC----CCeEEEEeCCCccHHHHHHHHHHHhCCCEEEe
Confidence 33 222344566666665442 245655 7899999999999999997743
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00018 Score=65.32 Aligned_cols=172 Identities=15% Similarity=0.118 Sum_probs=112.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeee-CcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMD-GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImD-G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
...+.++.|.+.|+++|++---. +.|+|.+.--.+.++.+++.++.++-+|+ .|. +-++.+.++|++.|.+-.-..
T Consensus 27 ~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~--~n~-~~i~~a~~~G~~~V~i~~~~S 103 (295)
T 1ydn_A 27 DKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLV--PNM-KGYEAAAAAHADEIAVFISAS 103 (295)
T ss_dssp HHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEEC--SSH-HHHHHHHHTTCSEEEEEEESC
T ss_pred HHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEe--CCH-HHHHHHHHCCCCEEEEEEecC
Confidence 44455677888999998884221 34556554445777888776667777765 443 467889999999988864221
Q ss_pred --------------ccccHHHHHHHHHHcCCcEEEEECC--------CCCHHHHHHhhc-----cCCEEEEEeecCCCCC
Q 023494 150 --------------STIHLHRTLNQIKDLGAKAGVVLNP--------ATSLSAIECVLD-----VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 150 --------------~~~~i~~~l~~ik~~G~k~Glai~p--------~t~ie~~~~~l~-----~vD~IlvmsV~pG~~G 202 (281)
..+...+.++.+|+.|+++...+.. .++.+.+.++.+ .+|.|.+-.. .|
T Consensus 104 ~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt----~G 179 (295)
T 1ydn_A 104 EGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT----IG 179 (295)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET----TS
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC----CC
Confidence 1133456688999999998743331 356777766665 2788877532 23
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
........+.++++++..+ +.++.+ |-|....|....+++|++.+=+
T Consensus 180 ~~~P~~~~~lv~~l~~~~~----~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~ 230 (295)
T 1ydn_A 180 RGTPDTVAAMLDAVLAIAP----AHSLAGHYHDTGGRALDNIRVSLEKGLRVFDA 230 (295)
T ss_dssp CCCHHHHHHHHHHHHTTSC----GGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEE
T ss_pred CcCHHHHHHHHHHHHHhCC----CCeEEEEECCCcchHHHHHHHHHHhCCCEEEe
Confidence 2222344566676665542 145555 6788888999999999998765
|
| >3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00025 Score=66.83 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=124.4
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEee-----eCccccc-------------cc---CCHHH-HHHcCcC-----
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVM-----DGRFVPN-------------IT---IGPLV-VDALRPV----- 113 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDIm-----DG~fvpn-------------~~---~G~~~-I~~ir~~----- 113 (281)
.|-++|+=+..-.++++.+.+.|...+.+-=. .|+--|. +. .|.+. ++.+++.
T Consensus 61 NPvglAaG~~~~~~~~~~~~~~g~G~v~~ktvt~~pq~GNp~PR~~~~~~~~~~iN~~G~~N~G~~~~~~~l~~~~~~~~ 140 (367)
T 3zwt_A 61 NPVGIAAGFDKHGEAVDGLYKMGFGFVEIGSVTPKPQEGNPRPRVFRLPEDQAVINRYGFNSHGLSVVEHRLRARQQKQA 140 (367)
T ss_dssp SSEEECTTSSTTSSSHHHHHHTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCCCBCCHHHHHHHHHTTHHHHH
T ss_pred CCCEeCCCcCCCHHHHHHHHhcCcCeEEeCCccCCCCCCCCCCeEEEecCccceeeccCCCCccHHHHHHHHHHHhhhcc
Confidence 35566655555567788888888888877411 2221121 11 23333 4445431
Q ss_pred ----CCCCeeEEEEec-----ChhhHHHHHHHc--CCCEEEEcccccc---------cccHHHHHHHHHH--------cC
Q 023494 114 ----TDLPLDVHLMIV-----EPEQRVPDFIKA--GADIVSVHCEQSS---------TIHLHRTLNQIKD--------LG 165 (281)
Q Consensus 114 ----t~~~idaHLmv~-----dp~~~i~~~~~a--GAd~Itvh~Ea~~---------~~~i~~~l~~ik~--------~G 165 (281)
.+.|+-+-+--+ ++.+|.+.+..+ ++|++.+-.-+.. .+.+.++++.+++ ..
T Consensus 141 ~~~~~~~pv~vniggn~~t~~~~~dy~~~~~~~~~~ad~ielNisCPn~~G~~~l~~~~~l~~ll~av~~~~~~~~~~~~ 220 (367)
T 3zwt_A 141 KLTEDGLPLGVNLGKNKTSVDAAEDYAEGVRVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHR 220 (367)
T ss_dssp HHHHTTCCEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHTSCGGGC
T ss_pred ccccCCceEEEEEecCCCCCcCHHHHHHHHHHHhhhCCEEEEECCCCCCCCccccCCHHHHHHHHHHHHHHHhhccccCC
Confidence 256788877543 567787655443 4899998654310 1235566776664 35
Q ss_pred CcEEEEECCCCCHHHHHHhhc-----cCCEEEEEeecC---------------CCCCCccchhHHHHHHHHHHHhhhcCC
Q 023494 166 AKAGVVLNPATSLSAIECVLD-----VVDLVLIMSVNP---------------GFGGQSFIESQVKKISDLRRMCLEKGV 225 (281)
Q Consensus 166 ~k~Glai~p~t~ie~~~~~l~-----~vD~IlvmsV~p---------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~ 225 (281)
+-+.+=+.|+.+.+.+.++.+ .+|.|.+...-. |.+|....|..++.|+++++.+..
T Consensus 221 ~Pv~vKi~p~~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~~~gGlSG~~i~p~a~~~v~~i~~~v~~--- 297 (367)
T 3zwt_A 221 PAVLVKIAPDLTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQG--- 297 (367)
T ss_dssp CEEEEEECSCCCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTTT---
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcccccccccccccccCCcCCcccchhHHHHHHHHHHHcCC---
Confidence 677788899877655544433 389887642211 122344456667888888877642
Q ss_pred CCeEEEecCCC-hhcHHHHHHcCCcEEEEcccc-cC
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAV-FG 259 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaI-f~ 259 (281)
+++|...|||. .+.+.+++++|||.+-+||++ +.
T Consensus 298 ~ipvI~~GGI~s~~da~~~l~~GAd~V~vgra~l~~ 333 (367)
T 3zwt_A 298 RVPIIGVGGVSSGQDALEKIRAGASLVQLYTALTFW 333 (367)
T ss_dssp CSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHH
T ss_pred CceEEEECCCCCHHHHHHHHHcCCCEEEECHHHHhc
Confidence 47899999998 889999999999999999997 54
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00018 Score=66.75 Aligned_cols=128 Identities=16% Similarity=0.196 Sum_probs=85.7
Q ss_pred HHHHcCCCEEEEccccc--------cc----------------ccHHHHHHHHHHc-CCcEEEEECCC------CCHHHH
Q 023494 133 DFIKAGADIVSVHCEQS--------ST----------------IHLHRTLNQIKDL-GAKAGVVLNPA------TSLSAI 181 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~~----------------~~i~~~l~~ik~~-G~k~Glai~p~------t~ie~~ 181 (281)
.+.++|.|.|-+|.-.. +. .-+.++++++|+. +..+++=+++. .+.+..
T Consensus 152 ~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g~~~~~~ 231 (338)
T 1z41_A 152 RAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADH 231 (338)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHH
T ss_pred HHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCCCCHHHH
Confidence 34678999999996420 00 1146778888775 78899988874 344444
Q ss_pred HHhhc-----cCCEEEEEeecCCCCCC--ccch-hHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcC-CcEE
Q 023494 182 ECVLD-----VVDLVLIMSVNPGFGGQ--SFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 182 ~~~l~-----~vD~IlvmsV~pG~~GQ--~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aG-AD~~ 251 (281)
.+++. .+|+|-+... +...+ +..+ ..++-++++++.. +++|.+.||| +++.+.++++.| ||.+
T Consensus 232 ~~~a~~l~~~Gvd~i~v~~~--~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~Ggi~s~~~a~~~l~~G~aD~V 304 (338)
T 1z41_A 232 IGFAKWMKEQGVDLIDCSSG--ALVHADINVFPGYQVSFAEKIREQA-----DMATGAVGMITDGSMAEEILQNGRADLI 304 (338)
T ss_dssp HHHHHHHHHTTCCEEEEECC--CSSCCCCCCCTTTTHHHHHHHHHHH-----CCEEEECSSCCSHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHcCCCEEEEecC--ccccCCCCCCccchHHHHHHHHHHC-----CCCEEEECCCCCHHHHHHHHHcCCceEE
Confidence 33332 2899877532 11112 1112 2355566666654 3789999999 699999999999 9999
Q ss_pred EEcccccCCCCHHHHH
Q 023494 252 VAGSAVFGAKDYAEAI 267 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~ 267 (281)
.+||+++..+|.-..+
T Consensus 305 ~iGR~~i~nPdl~~ki 320 (338)
T 1z41_A 305 FIGRELLRDPFFARTA 320 (338)
T ss_dssp EECHHHHHCTTHHHHH
T ss_pred eecHHHHhCchHHHHH
Confidence 9999999877765443
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00012 Score=63.05 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=67.0
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
.++|++.=. -...++.+|+.|+.+.. .+-.+..++...+.++ .+|+|-+| ||. .|..+
T Consensus 81 ~~pdGIIsT--------k~~~i~~Ak~~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEiL---PGi-----~p~iI-- 142 (192)
T 3kts_A 81 ICPDGIIST--------RGNAIMKAKQHKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIELL---PGI-----IPEQV-- 142 (192)
T ss_dssp TCCSEEEES--------CHHHHHHHHHTTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEEE---CTT-----CHHHH--
T ss_pred CCCCEEEeC--------cHHHHHHHHHCCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEEC---Cch-----hHHHH--
Confidence 478877522 23578888999987753 2222233344444444 47999888 773 45554
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccc-ccC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSA-VFG 259 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa-If~ 259 (281)
+++++.. +.+|-+.|+|+ .|.+..++++||+.++.|.. +++
T Consensus 143 -~~i~~~~-----~~PiIaGGlI~~~edv~~al~aGA~aVsTs~~~LW~ 185 (192)
T 3kts_A 143 -QKMTQKL-----HIPVIAGGLIETSEQVNQVIASGAIAVTTSNKHLWE 185 (192)
T ss_dssp -HHHHHHH-----CCCEEEESSCCSHHHHHHHHTTTEEEEEECCGGGGT
T ss_pred -HHHHHhc-----CCCEEEECCcCCHHHHHHHHHcCCeEEEeCCHHHhC
Confidence 4444443 36898999999 88999999999999999944 665
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00014 Score=70.53 Aligned_cols=182 Identities=19% Similarity=0.240 Sum_probs=88.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-----C--CCCeeEEEEe-cChhhHHHHHHHcCCCEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-----T--DLPLDVHLMI-VEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-----t--~~~idaHLmv-~dp~~~i~~~~~aGAd~I 142 (281)
.+.+.++.+.+.++..+.|==-+|.++=.++. .++++.+... . ...+-+-+-. .+-.+.++.+.++|+|.+
T Consensus 175 ~l~ea~~~m~~~~~~~lpVVd~~g~lvGiIt~-~Dll~~~~~~~~~~D~~~~l~vga~ig~~~~~~~~a~~l~~aGvd~v 253 (494)
T 1vrd_A 175 SLEKAKEILHQHRIEKLPLVSKDNKLVGLITI-KDIMSVIEHPNAARDEKGRLLVGAAVGTSPETMERVEKLVKAGVDVI 253 (494)
T ss_dssp -----------------------------------CHHHHTCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEE
T ss_pred CHHHHHHHHHHcCCcEEEEEcCCCeEEEEEEH-HHHHhhhccccccccchhhhccccccCcCHhHHHHHHHHHHhCCCEE
Confidence 56677777777777665441112443322222 1233333221 0 1111111111 121345777899999999
Q ss_pred EEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCC-----ccchhHHHHHH
Q 023494 143 SVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQ-----SFIESQVKKIS 214 (281)
Q Consensus 143 tvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ-----~f~~~~l~kI~ 214 (281)
.+|..........+.++++++. ++.+.+- ..+..+..+.+.+ .+|.|.+ +.++|.... .+-...+.-+.
T Consensus 254 ~i~~~~G~~~~~~e~i~~i~~~~p~~pvi~g--~~~t~e~a~~l~~~G~d~I~v-~~~~G~~~~~~~~~~~g~p~~~~l~ 330 (494)
T 1vrd_A 254 VIDTAHGHSRRVIETLEMIKADYPDLPVVAG--NVATPEGTEALIKAGADAVKV-GVGPGSICTTRVVAGVGVPQLTAVM 330 (494)
T ss_dssp EECCSCCSSHHHHHHHHHHHHHCTTSCEEEE--EECSHHHHHHHHHTTCSEEEE-CSSCSTTCHHHHHHCCCCCHHHHHH
T ss_pred EEEecCCchHHHHHHHHHHHHHCCCceEEeC--CcCCHHHHHHHHHcCCCEEEE-cCCCCccccccccCCCCccHHHHHH
Confidence 9976532223466788888887 6666542 1234566666554 4999987 666652110 01111234455
Q ss_pred HHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
++++.... .+++|.++|||. .+.+.+++++|||.+.+|+++.
T Consensus 331 ~v~~~~~~--~~ipvia~GGI~~~~di~kala~GAd~V~iGr~~l 373 (494)
T 1vrd_A 331 ECSEVARK--YDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFA 373 (494)
T ss_dssp HHHHHHHT--TTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred HHHHHHhh--cCCCEEEECCcCCHHHHHHHHHcCCCEEEECHHHh
Confidence 55555432 357899999995 8999999999999999999985
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00016 Score=66.41 Aligned_cols=150 Identities=17% Similarity=0.191 Sum_probs=97.6
Q ss_pred HHHHHHcCcCCCCCeeEEEEecChhhHHHH---HHHcCCCEEEEcccccc---------------cccHHHHHHHHHHc-
Q 023494 104 PLVVDALRPVTDLPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQSS---------------TIHLHRTLNQIKDL- 164 (281)
Q Consensus 104 ~~~I~~ir~~t~~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~~---------------~~~i~~~l~~ik~~- 164 (281)
....+.+....+.|+.+.|.-.+|..|.+. +.++ +|.|-+|.-+.. ..-+.++++++++.
T Consensus 47 ~~~~~~l~~~~~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~ 125 (318)
T 1vhn_A 47 QKTEELLPQPHERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSV 125 (318)
T ss_dssp HHHHHHSCCTTCTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHC
T ss_pred HhHHHhhhCcCCCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhh
Confidence 345566633367899999998899877553 4567 999999965420 11245677888774
Q ss_pred CCcEEEEECCCCCH----HHHHHhhc-cCCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecCC-Ch
Q 023494 165 GAKAGVVLNPATSL----SAIECVLD-VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGV-GP 237 (281)
Q Consensus 165 G~k~Glai~p~t~i----e~~~~~l~-~vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~ 237 (281)
+..+++-+.++... +..+.+.+ .+|+|.+. .+...|.+. +..++-++++++ +++|.++||| +.
T Consensus 126 ~~pv~vKir~G~~~~~~~~~a~~l~~~G~d~i~v~---g~~~~~~~~~~~~~~~i~~i~~-------~ipVi~~GgI~s~ 195 (318)
T 1vhn_A 126 SGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFIH---TRTVVQSFTGRAEWKALSVLEK-------RIPTFVSGDIFTP 195 (318)
T ss_dssp SSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEEE---SSCTTTTTSSCCCGGGGGGSCC-------SSCEEEESSCCSH
T ss_pred CCCEEEEecCCCChHHHHHHHHHHHHhCCCEEEEc---CCCccccCCCCcCHHHHHHHHc-------CCeEEEECCcCCH
Confidence 78888877664322 33444433 38999774 332222111 111233333332 4789999999 58
Q ss_pred hcHHHHHH-cCCcEEEEcccccCCCCHH
Q 023494 238 KNAYKVIE-AGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 238 e~i~~~~~-aGAD~~VvGSaIf~a~dp~ 264 (281)
+.+.++++ .|||.+.+|++++..++.-
T Consensus 196 ~da~~~l~~~gad~V~iGR~~l~~P~l~ 223 (318)
T 1vhn_A 196 EDAKRALEESGCDGLLVARGAIGRPWIF 223 (318)
T ss_dssp HHHHHHHHHHCCSEEEESGGGTTCTTHH
T ss_pred HHHHHHHHcCCCCEEEECHHHHhCcchH
Confidence 99999988 7999999999988766543
|
| >1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00023 Score=63.51 Aligned_cols=176 Identities=16% Similarity=0.134 Sum_probs=115.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
-.+.++.+...|+|++-+|..|+ |.- .--...+..++. .+.++.|-+--.||. +++.+.++|+++|.++--. +
T Consensus 29 ~p~~~e~a~~~gaD~v~lDlEd~---p~~~~~a~~~~~~~~~-~~~~~~VRv~~~~~~-~i~~~l~~g~~gI~~P~V~-s 102 (256)
T 1dxe_A 29 NPISTEVLGLAGFDWLVLDGEHA---PNDISTFIPQLMALKG-SASAPVVRVPTNEPV-IIKRLLDIGFYNFLIPFVE-T 102 (256)
T ss_dssp SHHHHHHHTTSCCSEEEEESSSS---SCCHHHHHHHHHHTTT-CSSEEEEECSSSCHH-HHHHHHHTTCCEEEESCCC-S
T ss_pred CHHHHHHHHhCCCCEEEEcCCCC---CCCHHHHHHHHHHHHh-CCCcEEEECCCCCHH-HHHHHHhcCCceeeecCcC-C
Confidence 34667788889999999999998 421 111222333322 344555533334544 5788889999999998654 3
Q ss_pred cccHHHHHHHHHH----------------------------cCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----
Q 023494 151 TIHLHRTLNQIKD----------------------------LGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSV---- 196 (281)
Q Consensus 151 ~~~i~~~l~~ik~----------------------------~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV---- 196 (281)
.+++.++.+.++. ...++++.|....-++.+.+++. .+|.+.+.+.
T Consensus 103 ~~ev~~~~~~~~~~p~g~Rg~~~~~~~~~~g~~~~~~~~~~~~~~v~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL~~ 182 (256)
T 1dxe_A 103 KEEAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAA 182 (256)
T ss_dssp HHHHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCccCCCcchhhhhcCchHHHHHhcCcccEEEEEECCHHHHHhHHHHhCCCCCCEEEEChHHHHH
Confidence 5566666666541 13557777754444567777765 6899988543
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
+-|..++...|..+.-++++..-....|. +..+-.+ +++..+.+++.|.+.+.+|+.
T Consensus 183 ~lg~~~~~~~p~v~~a~~~iv~aa~a~G~--~~~v~~~-d~~~~~~~~~~G~~~~s~~~d 239 (256)
T 1dxe_A 183 ALGHLGNASHPDVQKAIQHIFNRASAHGK--PSGILAP-VEADARRYLEWGATFVAVGSD 239 (256)
T ss_dssp HTTCTTCTTSHHHHHHHHHHHHHHHHTTC--CEEEECC-SHHHHHHHHHTTCCEEEEEEH
T ss_pred HhCCCCCCCCHHHHHHHHHHHHHHHHhCC--ceEEecC-CHHHHHHHHHcCCCEEEechH
Confidence 45666677778777777777766666553 4444443 788889999999999999965
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=97.80 E-value=0.00039 Score=64.77 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=83.4
Q ss_pred HHHcCCCEEEEccccc--------cc------------c----cHHHHHHHHHHc-C--CcEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCEQS--------ST------------I----HLHRTLNQIKDL-G--AKAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~~------------~----~i~~~l~~ik~~-G--~k~Glai~p~------t~ie~ 180 (281)
+.++|.|.|-+|.-.. +. + -+.++++++|+. | ..+|+=++|. .+.+.
T Consensus 161 a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~~~~~ 240 (349)
T 3hgj_A 161 ALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGWSLED 240 (349)
T ss_dssp HHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSCCHHH
T ss_pred HHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCCCHHH
Confidence 4678999999997541 00 0 145788888875 3 4589988874 34444
Q ss_pred HHHhh----c-cCCEEEEEeecCCCCCCc---c-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-Cc
Q 023494 181 IECVL----D-VVDLVLIMSVNPGFGGQS---F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-AN 249 (281)
Q Consensus 181 ~~~~l----~-~vD~IlvmsV~pG~~GQ~---f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD 249 (281)
..+++ + .+|+|-+.. .+...+. . ....++-++++++.. +++|.+.|||+ ++++.++++.| +|
T Consensus 241 ~~~la~~L~~~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~Ggi~t~e~a~~~l~~G~aD 313 (349)
T 3hgj_A 241 TLAFARRLKELGVDLLDCSS--GGVVLRVRIPLAPGFQVPFADAVRKRV-----GLRTGAVGLITTPEQAETLLQAGSAD 313 (349)
T ss_dssp HHHHHHHHHHTTCCEEEEEC--CCSCSSSCCCCCTTTTHHHHHHHHHHH-----CCEEEECSSCCCHHHHHHHHHTTSCS
T ss_pred HHHHHHHHHHcCCCEEEEec--CCcCcccccCCCccccHHHHHHHHHHc-----CceEEEECCCCCHHHHHHHHHCCCce
Confidence 33332 2 389987752 1221111 1 112345566666654 37899999995 99999999999 99
Q ss_pred EEEEcccccCCCCHHHHH
Q 023494 250 ALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 250 ~~VvGSaIf~a~dp~~~~ 267 (281)
.+.+||+++..+|....+
T Consensus 314 ~V~iGR~~lanPdl~~k~ 331 (349)
T 3hgj_A 314 LVLLGRVLLRDPYFPLRA 331 (349)
T ss_dssp EEEESTHHHHCTTHHHHH
T ss_pred EEEecHHHHhCchHHHHH
Confidence 999999999877754433
|
| >1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.79 E-value=9.3e-05 Score=67.53 Aligned_cols=90 Identities=22% Similarity=0.274 Sum_probs=64.6
Q ss_pred HHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+...++.+|+.. +++|+... | .+++++.+. .+|||++-. |.|.. ++++.+.++. ++++
T Consensus 182 i~~av~~ar~~~~~~~~IgVev~--t-~eea~eA~~aGaD~I~ld~---------~~~~~---~k~av~~v~~---~ipi 243 (286)
T 1x1o_A 182 VGEAVRRAKARAPHYLKVEVEVR--S-LEELEEALEAGADLILLDN---------FPLEA---LREAVRRVGG---RVPL 243 (286)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEES--S-HHHHHHHHHHTCSEEEEES---------CCHHH---HHHHHHHHTT---SSCE
T ss_pred HHHHHHHHHHhCCCCCEEEEEeC--C-HHHHHHHHHcCCCEEEECC---------CCHHH---HHHHHHHhCC---CCeE
Confidence 455677777764 67898774 3 666665544 599998732 33333 3444444432 4789
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++.||||++|++++.++|+|++.+|+.+++++
T Consensus 244 ~AsGGIt~eni~~~a~tGvD~IsVgs~~~~a~ 275 (286)
T 1x1o_A 244 EASGNMTLERAKAAAEAGVDYVSVGALTHSAK 275 (286)
T ss_dssp EEESSCCHHHHHHHHHHTCSEEECTHHHHSCC
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEEcHHHcCCC
Confidence 99999999999999999999999999887653
|
| >4aaj_A N-(5'-phosphoribosyl)anthranilate isomerase; alpha/beta-barrel, hyperthermophilic, phosphoribo isomerase; 1.75A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.0018 Score=57.07 Aligned_cols=171 Identities=19% Similarity=0.152 Sum_probs=97.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCE 147 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~E 147 (281)
.+.++ ++.+ +.|+|++=+ .|.|. -...++..++|.+....+..+--...|+.+..+.+.+.+.|+|-+|.+
T Consensus 29 t~~ed-~~a~-~~gaD~iGf-----If~~~SpR~V~~~~A~~i~~~~~~~~~~v~v~v~~~ei~~~i~~~~ld~vQLHG~ 101 (228)
T 4aaj_A 29 KSLEE-LEIV-EKHADATGV-----VVNSNSKRRIPLEKAREIIENSAIPVFLVSTMVGFSEWAMAIERTGAQYIQVHSN 101 (228)
T ss_dssp CSHHH-HHHH-HTTCSEEEE-----ECSSSSTTBCCHHHHHHHHHHCSSCEEEEECCCCHHHHHHHHHHHTCSEEEECSC
T ss_pred CcHHH-HHHH-HcCCCEEEE-----EecCCCCCCCCHHHHHHHHHhhCCCCEEEeccCchHHHHHHHHhccchheecccc
Confidence 45555 5544 679999744 34442 134677777775533333322222346776666777889999999986
Q ss_pred ccccccHHHHHHHHHH-cCCcEEEEECCCC----CHHHHHHh----h-ccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 148 QSSTIHLHRTLNQIKD-LGAKAGVVLNPAT----SLSAIECV----L-DVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 148 a~~~~~i~~~l~~ik~-~G~k~Glai~p~t----~ie~~~~~----l-~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
. ++ +.++.+++ .|+++.=++...+ +.+....+ . ..+|++++=+ +|-+|+.|.-+.++.+.
T Consensus 102 E----~~-~~~~~l~~~~~~~viKa~~v~~~~~~~~~~~~~~~~~~~~~~~d~~LlDs--~GGtG~~fDW~~~~~~~--- 171 (228)
T 4aaj_A 102 A----LP-QTIDTLKKEFGVFVMKAFRVPTISKNPEEDANRLLSEISRYNADMVLLDT--GAGSGKLHDLRVSSLVA--- 171 (228)
T ss_dssp C----CH-HHHHHHHHHHCCEEEEEEECCSSCSCHHHHHHHHHHHHHHSCCSEEEEEC---------CCCHHHHHHH---
T ss_pred c----CH-HHHHHHhhccCceEEEEEEecccccchhhhHHHHHHHHhccCCCEEccCC--CCCCcCcCChHHHHHhh---
Confidence 3 23 34555554 5887766665432 12222221 1 2489998743 46678888755443332
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccC--CCCHH
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFG--AKDYA 264 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~--a~dp~ 264 (281)
. + .++-+.||+|++|+.++++ .++..+=+-|.+=. -.|++
T Consensus 172 ~---~----~p~iLAGGL~peNV~~Ai~~~~P~gVDVsSGVEs~G~KD~~ 214 (228)
T 4aaj_A 172 R---K----IPVIVAGGLNAENVEEVIKVVKPYGVDVSSGVEKYGIKDPK 214 (228)
T ss_dssp H---H----SCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEETTEECHH
T ss_pred h---c----CCeEEECCCCHHHHHHHHHHhCCCEEEeCCCCCCCCCcCHH
Confidence 1 1 3677999999999998776 67777767776642 24664
|
| >2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00048 Score=62.71 Aligned_cols=168 Identities=13% Similarity=0.083 Sum_probs=107.5
Q ss_pred HHHHHHHHcCCCeEEEEeee-CcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc-
Q 023494 74 EQVKAVELAGCDWIHVDVMD-GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST- 151 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImD-G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~- 151 (281)
+.++.|.+.|+++|++---. ..++|.+.--.+.++.+++.++..+-+. +.+ .+-++.+.++|++.|++-.-. +.
T Consensus 31 ~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l--~~~-~~~i~~a~~ag~~~v~i~~~~-sd~ 106 (298)
T 2cw6_A 31 KLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVL--TPN-LKGFEAAVAAGAKEVVIFGAA-SEL 106 (298)
T ss_dssp HHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEE--CCS-HHHHHHHHHTTCSEEEEEEES-CHH
T ss_pred HHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEE--cCC-HHhHHHHHHCCCCEEEEEecC-CHH
Confidence 45667788999988773111 0114555433456777777656666653 334 345888999999999886543 11
Q ss_pred --------------ccHHHHHHHHHHcCCcEEEEECC--------CCCHHHHHHhhc-----cCCEEEEEeecCCCCCCc
Q 023494 152 --------------IHLHRTLNQIKDLGAKAGVVLNP--------ATSLSAIECVLD-----VVDLVLIMSVNPGFGGQS 204 (281)
Q Consensus 152 --------------~~i~~~l~~ik~~G~k~Glai~p--------~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~ 204 (281)
+.+.+.++.+|+.|+++.+.+.. .++.+.+.++.+ .+|.|.+--. .|-.
T Consensus 107 ~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT----~G~~ 182 (298)
T 2cw6_A 107 FTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDT----IGVG 182 (298)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHHHHHHHHHTTCSEEEEEET----TSCC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHHHHHHHHHcCCCEEEecCC----CCCc
Confidence 13456789999999998765532 246666666543 2787766422 2333
Q ss_pred cchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEE
Q 023494 205 FIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 205 f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
...+..+.++.+++.++ +.+|.+ |-|....|.-..+++|++.+=.
T Consensus 183 ~P~~~~~lv~~l~~~~~----~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~ 231 (298)
T 2cw6_A 183 TPGIMKDMLSAVMQEVP----LAALAVHCHDTYGQALANTLMALQMGVSVVDS 231 (298)
T ss_dssp CHHHHHHHHHHHHHHSC----GGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred CHHHHHHHHHHHHHhCC----CCeEEEEECCCCchHHHHHHHHHHhCCCEEEe
Confidence 33444566777777653 245665 7888888888899999997743
|
| >1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00014 Score=70.99 Aligned_cols=129 Identities=19% Similarity=0.257 Sum_probs=82.4
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc--C-CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--G-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG 201 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G-~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~ 201 (281)
+....++.+.++|++.+.++..........+.++.+++. + ..+++-- -...+..+.+.+ .+|.|.+ +..||..
T Consensus 242 ~~~e~~~~l~e~gv~~l~Vd~~~g~~~~~~~~i~~lk~~~~~~~~Vi~G~--V~t~~~a~~l~~aGad~I~V-g~~~g~~ 318 (503)
T 1me8_A 242 DFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGN--IVDGEGFRYLADAGADFIKI-GIGGGSI 318 (503)
T ss_dssp SHHHHHHHHHHHTCSEEEECCSCCCSHHHHHHHHHHHHHHGGGSCEEEEE--ECSHHHHHHHHHHTCSEEEE-CSSCSTT
T ss_pred hHHHHHHHHHhhhccceEEecccCcccchhhHHHHHHHhCCCCceEeecc--ccCHHHHHHHHHhCCCeEEe-cccCCcC
Confidence 434457778889999999976532122345667778876 4 5555321 124555555555 4899988 8888642
Q ss_pred --CCc---c-chhHHHHHHHHHHH----hhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 202 --GQS---F-IESQVKKISDLRRM----CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 202 --GQ~---f-~~~~l~kI~~lr~l----~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
... + .| ++.-|.++.+. .++.+.++++..||||. ...+.+++++|||.+.+|+.+.
T Consensus 319 ~~~r~~~~~g~p-~~~~l~~v~~~~~~~~~~~~~~ipvia~GGi~~~~di~kAlalGA~~V~iG~~~~ 385 (503)
T 1me8_A 319 CITREQKGIGRG-QATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFA 385 (503)
T ss_dssp CCSTTTTCCCCC-HHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred cccccccCCCCc-hHHHHHHHHHHHHHHhhhcCCCceEEEeCCCCCHHHHHHHHHcCCCEEEECchhh
Confidence 111 1 12 23333333332 22333357899999999 7789999999999999999985
|
| >3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00021 Score=68.39 Aligned_cols=196 Identities=18% Similarity=0.190 Sum_probs=122.5
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEee-----eC-------------cccccccC---CHH-HHHHcCcC-----
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVM-----DG-------------RFVPNITI---GPL-VVDALRPV----- 113 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDIm-----DG-------------~fvpn~~~---G~~-~I~~ir~~----- 113 (281)
.|-.+|+=+..-.+++..+.+.|...+++-=. .| .+++.+.| |.+ +++.+++.
T Consensus 95 NPvglAAG~dk~~~~~~~l~~lGfG~vevgtvT~~pq~GNp~PRlfrl~e~~aiiN~~GfnN~G~d~~~~~l~~~~~~~~ 174 (415)
T 3i65_A 95 NPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQE 174 (415)
T ss_dssp SSEEECTTSSTTCSSHHHHHTTTCSEEEEEEECSSCBCCSCSCCEEEEGGGTEEEECCCSCBCCHHHHHHHHHHHHHHHT
T ss_pred CCCEECCCCCCCHHHHHHHHHcCCCeEEeCcccCCcCCCCCCCeEEeccCCCceeecCCCCchhHHHHHHHHHHHHhhcc
Confidence 47777776666667788898999988877411 11 12222222 433 23444321
Q ss_pred -----CCCCeeEEEEecC-----hhhHHHHHH--HcCCCEEEEccccc---------ccccHHHHHHHHHHc--------
Q 023494 114 -----TDLPLDVHLMIVE-----PEQRVPDFI--KAGADIVSVHCEQS---------STIHLHRTLNQIKDL-------- 164 (281)
Q Consensus 114 -----t~~~idaHLmv~d-----p~~~i~~~~--~aGAd~Itvh~Ea~---------~~~~i~~~l~~ik~~-------- 164 (281)
...++-+-+--+. +++|++.+. ..-+|++.+-.-+. ..+.+.++++++++.
T Consensus 175 ~~~~~~~~~vgvnIg~nk~t~~~~~Dy~~~a~~l~~~ad~ieiNiScPNt~Gl~~lq~~~~l~~ll~aV~~~~~~~~~~~ 254 (415)
T 3i65_A 175 EDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNN 254 (415)
T ss_dssp TCGGGTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCCC--------CCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccCceEEEEeccccCccccHHHHHHHHHHHHhhCCEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHHHhhcccc
Confidence 1345556664443 466755332 22389999875431 122356677777653
Q ss_pred -------------CCc-EEEEECCCCCHHHHHHhhc-----cCCEEEEEeec------------C-CCCCCccchhHHHH
Q 023494 165 -------------GAK-AGVVLNPATSLSAIECVLD-----VVDLVLIMSVN------------P-GFGGQSFIESQVKK 212 (281)
Q Consensus 165 -------------G~k-~Glai~p~t~ie~~~~~l~-----~vD~IlvmsV~------------p-G~~GQ~f~~~~l~k 212 (281)
.+- +.+=|.|+.+.+.+.++.+ .+|.|.+...- . |.+|....|..++-
T Consensus 255 ~~~~~~~~~~~~~~~P~V~VKi~pd~~~~~i~~iA~~a~~aGaDgIiv~Ntt~~r~dl~~~~~~~GGlSG~a~~p~al~~ 334 (415)
T 3i65_A 255 IMNDEFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKF 334 (415)
T ss_dssp CSCHHHHCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHHTCSEEEECCCBSCCCCCGGGTTCCSEEEEGGGHHHHHHH
T ss_pred cccccccccccCCCCCeEEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeCCCcccccccccccccCCcCCccchHHHHHH
Confidence 345 5778999877554444433 28988764211 1 22344455777888
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
|+++++.++. +++|...|||. .+.+.+++.+|||.+-+||+++.
T Consensus 335 I~~v~~~v~~---~iPIIg~GGI~s~eDa~e~l~aGAd~VqIgra~l~ 379 (415)
T 3i65_A 335 ICEMYNYTNK---QIPIIASGGIFSGLDALEKIEAGASVCQLYSCLVF 379 (415)
T ss_dssp HHHHHHHTTT---CSCEEECSSCCSHHHHHHHHHHTEEEEEESHHHHH
T ss_pred HHHHHHHhCC---CCCEEEECCCCCHHHHHHHHHcCCCEEEEcHHHHh
Confidence 8888877642 48899999999 88999999999999999999763
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00027 Score=68.98 Aligned_cols=128 Identities=20% Similarity=0.295 Sum_probs=84.1
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCC--
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG-- 202 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~G-- 202 (281)
.+.++.+.++|+|.|.++..........+.++++++. ++.+++. +. ...+..+.+.+ .+|.|.+ +.-||...
T Consensus 233 ~~~a~~l~~aG~d~I~id~a~g~~~~~~~~i~~ir~~~p~~~Vi~g-~v-~t~e~a~~l~~aGaD~I~V-g~g~Gs~~~t 309 (496)
T 4fxs_A 233 EERVKALVEAGVDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGG-NV-ATAEGARALIEAGVSAVKV-GIGPGSICTT 309 (496)
T ss_dssp HHHHHHHHHTTCSEEEEECSCTTSHHHHHHHHHHHHHCTTCCEEEE-EE-CSHHHHHHHHHHTCSEEEE-CSSCCTTBCH
T ss_pred HHHHHHHHhccCceEEeccccccchHHHHHHHHHHHHCCCceEEEc-cc-CcHHHHHHHHHhCCCEEEE-CCCCCcCccc
Confidence 4567788999999999986643223456788888876 5555442 11 24455666655 4999975 22233210
Q ss_pred C---ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 203 Q---SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 203 Q---~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+ .+-...+.-+.++.+...+. +++|.+||||. .+.+.+++++|||.+.+||++...
T Consensus 310 r~~~g~g~p~~~~i~~v~~~~~~~--~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~t 369 (496)
T 4fxs_A 310 RIVTGVGVPQITAIADAAGVANEY--GIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAGT 369 (496)
T ss_dssp HHHHCCCCCHHHHHHHHHHHHGGG--TCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ccccCCCccHHHHHHHHHHHhccC--CCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhcC
Confidence 0 01112345556666655432 47899999997 889999999999999999998754
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00028 Score=74.43 Aligned_cols=163 Identities=17% Similarity=0.207 Sum_probs=105.4
Q ss_pred HHHcCcC-CCCCeeEEEEe-cChhhHHH---HHHHcCCCEEEEcccccc--------------cccHHHHHHHHHHc-CC
Q 023494 107 VDALRPV-TDLPLDVHLMI-VEPEQRVP---DFIKAGADIVSVHCEQSS--------------TIHLHRTLNQIKDL-GA 166 (281)
Q Consensus 107 I~~ir~~-t~~~idaHLmv-~dp~~~i~---~~~~aGAd~Itvh~Ea~~--------------~~~i~~~l~~ik~~-G~ 166 (281)
++.+|+. ++.++.+-+|. .++..|.+ .+.++|+|.|.+|.-+.. .+.+.++++++|+. ++
T Consensus 625 i~~~~~~~~~~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~ 704 (1025)
T 1gte_A 625 VTELKADFPDNIVIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQI 704 (1025)
T ss_dssp HHHHHHHCTTSEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSS
T ss_pred HHHHHhcCCCCCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCC
Confidence 3444553 46788888876 57776644 455789999999965311 12256788888876 77
Q ss_pred cEEEEECCCCC-HHHHHHhh-c-cCCEEEEEe-------ec------C-----------CCCCCccchhHHHHHHHHHHH
Q 023494 167 KAGVVLNPATS-LSAIECVL-D-VVDLVLIMS-------VN------P-----------GFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 167 k~Glai~p~t~-ie~~~~~l-~-~vD~Ilvms-------V~------p-----------G~~GQ~f~~~~l~kI~~lr~l 219 (281)
.+.+=+.|+.. +..+...+ + .+|.|.+.. ++ | |..|....|..++-++++++.
T Consensus 705 Pv~vK~~~~~~~~~~~a~~~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~ 784 (1025)
T 1gte_A 705 PFFAKLTPNVTDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARA 784 (1025)
T ss_dssp CEEEEECSCSSCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHH
T ss_pred ceEEEeCCChHHHHHHHHHHHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHH
Confidence 88887777633 33333332 2 389987720 11 1 122333344456677777765
Q ss_pred hhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC-CCC-HHHHHHHHHHh
Q 023494 220 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG-AKD-YAEAIKGIKTS 273 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~-a~d-p~~~~~~l~~~ 273 (281)
.+ +++|...|||. .+.+.+++.+|||.+.+|++++. ..+ .....++|+..
T Consensus 785 ~~----~ipvi~~GGI~s~~da~~~l~~Ga~~v~vg~~~l~~~~~~~~~~~~~l~~~ 837 (1025)
T 1gte_A 785 LP----GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKAL 837 (1025)
T ss_dssp ST----TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHH
T ss_pred cC----CCCEEEecCcCCHHHHHHHHHcCCCEEEEeeccccCCccHHHHHHHHHHHH
Confidence 42 47899999996 89999999999999999999875 333 34455555543
|
| >3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00051 Score=61.62 Aligned_cols=172 Identities=17% Similarity=0.139 Sum_probs=112.1
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecChh-hHHHHHHHcCCCEEEEcccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPE-QRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp~-~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+.++.+...|+||+=+|..|+.+... +....++.. .+....| -|+.+. ..++.+.++|+++|.++--. +
T Consensus 28 ~~~e~a~~~g~D~vilDlEhav~~~~-----k~~~~l~a~~~~~~~~~V--RVn~~~~~di~~~ld~G~~gI~lP~v~-s 99 (261)
T 3qz6_A 28 DIVRIYAEAGLDYFIVDCEHAAYTFR-----EINHLVSVAKNAGVSVLV--RIPQVDRAHVQRLLDIGAEGFMIPGVQ-S 99 (261)
T ss_dssp THHHHHHHTTCSEEEEESSSSCCCHH-----HHHHHHHHHHHHTCEEEE--ECSSCCHHHHHHHHHHTCCEEEETTCC-S
T ss_pred HHHHHHhcCCcCEEEEeccCCCCCHH-----HHHHHHHHHhhcCCeEEE--EeCCCCHHHHHHHHhcCCCEEEECCcC-C
Confidence 44566777899999999999954321 222223221 2333333 333332 25778889999999998543 3
Q ss_pred cccHHHHHHHHHH-----------------------------cCCcEEEEECCCCCHHHHHHhh--ccCCEEEEEee---
Q 023494 151 TIHLHRTLNQIKD-----------------------------LGAKAGVVLNPATSLSAIECVL--DVVDLVLIMSV--- 196 (281)
Q Consensus 151 ~~~i~~~l~~ik~-----------------------------~G~k~Glai~p~t~ie~~~~~l--~~vD~IlvmsV--- 196 (281)
.+++.++.+.++- ..+++++.|....-++.+.+++ +.+|.+.+.+.
T Consensus 100 aed~~~~~~~~~~~p~G~Rg~~~~r~~~~g~~~~~~y~~~~~~~~~v~~mIEt~~av~~~~eIaa~~~vd~l~iG~~DL~ 179 (261)
T 3qz6_A 100 AETMRETVRLAKYPPLGERGVGGSIVTDFKPVNWAEWVQERNDEIFIMAQIEHVKAVEDIDSILAVQGVDAVIFGPRDLS 179 (261)
T ss_dssp HHHHHHHHHHHSCTTTCCCCCCCGGGGTTCCCCHHHHHHHHHTTCEEEEEECCHHHHHTHHHHHTSTTCCEEEECHHHHH
T ss_pred HHHHHHHHHHhccCCCCCcCcccchhhhccccchhhHHhcCCCCeEEEEEECCHHHHHHHHHHhCCCCCCEEEECHHHHH
Confidence 5667776666531 1356777775555567788887 56899988543
Q ss_pred -cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcH-HHHHHcCCcEEEEccc
Q 023494 197 -NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA-YKVIEAGANALVAGSA 256 (281)
Q Consensus 197 -~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i-~~~~~aGAD~~VvGSa 256 (281)
.-|..++...|..+.-++++..-....| .+..+=++ +++.+ +.+++.|++.+.+|+.
T Consensus 180 ~~lg~~~~~~~p~v~~a~~~iv~aa~aaG--~~~g~~~~-~~~~~~~~~~~~G~~~~s~~~D 238 (261)
T 3qz6_A 180 NDLGIIGQTEHPKVYECYEKVYRAADRQG--VVKGFFTA-ADAAKMGWAVERGAQMLLWSGD 238 (261)
T ss_dssp HHTTCTTCTTCHHHHHHHHHHHHHHHHHT--CEEEEEES-SCGGGGHHHHHTTCCEEEEEEH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHHHHHHhC--CCEEEEeC-CHHHHHHHHHHCCCCEEEEhhH
Confidence 3465566666777766666666655554 45444433 78888 8999999999999965
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00054 Score=64.60 Aligned_cols=148 Identities=19% Similarity=0.177 Sum_probs=86.4
Q ss_pred HHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc-----ccc-ccHHHHHHHHHH-cCCcEEEEECCCCCH
Q 023494 106 VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ-----SST-IHLHRTLNQIKD-LGAKAGVVLNPATSL 178 (281)
Q Consensus 106 ~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea-----~~~-~~i~~~l~~ik~-~G~k~Glai~p~t~i 178 (281)
.++++++. +.++.+-+...+..++.+.+.++|+|.+.+|... ... .+... +.++++ .++.+.+ ..-...
T Consensus 147 ~i~~~~~~-g~~v~~~v~~~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~-i~~l~~~~~~pvi~--ggi~t~ 222 (393)
T 2qr6_A 147 RIAQVRDS-GEIVAVRVSPQNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALN-LKEFIGSLDVPVIA--GGVNDY 222 (393)
T ss_dssp HHHHHHHT-TSCCEEEECTTTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----C-HHHHHHHCSSCEEE--ECCCSH
T ss_pred HHHHHhhc-CCeEEEEeCCccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHH-HHHHHHhcCCCEEE--CCcCCH
Confidence 44555553 5666665544455556667778999999998421 000 02333 344443 4655554 222445
Q ss_pred HHHHHhhc-cCCEEEEEeecCCCCCC---ccchhHHHHHHHHHHH----hhhcCC-CCeEEEecCCC-hhcHHHHHHcCC
Q 023494 179 SAIECVLD-VVDLVLIMSVNPGFGGQ---SFIESQVKKISDLRRM----CLEKGV-NPWIEVDGGVG-PKNAYKVIEAGA 248 (281)
Q Consensus 179 e~~~~~l~-~vD~IlvmsV~pG~~GQ---~f~~~~l~kI~~lr~l----~~~~~~-~~~I~VDGGI~-~e~i~~~~~aGA 248 (281)
+..+.+.+ .+|.|.+ +. -|.++. .+-+..++-|.++++. +++.+. +++|.+||||. .+++.+++.+||
T Consensus 223 e~a~~~~~~Gad~i~v-g~-Gg~~~~~~~~~g~~~~~~l~~v~~~~~~~~~~~~~~~ipvia~GGI~~~~dv~kalalGA 300 (393)
T 2qr6_A 223 TTALHMMRTGAVGIIV-GG-GENTNSLALGMEVSMATAIADVAAARRDYLDETGGRYVHIIADGSIENSGDVVKAIACGA 300 (393)
T ss_dssp HHHHHHHTTTCSEEEE-SC-CSCCHHHHTSCCCCHHHHHHHHHHHHHHHHHHHTSCCCEEEECSSCCSHHHHHHHHHHTC
T ss_pred HHHHHHHHcCCCEEEE-CC-CcccccccCCCCCChHHHHHHHHHHHHHhHhhcCCcceEEEEECCCCCHHHHHHHHHcCC
Confidence 66666665 4999987 32 111111 1112344555555444 121221 37899999996 889999999999
Q ss_pred cEEEEcccccC
Q 023494 249 NALVAGSAVFG 259 (281)
Q Consensus 249 D~~VvGSaIf~ 259 (281)
|.+.+|+++..
T Consensus 301 ~~V~iG~~~l~ 311 (393)
T 2qr6_A 301 DAVVLGSPLAR 311 (393)
T ss_dssp SEEEECGGGGG
T ss_pred CEEEECHHHHc
Confidence 99999999743
|
| >1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00089 Score=61.45 Aligned_cols=167 Identities=10% Similarity=0.133 Sum_probs=106.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcc-----cccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRF-----VPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~f-----vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+-.+.++.|.+.|+++|++ |.| +|.+.-..+.++.+++.++..+-+ ++.| .+-++.+.++|++.|.+-
T Consensus 29 ~k~~i~~~L~~~Gv~~IE~----g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~--l~~~-~~~i~~a~~~g~~~v~i~ 101 (307)
T 1ydo_A 29 DKITWINQLSRTGLSYIEI----TSFVHPKWIPALRDAIDVAKGIDREKGVTYAA--LVPN-QRGLENALEGGINEACVF 101 (307)
T ss_dssp HHHHHHHHHHTTTCSEEEE----EECSCTTTCGGGTTHHHHHHHSCCCTTCEEEE--ECCS-HHHHHHHHHHTCSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE----CCCcCcccccccCCHHHHHHHhhhcCCCeEEE--EeCC-HHhHHHHHhCCcCEEEEE
Confidence 3445567788899999988 434 344433335667776655555554 3344 335788999999998876
Q ss_pred ccccc--------------cccHHHHHHHHHHcCCcEEEEECCC--------CCHHHHHHhhcc-----CCEEEEEeecC
Q 023494 146 CEQSS--------------TIHLHRTLNQIKDLGAKAGVVLNPA--------TSLSAIECVLDV-----VDLVLIMSVNP 198 (281)
Q Consensus 146 ~Ea~~--------------~~~i~~~l~~ik~~G~k~Glai~p~--------t~ie~~~~~l~~-----vD~IlvmsV~p 198 (281)
.-... .+.+.+.++.+|+.|+++...+... ++.+.+.++++. +|.|.+-
T Consensus 102 ~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~---- 177 (307)
T 1ydo_A 102 MSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLG---- 177 (307)
T ss_dssp EESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHHHHHHHHHTCSCEEEE----
T ss_pred eecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEEc----
Confidence 54310 1235678899999999986544321 456666665542 7877663
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
-..|-....++.+.++.+++.++ +.+|.+ |-|....|.-..+++||+.|=
T Consensus 178 DT~G~~~P~~v~~lv~~l~~~~~----~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd 231 (307)
T 1ydo_A 178 DTIGAANPAQVETVLEALLARFP----ANQIALHFHDTRGTALANMVTALQMGITVFD 231 (307)
T ss_dssp CSSCCCCHHHHHHHHHHHHTTSC----GGGEEEECBGGGSCHHHHHHHHHHHTCCEEE
T ss_pred CCCCCcCHHHHHHHHHHHHHhCC----CCeEEEEECCCCchHHHHHHHHHHhCCCEEE
Confidence 22333233344555666665442 256776 789999999999999999774
|
| >2uva_G Fatty acid synthase beta subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; HET: FMN; 3.10A {Thermomyces lanuginosus} PDB: 2uvc_G* | Back alignment and structure |
|---|
Probab=97.61 E-value=0.00069 Score=75.98 Aligned_cols=145 Identities=19% Similarity=0.289 Sum_probs=101.7
Q ss_pred HHHHHcCcCC--CCCeeEEEEecChh------hHHHHHHHcCCCE--EEEcccccccccHHHHHHHHHHcCCcEEEEECC
Q 023494 105 LVVDALRPVT--DLPLDVHLMIVEPE------QRVPDFIKAGADI--VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174 (281)
Q Consensus 105 ~~I~~ir~~t--~~~idaHLmv~dp~------~~i~~~~~aGAd~--Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p 174 (281)
+.|+++|+.+ +.++-+.+|+.+|. ..++.+.+.|++. |+++.-. ...++..+.+++.|+++.... +
T Consensus 625 ~~i~~vk~~~~~~~p~gvN~~~~~p~~~~~~~~~~~~~~~~gv~i~gv~~~~G~---p~~e~~~~~l~~~gi~~i~~v-~ 700 (2060)
T 2uva_G 625 DAISKIEKAIPPGRGITVNLIYVNPRAMGWQIPLLGRLRADGVPIEGLTIGAGV---PSIEVANEYIQTLGIRHISFK-P 700 (2060)
T ss_dssp HHHHHHGGGSCTTCCEEEEEETTCTTHHHHHHHHHHHHHTTTCCEEEEEEESSC---CCHHHHHHHHHHSCCSEEEEC-C
T ss_pred HHHHHHHhhcccCCCeEecccccCcccchhHHHHHHHHHHcCCCcceEeecCCC---CCHHHHHHHHHHcCCeEEEec-C
Confidence 4567777776 68999999998887 4577788999999 8887653 345678888999999887433 3
Q ss_pred CCCHHHHHH---hhc-cCCEEEEEeecCC-CCCC-cc---chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH
Q 023494 175 ATSLSAIEC---VLD-VVDLVLIMSVNPG-FGGQ-SF---IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI 244 (281)
Q Consensus 175 ~t~ie~~~~---~l~-~vD~IlvmsV~pG-~~GQ-~f---~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~ 244 (281)
+ ..+..+. +.+ .+|.|.+|-++-+ .+|. .+ ....+..+.++++.. ++++.++|||. .+.+..++
T Consensus 701 ~-~~~a~~~v~~l~~aG~D~iV~~q~~G~eaGGH~g~~d~~~~~l~lv~~i~~~~-----~ipviaaGGI~~g~~i~aal 774 (2060)
T 2uva_G 701 G-SVDAIQQVINIAKANPTFPIILQWTGGRGGGHHSFEDFHQPILLMYSRIRKCS-----NIVLVAGSGFGGSEDTYPYL 774 (2060)
T ss_dssp C-SHHHHHHHHHHHHHCTTSCEEEEECCTTSSSSCCSCCSHHHHHHHHHHHHTST-----TEEEEEESSCCSHHHHHHHH
T ss_pred C-HHHHHHHHHHHHHcCCCEEEEeeeEcccCCCCCCcccccchHHHHHHHHHHHc-----CCCEEEeCCCCCHHHHHHHh
Confidence 3 3332222 233 4899886655521 1222 12 244556666666543 47899999999 77888999
Q ss_pred -----------HcCCcEEEEcccccC
Q 023494 245 -----------EAGANALVAGSAVFG 259 (281)
Q Consensus 245 -----------~aGAD~~VvGSaIf~ 259 (281)
.+|||.+-+||.+..
T Consensus 775 tg~ws~~~g~palGAdgV~~GT~f~~ 800 (2060)
T 2uva_G 775 TGSWSTKFGYPPMPFDGCMFGSRMMT 800 (2060)
T ss_dssp HTCGGGTTTSCCCCCSCEEESGGGGG
T ss_pred cCcchhhcCCCCCCCCEEEEchhhhc
Confidence 999999999988653
|
| >3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=8.5e-05 Score=67.99 Aligned_cols=93 Identities=13% Similarity=0.174 Sum_probs=49.8
Q ss_pred HHHHHHHHHHc-C--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC---CC
Q 023494 154 LHRTLNQIKDL-G--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG---VN 226 (281)
Q Consensus 154 i~~~l~~ik~~-G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~---~~ 226 (281)
+.+.++.+|+. + .++++.. .|. +++.+.++ .+|+|.+-+ |.+ +.++++++.++..+ .+
T Consensus 185 i~~ai~~~r~~~~~~~~i~vev--~tl-ee~~~A~~aGaD~I~ld~---------~~~---~~l~~~v~~l~~~~~g~~~ 249 (294)
T 3c2e_A 185 ITNAVKNARAVCGFAVKIEVEC--LSE-DEATEAIEAGADVIMLDN---------FKG---DGLKMCAQSLKNKWNGKKH 249 (294)
T ss_dssp HHHHHHHHHHHHCTTSCEEEEC--SSS-HHHHHHHHHTCSEEECCC---------------------------------C
T ss_pred HHHHHHHHHHhcCcCCeEEEec--CCH-HHHHHHHHcCCCEEEECC---------CCH---HHHHHHHHHhcccccCCCC
Confidence 45567777764 3 5777765 344 44444333 599997521 223 34445455544321 24
Q ss_pred CeEEEecCCChhcHHHHHHcCCcEEEEcccccCCC
Q 023494 227 PWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 227 ~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
++|++.|||+++|+.++.++|||.+.+||.+++++
T Consensus 250 v~I~ASGGIt~~ni~~~~~~GvD~i~vGs~i~~a~ 284 (294)
T 3c2e_A 250 FLLECSGGLNLDNLEEYLCDDIDIYSTSSIHQGTP 284 (294)
T ss_dssp CEEEEECCCCC------CCCSCSEEECGGGTSSCC
T ss_pred eEEEEECCCCHHHHHHHHHcCCCEEEEechhcCCC
Confidence 78999999999999999999999999999988654
|
| >2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00085 Score=60.28 Aligned_cols=175 Identities=15% Similarity=0.151 Sum_probs=113.1
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc--CCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP--VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~--~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
-.+.++.+...|+|++-+|..|+.+ .. ..+...++. ..+.+..|-+--.||. .++.+.++|++.|.++.-.
T Consensus 28 ~p~~~e~a~~~GaD~v~lDlE~~~~--~~---~~~~~~~~a~~~~~~~~~VRv~~~~~~-~i~~~l~~g~~~I~~P~V~- 100 (267)
T 2vws_A 28 TAYMAEIAATSGYDWLLIDGEHAPN--TI---QDLYHQLQAVAPYASQPVIRPVEGSKP-LIKQVLDIGAQTLLIPMVD- 100 (267)
T ss_dssp CHHHHHHHHTTCCSEEEEETTTSCC--CH---HHHHHHHHHHTTSSSEEEEECSSCCHH-HHHHHHHTTCCEEEECCCC-
T ss_pred CHHHHHHHHhCCCCEEEEcCCCCCC--CH---HHHHHHHHHHHhCCCcEEEEeCCCCHH-HHHHHHHhCCCEEEeCCCC-
Confidence 3456778888999999999888832 11 122222222 1234455544334543 5677889999999988654
Q ss_pred ccccHHHHHHHHHH-----------------c------------CCcEEEEECCCCCHHHHHHhhcc--CCEEEEEee--
Q 023494 150 STIHLHRTLNQIKD-----------------L------------GAKAGVVLNPATSLSAIECVLDV--VDLVLIMSV-- 196 (281)
Q Consensus 150 ~~~~i~~~l~~ik~-----------------~------------G~k~Glai~p~t~ie~~~~~l~~--vD~IlvmsV-- 196 (281)
+.++++++.+.++. + ...+++.|....-++.+.+++.. +|.+.+.+.
T Consensus 101 s~ee~~~~~~~~~~~p~G~Rg~~~~~~~~~~~g~~~~y~~~~~~~~~v~~~IEt~~av~~~~eIa~~~gvd~l~iG~~DL 180 (267)
T 2vws_A 101 TAEQARQVVSATRYPPYGERGVGASVARAARWGRIENYMAQVNDSLCLLVQVESKTALDNLDEILDVEGIDGVFIGPADL 180 (267)
T ss_dssp SHHHHHHHHHHTSCTTTSCCCSCGGGSGGGGGGTSTTHHHHHHHHCEEEEECCSHHHHHTHHHHHTSTTCCEEEECHHHH
T ss_pred CHHHHHHHHHHHcCCCCCccccccchhhhhhcCcchhhhhhcccccEEEEEECCHHHHHHHHHHhCCCCCCEEEEChHHH
Confidence 34566666665431 0 14566666444455777887754 899988543
Q ss_pred --cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 197 --NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 197 --~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
+-|..++...|..+.-++++..-...+| .+..+-.+ +++..+.+++.|.+.+.+|+.
T Consensus 181 ~~~lg~~~~~~~p~v~~a~~~iv~aa~aaG--~~~~v~~~-d~~~a~~~~~~G~~~~s~~~d 239 (267)
T 2vws_A 181 SASLGYPDNAGHPEVQRIIETSIRRIRAAG--KAAGFLAV-APDMAQQCLAWGANFVAVGVD 239 (267)
T ss_dssp HHHTTCSSSCCTHHHHHHHHHHHHHHHHTT--CEEEEECS-SHHHHHHHHHTTCCEEEEEEH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHhC--CeEEEecC-CHHHHHHHHHCCCCEEEEchH
Confidence 4566677777877777777766666654 34444333 788889999999999999965
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00094 Score=62.66 Aligned_cols=124 Identities=22% Similarity=0.308 Sum_probs=81.3
Q ss_pred HHHcCCCEEEEccccc--------c-----c-----------ccHHHHHHHHHHc-CC-cEEEEECCCC---------CH
Q 023494 134 FIKAGADIVSVHCEQS--------S-----T-----------IHLHRTLNQIKDL-GA-KAGVVLNPAT---------SL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~-----~-----------~~i~~~l~~ik~~-G~-k~Glai~p~t---------~i 178 (281)
+.++|+|.|-+|.-.. + . .-+.++++++|+. |. .+++=|+|.. +.
T Consensus 170 a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~~~ 249 (365)
T 2gou_A 170 AMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDADPI 249 (365)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSSHH
T ss_pred HHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCCCH
Confidence 4689999999997320 0 0 0145677787764 43 7888888742 33
Q ss_pred HHHHHhh---c--cCCEEEEEeecCCCCC-CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEE
Q 023494 179 SAIECVL---D--VVDLVLIMSVNPGFGG-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 179 e~~~~~l---~--~vD~IlvmsV~pG~~G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~ 251 (281)
+...+++ . .+|+|.+... .+.+ ..+ + ++.++++++.. +++|.+-|||+++++.++++.| ||.+
T Consensus 250 ~~~~~~a~~l~~~G~d~i~v~~~--~~~~~~~~-~--~~~~~~i~~~~-----~iPvi~~Ggi~~~~a~~~l~~g~aD~V 319 (365)
T 2gou_A 250 LTYTAAAALLNKHRIVYLHIAEV--DWDDAPDT-P--VSFKRALREAY-----QGVLIYAGRYNAEKAEQAINDGLADMI 319 (365)
T ss_dssp HHHHHHHHHHHHTTCSEEEEECC--BTTBCCCC-C--HHHHHHHHHHC-----CSEEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCC--CcCCCCCc-c--HHHHHHHHHHC-----CCcEEEeCCCCHHHHHHHHHCCCccee
Confidence 3333332 2 3899977532 1211 112 1 24455666554 4688899999999999999999 9999
Q ss_pred EEcccccCCCCHHHHH
Q 023494 252 VAGSAVFGAKDYAEAI 267 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~ 267 (281)
-+||+++..++....+
T Consensus 320 ~igR~~i~~P~l~~~~ 335 (365)
T 2gou_A 320 GFGRPFIANPDLPERL 335 (365)
T ss_dssp ECCHHHHHCTTHHHHH
T ss_pred hhcHHHHhCchHHHHH
Confidence 9999998777765444
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=97.51 E-value=0.0019 Score=59.93 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=83.0
Q ss_pred HHHcCCCEEEEcccc--------cc------------cc----cHHHHHHHHHHc-CCcEEEEECCCC------CHHHHH
Q 023494 134 FIKAGADIVSVHCEQ--------SS------------TI----HLHRTLNQIKDL-GAKAGVVLNPAT------SLSAIE 182 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea--------~~------------~~----~i~~~l~~ik~~-G~k~Glai~p~t------~ie~~~ 182 (281)
+.++|.|.|-+|.-. .+ .+ -+.++++++|+. +..+++=++|.. +.+...
T Consensus 153 a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~~~~~~ 232 (340)
T 3gr7_A 153 AKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLTAKDYV 232 (340)
T ss_dssp HHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCCGGGHH
T ss_pred HHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCHHHHH
Confidence 457899999999652 00 00 145778888775 778898888752 333333
Q ss_pred Hhh----c-cCCEEEEEeecCCCCCCc--cc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEE
Q 023494 183 CVL----D-VVDLVLIMSVNPGFGGQS--FI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALV 252 (281)
Q Consensus 183 ~~l----~-~vD~IlvmsV~pG~~GQ~--f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~V 252 (281)
+++ + .+|+|-+.. .+...++ .. ...++-++++++.. +++|.+-|||+ ++.+.++++.| ||.+.
T Consensus 233 ~la~~L~~~Gvd~i~vs~--g~~~~~~~~~~~~~~~~~~~~ik~~~-----~iPVi~~GgI~s~e~a~~~L~~G~aD~V~ 305 (340)
T 3gr7_A 233 PYAKRMKEQGVDLVDVSS--GAIVPARMNVYPGYQVPFAELIRREA-----DIPTGAVGLITSGWQAEEILQNGRADLVF 305 (340)
T ss_dssp HHHHHHHHTTCCEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHT-----TCCEEEESSCCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHcCCCEEEEec--CCccCCCCCCCccccHHHHHHHHHHc-----CCcEEeeCCCCCHHHHHHHHHCCCeeEEE
Confidence 332 2 289987752 1111111 11 12345566666654 37899999995 99999999999 99999
Q ss_pred EcccccCCCCHHHHH
Q 023494 253 AGSAVFGAKDYAEAI 267 (281)
Q Consensus 253 vGSaIf~a~dp~~~~ 267 (281)
+|++++..+|.-..+
T Consensus 306 iGR~~lanPdl~~ki 320 (340)
T 3gr7_A 306 LGRELLRNPYWPYAA 320 (340)
T ss_dssp ECHHHHHCTTHHHHH
T ss_pred ecHHHHhCchHHHHH
Confidence 999999777754443
|
| >2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A | Back alignment and structure |
|---|
Probab=97.50 E-value=0.001 Score=60.55 Aligned_cols=173 Identities=17% Similarity=0.164 Sum_probs=113.4
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHc-Cc--CCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDAL-RP--VTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~i-r~--~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+.++.+...|+|++-+|..|+ |. ..+.+... +. ..+.++.|-+--.||. .++.+.++|++.|.++.-.
T Consensus 50 p~~~e~a~~~GaD~v~lDlEh~---~~---~~~~~~~~l~a~~~~~~~~~VRv~~~d~~-di~~~ld~ga~~ImlP~V~- 121 (287)
T 2v5j_A 50 SYSAELLAGAGFDWLLIDGEHA---PN---NVQTVLTQLQAIAPYPSQPVVRPSWNDPV-QIKQLLDVGTQTLLVPMVQ- 121 (287)
T ss_dssp HHHHHHHHTSCCSEEEEESSSS---SC---CHHHHHHHHHHHTTSSSEEEEECSSSCHH-HHHHHHHTTCCEEEESCCC-
T ss_pred HHHHHHHHhCCCCEEEEeCCCc---cc---hHHHHHHHHHHHHhcCCCEEEEECCCCHH-HHHHHHhCCCCEEEeCCCC-
Confidence 3557778889999999999988 32 23333322 21 1244555543334554 5777889999999998654
Q ss_pred ccccHHHHHHHHHH-----c------------------------CCcEEEEECCCCCHHHHHHhhc--cCCEEEEEee--
Q 023494 150 STIHLHRTLNQIKD-----L------------------------GAKAGVVLNPATSLSAIECVLD--VVDLVLIMSV-- 196 (281)
Q Consensus 150 ~~~~i~~~l~~ik~-----~------------------------G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV-- 196 (281)
+.++++++++.++. . .+.+++.|....-++.+.+++. .+|.+.+.+.
T Consensus 122 saeea~~~~~~~~~~p~G~Rg~g~~~~ra~~~g~~~~y~~~~~~~~~vi~mIEt~~av~n~deIaa~~~vD~l~iG~~DL 201 (287)
T 2v5j_A 122 NADEAREAVRATRYPPAGIRGVGSALARASRWNRIPDYLQKANDQMCVLVQIETREAMKNLPQILDVEGVDGVFIGPADL 201 (287)
T ss_dssp SHHHHHHHHHHTSCTTTSCCCGGGTTTGGGTTTTSTTHHHHHHHHCEEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHH
T ss_pred CHHHHHHHHHHhccCccCccccccchhhhhhccchhhhHhhcCCCcEEEEEECcHHHHHHHHHHhCcCCCCEEEECHHHH
Confidence 34556666655431 0 1557777754445577788775 5888887543
Q ss_pred --cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 197 --NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 197 --~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.-|..++...|..+.-++++.......| .+..+-.+ +++.++.+++.|++.+.+|+.
T Consensus 202 s~~lg~~~~~~~p~v~~a~~~iv~aaraaG--~~~gv~~~-d~~~a~~~~~~G~~~~s~~~d 260 (287)
T 2v5j_A 202 SADMGYAGNPQHPEVQAAIEQAIVQIRESG--KAPGILIA-NEQLAKRYLELGALFVAVGVD 260 (287)
T ss_dssp HHHTTSTTCCCSHHHHHHHHHHHHHHHHTT--SEEEEECC-CHHHHHHHHHTTCSEEEEEEH
T ss_pred HHHhCCCCCCCCHHHHHHHHHHHHHHHHcC--CeeEEecC-CHHHHHHHHHhCCCEEEECcH
Confidence 4566667777887777777766666554 44444333 788888999999999999965
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0021 Score=60.03 Aligned_cols=125 Identities=14% Similarity=0.230 Sum_probs=81.1
Q ss_pred HHHHHHHc--CCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCC--
Q 023494 130 RVPDFIKA--GADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG-- 202 (281)
Q Consensus 130 ~i~~~~~a--GAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~G-- 202 (281)
.++.+.+. |++.+.+|..........+.++++|+. ++.+++-. -+..+..+...+ .+|.|.+ +..||...
T Consensus 122 ~~~~l~~~~~g~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~--v~t~e~A~~a~~aGaD~I~v-~~g~G~~~~~ 198 (351)
T 2c6q_A 122 QLEQILEAIPQVKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGN--VVTGEMVEELILSGADIIKV-GIGPGSVCTT 198 (351)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEE--ECSHHHHHHHHHTTCSEEEE-CSSCSTTBCH
T ss_pred HHHHHHhccCCCCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEe--CCCHHHHHHHHHhCCCEEEE-CCCCCcCcCc
Confidence 45556676 999999985321123456788888887 66665421 134666666655 4999966 55565311
Q ss_pred C---ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 203 Q---SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 203 Q---~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
. .+-...+.-+.++.+..+. .++++..||||. ...+.+++.+|||.+.+|+.+..
T Consensus 199 r~~~g~~~p~~~~l~~v~~~~~~--~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~fl~ 257 (351)
T 2c6q_A 199 RKKTGVGYPQLSAVMECADAAHG--LKGHIISDGGCSCPGDVAKAFGAGADFVMLGGMLAG 257 (351)
T ss_dssp HHHHCBCCCHHHHHHHHHHHHHH--TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cccCCCCccHHHHHHHHHHHHhh--cCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHHhc
Confidence 0 0111134444555554433 247899999999 88999999999999999999863
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=97.50 E-value=0.00054 Score=64.63 Aligned_cols=126 Identities=15% Similarity=0.140 Sum_probs=80.9
Q ss_pred HHHcCCCEEEEccccc--------cc-----c-----------cHHHHHHHHHHc-CC-cEEEEECCCC---------CH
Q 023494 134 FIKAGADIVSVHCEQS--------ST-----I-----------HLHRTLNQIKDL-GA-KAGVVLNPAT---------SL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~~-----~-----------~i~~~l~~ik~~-G~-k~Glai~p~t---------~i 178 (281)
+.++|+|.|-+|.-.. +. + -+.++++++|+. |. .+++-+++.. +.
T Consensus 175 a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~~~ 254 (377)
T 2r14_A 175 AKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPE 254 (377)
T ss_dssp HHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHH
T ss_pred HHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCCCH
Confidence 4678999999996420 00 0 156778888874 43 7999888752 23
Q ss_pred HHHHHhhc-----cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEE
Q 023494 179 SAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALV 252 (281)
Q Consensus 179 e~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~V 252 (281)
+...+++. .+|+|-+.. |...+......++.++++|+.. +++|.+-|||+++.+.++++.| ||.+.
T Consensus 255 ~~~~~la~~le~~Gvd~i~v~~---~~~~~~~~~~~~~~~~~ik~~~-----~iPvi~~Ggi~~~~a~~~l~~g~aD~V~ 326 (377)
T 2r14_A 255 AMAFYLAGELDRRGLAYLHFNE---PDWIGGDITYPEGFREQMRQRF-----KGGLIYCGNYDAGRAQARLDDNTADAVA 326 (377)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC---CC------CCCTTHHHHHHHHC-----CSEEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeC---CcccCCCCcchHHHHHHHHHHC-----CCCEEEECCCCHHHHHHHHHCCCceEEe
Confidence 33333322 389987643 2111110000133455555543 4689899999999999999998 99999
Q ss_pred EcccccCCCCHHHHH
Q 023494 253 AGSAVFGAKDYAEAI 267 (281)
Q Consensus 253 vGSaIf~a~dp~~~~ 267 (281)
+||+++..++.-..+
T Consensus 327 igR~~l~~P~l~~k~ 341 (377)
T 2r14_A 327 FGRPFIANPDLPERF 341 (377)
T ss_dssp ESHHHHHCTTHHHHH
T ss_pred ecHHHHhCchHHHHH
Confidence 999999877765444
|
| >3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00061 Score=63.28 Aligned_cols=186 Identities=13% Similarity=0.138 Sum_probs=114.9
Q ss_pred CHHHHHH-HHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc------C-CCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 71 KLGEQVK-AVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP------V-TDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 71 ~l~~~l~-~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~------~-t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
+..+.++ .|.+.|+++|++ |.|+.+ ....+.++++++ . ++..+.+ ++.+ .+.++.+.++|+|.|
T Consensus 42 ~k~~i~~~~L~~~Gv~~IE~----g~~~~~-~~~~~~v~~~~~~~~~~~~~~~~~i~~--l~~~-~~~i~~a~~~g~~~v 113 (337)
T 3ble_A 42 EKLNIAKFLLQKLNVDRVEI----ASARVS-KGELETVQKIMEWAATEQLTERIEILG--FVDG-NKTVDWIKDSGAKVL 113 (337)
T ss_dssp HHHHHHHHHHHTTCCSEEEE----EETTSC-TTHHHHHHHHHHHHHHTTCGGGEEEEE--ESST-THHHHHHHHHTCCEE
T ss_pred HHHHHHHHHHHHcCCCEEEE----eCCCCC-hhHHHHHHHHHhhhhhhccCCCCeEEE--Eccc-hhhHHHHHHCCCCEE
Confidence 3345566 788899999988 544321 122377877765 2 2223333 2332 237888999999999
Q ss_pred EEcccccc--------------cccHHHHHHHHHHcCCcEEEEECC-----CCCHHHHHHhhc-----cCCEEEEEeecC
Q 023494 143 SVHCEQSS--------------TIHLHRTLNQIKDLGAKAGVVLNP-----ATSLSAIECVLD-----VVDLVLIMSVNP 198 (281)
Q Consensus 143 tvh~Ea~~--------------~~~i~~~l~~ik~~G~k~Glai~p-----~t~ie~~~~~l~-----~vD~IlvmsV~p 198 (281)
.+-..... .+.+.+.++.+|+.|+++.+.+.. .++.+.+.++++ .+|.|.+-
T Consensus 114 ~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ga~~i~l~---- 189 (337)
T 3ble_A 114 NLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLEDWSNGFRNSPDYVKSLVEHLSKEHIERIFLP---- 189 (337)
T ss_dssp EEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEETHHHHHHHCHHHHHHHHHHHHTSCCSEEEEE----
T ss_pred EEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCCCcCCHHHHHHHHHHHHHcCCCEEEEe----
Confidence 88764311 134667888899999999887643 234554444433 27877653
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc-ccc---cCCCCHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG-SAV---FGAKDYAEAIKGI 270 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG-SaI---f~a~dp~~~~~~l 270 (281)
-..|-....++.+.++.+++.++ +.+|.+ |-|....|.-..+++||+.|=.- ..+ .++.+.++.+..|
T Consensus 190 DT~G~~~P~~v~~lv~~l~~~~p----~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlG~~aGN~~~E~lv~~L 265 (337)
T 3ble_A 190 DTLGVLSPEETFQGVDSLIQKYP----DIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASINGLGERAGNTPLEALVTTI 265 (337)
T ss_dssp CTTCCCCHHHHHHHHHHHHHHCT----TSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHH
T ss_pred cCCCCcCHHHHHHHHHHHHHhcC----CCeEEEEecCCcchHHHHHHHHHHhCCCEEEEecccccccccchhHHHHHHHH
Confidence 22343333445666777777653 356777 78999999999999999977432 111 2234555555555
Q ss_pred HH
Q 023494 271 KT 272 (281)
Q Consensus 271 ~~ 272 (281)
+.
T Consensus 266 ~~ 267 (337)
T 3ble_A 266 HD 267 (337)
T ss_dssp HH
T ss_pred HH
Confidence 44
|
| >3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00042 Score=63.48 Aligned_cols=89 Identities=17% Similarity=0.265 Sum_probs=63.6
Q ss_pred HHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 154 LHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 154 i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
+.+.++.+|+. ..++-+... | ++++++.+. .+|.|++ + .|.|+ .++++.++++. ++.++
T Consensus 194 i~~Av~~ar~~~p~~kIeVEv~--t-l~e~~eAl~aGaDiImL-------D--n~s~~---~l~~av~~~~~---~v~le 255 (300)
T 3l0g_A 194 ITLAIQRLRKNLKNEYIAIECD--N-ISQVEESLSNNVDMILL-------D--NMSIS---EIKKAVDIVNG---KSVLE 255 (300)
T ss_dssp HHHHHHHHHHHSSSCCEEEEES--S-HHHHHHHHHTTCSEEEE-------E--SCCHH---HHHHHHHHHTT---SSEEE
T ss_pred HHHHHHHHHHhCCCCCEEEEEC--C-HHHHHHHHHcCCCEEEE-------C--CCCHH---HHHHHHHhhcC---ceEEE
Confidence 66778888875 455555553 3 566666554 5998876 1 25454 44555555543 58999
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+.||||++|+.++.+.|+|++.+|+...++
T Consensus 256 aSGGIt~~~i~~~A~tGVD~IsvGalthsa 285 (300)
T 3l0g_A 256 VSGCVNIRNVRNIALTGVDYISIGCITNSF 285 (300)
T ss_dssp EESSCCTTTHHHHHTTTCSEEECGGGTSSC
T ss_pred EECCCCHHHHHHHHHcCCCEEEeCccccCC
Confidence 999999999999999999999999766543
|
| >2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0014 Score=62.22 Aligned_cols=49 Identities=18% Similarity=0.325 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+++-|.++++.+.. +++|.+||||. .+.+.+++..|||.+.+|++++.
T Consensus 292 ~~~~~l~~v~~av~~---~ipVia~GGI~~g~Dv~kalalGAd~V~iGr~~l~ 341 (392)
T 2nzl_A 292 ATIDVLPEIVEAVEG---KVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVW 341 (392)
T ss_dssp CHHHHHHHHHHHHTT---SSEEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred ChHHHHHHHHHHcCC---CCEEEEECCCCCHHHHHHHHHhCCCeeEECHHHHH
Confidence 345556666655432 47899999999 77899999999999999998654
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00053 Score=64.25 Aligned_cols=127 Identities=15% Similarity=0.094 Sum_probs=81.5
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-C--CcEEEEECCC-------CCHH
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-G--AKAGVVLNPA-------TSLS 179 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G--~k~Glai~p~-------t~ie 179 (281)
+.++|.|.|-+|.-.. + .+ -+.++++++|+. | ..+++=++|. .+.+
T Consensus 167 a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G~~~~~ 246 (363)
T 3l5l_A 167 ARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRDEQTLE 246 (363)
T ss_dssp HHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCHHHHHH
T ss_pred HHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCCCCCHH
Confidence 4578999999996420 0 00 145788888875 3 4588877764 2233
Q ss_pred HHHHhh----c-cCCEEEEEeecCCCCC-C--ccch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-C
Q 023494 180 AIECVL----D-VVDLVLIMSVNPGFGG-Q--SFIE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-A 248 (281)
Q Consensus 180 ~~~~~l----~-~vD~IlvmsV~pG~~G-Q--~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-A 248 (281)
...+++ + .+|+|-+..- +... + +..+ ..++-++++|+.. +++|.+.|||+ ++.+.++++.| |
T Consensus 247 ~~~~la~~L~~~Gvd~i~vs~g--~~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~GgI~s~e~a~~~l~~G~a 319 (363)
T 3l5l_A 247 ESIELARRFKAGGLDLLSVSVG--FTIPDTNIPWGPAFMGPIAERVRREA-----KLPVTSAWGFGTPQLAEAALQANQL 319 (363)
T ss_dssp HHHHHHHHHHHTTCCEEEEEEC--CCSSCCCCCCCTTTTHHHHHHHHHHH-----TCCEEECSSTTSHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHcCCCEEEEecC--ccccccccCCCcchhHHHHHHHHHHc-----CCcEEEeCCCCCHHHHHHHHHCCCc
Confidence 333332 2 2899877532 1111 1 0111 2344556666654 36899999995 99999999999 9
Q ss_pred cEEEEcccccCCCCHHHHH
Q 023494 249 NALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 249 D~~VvGSaIf~a~dp~~~~ 267 (281)
|.+.+||+++..+|....+
T Consensus 320 D~V~iGR~~lanPdl~~k~ 338 (363)
T 3l5l_A 320 DLVSVGRAHLADPHWAYFA 338 (363)
T ss_dssp SEEECCHHHHHCTTHHHHH
T ss_pred cEEEecHHHHhCchHHHHH
Confidence 9999999999877755444
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=97.43 E-value=0.001 Score=62.36 Aligned_cols=126 Identities=15% Similarity=0.211 Sum_probs=81.6
Q ss_pred HHHcCCCEEEEccccc--------cc-----c-----------cHHHHHHHHHHc-CC-cEEEEECCCC----------C
Q 023494 134 FIKAGADIVSVHCEQS--------ST-----I-----------HLHRTLNQIKDL-GA-KAGVVLNPAT----------S 177 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~~-----~-----------~i~~~l~~ik~~-G~-k~Glai~p~t----------~ 177 (281)
+.++|+|.|-+|.-.. +. + -+.++++++|+. |- .+++=|++.. +
T Consensus 170 a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~~~ 249 (364)
T 1vyr_A 170 AREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNE 249 (364)
T ss_dssp HHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTH
T ss_pred HHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCCCC
Confidence 4678999999997420 00 0 256778888874 32 6888777752 2
Q ss_pred HHHHHHh---hc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEE
Q 023494 178 LSAIECV---LD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 178 ie~~~~~---l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~ 251 (281)
.+...++ ++ .+|+|-+... ++.+.+ +..++.++++|+.. +++|.+-|||+++.+.++++.| ||.+
T Consensus 250 ~~~~~~~a~~l~~~G~d~i~v~~~--~~~~~~--~~~~~~~~~v~~~~-----~iPvi~~Ggit~~~a~~~l~~g~aD~V 320 (364)
T 1vyr_A 250 EADALYLIEELAKRGIAYLHMSET--DLAGGK--PYSEAFRQKVRERF-----HGVIIGAGAYTAEKAEDLIGKGLIDAV 320 (364)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECC--BTTBCC--CCCHHHHHHHHHHC-----CSEEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHHHHHHHhCCCEEEEecC--cccCCC--cccHHHHHHHHHHC-----CCCEEEECCcCHHHHHHHHHCCCccEE
Confidence 2332222 22 3899877531 111111 11234455666553 4689999999999999999998 9999
Q ss_pred EEcccccCCCCHHHHHH
Q 023494 252 VAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~~ 268 (281)
.+||+++..++....++
T Consensus 321 ~~gR~~l~~P~~~~~~~ 337 (364)
T 1vyr_A 321 AFGRDYIANPDLVARLQ 337 (364)
T ss_dssp EESHHHHHCTTHHHHHH
T ss_pred EECHHHHhChhHHHHHH
Confidence 99999998777654443
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=97.41 E-value=0.002 Score=59.64 Aligned_cols=145 Identities=16% Similarity=0.202 Sum_probs=89.6
Q ss_pred HHHHHcCcCCCCCeeEEEEecChh--hHHHHHHHcC--CCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCH
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPE--QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSL 178 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~--~~i~~~~~aG--Ad~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~i 178 (281)
.+++++++ .+.++-+.+. .++. +..+.+.++| ++++.++.-........+.++++++. +..+..- + -+..
T Consensus 85 ~~i~~~~~-~g~~v~v~~g-~~~~~~~~a~~~~~~g~~~~~i~i~~~~G~~~~~~~~i~~lr~~~~~~~vi~G-~-v~s~ 160 (336)
T 1ypf_A 85 SFIRDMQS-RGLIASISVG-VKEDEYEFVQQLAAEHLTPEYITIDIAHGHSNAVINMIQHIKKHLPESFVIAG-N-VGTP 160 (336)
T ss_dssp HHHHHHHH-TTCCCEEEEC-CSHHHHHHHHHHHHTTCCCSEEEEECSSCCSHHHHHHHHHHHHHCTTSEEEEE-E-ECSH
T ss_pred HHHHHHHh-cCCeEEEeCC-CCHHHHHHHHHHHhcCCCCCEEEEECCCCCcHHHHHHHHHHHHhCCCCEEEEC-C-cCCH
Confidence 44555544 3456666643 2333 3456678889 99998864211123355778888876 4444322 1 1346
Q ss_pred HHHHHhhc-cCCEEEEEeecCCCCC-Cc----c-ch-hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCc
Q 023494 179 SAIECVLD-VVDLVLIMSVNPGFGG-QS----F-IE-SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN 249 (281)
Q Consensus 179 e~~~~~l~-~vD~IlvmsV~pG~~G-Q~----f-~~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD 249 (281)
+..+.+.+ .+|.|.+ +.++|..- +. + .| .+++-|.++++.. +++|..||||. .+.+.+++.+|||
T Consensus 161 e~A~~a~~aGad~Ivv-s~hgG~~~~~~~~~~~g~~g~~~~~l~~v~~~~-----~ipVIa~GGI~~g~Dv~kalalGAd 234 (336)
T 1ypf_A 161 EAVRELENAGADATKV-GIGPGKVCITKIKTGFGTGGWQLAALRWCAKAA-----SKPIIADGGIRTNGDVAKSIRFGAT 234 (336)
T ss_dssp HHHHHHHHHTCSEEEE-CSSCSTTCHHHHHHSCSSTTCHHHHHHHHHHTC-----SSCEEEESCCCSTHHHHHHHHTTCS
T ss_pred HHHHHHHHcCCCEEEE-ecCCCceeecccccCcCCchhHHHHHHHHHHHc-----CCcEEEeCCCCCHHHHHHHHHcCCC
Confidence 66766665 4999977 44554210 00 0 00 0345555555432 57899999998 7899999999999
Q ss_pred EEEEcccccC
Q 023494 250 ALVAGSAVFG 259 (281)
Q Consensus 250 ~~VvGSaIf~ 259 (281)
.+.+|++++.
T Consensus 235 aV~iGr~~l~ 244 (336)
T 1ypf_A 235 MVMIGSLFAG 244 (336)
T ss_dssp EEEESGGGTT
T ss_pred EEEeChhhhc
Confidence 9999999873
|
| >3sgz_A Hydroxyacid oxidase 2; flavoprotein, homology, INH oxidoreductase-oxidoreductase inhibitor complex; HET: FMN HO6; 1.35A {Rattus norvegicus} PDB: 1tb3_A* | Back alignment and structure |
|---|
Probab=97.40 E-value=0.0015 Score=61.15 Aligned_cols=135 Identities=14% Similarity=0.212 Sum_probs=86.8
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCccc-------------c------c-------------------ccCCHHHHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFV-------------P------N-------------------ITIGPLVVD 108 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fv-------------p------n-------------------~~~G~~~I~ 108 (281)
-|-...++.+++++++|++.|-++| |.... | | -.+..+.++
T Consensus 132 ~d~~~~~~l~~ra~~aG~~alvlTv-D~p~~g~R~~d~r~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~w~~i~ 210 (352)
T 3sgz_A 132 SDWDFNKQMVQRAEALGFKALVITI-DTPVLGNRRRDKRNQLNLEANILKAALRALKEEKPTQSVPVLFPKASFCWNDLS 210 (352)
T ss_dssp SCHHHHHHHHHHHHHTTCCCEEEEC-SCSSCCCCHHHHHHHHHSCHHHHTTCC---------------CCCTTCCHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEEe-CCCCCCcchhhhhcCCCCCcccchhhhcccccccccchhhhhccCCCCCHHHHH
Confidence 3555667788999999999887653 32111 1 1 123346677
Q ss_pred HcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC
Q 023494 109 ALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188 (281)
Q Consensus 109 ~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v 188 (281)
.+|+.++.|+.+-.. .++ +....+.++|+|.|+++..-. . . .
T Consensus 211 ~lr~~~~~PvivK~v-~~~-e~A~~a~~~GaD~I~vsn~GG-~-------------------------~----------~ 252 (352)
T 3sgz_A 211 LLQSITRLPIILKGI-LTK-EDAELAMKHNVQGIVVSNHGG-R-------------------------Q----------L 252 (352)
T ss_dssp HHHHHCCSCEEEEEE-CSH-HHHHHHHHTTCSEEEECCGGG-T-------------------------S----------S
T ss_pred HHHHhcCCCEEEEec-CcH-HHHHHHHHcCCCEEEEeCCCC-C-------------------------c----------c
Confidence 777777777776442 333 345667778888887764310 0 0 0
Q ss_pred CEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 189 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
| ++ +.+++-|.++++.+.. +++|.+||||. .+.+.+++.+|||.+.+|++++
T Consensus 253 d-----------~~----~~~~~~L~~i~~av~~---~ipVia~GGI~~g~Dv~kaLalGA~aV~iGr~~l 305 (352)
T 3sgz_A 253 D-----------EV----SASIDALREVVAAVKG---KIEVYMDGGVRTGTDVLKALALGARCIFLGRPIL 305 (352)
T ss_dssp C-----------SS----CCHHHHHHHHHHHHTT---SSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHH
T ss_pred C-----------CC----ccHHHHHHHHHHHhCC---CCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 1 11 2345556666555432 47899999998 7788899999999999999865
|
| >1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=97.40 E-value=0.00025 Score=64.95 Aligned_cols=90 Identities=14% Similarity=0.240 Sum_probs=63.2
Q ss_pred cHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 153 HLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 153 ~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
++.+.++.+|+.. .++++... .++.+++.+. .+|+|.+- . +.+ +.++++++.++. +++|
T Consensus 194 ti~~ai~~~r~~~~~~kI~vev~---tlee~~eA~~aGaD~I~ld---~------~~~---e~l~~~v~~~~~---~~~I 255 (296)
T 1qap_A 194 SVRQAVEKAFWLHPDVPVEVEVE---NLDELDDALKAGADIIMLD---N------FNT---DQMREAVKRVNG---QARL 255 (296)
T ss_dssp SHHHHHHHHHHHSTTSCEEEEES---SHHHHHHHHHTTCSEEEES---S------CCH---HHHHHHHHTTCT---TCCE
T ss_pred CHHHHHHHHHHhCCCCcEEEEeC---CHHHHHHHHHcCCCEEEEC---C------CCH---HHHHHHHHHhCC---CCeE
Confidence 3567777777753 26777664 2355555444 58999762 1 333 444555555432 4789
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.|||+++|+.++.++|+|.+.+|+.++++
T Consensus 256 ~ASGGIt~~~i~~~a~~GvD~isvGsli~~a 286 (296)
T 1qap_A 256 EVSGNVTAETLREFAETGVDFISVGALTKHV 286 (296)
T ss_dssp EECCCSCHHHHHHHHHTTCSEEECSHHHHEE
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEeHHHcCC
Confidence 9999999999999999999999999977654
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0011 Score=63.83 Aligned_cols=195 Identities=19% Similarity=0.195 Sum_probs=118.3
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEee-----eCccccc-------------cc---CCH-HHHHHcCcC-----
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVM-----DGRFVPN-------------IT---IGP-LVVDALRPV----- 113 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDIm-----DG~fvpn-------------~~---~G~-~~I~~ir~~----- 113 (281)
.|-.+++=+.+..+.++.+.+.|...+.+--. .|+--|. +. .|. .+++.+++.
T Consensus 93 NPvglAAG~dk~~~~~~~l~~~GfG~v~~gtvT~~pq~GNp~PR~~rl~e~~~iiN~~GfnN~G~~~~~~~l~~~~~~~~ 172 (443)
T 1tv5_A 93 NPFGVAAGFDKNGVCIDSILKLGFSFIEIGTITPRGQTGNAKPRIFRDVESRSIINSCGFNNMGCDKVTENLILFRKRQE 172 (443)
T ss_dssp SSEEECTTTTTTCSSHHHHHTTTCSEEEEEEECSSCBCCSCSCCEEEETTTTEEEECCCSCBSCHHHHHHHHHHHHHHHH
T ss_pred CCcEECCcccCccHHHHHHHhcCCCEEEEeeeecCCCCCCCCccEEeccccceeeeccccCChhHHHHHHHHHHHhhhcc
Confidence 46777766655556677788889888877422 1211111 11 232 234444321
Q ss_pred -----CCCCeeEEEEecC-----hhhHHHHHHHc--CCCEEEEccccccc---------ccHHHHHHHHHHc--------
Q 023494 114 -----TDLPLDVHLMIVE-----PEQRVPDFIKA--GADIVSVHCEQSST---------IHLHRTLNQIKDL-------- 164 (281)
Q Consensus 114 -----t~~~idaHLmv~d-----p~~~i~~~~~a--GAd~Itvh~Ea~~~---------~~i~~~l~~ik~~-------- 164 (281)
+..++-+.+.-++ +..|.+.+..+ ++|+|.+..-+..+ +.+.++++.+++.
T Consensus 173 ~~~~~~~~~vgvni~~~~~~~~~~~dy~~~a~~l~~~aD~ieiNiscPnt~Glr~lq~~~~l~~il~~v~~~~~~~~~~~ 252 (443)
T 1tv5_A 173 EDKLLSKHIVGVSIGKNKDTVNIVDDLKYCINKIGRYADYIAINVSSPNTPGLRDNQEAGKLKNIILSVKEEIDNLEKNN 252 (443)
T ss_dssp HCSTTTTCEEEEEECCCTTCSCHHHHHHHHHHHHGGGCSEEEEECCCTTSTTGGGGGSHHHHHHHHHHHHHHHHHHC---
T ss_pred cccccCCceEEEEecCcccchHHHHHHHHHHHHHhcCCCEEEEeccCCCCcccccccCHHHHHHHHHHHHHHHhhhcccC
Confidence 2356888888776 66776654433 59999998754211 1244566666542
Q ss_pred -------------------------------------------CCc-EEEEECCCCCHHHHHHhhc-----cCCEEEEEe
Q 023494 165 -------------------------------------------GAK-AGVVLNPATSLSAIECVLD-----VVDLVLIMS 195 (281)
Q Consensus 165 -------------------------------------------G~k-~Glai~p~t~ie~~~~~l~-----~vD~Ilvms 195 (281)
.+. +.+=+.|+...+.+.++.+ .+|.|.+..
T Consensus 253 ~~~~g~~~~~~~~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~n 332 (443)
T 1tv5_A 253 IMNDESTYNEDNKIVEKKNNFNKNNSHMMKDAKDNFLWFNTTKKKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISN 332 (443)
T ss_dssp -----------------------------------CCCCSSSSSCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred ccccccCHHHHHHHHHHhhcccccchhhhhhhhhcchhcccCCCCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEC
Confidence 344 6777888866544433322 389887642
Q ss_pred ecC----------CC---CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 196 VNP----------GF---GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 196 V~p----------G~---~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
.-. +. .|....|..++-++++++... .+++|...|||. .+.+.+++.+|||.+-+||+++
T Consensus 333 tt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~---~~iPVIg~GGI~s~~DA~e~l~aGAd~Vqigrall 406 (443)
T 1tv5_A 333 TTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTN---KQIPIIASGGIFSGLDALEKIEAGASVCQLYSCLV 406 (443)
T ss_dssp CBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTT---TCSCEEEESSCCSHHHHHHHHHTTEEEEEESHHHH
T ss_pred CCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcC---CCCcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 110 11 122223445677777777653 258899999998 8899999999999999999954
|
| >3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00086 Score=61.43 Aligned_cols=90 Identities=19% Similarity=0.255 Sum_probs=62.7
Q ss_pred cHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 153 HLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 153 ~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+.+.++.+|+. +.++.+.+. .++.+++.+. .+|+|++= .|.++. ++++.+.+. .+++|
T Consensus 195 ~i~~Av~~~r~~~p~~~ieVEvd---tlde~~eAl~aGaD~I~LD---------n~~~~~---l~~av~~i~---~~v~i 256 (298)
T 3gnn_A 195 GVGEALDAAFALNAEVPVQIEVE---TLDQLRTALAHGARSVLLD---------NFTLDM---MRDAVRVTE---GRAVL 256 (298)
T ss_dssp CHHHHHHHHHHHC--CCCEEEES---SHHHHHHHHHTTCEEEEEE---------SCCHHH---HHHHHHHHT---TSEEE
T ss_pred CHHHHHHHHHHhCCCCCEEEEeC---CHHHHHHHHHcCCCEEEEC---------CCCHHH---HHHHHHHhC---CCCeE
Confidence 366788888876 456666653 3455555544 58988762 144443 444444442 25889
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|+.++.+.|+|++.+|+...++
T Consensus 257 eaSGGI~~~~i~~~a~tGVD~isvG~lt~sa 287 (298)
T 3gnn_A 257 EVSGGVNFDTVRAIAETGVDRISIGALTKDV 287 (298)
T ss_dssp EEESSCSTTTHHHHHHTTCSEEECGGGGTSC
T ss_pred EEEcCCCHHHHHHHHHcCCCEEEECCeecCC
Confidence 9999999999999999999999999977654
|
| >3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=97.36 E-value=0.00042 Score=63.16 Aligned_cols=89 Identities=15% Similarity=0.262 Sum_probs=64.0
Q ss_pred cHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 153 HLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 153 ~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+.+.++.+|+.+ .++.+... .++++++.+. .+|+|++= .|.++ .++++.+.++. +++|
T Consensus 184 ~i~~Av~~ar~~~~~~~IeVEv~---tl~ea~eAl~aGaD~I~LD---------n~~~~---~l~~av~~~~~---~v~i 245 (287)
T 3tqv_A 184 GIAKAVTKAKKLDSNKVVEVEVT---NLDELNQAIAAKADIVMLD---------NFSGE---DIDIAVSIARG---KVAL 245 (287)
T ss_dssp CHHHHHHHHHHHCTTSCEEEEES---SHHHHHHHHHTTCSEEEEE---------SCCHH---HHHHHHHHHTT---TCEE
T ss_pred CHHHHHHHHHhhCCCCcEEEEeC---CHHHHHHHHHcCCCEEEEc---------CCCHH---HHHHHHHhhcC---CceE
Confidence 3677888888764 66666553 3466666554 59999872 14444 44555555532 5899
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
++.||||++|++++.+.|+|++.+|+.+-+
T Consensus 246 eaSGGIt~~~i~~~a~tGVD~IsvGalt~s 275 (287)
T 3tqv_A 246 EVSGNIDRNSIVAIAKTGVDFISVGAITKH 275 (287)
T ss_dssp EEESSCCTTTHHHHHTTTCSEEECSHHHHS
T ss_pred EEECCCCHHHHHHHHHcCCCEEEEChhhcC
Confidence 999999999999999999999999976644
|
| >3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.001 Score=62.52 Aligned_cols=141 Identities=15% Similarity=0.122 Sum_probs=85.5
Q ss_pred CCCCCeeEEEEecChhh-HHHHHHHcCCCEEEEccccc----------ccccHHHHHHHHHHc-CCcEEEE-ECCCCCHH
Q 023494 113 VTDLPLDVHLMIVEPEQ-RVPDFIKAGADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVV-LNPATSLS 179 (281)
Q Consensus 113 ~t~~~idaHLmv~dp~~-~i~~~~~aGAd~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Gla-i~p~t~ie 179 (281)
.++.++.+.+-...+.. +.+..-.+|||.+.+|.... ...++.+.++++++. ++.+.+- +.-....+
T Consensus 142 ~P~~~~ianig~~~~~e~~~~~ve~~~adal~ihln~~qe~~~p~Gd~~~~~~~~~I~~l~~~~~~PVivK~vg~g~s~e 221 (365)
T 3sr7_A 142 RPHLLLATNIGLDKPYQAGLQAVRDLQPLFLQVHINLMQELLMPEGEREFRSWKKHLSDYAKKLQLPFILKEVGFGMDVK 221 (365)
T ss_dssp ---CCEEEEEETTSCHHHHHHHHHHHCCSCEEEEECHHHHHTSSSSCCCCHHHHHHHHHHHHHCCSCEEEEECSSCCCHH
T ss_pred CCCCcEEEEeCCCCCHHHHHHHHHhcCCCEEEEeccccccccCCCCCCcHHHHHHHHHHHHHhhCCCEEEEECCCCCCHH
Confidence 36788888887765554 34444578999999995421 011344677787765 6666665 32224556
Q ss_pred HHHHhhc-cCCEEEEEeecCCCCC-C-------------ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHH
Q 023494 180 AIECVLD-VVDLVLIMSVNPGFGG-Q-------------SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 243 (281)
Q Consensus 180 ~~~~~l~-~vD~IlvmsV~pG~~G-Q-------------~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~ 243 (281)
..+.+.+ .+|.|.+- -+.|..- | .|-..+..-|.+++.. ..+++|.+||||. ...+.++
T Consensus 222 ~A~~l~~aGad~I~V~-g~GGt~~a~ie~~r~~~~~~~~~~g~pt~~~L~~v~~~----~~~ipvia~GGI~~g~Dv~Ka 296 (365)
T 3sr7_A 222 TIQTAIDLGVKTVDIS-GRGGTSFAYIENRRGGNRSYLNQWGQTTAQVLLNAQPL----MDKVEILASGGIRHPLDIIKA 296 (365)
T ss_dssp HHHHHHHHTCCEEECC-CBC--------------CGGGTTCSCBHHHHHHHHGGG----TTTSEEEECSSCCSHHHHHHH
T ss_pred HHHHHHHcCCCEEEEe-CCCCcccchhhccccccccccccccccHHHHHHHHHHh----cCCCeEEEeCCCCCHHHHHHH
Confidence 6666655 48999763 2222110 0 1111223344443322 2257899999998 7788888
Q ss_pred HHcCCcEEEEccccc
Q 023494 244 IEAGANALVAGSAVF 258 (281)
Q Consensus 244 ~~aGAD~~VvGSaIf 258 (281)
+.+|||.+-+|++++
T Consensus 297 LalGAdaV~ig~~~l 311 (365)
T 3sr7_A 297 LVLGAKAVGLSRTML 311 (365)
T ss_dssp HHHTCSEEEESHHHH
T ss_pred HHcCCCEEEECHHHH
Confidence 999999999999876
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=97.35 E-value=0.011 Score=56.91 Aligned_cols=182 Identities=22% Similarity=0.253 Sum_probs=105.7
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcC-----CCCCeeEEEEec---ChhhHHHHHHHcCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPV-----TDLPLDVHLMIV---EPEQRVPDFIKAGA 139 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~-----t~~~idaHLmv~---dp~~~i~~~~~aGA 139 (281)
..+.+.++.+.+.++..+.| .| |.++=.++. .++++.+.+. ....+.+-..+. +-.+.++.+.++|+
T Consensus 170 ~~l~~a~~~m~~~~~~~lpV--Vd~~g~lvGivt~-~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~ 246 (491)
T 1zfj_A 170 TDLETAERILHEHRIEKLPL--VDNSGRLSGLITI-KDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGA 246 (491)
T ss_dssp CCHHHHHHHHHHTTCSEEEE--ECTTSBEEEEEEH-HHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHcCCCEEEE--EcCCCcEEEEEEH-HHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCC
Confidence 47899999999999888764 44 322221222 3445554420 111222222332 12345777889999
Q ss_pred CEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC-CC----ccchhHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG-GQ----SFIESQVK 211 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~-GQ----~f~~~~l~ 211 (281)
|.+.++..........+.++++++. ++.+. .=+. ...+....+++ .+|.|.+ +..+|.- +. .+....++
T Consensus 247 d~ivi~~a~g~~~~~~~~i~~l~~~~p~~pvi-~G~v-~t~~~a~~~~~~Gad~I~v-g~g~g~~~~tr~~~~~~~p~~~ 323 (491)
T 1zfj_A 247 DAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLI-AGNI-ATAEGARALYDAGVDVVKV-GIGPGSICTTRVVAGVGVPQVT 323 (491)
T ss_dssp SEEEECCSCTTCHHHHHHHHHHHHHCSSSCEE-EEEE-CSHHHHHHHHHTTCSEEEE-CSSCCTTBCHHHHTCCCCCHHH
T ss_pred CeEEEeeecCcchhHHHHHHHHHHHCCCCcEe-CCCc-cCHHHHHHHHHcCCCEEEE-CccCCcceEEeeecCCCCCcHH
Confidence 9999997422122344566666654 33333 2111 23455555554 4899876 4444320 00 01112344
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
-++++...... .+++|.+||||+ .+.+.+++++|||.+++|+++..
T Consensus 324 ~l~~~~~~~~~--~~ipvia~GGi~~~~di~kal~~GA~~v~vG~~~~~ 370 (491)
T 1zfj_A 324 AIYDAAAVARE--YGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAG 370 (491)
T ss_dssp HHHHHHHHHHH--TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred HHHHHHHHHhh--cCCCEEeeCCCCCHHHHHHHHHcCCcceeeCHHhhC
Confidence 45555554433 257899999998 88999999999999999999874
|
| >2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=97.33 E-value=0.0032 Score=60.97 Aligned_cols=168 Identities=18% Similarity=0.212 Sum_probs=105.7
Q ss_pred HHHHHHHcCCCeEEEEeeeCccccc---c-cCCHHHHHHcCcC-CCCCeeEEEEecC-------h----hhHHHHHHHcC
Q 023494 75 QVKAVELAGCDWIHVDVMDGRFVPN---I-TIGPLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFIKAG 138 (281)
Q Consensus 75 ~l~~l~~~G~d~iHiDImDG~fvpn---~-~~G~~~I~~ir~~-t~~~idaHLmv~d-------p----~~~i~~~~~aG 138 (281)
.++.|.+.|+++|++--- +.|+.. + .-..+.++.+++. ++..+.+.+-..| | ..+++.+.++|
T Consensus 35 Ia~~L~~~Gv~~IE~g~~-atF~~~~r~~~~d~~e~l~~i~~~~~~~~l~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~G 113 (464)
T 2nx9_A 35 IAQQLDQIGYWSLECWGG-ATFDSCIRFLGEDPWQRLRLLKQAMPNTPLQMLLRGQNLLGYRHYADDVVDTFVERAVKNG 113 (464)
T ss_dssp GHHHHHTSCCSEEEEEET-THHHHHHHTTCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcCCCEEEeCcC-ccccchhhccCCCHHHHHHHHHHhCCCCeEEEEeccccccCcccccchhhHHHHHHHHhCC
Confidence 345677889999888410 013221 1 1123567777663 5566665432121 1 24578888999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
+|.|.+-.-......+.+.++.+|+.|+++-..+ .+.++.+.+.++++. +|.|.+-- ..|-....++
T Consensus 114 vd~i~if~~~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~l~D----T~G~~~P~~v 189 (464)
T 2nx9_A 114 MDVFRVFDAMNDVRNMQQALQAVKKMGAHAQGTLCYTTSPVHNLQTWVDVAQQLAELGVDSIALKD----MAGILTPYAA 189 (464)
T ss_dssp CCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCCTTCCHHHHHHHHHHHHHTTCSEEEEEE----TTSCCCHHHH
T ss_pred cCEEEEEEecCHHHHHHHHHHHHHHCCCEEEEEEEeeeCCCCCHHHHHHHHHHHHHCCCCEEEEcC----CCCCcCHHHH
Confidence 9999987554335678899999999999986655 333455555554432 78776531 2232223344
Q ss_pred HHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 210 VKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
.+.++.+++.+ +.+|.+ |.|....|.-..+++|||.|=
T Consensus 190 ~~lv~~l~~~~-----~~~i~~H~Hnd~GlAvAN~laAv~AGa~~VD 231 (464)
T 2nx9_A 190 EELVSTLKKQV-----DVELHLHCHSTAGLADMTLLKAIEAGVDRVD 231 (464)
T ss_dssp HHHHHHHHHHC-----CSCEEEEECCTTSCHHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHhc-----CCeEEEEECCCCChHHHHHHHHHHhCCCEEE
Confidence 55566666654 356776 789999999999999999763
|
| >2nli_A Lactate oxidase; flavoenzyme, FMN, D-lactate, oxidoreducta; HET: FMN; 1.59A {Aerococcus viridans} PDB: 2zfa_A* 2du2_A* 2e77_A* 2j6x_A* | Back alignment and structure |
|---|
Probab=97.30 E-value=0.0027 Score=59.60 Aligned_cols=49 Identities=18% Similarity=0.260 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+++-|.++++.+.. +++|.+||||. .+.+.+++..|||.+-+|+.+..
T Consensus 269 ~~~~~l~~v~~~v~~---~ipVia~GGI~~g~D~~kalalGAd~V~iGr~~l~ 318 (368)
T 2nli_A 269 GSFDTLPAIAERVNK---RVPIVFDSGVRRGEHVAKALASGADVVALGRPVLF 318 (368)
T ss_dssp CHHHHHHHHHHHHTT---SSCEEECSSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred ChHHHHHHHHHHhCC---CCeEEEECCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 345666666665532 47899999999 77899999999999999988653
|
| >1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0 | Back alignment and structure |
|---|
Probab=97.29 E-value=0.002 Score=60.40 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=39.0
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..++-|.++++.+.. +++|..+|||+ .+++.+++.+|||.+.+|++++.
T Consensus 265 ~~~~~l~~v~~~~~~---~ipvia~GGI~~~~D~~k~l~~GAdaV~iGr~~l~ 314 (370)
T 1gox_A 265 ATIMALEEVVKAAQG---RIPVFLDGGVRRGTDVFKALALGAAGVFIGRPVVF 314 (370)
T ss_dssp CHHHHHHHHHHHTTT---SSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred cHHHHHHHHHHHhCC---CCEEEEECCCCCHHHHHHHHHcCCCEEeecHHHHH
Confidence 356666777665532 47899999997 77999999999999999998764
|
| >3m9y_A Triosephosphate isomerase; TIM barrel, glycolysis, gluconeogenesis, pentose; HET: CIT; 1.90A {Staphylococcus aureus} SCOP: c.1.1.1 PDB: 3uwv_A* 3uwu_A* 3uww_A* 3uwy_A 3uwz_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.0048 Score=55.23 Aligned_cols=132 Identities=13% Similarity=0.230 Sum_probs=85.1
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhccCC
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDVVD 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~vD 189 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+.+.+-+.- .++ .+...+..++
T Consensus 83 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~V~~Kv~~Al~~GL~pIlCvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 158 (254)
T 3m9y_A 83 PVALADLGVKYVVIGHSERRELFHE--TDEEINKKAHAIFKHGMTPIICVGE--TDEERESGKANDVVGEQVKKAVAGLS 158 (254)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEECcccccCccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHHCCCHHHHHHHHHHHHHhcCC
Confidence 578899999999985 44 2455666678889999999887752 332 2333344332
Q ss_pred -------EEEEEeecC-CCCCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEc
Q 023494 190 -------LVLIMSVNP-GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAG 254 (281)
Q Consensus 190 -------~IlvmsV~p-G~~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvG 254 (281)
+|.+=.|.. | +|..-.|+..+. .+.+|+.+.+. ..+++|.-.|+++++|+.++. +.++|.+-+|
T Consensus 159 ~~~~~~vvIAYEPvWAIG-TG~~At~e~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~~l~~~~diDG~LVG 237 (254)
T 3m9y_A 159 EDQLKSVVIAYEPIWAIG-TGKSSTSEDANEMCAFVRQTIADLSSKEVSEATRIQYGGSVKPNNIKEYMAQTDIDGALVG 237 (254)
T ss_dssp HHHHHHCEEEECCGGGCC---CCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSEEEECSCCCTTTHHHHHTSTTCCEEEES
T ss_pred HHHhCCEEEEECChhhhc-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHHcCCCCCeEEee
Confidence 444422221 4 355444444333 33345544321 235789999999999999987 8899999999
Q ss_pred ccccCCCCHHHHH
Q 023494 255 SAVFGAKDYAEAI 267 (281)
Q Consensus 255 SaIf~a~dp~~~~ 267 (281)
++-.++++..+.+
T Consensus 238 gASL~~~~F~~Ii 250 (254)
T 3m9y_A 238 GASLKVEDFVQLL 250 (254)
T ss_dssp GGGSSHHHHHHHH
T ss_pred HHhhCHHHHHHHH
Confidence 9988766554443
|
| >3zen_D Fatty acid synthase; transferase, mycolic acid biosynthesis, multifunctional ENZY substrate channeling; HET: FMN; 7.50A {Mycobacterium smegmatis} PDB: 4b3y_A* | Back alignment and structure |
|---|
Probab=97.29 E-value=0.00021 Score=82.45 Aligned_cols=153 Identities=14% Similarity=0.180 Sum_probs=94.0
Q ss_pred HHHHHcCcCC--CCCeeEEEEecChh---------hHHHHHHHcC--CCEEEEcccccccccHHHHHHHHHHcCCcEEEE
Q 023494 105 LVVDALRPVT--DLPLDVHLMIVEPE---------QRVPDFIKAG--ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV 171 (281)
Q Consensus 105 ~~I~~ir~~t--~~~idaHLmv~dp~---------~~i~~~~~aG--Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla 171 (281)
+.|+.+|+.+ +.++-+-+|..||. ++++.+.+.| +|+|+++.-..+.++..++++.+|++|+++.-.
T Consensus 470 ~~i~~~r~~~~~~~p~~vNl~~~~p~~~~~~~g~~~~~~~~~~~g~~vdgv~~~aG~P~~ee~~~~i~~l~~~Gi~~i~~ 549 (3089)
T 3zen_D 470 DRIAELETLLEPGRAIQFNTLFLDPYLWKLQVGGKRLVQRARQSGAPIDGLVVSAGIPDLEEAVDIIDELNEVGISHVVF 549 (3089)
T ss_dssp HHHHHHHHHSCTTCCCEEEEECSCHHHHHHHHHHHHHHHHHHHTTCSCCEEEEESSCCCHHHHHHHHTSTTHHHHCSEEE
T ss_pred HHHHHHHHhcCCCCceeechhhcChhhhhhccCHHHHHHHHHHcCCCceEEEEeCCCCchhHhHHHHHHHHHcCCEEEEE
Confidence 4566667665 67888999999984 4677889999 888999854211345567888888888775443
Q ss_pred ECCCCCH-HHHHHhhcc-CC---EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH-
Q 023494 172 LNPATSL-SAIECVLDV-VD---LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI- 244 (281)
Q Consensus 172 i~p~t~i-e~~~~~l~~-vD---~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~- 244 (281)
.-+++.. ..+..+... .+ .|.+.+++.| |..........|-.....+.+ ..++++.+.|||. .+.+..+.
T Consensus 550 ~~~t~~~a~~~~~i~~d~~~~~y~vv~~G~eaG--GH~g~~~~~~ll~~~~~~ir~-~~~iPViaaGGI~d~~~vaaal~ 626 (3089)
T 3zen_D 550 KPGTVEQIRSVIRIAAEVPTKPVIVHIEGGRAG--GHHSWEDLDDLLLATYSELRS-RSNITICVGGGIGTPERSAEYLS 626 (3089)
T ss_dssp CCCSHHHHHHHHHHHTTSTTSCEEEEECCSSSS--EECCSCCHHHHHHHHHHHHTT-CTTEEEEEESSCCCTTTTHHHHH
T ss_pred eCCCHHHHHHHHHhhhhcCCCcEEEEEeCCCcC--CCCCcccHHHHHHHHHHHHhh-cCCCeEEEEeCCCCHHHHHHHhc
Confidence 3322222 133333222 22 3444433332 222112222333112222211 2358999999997 88998888
Q ss_pred ----------HcCCcEEEEcccccCC
Q 023494 245 ----------EAGANALVAGSAVFGA 260 (281)
Q Consensus 245 ----------~aGAD~~VvGSaIf~a 260 (281)
..|||.+++||++...
T Consensus 627 g~ws~~~~~p~lGAdGV~vGTrfl~t 652 (3089)
T 3zen_D 627 GRWAEVHGYPLMPIDGILVGTAAMAT 652 (3089)
T ss_dssp TGGGGTTTCCCCCCSEEECSSTTTTC
T ss_pred cccccccCccCCCCCEEEecHHHHhC
Confidence 9999999999997753
|
| >1yya_A Triosephosphate isomerase; riken structural genomics/proteom initiative, RSGI, structural genomics; 1.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0041 Score=55.58 Aligned_cols=130 Identities=15% Similarity=0.246 Sum_probs=87.3
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+.- ..+ .+...+..+
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--~leere~g~t~~vv~~Ql~~~l~~~~ 154 (250)
T 1yya_A 79 ARMLSDLGCRYAIVGHSERRRYHGE--TDALVAEKAKRLLEEGITPILCVGE--PLEVREKGEAVPYTLRQLRGSLEGVE 154 (250)
T ss_dssp HHHHHHTTCSEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCCEEEeCchhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 678899999999985 44 3456777888899999999887753 332 223333332
Q ss_pred -C-----EEEEEeecC----CCCCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHHc-CCcEE
Q 023494 189 -D-----LVLIMSVNP----GFGGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIEA-GANAL 251 (281)
Q Consensus 189 -D-----~IlvmsV~p----G~~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~a-GAD~~ 251 (281)
+ +|.+ +| |. |+.-.|+..+ -.+.+|+.+.+. ..+++|.-.|+|+++|+.++.+. ++|.+
T Consensus 155 ~~~~~~vvIAY---EPvWAIGT-G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~ 230 (250)
T 1yya_A 155 PPGPEALVIAY---EPVWAIGT-GKNATPEDAEAMHQAIRKALSERYGEAFASRVRILYGGSVNPKNFADLLSMPNVDGG 230 (250)
T ss_dssp CSSGGGCEEEE---CCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTCEEEEESSCCTTTHHHHHTSTTCCEE
T ss_pred HHHcCcEEEEE---CCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCee
Confidence 3 3433 55 43 4444444432 234444443321 12578889999999999999887 99999
Q ss_pred EEcccccCCCCHHHHHH
Q 023494 252 VAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~~ 268 (281)
-+|++..+++|+.+.++
T Consensus 231 LVGgAsL~a~~F~~ii~ 247 (250)
T 1yya_A 231 LVGGASLELESFLALLR 247 (250)
T ss_dssp EESGGGSSHHHHHHHHH
T ss_pred EeeHHHhChHHHHHHHH
Confidence 99999998777765543
|
| >3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0039 Score=57.56 Aligned_cols=189 Identities=14% Similarity=0.131 Sum_probs=108.7
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccc-ccccC-------CHHHHHHcCcCCCCCeeEEEEecC--hhhHHHH--HHHcC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFV-PNITI-------GPLVVDALRPVTDLPLDVHLMIVE--PEQRVPD--FIKAG 138 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fv-pn~~~-------G~~~I~~ir~~t~~~idaHLmv~d--p~~~i~~--~~~aG 138 (281)
+..+.++.|.++|+++|++- .|+ |.-.| ..+.++.|++.++.++-+-+--.+ |...... ..++|
T Consensus 25 ~k~~ia~~L~~aGv~~IEvg----~~~~p~~~f~~~~~~~~~e~l~~i~~~~~~~~~~L~r~~~~~~~dv~~~~~a~~~G 100 (320)
T 3dxi_A 25 IVDAYILAMNELPIDYLEVG----YRNKPSKEYMGKFGYTPVSVLKHLRNISTKKIAIMLNEKNTTPEDLNHLLLPIIGL 100 (320)
T ss_dssp HHHHHHHHHHTTTCCEEEEE----ECCSCCSSCCCHHHHCCHHHHHHHHHHCCSEEEEEEEGGGCCGGGHHHHHGGGTTT
T ss_pred HHHHHHHHHHHhCCCEEEEe----cccCCccccccccccChHHHHHHHhhccCCeEEEEecCCCCChhhHHHHHHhhhcC
Confidence 44466678889999999984 333 21111 256777777666666555221111 2222222 24579
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC---CCCCHH-HHHHhh---ccCCEEEEEeecCCCCCCccchhHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN---PATSLS-AIECVL---DVVDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~---p~t~ie-~~~~~l---~~vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
+|.+.+.......+...+.++.+|+.|+++...+. |.++.+ .+.... ..+|.|.+- ...|-.......+
T Consensus 101 vd~~ri~~~~~nle~~~~~v~~ak~~G~~v~~~~~~~~~~~~~~~~l~~~~~~~~G~~~i~l~----Dt~G~~~P~~~~~ 176 (320)
T 3dxi_A 101 VDMIRIAIDPQNIDRAIVLAKAIKTMGFEVGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCMV----DSFGGITPKEVKN 176 (320)
T ss_dssp CSEEEEEECGGGHHHHHHHHHHHHTTTCEEEEEECCTTTGGGSTTSGGGGGGGTTTCSEEEEE----CTTSCCCHHHHHH
T ss_pred CCEEEEEecHHHHHHHHHHHHHHHHCCCEEEEEEEeCCCCCCHHHHHHHHHHhhCCCCEEEEC----cccCCCCHHHHHH
Confidence 99988775421124456677779999999988773 332221 122221 136766552 3344333334455
Q ss_pred HHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc-cc---ccCCCCHHHHHHHHHH
Q 023494 212 KISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG-SA---VFGAKDYAEAIKGIKT 272 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG-Sa---If~a~dp~~~~~~l~~ 272 (281)
.++.+++.+ +.+|.+ |-|....|.-..+++|||.+=.- +. -.++.+.++.+..|+.
T Consensus 177 lv~~l~~~~-----~~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si~GlG~~~GN~~~E~lv~~L~~ 240 (320)
T 3dxi_A 177 LLKEVRKYT-----HVPVGFHGHDNLQLGLINSITAIDDGIDFIDATITGMGRGAGNLKMELLLTYLNK 240 (320)
T ss_dssp HHHHHHHHC-----CSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBGGGCSSTTCBCBHHHHHHHHHH
T ss_pred HHHHHHHhC-----CCeEEEEeCCCCccHHHHHHHHHHhCCCEEEEeccccCCcccchhHHHHHHHHHh
Confidence 666666654 357777 58888889999999999976322 11 1233455555555554
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0029 Score=59.41 Aligned_cols=118 Identities=22% Similarity=0.282 Sum_probs=79.2
Q ss_pred HHHcCCCEEEEccccc--------cc----------------ccHHHHHHHHHHc-CC-cEEEEECCCC---------CH
Q 023494 134 FIKAGADIVSVHCEQS--------ST----------------IHLHRTLNQIKDL-GA-KAGVVLNPAT---------SL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~~----------------~~i~~~l~~ik~~-G~-k~Glai~p~t---------~i 178 (281)
+.++|.|.|-+|.-.. +. .-+.++++++|+. |. .+++=+++.. +.
T Consensus 170 A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~ 249 (361)
T 3gka_A 170 ARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSDPA 249 (361)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSCHH
T ss_pred HHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCCcH
Confidence 4578999999997530 00 0145788888865 43 7888888852 23
Q ss_pred HHHHHhh---c--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEE
Q 023494 179 SAIECVL---D--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALV 252 (281)
Q Consensus 179 e~~~~~l---~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~V 252 (281)
+...+++ + .+|+|-+.. |..+. . .++++|+.. +.++.+-||++++.+.++++.| +|.+.
T Consensus 250 ~~~~~la~~l~~~Gvd~i~v~~---~~~~~----~---~~~~ik~~~-----~iPvi~~Ggit~e~a~~~l~~G~aD~V~ 314 (361)
T 3gka_A 250 ATFGHVARELGRRRIAFLFARE---SFGGD----A---IGQQLKAAF-----GGPFIVNENFTLDSAQAALDAGQADAVA 314 (361)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC---CCSTT----C---CHHHHHHHH-----CSCEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHHcCCCEEEECC---CCCCH----H---HHHHHHHHc-----CCCEEEeCCCCHHHHHHHHHcCCccEEE
Confidence 3333332 2 389987643 22222 2 234555544 2578889999999999999998 99999
Q ss_pred EcccccCCCCHHHH
Q 023494 253 AGSAVFGAKDYAEA 266 (281)
Q Consensus 253 vGSaIf~a~dp~~~ 266 (281)
+|++++..+|....
T Consensus 315 iGR~~ladPdl~~k 328 (361)
T 3gka_A 315 WGKLFIANPDLPRR 328 (361)
T ss_dssp ESHHHHHCTTHHHH
T ss_pred ECHHhHhCcHHHHH
Confidence 99999987775433
|
| >1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0064 Score=59.93 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=108.9
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCccccc----ccCCHHHHHHcCcC-CCCCeeEEEEecC-------h----hhHHHHHH
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPN----ITIGPLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVPDFI 135 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn----~~~G~~~I~~ir~~-t~~~idaHLmv~d-------p----~~~i~~~~ 135 (281)
..+.++.|.+.|+++|++.-- +.|... -.-..+.++.|++. ++..+.+.+-..| | ..+++.+.
T Consensus 49 Kl~Ia~~L~~~Gv~~IE~G~p-atF~~~~rfl~~d~~e~lr~l~~~~~~~~l~~L~R~~N~~G~~~ypddv~~~~ve~a~ 127 (539)
T 1rqb_A 49 MVGACADIDAAGYWSVECWGG-ATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSA 127 (539)
T ss_dssp TGGGHHHHHHTTCSEEEEEET-THHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEeCcc-cccccchhccCCCHHHHHHHHHHhCCCCEEEEEeccccccCcccCcccccHHHHHHHH
Confidence 334456777789999988410 012221 11234567777663 5666665332111 1 24578889
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE----CCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCccc
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL----NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai----~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~ 206 (281)
++|+|.|.+-.-......+...++.+|+.|+++...+ .+.++.+.+.++++ .+|.|.+- -..|-...
T Consensus 128 ~aGvd~vrIf~s~sd~~ni~~~i~~ak~~G~~v~~~i~~~~~~~~~~e~~~~~a~~l~~~Gad~I~L~----DT~G~~~P 203 (539)
T 1rqb_A 128 ENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALK----DMAALLKP 203 (539)
T ss_dssp HTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEE----ETTCCCCH
T ss_pred hCCCCEEEEEEehhHHHHHHHHHHHHHHCCCeEEEEEEeeeCCCCCHHHHHHHHHHHHHcCCCEEEeC----CCCCCcCH
Confidence 9999999987654335678899999999999986555 33345555555543 27877653 12233233
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
..+.+.++.+++.+++ +.+|.+ |.|....|.-..+++|||.|
T Consensus 204 ~~v~~lv~~l~~~~p~---~i~I~~H~Hnd~GlAvAN~laAveAGa~~V 249 (539)
T 1rqb_A 204 QPAYDIIKAIKDTYGQ---KTQINLHCHSTTGVTEVSLMKAIEAGVDVV 249 (539)
T ss_dssp HHHHHHHHHHHHHHCT---TCCEEEEEBCTTSCHHHHHHHHHHTTCSEE
T ss_pred HHHHHHHHHHHHhcCC---CceEEEEeCCCCChHHHHHHHHHHhCCCEE
Confidence 3445667777776641 356766 89999999999999999976
|
| >1pii_A N-(5'phosphoribosyl)anthranilate isomerase; bifunctional(isomerase and synthase); 2.00A {Escherichia coli} SCOP: c.1.2.4 c.1.2.4 PDB: 1jcm_P* 2kzh_A | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0063 Score=58.74 Aligned_cols=164 Identities=20% Similarity=0.147 Sum_probs=104.3
Q ss_pred HHHHHHcCCCeEEEEeeeCccccc-c-cCCHHHHHHcCcCCCCCeeEEEEecChhhH-HHHHHHcCCCEEEEcccccccc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPN-I-TIGPLVVDALRPVTDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn-~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~-i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
++.+.++|+|++=+ .|.|. - ...++..++|.+.+.. --|=+.++.+... .+.+.+.+.|.|-+|++.
T Consensus 268 a~~a~~~Gad~iGf-----If~~~SpR~V~~~~a~~i~~~~~v-~~VgVFvn~~~~~i~~~~~~~~ld~vQLHG~E---- 337 (452)
T 1pii_A 268 AKAAYDAGAIYGGL-----IFVATSPRCVNVEQAQEVMAAAPL-QYVGVFRNHDIADVVDKAKVLSLAAVQLHGNE---- 337 (452)
T ss_dssp HHHHHHHTCSEEEE-----ECCTTCTTBCCHHHHHHHHHHCCC-EEEEEESSCCHHHHHHHHHHHTCSEEEECSCC----
T ss_pred HHHHHhcCCCEEEe-----ecCCCCCCCCCHHHHHHHHhcCCC-CEEEEEeCCCHHHHHHHHHhcCCCEEEECCCC----
Confidence 45566789999744 23332 1 3367777777554433 3344567655545 455677899999999863
Q ss_pred cHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 153 HLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 153 ~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
++ +.++.+++. ++++.-++.....++. ..|. .+|++++=+ ..|-+|+.|.-+.+.. . ...++
T Consensus 338 ~~-~~~~~l~~~~p~~~~iika~~v~~~~~~-~~~~-~~d~~LlD~-~~GGtG~~fdW~~l~~------~-----~~~p~ 402 (452)
T 1pii_A 338 EQ-LYIDTLREALPAHVAIWKALSVGETLPA-REFQ-HVDKYVLDN-GQGGSGQRFDWSLLNG------Q-----SLGNV 402 (452)
T ss_dssp CH-HHHHHHHHHSCTTSEEEEEEECSSSCCC-CCCT-TCCEEEEES-CSCCSSCCCCGGGGTT------S-----CCTTE
T ss_pred CH-HHHHHHHhhccCCCcEEEEEecCCccch-hhhh-cccEEEecC-CCCCCCCccCHHHhhc------c-----cCCcE
Confidence 22 344555553 6777777776654432 2222 478988744 4466788886544321 0 12467
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccC---CCCHH
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFG---AKDYA 264 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~---a~dp~ 264 (281)
.+.||+|++|+.+.++.++..+=+-|.+=. ..|+.
T Consensus 403 iLAGGL~p~NV~~ai~~~p~gvDvsSGVE~~pG~KD~~ 440 (452)
T 1pii_A 403 LLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDAR 440 (452)
T ss_dssp EEESSCCTTTHHHHHTTCCSEEEECGGGEEETTEECHH
T ss_pred EEEcCCCHHHHHHHHhcCCCEEEeCCceeCCCCCCCHH
Confidence 799999999999888899998888888742 24665
|
| >2btm_A TIM, protein (triosephosphate isomerase); thermophilic triose-phosphate, glycolysis; 2.40A {Geobacillus stearothermophilus} SCOP: c.1.1.1 PDB: 1btm_A | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0042 Score=55.52 Aligned_cols=129 Identities=16% Similarity=0.222 Sum_probs=84.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+.- .++ .+...+..+
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 154 (252)
T 2btm_A 79 PVMLKDLGVTYVILGHSERRQMFAE--TDETVNKKVLAAFTRGLIPIICCGE--SLEEREAGQTNAVVASQVEKALAGLT 154 (252)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEeCchhcccccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 568899999999885 34 2455666688889999999887752 322 123333333
Q ss_pred -C-----EEEEEeecC----CCCCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEE
Q 023494 189 -D-----LVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANAL 251 (281)
Q Consensus 189 -D-----~IlvmsV~p----G~~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~ 251 (281)
+ +|.+ +| |. |..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++. +.++|.+
T Consensus 155 ~~~~~~~vIAY---EPvWAIGT-G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~ 230 (252)
T 2btm_A 155 PEQVKQAVIAY---EPIWAIGT-GKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGA 230 (252)
T ss_dssp HHHHTTCEEEE---CCGGGTTT-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCTTTHHHHHTSTTCCEE
T ss_pred HHHcCCEEEEE---CCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcCccccCceeEEEcCCCCHHHHHHHHcCCCCCee
Confidence 2 3433 55 43 444334333 2233444443221 125788899999999999988 8999999
Q ss_pred EEcccccCCCCHHHHH
Q 023494 252 VAGSAVFGAKDYAEAI 267 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~ 267 (281)
-+|++..+++|+.+.+
T Consensus 231 LVGgAsL~a~~F~~Ii 246 (252)
T 2btm_A 231 LVGGASLEPASFLQLV 246 (252)
T ss_dssp EESGGGSSHHHHHHHH
T ss_pred EecHHHhChHHHHHHH
Confidence 9999999877666544
|
| >4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.003 Score=59.28 Aligned_cols=118 Identities=19% Similarity=0.192 Sum_probs=78.9
Q ss_pred HHHcCCCEEEEccccc--------cc----------------ccHHHHHHHHHHc-CC-cEEEEECCCC---------CH
Q 023494 134 FIKAGADIVSVHCEQS--------ST----------------IHLHRTLNQIKDL-GA-KAGVVLNPAT---------SL 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~~----------------~~i~~~l~~ik~~-G~-k~Glai~p~t---------~i 178 (281)
+.++|.|.|-+|.-.. +. .-+.++++++|+. |. .+++=+++.. +.
T Consensus 162 a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~~~ 241 (362)
T 4ab4_A 162 AKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDADRA 241 (362)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTTHH
T ss_pred HHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCCcH
Confidence 4578999999997630 00 0145778888764 43 7899888763 23
Q ss_pred HHHHHhh---c--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEE
Q 023494 179 SAIECVL---D--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALV 252 (281)
Q Consensus 179 e~~~~~l---~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~V 252 (281)
+...+++ . .+|+|-+.. |..|.. -++++|+.. +.++.+-||++++.+.++++.| +|.+.
T Consensus 242 ~~~~~la~~l~~~Gvd~i~v~~---~~~~~~-------~~~~ik~~~-----~iPvi~~Ggit~e~a~~~l~~g~aD~V~ 306 (362)
T 4ab4_A 242 ETFTYVARELGKRGIAFICSRE---READDS-------IGPLIKEAF-----GGPYIVNERFDKASANAALASGKADAVA 306 (362)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEC---CCCTTC-------CHHHHHHHH-----CSCEEEESSCCHHHHHHHHHTTSCSEEE
T ss_pred HHHHHHHHHHHHhCCCEEEECC---CCCCHH-------HHHHHHHHC-----CCCEEEeCCCCHHHHHHHHHcCCccEEE
Confidence 3333332 2 389987643 222321 234455544 2578889999999999999998 99999
Q ss_pred EcccccCCCCHHHH
Q 023494 253 AGSAVFGAKDYAEA 266 (281)
Q Consensus 253 vGSaIf~a~dp~~~ 266 (281)
+|++++..+|.-..
T Consensus 307 iGR~~lanPdl~~k 320 (362)
T 4ab4_A 307 FGVPFIANPDLPAR 320 (362)
T ss_dssp ESHHHHHCTTHHHH
T ss_pred ECHHhHhCcHHHHH
Confidence 99999987775433
|
| >2j27_A Triosephosphate isomerase glycosomal; TIM, 2PG, LOOP7, glycosome, TIM-barrel, gluconeogenesis, lipid synthesis, atomic resolution; 1.15A {Trypanosoma brucei brucei} PDB: 2j24_A 1kv5_A 1tpe_A 1tsi_A* 3tim_A 2v2c_A 2v0t_A 1tri_A 1tti_A 1mss_A 1ttj_A* 2wsq_A 2y70_A 2y6z_A* 1ml1_A 2wsr_A 3q37_A 2v2h_A 2v2d_A 1dkw_A ... | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0096 Score=53.15 Aligned_cols=132 Identities=17% Similarity=0.220 Sum_probs=86.1
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+.+.+=+. ..++. ++..+..+
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~ 155 (250)
T 2j27_A 80 LPILKDFGVNWIVLGHSERRAYYGE--TNEIVADKVAAAVASGFMVIACIG--ETLQERESGRTAVVVLTQIAAIAKKLK 155 (250)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHcCCCEEEECchhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEeC--CCHHHhhcccHHHHHHHHHHHHHhcCC
Confidence 678999999999985 44 345677788889999999888775 23321 12222222
Q ss_pred ------CEEEEEeecC-CCCCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEc
Q 023494 189 ------DLVLIMSVNP-GFGGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAG 254 (281)
Q Consensus 189 ------D~IlvmsV~p-G~~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvG 254 (281)
.+|.+=+|.. | +|..-.|+..+ -.+.+|+.+.+. ..+++|.-.|+|+++|+.++. +.++|.+-+|
T Consensus 156 ~~~~~~~vIAYEPvWAIG-TG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG 234 (250)
T 2j27_A 156 KADWAKVVIAYEAVWAIG-TGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVG 234 (250)
T ss_dssp GGGGGGEEEEEECGGGTT-SSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEES
T ss_pred HHHhCCEEEEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeeee
Confidence 1333322321 4 35444444433 234445443321 113678889999999999988 8999999999
Q ss_pred ccccCCCCHHHHHH
Q 023494 255 SAVFGAKDYAEAIK 268 (281)
Q Consensus 255 SaIf~a~dp~~~~~ 268 (281)
++..+ +|+.+.++
T Consensus 235 gAsL~-~~F~~ii~ 247 (250)
T 2j27_A 235 GASLK-PEFVDIIK 247 (250)
T ss_dssp GGGGS-TTHHHHHH
T ss_pred hHHHH-HHHHHHHH
Confidence 99999 88876653
|
| >1p4c_A L(+)-mandelate dehydrogenase; TIM barrel, hydroxy acid oxidizing enzyme, oxidoreductase; HET: FMN MES; 1.35A {Pseudomonas putida} SCOP: c.1.4.1 PDB: 1huv_A* 1p5b_A* 3giy_A* 2a7p_A* 2a85_A* 2a7n_A* | Back alignment and structure |
|---|
Probab=97.12 E-value=0.0016 Score=61.41 Aligned_cols=45 Identities=18% Similarity=0.214 Sum_probs=35.0
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
++-+.++++.++ .+|.++|||+ .+++.+++.+|||.+.+|++++.
T Consensus 267 ~~~l~~v~~~~~-----~pVia~GGI~~~~dv~kal~~GAdaV~iGr~~l~ 312 (380)
T 1p4c_A 267 MEVLAQSVAKTG-----KPVLIDSGFRRGSDIVKALALGAEAVLLGRATLY 312 (380)
T ss_dssp GGTHHHHHHHHC-----SCEEECSSCCSHHHHHHHHHTTCSCEEESHHHHH
T ss_pred HHHHHHHHHHcC-----CeEEEECCCCCHHHHHHHHHhCCcHhhehHHHHH
Confidence 444555555442 3788999997 77999999999999999999764
|
| >4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00036 Score=61.86 Aligned_cols=81 Identities=12% Similarity=0.147 Sum_probs=57.8
Q ss_pred CCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 174 PATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 174 p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
...|++..+.|.+ .+|.+.+.-......|..... +-|+++.+.. ..+++|+|||+ .++++.++++|||-+
T Consensus 30 ~~dP~~~a~~~~~~gad~lhvvDld~a~~~~~~~~---~~i~~i~~~~-----~~pl~vGGGIrs~e~~~~~l~~GadkV 101 (243)
T 4gj1_A 30 KYNPLKKFKEYEKAGAKELHLVDLTGAKDPSKRQF---ALIEKLAKEV-----SVNLQVGGGIRSKEEVKALLDCGVKRV 101 (243)
T ss_dssp CCCHHHHHHHHHHHTCCEEEEEEHHHHHCGGGCCH---HHHHHHHHHC-----CSEEEEESSCCCHHHHHHHHHTTCSEE
T ss_pred CCCHHHHHHHHHHCCCCEEEEEecCcccccchhHH---HHHHHHHHhc-----CCCeEeccccccHHHHHHHHHcCCCEE
Confidence 3467777777655 488887776665444443333 3344444432 47899999998 799999999999999
Q ss_pred EEcccccCCCC
Q 023494 252 VAGSAVFGAKD 262 (281)
Q Consensus 252 VvGSaIf~a~d 262 (281)
++||+.++.++
T Consensus 102 ii~t~a~~~p~ 112 (243)
T 4gj1_A 102 VIGSMAIKDAT 112 (243)
T ss_dssp EECTTTTTCHH
T ss_pred EEccccccCCc
Confidence 99999996443
|
| >3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0047 Score=57.51 Aligned_cols=128 Identities=16% Similarity=0.221 Sum_probs=83.7
Q ss_pred HHHcCCCEEEEccc---------cc-----------c----cccHHHHHHHHHHc---CCcEEEEECCC------CCHHH
Q 023494 134 FIKAGADIVSVHCE---------QS-----------S----TIHLHRTLNQIKDL---GAKAGVVLNPA------TSLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~E---------a~-----------~----~~~i~~~l~~ik~~---G~k~Glai~p~------t~ie~ 180 (281)
+.++|.|.|-+|+. +. + ..-+.++++++|+. +..+++=++|. .+.+.
T Consensus 152 a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~ 231 (343)
T 3kru_A 152 ANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDM 231 (343)
T ss_dssp HHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHH
T ss_pred ccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHH
Confidence 45789999999942 10 0 01146788888876 45789888874 23444
Q ss_pred HHHhhc----cCCEEEEEeecCCCCCCc---cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEE
Q 023494 181 IECVLD----VVDLVLIMSVNPGFGGQS---FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANAL 251 (281)
Q Consensus 181 ~~~~l~----~vD~IlvmsV~pG~~GQ~---f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~ 251 (281)
..++++ .+|+|-+. +.+...++ .....++-++++|+.. +++|.+.|||+ ++.+.++++.| +|.+
T Consensus 232 ~~~~a~~l~~~vd~i~vs--~g~~~~~~~~~~~~~~~~~~~~ir~~~-----~iPVi~~Ggi~t~e~Ae~~l~~G~aD~V 304 (343)
T 3kru_A 232 MVEYINMIKDKVDLIDVS--SGGLLNVDINLYPGYQVKYAETIKKRC-----NIKTSAVGLITTQELAEEILSNERADLV 304 (343)
T ss_dssp HHHHHHHHTTTCSEEEEE--CCCSSCCCCCCCTTTTHHHHHHHHHHH-----TCEEEEESSCCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHHHhhccccEEecc--CCceEeeeecccCceeehHHHHHHHhc-----CcccceeeeeeHHHHHHHHHhchhhHHH
Confidence 333322 27888763 22222221 1112345566666654 36899999996 89999999998 9999
Q ss_pred EEcccccCCCCHHHHHH
Q 023494 252 VAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~~ 268 (281)
.+|++++..+|.-..++
T Consensus 305 ~iGR~~lanPdl~~k~~ 321 (343)
T 3kru_A 305 ALGRELLRNPYWVLHTY 321 (343)
T ss_dssp EESHHHHHCTTHHHHTC
T ss_pred HHHHHHhcCCeEEEEEe
Confidence 99999998777655443
|
| >1o5x_A TIM, triosephosphate isomerase; 2- phosphoglycerate, META-phosphate, catalytic LOOP6; HET: 2PG; 1.10A {Plasmodium falciparum} SCOP: c.1.1.1 PDB: 1lzo_A 1m7o_A* 1m7p_A* 1lyx_A* 1ydv_A 2vfi_A* 3psw_A 3psv_A 3pwa_A 2vfh_A* 2vff_A 2vfg_A* 1vga_A 1woa_A* 1wob_A 3pvf_A 3py2_A 2vfd_A 2vfe_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.025 Score=50.34 Aligned_cols=132 Identities=19% Similarity=0.285 Sum_probs=86.8
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+. ...+. ++..+..+
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~ 155 (248)
T 1o5x_A 80 AEIAKDLNIEYVIIGHFERRKYFHE--TDEDVREKLQASLKNNLKAVVCFG--ESLEQREQNKTIEVITKQVKAFVDLID 155 (248)
T ss_dssp HHHHHHTTCCEEEECCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHTTCHHHHHHHHHHTTGGGCC
T ss_pred HHHHHHcCCCEEEeCChhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCChHHHHHHHHHHHHhhhh
Confidence 678899999999985 44 345677788889999999988775 23321 11123222
Q ss_pred --CEEEEEeecCCC---CCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHH-cCCcEEEEccc
Q 023494 189 --DLVLIMSVNPGF---GGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA 256 (281)
Q Consensus 189 --D~IlvmsV~pG~---~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSa 256 (281)
.-+ +..-+|=+ +|..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++.+ .++|.+-+|++
T Consensus 156 ~~~~~-vIAYEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA 234 (248)
T 1o5x_A 156 NFDNV-ILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNA 234 (248)
T ss_dssp CTTSE-EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGG
T ss_pred hhcCE-EEEECCHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCCCCHHHHHHHHcCCCCCeeEeeHH
Confidence 111 22446622 2444444443 3334445543321 0136788899999999999987 99999999999
Q ss_pred ccCCCCHHHHHH
Q 023494 257 VFGAKDYAEAIK 268 (281)
Q Consensus 257 If~a~dp~~~~~ 268 (281)
..+ +|+.+.++
T Consensus 235 sL~-~~F~~ii~ 245 (248)
T 1o5x_A 235 SLK-ESFVDIIK 245 (248)
T ss_dssp GGS-TTHHHHHH
T ss_pred HHH-HHHHHHHH
Confidence 999 98876654
|
| >1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A* | Back alignment and structure |
|---|
Probab=97.08 E-value=0.0057 Score=56.31 Aligned_cols=144 Identities=17% Similarity=0.131 Sum_probs=89.1
Q ss_pred cCcC-CCCCeeEEEEe-----cChhhHHHHHHHcCCCEEEEccccc------cccc---HHHHHHHHHHcCCcEEEE-EC
Q 023494 110 LRPV-TDLPLDVHLMI-----VEPEQRVPDFIKAGADIVSVHCEQS------STIH---LHRTLNQIKDLGAKAGVV-LN 173 (281)
Q Consensus 110 ir~~-t~~~idaHLmv-----~dp~~~i~~~~~aGAd~Itvh~Ea~------~~~~---i~~~l~~ik~~G~k~Gla-i~ 173 (281)
+|.. ++.|+..-+-. .+|....+.+..+|++.+.+|.... ...+ ..+.++++++.++.+.+- +.
T Consensus 111 l~~~~~d~pv~~~~~~~q~~~~~~~~~~~a~~~~~~~a~~i~~n~~~~~~~~~~~~~~~~~~~i~~vr~~~~Pv~vK~v~ 190 (332)
T 1vcf_A 111 VRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVG 190 (332)
T ss_dssp CTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSS
T ss_pred eeccCCCceeecccChhhhhccChHHHHHHHhhcCCCceeeccchHHHHhcCCCccHHHHHHHHHHHHcCCCCEEEEecC
Confidence 4443 45666544442 2344444444445888877775310 1112 357788888766677765 55
Q ss_pred CCCCHHHHHHhhc-cCCEEEEEeecCCC--------CC---------CccchhHHHHHHHHHHHhhhcCCCCeEEEecCC
Q 023494 174 PATSLSAIECVLD-VVDLVLIMSVNPGF--------GG---------QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235 (281)
Q Consensus 174 p~t~ie~~~~~l~-~vD~IlvmsV~pG~--------~G---------Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI 235 (281)
++...+..+.+.+ .+|.|.+ +.+.|. .. ..+-+.+++-|.++++..+ +++|.++|||
T Consensus 191 ~g~~~e~a~~~~~~G~d~I~v-s~~ggt~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~v~~~~~----~ipvia~GGI 265 (332)
T 1vcf_A 191 HGLSREAALALRDLPLAAVDV-AGAGGTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVLP----HLPLVASGGV 265 (332)
T ss_dssp SCCCHHHHHHHTTSCCSEEEC-CCBTSCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHCS----SSCEEEESSC
T ss_pred CCCCHHHHHHHHHcCCCEEEe-CCCCCCcchhHHHhhccccchhhhHhhccccHHHHHHHHHHhcC----CCeEEEECCC
Confidence 5566777666555 3899976 223231 11 1122345666666666542 4789999999
Q ss_pred C-hhcHHHHHHcCCcEEEEccccc
Q 023494 236 G-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 236 ~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
. .+.+.+++.+|||.+-+|++++
T Consensus 266 ~~~~d~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 266 YTGTDGAKALALGADLLAVARPLL 289 (332)
T ss_dssp CSHHHHHHHHHHTCSEEEECGGGH
T ss_pred CCHHHHHHHHHhCCChHhhhHHHH
Confidence 8 7889999999999999999876
|
| >3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.0036 Score=57.18 Aligned_cols=176 Identities=17% Similarity=0.171 Sum_probs=102.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+...+.++++.+.+.|++.+++ ..|. .|.+ ..=.++++.+++. +..+.+..-..+ .+.++.+.++|++.+.+.
T Consensus 85 s~eei~~~i~~~~~~g~~~i~~--~gGe-~p~~~~~~~~~li~~i~~~-~~~i~~s~g~l~-~e~l~~L~~ag~~~v~i~ 159 (348)
T 3iix_A 85 TPEEIVERARLAVQFGAKTIVL--QSGE-DPYXMPDVISDIVKEIKKM-GVAVTLSLGEWP-REYYEKWKEAGADRYLLR 159 (348)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEE--EESC-CGGGTTHHHHHHHHHHHTT-SCEEEEECCCCC-HHHHHHHHHHTCCEEECC
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--EeCC-CCCccHHHHHHHHHHHHhc-CceEEEecCCCC-HHHHHHHHHhCCCEEeee
Confidence 4456667777777788887654 6664 2433 2334566666654 322221111112 246788999999999988
Q ss_pred ccccc------------cccHHHHHHHHHHcCCcEEEEE--C-CCCCHHHHHHhhc-----cCCEEEEEeecC--CCCCC
Q 023494 146 CEQSS------------TIHLHRTLNQIKDLGAKAGVVL--N-PATSLSAIECVLD-----VVDLVLIMSVNP--GFGGQ 203 (281)
Q Consensus 146 ~Ea~~------------~~~i~~~l~~ik~~G~k~Glai--~-p~t~ie~~~~~l~-----~vD~IlvmsV~p--G~~GQ 203 (281)
.|+.+ .+...+.++.+++.|++++..+ . |+...+.+.+.+. .++.+.+....| |..-.
T Consensus 160 let~~~~~~~~i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l~~~~i~i~~~~p~~gt~l~ 239 (348)
T 3iix_A 160 HETANPVLHRKLRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLA 239 (348)
T ss_dssp CBCSCHHHHHHHSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHHTCSEECCEECCCCTTSTTT
T ss_pred eeeCCHHHHHHhCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhcCCCEEeeeeeecCCCCCcc
Confidence 77531 1235567778889999887643 3 3455555554433 267776655544 43211
Q ss_pred cc----chhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEE
Q 023494 204 SF----IESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALV 252 (281)
Q Consensus 204 ~f----~~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~V 252 (281)
.. ..+.++.+..+|.+++. ..|-+.++ ++++....++.+|||.+.
T Consensus 240 ~~~~~~~~e~~~~~a~~R~~lp~----~~i~~~~~~~~~~~~~~~~~l~~Gan~i~ 291 (348)
T 3iix_A 240 NEKKGDFTLTLKMVALTRILLPD----SNIPATTAMGTIVPGGREITLRCGANVIM 291 (348)
T ss_dssp TSCCCCHHHHHHHHHHHHHHSTT----SBCBCCHHHHHHSTTHHHHHHTTTCCEEC
T ss_pred cCCCCCHHHHHHHHHHHHHHCCC----CCchhcchhhhcCHHHHHHHHhcCCcEEe
Confidence 11 13334445555655543 23444444 556667788999999887
|
| >3tjx_A Dihydroorotate dehydrogenase; PYRD, dhodh, lmdhodh, oxidored mutation H174A; HET: FMN; 1.64A {Leishmania major} PDB: 3gz3_A* 3gye_A* 3tro_A* | Back alignment and structure |
|---|
Probab=97.07 E-value=0.028 Score=52.07 Aligned_cols=209 Identities=16% Similarity=0.226 Sum_probs=119.8
Q ss_pred EEEeccC-ccCHHHHHHHHHHcCCCeEEEEe-----eeCc-----------ccccc---cCCHH-HHHHc---CcCCCCC
Q 023494 62 PSILSAN-FAKLGEQVKAVELAGCDWIHVDV-----MDGR-----------FVPNI---TIGPL-VVDAL---RPVTDLP 117 (281)
Q Consensus 62 pSila~D-~~~l~~~l~~l~~~G~d~iHiDI-----mDG~-----------fvpn~---~~G~~-~I~~i---r~~t~~~ 117 (281)
|-++|+= +.+-.+.++.+...|.-.+.+-= -.|+ +.+.+ ..|.+ +++.+ ++..+.|
T Consensus 49 PvglAaG~~~~~~e~~~~l~~~G~G~v~~~tvt~~pq~GNp~PR~~~l~~~~iN~~G~~n~G~~~~~~~~~~~~~~~~~p 128 (354)
T 3tjx_A 49 PFMNAAGVMCTTTEELVAMTESASGSLVSKSCTPALREGNPTPRYQALPLGSINSMGLPNNGFDFYLAYAAEQHDYGKKP 128 (354)
T ss_dssp SEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBCCHHHHHHHHHHTCCTTTCC
T ss_pred CcEEccCCCCCCHHHHHHHHHcCCCEEEeCCcCcccccCCCCCeEEEcccccccccccCCHHHHHHHHHHHHhhccCCce
Confidence 5555543 45556788899888888776631 1111 01112 22433 23333 3335678
Q ss_pred eeEEEEecChhhHHHH---H---HHcCCCEEEEcccccc----------cccHHHHHHHHHHc-CCcEEEEECCCCCHHH
Q 023494 118 LDVHLMIVEPEQRVPD---F---IKAGADIVSVHCEQSS----------TIHLHRTLNQIKDL-GAKAGVVLNPATSLSA 180 (281)
Q Consensus 118 idaHLmv~dp~~~i~~---~---~~aGAd~Itvh~Ea~~----------~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~ 180 (281)
+.+-+.-.+++.+++. + ...++|++.+-.-+.. .+.+.++++..++. ...+.+-+.|......
T Consensus 129 vivsi~g~~~~~~~~~~~~~~~~~~~~ad~ielNiScPn~~g~~~l~~~~~~~~~i~~~v~~~~~~pv~vK~~p~~~~~~ 208 (354)
T 3tjx_A 129 LFLSMSGLSMRENVEMCKRLAAVATEKGVILELNLSCPNVPGKPQVAYDFDAMRQCLTAVSEVYPHSFGVKMPPYFDFAA 208 (354)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC---------CTTSHHHHHHHHHHHHHHCCSCEEEEECCCCSHHH
T ss_pred EEEEEecCChHHHHHHHHHHHHhhhcCCCEEEeeeCCCCCcchhhhccCHHHHHHHHHHHHHHhhcccccccCCCCCchh
Confidence 8888888888765443 2 2347999888654310 12245666666654 5567788888866533
Q ss_pred HHHh---h-cc--CCEEEE-------EeecC--------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 181 IECV---L-DV--VDLVLI-------MSVNP--------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 181 ~~~~---l-~~--vD~Ilv-------msV~p--------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
.... + +. .+.+.. |.++. |.+|.+..|..++.++++++... +++|...|
T Consensus 209 ~~~~~~~~~~~~~~~~i~~i~t~~~~~~id~~~~~~~~~~~~~~GGlSG~~~~~~a~~~v~~~~~~~~----~~pIIg~G 284 (354)
T 3tjx_A 209 FDAAAEILNEFPKVQFITCINSIGNGLVIDAETESVVIKPKQGFGGLGGRYVLPTALANINAFYRRCP----GKLIFGCG 284 (354)
T ss_dssp HHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCSGGGGEEEEEGGGGHHHHHHHHHHHHHHCT----TSEEEEES
T ss_pred HHHHHHHHHhhcccchhheecccccccccccccccccccCcccccccCchhhHHHHHHHHHHHHHhcC----CCcEEEeC
Confidence 2222 2 11 222221 11111 12345555666666766665543 46888899
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccc-ccCCCCH-HHHHHHHHHhc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSA-VFGAKDY-AEAIKGIKTSK 274 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSa-If~a~dp-~~~~~~l~~~~ 274 (281)
||. .+.+.+.+.+|||.+=+||+ +|..+.. .+..+.|.+.+
T Consensus 285 GI~s~~Da~e~i~aGAs~Vqv~Ta~~y~GP~~~~~I~~~L~~~L 328 (354)
T 3tjx_A 285 GVYTGEDAFLHVLAGASMVQVGTALQEEGPSIFERLTSELLGVM 328 (354)
T ss_dssp SCCSHHHHHHHHHHTEEEEEECHHHHHHCTTHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHcCCCEEEEChhhhhcCchHHHHHHHHHHHHH
Confidence 998 78898999999999999998 4654443 34445555443
|
| >1kbi_A Cytochrome B2, L-LCR; flavocytochrome B2, electron transfer, oxidoreductase; HET: HEM FMN; 2.30A {Saccharomyces cerevisiae} SCOP: c.1.4.1 d.120.1.1 PDB: 1fcb_A* 1lco_A* 1ldc_A* 1sze_A* 2oz0_A* 1szf_A* 1szg_A* 1ltd_A* 1kbj_A* 1qcw_A* 3ks0_A* | Back alignment and structure |
|---|
Probab=97.06 E-value=0.0075 Score=59.04 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhhhc--CCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 209 QVKKISDLRRMCLEK--GVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~--~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
.++-+.++++.+.++ +.+++|.+||||. .+.+.+++.+|||.+-+|+.++
T Consensus 384 ~~~~l~~v~~~v~~~~~~~~ipVia~GGI~~g~Dv~kaLalGAdaV~iGr~~l 436 (511)
T 1kbi_A 384 PIEVLAETMPILEQRNLKDKLEVFVDGGVRRGTDVLKALCLGAKGVGLGRPFL 436 (511)
T ss_dssp HHHHHHHHHHHHHTTTCBTTBEEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred hHHHHHHHHHHHHhhccCCCcEEEEECCCCCHHHHHHHHHcCCCEEEECHHHH
Confidence 355556666655321 1257899999999 7788899999999999999865
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.05 E-value=0.034 Score=49.94 Aligned_cols=194 Identities=13% Similarity=0.153 Sum_probs=129.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-+.-++...++++|+|-|=+ |--|.- -.-..-+..||+....++...+-. ..++++.+.+..++.||+-.
T Consensus 51 ~~PDpv~aA~~ae~aGAdGITv-----HlReDrRHI~d~Dv~~L~~~i~t~lNlEma~--t~emi~ial~~kP~~vtLVP 123 (278)
T 3gk0_A 51 AYPDPVRAALAAEDAGADAITL-----HLREDRRHIVDADVRTLRPRVKTRMNLECAV--TPEMLDIACEIRPHDACLVP 123 (278)
T ss_dssp SCSCHHHHHHHHHHTTCSEEEE-----ECCTTCSSSCHHHHHHHHHHCSSCEEEEECS--SHHHHHHHHHHCCSEEEECC
T ss_pred CCCCHHHHHHHHHHcCCCEEEe-----ccCCCcccCCHHHHHHHHHHcCCCEEeecCC--CHHHHHHHHHcCCCEEEECC
Confidence 4446667777888999998544 111221 234556777777655666654433 34588889999999999998
Q ss_pred ccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc----chh
Q 023494 147 EQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF----IES 208 (281)
Q Consensus 147 Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f----~~~ 208 (281)
|.. ..+.+..+++.+++.|+++.+.+.|+ .+.++.-.+ .+|+|-+.|- .....+ ...
T Consensus 124 EkreE~TTegGlDv~~~~~~L~~~i~~L~~~GIrVSLFIDpd--~~qI~aA~~~GAd~IELhTG---~YA~a~~~~~~~~ 198 (278)
T 3gk0_A 124 EKRSELTTEGGLDVVGHFDAVRAACKQLADAGVRVSLFIDPD--EAQIRAAHETGAPVIELHTG---RYADAHDAAEQQR 198 (278)
T ss_dssp CSGGGBCSSSSBCTTTTHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHHTCSEEEECCH---HHHTCSSHHHHHH
T ss_pred CCCCCcCCCcchhhhccHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEecc---hhhccCCchhHHH
Confidence 752 01237889999999999999999874 333443322 4899987543 211112 234
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCC---CCHHHHHHHHHHhcC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGA---KDYAEAIKGIKTSKR 275 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a---~dp~~~~~~l~~~~~ 275 (281)
-+++|.+..++-.+. ++.+....|+|.+|++.+.+. +..-+-+|-+|+.. --.+++++++++.++
T Consensus 199 el~rl~~aA~~A~~l--GL~VnAGHGL~y~Nv~~ia~ip~i~ElnIGHaiIa~Al~~Gl~~AVr~mk~lm~ 267 (278)
T 3gk0_A 199 EFERIATGVDAGIAL--GLKVNAGHGLHYTNVQAIAALPGIAELNIGHAIVAHAVFVGWDNAVREMKAIMV 267 (278)
T ss_dssp HHHHHHHHHHHHHHT--TCEEEECTTCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHc--CCEEecCCCCCHHHHHHHHhCCCCeEEecCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 567777776665554 577889999999999987542 34667888877642 245678888887665
|
| >3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0011 Score=61.24 Aligned_cols=88 Identities=15% Similarity=0.265 Sum_probs=62.5
Q ss_pred HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEE
Q 023494 154 LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIE 230 (281)
Q Consensus 154 i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~ 230 (281)
+.+.++.+|+.. .++.+.+. .++.+++.+. .+|+|++=. |.++ .++++.+.++. +++|+
T Consensus 218 i~~Av~~ar~~~p~~kIeVEVd---tldea~eAl~aGaD~I~LDn---------~~~~---~l~~av~~l~~---~v~ie 279 (320)
T 3paj_A 218 IRQAISTAKQLNPGKPVEVETE---TLAELEEAISAGADIIMLDN---------FSLE---MMREAVKINAG---RAALE 279 (320)
T ss_dssp HHHHHHHHHHHSTTSCEEEEES---SHHHHHHHHHTTCSEEEEES---------CCHH---HHHHHHHHHTT---SSEEE
T ss_pred HHHHHHHHHHhCCCCeEEEEEC---CHHHHHHHHHcCCCEEEECC---------CCHH---HHHHHHHHhCC---CCeEE
Confidence 567788888753 56666553 3455555544 589987721 3344 44555555542 58999
Q ss_pred EecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 231 VDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 231 VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.||||++|+.++.+.|+|++.+|+...+
T Consensus 280 aSGGIt~~~I~~~a~tGVD~isvGalt~s 308 (320)
T 3paj_A 280 NSGNITLDNLKECAETGVDYISVGALTKH 308 (320)
T ss_dssp EESSCCHHHHHHHHTTTCSEEECTHHHHS
T ss_pred EECCCCHHHHHHHHHcCCCEEEECceecC
Confidence 99999999999999999999999986544
|
| >1aw2_A Triosephosphate isomerase; psychrophilic, vibrio marinus; 2.65A {Moritella marina} SCOP: c.1.1.1 PDB: 1aw1_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0076 Score=54.00 Aligned_cols=132 Identities=20% Similarity=0.302 Sum_probs=86.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+.- ..+. ++..+..+
T Consensus 82 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 157 (256)
T 1aw2_A 82 PAMLKEFGATHIIIGHSERREYHAE--SDEFVAKKFAFLKENGLTPVLCIGE--SDAQNEAGETMAVCARQLDAVINTQG 157 (256)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEECchhhccccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 578899999999885 44 2455666688889999998887752 3322 12222211
Q ss_pred -C-----EEEEEeecCCC---CCCccchhHHH-HHHHHHHHhhhcC----CCCeEEEecCCChhcHHHHHHc-CCcEEEE
Q 023494 189 -D-----LVLIMSVNPGF---GGQSFIESQVK-KISDLRRMCLEKG----VNPWIEVDGGVGPKNAYKVIEA-GANALVA 253 (281)
Q Consensus 189 -D-----~IlvmsV~pG~---~GQ~f~~~~l~-kI~~lr~l~~~~~----~~~~I~VDGGI~~e~i~~~~~a-GAD~~Vv 253 (281)
+ +|. -+|=+ +|..-.|+..+ -.+.+|+.+.+.+ .+++|.-.|+|+++|+.++.+. ++|.+-+
T Consensus 158 ~~~~~~vvIA---YEPvWAIGTG~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 234 (256)
T 1aw2_A 158 VEALEGAIIA---YEPIWAIGTGKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALV 234 (256)
T ss_dssp GGGGTTCEEE---ECCTTTTTSSCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHTTSTTCCEEEE
T ss_pred HHHcCCEEEE---ECCHHHhCCCCCCCHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHHHHHHHHcCCCCCeeee
Confidence 2 343 36632 35554444433 3444555543211 1367888999999999999877 9999999
Q ss_pred cccccCCCCHHHHHHH
Q 023494 254 GSAVFGAKDYAEAIKG 269 (281)
Q Consensus 254 GSaIf~a~dp~~~~~~ 269 (281)
|++..+++|+.+.++.
T Consensus 235 GgAsL~a~~F~~Ii~~ 250 (256)
T 1aw2_A 235 GGAALDAKSFAAIAKA 250 (256)
T ss_dssp SGGGGCHHHHHHHHHH
T ss_pred cHHHhChHHHHHHHHH
Confidence 9999988777765543
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0052 Score=60.43 Aligned_cols=126 Identities=19% Similarity=0.201 Sum_probs=83.0
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEE-EEECCCCCHHHHHHhhc-cCCEEEEEeecCCC------
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG-VVLNPATSLSAIECVLD-VVDLVLIMSVNPGF------ 200 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~G-lai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~------ 200 (281)
+.++.+.++|+|.+.+-......+...+.++++|+.--.+- ++=|..|. +..+.+++ .+|.|-+ ++=||.
T Consensus 284 eR~~aLv~AGvD~iviD~ahGhs~~v~~~i~~ik~~~p~~~viaGNVaT~-e~a~~Li~aGAD~vkV-GiGpGSiCtTr~ 361 (556)
T 4af0_A 284 DRLKLLAEAGLDVVVLDSSQGNSVYQIEFIKWIKQTYPKIDVIAGNVVTR-EQAAQLIAAGADGLRI-GMGSGSICITQE 361 (556)
T ss_dssp HHHHHHHHTTCCEEEECCSCCCSHHHHHHHHHHHHHCTTSEEEEEEECSH-HHHHHHHHHTCSEEEE-CSSCSTTBCCTT
T ss_pred HHHHHHHhcCCcEEEEeccccccHHHHHHHHHHHhhCCcceEEeccccCH-HHHHHHHHcCCCEEee-cCCCCccccccc
Confidence 45778899999999986544333457788888888743333 34454444 44555555 5898876 444542
Q ss_pred -CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 201 -GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 201 -~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.|- -.|+ +.-|.+..+...+ ++++|..||||. ..++.+.+.+|||.+-+||.+-+.
T Consensus 362 v~Gv-G~PQ-~tAi~~~a~~a~~--~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt 419 (556)
T 4af0_A 362 VMAV-GRPQ-GTAVYAVAEFASR--FGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGT 419 (556)
T ss_dssp TCCS-CCCH-HHHHHHHHHHHGG--GTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ccCC-CCcH-HHHHHHHHHHHHH--cCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccc
Confidence 110 1232 2334444444433 357899999999 779999999999999999988753
|
| >2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.039 Score=51.88 Aligned_cols=167 Identities=19% Similarity=0.194 Sum_probs=101.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccc-ccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPN-ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn-~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+..+.++.|.+.|+++|++ | | |. ...-.+.++.+++. .+..+.+... .++. -++.+.++|++.|.+-.-.
T Consensus 26 ~k~~ia~~L~~~Gv~~IE~----g-~-p~~~~~~~~~~~~i~~~~~~~~v~~~~r-~~~~-di~~a~~~g~~~v~i~~~~ 97 (382)
T 2ztj_A 26 DKVEIAKALDEFGIEYIEV----T-T-PVASPQSRKDAEVLASLGLKAKVVTHIQ-CRLD-AAKVAVETGVQGIDLLFGT 97 (382)
T ss_dssp HHHHHHHHHHHHTCSEEEE----C-C-TTSCHHHHHHHHHHHTSCCSSEEEEEEE-SCHH-HHHHHHHTTCSEEEEEECC
T ss_pred HHHHHHHHHHHcCcCEEEE----c-C-CcCCHHHHHHHHHHHhcCCCcEEEEEcc-cChh-hHHHHHHcCCCEEEEEecc
Confidence 3345566777889999888 3 3 32 12223456666654 2233332211 2333 3788899999988875432
Q ss_pred cc-------------cccHHHHHHHHHHcC--CcEEEEECCC--CCHHHHHHhhc----cCCEEEEEeecCCCCCCccch
Q 023494 149 SS-------------TIHLHRTLNQIKDLG--AKAGVVLNPA--TSLSAIECVLD----VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~~-------------~~~i~~~l~~ik~~G--~k~Glai~p~--t~ie~~~~~l~----~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
.. .+.+.+.++.+|+.| .++.+..... ++.+.+.++++ .+|.|.+- -..|-....
T Consensus 98 s~~~~~~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~ed~~~~~~~~~~~~~~~~~~~a~~i~l~----DT~G~~~P~ 173 (382)
T 2ztj_A 98 SKYLRAPHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSAEDTFRSEEQDLLAVYEAVAPYVDRVGLA----DTVGVATPR 173 (382)
T ss_dssp --------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEETTTTTSCHHHHHHHHHHHGGGCSEEEEE----ETTSCCCHH
T ss_pred CHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHhcCEEEec----CCCCCCCHH
Confidence 11 134678889999999 8877765433 34444444432 25666542 223332333
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEE
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~V 252 (281)
++.+.++.+++.++ .+.+|.+ |.|.-..|.-..+++||+.+=
T Consensus 174 ~~~~lv~~l~~~~~---~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd 219 (382)
T 2ztj_A 174 QVYALVREVRRVVG---PRVDIEFHGHNDTGCAIANAYEAIEAGATHVD 219 (382)
T ss_dssp HHHHHHHHHHHHHT---TTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEE
T ss_pred HHHHHHHHHHHhcC---CCCeEEEEeCCCccHHHHHHHHHHHhCCCEEE
Confidence 44566777776531 2367777 799999999999999999774
|
| >1vkf_A Glycerol uptake operon antiterminator-related Pro; struc genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: CIT; 1.65A {Thermotoga maritima} SCOP: c.1.29.1 | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0027 Score=54.36 Aligned_cols=98 Identities=21% Similarity=0.175 Sum_probs=63.0
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHH
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
...++|+|+=- -...++.+|++|+.+-.- +-.+..++.-.+.++ ++|++-+| ||. ..|.++
T Consensus 80 ~~~~pdGIIsT--------k~~~i~~Akk~GL~tIqR~FliDs~al~~~~~~I~~~kPD~iEiL---Pg~----v~p~~I 144 (188)
T 1vkf_A 80 KKAGADGIITI--------KPKNYVVAKKNGIPAVLRFFALDSKAVERGIEQIETLGVDVVEVL---PGA----VAPKVA 144 (188)
T ss_dssp HHHTCSEEEES--------CHHHHHHHHHTTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEE---SGG----GHHHHH
T ss_pred HhcCCCEEEcC--------cHHHHHHHHHcCCEEeeEEEEEEeHHHhhhhhhccccCCCeEeec---CCC----chHHHH
Confidence 34467777522 224678888899877542 222223333334444 48999888 542 234444
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcc-cccC
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGS-AVFG 259 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGS-aIf~ 259 (281)
+++ .+.++-+.|+|+ .|.+.+ +++|||.++.|+ .+++
T Consensus 145 ~~v-----------~~~PiIaGGlI~t~edv~~-l~aGA~aIsTs~~~LW~ 183 (188)
T 1vkf_A 145 RKI-----------PGRTVIAAGLVETEEEARE-ILKHVSAISTSSRILWK 183 (188)
T ss_dssp TTS-----------TTSEEEEESCCCSHHHHHH-HTTTSSEEEECCHHHHT
T ss_pred HHh-----------cCCCEEEECCcCCHHHHHH-HHCCCeEEEeCCHHHhC
Confidence 333 146898999999 889999 999999999983 3543
|
| >1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0035 Score=62.78 Aligned_cols=130 Identities=9% Similarity=0.013 Sum_probs=79.5
Q ss_pred HHHHcCCCEEEEccccc--------c----------------cccHHHHHHHHHHc---CCcEEEEECC------CCCHH
Q 023494 133 DFIKAGADIVSVHCEQS--------S----------------TIHLHRTLNQIKDL---GAKAGVVLNP------ATSLS 179 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~----------------~~~i~~~l~~ik~~---G~k~Glai~p------~t~ie 179 (281)
.+.++|.|.|-+|.-.. + ..-+.++++++|+. +..+++=++| ..+.+
T Consensus 149 ~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~ 228 (671)
T 1ps9_A 149 LAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFA 228 (671)
T ss_dssp HHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHH
T ss_pred HHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHH
Confidence 34678999999996420 0 01146778888874 3445564554 23444
Q ss_pred HHHHhhc-----cCCEEEEEee--cCCCC-CCccch--hHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcC-
Q 023494 180 AIECVLD-----VVDLVLIMSV--NPGFG-GQSFIE--SQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAG- 247 (281)
Q Consensus 180 ~~~~~l~-----~vD~IlvmsV--~pG~~-GQ~f~~--~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aG- 247 (281)
...+++. .+|+|.+... ++.+. .+...+ ..++.++++|+. .++++...||| +++++.++++.|
T Consensus 229 ~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~iPvi~~Ggi~~~~~a~~~l~~g~ 303 (671)
T 1ps9_A 229 ETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGH-----VSLPLVTTNRINDPQVADDILSRGD 303 (671)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTS-----CSSCEEECSSCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHh-----cCceEEEeCCCCCHHHHHHHHHcCC
Confidence 4333322 3899976431 11111 011111 223444444433 35789999999 699999999998
Q ss_pred CcEEEEcccccCCCCHHHHH
Q 023494 248 ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 248 AD~~VvGSaIf~a~dp~~~~ 267 (281)
||.+.+||+++..+|+...+
T Consensus 304 aD~V~~gR~~l~~P~l~~k~ 323 (671)
T 1ps9_A 304 ADMVSMARPFLADAELLSKA 323 (671)
T ss_dssp CSEEEESTHHHHCTTHHHHH
T ss_pred CCEEEeCHHHHhCcHHHHHH
Confidence 99999999999877765443
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=96.87 E-value=0.056 Score=47.78 Aligned_cols=194 Identities=13% Similarity=0.152 Sum_probs=129.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+.-+....++++|+|-|-+ |--|.- -.-..-+..||+..+.++...+- -..++++.+.+..++.+|+-.|.-
T Consensus 26 dpv~aA~~ae~aGAdgITv-----HlReDrRHI~d~Dv~~L~~~~~~~lNlE~a--~t~emi~ia~~~kP~~vtLVPE~r 98 (243)
T 1m5w_A 26 DPVQAAFIAEQAGADGITV-----HLREDRRHITDRDVRILRQTLDTRMNLEMA--VTEEMLAIAVETKPHFCCLVPEKR 98 (243)
T ss_dssp CHHHHHHHHHTTTCSEEEE-----ECCTTCSSSCHHHHHHHHHHCSSEEEEEEC--SSHHHHHHHHHHCCSEEEECCCCS
T ss_pred CHHHHHHHHHHcCCCEEEe-----CCCCCcccCCHHHHHHHHHhcCCCEEeccC--CCHHHHHHHHHcCCCEEEECCCCC
Confidence 4556667788999998654 212221 23456678887765556665443 334588889999999999998831
Q ss_pred -------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecC-CCCCCccchhHHHHHH
Q 023494 150 -------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP-GFGGQSFIESQVKKIS 214 (281)
Q Consensus 150 -------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~p-G~~GQ~f~~~~l~kI~ 214 (281)
..+.+..+++.+++.|+++.+.+.|+ .+.++.-.. .+|+|-+.|-.= ...+..-...-+++|.
T Consensus 99 ~e~TTegGldv~~~~~~l~~~i~~L~~~GIrVSLFIDpd--~~qi~aA~~~GA~~IELhTG~Ya~a~~~~~~~~el~~i~ 176 (243)
T 1m5w_A 99 QEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD--EEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELARIA 176 (243)
T ss_dssp SCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHHHHH
T ss_pred CCcCCCcchhHHhhHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCcCEEEEechhhhcCCCchhHHHHHHHHH
Confidence 11237889999999999999999874 444444333 489998865421 1111111234567777
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccccCC---CCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAVFGA---KDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaIf~a---~dp~~~~~~l~~~~~ 275 (281)
...++..+. ++.+...-|+|.+|+..+.+. +..-+-+|.+|+.. --.++++++|++.++
T Consensus 177 ~aa~~A~~l--GL~VnAGHgL~y~Nv~~ia~ip~i~ElnIGHaiia~Al~~Gl~~aV~~m~~~~~ 239 (243)
T 1m5w_A 177 KAATFAASL--GLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLML 239 (243)
T ss_dssp HHHHHHHHT--TCEEEEESSCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc--CCEEecCCCCCHHHHHHHhhCCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 776666554 578889999999999998653 34667788777642 246678888887663
|
| >3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.0088 Score=56.37 Aligned_cols=123 Identities=16% Similarity=0.188 Sum_probs=79.5
Q ss_pred HH-HcCCCEEEEccccc----------------------ccc----cHHHHHHHHHHc-CC-cEEEEECCCC--------
Q 023494 134 FI-KAGADIVSVHCEQS----------------------STI----HLHRTLNQIKDL-GA-KAGVVLNPAT-------- 176 (281)
Q Consensus 134 ~~-~aGAd~Itvh~Ea~----------------------~~~----~i~~~l~~ik~~-G~-k~Glai~p~t-------- 176 (281)
+. ++|.|.|-+|.-.. +.+ -+.++++++|+. |- .+++=|+|..
T Consensus 183 a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~~~ 262 (379)
T 3aty_A 183 AIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMIDS 262 (379)
T ss_dssp HHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCCS
T ss_pred HHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCCCC
Confidence 46 89999999996420 000 145677778764 42 5888787743
Q ss_pred -CHHHHHHhh---c--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-Cc
Q 023494 177 -SLSAIECVL---D--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-AN 249 (281)
Q Consensus 177 -~ie~~~~~l---~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD 249 (281)
+.+...+++ . .+|+|-+.. +++..+.+ +. + ++++|+.. +.+|.+.|||+++.+.++++.| ||
T Consensus 263 ~~~~~~~~la~~l~~~Gvd~i~v~~--~~~~~~~~-~~--~-~~~ir~~~-----~iPvi~~G~it~~~a~~~l~~g~aD 331 (379)
T 3aty_A 263 NPEALTKHLCKKIEPLSLAYLHYLR--GDMVNQQI-GD--V-VAWVRGSY-----SGVKISNLRYDFEEADQQIREGKVD 331 (379)
T ss_dssp CHHHHHHHHHHHHGGGCCSEEEEEC--SCTTSCCC-CC--H-HHHHHTTC-----CSCEEEESSCCHHHHHHHHHTTSCS
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEcC--CCcCCCCc-cH--H-HHHHHHHC-----CCcEEEECCCCHHHHHHHHHcCCCe
Confidence 233333332 2 279887653 12222223 21 3 55555433 4689999999999999999998 99
Q ss_pred EEEEcccccCCCCHHHHH
Q 023494 250 ALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 250 ~~VvGSaIf~a~dp~~~~ 267 (281)
.+.+|++++..++.-..+
T Consensus 332 ~V~igR~~l~~P~l~~k~ 349 (379)
T 3aty_A 332 AVAFGAKFIANPDLVERA 349 (379)
T ss_dssp EEEESHHHHHCTTHHHHH
T ss_pred EEEecHHHHhCcHHHHHH
Confidence 999999988767654433
|
| >2yc6_A Triosephosphate isomerase; glycolysis; HET: PGA; 1.45A {Giardia intestinalis} PDB: 2dp3_A 2yc7_A* 3pf3_A 2yc8_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.028 Score=50.29 Aligned_cols=129 Identities=18% Similarity=0.242 Sum_probs=84.8
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+++.+=+.- .++. ++..+..+
T Consensus 81 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 156 (257)
T 2yc6_A 81 VEMLQDMGLKHVIVGHSERRRIMGE--TDEQSAKKAKRALEKGMTVIFCVGE--TLDERKANRTMEVNIAQLEALGKELG 156 (257)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCEEEECchhhccccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 678999999999986 34 3456777888899999999887742 3322 11222222
Q ss_pred --C------EEEEEeecC----CCCCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHHc-CCc
Q 023494 189 --D------LVLIMSVNP----GFGGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIEA-GAN 249 (281)
Q Consensus 189 --D------~IlvmsV~p----G~~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~a-GAD 249 (281)
+ +| .-+| | +|..-.|+..+. .+.+|+.+.+. ..+++|.-.|+|+++|+.++.+. ++|
T Consensus 157 ~~~~~~~~vvI---AYEPvWAIG-TG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diD 232 (257)
T 2yc6_A 157 ESKMLWKEVVI---AYEPVWSIG-TGVVATPEQAEEVHVGLRKWFVEKVAAEGAQHIRIIYGGSANGSNNEKLGQCPNID 232 (257)
T ss_dssp TCHHHHHTEEE---EECCGGGTT-TSCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEESSCCTTTHHHHHTSTTCC
T ss_pred ChhhccCCEEE---EECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCccCHHHHHHHHcCCCCC
Confidence 1 33 3366 4 344444444322 33444443210 12578889999999999999887 999
Q ss_pred EEEEcccccCCCCHHHHHH
Q 023494 250 ALVAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 250 ~~VvGSaIf~a~dp~~~~~ 268 (281)
.+-+|++..+++ ..+.++
T Consensus 233 G~LVGgAsL~a~-F~~Ii~ 250 (257)
T 2yc6_A 233 GFLVGGASLKPE-FMTMID 250 (257)
T ss_dssp EEEESGGGGSTH-HHHHHH
T ss_pred eeeecHHHHHHH-HHHHHH
Confidence 999999999876 655544
|
| >2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.014 Score=55.50 Aligned_cols=128 Identities=19% Similarity=0.305 Sum_probs=81.4
Q ss_pred HHHHcCCCEEEEccccc--------cc----------------ccHHHHHHHHHHc-C-CcEEEEECCCC---------C
Q 023494 133 DFIKAGADIVSVHCEQS--------ST----------------IHLHRTLNQIKDL-G-AKAGVVLNPAT---------S 177 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~~----------------~~i~~~l~~ik~~-G-~k~Glai~p~t---------~ 177 (281)
.+.++|.|.|-+|.-.. +. .-+.++++++|+. | ..+++=|+|.. +
T Consensus 179 ~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~~ 258 (402)
T 2hsa_B 179 NAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSNP 258 (402)
T ss_dssp HHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSCH
T ss_pred HHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCCC
Confidence 34678999999997420 00 0156788888874 4 37888888752 1
Q ss_pred HHHHHHhh----c-c------CCEEEEEeecCCCCC---Cc--cc--h-hHHHHHHHHHHHhhhcCCCCeEEEecCCChh
Q 023494 178 LSAIECVL----D-V------VDLVLIMSVNPGFGG---QS--FI--E-SQVKKISDLRRMCLEKGVNPWIEVDGGVGPK 238 (281)
Q Consensus 178 ie~~~~~l----~-~------vD~IlvmsV~pG~~G---Q~--f~--~-~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e 238 (281)
.+...+++ + . +|+|-+.. ++..+ .+ +. + ..++-++++|+.+ +.+|.+-|||+++
T Consensus 259 ~~~~~~la~~le~~G~~gg~~vd~i~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~-----~iPvi~~G~i~~~ 331 (402)
T 2hsa_B 259 LSLGLAVVERLNKIQLHSGSKLAYLHVTQ--PRYVAYGQTEAGRLGSEEEEARLMRTLRNAY-----QGTFICSGGYTRE 331 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSEEEEEC--CCCCTTTTSSSTTTTHHHHHHHHHHHHHHHC-----SSCEEEESSCCHH
T ss_pred HHHHHHHHHHHHhcCCccCCceEEEEEec--CccccccCCccccccCCcchHHHHHHHHHHC-----CCCEEEeCCCCHH
Confidence 22222222 2 3 78887643 12211 11 10 1 1234455555543 4688899999999
Q ss_pred cHHHHHHcC-CcEEEEcccccCCCCHHHHH
Q 023494 239 NAYKVIEAG-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 239 ~i~~~~~aG-AD~~VvGSaIf~a~dp~~~~ 267 (281)
.+.++++.| ||.+-+|++++..++.-..+
T Consensus 332 ~a~~~l~~g~aD~V~igR~~l~dP~l~~k~ 361 (402)
T 2hsa_B 332 LGIEAVAQGDADLVSYGRLFISNPDLVMRI 361 (402)
T ss_dssp HHHHHHHTTSCSEEEESHHHHHCTTHHHHH
T ss_pred HHHHHHHCCCCceeeecHHHHhCchHHHHH
Confidence 999999998 99999999998777655443
|
| >1mo0_A TIM, triosephosphate isomerase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; 1.70A {Caenorhabditis elegans} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.74 E-value=0.019 Score=51.92 Aligned_cols=132 Identities=17% Similarity=0.173 Sum_probs=85.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccCC
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVVD 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~vD 189 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+++.+=+.- ..+. ++..+..++
T Consensus 99 ~~mLkd~G~~~ViiGHSERR~~f~E--tde~V~~Kv~~Al~~GL~pI~CvGE--tleeReag~t~~vv~~Ql~~~l~~~~ 174 (275)
T 1mo0_A 99 PAMIKDLGLEWVILGHSERRHVFGE--SDALIAEKTVHALEAGIKVVFCIGE--KLEEREAGHTKDVNFRQLQAIVDKGV 174 (275)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHcCCCEEEeCchhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhCCChHHHHHHHHHHHHhhhh
Confidence 678999999999986 44 3456777888899999999887742 3321 122232111
Q ss_pred ---EEEEEeecC----CCCCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHH-HHcCCcEEEEcc
Q 023494 190 ---LVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGS 255 (281)
Q Consensus 190 ---~IlvmsV~p----G~~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGS 255 (281)
-+ +..-+| |. |..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++ .+.++|++-+|+
T Consensus 175 ~~~~v-vIAYEPvWAIGT-GktAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGg 252 (275)
T 1mo0_A 175 SWENI-VIAYEPVWAIGT-GKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGG 252 (275)
T ss_dssp CSTTE-EEEECCGGGTTT-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESG
T ss_pred hhcCE-EEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhhChhhcCcccEEEcCCCCHhhHHHHhcCCCCCeeEech
Confidence 11 123466 43 444444443 3334445444321 11367888999999999876 568999999999
Q ss_pred cccCCCCHHHHHH
Q 023494 256 AVFGAKDYAEAIK 268 (281)
Q Consensus 256 aIf~a~dp~~~~~ 268 (281)
+..+++|+.+.++
T Consensus 253 ASLka~~F~~Ii~ 265 (275)
T 1mo0_A 253 ASLKPDFVKIINA 265 (275)
T ss_dssp GGGSTHHHHHHHH
T ss_pred HHhChHHHHHHHH
Confidence 9999887776554
|
| >3sy1_A UPF0001 protein YGGS; engineered protein, structural genomics, PSI-biology, protei structure initiative; HET: MES; 1.47A {Escherichia coli} PDB: 1w8g_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.024 Score=50.15 Aligned_cols=176 Identities=13% Similarity=0.053 Sum_probs=92.7
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
+.++.+.++|++++=+ .++ ..+.+..+.+.....-++..|+.=.-+.+.++.+... +|++..- + +.+.
T Consensus 42 ~~i~~~~~~G~~~fge-----n~v---qEa~~kr~~~~~~~~~~i~w~~iG~lq~nk~~~~~~~-~~~i~sV-d--s~~~ 109 (245)
T 3sy1_A 42 SAIAEAIDAGQRQFSE-----HYV---QEGVDKIRHFQELGVTGLEWNFAGPLQSNKSRLVAEH-FDWCITI-D--RLRI 109 (245)
T ss_dssp HHHHHHHHTTCCEEEE-----SSH---HHHHHHHHHHHHHTCCSCEEEECSCCCGGGHHHHHHH-CSEEEEE-C--CHHH
T ss_pred HHHHHHHHcCCCEEEE-----ecH---HHHHHHHHhhhhccCCCeEEeecCCCChHHHHHHHHH-CCEEEec-C--CHHH
Confidence 4577888899997632 222 2233333333221001344555322222344444421 4654322 1 1233
Q ss_pred HHHHHHHHHHcCCcEEEE--ECCCC-------CHHHHHHhh------ccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 154 LHRTLNQIKDLGAKAGVV--LNPAT-------SLSAIECVL------DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Gla--i~p~t-------~ie~~~~~l------~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+.++-+.+.+.|..+-+. +|.+. +.+.+.+++ +.+.+..+|+..|-.....-....+++++++++
T Consensus 110 a~~l~~~a~~~~~~~~V~lqVntG~e~~R~G~~~ee~~~l~~~i~~~~~l~l~Glmt~~~~~~d~~~~~~~f~~l~~l~~ 189 (245)
T 3sy1_A 110 ATRLNDQRPAELPPLNVLIQINISDENSKSGIQLAELDELAAAVAELPRLRLRGLSAIPAPESEYVRQFEVARQMAVAFA 189 (245)
T ss_dssp HHHHHHHSCTTSCCEEEEEEBCCSCTTCCSSBCGGGHHHHHHHHTTCTTEEEEEEECCCCCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceEEEEEECCCCcCCcCCCHHHHHHHHHHHHcCCCCeEEEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence 444444455567666555 45431 112333322 235667788754322221122345778888887
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCH
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp 263 (281)
.+.+++..++ .+.+|.+.+ ....++.|++.+=+||+||...++
T Consensus 190 ~l~~~~~~~~-~LSmGmS~d-~~~Ai~~G~t~vRvGt~iFg~r~y 232 (245)
T 3sy1_A 190 GLKTRYPHID-TLALGQSDD-MEAAIAAGSTMVAIGTAIFGARDY 232 (245)
T ss_dssp HHHTTSTTCC-EEECCCSTT-HHHHHHHTCCEEEESHHHHCC---
T ss_pred HHHHhCCCCC-EEeccCcHh-HHHHHHcCCCEEECchHHhCCCCC
Confidence 7766554444 479999874 555688999999999999987554
|
| >3r89_A Orotidine 5'-phosphate decarboxylase; PSI-biology, midwest center for structural genomics, MCSG, O 5-phosphate decarboxylase, lyase; 1.84A {Anaerococcus prevotii} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.013 Score=53.30 Aligned_cols=164 Identities=10% Similarity=0.036 Sum_probs=95.7
Q ss_pred cCCHHHHHHcCcC------CCCCeeEEEEecChhh----HHHHHHH--cCCCEEEEcccccccccHHHHHHHHHHcCCcE
Q 023494 101 TIGPLVVDALRPV------TDLPLDVHLMIVEPEQ----RVPDFIK--AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA 168 (281)
Q Consensus 101 ~~G~~~I~~ir~~------t~~~idaHLmv~dp~~----~i~~~~~--aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~ 168 (281)
.+|++.++.|++. .++++.+|+|..|... |.+.+++ .|+|.+|+|.-.. .+.++.+++.+++.|..+
T Consensus 72 ~~G~~~v~~L~~~i~~~~~~g~~VflDlK~~DIpnTv~~~a~~~~~~~lg~D~vTvh~~~G-~~~l~~~~~~a~~~~kgv 150 (290)
T 3r89_A 72 SYGIEGMIAYRDTLSYLREKDLLSIGDVKRSDIAASAKMYAKAHFEGDFETDFITLNPYMG-MDSIEPYEEYIEKGDKGV 150 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHHHHSGGGCCSEEEECCTTC-GGGTGGGHHHHHTTSCEE
T ss_pred hcCHHHHHHHHHHHHHHHHCCCeEEEEecccCcHHHHHHHHHHHhccccCCCEEEEcccCC-HHHHHHHHHHHHhcCCeE
Confidence 7899988777541 4789999999999874 4555556 7999999997653 455677788888888766
Q ss_pred EEEECCCCCHH-------------------HHHHhhccC----CEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC
Q 023494 169 GVVLNPATSLS-------------------AIECVLDVV----DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV 225 (281)
Q Consensus 169 Glai~p~t~ie-------------------~~~~~l~~v----D~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~ 225 (281)
-+....+.|-. ...++.... .+=.++-|-+.. .| +.++++|+.+++
T Consensus 151 ~vL~~tSn~g~~d~q~~~~~~g~l~~~V~~~a~~~~~~~~g~~~~g~~GvVvgAT-----~p---~e~~~iR~~~~~--- 219 (290)
T 3r89_A 151 FVLLRTSNPGAKDFEVLPVDGEEFFYKVGDKMRELNEKYIGKSGFGPIGLVVGAT-----HS---EEVEKIRKRYDK--- 219 (290)
T ss_dssp EEEEECCSGGGGTTTTCEETTEETHHHHHHHHHHHHGGGCCTTSCEEEEEEECCC-----CH---HHHHHHHHHTTT---
T ss_pred EEEEeCCCCCHHHHhhcccCCCCHHHHHHHHHHHHhhhccCCCCCCceEEEECCC-----Ch---HHHHHHHHhCCC---
Confidence 66554443320 111111111 000111111111 12 345666776653
Q ss_pred CCeEEEecCCChh--cHHHHHHcC---C-cEEEEcccccCC--------CCH----HHHHHHHHHhcCcCc
Q 023494 226 NPWIEVDGGVGPK--NAYKVIEAG---A-NALVAGSAVFGA--------KDY----AEAIKGIKTSKRPQA 278 (281)
Q Consensus 226 ~~~I~VDGGI~~e--~i~~~~~aG---A-D~~VvGSaIf~a--------~dp----~~~~~~l~~~~~~~~ 278 (281)
..| +-.||.++ +...+.+.+ . -++.++++|..+ +|. +++++++++.+....
T Consensus 220 -~~i-L~PGiGaQGg~~~d~~~~~~~g~g~lvn~SR~Il~a~~~~~~~~~~~~~aar~~a~~~~~~~~~~~ 288 (290)
T 3r89_A 220 -MFF-LIPGFGAQKADSMNVYKLLEGLNGGVVNSSRAILKNWQNYEDGSEKVGYYARKKAIETYEEIKANE 288 (290)
T ss_dssp -EEE-EECCCCSSHHHHHHHHTTCBTTBSEEEEECHHHHTGGGGSTTGGGCHHHHHHHHHHHHHHHHHTTC
T ss_pred -CeE-EECCcCCCCCCHHHHHHHHhcCCcEEEECCHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHhhh
Confidence 235 45999976 555555443 2 267777888754 233 355566666665443
|
| >2vxn_A Triosephosphate isomerase; fatty acid biosynthesis, transition state analogue, glycolysis, pentose shunt, gluconeogenesis, TIM, glycosome; HET: PGH PGA; 0.82A {Leishmania mexicana} PDB: 1if2_A* 1qds_A 1n55_A* 2y61_A 2y62_A 2y63_A 1amk_A 1tpf_A 1iig_A 1ag1_O* 1iih_A 1tpd_A 1trd_A* 2v5l_A 4tim_A* 5tim_A 6tim_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.039 Score=49.21 Aligned_cols=131 Identities=18% Similarity=0.256 Sum_probs=85.1
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+.- .++. ++..+..+
T Consensus 81 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 156 (251)
T 2vxn_A 81 MPILKDIGVHWVILGHSERRTYYGE--TDEIVAQKVSEACKQGFMVIACIGE--TLQQREANQTAKVVLSQTSAIAAKLT 156 (251)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEECchhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 678999999999985 44 3456777888899999999887752 3221 22223322
Q ss_pred ----CEEEEEeecC----CCCCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHH-HHcCCcEEEE
Q 023494 189 ----DLVLIMSVNP----GFGGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVA 253 (281)
Q Consensus 189 ----D~IlvmsV~p----G~~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~-~~aGAD~~Vv 253 (281)
.-+ +..-+| |. |..-.|+..+ -.+.+|+.+.+. ..+++|.-.|+|+++|+.++ .+.++|.+-+
T Consensus 157 ~~~~~~~-vIAYEPvWAIGT-G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 234 (251)
T 2vxn_A 157 KDAWNQV-VLAYEPVWAIGT-GKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLV 234 (251)
T ss_dssp TGGGGGE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEE
T ss_pred HHHhCCE-EEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHhcCCCCCeeee
Confidence 111 224466 43 4444444432 333444443321 11367888999999999866 5689999999
Q ss_pred cccccCCCCHHHHHH
Q 023494 254 GSAVFGAKDYAEAIK 268 (281)
Q Consensus 254 GSaIf~a~dp~~~~~ 268 (281)
|++..+ +|+.+.++
T Consensus 235 GgAsL~-~~F~~Ii~ 248 (251)
T 2vxn_A 235 GGASLK-PEFRDIID 248 (251)
T ss_dssp SGGGGS-TTHHHHHH
T ss_pred cHHHHH-HHHHHHHH
Confidence 999999 88876554
|
| >1tre_A Triosephosphate isomerase; intramolecular oxidoreductase; 2.60A {Escherichia coli} SCOP: c.1.1.1 PDB: 1tmh_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.033 Score=49.80 Aligned_cols=131 Identities=19% Similarity=0.279 Sum_probs=85.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+=++.+.++|+.+.+=+.- ..+. ++..+..+
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 155 (255)
T 1tre_A 80 AAMLKDIGAQYIIIGHSERRTYHKE--SDELIAKKFAVLKEQGLTPVLCIGE--TEAENEAGKTEEVCARQIDAVLKTQG 155 (255)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCCEEEECccccccccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 678899999999985 44 2455666688889999999887752 3322 22222221
Q ss_pred -C-----EEEEEeecC----CCCCCccchhHHH-HHHHHHHHhhhc----CCCCeEEEecCCChhcHHHHHH-cCCcEEE
Q 023494 189 -D-----LVLIMSVNP----GFGGQSFIESQVK-KISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVIE-AGANALV 252 (281)
Q Consensus 189 -D-----~IlvmsV~p----G~~GQ~f~~~~l~-kI~~lr~l~~~~----~~~~~I~VDGGI~~e~i~~~~~-aGAD~~V 252 (281)
+ +|.+ +| |. |..-.|+..+ -.+.+|+.+.+. ..+++|.-.|+|+++|+.++.+ .++|.+-
T Consensus 156 ~~~~~~vvIAY---EPvWAIGT-G~~Atpe~a~evh~~IR~~l~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~L 231 (255)
T 1tre_A 156 AAAFEGAVIAY---EPVWAIGT-GKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGAL 231 (255)
T ss_dssp GGGGTTCEEEE---CCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEE
T ss_pred HHHcCcEEEEE---CCHHHhCC-CCCCCHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHHHHHHHHcCCCCCeeE
Confidence 2 3433 55 43 4443444332 233344443210 1136788899999999999987 9999999
Q ss_pred EcccccCCCCHHHHHHH
Q 023494 253 AGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 253 vGSaIf~a~dp~~~~~~ 269 (281)
+|++..+++|+.+.++.
T Consensus 232 VGgAsL~a~~F~~Ii~~ 248 (255)
T 1tre_A 232 VGGASLKADAFAVIVKA 248 (255)
T ss_dssp ESGGGGCHHHHHHHHHH
T ss_pred ecHHHhChHHHHHHHHH
Confidence 99999988877766654
|
| >3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A | Back alignment and structure |
|---|
Probab=96.63 E-value=0.039 Score=56.15 Aligned_cols=191 Identities=14% Similarity=0.128 Sum_probs=115.5
Q ss_pred CHHHHHHHHHHcCCCe--EEEEeeeC-cc---cccccCCH-HHHHHcCcC-CCCCeeEEEEec-------Ch----hhHH
Q 023494 71 KLGEQVKAVELAGCDW--IHVDVMDG-RF---VPNITIGP-LVVDALRPV-TDLPLDVHLMIV-------EP----EQRV 131 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~--iHiDImDG-~f---vpn~~~G~-~~I~~ir~~-t~~~idaHLmv~-------dp----~~~i 131 (281)
+..+..+.|.+.|+++ |++. =| +| .|.....+ +.++.+++. ++..+.+++... -| ..++
T Consensus 126 dkl~Ia~~Ld~~Gvg~~~IE~g--GGatfd~~~~f~~e~p~e~l~~l~~~~~~~~l~~l~R~~n~vgy~~~p~~~~~~~i 203 (718)
T 3bg3_A 126 DLKKIAPYVAHNFSKLFSMENW--GGATFDVAMRFLYECPWRRLQELRELIPNIPFQMLLRGANAVGYTNYPDNVVFKFC 203 (718)
T ss_dssp HHHHHHHHHHHHCTTCSEEEEE--ETTHHHHHHHTSCCCHHHHHHHHHHHCSSSCEEEEECGGGTTSSSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcEEEec--CCcchhhccccCCCCHHHHHHHHHHHcccchHHHHhcccccccccccCCcchHHHH
Confidence 4445556777776665 5552 11 11 12223344 557777664 556665544321 12 3568
Q ss_pred HHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC----------CCHHHHHHhhcc-----CCEEEEEee
Q 023494 132 PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA----------TSLSAIECVLDV-----VDLVLIMSV 196 (281)
Q Consensus 132 ~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~----------t~ie~~~~~l~~-----vD~IlvmsV 196 (281)
+.+.++|+|.+.+.......+.+...++++++.|..+-.+++-. ++.+.+.++++. +|.|.+-
T Consensus 204 ~~a~~~Gvd~irIf~s~n~l~~l~~~i~~ak~~G~~v~~~i~~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~-- 281 (718)
T 3bg3_A 204 EVAKENGMDVFRVFDSLNYLPNMLLGMEAAGSAGGVVEAAISYTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIK-- 281 (718)
T ss_dssp HHHHHHTCCEEEEECSSCCHHHHHHHHHHHHTTTSEEEEEEECCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEE--
T ss_pred HHHHhcCcCEEEEEecHHHHHHHHHHHHHHHHcCCeEEEEEEeeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEc--
Confidence 88999999998887653234567788899999998877655322 245555555432 6877652
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc----ccccCCCCHHHHHH
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG----SAVFGAKDYAEAIK 268 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG----SaIf~a~dp~~~~~ 268 (281)
-..|-....++.+.++.+++.++ +.+|.+ |-|....|.-..+++|||.+=.- +.-.++.+.++.+.
T Consensus 282 --DT~G~~~P~~v~~lV~~lk~~~p----~~~I~~H~Hnd~GlAvANslaAveAGa~~VD~ti~GlGertGN~~lE~vv~ 355 (718)
T 3bg3_A 282 --DMAGLLKPTACTMLVSSLRDRFP----DLPLHIHTHDTSGAGVAAMLACAQAGADVVDVAADSMSGMTSQPSMGALVA 355 (718)
T ss_dssp --CTTSCCCHHHHHHHHHHHHHHST----TCCEEEECCCTTSCHHHHHHHHHHTTCSEEEEBCGGGCSTTSCCBHHHHHH
T ss_pred --CcCCCcCHHHHHHHHHHHHHhCC----CCeEEEEECCCccHHHHHHHHHHHhCCCEEEecCcccccccCchhHHHHHH
Confidence 33343333445677788877663 356776 88999889999999999976322 12233445555554
Q ss_pred HHH
Q 023494 269 GIK 271 (281)
Q Consensus 269 ~l~ 271 (281)
.|+
T Consensus 356 ~L~ 358 (718)
T 3bg3_A 356 CTR 358 (718)
T ss_dssp HHT
T ss_pred HHH
Confidence 444
|
| >1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A* | Back alignment and structure |
|---|
Probab=96.62 E-value=0.0085 Score=56.36 Aligned_cols=127 Identities=13% Similarity=0.205 Sum_probs=79.2
Q ss_pred HHHHcCCCEEEEccccc--------cc-----c-----------cHHHHHHHHHHc-CC-cEEEEECCCC---------C
Q 023494 133 DFIKAGADIVSVHCEQS--------ST-----I-----------HLHRTLNQIKDL-GA-KAGVVLNPAT---------S 177 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~--------~~-----~-----------~i~~~l~~ik~~-G~-k~Glai~p~t---------~ 177 (281)
.+.++|.|.|-+|.-.. +. + -+.++++++|+. |. .+++=+++.. +
T Consensus 175 ~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~~ 254 (376)
T 1icp_A 175 NAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNP 254 (376)
T ss_dssp HHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCH
T ss_pred HHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCCC
Confidence 34678999999997420 00 0 156778888874 43 7899898752 2
Q ss_pred HHHHHHh---hc--cCCEEEEEeecCCCCC-CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcE
Q 023494 178 LSAIECV---LD--VVDLVLIMSVNPGFGG-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANA 250 (281)
Q Consensus 178 ie~~~~~---l~--~vD~IlvmsV~pG~~G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~ 250 (281)
.+...++ ++ .+|+|-+..- ++.. .+. ....+.++++|+.. +++|.+-|||+++.+.++++.| +|.
T Consensus 255 ~~~~~~la~~le~~Gvd~i~v~~~--~~~~~~~~-~~~~~~~~~vr~~~-----~iPvi~~G~i~~~~a~~~l~~g~aD~ 326 (376)
T 1icp_A 255 TALGLYMVESLNKYDLAYCHVVEP--RMKTAWEK-IECTESLVPMRKAY-----KGTFIVAGGYDREDGNRALIEDRADL 326 (376)
T ss_dssp HHHHHHHHHHHGGGCCSEEEEECC--SCCC-------CCCCSHHHHHHC-----CSCEEEESSCCHHHHHHHHHTTSCSE
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCC--cccCCCCc-cccHHHHHHHHHHc-----CCCEEEeCCCCHHHHHHHHHCCCCcE
Confidence 2222222 22 2888876421 1110 010 00112244455543 3688899999999999999998 999
Q ss_pred EEEcccccCCCCHHHHH
Q 023494 251 LVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 251 ~VvGSaIf~a~dp~~~~ 267 (281)
+-+|++++..++.-..+
T Consensus 327 V~~gR~~l~~P~l~~k~ 343 (376)
T 1icp_A 327 VAYGRLFISNPDLPKRF 343 (376)
T ss_dssp EEESHHHHHCTTHHHHH
T ss_pred EeecHHHHhCccHHHHH
Confidence 99999998777755443
|
| >3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0037 Score=54.81 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=51.1
Q ss_pred HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcc
Q 023494 178 LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 178 ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGS 255 (281)
.+.++.+.+. +|+|.+...+....++.. .++.++++++. .++++.+.|||+ ++.+..++++|||.+++|+
T Consensus 38 ~~~a~~~~~~G~~~i~v~d~~~~~~~~~~---~~~~i~~i~~~-----~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig~ 109 (247)
T 3tdn_A 38 RDWVVEVEKRGAGEILLTSIDRDGTKSGY---DTEMIRFVRPL-----TTLPIIASGGAGKMEHFLEAFLRGADKVSINT 109 (247)
T ss_dssp HHHHHHHHHTTCSEEEEEETTTTTCSSCC---CHHHHHHHGGG-----CCSCEEEESCCCSHHHHHHHHHTTCSEECCSH
T ss_pred HHHHHHHHHcCCCEEEEEecCcccCCCcc---cHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCCeeehhh
Confidence 3444444443 777776555443333322 23445544432 357899999999 7899999999999999999
Q ss_pred cccCCCC
Q 023494 256 AVFGAKD 262 (281)
Q Consensus 256 aIf~a~d 262 (281)
+.+..++
T Consensus 110 ~~l~dp~ 116 (247)
T 3tdn_A 110 AAVENPS 116 (247)
T ss_dssp HHHHCTH
T ss_pred HHhhChH
Confidence 9885443
|
| >1b9b_A TIM, protein (triosephosphate isomerase); thermophilic; 2.85A {Thermotoga maritima} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.55 E-value=0.012 Score=52.69 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=84.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+=++.+.++|+++.+=+. ..++. ++..+..+
T Consensus 81 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvG--Etleere~g~t~~vv~~Ql~~~l~~~~ 156 (255)
T 1b9b_A 81 PLMLQEIGVEYVIVGHSERRRIFKE--DDEFINRKVKAVLEKGMTPILCVG--ETLEEREKGLTFCVVEKQVREGFYGLD 156 (255)
T ss_dssp HHHHHTTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEEC--CCHHHHHHTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEECchhhccccCC--CHHHHHHHHHHHHHCCCEEEEEcC--CcHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 678899999999985 34 245566668888999999888774 23322 22233322
Q ss_pred ------CEEEEEeecC----CCCCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEE
Q 023494 189 ------DLVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANAL 251 (281)
Q Consensus 189 ------D~IlvmsV~p----G~~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~ 251 (281)
.+|. -+| |. |..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++. +.++|.+
T Consensus 157 ~~~~~~~vIA---YEPvWAIGT-G~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~ 232 (255)
T 1b9b_A 157 KEEAKRVVIA---YEPVWAIGT-GRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGG 232 (255)
T ss_dssp HHHHTTCEEE---ECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCCHHHHTTTSSSTTCCEE
T ss_pred HHHcCCEEEE---ECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcCccccCcceEEEcCcCCHHHHHHHHcCCCCCee
Confidence 2333 366 43 444444433 3334445543321 113678889999999999887 8999999
Q ss_pred EEcccccCCC--CHHHHH
Q 023494 252 VAGSAVFGAK--DYAEAI 267 (281)
Q Consensus 252 VvGSaIf~a~--dp~~~~ 267 (281)
-+|++..+++ |+.+.+
T Consensus 233 LVGgASLka~~~~F~~ii 250 (255)
T 1b9b_A 233 LVGGASLKESFIELARIM 250 (255)
T ss_dssp EESGGGTSTHHHHHHHHH
T ss_pred EeehHhhcCccccHHHHH
Confidence 9999999887 776544
|
| >2jgq_A Triosephosphate isomerase; glycolysis, pentose shunt, gluconeogenesis, lipid synthesis, fatty acid biosynthesis; HET: QGA; 2.3A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=96.53 E-value=0.016 Score=51.19 Aligned_cols=129 Identities=16% Similarity=0.177 Sum_probs=81.5
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH-----------hhccC--C
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-----------VLDVV--D 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~-----------~l~~v--D 189 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+.- ..+.-+. -+..+ +
T Consensus 74 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~~~t~~vv~~Ql~~l~~~ 149 (233)
T 2jgq_A 74 SKHLEELKIHTLLIGHSERRTLLKE--SPSFLKEKFDFFKSKNFKIVYCIGE--ELTTREKGFKAVKEFLSEQLENIDLN 149 (233)
T ss_dssp HHHHHHTTCCEEEECCHHHHHTTCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHHCHHHHHHHHHHHHTTSCTT
T ss_pred HHHHHHcCCCEEEeCchhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhcCchhHHHHHHHHHHhhhhh
Confidence 578899999999885 34 3456777888899999999887752 3321111 11111 1
Q ss_pred --EEEEEeecCCC---CCCccchhHHH-HHHHHHHHhhhcCCCCeEEEecCCChhcHHHH-HHcCCcEEEEcccccCCCC
Q 023494 190 --LVLIMSVNPGF---GGQSFIESQVK-KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV-IEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 190 --~IlvmsV~pG~---~GQ~f~~~~l~-kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGSaIf~a~d 262 (281)
- ++..-+|=+ +|..-.|+..+ -.+.+|+.+. .+++|.-.|+|+++|+.++ .+.++|.+-+|++..+++|
T Consensus 150 ~~~-~vIAYEPvWAIGTG~~At~e~a~ev~~~IR~~l~---~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgAsl~a~~ 225 (233)
T 2jgq_A 150 YPN-LVVAYEPIWAIGTKKSASLEDIYLTHGFLKQILN---QKTPLLYGGSVNTQNAKEILGIDSVDGLLIGSASWELEN 225 (233)
T ss_dssp CTT-EEEEECCGGGTTC--CCCHHHHHHHHHHHHHHSC---TTSCEEEESSCCTTTHHHHHTSTTCCEEEESGGGGSHHH
T ss_pred ccc-eEEEEeCHHHhCCCCCCCHHHHHHHHHHHHHHHh---cCCcEEEcCCcChhhHHHHhcCCCCCeeEecHHHhChHH
Confidence 1 122446622 35444444332 2334444432 2478888999999999975 5789999999999998776
Q ss_pred HHHHH
Q 023494 263 YAEAI 267 (281)
Q Consensus 263 p~~~~ 267 (281)
+.+.+
T Consensus 226 f~~ii 230 (233)
T 2jgq_A 226 FKTII 230 (233)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
|
| >2zbt_A Pyridoxal biosynthesis lyase PDXS; pyridoxine biosynthesis, structural genomics, NPPSFA; 1.65A {Thermus thermophilus} PDB: 2iss_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0017 Score=58.77 Aligned_cols=73 Identities=16% Similarity=0.171 Sum_probs=51.9
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE--ecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM--IVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm--v~dp~~~i~~~~~aGA 139 (281)
|+++..+..+ .+.++.+.++|+|++ ||+|.++. +++++.+++. .+++|+| +.+|..+.. +.++|+
T Consensus 80 Pvi~~~~~~~-~~~~~~~~~aGad~v-----~~~~~~~~---~~~~~~~~~~---~~~i~l~~~v~~~~~~~~-a~~~Ga 146 (297)
T 2zbt_A 80 PVMAKVRIGH-FVEAMILEAIGVDFI-----DESEVLTP---ADEEHHIDKW---KFKVPFVCGARNLGEALR-RIAEGA 146 (297)
T ss_dssp CEEEEEETTC-HHHHHHHHHTTCSEE-----EEETTSCC---SCSSCCCCGG---GCSSCEEEEESSHHHHHH-HHHTTC
T ss_pred CeEEEeccCC-HHHHHHHHHCCCCEE-----eeeCCCCh---HHHHHHHHHh---CCCceEEeecCCHHHHHH-HHHcCC
Confidence 5555555544 678999999999998 56666543 3455666553 2477888 778887654 689999
Q ss_pred CEEEEccc
Q 023494 140 DIVSVHCE 147 (281)
Q Consensus 140 d~Itvh~E 147 (281)
|+|.+|.+
T Consensus 147 d~I~v~G~ 154 (297)
T 2zbt_A 147 AMIRTKGE 154 (297)
T ss_dssp SEEEECCC
T ss_pred CEEEEccc
Confidence 99999954
|
| >2i9e_A Triosephosphate isomerase; 2.00A {Tenebrio molitor} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.027 Score=50.48 Aligned_cols=131 Identities=19% Similarity=0.231 Sum_probs=85.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhccCC
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDVVD 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~vD 189 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+.+.+=+.- ..+ .++..++.++
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pIvCvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 154 (259)
T 2i9e_A 79 PAMIKDVGADWVILGHSERRQIFGE--SDELIAEKVCHALESGLKVIACIGE--TLEEREAGKTEEVVFRQTKAIAAKVN 154 (259)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHcCCCEEEECchhhhhhcCC--CHHHHHHHHHHHHHCCCeEEEEcCC--cHHHHhcCCHHHHHHHHHHHHHhcch
Confidence 678999999999986 44 3566888888999999999887753 332 1333332211
Q ss_pred ---EEEEEeecC----CCCCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHH-HHcCCcEEEEcc
Q 023494 190 ---LVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGS 255 (281)
Q Consensus 190 ---~IlvmsV~p----G~~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGS 255 (281)
-+ +..-+| | +|..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++ .+.++|.+-+|+
T Consensus 155 ~~~~~-vIAYEPvWAIG-TG~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGg 232 (259)
T 2i9e_A 155 DWSNV-VIAYEPVWAIG-TGKTATPQQAQDVHKALRQWICENIDAKVGNSIRIQYGGSVTAANCKELASQPDIDGFLVGG 232 (259)
T ss_dssp CCTTE-EEEECCGGGTT-SSSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESG
T ss_pred hhcCE-EEEEcCHHHcC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCCCHhhHHHHhcCCCCCeeeech
Confidence 11 223466 4 3544444443 3334445444321 11367888999999999876 468999999999
Q ss_pred cccCCCCHHHHH
Q 023494 256 AVFGAKDYAEAI 267 (281)
Q Consensus 256 aIf~a~dp~~~~ 267 (281)
+..+++|+.+.+
T Consensus 233 AsL~a~~F~~Ii 244 (259)
T 2i9e_A 233 ASLKPEFVDIIN 244 (259)
T ss_dssp GGGSTHHHHHHT
T ss_pred HhhChHHHHHHH
Confidence 999988776544
|
| >1r2r_A TIM, triosephosphate isomerase; closed loop conformation in the ligand-free state, conformational heterogeneity, TIM-barrel; 1.50A {Oryctolagus cuniculus} SCOP: c.1.1.1 PDB: 1r2s_A 1r2t_A 2jk2_A 1wyi_A 1hti_A 2vom_A 1tph_1* 8tim_A 1sw3_A 1spq_A 1tpb_1* 1tpw_A* 1sw7_A 1tpu_A* 1tpc_1* 1ssd_A 1ssg_A 1sw0_A 1sq7_A 1tpv_A* ... | Back alignment and structure |
|---|
Probab=96.47 E-value=0.024 Score=50.52 Aligned_cols=130 Identities=16% Similarity=0.174 Sum_probs=82.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccCC
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVVD 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~vD 189 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+.- ..+. ++..+..++
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 155 (248)
T 1r2r_A 80 PGMIKDCGATWVVLGHSERRHVFGE--SDELIGQKVAHALSEGLGVIACIGE--KLDEREAGITEKVVFEQTKVIADNVK 155 (248)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCEEEECChhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhCCChHHHHHHHHHHHHhhhh
Confidence 678999999999985 34 3456777888889999999887752 3322 111222111
Q ss_pred ---EEEEEeecC----CCCCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHH-HHcCCcEEEEcc
Q 023494 190 ---LVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGS 255 (281)
Q Consensus 190 ---~IlvmsV~p----G~~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGS 255 (281)
-+ +..-+| |. |..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++ .+.++|.+-+|+
T Consensus 156 ~~~~~-vIAYEPvWAIGT-G~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGg 233 (248)
T 1r2r_A 156 DWSKV-VLAYEPVWAIGT-GKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGG 233 (248)
T ss_dssp CGGGE-EEEECCGGGSSS-SCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESG
T ss_pred hhhce-EEEEecHHhhCC-CCCCCHHHHHHHHHHHHHHHHHhcChhhcccccEEEcCCcCHhHHHHHHcCCCCCeeEech
Confidence 11 123366 43 444444443 2334444444321 11367888999999999866 568999999999
Q ss_pred cccCCCCHHHH
Q 023494 256 AVFGAKDYAEA 266 (281)
Q Consensus 256 aIf~a~dp~~~ 266 (281)
+..+++|+.+.
T Consensus 234 AsL~a~~F~~i 244 (248)
T 1r2r_A 234 ASLKPEFVDII 244 (248)
T ss_dssp GGGSTHHHHHH
T ss_pred HHhChHHHHHH
Confidence 99988776543
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.054 Score=50.81 Aligned_cols=137 Identities=18% Similarity=0.221 Sum_probs=83.7
Q ss_pred CCCCCeeEEEEe------cChhhHHHH-HHHcCCCEEEEccccc---------ccc--cHHHHHHHHHHc-CCcEEEE-E
Q 023494 113 VTDLPLDVHLMI------VEPEQRVPD-FIKAGADIVSVHCEQS---------STI--HLHRTLNQIKDL-GAKAGVV-L 172 (281)
Q Consensus 113 ~t~~~idaHLmv------~dp~~~i~~-~~~aGAd~Itvh~Ea~---------~~~--~i~~~l~~ik~~-G~k~Gla-i 172 (281)
.++.++.+-+-. .++. ++.. ...++++...+|.... ... ...+.++.+++. ++.+.+- +
T Consensus 117 ap~~~~~anlg~~ql~~~~~~~-~~~~av~~~~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~v 195 (368)
T 3vkj_A 117 APTIPIIANLGMPQLVKGYGLK-EFQDAIQMIEADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKES 195 (368)
T ss_dssp CSSSCEEEEEEGGGGGTTCCHH-HHHHHHHHTTCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEECS
T ss_pred CcCcceecCcCeeecCCCCCHH-HHHHHHHHhcCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEeC
Confidence 366777777666 2233 3433 3345777777775311 011 256677887765 6666664 3
Q ss_pred CCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc-------------------------hhHHHHHHHHHHHhhhcCCC
Q 023494 173 NPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI-------------------------ESQVKKISDLRRMCLEKGVN 226 (281)
Q Consensus 173 ~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~-------------------------~~~l~kI~~lr~l~~~~~~~ 226 (281)
......+..+.+.+ .+|.|.+- |.+|+.|. .-+..-|.++++..+ +
T Consensus 196 G~g~s~~~A~~l~~aGad~I~V~----g~GGt~~~~iE~~R~~~~~~~~~~~~~~~~~~g~pt~~~l~~v~~~~~----~ 267 (368)
T 3vkj_A 196 GNGISMETAKLLYSYGIKNFDTS----GQGGTNWIAIEMIRDIRRGNWKAESAKNFLDWGVPTAASIMEVRYSVP----D 267 (368)
T ss_dssp SSCCCHHHHHHHHHTTCCEEECC----CBTSBCHHHHHHHHHHHTTCTHHHHHHHTTTCSCBHHHHHHHHHHHST----T
T ss_pred CCCCCHHHHHHHHhCCCCEEEEe----CCCCCcccchhhhhcccccccchhhccccccccccHHHHHHHHHHHcC----C
Confidence 22335566666655 38999752 22443332 011233445555432 3
Q ss_pred CeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 227 PWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 227 ~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
++|.++|||. ...+.+.+.+|||.+-+|+.++
T Consensus 268 ipvia~GGI~~~~d~~kal~lGA~~v~ig~~~l 300 (368)
T 3vkj_A 268 SFLVGSGGIRSGLDAAKAIALGADIAGMALPVL 300 (368)
T ss_dssp CEEEEESSCCSHHHHHHHHHHTCSEEEECHHHH
T ss_pred CcEEEECCCCCHHHHHHHHHcCCCEEEEcHHHH
Confidence 7899999998 7889999999999999999865
|
| >2agk_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; TIM alpha/beta barrel; HET: CIT; 1.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0045 Score=55.35 Aligned_cols=70 Identities=16% Similarity=0.218 Sum_probs=46.0
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
.|++..+.|.+. +|.+.+.-.++ ..++-|+++.+.. ..+++++|||+.+++..++ +|||.+++|
T Consensus 39 dp~~~A~~~~~~Ga~~l~vvDL~~---------~n~~~i~~i~~~~-----~~pv~vgGGir~~~~~~~l-~Ga~~Viig 103 (260)
T 2agk_A 39 PSSYYAKLYKDRDVQGCHVIKLGP---------NNDDAAREALQES-----PQFLQVGGGINDTNCLEWL-KWASKVIVT 103 (260)
T ss_dssp CHHHHHHHHHHTTCTTCEEEEESS---------SCHHHHHHHHHHS-----TTTSEEESSCCTTTHHHHT-TTCSCEEEC
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCC---------CCHHHHHHHHhcC-----CceEEEeCCCCHHHHHHHh-cCCCEEEEC
Confidence 455555544332 45544443442 1233445554432 3678899999977999999 999999999
Q ss_pred ccccCC
Q 023494 255 SAVFGA 260 (281)
Q Consensus 255 SaIf~a 260 (281)
|+.++.
T Consensus 104 s~a~~~ 109 (260)
T 2agk_A 104 SWLFTK 109 (260)
T ss_dssp GGGBCT
T ss_pred cHHHhh
Confidence 999964
|
| >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.24 Score=44.11 Aligned_cols=191 Identities=15% Similarity=0.196 Sum_probs=126.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
-+.-++...++++| |-|-+ |--|.- -.-..-+..||+....++...+-. ..++++.+.+...+.||+-.|.
T Consensus 25 Pdpv~aA~~ae~aG-dgITv-----HlReDrRHI~d~Dv~~L~~~~~~~lNlE~a~--t~emi~ial~~kP~~vtLVPEk 96 (260)
T 3o6c_A 25 PDLLEAAFIVARHG-DQITL-----HVREDRRHAQDFDLENIIKFCKSPVNLECAL--NDEILNLALKLKPHRVTLVPEK 96 (260)
T ss_dssp SCHHHHHHHHHHHS-SEEEE-----ECCTTCSSSCHHHHHHHHHHCSSCEEEEECS--CHHHHHHHHHHCCSEEEECCCS
T ss_pred CCHHHHHHHHHHhC-CeEEE-----eeCCCcccCCHHHHHHHHHHcCCCEEeecCC--CHHHHHHHHHcCCCEEEECCCC
Confidence 35556677788899 98543 111221 234456777777655666664433 3458888899999999999874
Q ss_pred c-----------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-----------
Q 023494 149 S-----------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF----------- 205 (281)
Q Consensus 149 ~-----------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f----------- 205 (281)
. ..+.+..+++.+++.|+++.+.+.|. .+.++.-.+ .+|+|-+.|- .....+
T Consensus 97 reE~TTegGldv~~~~L~~~i~~L~~~GIrVSLFIDpd--~~qi~aA~~~GAd~IELhTG---~YA~a~~~~~sn~~~~~ 171 (260)
T 3o6c_A 97 REELTTEGGLCLNHAKLKQSIEKLQNANIEVSLFINPS--LEDIEKSKILKAQFIELHTG---HYANLHNALFSNISHTA 171 (260)
T ss_dssp GGGBCTTSSBCTTCTTHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHTTCSEEEECCH---HHHHHHHHHHSSGGGST
T ss_pred CCccCCCCChhhCHHHHHHHHHHHHHCCCEEEEEeCCC--HHHHHHHHHhCCCEEEEech---Hhhhhhhcccccccccc
Confidence 2 12347889999999999999999874 333443322 4899977543 111111
Q ss_pred ----------------chhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC---CCHHH
Q 023494 206 ----------------IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA---KDYAE 265 (281)
Q Consensus 206 ----------------~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a---~dp~~ 265 (281)
...-+++|.+..+.-.+ .++.+...-|+|.+|++.+.+ -+..=+-+|-+|+.. --.++
T Consensus 172 ~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A~~--lGL~VnAGHGL~y~Nv~~ia~ip~i~ElnIGHaiIa~Al~~Gl~~ 249 (260)
T 3o6c_A 172 FALKELDQDKKTLQAQFEKELQNLELCAKKGLE--LGLKVAAGHGLNYKNVKPVVKIKEICELNIGQSIVARSVFTGLQN 249 (260)
T ss_dssp TCCGGGCSCHHHHHHHHHHHHHHHHHHHHHHHH--TTCEEEECTTCCTTTTHHHHTCTTCCEEEECHHHHHHHHHHCHHH
T ss_pred ccccccccccchhhHHHHHHHHHHHHHHHHHHH--cCCEEecCCCCCHHHHHHHHhCCCCeEEecCHHHHHHHHHHhHHH
Confidence 12235555555555444 457888999999999998754 356778899887742 24678
Q ss_pred HHHHHHHhcC
Q 023494 266 AIKGIKTSKR 275 (281)
Q Consensus 266 ~~~~l~~~~~ 275 (281)
++++|++.++
T Consensus 250 AV~~m~~l~~ 259 (260)
T 3o6c_A 250 AILEMKELIK 259 (260)
T ss_dssp HHHHHHHHTC
T ss_pred HHHHHHHHhc
Confidence 8888888764
|
| >3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.068 Score=48.46 Aligned_cols=185 Identities=15% Similarity=0.099 Sum_probs=107.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHH----cCCCEEEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIK----AGADIVSV 144 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~----aGAd~Itv 144 (281)
+-.+.++.|.+.|+++|++- | |...- ..+.++.+++. .+..+-+..- .+ .+-++.+.+ +|++.|++
T Consensus 28 ~K~~i~~~L~~~Gv~~IE~g-----~-p~~~~~d~e~v~~i~~~~~~~~i~~l~~-~~-~~di~~a~~~~~~ag~~~v~i 99 (293)
T 3ewb_X 28 EKIQIALQLEKLGIDVIEAG-----F-PISSPGDFECVKAIAKAIKHCSVTGLAR-CV-EGDIDRAEEALKDAVSPQIHI 99 (293)
T ss_dssp HHHHHHHHHHHHTCSEEEEE-----C-GGGCHHHHHHHHHHHHHCCSSEEEEEEE-SS-HHHHHHHHHHHTTCSSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEEe-----C-CCCCccHHHHHHHHHHhcCCCEEEEEec-CC-HHHHHHHHHHHhhcCCCEEEE
Confidence 44456677888999998883 2 32211 12456666543 4444544322 22 223444444 68898887
Q ss_pred cccccccc---------------cHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhcc-----CCEEEEEeecCCCCC
Q 023494 145 HCEQSSTI---------------HLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLDV-----VDLVLIMSVNPGFGG 202 (281)
Q Consensus 145 h~Ea~~~~---------------~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~G 202 (281)
..-.. .. .+.+.++.+|+.|.++.+.+. +.++.+.+.++.+. +|.|.+- ...|
T Consensus 100 ~~~~S-d~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l~----DT~G 174 (293)
T 3ewb_X 100 FLATS-DVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDAGATVINIP----DTVG 174 (293)
T ss_dssp EEECS-HHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTCCEEEEE----CSSS
T ss_pred EecCc-HHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccCCCCCHHHHHHHHHHHHHcCCCEEEec----CCCC
Confidence 65431 11 246778888999999877554 23566665555442 6777552 2334
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l~ 271 (281)
-....++.+.++.+++.++.. .+.+|.+ |-|....|.-..+++||+.| =+++. ++.+.++.+..|+
T Consensus 175 ~~~P~~v~~lv~~l~~~~~~~-~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~v--d~sv~GlGeraGN~~~E~vv~~L~ 250 (293)
T 3ewb_X 175 YTNPTEFGQLFQDLRREIKQF-DDIIFASHCHDDLGMATANALAAIENGARRV--EGTINGIGERAGNTALEEVAVALH 250 (293)
T ss_dssp CCCHHHHHHHHHHHHHHCTTG-GGSEEEEECBCTTSCHHHHHHHHHHTTCCEE--EEBGGGCCTTTCBCBHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCc-cCceEEEEeCCCcChHHHHHHHHHHhCCCEE--EeeccccccccccHhHHHHHHHHH
Confidence 333344556677777765421 0145776 78888889999999999965 33333 2344555555554
|
| >3krs_A Triosephosphate isomerase; ssgcid, SBRI, emerald biostructures, university of washingto niaid, I structural genomics; 1.55A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.1 Score=47.06 Aligned_cols=131 Identities=20% Similarity=0.239 Sum_probs=84.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhccCC
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDVVD 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~vD 189 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+++.+-+.- .++ .+...++.++
T Consensus 103 ~~mLkd~G~~~ViiGHSERR~~f~E--tde~v~~Kv~~Al~~GL~pIlCVGE--tleere~g~t~~vv~~Ql~~~l~~v~ 178 (271)
T 3krs_A 103 CEMLKDMDVDCSLVGHSERRQYYSE--TDQIVNNKVKKGLENGLKIVLCIGE--SLSERETGKTNDVIQKQLTEALKDVS 178 (271)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCCEEEECchhhccccCC--CHHHHHHHHHHHHHCCCeEEEEeCC--cHHHHHCCCHHHHHHHHHHHHHhchH
Confidence 678899999999985 45 3456777788899999999887752 332 2233333221
Q ss_pred ---EEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEccc
Q 023494 190 ---LVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSA 256 (281)
Q Consensus 190 ---~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSa 256 (281)
-+ +..-+|=+ +|..-.|+..+. .+.+|+.+.+. ..+++|.-.|+|+++|+.++. +.++|.+-+|++
T Consensus 179 ~~~~~-vIAYEPvWAIGTG~tAtpe~aqevh~~IR~~l~~~~~~~~a~~vrILYGGSV~~~N~~el~~~~diDG~LVGgA 257 (271)
T 3krs_A 179 DLSNL-VIAYEPIWAIGTGVVATPGQAQEAHAFIREYVTRMYNPQVSSNLRIIYGGSVTPDNCNELIKCADIDGFLVGGA 257 (271)
T ss_dssp CCTTE-EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHCCEEECSCCCTTTHHHHHHSTTCCEEEESGG
T ss_pred hhcCE-EEEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCCccEEEcCCcCHHHHHHHhcCCCCCEEEeeHH
Confidence 11 22336632 355555555433 34455554321 113678899999999999764 688999999999
Q ss_pred ccCCCCHHHHH
Q 023494 257 VFGAKDYAEAI 267 (281)
Q Consensus 257 If~a~dp~~~~ 267 (281)
-.+ ++..+.+
T Consensus 258 SL~-~~F~~Ii 267 (271)
T 3krs_A 258 SLK-PTFAKII 267 (271)
T ss_dssp GGS-TTHHHHH
T ss_pred hhh-HHHHHHH
Confidence 887 5655443
|
| >3ta6_A Triosephosphate isomerase; HET: FLC; 1.41A {Mycobacterium tuberculosis} SCOP: c.1.1.0 PDB: 3tao_A* 3gvg_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.13 Score=46.28 Aligned_cols=130 Identities=15% Similarity=0.167 Sum_probs=83.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccCC
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVVD 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~vD 189 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+++.+-+.- .++. ++..+..++
T Consensus 85 ~~mLkd~G~~~ViiGHSERR~~f~E--tde~V~~Kv~~Al~~GL~pIlCvGE--tleeReag~t~~vv~~Ql~~~l~~l~ 160 (267)
T 3ta6_A 85 GAFLAKLGCSYVVVGHSERRTYHNE--DDALVAAKAATALKHGLTPIVCIGE--HLDVREAGNHVAHNIEQLRGSLAGLL 160 (267)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHTTC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHTTTCC
T ss_pred HHHHHHcCCCEEEEcchhhccccCC--CHHHHHHHHHHHHHCCCeEEEEeCC--CHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 678899999999985 44 2455667788889999999887752 3322 222333332
Q ss_pred -------EEEEEeecCCC---CCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEE
Q 023494 190 -------LVLIMSVNPGF---GGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALV 252 (281)
Q Consensus 190 -------~IlvmsV~pG~---~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~V 252 (281)
+|. -+|=+ +|..-.|+.. +-.+.+|+.+.+. ..+++|.=.|+++++|+.++. +..+|.+-
T Consensus 161 ~~~~~~vvIA---YEPVWAIGTG~tAtpe~aqevh~~IR~~l~~~~~~~~a~~~rIlYGGSV~~~N~~el~~~~diDG~L 237 (267)
T 3ta6_A 161 AEQIGSVVIA---YEPVWAIGTGRVASAADAQEVCAAIRKELASLASPRIADTVRVLYGGSVNAKNVGDIVAQDDVDGGL 237 (267)
T ss_dssp HHHHTTCEEE---ECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHTTSCEEECSCCCTTTHHHHHTSTTCCEEE
T ss_pred HHHhCCEEEE---ECChhhhcCCcCCCHHHHHHHHHHHHHHHHHhhChhhhccceEEEcCCcCHhHHHHHhcCCCCCEEE
Confidence 343 35522 3554444443 3344455554321 124678889999999999875 57799999
Q ss_pred EcccccCCCCHHHHH
Q 023494 253 AGSAVFGAKDYAEAI 267 (281)
Q Consensus 253 vGSaIf~a~dp~~~~ 267 (281)
+|++-.+.++..+.+
T Consensus 238 VGgASL~~~~F~~Ii 252 (267)
T 3ta6_A 238 VGGASLDGEHFATLA 252 (267)
T ss_dssp ECGGGGSHHHHHHHH
T ss_pred echHhcCHHHHHHHH
Confidence 999988755554443
|
| >3s6d_A Putative triosephosphate isomerase; seattle structural genomics center for infectious disease, S pathogenic fungus, eukaryote; 2.20A {Coccidioides immitis RS} | Back alignment and structure |
|---|
Probab=96.09 E-value=0.047 Score=50.06 Aligned_cols=140 Identities=16% Similarity=0.176 Sum_probs=88.4
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-HH---------------HHHHhhc
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-LS---------------AIECVLD 186 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-ie---------------~~~~~l~ 186 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+.+.+-+.-... -+ .++..+.
T Consensus 133 a~mLkd~G~~~ViiGHSERR~~f~E--tde~V~~Kv~aAl~~GL~pIvCVGEtleere~~~~~~g~t~~vv~~Ql~~~l~ 210 (310)
T 3s6d_A 133 PVCLRDMNVSIVELGHAERRAIFGE--TDQQVARKAAAAADQGLIPLVCIGEVSTLGPIVSEAIGRAVGECEAQIRPVLE 210 (310)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHHCC--CHHHHHHHHHHHHHTTCEEEEEECCCSCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCCEEEecccccccccCC--CHHHHHHHHHHHHHCCCEEEEEeCCcHHHhhhhccccccHHHHHHHHHHHHHh
Confidence 678899999999985 45 2455677788889999999887753321 11 1222232
Q ss_pred cC---CEEEEEeecCCC---CCCccchhHH-HHHHHHHHHhh----hcCCCCeEEEecCCChhcHHH--HHHcCCcEEEE
Q 023494 187 VV---DLVLIMSVNPGF---GGQSFIESQV-KKISDLRRMCL----EKGVNPWIEVDGGVGPKNAYK--VIEAGANALVA 253 (281)
Q Consensus 187 ~v---D~IlvmsV~pG~---~GQ~f~~~~l-~kI~~lr~l~~----~~~~~~~I~VDGGI~~e~i~~--~~~aGAD~~Vv 253 (281)
.+ .-+ +..-+|=+ +|+.-.|+.. +-.+.+|+.+. +...+++|.-.|+|+++++.+ + ..++|++-+
T Consensus 211 ~l~~~~~v-VIAYEPVWAIGTGk~Atpe~aqevh~~IR~~l~~~~~~~a~~vrILYGGSV~~~n~~~~~l-~~dVDG~LV 288 (310)
T 3s6d_A 211 ALPRDAPV-IFAYEPVWAIGKPQPARVDHVGAVVSGIRSVIERIDRHRKGEVRILYGGSAGPGLWGPGGL-GKEVDGMFL 288 (310)
T ss_dssp HSCTTSCE-EEEECCGGGC-----CCHHHHHHHHHHHHHHHHHHHTTCSSCEEEEEEEEECTTTTTTTSG-GGTCSEEEE
T ss_pred cCCcccce-EEEECChhhccCCCCCCHHHHHHHHHHHHHHHHHhhhcccCceeEEEcCccCHHHHhhhcc-cCCCCEEEe
Confidence 22 111 22446622 3544444433 22334444432 222356788899999999887 5 589999999
Q ss_pred cccccCCCCHHHHHHHHHHhc
Q 023494 254 GSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 254 GSaIf~a~dp~~~~~~l~~~~ 274 (281)
|++-.+++++.+.++++.+.+
T Consensus 289 GgASL~a~~F~~Ii~e~~~~~ 309 (310)
T 3s6d_A 289 GRFAHDIEGVRKVVREVEESL 309 (310)
T ss_dssp CGGGGSHHHHHHHHHHHHHHC
T ss_pred eheeecHHHHHHHHHHHHHHh
Confidence 999999888888887776554
|
| >3qst_A Triosephosphate isomerase, putative; TIM barrel; 1.75A {Trichomonas vaginalis} PDB: 3qsr_A | Back alignment and structure |
|---|
Probab=96.05 E-value=0.078 Score=47.36 Aligned_cols=130 Identities=18% Similarity=0.219 Sum_probs=83.2
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-H------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-A------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-~------------~~~~l~~v- 188 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+++.+-+.- .++ + ++..++.+
T Consensus 82 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pIlCvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 157 (255)
T 3qst_A 82 VPMIKSFGIEWTILGHSERRDILKE--DDEFLAAKAKFALENGMKIIYCCGE--HLSEREAGKASEFVSAQIEKMIPAIP 157 (255)
T ss_dssp HHHHHTTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHGGGSC
T ss_pred HHHHHHcCCCEEEECchhhhhhcCC--CHHHHHHHHHHHHHCCCeEEEEcCC--cHHHHHcCCHHHHHHHHHHHHHccCC
Confidence 678899999999985 34 2455667788889999999887752 332 1 33444321
Q ss_pred --C--EEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHH-HHcCCcEEEEc
Q 023494 189 --D--LVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVAG 254 (281)
Q Consensus 189 --D--~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvG 254 (281)
+ -+ +..-+|=+ +|..-.|+..+. .+.+|+.+.+. ..+++|.-.|+|+++|+.++ .+.++|.+-+|
T Consensus 158 ~~~~~~~-vIAYEPvWAIGTG~~Atpe~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVG 236 (255)
T 3qst_A 158 AGKWDDV-VIAYEPIWAIGTGKVASTQDAQEMCKVIRDILAAKVGADIANKVRILYGGSVKPNNCNELAACPDVDGFLVG 236 (255)
T ss_dssp TTCGGGE-EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCTTTHHHHHHSTTCCEEEEC
T ss_pred HHHhCCE-EEEECCHHHhcCCCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCcCHhHHHHHhcCCCCCEEEee
Confidence 1 11 12346622 355544544433 34445544321 12368889999999999876 46899999999
Q ss_pred ccccCCCCHHHH
Q 023494 255 SAVFGAKDYAEA 266 (281)
Q Consensus 255 SaIf~a~dp~~~ 266 (281)
++-.+ ++..+.
T Consensus 237 gASL~-~~F~~I 247 (255)
T 3qst_A 237 GASLE-AGFINI 247 (255)
T ss_dssp GGGGS-TTHHHH
T ss_pred HHHhh-HHHHHH
Confidence 99887 455443
|
| >1m6j_A TIM, TPI, triosephosphate isomerase; asymmetry, monomer stability; 1.50A {Entamoeba histolytica} SCOP: c.1.1.1 | Back alignment and structure |
|---|
Probab=96.01 E-value=0.023 Score=50.98 Aligned_cols=130 Identities=18% Similarity=0.314 Sum_probs=83.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+.+.+=+.- ..+. ++..+..+
T Consensus 87 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 162 (261)
T 1m6j_A 87 VGMLVDCQVPYVILGHSERRQIFHE--SNEQVAEKVKVAIDAGLKVIACIGE--TEAQRIANQTEEVVAAQLKAINNAIS 162 (261)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCCEEEECchhhhcccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhCCCHHHHHHHHHHHHHhcCC
Confidence 678899999999985 44 3456777888889999999887752 3321 11112222
Q ss_pred -----CEEEEEeecC----CCCCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHH-HHcCCcEEE
Q 023494 189 -----DLVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALV 252 (281)
Q Consensus 189 -----D~IlvmsV~p----G~~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~-~~aGAD~~V 252 (281)
..| ..-+| | +|..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++ .+.++|.+-
T Consensus 163 ~~~~~~~v--IAYEPvWAIG-TG~~Atpe~a~evh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~L 239 (261)
T 1m6j_A 163 KEAWKNII--LAYEPVWAIG-TGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFL 239 (261)
T ss_dssp TGGGGGEE--EEECCGGGSS-SSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEE
T ss_pred HHHcCCEE--EEECCHHHhC-CCCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCCcCHhhHHHHhcCCCCCeeE
Confidence 222 23466 4 3444444443 2334444443321 11367888999999999876 467999999
Q ss_pred EcccccCCCCHHHHH
Q 023494 253 AGSAVFGAKDYAEAI 267 (281)
Q Consensus 253 vGSaIf~a~dp~~~~ 267 (281)
+|++..+++|+.+.+
T Consensus 240 VGgAsL~a~~F~~ii 254 (261)
T 1m6j_A 240 VGGASLDAAKFKTII 254 (261)
T ss_dssp ESGGGGSHHHHHHHH
T ss_pred ecHHHhChHHHHHHH
Confidence 999999877666544
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.046 Score=52.13 Aligned_cols=128 Identities=16% Similarity=0.211 Sum_probs=78.9
Q ss_pred HHHcCCCEEEEcccc---------c-----------cc-c----cHHHHHHHHHHc-------CCcEEEEECCC------
Q 023494 134 FIKAGADIVSVHCEQ---------S-----------ST-I----HLHRTLNQIKDL-------GAKAGVVLNPA------ 175 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea---------~-----------~~-~----~i~~~l~~ik~~-------G~k~Glai~p~------ 175 (281)
+.++|.|+|-+|+-. . +. + -+.++++++|+. +..+|+=++|.
T Consensus 179 A~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~~~~~~~ 258 (419)
T 3l5a_A 179 AIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPEETRGSD 258 (419)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSCEEETTE
T ss_pred HHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccccccCCC
Confidence 457899999999753 0 11 1 145677777763 45688888873
Q ss_pred --CCHHHH----HHhhc--cCCEEEEEeecCCC----CCCccchh--HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcH
Q 023494 176 --TSLSAI----ECVLD--VVDLVLIMSVNPGF----GGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNA 240 (281)
Q Consensus 176 --t~ie~~----~~~l~--~vD~IlvmsV~pG~----~GQ~f~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i 240 (281)
...+.. +.+.+ .+|||-+..- +. ..+.+.+. ..+.++++++.+.. +++|.+-|||+ ++.+
T Consensus 259 ~G~~~ed~~~la~~L~~~~Gvd~I~vs~g--~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~---~iPVI~~GgI~t~e~A 333 (419)
T 3l5a_A 259 LGYTIDEFNQLIDWVMDVSNIQYLAIASW--GRHIYQNTSRTPGDHFGRPVNQIVYEHLAG---RIPLIASGGINSPESA 333 (419)
T ss_dssp EEECHHHHHHHHHHHHHHSCCCCEEECCT--TCCGGGCBCCCSSTTTTSBHHHHHHHHHTT---SSCEEECSSCCSHHHH
T ss_pred CCCCHHHHHHHHHHHHhhcCCcEEEEeeC--CccccccccCCCCccccHHHHHHHHHHcCC---CCeEEEECCCCCHHHH
Confidence 234333 33333 3899876432 11 01111111 12234555555431 36888999985 9999
Q ss_pred HHHHHcCCcEEEEcccccCCCCHHHHH
Q 023494 241 YKVIEAGANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 241 ~~~~~aGAD~~VvGSaIf~a~dp~~~~ 267 (281)
.++++. +|.|.+|++++..+|....+
T Consensus 334 e~~L~~-aDlVaiGR~~IanPdlv~ki 359 (419)
T 3l5a_A 334 LDALQH-ADMVGMSSPFVTEPDFVHKL 359 (419)
T ss_dssp HHHGGG-CSEEEESTHHHHCTTHHHHH
T ss_pred HHHHHh-CCcHHHHHHHHHCcHHHHHH
Confidence 999999 99999999998777754433
|
| >3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=95.96 E-value=0.13 Score=44.48 Aligned_cols=127 Identities=9% Similarity=0.059 Sum_probs=87.1
Q ss_pred CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeee-------CcccccccCCHHHHHHcCcC---CCCCeeEEEEec
Q 023494 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMD-------GRFVPNITIGPLVVDALRPV---TDLPLDVHLMIV 125 (281)
Q Consensus 56 ~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImD-------G~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~ 125 (281)
..++|+-+.++.--..+++.++.+.+.|.+.+++.... |++. ...+.+..++++|+. .++.+.++-...
T Consensus 8 ~~mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~ 86 (262)
T 3p6l_A 8 NGWRLGMQSYSFHLFPLTEALDKTQELGLKYIEIYPGHKLGGKWGDKVF-DFNLDAQTQKEIKELAASKGIKIVGTGVYV 86 (262)
T ss_dssp TTEEEEEEGGGGTTSCHHHHHHHHHHTTCCEEEECTTEECCGGGTTCEE-STTCCHHHHHHHHHHHHHTTCEEEEEEEEC
T ss_pred cCcEEEEEecccCCCCHHHHHHHHHHcCCCEEeecCCcccccccccccc-cccCCHHHHHHHHHHHHHcCCeEEEEeccC
Confidence 45789999999876799999999999999998885432 1110 123344455555442 566655543332
Q ss_pred Ch-----hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC----CHHHHHHhhc
Q 023494 126 EP-----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT----SLSAIECVLD 186 (281)
Q Consensus 126 dp-----~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t----~ie~~~~~l~ 186 (281)
+. .+.++.+.+.|++.|.+|.- .+.+.++.+.++++|+++++--.+.. ..+.+..+++
T Consensus 87 ~~~~~~~~~~i~~A~~lGa~~v~~~~~---~~~~~~l~~~a~~~gv~l~~En~~~~~~~~~~~~~~~ll~ 153 (262)
T 3p6l_A 87 AEKSSDWEKMFKFAKAMDLEFITCEPA---LSDWDLVEKLSKQYNIKISVHNHPQPSDYWKPENLLKAIS 153 (262)
T ss_dssp CSSTTHHHHHHHHHHHTTCSEEEECCC---GGGHHHHHHHHHHHTCEEEEECCSSSSSSSSHHHHHHHHT
T ss_pred CccHHHHHHHHHHHHHcCCCEEEecCC---HHHHHHHHHHHHHhCCEEEEEeCCCccccCCHHHHHHHHH
Confidence 21 23567778899999999964 35688899999999999999776653 3355666664
|
| >2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus} | Back alignment and structure |
|---|
Probab=95.94 E-value=0.073 Score=47.40 Aligned_cols=123 Identities=10% Similarity=0.072 Sum_probs=83.2
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEec------
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIV------ 125 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~------ 125 (281)
+.++..+|+.+|..-+...+.++++.+.+.|+|.+++.+=--.-.++...=.+.++.||+.+ ++|+.+++-..
T Consensus 15 ~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~~ 94 (257)
T 2yr1_A 15 IGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRAIDDQERVLATANGLRNIAGEIPILFTIRSEREGGQP 94 (257)
T ss_dssp ESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHSSSCCEEEECCCTTTTCCC
T ss_pred eCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccccCcHHHHHHHHHHHHHhccCCCEEEEEeecccCCCC
Confidence 45667789999998888777777888777899999997321100111111123456777765 68999888653
Q ss_pred ---ChhhHH---HHHHHcC-CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECC--CCC
Q 023494 126 ---EPEQRV---PDFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP--ATS 177 (281)
Q Consensus 126 ---dp~~~i---~~~~~aG-Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p--~t~ 177 (281)
+...|+ +.+.+.| +|+|-+-.... . ...++++.+++.|.++.+..+. .||
T Consensus 95 ~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~-~-~~~~l~~~~~~~~~kvI~S~Hdf~~tP 153 (257)
T 2yr1_A 95 IPLNEAEVRRLIEAICRSGAIDLVDYELAYG-E-RIADVRRMTEECSVWLVVSRHYFDGTP 153 (257)
T ss_dssp CSSCHHHHHHHHHHHHHHTCCSEEEEEGGGT-T-HHHHHHHHHHHTTCEEEEEEEESSCCC
T ss_pred CCCCHHHHHHHHHHHHHcCCCCEEEEECCCC-h-hHHHHHHHHHhCCCEEEEEecCCCCCc
Confidence 223344 4456778 99999987642 3 5778888889999999998752 455
|
| >1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A | Back alignment and structure |
|---|
Probab=95.92 E-value=0.032 Score=47.10 Aligned_cols=113 Identities=14% Similarity=0.215 Sum_probs=71.1
Q ss_pred CeeEEEEecChh---hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhh-ccCC
Q 023494 117 PLDVHLMIVEPE---QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVL-DVVD 189 (281)
Q Consensus 117 ~idaHLmv~dp~---~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l-~~vD 189 (281)
++.+=+...+++ ++++.+.+.|++.+.+|.+. .+..+.++.+|+. ++.+|+..- . ..+..+... ..+|
T Consensus 11 ~~i~~~~~~~~~~~~~~~~~~~~~G~~~iev~~~~---~~~~~~i~~ir~~~~~~~~ig~~~v-~-~~~~~~~a~~~Gad 85 (205)
T 1wa3_A 11 KIVAVLRANSVEEAKEKALAVFEGGVHLIEITFTV---PDADTVIKELSFLKEKGAIIGAGTV-T-SVEQCRKAVESGAE 85 (205)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHTTCCEEEEETTS---TTHHHHHHHTHHHHHTTCEEEEESC-C-SHHHHHHHHHHTCS
T ss_pred CEEEEEecCCHHHHHHHHHHHHHCCCCEEEEeCCC---hhHHHHHHHHHHHCCCCcEEEeccc-C-CHHHHHHHHHcCCC
Confidence 455545556665 35667788999999999884 3455678888775 466676321 2 334444443 3599
Q ss_pred EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEE
Q 023494 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~Vv 253 (281)
+| + .|++. +..++.. ++ . +.++.+ |..+++.+....++|+|++-.
T Consensus 86 ~i-v---~~~~~-----~~~~~~~---~~----~--g~~vi~-g~~t~~e~~~a~~~Gad~vk~ 130 (205)
T 1wa3_A 86 FI-V---SPHLD-----EEISQFC---KE----K--GVFYMP-GVMTPTELVKAMKLGHTILKL 130 (205)
T ss_dssp EE-E---CSSCC-----HHHHHHH---HH----H--TCEEEC-EECSHHHHHHHHHTTCCEEEE
T ss_pred EE-E---cCCCC-----HHHHHHH---HH----c--CCcEEC-CcCCHHHHHHHHHcCCCEEEE
Confidence 99 3 46653 3333322 22 1 345543 556788899999999998864
|
| >3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A* | Back alignment and structure |
|---|
Probab=95.89 E-value=0.043 Score=49.47 Aligned_cols=121 Identities=12% Similarity=0.087 Sum_probs=83.5
Q ss_pred cCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecC----
Q 023494 52 KFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVE---- 126 (281)
Q Consensus 52 ~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~d---- 126 (281)
.+-++..+|+.+|..-+...+.++++.+.+.|+|.+++.+=--.-......=.+.++.||+.+ ++|+.+++-...
T Consensus 34 ~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~~~~~~~v~~~l~~lr~~~~~~PiI~T~Rt~~eGG~ 113 (276)
T 3o1n_A 34 VVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFANVTTAESVLEAAGAIREIITDKPLLFTFRSAKEGGE 113 (276)
T ss_dssp EETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTTTTCHHHHHHHHHHHHHHCCSSCEEEECCBGGGTCS
T ss_pred EeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccccCcHHHHHHHHHHHHHhcCCCCEEEEEEEhhhCCC
Confidence 355667899999999998888888888887899999996321110111112234566777764 789999887631
Q ss_pred ----hhhHHH---HHHHcC-CCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 127 ----PEQRVP---DFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 127 ----p~~~i~---~~~~aG-Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
...|++ .+.+.| +|+|-+-... +.+.+.++++.+++.|.++.+.-+
T Consensus 114 ~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~-~~~~~~~l~~~a~~~~~kvI~S~H 167 (276)
T 3o1n_A 114 QALTTGQYIDLNRAAVDSGLVDMIDLELFT-GDDEVKATVGYAHQHNVAVIMSNH 167 (276)
T ss_dssp BCCCHHHHHHHHHHHHHHTCCSEEEEEGGG-CHHHHHHHHHHHHHTTCEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEECcC-CHHHHHHHHHHHHhCCCEEEEEee
Confidence 233444 456778 9999998764 234566777888999999988754
|
| >1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5 | Back alignment and structure |
|---|
Probab=95.87 E-value=0.054 Score=50.29 Aligned_cols=173 Identities=13% Similarity=0.094 Sum_probs=105.6
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC--CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t--~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
.+.++.+...|+|++-+|.-|+.+ ...--...++.++... +.++.|-+--.||. .++.+.++|+++|.++.-. +
T Consensus 53 p~~~e~a~~~GaD~vilDlEha~~--~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~-di~~~LdaGa~gImlP~V~-s 128 (339)
T 1izc_A 53 TFVTKVLAATKPDFVWIDVEHGMF--NRLELHDAIHAAQHHSEGRSLVIVRVPKHDEV-SLSTALDAGAAGIVIPHVE-T 128 (339)
T ss_dssp HHHHHHHHHTCCSEEEEETTTSCC--CHHHHHHHHHHHHHHTTTCSEEEEECCTTCHH-HHHHHHHHTCSEEEETTCC-C
T ss_pred HHHHHHHHhCCCCEEEEECCCCCC--cHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHH-HHHHHHhCCCCEEEeCCCC-C
Confidence 355777778899999999988843 2111111222222111 14444432223443 5777889999999888654 3
Q ss_pred cccHHHHHHHHHHc--------------C--------------------CcEEEEECCCCCHHHHHHhhc--cCCEEEEE
Q 023494 151 TIHLHRTLNQIKDL--------------G--------------------AKAGVVLNPATSLSAIECVLD--VVDLVLIM 194 (281)
Q Consensus 151 ~~~i~~~l~~ik~~--------------G--------------------~k~Glai~p~t~ie~~~~~l~--~vD~Ilvm 194 (281)
.+++.++.+.++.. | +.+++.|....-++.+.+++. .+|.+.+.
T Consensus 129 aee~~~~~~~~~~~p~g~Rg~~~~a~~~G~~~~~~~~~~~~y~~~a~~~i~vi~mIEt~~av~nldeIaa~~~vD~l~iG 208 (339)
T 1izc_A 129 VEEVREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFG 208 (339)
T ss_dssp HHHHHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCEEEC
T ss_pred HHHHHHHHHHhccCccCcccccchhhcccccccccccchhhhhhhcCcCceEEEEEChHHHHHHHHHHhcCCCCCEEEEC
Confidence 56677777766531 1 346666744444567777764 58998875
Q ss_pred ee----c--------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEcccc
Q 023494 195 SV----N--------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 195 sV----~--------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaI 257 (281)
+. . -|..+ .|..+.-++++..-...+|. ++ |+ -+++.+..++..|.+.+++++.+
T Consensus 209 ~~DLs~~~~~~~~~~lG~~~---~p~v~~a~~~iv~aaraaGk--~~---g~~~~d~~~a~~~~~~Gf~~l~~~~di 277 (339)
T 1izc_A 209 PGDYMIDAGLDLNGALSGVP---HPTFVEAMTKFSTAAQRNGV--PI---FGGALSVDMVPSLIEQGYRAIAVQFDV 277 (339)
T ss_dssp HHHHHHHTTCCTTCCTTSCC---CHHHHHHHHHHHHHHHHTTC--CE---EEECSSGGGHHHHHHTTEEEEEEEEHH
T ss_pred HHHHHhhhhcccchhhCCCC---CHHHHHHHHHHHHHHHHhCC--ce---eEecCCHHHHHHHHHhCCCEEEecHHH
Confidence 32 3 23333 56666666666666655543 32 22 24678889999999999998754
|
| >1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A* | Back alignment and structure |
|---|
Probab=95.86 E-value=0.029 Score=50.39 Aligned_cols=137 Identities=13% Similarity=0.100 Sum_probs=86.4
Q ss_pred CceEeEEEeccCccCHHHHHHHHHH-cCCCeEEEEeeeCc-------ccccccCCHHHHHHcCcCCCCCeeEEEEe--cC
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVEL-AGCDWIHVDVMDGR-------FVPNITIGPLVVDALRPVTDLPLDVHLMI--VE 126 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~-~G~d~iHiDImDG~-------fvpn~~~G~~~I~~ir~~t~~~idaHLmv--~d 126 (281)
...+.++|.+.+..++.+..+.+.+ .|+|.|++.+..-+ |..+..+-.++++++|+..+.|+.+.+.. .+
T Consensus 98 ~~p~~v~l~~~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~~~~~~~eii~~v~~~~~~pv~vk~~~~~~~ 177 (311)
T 1ep3_A 98 ELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVTD 177 (311)
T ss_dssp TSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSSC
T ss_pred CCcEEEEEcCCCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcCCHHHHHHHHHHHHHhcCCCEEEEECCChHH
Confidence 3458888988888888888888887 89999988754211 11111222677888887767888776542 35
Q ss_pred hhhHHHHHHHcCCCEEEE---------ccccc-----------cccc----HHHHHHHHHHcCCcEEEEECCC-CCHHHH
Q 023494 127 PEQRVPDFIKAGADIVSV---------HCEQS-----------STIH----LHRTLNQIKDLGAKAGVVLNPA-TSLSAI 181 (281)
Q Consensus 127 p~~~i~~~~~aGAd~Itv---------h~Ea~-----------~~~~----i~~~l~~ik~~G~k~Glai~p~-t~ie~~ 181 (281)
+.++.+.+.++|+|+|++ |.+.. +... ..+.++.+++.- ++=+..+-. ...+.+
T Consensus 178 ~~~~a~~l~~~G~d~i~v~~~~~g~~i~~~~~~~~~~~~~~g~~g~~~~~~~~~~i~~i~~~~-~ipvia~GGI~~~~d~ 256 (311)
T 1ep3_A 178 IVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQDV-DIPIIGMGGVANAQDV 256 (311)
T ss_dssp SHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTTC-SSCEEECSSCCSHHHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccccCcccCCccccCCCCcccCccchHHHHHHHHHHHHhc-CCCEEEECCcCCHHHH
Confidence 566788889999999999 54320 0000 135666776642 222333333 355666
Q ss_pred HHhhc-cCCEEEEE
Q 023494 182 ECVLD-VVDLVLIM 194 (281)
Q Consensus 182 ~~~l~-~vD~Ilvm 194 (281)
.+++. .+|.|.+.
T Consensus 257 ~~~l~~GAd~V~vg 270 (311)
T 1ep3_A 257 LEMYMAGASAVAVG 270 (311)
T ss_dssp HHHHHHTCSEEEEC
T ss_pred HHHHHcCCCEEEEC
Confidence 66654 59998763
|
| >1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1 | Back alignment and structure |
|---|
Probab=95.84 E-value=0.32 Score=44.84 Aligned_cols=193 Identities=15% Similarity=0.210 Sum_probs=103.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCccccc---ccCCHHHHHHcCcCCCCCeeEEEEecCh--hhHHHHHHHcCCCEEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPN---ITIGPLVVDALRPVTDLPLDVHLMIVEP--EQRVPDFIKAGADIVSV 144 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---~~~G~~~I~~ir~~t~~~idaHLmv~dp--~~~i~~~~~aGAd~Itv 144 (281)
..+.++++.+.+.|++.+.+ ..|..-|. ..+=.++++.+++. +. .+++ .... .+.++.+.++|.|.+.+
T Consensus 102 eei~~~~~~~~~~g~~~i~~--~gg~~~p~~~~~~~l~~ll~~ik~~-g~--~i~~-t~G~l~~e~l~~L~~aGvd~v~i 175 (369)
T 1r30_A 102 EQVLESARKAKAAGSTRFCM--GAAWKNPHERDMPYLEQMVQGVKAM-GL--EACM-TLGTLSESQAQRLANAGLDYYNH 175 (369)
T ss_dssp HHHHHHHHHHHHTTCSEEEE--EECCSSCCTTTHHHHHHHHHHHHHT-TS--EEEE-ECSSCCHHHHHHHHHHCCCEEEC
T ss_pred HHHHHHHHHHHHcCCcEEEE--EeCCCCCCcCCHHHHHHHHHHHHHc-CC--eEEE-ecCCCCHHHHHHHHHCCCCEEee
Confidence 34445555566778887764 33321122 12234555666653 33 3332 2221 24678899999999998
Q ss_pred ccccc-----------ccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc---c----CCEEEEEee--cCCCC-
Q 023494 145 HCEQS-----------STIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD---V----VDLVLIMSV--NPGFG- 201 (281)
Q Consensus 145 h~Ea~-----------~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~---~----vD~IlvmsV--~pG~~- 201 (281)
..++. +.+...+.++.+++.|+++.+ .+..+...+.+.+.+. . ++.|-+... .||..
T Consensus 176 ~les~~e~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~I~Gl~et~ed~~~~l~~l~~l~~~~~~i~~~~l~p~~gT~l 255 (369)
T 1r30_A 176 NLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPL 255 (369)
T ss_dssp CCBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTT
T ss_pred cCcCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeeeeeeEeeCCCCHHHHHHHHHHHHhhcCCCCEEEeeeeeecCCCcC
Confidence 87751 012355667778888887764 3333344444333322 1 556655443 45542
Q ss_pred -CCc-cc-hhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEEEcccccCC--CCHHHHHHHHHH
Q 023494 202 -GQS-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVAGSAVFGA--KDYAEAIKGIKT 272 (281)
Q Consensus 202 -GQ~-f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~VvGSaIf~a--~dp~~~~~~l~~ 272 (281)
..+ .. .+.++.+..+|.+++.. .+-+-+| ++.+.-...+.+||+.++.|..+... .++++..+.+++
T Consensus 256 ~~~~~~~~~~~~~~~~~~r~~l~~~----~i~i~~~~~~l~~~~~~~~l~~Gan~~~~g~~~~t~~~~~~~~~~~~i~~ 330 (369)
T 1r30_A 256 ADNDDVDAFDFIRTIAVARIMMPTS----YVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRK 330 (369)
T ss_dssp SSCCCCCHHHHHHHHHHHHHHCTTS----EEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCC----ceEeecchhhcChHHHHHHhhCCCceEEeCCeeeCCCCCCHHHHHHHHHH
Confidence 111 11 22344455556665532 2334443 33444556689999999988765543 445656555555
|
| >1ney_A TIM, triosephosphate isomerase; yeast, DHAP, dihydroxyacetone phosphate, michaelis complex; HET: FTR 13P; 1.20A {Saccharomyces cerevisiae} SCOP: c.1.1.1 PDB: 1nf0_A* 1i45_A* 1ypi_A 2ypi_A 7tim_A* 3ypi_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.059 Score=47.92 Aligned_cols=130 Identities=18% Similarity=0.265 Sum_probs=82.5
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-H------------HHHhhc---
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-A------------IECVLD--- 186 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-~------------~~~~l~--- 186 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+++.+=+.- ..+ + ++..+.
T Consensus 79 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 154 (247)
T 1ney_A 79 VDQIKDVGAKYVILGHSERRSYFHE--DDKFIADKTKFALGQGVGVILCIGE--TLEEKKAGKTLDVVERQLNAVLEEVK 154 (247)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTTCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHcCCCEEEECChhhccccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHHCCCHHHHHHHHHHHHHhchh
Confidence 678999999999985 34 3456777888889999999887752 322 1 111222
Q ss_pred cCCEEEEEeecC----CCCCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHH-HHcCCcEEEEcc
Q 023494 187 VVDLVLIMSVNP----GFGGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKV-IEAGANALVAGS 255 (281)
Q Consensus 187 ~vD~IlvmsV~p----G~~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~-~~aGAD~~VvGS 255 (281)
...-+ +..-+| | +|..-.|+..+ -.+.+|+.+.+. ..+++|.-.|+|+++|+.++ .+.++|.+-+|+
T Consensus 155 ~~~~~-vIAYEPvWAIG-TG~~Atpe~a~evh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGg 232 (247)
T 1ney_A 155 DFTNV-VVAYEPVXAIG-TGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGG 232 (247)
T ss_dssp CCTTE-EEEECCGGGTT-TSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESG
T ss_pred hhcCE-EEEECChhhcC-CCCCCCHHHHHHHHHHHHHHHHHhcChhhcccceEEEcCCcCHhHHHHHHcCCCCCeeEeeh
Confidence 11111 223466 4 35444444432 233444433221 11367888999999999865 578999999999
Q ss_pred cccCCCCHHHHH
Q 023494 256 AVFGAKDYAEAI 267 (281)
Q Consensus 256 aIf~a~dp~~~~ 267 (281)
+..+ +|+.+.+
T Consensus 233 AsL~-~~F~~Ii 243 (247)
T 1ney_A 233 ASLK-PEFVDII 243 (247)
T ss_dssp GGGS-THHHHHH
T ss_pred HHHH-HHHHHHH
Confidence 9998 8776543
|
| >4g1k_A Triosephosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel, TPIA; 2.35A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=95.77 E-value=0.14 Score=46.11 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=81.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~v- 188 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+.+.+-+.- .++ .++..++.+
T Consensus 105 a~MLkd~G~~~VIiGHSERR~~fgE--tde~V~~K~~~Al~~GL~pIlCVGE--tleeReag~t~~vv~~Ql~~~l~~~~ 180 (272)
T 4g1k_A 105 AGMVAEFGAAYAIVGHSERRAYHGE--SNETVAAKARRALAAGLTPIVCVGE--TLAEREAGTTEQVVGAQLDAVLAVLS 180 (272)
T ss_dssp HHHHHTTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHcCCCEEEECchhcccccCC--CHHHHHHHHHHHHHCCCeEEEEeCC--CHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 678999999999986 44 2455667778889999999887742 222 122233323
Q ss_pred -----CEEEEEeecCCC---CCCccchhHH-HHHHHHHHHhhhc-CCCCeEEEecCCChhcHHHHHHc-CCcEEEEcccc
Q 023494 189 -----DLVLIMSVNPGF---GGQSFIESQV-KKISDLRRMCLEK-GVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSAV 257 (281)
Q Consensus 189 -----D~IlvmsV~pG~---~GQ~f~~~~l-~kI~~lr~l~~~~-~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSaI 257 (281)
..|+ .=+|=+ +|+.-.|+-. +-...+|+.+.+. ..+++|.=.|+++++|+.++.+. .+|.+-+|++-
T Consensus 181 ~~~~~~vVI--AYEPVWAIGTG~tAt~e~aqevh~~IR~~l~~~~a~~~rIlYGGSV~~~N~~el~~~~dIDG~LVGgAS 258 (272)
T 4g1k_A 181 PDEAARIVV--AYEPVWAIGTGKSATAEQAQQVHAFLRGRLAAKGAGHVSLLYGGSVKADNAAELFGQPDIDGGLIGGAS 258 (272)
T ss_dssp HHHHTTCEE--EECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCTTSCEEECSCCCTTTHHHHHTSTTCCEEEECGGG
T ss_pred HHHcCCEEE--EECcHhhccCCCCCCHHHHHHHHHHHHHHHHHhhcCCceEEEcCCcCHhHHHHHhcCCCCCEEEechHh
Confidence 2222 335522 3544444433 3344555555421 22467888999999999998754 89999999987
Q ss_pred cCCCCHH
Q 023494 258 FGAKDYA 264 (281)
Q Consensus 258 f~a~dp~ 264 (281)
.++++..
T Consensus 259 L~~~~F~ 265 (272)
T 4g1k_A 259 LKSGDFL 265 (272)
T ss_dssp GSHHHHH
T ss_pred cCHHHHH
Confidence 7654443
|
| >1jvn_A Glutamine, bifunctional histidine biosynthesis protein hishf; substrate channeling, amidotransferase, TIM-barrel AS A SUBS tunnel; HET: 143; 2.10A {Saccharomyces cerevisiae} SCOP: c.1.2.1 c.23.16.1 PDB: 1ox4_B* 1ox5_A* 1ox6_A 1ox4_A | Back alignment and structure |
|---|
Probab=95.72 E-value=0.013 Score=57.86 Aligned_cols=78 Identities=13% Similarity=0.094 Sum_probs=52.8
Q ss_pred CHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh------------hcHHHH
Q 023494 177 SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP------------KNAYKV 243 (281)
Q Consensus 177 ~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~------------e~i~~~ 243 (281)
|++..+.|.+ .+|.+.+.-......+..-.+..++.|+++++. ..++|.|+|||+. +++..+
T Consensus 282 p~~~A~~~~~~Ga~~l~~~dl~~~~~~~~~~~~~~~~i~~i~~~-----~~ipi~vgGGIr~~~d~~~~~~~~~~~a~~~ 356 (555)
T 1jvn_A 282 PVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKT-----VFVPLTVGGGIKDIVDVDGTKIPALEVASLY 356 (555)
T ss_dssp HHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTT-----CCSCEEEESSCSCEECTTCCEECHHHHHHHH
T ss_pred HHHHHHHHHHcCCCEEEEEeCCccccccCCCchHHHHHHHHHhh-----CCCcEEEeCccccchhcccccchHHHHHHHH
Confidence 5555555544 378887776664434433334456666655432 3578999999985 559999
Q ss_pred HHcCCcEEEEcccccC
Q 023494 244 IEAGANALVAGSAVFG 259 (281)
Q Consensus 244 ~~aGAD~~VvGSaIf~ 259 (281)
.++|||.+++||+.+.
T Consensus 357 l~aGad~V~igt~~~~ 372 (555)
T 1jvn_A 357 FRSGADKVSIGTDAVY 372 (555)
T ss_dssp HHHTCSEEEECHHHHH
T ss_pred HHcCCCEEEECCHHhh
Confidence 9999999999998874
|
| >3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.33 Score=46.34 Aligned_cols=181 Identities=20% Similarity=0.216 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCC-HHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-PLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G-~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
+-.+.++.|.+.|++.|++ | | |..+-+ .+.++.+.+. ....+.+++ ..+.. -++.+.++|++.|++-.-+
T Consensus 62 eKl~Ia~~L~~~Gv~~IEv----G-~-P~asp~d~~~~~~i~~~~~~~~v~~~~-r~~~~-di~~A~~aG~~~V~i~~s~ 133 (423)
T 3ivs_A 62 KKIQIAKALDNFGVDYIEL----T-S-PVASEQSRQDCEAICKLGLKCKILTHI-RCHMD-DARVAVETGVDGVDVVIGT 133 (423)
T ss_dssp HHHHHHHHHHHHTCSEEEE----C-C-TTSCHHHHHHHHHHHTSCCSSEEEEEE-ESCHH-HHHHHHHTTCSEEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEE----e-e-cccCHHHHHHHHHHHhcCCCCEEEEee-ccChh-hHHHHHHcCCCEEEEEeec
Confidence 3335556778899999888 4 3 433222 2345555543 122232322 23433 3678899999998875321
Q ss_pred c----------c----cccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhc-----cCCEEEEEeecCCCCCCccch
Q 023494 149 S----------S----TIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 149 ~----------~----~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+ + .+...+.++.+|+.|.++.+..... ++.+.+.++.+ .+|.|.+- -..|-....
T Consensus 134 Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~eda~r~d~~~~~~v~~~~~~~Ga~~i~l~----DTvG~~~P~ 209 (423)
T 3ivs_A 134 SQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSEDSFRSDLVDLLSLYKAVDKIGVNRVGIA----DTVGCATPR 209 (423)
T ss_dssp -------------CHHHHHHHHHHHHHHTTTCEEEEEEESGGGSCHHHHHHHHHHHHHHCCSEEEEE----ETTSCCCHH
T ss_pred cHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEccCcCCCHHHHHHHHHHHHHhCCCccccC----CccCcCCHH
Confidence 1 0 1234567888999999988765432 34554444433 26776552 222322223
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHH
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGI 270 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l 270 (281)
++.+.++.+++.. +.+|.+ |-|....|.-..+++||+.| -++|. ++.+.++.+..|
T Consensus 210 ~v~~lv~~l~~~~-----~~~i~~H~Hnd~GlAvAN~laAv~aGa~~v--d~ti~GlGERaGNa~Le~vv~~L 275 (423)
T 3ivs_A 210 QVYDLIRTLRGVV-----SCDIECHFHNDTGMAIANAYCALEAGATHI--DTSILGIGERNGITPLGALLARM 275 (423)
T ss_dssp HHHHHHHHHHHHC-----SSEEEEEEBCTTSCHHHHHHHHHHTTCCEE--EEBGGGCSSTTCBCBHHHHHHHH
T ss_pred HHHHHHHHHHhhc-----CCeEEEEECCCCchHHHHHHHHHHhCCCEE--EEecccccCcccchhHHHHHHHH
Confidence 4455566666543 356776 88998889999999999955 34444 234566555443
|
| >1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=95.66 E-value=0.017 Score=50.31 Aligned_cols=48 Identities=23% Similarity=0.278 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.++.++++++. .++++.+.|||+ .+.+.+++++|||.+++|++.+..+
T Consensus 63 ~~~~i~~i~~~-----~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p 111 (252)
T 1ka9_F 63 LLDVVARVAER-----VFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAAVRRP 111 (252)
T ss_dssp HHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHHHHCT
T ss_pred cHHHHHHHHHh-----CCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHHHhCc
Confidence 34455555432 357899999999 8899999999999999999988544
|
| >3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri} | Back alignment and structure |
|---|
Probab=95.64 E-value=0.072 Score=48.76 Aligned_cols=180 Identities=19% Similarity=0.137 Sum_probs=101.9
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----cCCHHHHHHcCcCCCCCeeEEEEec-ChhhHHHHHHHcCCCEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----TIGPLVVDALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIV 142 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----~~G~~~I~~ir~~t~~~idaHLmv~-dp~~~i~~~~~aGAd~I 142 (281)
+...+.++++.+.+.|++.+.+ ..|. .|.. ..=.++++.+|+..++. +++-.. -..+.++.+.++|++.+
T Consensus 92 s~eei~~~~~~~~~~G~~~i~l--~gGe-~p~~~~~~~~~~~l~~~ik~~~~i~--i~~s~g~~~~e~l~~L~~aG~~~i 166 (350)
T 3t7v_A 92 TMEEIKETCKTLKGAGFHMVDL--TMGE-DPYYYEDPNRFVELVQIVKEELGLP--IMISPGLMDNATLLKAREKGANFL 166 (350)
T ss_dssp CHHHHHHHHHHHTTSCCSEEEE--EECC-CHHHHHSTHHHHHHHHHHHHHHCSC--EEEECSSCCHHHHHHHHHTTEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEE--eeCC-CCccccCHHHHHHHHHHHHhhcCce--EEEeCCCCCHHHHHHHHHcCCCEE
Confidence 4445556666666778887765 4553 1321 11256677776543433 333221 11346788999999999
Q ss_pred EEcccccc------------cccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc-----cCCEEEEEeecC--CCC
Q 023494 143 SVHCEQSS------------TIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD-----VVDLVLIMSVNP--GFG 201 (281)
Q Consensus 143 tvh~Ea~~------------~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~-----~vD~IlvmsV~p--G~~ 201 (281)
.+..|+.+ .++..+.++.+++.|++++. .+......+.+.+.+. .++.|.+....| |..
T Consensus 167 ~i~lEt~~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l~~~~v~~~~f~p~~gT~ 246 (350)
T 3t7v_A 167 ALYQETYDTELYRKLRVGQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPQEGTP 246 (350)
T ss_dssp ECCCBCSCHHHHHHHSTTCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHTCCSEEEEEECCCCTTST
T ss_pred EEeeecCCHHHHHHhCCCCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhCCCCEEEecceeeCCCCc
Confidence 98877631 12355677888899988765 3444444444433332 267787776655 431
Q ss_pred --CC--ccchhHHHHHHHHHHHhhhcCCCCeEE-EecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 202 --GQ--SFIESQVKKISDLRRMCLEKGVNPWIE-VDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 202 --GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~-VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
.. .-..+.++.+..+|-+++.. +++.. +-.|+ +.....+.+||| ++|+.+.
T Consensus 247 l~~~~~~~~~e~l~~ia~~Rl~lp~~--~I~a~~~~~g~--~~~~~~l~~Gan--~~~~~~~ 302 (350)
T 3t7v_A 247 LEGFRDKSNLSELKIISVLRLMFPKR--LIPASLDLEGI--DGMVLRLNAGAN--IVTSILP 302 (350)
T ss_dssp TTTCCCCCCCCHHHHHHHHHHHSTTS--BCEEEHHHHHH--HHHHHHHHTTCC--EEEEECC
T ss_pred CccCCCCChHHHHHHHHHHHHhCCCc--CccccccccCh--hHHHHHHhcCCc--eecCCCC
Confidence 11 11234566677777776542 33322 22333 456678999999 3455554
|
| >3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=95.61 E-value=0.14 Score=47.07 Aligned_cols=187 Identities=15% Similarity=0.106 Sum_probs=109.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc----CCCEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA----GADIVS 143 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a----GAd~It 143 (281)
.+-.+.++.|.+.|+++|++ | | |..+- ..+.++.+++. ++..+-+. .-.+. +.++.+.++ |++.|+
T Consensus 28 ~~Kl~ia~~L~~~Gv~~IE~----g-~-p~~~~~d~e~v~~i~~~~~~~~i~~l-~r~~~-~~i~~a~~al~~ag~~~v~ 99 (325)
T 3eeg_A 28 EEKIIVAKALDELGVDVIEA----G-F-PVSSPGDFNSVVEITKAVTRPTICAL-TRAKE-ADINIAGEALRFAKRSRIH 99 (325)
T ss_dssp THHHHHHHHHHHHTCSEEEE----E-C-TTSCHHHHHHHHHHHHHCCSSEEEEE-CCSCH-HHHHHHHHHHTTCSSEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEE----e-C-CCCCHhHHHHHHHHHHhCCCCEEEEe-ecCCH-HHHHHHHHhhcccCCCEEE
Confidence 34456677888899999888 3 3 32111 12345666553 44333331 11232 345666666 999988
Q ss_pred Eccccc--------------ccccHHHHHHHHHHcCCcEEEEEC--CCCCHHHHHHhhc-----cCCEEEEEeecCCCCC
Q 023494 144 VHCEQS--------------STIHLHRTLNQIKDLGAKAGVVLN--PATSLSAIECVLD-----VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 144 vh~Ea~--------------~~~~i~~~l~~ik~~G~k~Glai~--p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~G 202 (281)
+..-.. ..+.+.+.++.+|+.|..+.+... ..++.+.+.++++ .+|.|.+ +...|
T Consensus 100 i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~f~~~d~~~~~~~~~~~~~~~~~~~G~~~i~l----~DT~G 175 (325)
T 3eeg_A 100 TGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVEFFCEDAGRADQAFLARMVEAVIEAGADVVNI----PDTTG 175 (325)
T ss_dssp EEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEEEEEETGGGSCHHHHHHHHHHHHHHTCSEEEC----CBSSS
T ss_pred EEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEccccccchHHHHHHHHHHHHhcCCCEEEe----cCccC
Confidence 764321 122356788999999998766432 2356666555544 2676654 33334
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l~ 271 (281)
-....++.+.++.+++.++.. .+.+|.+ |-|....|.-..+++||+.|= +++. ++.+.++.+..|+
T Consensus 176 ~~~P~~v~~lv~~l~~~~~~~-~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd--~tv~GlGer~GN~~lE~vv~~L~ 251 (325)
T 3eeg_A 176 YMLPWQYGERIKYLMDNVSNI-DKAILSAHCHNDLGLATANSLAALQNGARQVE--CTINGIGERAGNTALEEVVMAME 251 (325)
T ss_dssp CCCHHHHHHHHHHHHHHCSCG-GGSEEEECBCCTTSCHHHHHHHHHHHTCCEEE--EBGGGCCSTTCCCBHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCC-CceEEEEEeCCCCCHHHHHHHHHHHhCCCEEE--EecccccccccchhHHHHHHHHH
Confidence 333344556677777665410 0156776 889998899999999999763 2232 2345565555554
|
| >1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A | Back alignment and structure |
|---|
Probab=95.60 E-value=0.022 Score=49.64 Aligned_cols=48 Identities=17% Similarity=0.258 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAK 261 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~ 261 (281)
.++.++++++. .++++.+.|||+ ++.+.++.++|||.+++|++.+..+
T Consensus 62 ~~~~i~~i~~~-----~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~~l~~p 110 (253)
T 1thf_D 62 MLELVEKVAEQ-----IDIPFTVGGGIHDFETASELILRGADKVSINTAAVENP 110 (253)
T ss_dssp HHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHHCT
T ss_pred cHHHHHHHHHh-----CCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChHHHhCh
Confidence 34455555432 357899999999 7889999999999999999988543
|
| >3kxq_A Triosephosphate isomerase; ssgcid, NIH, niaid, SBRI, UW, gluconeogenesis, glycolysis, pentose shunt; 1.60A {Bartonella henselae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.12 Score=46.59 Aligned_cols=128 Identities=20% Similarity=0.274 Sum_probs=79.3
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhcc-C
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDV-V 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~-v 188 (281)
.+++.++|+++|.+. .| +++.+.+-++.+.++|+++.+-+.- .++ .++..++. .
T Consensus 105 ~~mLkd~G~~~VIiGHSERR~~f~E--tde~V~~Kv~~Al~~GL~pIlCVGE--tleeRe~g~t~~vv~~Ql~~~l~~~~ 180 (275)
T 3kxq_A 105 AFMLKEAGASHVIIGHSERRTVYQE--SDAIVRAKVQAAWRAGLVALICVGE--TLEERKSNKVLDVLTRQLEGSLPDGA 180 (275)
T ss_dssp HHHHHHHTCSEEEESCHHHHHHTCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHcCCCEEEECchhhccccCC--CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHCCCHHHHHHHHHHHHHcCCc
Confidence 678999999999985 45 2455667778889999999887752 221 13333332 1
Q ss_pred C---EEEEEeecCCC---CCCccchhHH-HHHHHHHHHhhhc----CCCCeEEEecCCChhcHHHHHHc-CCcEEEEccc
Q 023494 189 D---LVLIMSVNPGF---GGQSFIESQV-KKISDLRRMCLEK----GVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSA 256 (281)
Q Consensus 189 D---~IlvmsV~pG~---~GQ~f~~~~l-~kI~~lr~l~~~~----~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSa 256 (281)
+ .| ..-+|=+ +|..-.|+.. +-.+.+|+.+.+. ..+++|.=.|+++++|+.++.+. .+|.+-+|++
T Consensus 181 ~~~~vV--IAYEPVWAIGTGktAt~e~aqevh~~IR~~l~~~~~~~a~~~rIlYGGSV~~~Na~el~~~~dIDG~LVGgA 258 (275)
T 3kxq_A 181 TAENII--IAYEPVWAVGTGNTATSADVAEVHAFIHHKMHSRFGDEGAKIRLLYGGSVKPSNAFELLSTAHVNGALIGGA 258 (275)
T ss_dssp CTTTEE--EEECCCC--------CHHHHHHHHHHHHHHHHHHHHHHHTTSCEEECSCCCTTTHHHHHTSTTCCEEEESGG
T ss_pred ccCCEE--EEECChhhhcCCCCCCHHHHHHHHHHHHHHHHHhhhhhcccceEEEcCCcCHhHHHHHHcCCccceEEeehh
Confidence 1 22 2336633 2544333333 2233444444321 22578888999999999998754 8999999998
Q ss_pred ccCCCCHH
Q 023494 257 VFGAKDYA 264 (281)
Q Consensus 257 If~a~dp~ 264 (281)
-.+.++..
T Consensus 259 SL~~~~F~ 266 (275)
T 3kxq_A 259 SLKAIDFL 266 (275)
T ss_dssp GSSHHHHH
T ss_pred hcCHHHHH
Confidence 77654443
|
| >2uv8_G Fatty acid synthase subunit beta (FAS1); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_G* 3hmj_G* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.057 Score=60.66 Aligned_cols=146 Identities=18% Similarity=0.266 Sum_probs=94.5
Q ss_pred HHHHHcCcCC--CCCeeEEEEecChh------hHHHHHHHcCCCE--EEEcccccccccHHHHHHHHHHcCCcEEEEECC
Q 023494 105 LVVDALRPVT--DLPLDVHLMIVEPE------QRVPDFIKAGADI--VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174 (281)
Q Consensus 105 ~~I~~ir~~t--~~~idaHLmv~dp~------~~i~~~~~aGAd~--Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p 174 (281)
+.|+.+|+.+ +.++-+.+|..+|. .+++.+.+.|+.. |++..- .+.+....+.+++.|+++. .+.|
T Consensus 632 ~~I~~~~~~t~~~~~~gvN~~~~~~~~~~~~~~~~~~~~~~gv~i~~v~~~ag---~p~~~~~~~~i~~lG~~vi-~~~~ 707 (2051)
T 2uv8_G 632 AAIDSVVSQIEKGSTFGINLIYVNPFMLQWGIPLIKELRSKGYPIQFLTIGAG---VPSLEVASEYIETLGLKYL-GLKP 707 (2051)
T ss_dssp HHHHHHHHHSCTTCCEEEEEETTCTTHHHHHHHHHHHHHHTTCSEEEEEEESS---CCCHHHHHHHHHHSCCSCE-EECC
T ss_pred HHHHHHHHhcCCCCceEEEEeecChhhhhhhHHHHHHHHHcCCCcceEEecCC---CCchhhHHHHHHHcCCEEE-EecC
Confidence 3455566654 47999999999885 5678888999888 887654 2345566777788888875 4444
Q ss_pred CCCH--HHHHHhhc-cCCEEEEEeecCCCC-CC----ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHH-
Q 023494 175 ATSL--SAIECVLD-VVDLVLIMSVNPGFG-GQ----SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVI- 244 (281)
Q Consensus 175 ~t~i--e~~~~~l~-~vD~IlvmsV~pG~~-GQ----~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~- 244 (281)
++.. .......+ .+|.++++.++=|-+ |. .+..-++.-+.++++. .++++.+.|||. .+.+..++
T Consensus 708 ~~~~a~~~~~~~~~~g~d~~ii~~~~G~eaGGH~g~~d~~~~~l~l~~~v~~~-----~~ipviaaGGi~dg~~~~aaL~ 782 (2051)
T 2uv8_G 708 GSIDAISQVINIAKAHPNFPIALQWTGGRGGGHHSFEDAHTPMLQMYSKIRRH-----PNIMLIFGSGFGSADDTYPYLT 782 (2051)
T ss_dssp CSHHHHHHHHHHHHHSTTSCEEEEECCSSCSEECCSCCSSHHHHHHHHHHTTC-----TTBCCEEESSCCSHHHHTHHHH
T ss_pred chHHHHHHHHHHHHhCCCceeEEEEEccCcCCCCCcccccccHHHHHHHHHhc-----CCceEEEeCCCCCHHHHHHHHc
Confidence 4332 22233333 488865555542222 21 2223344445555543 358899999999 55666667
Q ss_pred ----------HcCCcEEEEcccccC
Q 023494 245 ----------EAGANALVAGSAVFG 259 (281)
Q Consensus 245 ----------~aGAD~~VvGSaIf~ 259 (281)
..|||.+-+||.+.-
T Consensus 783 g~w~~~~g~~~lgadGv~~GTrf~~ 807 (2051)
T 2uv8_G 783 GEWSTKFDYPPMPFDGFLFGSRVMI 807 (2051)
T ss_dssp TCGGGTTTCCCCCCSCEECSGGGTT
T ss_pred cccccccCccCCCCceeeechHHHh
Confidence 799999999988653
|
| >3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C* | Back alignment and structure |
|---|
Probab=95.43 E-value=0.19 Score=46.58 Aligned_cols=139 Identities=19% Similarity=0.225 Sum_probs=88.6
Q ss_pred CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEee--------e--C-cccccccCCHHHHHHcCcCCCCCeeEEEEe
Q 023494 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVM--------D--G-RFVPNITIGPLVVDALRPVTDLPLDVHLMI 124 (281)
Q Consensus 56 ~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDIm--------D--G-~fvpn~~~G~~~I~~ir~~t~~~idaHLmv 124 (281)
....+...|...|+..+.++.+.+.+.|+|.|.+-.- | | .+..+..+-.++++++++..+.|+.+-+-+
T Consensus 56 ~~~p~~vQL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~ 135 (350)
T 3b0p_A 56 EEHPIALQLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRL 135 (350)
T ss_dssp GGCSEEEEEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEES
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEec
Confidence 3456888999888888999999999999998766431 1 1 111112334456777777667888874432
Q ss_pred --cC------hhhHHHHHHHcCCCEEEEccccc----c-c------ccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHh
Q 023494 125 --VE------PEQRVPDFIKAGADIVSVHCEQS----S-T------IHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECV 184 (281)
Q Consensus 125 --~d------p~~~i~~~~~aGAd~Itvh~Ea~----~-~------~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~ 184 (281)
.+ ..++++.+.++|+|+|++|.-.. + . .--.+.++.+++.--++=|..|-+ +..+.++++
T Consensus 136 g~~~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s~eda~~~ 215 (350)
T 3b0p_A 136 GLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRSLEEALFH 215 (350)
T ss_dssp CBTTCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCSHHHHHHH
T ss_pred CcCccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCCHHHHHHH
Confidence 22 23456788899999999997420 0 0 001356677776521233344444 466777777
Q ss_pred hccCCEEEEE
Q 023494 185 LDVVDLVLIM 194 (281)
Q Consensus 185 l~~vD~Ilvm 194 (281)
+..+|.|.+.
T Consensus 216 l~GaD~V~iG 225 (350)
T 3b0p_A 216 LKRVDGVMLG 225 (350)
T ss_dssp HTTSSEEEEC
T ss_pred HhCCCEEEEC
Confidence 7789999874
|
| >2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.03 Score=48.47 Aligned_cols=74 Identities=14% Similarity=0.289 Sum_probs=49.2
Q ss_pred CHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 177 SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 177 ~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
+.+..+.+.+ .+|+|.+...+..+.+.. .. +.|+++++.. ++++.+.|||+ ++.+..++++|||.+++|
T Consensus 33 ~~~~a~~~~~~Gad~i~v~~~d~~~~~~~---~~-~~i~~i~~~~-----~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg 103 (244)
T 2y88_A 33 AVDAALGWQRDGAEWIHLVDLDAAFGRGS---NH-ELLAEVVGKL-----DVQVELSGGIRDDESLAAALATGCARVNVG 103 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHTTSCC---CH-HHHHHHHHHC-----SSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEEcCcccccCCC---hH-HHHHHHHHhc-----CCcEEEECCCCCHHHHHHHHHcCCCEEEEC
Confidence 4444444433 367776654333333322 11 4556665543 47899999999 789999999999999999
Q ss_pred ccccC
Q 023494 255 SAVFG 259 (281)
Q Consensus 255 SaIf~ 259 (281)
++.+.
T Consensus 104 ~~~l~ 108 (244)
T 2y88_A 104 TAALE 108 (244)
T ss_dssp HHHHH
T ss_pred chHhh
Confidence 98774
|
| >1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.027 Score=48.94 Aligned_cols=74 Identities=15% Similarity=0.282 Sum_probs=47.7
Q ss_pred CHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 177 SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 177 ~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
+.+..+.+.+ .+|+|.+...+..+.+... . +.|+++++.. +.++.+.|||+ ++.+..++++|||.+++|
T Consensus 34 ~~~~a~~~~~~Gad~i~v~~~d~~~~~~~~---~-~~i~~i~~~~-----~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg 104 (244)
T 1vzw_A 34 PLEAALAWQRSGAEWLHLVDLDAAFGTGDN---R-ALIAEVAQAM-----DIKVELSGGIRDDDTLAAALATGCTRVNLG 104 (244)
T ss_dssp HHHHHHHHHHTTCSEEEEEEHHHHHTSCCC---H-HHHHHHHHHC-----SSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHcCCCEEEEecCchhhcCCCh---H-HHHHHHHHhc-----CCcEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 3444444433 3676665433322223211 1 4455555542 47899999999 788999999999999999
Q ss_pred ccccC
Q 023494 255 SAVFG 259 (281)
Q Consensus 255 SaIf~ 259 (281)
+..+.
T Consensus 105 ~~~l~ 109 (244)
T 1vzw_A 105 TAALE 109 (244)
T ss_dssp HHHHH
T ss_pred chHhh
Confidence 98774
|
| >1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.065 Score=46.76 Aligned_cols=166 Identities=16% Similarity=0.208 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh---------hHHHHHHHcCCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE---------QRVPDFIKAGAD 140 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~---------~~i~~~~~aGAd 140 (281)
++++.++.+.+.|.+.+-+ .|.+++..++. .+..+.++.-+.=|. .-++.+.+.|||
T Consensus 20 ~i~~l~~~a~~~~~~aVcv-------------~p~~v~~~~~~l~~~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~GAd 86 (220)
T 1ub3_A 20 EVAKAAEEALEYGFYGLCI-------------PPSYVAWVRARYPHAPFRLVTVVGFPLGYQEKEVKALEAALACARGAD 86 (220)
T ss_dssp HHHHHHHHHHHHTCSEEEC-------------CGGGHHHHHHHCTTCSSEEEEEESTTTCCSCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHHhCCCEEEE-------------CHHHHHHHHHHhCCCCceEEEEecCCCCCCchHHHHHHHHHHHHcCCC
Confidence 4555566666777776532 22233332221 122345555665543 235678899999
Q ss_pred EEEEccccc-----ccccHHHHHHHHHHc----CCcEEEEECCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCccc
Q 023494 141 IVSVHCEQS-----STIHLHRTLNQIKDL----GAKAGVVLNPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 141 ~Itvh~Ea~-----~~~~i~~~l~~ik~~----G~k~Glai~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~ 206 (281)
-|-+|..-. ..+...+.+..+++. ++|+-+....-| .+.+..... .+|+|=. .-||...
T Consensus 87 evd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~-~e~i~~a~~ia~eaGADfVKT---sTGf~~~--- 159 (220)
T 1ub3_A 87 EVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFS-PEEIARLAEAAIRGGADFLKT---STGFGPR--- 159 (220)
T ss_dssp EEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSC-HHHHHHHHHHHHHHTCSEEEC---CCSSSSC---
T ss_pred EEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCC-HHHHHHHHHHHHHhCCCEEEe---CCCCCCC---
Confidence 999986421 112233444444443 333333332223 233333222 3798842 3355311
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCc--EEEEcccccC
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN--ALVAGSAVFG 259 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD--~~VvGSaIf~ 259 (281)
..+++.++.+++.. +..++|-+.|||+ .+++..++++||+ ..-.|..|++
T Consensus 160 gat~~dv~~m~~~v---g~~v~VkaaGGirt~~~al~~i~aGa~RiG~S~g~~I~~ 212 (220)
T 1ub3_A 160 GASLEDVALLVRVA---QGRAQVKAAGGIRDRETALRMLKAGASRLGTSSGVALVA 212 (220)
T ss_dssp CCCHHHHHHHHHHH---TTSSEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHHC
T ss_pred CCCHHHHHHHHHhh---CCCCeEEEECCCCCHHHHHHHHHCCCcccchhHHHHHHH
Confidence 23455666666655 2357899999999 6788889999999 5555555664
|
| >3th6_A Triosephosphate isomerase; alpha/beta barrel, embryogenesis, glycolysis; 2.40A {Rhipicephalus microplus} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.19 Score=44.65 Aligned_cols=125 Identities=16% Similarity=0.226 Sum_probs=77.8
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHH-------------HHHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS-------------AIECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie-------------~~~~~l~~v- 188 (281)
.+++.++|++++.+. .| +++.+.+-++.+.++|+.+.+-+.- .++ .++..+..+
T Consensus 80 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleere~g~t~~vv~~Ql~~~l~~~~ 155 (249)
T 3th6_A 80 PGMIKDCGGQWVILGHSERRHVFKE--DDVLIGEKIKHALESGLNVIACIGE--LLEDREAGRTEEVCFRQIKHIASNVK 155 (249)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHTTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHcCCCEEEECchhhccccCC--CHHHHHHHHHHHHHCCCEEEEEcCC--cHHHHhcCCHHHHHHHHHHHHHhchh
Confidence 678899999999985 34 2455666678889999999887752 221 123333322
Q ss_pred C--EEEEEeecCCC---CCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEccc
Q 023494 189 D--LVLIMSVNPGF---GGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSA 256 (281)
Q Consensus 189 D--~IlvmsV~pG~---~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSa 256 (281)
+ -+ +..-+|=+ +|..-.|+..+ -.+.+|+.+.+. ..+++|.-.|+|+++|+.++. +.++|.+-+|++
T Consensus 156 ~~~~~-vIAYEPvWAIGTG~~At~e~aqevh~~IR~~l~~~~~~~~a~~vrIlYGGSV~~~N~~~l~~~~diDG~LVGgA 234 (249)
T 3th6_A 156 DWSKV-VIAYEPVWAIGTGKTATPDQAQEVHSKVRNWLSTNVSADVASKVRIQYGGSVNAGNCKELGRKPDIDGFLVGGA 234 (249)
T ss_dssp CGGGE-EEEECCTTTCCC---CCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEECGG
T ss_pred hhcCE-EEEECCcchhcCCCCCCHHHHHHHHHHHHHHHHHhhChhhcccccEEEcCccCHhHHHHHhcCCCCCEEEeehH
Confidence 1 11 22446633 35544444432 234445443221 113678899999999998764 688999999999
Q ss_pred ccCC
Q 023494 257 VFGA 260 (281)
Q Consensus 257 If~a 260 (281)
-.++
T Consensus 235 SL~~ 238 (249)
T 3th6_A 235 SLKP 238 (249)
T ss_dssp GGST
T ss_pred hhhH
Confidence 8765
|
| >2v5b_A Triosephosphate isomerase; TIM, unfolding, monotctim, glycosome, gluconeogenesis, lipid synthesis, monomeric mutant, glycolysis, pentose shunt; 2.00A {Trypanosoma cruzi} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.47 Score=41.97 Aligned_cols=130 Identities=21% Similarity=0.249 Sum_probs=82.5
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccCC
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVVD 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~vD 189 (281)
.+++.++|+++|.+. .| +++.+.+=++.+.++|+++.+=+.- .++. ++..+..++
T Consensus 74 ~~mL~d~G~~~ViiGHSERR~~f~E--td~~v~~Kv~~Al~~GL~pI~CvGE--tleereag~t~~vv~~Ql~~~l~~~~ 149 (244)
T 2v5b_A 74 LASLKDYGISWVVLGHSERRLYYGE--TNEIVAEKVAQACAAGFHVIVCVGE--TNEEREAGRTAAVVLTQLAAVAQKLS 149 (244)
T ss_dssp HHHHHHTTCCEEEECCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCCEEEeCchhhhhccCC--CHHHHHHHHHHHHHCCCeEEEEcCC--cHHHHhcCCHHHHHHHHHHHHHhcCC
Confidence 778999999999986 44 2455666688889999999887752 3221 223333321
Q ss_pred -----EEEEEeecC----CCCCCccchhHH-HHHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEE
Q 023494 190 -----LVLIMSVNP----GFGGQSFIESQV-KKISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVA 253 (281)
Q Consensus 190 -----~IlvmsV~p----G~~GQ~f~~~~l-~kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~Vv 253 (281)
-+ +..-+| |. |..-.|+.. +-.+.+|+.+.+. ..+++|.-.|+|+++|+.++. ...+|++-+
T Consensus 150 ~~~~~~~-vIAYEPvWAIGT-G~~Atpe~aqevh~~IR~~l~~~~~~~va~~vrIlYGGSV~~~N~~~l~~~~diDG~LV 227 (244)
T 2v5b_A 150 KEAWSRV-VIAYEPVWAIGT-GKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLV 227 (244)
T ss_dssp TGGGGGE-EEEECCHHHHSS-SCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCEEEECSCCCHHHHHHHHTSTTCCEEEE
T ss_pred HHHcCCE-EEEECCHHHhCC-CCCCCHHHHHHHHHHHHHHHHHhcChhhcCcccEEEcCCCCHhHHHHHhcCCCCCeeee
Confidence 12 224466 53 444444433 2233444433221 013678889999999999876 456999999
Q ss_pred cccccCCCCHHHHH
Q 023494 254 GSAVFGAKDYAEAI 267 (281)
Q Consensus 254 GSaIf~a~dp~~~~ 267 (281)
|++=.+ ++..+.+
T Consensus 228 GgASL~-~~F~~Ii 240 (244)
T 2v5b_A 228 GGASLK-PEFVEII 240 (244)
T ss_dssp SGGGSS-TTHHHHH
T ss_pred chHHHH-HHHHHHH
Confidence 999887 7766544
|
| >1o94_A Tmadh, trimethylamine dehydrogenase; electron transport, protein complex; HET: FMN ADP AMP; 2.0A {Methylophilus methylotrophus} SCOP: c.1.4.1 c.3.1.1 c.4.1.1 PDB: 1djn_A* 1o95_A* 2tmd_A* 1djq_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.093 Score=53.09 Aligned_cols=128 Identities=16% Similarity=0.143 Sum_probs=79.0
Q ss_pred HHHcCCCEEEEccccc--------c-----cc-----------cHHHHHHHHHHc---CCcEEEEECCC-------CC-H
Q 023494 134 FIKAGADIVSVHCEQS--------S-----TI-----------HLHRTLNQIKDL---GAKAGVVLNPA-------TS-L 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~-----~~-----------~i~~~l~~ik~~---G~k~Glai~p~-------t~-i 178 (281)
+.++|.|.|-+|.-.. + ++ -+.++++++|+. +..+++=++|. .. .
T Consensus 158 a~~aGfDgVEih~a~gyLl~qFlsp~~N~R~D~yGGs~enR~r~~~eiv~avr~~vg~~~pv~vrls~~~~~~~~G~~~~ 237 (729)
T 1o94_A 158 SRDAGFDIVYVYGAHSYLPLQFLNPYYNKRTDKYGGSLENRARFWLETLEKVKHAVGSDCAIATRFGVDTVYGPGQIEAE 237 (729)
T ss_dssp HHHTTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTTSEEEEEEEEECSSCTTSCCTT
T ss_pred HHHcCCCEEEEccccchHHHHhcCCccCCCcCcCCCCHHHHhHHHHHHHHHHHHHhCCCceEEEEEccccCcCCCCCCch
Confidence 4578999999997540 0 00 166788888875 45578777652 11 2
Q ss_pred HH---HHHhhc-cCCEEEEEeec----CCC-CCCccchh--HHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc
Q 023494 179 SA---IECVLD-VVDLVLIMSVN----PGF-GGQSFIES--QVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA 246 (281)
Q Consensus 179 e~---~~~~l~-~vD~IlvmsV~----pG~-~GQ~f~~~--~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a 246 (281)
+. +.+.++ .+|++-+.... .+. ..+.+.+. .++.++++|+. .++++.+-|||+ ++.+.++++.
T Consensus 238 ~~~~~~~~~l~~~~d~~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~-----~~~pvi~~G~i~~~~~a~~~l~~ 312 (729)
T 1o94_A 238 VDGQKFVEMADSLVDMWDITIGDIAEWGEDAGPSRFYQQGHTIPWVKLVKQV-----SKKPVLGVGRYTDPEKMIEIVTK 312 (729)
T ss_dssp THHHHHHHHHGGGCSEEEEEECCSTTGGGTSCCTTTCCTTTTHHHHHHHHTT-----CSSCEECCSCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhcCEEEEeeecccccccccCCccccCccccHHHHHHHHHH-----CCCEEEEeCCCCCHHHHHHHHHC
Confidence 12 333333 47887664321 000 11112221 13444555543 357898999995 9999999999
Q ss_pred C-CcEEEEcccccCCCCHHHH
Q 023494 247 G-ANALVAGSAVFGAKDYAEA 266 (281)
Q Consensus 247 G-AD~~VvGSaIf~a~dp~~~ 266 (281)
| ||.+.+|++++..+|.-..
T Consensus 313 g~aD~V~~gR~~l~~P~~~~~ 333 (729)
T 1o94_A 313 GYADIIGCARPSIADPFLPQK 333 (729)
T ss_dssp TSCSBEEESHHHHHCTTHHHH
T ss_pred CCCCEEEeCchhhcCchHHHH
Confidence 8 9999999999877765433
|
| >2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.28 Score=47.24 Aligned_cols=126 Identities=22% Similarity=0.350 Sum_probs=73.3
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCC----
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG---- 202 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~G---- 202 (281)
.+....+.++|+|.+.+..........-..++.+++. ++.+ ++=+.. ..+....+. .+|.|.+ ++-+|.-.
T Consensus 230 ~~~a~~l~~~gvd~lvvdta~G~~~~~L~~I~~l~~~~~vpv-i~k~v~-~~~~a~~l~-G~d~v~v-g~g~g~~~~~r~ 305 (486)
T 2cu0_A 230 IKRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADF-IVGNIA-NPKAVDDLT-FADAVKV-GIGPGSICTTRI 305 (486)
T ss_dssp HHHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEE-EEEEEC-CHHHHTTCT-TSSEEEE-CSSCSTTBCHHH
T ss_pred HHHHHHHHHhcCCceEEEecCCcEeehhhHHHHHHHHhCCcc-ccCCcC-CHHHHHHhh-CCCeEEE-eeeeccceeeeE
Confidence 4456778899999887754221112233455666654 4444 221222 334455555 8899877 33222200
Q ss_pred -CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 203 -QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 203 -Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
..+-...+.-|..+++...+. +++|..||||. ...+.+.+.+|||.+-+|+.+..
T Consensus 306 ~~~~g~~~~~~l~~~~~~~~~~--~vpVia~GGi~~~~di~kalalGA~~v~~g~~~~~ 362 (486)
T 2cu0_A 306 VAGVGVPQITAVAMVADRAQEY--GLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAG 362 (486)
T ss_dssp HTCCCCCHHHHHHHHHHHHHHH--TCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred EeecCcchHHHHHHHHHHHHHc--CCcEEecCCCCCHHHHHHHHHcCCCceeeChhhhc
Confidence 000001223344445444432 47898999999 66888888999999999999874
|
| >1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A* | Back alignment and structure |
|---|
Probab=95.23 E-value=0.079 Score=47.33 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=55.6
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeC-cccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc--CCCEEE-
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIVS- 143 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a--GAd~It- 143 (281)
|+....+..+.+.+.|+|+|.|.. | ..++.-..=.+++..++..++.|+-+ =+.+|. .++.+.++ |+++|-
T Consensus 23 ~~~~a~~~a~~~v~~GAdiIDIg~--g~~~v~~~ee~~rvv~~i~~~~~~pisI--DT~~~~-v~~aAl~a~~Ga~iINd 97 (262)
T 1f6y_A 23 DPAPVQEWARRQEEGGARALDLNV--GPAVQDKVSAMEWLVEVTQEVSNLTLCL--DSTNIK-AIEAGLKKCKNRAMINS 97 (262)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEBC--C----CHHHHHHHHHHHHHTTCCSEEEE--ECSCHH-HHHHHHHHCSSCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCcEEEECC--CCCCCChHHHHHHHHHHHHHhCCCeEEE--eCCCHH-HHHHHHhhCCCCCEEEE
Confidence 444445555667788999875432 2 11111111223344445444555544 334554 56677777 999885
Q ss_pred EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 144 vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+-.+ .+...+.+..++++|..+.+.-.
T Consensus 98 vs~~---~d~~~~~~~~~a~~~~~vvlmh~ 124 (262)
T 1f6y_A 98 TNAE---REKVEKLFPLAVEHGAALIGLTM 124 (262)
T ss_dssp ECSC---HHHHHHHHHHHHHTTCEEEEESC
T ss_pred CCCC---cccHHHHHHHHHHhCCcEEEEcC
Confidence 6554 23355788889999986655443
|
| >2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.23 E-value=0.045 Score=48.05 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=29.6
Q ss_pred CCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
++++.+.|||+ .+.+..+.++|||.+++|++++
T Consensus 74 ~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~ 107 (266)
T 2w6r_A 74 TLPIIASGGAGKMEHFLEAFLAGADKALAASVFH 107 (266)
T ss_dssp CSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC-
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHH
Confidence 57899999999 6889999999999999999988
|
| >3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=95.21 E-value=0.043 Score=50.26 Aligned_cols=126 Identities=14% Similarity=0.129 Sum_probs=81.0
Q ss_pred HHHHHHHcCCCEEE--Eccccc------ccccHHHHHHHHHHcCCcEEEE--ECC--------CCCHHHHHHhhc-----
Q 023494 130 RVPDFIKAGADIVS--VHCEQS------STIHLHRTLNQIKDLGAKAGVV--LNP--------ATSLSAIECVLD----- 186 (281)
Q Consensus 130 ~i~~~~~aGAd~It--vh~Ea~------~~~~i~~~l~~ik~~G~k~Gla--i~p--------~t~ie~~~~~l~----- 186 (281)
-++.+.+.|||.+. +|..-. ..+++.++.++++++|+-+-+. +.| .+..+.+.....
T Consensus 133 sVe~AvrlGADaV~~l~~i~~Gs~~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiAaEL 212 (307)
T 3fok_A 133 NVSSMVDRGVDFAKTLVRINLSDAGTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIAAGL 212 (307)
T ss_dssp CHHHHHHHTCCEEEEEEEECTTCTTHHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHHHTC
T ss_pred CHHHHHHCCCCEEEEEEEECCCChhHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHHHHh
Confidence 37788899999977 664321 1235678888899999988775 322 134444444322
Q ss_pred cCC----EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh----h---cHHHHHH-cCCcEEEEc
Q 023494 187 VVD----LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP----K---NAYKVIE-AGANALVAG 254 (281)
Q Consensus 187 ~vD----~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~----e---~i~~~~~-aGAD~~VvG 254 (281)
.+| +|=+ -.| +.+++ ..... ..++.+.||=.. + .+...++ +|+..+++|
T Consensus 213 GADs~~tivK~--~y~---------e~f~~------Vv~a~--~vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~vG 273 (307)
T 3fok_A 213 GNDSSYTWMKL--PVV---------EEMER------VMEST--TMPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTVG 273 (307)
T ss_dssp SSCCSSEEEEE--ECC---------TTHHH------HGGGC--SSCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEEC
T ss_pred CCCcCCCEEEe--CCc---------HHHHH------HHHhC--CCCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEeec
Confidence 156 5422 112 12222 22221 367778887663 2 4556677 799999999
Q ss_pred ccccC--CCCHHHHHHHHHHhc
Q 023494 255 SAVFG--AKDYAEAIKGIKTSK 274 (281)
Q Consensus 255 SaIf~--a~dp~~~~~~l~~~~ 274 (281)
+.||+ .+||.+.++.+...+
T Consensus 274 RNIfQ~~~~dp~~~v~al~~iV 295 (307)
T 3fok_A 274 RTLLYPQDGDVAAAVDTAARLV 295 (307)
T ss_dssp TTTSSCSSSCHHHHHHHHHHHH
T ss_pred hhhccCCCCCHHHHHHHHHHHH
Confidence 99999 899999999988754
|
| >2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.074 Score=49.85 Aligned_cols=97 Identities=15% Similarity=0.190 Sum_probs=62.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchh-HHHHHHHHHHHhhhcCCCCeE
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIES-QVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~-~l~kI~~lr~l~~~~~~~~~I 229 (281)
+...+.++.+++.|..+.+.+.+....+..+.+.+ .+|.+.+- ..+... ..+.+. ..+.|+++++.. +.++
T Consensus 142 ~~~~~~i~~~~~~g~~v~~~v~~~~~~e~a~~~~~agad~i~i~-~~~~~~-~~~~~~~~~~~i~~l~~~~-----~~pv 214 (393)
T 2qr6_A 142 ELLSERIAQVRDSGEIVAVRVSPQNVREIAPIVIKAGADLLVIQ-GTLISA-EHVNTGGEALNLKEFIGSL-----DVPV 214 (393)
T ss_dssp HHHHHHHHHHHHTTSCCEEEECTTTHHHHHHHHHHTTCSEEEEE-CSSCCS-SCCCC-----CHHHHHHHC-----SSCE
T ss_pred HHHHHHHHHHhhcCCeEEEEeCCccHHHHHHHHHHCCCCEEEEe-CCcccc-ccCCCcccHHHHHHHHHhc-----CCCE
Confidence 34567888999999999988887655554554433 57887543 222100 011121 344566666653 4678
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcc
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGS 255 (281)
.+-|..+++.+..+.++|||.+++|+
T Consensus 215 i~ggi~t~e~a~~~~~~Gad~i~vg~ 240 (393)
T 2qr6_A 215 IAGGVNDYTTALHMMRTGAVGIIVGG 240 (393)
T ss_dssp EEECCCSHHHHHHHHTTTCSEEEESC
T ss_pred EECCcCCHHHHHHHHHcCCCEEEECC
Confidence 77666779999999999999999986
|
| >2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.23 Score=53.07 Aligned_cols=192 Identities=15% Similarity=0.137 Sum_probs=112.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeC-ccccc---ccCCH-HHHHHcCcC-CCCCeeEEEEe-------cCh----hhHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDG-RFVPN---ITIGP-LVVDALRPV-TDLPLDVHLMI-------VEP----EQRVPD 133 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG-~fvpn---~~~G~-~~I~~ir~~-t~~~idaHLmv-------~dp----~~~i~~ 133 (281)
+..+..+.|.+.|+++.++.+.-| +|--. .+..+ +.++.+++. ++..+.+.+-- .-| ..+++.
T Consensus 574 dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~~~~p~e~l~~~~~~~~~~~~~~l~R~~n~vg~~~~~~~~~~~~i~~ 653 (1165)
T 2qf7_A 574 DIARIAGTYSHALPNLLSLECWGGATFDVSMRFLTEDPWERLALIREGAPNLLLQMLLRGANGVGYTNYPDNVVKYFVRQ 653 (1165)
T ss_dssp HHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHHCCCHHHHHHHHHHHCTTSEEEEEEETTTBTCSSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhcCCCHHHHHHHHHHHchhhHHHHHhccccccccccCCchhHHHHHHH
Confidence 444555677788888755554433 33211 13334 456666654 44444332211 112 246888
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC----------CCHHHHHHhhc-----cCCEEEEEeecC
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA----------TSLSAIECVLD-----VVDLVLIMSVNP 198 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~----------t~ie~~~~~l~-----~vD~IlvmsV~p 198 (281)
+.++|+|.+.+-.-....+.+...++.+++.|..+-.+++.. ++.+.+.++++ .+|.|.+-
T Consensus 654 a~~~g~d~irif~sl~~~~~~~~~i~~~~~~g~~v~~~i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~---- 729 (1165)
T 2qf7_A 654 AAKGGIDLFRVFDCLNWVENMRVSMDAIAEENKLCEAAICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVK---- 729 (1165)
T ss_dssp HHHHTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEE----
T ss_pred HHhcCcCEEEEEeeHHHHHHHHHHHHHHHhccceEEEEEEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEe----
Confidence 999999997775432234678899999999998887765322 34444444433 27877653
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEc----ccccCCCCHHHHHHHH
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAG----SAVFGAKDYAEAIKGI 270 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvG----SaIf~a~dp~~~~~~l 270 (281)
-..|-....++.+.++.+++.+ +.+|.+ |-|....|.-..+++|||.+=.- +.-.++.+.++.+..|
T Consensus 730 DT~G~~~P~~~~~lv~~l~~~~-----~~~i~~H~Hnd~GlAvAn~laAv~aGa~~vd~ti~GlGe~~Gn~~le~vv~~L 804 (1165)
T 2qf7_A 730 DMAGLLKPAAAKVLFKALREAT-----GLPIHFHTHDTSGIAAATVLAAVEAGVDAVDAAMDALSGNTSQPCLGSIVEAL 804 (1165)
T ss_dssp ETTCCCCHHHHHHHHHHHHHHC-----SSCEEEEECBTTSCHHHHHHHHHHTTCSEEEEBCGGGCSBTSCCBHHHHHHHH
T ss_pred CccCCcCHHHHHHHHHHHHHhc-----CCeEEEEECCCCCHHHHHHHHHHHhCCCEEEecccccCCCccchhHHHHHHHH
Confidence 2233323334456677777654 356776 88999999999999999976322 1123344555544444
Q ss_pred H
Q 023494 271 K 271 (281)
Q Consensus 271 ~ 271 (281)
+
T Consensus 805 ~ 805 (1165)
T 2qf7_A 805 S 805 (1165)
T ss_dssp T
T ss_pred H
Confidence 3
|
| >3k30_A Histamine dehydrogenase; 6-S-cysteinyl-FMN, ADP binding site, oxidoreductase; HET: FMN ADP; 2.70A {Pimelobacter simplex} | Back alignment and structure |
|---|
Probab=95.16 E-value=0.061 Score=53.95 Aligned_cols=126 Identities=21% Similarity=0.195 Sum_probs=78.7
Q ss_pred HHHcCCCEEEEccccc---------------------ccc----cHHHHHHHHHHc-C--CcEEEEECCCCC------HH
Q 023494 134 FIKAGADIVSVHCEQS---------------------STI----HLHRTLNQIKDL-G--AKAGVVLNPATS------LS 179 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~---------------------~~~----~i~~~l~~ik~~-G--~k~Glai~p~t~------ie 179 (281)
+.++|.|.|-+|.-.. +.+ -+.++++++|+. | ..+++=++|... .+
T Consensus 165 a~~aGfDgVeih~a~gy~L~~qFlsp~~N~R~D~yGGs~enR~r~~~ei~~avr~~~g~~~~v~~r~s~~~~~~~g~~~~ 244 (690)
T 3k30_A 165 SIEAGYDIVYVYGAHGYSGVHHFLSKRYNQRTDEYGGSLENRMRLLRELLEDTLDECAGRAAVACRITVEEEIDGGITRE 244 (690)
T ss_dssp HHHHTCSEEEEEECTTCSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHTTSSEEEEEEECCCCSTTSCCHH
T ss_pred HHHcCCCEEEEcccccchHHHHhCCCccCCCccccCCCHHHHHHHHHHHHHHHHHHhCCCceEEEEECccccCCCCCCHH
Confidence 4578999999986421 001 255788888875 4 468887876532 33
Q ss_pred HHHHh---h-ccCCEEEEEeec-------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC
Q 023494 180 AIECV---L-DVVDLVLIMSVN-------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG 247 (281)
Q Consensus 180 ~~~~~---l-~~vD~IlvmsV~-------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG 247 (281)
+..++ + +.+|++.+.... +.+.++.+. ++-++++|+. .++++..-|||+ ++.+.++++.|
T Consensus 245 ~~~~~~~~l~~~~d~~~v~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~-----~~~pvi~~G~i~~~~~a~~~l~~g 316 (690)
T 3k30_A 245 DIEGVLRELGELPDLWDFAMGSWEGDSVTSRFAPEGRQ---EEFVAGLKKL-----TTKPVVGVGRFTSPDAMVRQIKAG 316 (690)
T ss_dssp HHHHHHHHHTTSSSEEEEECSCHHHHTCCTTTCCTTTT---HHHHTTSGGG-----CSSCEEECSCCCCHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCEEEEecccccccCCCCccCCcccc---HHHHHHHHHH-----cCCeEEEeCCCCCHHHHHHHHHCC
Confidence 33222 2 247888664321 111121121 2333444433 357888899997 89999999998
Q ss_pred -CcEEEEcccccCCCCHHHHH
Q 023494 248 -ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 248 -AD~~VvGSaIf~a~dp~~~~ 267 (281)
+|.+.+|++++..+|.-..+
T Consensus 317 ~~d~v~~gR~~~~~P~~~~~~ 337 (690)
T 3k30_A 317 ILDLIGAARPSIADPFLPNKI 337 (690)
T ss_dssp SCSEEEESHHHHHCTTHHHHH
T ss_pred CcceEEEcHHhHhCccHHHHH
Confidence 99999999999777755433
|
| >4a3u_A NCR, NADH\:flavin oxidoreductase/NADH oxidase; HET: FMN; 1.70A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=95.12 E-value=0.096 Score=48.70 Aligned_cols=126 Identities=18% Similarity=0.238 Sum_probs=76.7
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-CC-cEEEEECCCCC---------H
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-GA-KAGVVLNPATS---------L 178 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G~-k~Glai~p~t~---------i 178 (281)
+.++|.|+|-+|+-.. + .+ -+.++++++|+. |- .+|+=+++... .
T Consensus 161 A~~AGFDgVEIH~ahGYLl~QFLSp~tN~RtDeYGGS~eNR~Rf~~Eii~avr~~vg~~~v~vRls~~~~~~g~~~~~~~ 240 (358)
T 4a3u_A 161 ALKAGFDGVQIHAANGYLIDEFIRDSTNHRHDEYGGAVENRIRLLKDVTERVIATIGKERTAVRLSPNGEIQGTVDSHPE 240 (358)
T ss_dssp HHHTTCSEEEEEECTTSHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECCSSCBTTBCCSSTH
T ss_pred HHHcCCCeEeecccCCCcHHhceecccCCeeCCCCCCHHHHHHHHHHHHHHHHHHcCccceEEEeccCcccCCCcccchH
Confidence 4679999999996421 0 00 155778888764 32 47777776422 2
Q ss_pred HHHHHh---hc--cCCEEEEEee-cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEE
Q 023494 179 SAIECV---LD--VVDLVLIMSV-NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 179 e~~~~~---l~--~vD~IlvmsV-~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~ 251 (281)
+.+.++ +. .+|++-+..- .++..+..+.+...++|+ +.. ..++.+.|+.+++.+.++++.| +|.+
T Consensus 241 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~a~~ik---~~~-----~~~v~~~g~~~~~~ae~~l~~G~aD~V 312 (358)
T 4a3u_A 241 QVFIPAAKMLSDLDIAFLGMREGAVDGTFGKTDQPKLSPEIR---KVF-----KPPLVLNQDYTFETAQAALDSGVADAI 312 (358)
T ss_dssp HHHHHHHHHHHHHTCSEEEEECCBTTCSSSBCSSCCCHHHHH---HHC-----CSCEEEESSCCHHHHHHHHHHTSCSEE
T ss_pred HHHHHHHHhhhccCccccccccccccCcccccccHHHHHHHH---Hhc-----CCcEEEeCCCCHHHHHHHHHcCCceEe
Confidence 222222 22 2566655322 122223333344444443 332 3567788888899999999999 8999
Q ss_pred EEcccccCCCCHHHHH
Q 023494 252 VAGSAVFGAKDYAEAI 267 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~ 267 (281)
.+|+.+...+|.-..+
T Consensus 313 ~~gR~~ladPdlp~k~ 328 (358)
T 4a3u_A 313 SFGRPFIGNPDLPRRF 328 (358)
T ss_dssp EESHHHHHCTTHHHHH
T ss_pred HhhHHHHhChhHHHHH
Confidence 9999999877765443
|
| >2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A* | Back alignment and structure |
|---|
Probab=95.12 E-value=0.15 Score=48.96 Aligned_cols=129 Identities=18% Similarity=0.183 Sum_probs=83.5
Q ss_pred HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCC---EE-EEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHH
Q 023494 104 PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGAD---IV-SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179 (281)
Q Consensus 104 ~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd---~I-tvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie 179 (281)
..+++.+++.++.|+.++ .||. -++...++|+| .| .+.. ++.+++...++++|..+.+. .+ .++
T Consensus 144 ~~~Vk~V~e~~dvPlsID---~dp~-vleaale~~~d~~pLIns~t~-----en~~~~~~la~~y~~~vV~~-~~--~l~ 211 (445)
T 2h9a_A 144 AKAVATAREVTDLPFILI---GTPE-QLAAALETEGANNPLLYAATA-----DNYEQMVELAKKYNVPLTVS-AK--GLD 211 (445)
T ss_dssp HHHHHHHHHHCCSCEEEE---SCHH-HHHHHHHHHGGGCCEEEEECT-----TTHHHHHHHHHHHTCCEEEE-CS--SHH
T ss_pred HHHHHHHHHhcCCCEEEE---CCHH-HHHHHHHhcCCCCCEEEECCH-----HHHHHHHHHHHHhCCeEEEE-cC--CHH
Confidence 445667777788999988 8876 56777888887 55 2332 35788899999999888773 33 676
Q ss_pred HHHHhhcc-----C-CEEEEEeecCCCCCCccchhHHHHHHHHHHHh---hhcCCCCeEEEecCCCh-----h--cHHHH
Q 023494 180 AIECVLDV-----V-DLVLIMSVNPGFGGQSFIESQVKKISDLRRMC---LEKGVNPWIEVDGGVGP-----K--NAYKV 243 (281)
Q Consensus 180 ~~~~~l~~-----v-D~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~---~~~~~~~~I~VDGGI~~-----e--~i~~~ 243 (281)
.++++... + |.| .+||.++ ..++++.++++|+.. ..+.+.+++ -+|++. + .+..+
T Consensus 212 ~l~~lv~~a~~~Gi~~Ii----LDP~~~~---~~~sl~~~~~IR~~al~~~d~~lg~P~--i~~vs~~d~~~ea~lA~~~ 282 (445)
T 2h9a_A 212 ALAELVQKITALGYKNLI----LDPQPEN---ISEGLFYQTQIRRLAIKKLFRPFGYPT--IAFALDENPYQAVMEASVY 282 (445)
T ss_dssp HHHHHHHHHHHTTCCCEE----EECCCSS---HHHHHHHHHHHHHHHHHSCCGGGCSCB--EEECCCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCcEE----EcCCchh---HHHHHHHHHHHHHhhhcCCCcccCCCe--eecCCchhHHHHHHHHHHH
Confidence 66665443 3 334 4898744 345677777777763 222234443 344432 2 33455
Q ss_pred HHcCCcEEEE
Q 023494 244 IEAGANALVA 253 (281)
Q Consensus 244 ~~aGAD~~Vv 253 (281)
...|||++++
T Consensus 283 ~~~GasIl~~ 292 (445)
T 2h9a_A 283 IAKYAGIIVL 292 (445)
T ss_dssp HHTTCSEEEE
T ss_pred HHcCCeEEEe
Confidence 8899999987
|
| >3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A | Back alignment and structure |
|---|
Probab=95.08 E-value=0.27 Score=45.52 Aligned_cols=174 Identities=17% Similarity=0.163 Sum_probs=99.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE------ec---Chh----hHHHHHHHc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM------IV---EPE----QRVPDFIKA 137 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm------v~---dp~----~~i~~~~~a 137 (281)
++++.+......|++-|=+ |. .||....... .++..+.+|+= .. .|. --++.+.+.
T Consensus 54 ~~K~lv~~~~~~~asaILl---D~------~~G~~a~~~~--~~~~GLii~~E~~G~~~~~~gr~p~~l~~~sve~a~~~ 122 (332)
T 3iv3_A 54 ELKVLVSEELTPYASSILL---DP------EYGLPAAQAR--DREAGLLLAYEKTGYDANTTSRLPDCLVDWSIKRLKEA 122 (332)
T ss_dssp HHHHHHHHHHGGGSSEEEE---CT------TTCHHHHHTS--CTTCEEEEECBCCCCCTTSSCCCCCBCTTCCHHHHHHT
T ss_pred HHHHHHHHHHhcCCcEEEE---ch------hhCHHHhccc--cCCCcEEEEeccCCCCcCCCCCCCccccccCHHHHHHc
Confidence 3444455555667776633 33 2566666532 24566777771 10 111 127889999
Q ss_pred CCCEEEEccccccc----------ccHHHHHHHHHHcCCcEEEEE--CCC-----CC----------HHH-HHHh--hc-
Q 023494 138 GADIVSVHCEQSST----------IHLHRTLNQIKDLGAKAGVVL--NPA-----TS----------LSA-IECV--LD- 186 (281)
Q Consensus 138 GAd~Itvh~Ea~~~----------~~i~~~l~~ik~~G~k~Glai--~p~-----t~----------ie~-~~~~--l~- 186 (281)
|||.|.+|.--.+. ..+.++.+++++.|+.+-+.+ .|. .+ +.. .+.. ++
T Consensus 123 GADAVk~lv~~g~d~~~e~~~~q~~~l~rv~~ec~~~GiPlllEil~y~~~~~~~~~~~~a~~~p~~V~~a~R~~~~~el 202 (332)
T 3iv3_A 123 GADAVKFLLYYDVDGDPQVNVQKQAYIERIGSECQAEDIPFFLEILTYDETISNNSSVEFAKVKVHKVNDAMKVFSAERF 202 (332)
T ss_dssp TCSEEEEEEEECTTSCHHHHHHHHHHHHHHHHHHHHHTCCEEEEEEECBTTBSCTTSHHHHTTHHHHHHHHHHHHTSGGG
T ss_pred CCCEEEEEEEcCCCchHHHHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCCCCCcchhhhccCHHHHHHHHHHHhhcCc
Confidence 99999999532111 246677888999999988743 332 11 111 1222 12
Q ss_pred cCCEEEE-EeecC----CCCC-Cc-cc-hhHHHHHHHHHHHhhhcCCCCe-EEEecCCChh----cHHHHHHcCC--cEE
Q 023494 187 VVDLVLI-MSVNP----GFGG-QS-FI-ESQVKKISDLRRMCLEKGVNPW-IEVDGGVGPK----NAYKVIEAGA--NAL 251 (281)
Q Consensus 187 ~vD~Ilv-msV~p----G~~G-Q~-f~-~~~l~kI~~lr~l~~~~~~~~~-I~VDGGI~~e----~i~~~~~aGA--D~~ 251 (281)
.+|++=+ +++++ ||+. +. +. .+..+..+ +.... -..+ |...||.+.+ ++....++|| ..+
T Consensus 203 GaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~---~~~~a--~~~P~v~lsgG~~~~~fl~~v~~A~~aGa~f~Gv 277 (332)
T 3iv3_A 203 GIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFR---EQEAS--TDLPYIYLSAGVSAELFQETLVFAHKAGAKFNGV 277 (332)
T ss_dssp CCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHH---HHHHT--CSSCEEEECTTCCHHHHHHHHHHHHHHTCCCCEE
T ss_pred CCcEEEEecCCChhhhcccccccccccHHHHHHHHH---HHHhc--CCCCEEEECCCCCHHHHHHHHHHHHHcCCCcceE
Confidence 3787643 23333 3432 11 11 12222233 33222 2356 4569999854 6667789999 999
Q ss_pred EEcccccCC
Q 023494 252 VAGSAVFGA 260 (281)
Q Consensus 252 VvGSaIf~a 260 (281)
.+|+++|+.
T Consensus 278 ~~GRnvwq~ 286 (332)
T 3iv3_A 278 LCGRATWAG 286 (332)
T ss_dssp EECHHHHTT
T ss_pred EeeHHHHHh
Confidence 999999985
|
| >1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.61 Score=42.21 Aligned_cols=188 Identities=12% Similarity=0.147 Sum_probs=115.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..=+-++..+.-.++.+++.+...| +-+-.|. |.+ +......++.+.+..+.|+-+||==..-..++..++++|.
T Consensus 21 ~AfNv~n~e~~~avl~AAe~~~sPvI-lq~s~~~~~y~g-~~~~~~~v~~~a~~~~VPValHlDHg~~~e~i~~ai~~GF 98 (286)
T 1gvf_A 21 PAFNIHNAETIQAILEVCSEMRSPVI-LAGTPGTFKHIA-LEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGV 98 (286)
T ss_dssp EEEECCSHHHHHHHHHHHHHHTCCCE-EEECTTHHHHSC-HHHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTC
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEE-EECChhHHhhcC-HHHHHHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHHHcCC
Confidence 33333344444556677777777765 5444442 221 1111234444444467999999976544567888999998
Q ss_pred CEEEEcccccc----cccHHHHHHHHHHcCCcEEEEE------------C----CCCCHHHHHHhhc--cCCEEEE--Ee
Q 023494 140 DIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGVVL------------N----PATSLSAIECVLD--VVDLVLI--MS 195 (281)
Q Consensus 140 d~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~Glai------------~----p~t~ie~~~~~l~--~vD~Ilv--ms 195 (281)
+.|-+=.-..+ ...-+++++.+++.|+-+-.-| . .-|..++..++.+ .+|.+.+ .+
T Consensus 99 tSVMiDgS~lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~~TgvD~LAvaiGt 178 (286)
T 1gvf_A 99 RSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGT 178 (286)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSC
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHHHHCCCEEEeecCc
Confidence 77766543222 1224577888888887652111 0 1277777888775 4897654 23
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcCCcEEEEccccc
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+|--+.|.+ .-.+++|+++++.. ++++..=| |+..+.++++++.|+.-+=+++.+.
T Consensus 179 ~HG~Y~~~p--~Ld~~~L~~I~~~~-----~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~ 236 (286)
T 1gvf_A 179 AHGLYSKTP--KIDFQRLAEIREVV-----DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELK 236 (286)
T ss_dssp CSSCCSSCC--CCCHHHHHHHHHHC-----CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred cccCcCCCC--ccCHHHHHHHHHhc-----CCCEEEECCCCCCHHHHHHHHHCCCeEEEEChHHH
Confidence 341122321 12256666666664 37888888 6778899999999999999998873
|
| >4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D* | Back alignment and structure |
|---|
Probab=95.00 E-value=0.17 Score=46.71 Aligned_cols=170 Identities=18% Similarity=0.154 Sum_probs=92.8
Q ss_pred CHHHHHHHHH-HcCCCeEEEEee-eCcccccc-c----CCHHHHHHcCcCCCCCeeEE---EEecChhhHHHHHHHcCCC
Q 023494 71 KLGEQVKAVE-LAGCDWIHVDVM-DGRFVPNI-T----IGPLVVDALRPVTDLPLDVH---LMIVEPEQRVPDFIKAGAD 140 (281)
Q Consensus 71 ~l~~~l~~l~-~~G~d~iHiDIm-DG~fvpn~-~----~G~~~I~~ir~~t~~~idaH---Lmv~dp~~~i~~~~~aGAd 140 (281)
+..+..+.+. +.|+|+| ||- ++ .-|+. . .-.+.++.+++.++.|+.++ =-+.||. .++.+.++|++
T Consensus 81 ~~~~~A~~~v~~~GAdiI--DIg~eS-trP~~~~vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~e-V~eaAleagag 156 (323)
T 4djd_D 81 EPGRWAQKCVAEYGADLI--YLKLDG-ADPEGANHSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHE-VLEAVAEAAAG 156 (323)
T ss_dssp CHHHHHHHHHHTTCCSEE--EEECGG-GCTTTTCCCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHH-HHHHHHHHTTT
T ss_pred hHHHHHHHHHHHcCCCEE--EEcCcc-CCCCCCCCCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHH-HHHHHHHhcCC
Confidence 4556666666 8899986 663 32 22431 1 12334666666566665542 0023443 56777888876
Q ss_pred ---EE-EEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc---c--C--CEEEEEeecCCCCC-Cccchh
Q 023494 141 ---IV-SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD---V--V--DLVLIMSVNPGFGG-QSFIES 208 (281)
Q Consensus 141 ---~I-tvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~---~--v--D~IlvmsV~pG~~G-Q~f~~~ 208 (281)
.| .+..+ ...+.+..++++|..+.+.- |. .++.++++.. . + +-|++ +||++. -+-..+
T Consensus 157 ~~~lINsv~~~-----~~~~m~~laa~~g~~vVlmh-~~-d~~~~~~l~~~a~~~GI~~e~IIl---DPg~g~fgk~~e~ 226 (323)
T 4djd_D 157 ENLLLGNAEQE-----NYKSLTAACMVHKHNIIARS-PL-DINICKQLNILINEMNLPLDHIVI---DPSIGGLGYGIEY 226 (323)
T ss_dssp SCCEEEEEBTT-----BCHHHHHHHHHHTCEEEEEC-SS-CHHHHHHHHHHHHTTTCCGGGEEE---ECCCCCTTTTHHH
T ss_pred CCCeEEECCcc-----cHHHHHHHHHHhCCeEEEEc-cc-hHHHHHHHHHHHHHcCCCHHHEEE---eCCCccccCCHHH
Confidence 22 22222 24578888899998777643 32 3444444432 2 3 33443 898851 112345
Q ss_pred HHHHHHHHHHH-hh-hcCCCCeEEEe--------------------------cCCChh--cHHHHHHcCCcEEEEc
Q 023494 209 QVKKISDLRRM-CL-EKGVNPWIEVD--------------------------GGVGPK--NAYKVIEAGANALVAG 254 (281)
Q Consensus 209 ~l~kI~~lr~l-~~-~~~~~~~I~VD--------------------------GGI~~e--~i~~~~~aGAD~~VvG 254 (281)
.++.++++|.. +. .+.+++++-+. -|+-.| +...++.+|+|++|+-
T Consensus 227 ~l~~l~~ir~~al~~~~~lg~PvL~GvSrksf~~ke~~~~~~~~~~~g~~~~~~~~~E~~~a~~~~~~~~~i~v~~ 302 (323)
T 4djd_D 227 SFSIMERIRLGALQGDKMLSMPVICTVGYEAWRAKEASAPVSEYPGWGKETERGILWEAVTATALLQAGAHILLMR 302 (323)
T ss_dssp HHHHHHHHHHHHHHTCGGGCSCBEEEHHHHHHTSHHHHCCTTTCGGGCCHHHHHHHHHHHHHHHHHTTTCSEEEEC
T ss_pred HHHHHHHHHHHhhcccccCCCCEEEecchhhhhhccccccccccccccccchhhHHHHHHHHHHHHHhcCCEEEEc
Confidence 66777777763 11 12345666442 111122 3456788999999974
|
| >1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.35 Score=42.36 Aligned_cols=118 Identities=11% Similarity=0.153 Sum_probs=75.1
Q ss_pred CceEeEEEec-cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCC-CCCeeEEEEecC------
Q 023494 57 DIIVSPSILS-ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVT-DLPLDVHLMIVE------ 126 (281)
Q Consensus 57 ~~~i~pSila-~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t-~~~idaHLmv~d------ 126 (281)
..+|+.+|.. -+...+.++++.+.+.|+|.+++.+ |- ..+. ..=.+.++.+|+.+ ++|+.+++-...
T Consensus 3 ~p~Icvpi~~~~~~~e~~~~~~~~~~~~~D~vElRv-D~--l~~~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~ 79 (238)
T 1sfl_A 3 HVEVVATITPQLSIEETLIQKINHRIDAIDVLELRI-DQ--FENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQ 79 (238)
T ss_dssp CCEEEEEECCCC---CHHHHHHHHTTTTCSEEEEEC-TT--STTCCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBC
T ss_pred CCeEEEEecCCCCHHHHHHHHHHhhhcCCCEEEEEe-cc--cccCCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCC
Confidence 3578999998 8888888888888888999999873 21 1211 11123456678875 689988886532
Q ss_pred --hhhHHHH---HHHc-CCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECC--CCC
Q 023494 127 --PEQRVPD---FIKA-GADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNP--ATS 177 (281)
Q Consensus 127 --p~~~i~~---~~~a-GAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p--~t~ 177 (281)
...|++. +.+. ++|+|-+-.... +.+...++++.+++.|.|+.+..+. .||
T Consensus 80 ~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~~~~~~~~l~~~~~~~~~kvI~S~Hdf~~tp 139 (238)
T 1sfl_A 80 FTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVIISHHNFESTP 139 (238)
T ss_dssp CCHHHHHHHHHHGGGCTTCCEEEEECCTTSCHHHHHHHHHHHHHTTCEEEEEEEESSCCC
T ss_pred CCHHHHHHHHHHHHHhCCCCEEEEEccCCCChHHHHHHHHHHHhcCCEEEEEecCCCCCc
Confidence 2345544 3455 699999987630 1234667888888999999998652 455
|
| >3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=94.91 E-value=0.16 Score=46.03 Aligned_cols=114 Identities=17% Similarity=0.269 Sum_probs=67.3
Q ss_pred HHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHc-C---CcEEEEECCCCCHHHHHHh---hc--cCCEEEEEee
Q 023494 131 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL-G---AKAGVVLNPATSLSAIECV---LD--VVDLVLIMSV 196 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~-G---~k~Glai~p~t~ie~~~~~---l~--~vD~IlvmsV 196 (281)
++.+.+.|||-|-++..-. ..+.+.+.++.+++. + +|+.+...--|+ +.+... .. .+|+|= |
T Consensus 132 a~~Ai~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~-eei~~A~~ia~eaGADfVK--T- 207 (288)
T 3oa3_A 132 AKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTA-DEIIAGCVLSSLAGADYVK--T- 207 (288)
T ss_dssp HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCH-HHHHHHHHHHHHTTCSEEE--C-
T ss_pred HHHHHHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCH-HHHHHHHHHHHHcCCCEEE--c-
Confidence 5567899999999886531 112355556666654 2 233332221122 322222 11 379884 2
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
..||+.. ..+++.++-+++.++..+..+.|-+.|||+ .+++..++++||+-+
T Consensus 208 STGf~~~---GAT~edv~lmr~~v~~~g~~v~VKAAGGIrt~edAl~mi~aGA~Ri 260 (288)
T 3oa3_A 208 STGFNGP---GASIENVSLMSAVCDSLQSETRVKASGGIRTIEDCVKMVRAGAERL 260 (288)
T ss_dssp CCSSSSC---CCCHHHHHHHHHHHHHSSSCCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCCCCC---CCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 2566522 234555566666654323468899999999 789999999999954
|
| >3r79_A Uncharacterized protein; PSI-biology, structural genomics, NEW YORK structural genomi research consortium, TIM barrel; HET: PLP; 1.90A {Agrobacterium tumefaciens} | Back alignment and structure |
|---|
Probab=94.90 E-value=0.53 Score=41.52 Aligned_cols=168 Identities=16% Similarity=0.143 Sum_probs=90.8
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
+.++.+.++|++++=+ .++ ..+.+..+.+... ..++..|+.=.-+.+.++.+++. +|++..-. +.+.
T Consensus 43 ~~i~~~~~~G~~~fge-----n~v---qEa~~kr~~~~~~-~~~i~wh~iG~lq~nk~~~~v~~-~~~i~sVd---s~~~ 109 (244)
T 3r79_A 43 EAIQPVIDAGQRVFGE-----NRV---QEAQGKWPALKEK-TSDIELHLIGPLQSNKAADAVAL-FDVVESID---REKI 109 (244)
T ss_dssp HHHHHHHHTTCCEEEE-----SCH---HHHHHHHHHHHHH-STTCEEEECSCCCGGGHHHHHHH-CSEEEEEC---SHHH
T ss_pred HHHHHHHHCCCCEEEE-----eeH---HHHHHHHHhcccc-CCCeEEEecCCCCHHHHHHHHHH-CCEEEeeC---CHHH
Confidence 4567888899997622 222 2333333333210 01345555332223345555532 46643221 1334
Q ss_pred HHHHHHHHHHcCCcEEE--EECCCC-------CHHHHHHhh------ccCCEEEEEeecCCCCCCccchhHHHHHHHHHH
Q 023494 154 LHRTLNQIKDLGAKAGV--VLNPAT-------SLSAIECVL------DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRR 218 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Gl--ai~p~t-------~ie~~~~~l------~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~ 218 (281)
+.++-+.+.+.|..+-+ -+|.++ +.+.+.+++ +.+.+..+||..|-... + ...+.+++++++
T Consensus 110 a~~L~~~a~~~g~~~~V~LqVdtG~e~~R~Gv~~ee~~~l~~~i~~l~~L~l~GlmTh~a~~dd-~--~~~f~~l~~l~~ 186 (244)
T 3r79_A 110 ARALSEECARQGRSLRFYVQVNTGLEPQKAGIDPRETVAFVAFCRDELKLPVEGLMCIPPAEEN-P--GPHFALLAKLAG 186 (244)
T ss_dssp HHHHHHHHHHHTCCCEEEEEBCTTCCTTSCSBCHHHHHHHHHHHHHTSCCCCCEEECCCCTTSC-S--HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCceEEEEEECCCCcCCCCCCHHHHHHHHHHHHcCCCCEEEEEEecCCCCCC-H--HHHHHHHHHHHH
Confidence 55555666677765555 455431 123333332 34677788886442222 1 145666666665
Q ss_pred HhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHH
Q 023494 219 MCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~ 264 (281)
.++ +. .+-+|.+.+ +...++.|++.+=+|++||+..++.
T Consensus 187 ~l~-----~~-~lSmGmS~d-~~~Ai~~G~t~vRvGtaIfg~r~~~ 225 (244)
T 3r79_A 187 QCG-----LE-KLSMGMSGD-FETAVEFGATSVRVGSAIFGSRAEN 225 (244)
T ss_dssp HHT-----CC-EEECCCTTT-HHHHHHTTCSEEEECHHHHCCHHHH
T ss_pred hCC-----CC-EEEeecchh-HHHHHHcCCCEEEeeHHHhCCCchh
Confidence 542 23 478898874 4556889999999999999865443
|
| >3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.62 Score=43.54 Aligned_cols=185 Identities=14% Similarity=0.094 Sum_probs=107.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccC-CHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHH----cCCCEEEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITI-GPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIK----AGADIVSV 144 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~-G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~----aGAd~Itv 144 (281)
+-.+.++.|.+.|+++|++ | | |..+- ..+.++++++. .+..+-+..- .++. -++.+.+ +|++.|++
T Consensus 35 ~Kl~ia~~L~~~Gv~~IE~----g-~-p~~~~~d~e~v~~i~~~~~~~~i~~l~r-~~~~-di~~a~~al~~ag~~~v~i 106 (370)
T 3rmj_A 35 EKIRVARQLEKLGVDIIEA----G-F-AAASPGDFEAVNAIAKTITKSTVCSLSR-AIER-DIRQAGEAVAPAPKKRIHT 106 (370)
T ss_dssp HHHHHHHHHHHHTCSEEEE----E-E-GGGCHHHHHHHHHHHTTCSSSEEEEEEE-SSHH-HHHHHHHHHTTSSSEEEEE
T ss_pred HHHHHHHHHHHcCCCEEEE----e-C-CCCCHHHHHHHHHHHHhCCCCeEEEEec-CCHH-HHHHHHHHHhhCCCCEEEE
Confidence 3335556777889999888 3 2 32111 12456665543 3344444322 2332 3455555 89999888
Q ss_pred cccccccc---------------cHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhcc-----CCEEEEEeecCCCCC
Q 023494 145 HCEQSSTI---------------HLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLDV-----VDLVLIMSVNPGFGG 202 (281)
Q Consensus 145 h~Ea~~~~---------------~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~~-----vD~IlvmsV~pG~~G 202 (281)
..-.. .. .+.+.++.+|++|..+.+.. ...++.+.+.++.+. +|.|.+- -..|
T Consensus 107 f~~~S-d~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~~~~ed~~r~~~~~~~~~~~~~~~~Ga~~i~l~----DT~G 181 (370)
T 3rmj_A 107 FIATS-PIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVEFSCEDALRSEIDFLAEICGAVIEAGATTINIP----DTVG 181 (370)
T ss_dssp EEECS-HHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEEEEEETGGGSCHHHHHHHHHHHHHHTCCEEEEE----CSSS
T ss_pred EecCc-HHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEecCCCCccCHHHHHHHHHHHHHcCCCEEEec----CccC
Confidence 75432 11 23457778889998876654 234666666665442 6777652 2234
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc------CCCCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF------GAKDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf------~a~dp~~~~~~l~ 271 (281)
-....++.+.++.+++.++.. .+.+|++ |-|.-..|.-..+++||+.|= ++|. ++.+.++.+..|+
T Consensus 182 ~~~P~~~~~lv~~l~~~~~~~-~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd--~tv~GlGeraGN~~lE~vv~~L~ 257 (370)
T 3rmj_A 182 YSIPYKTEEFFRELIAKTPNG-GKVVWSAHCHNDLGLAVANSLAALKGGARQVE--CTVNGLGERAGNASVEEIVMALK 257 (370)
T ss_dssp CCCHHHHHHHHHHHHHHSTTG-GGSEEEEECBCTTSCHHHHHHHHHHTTCCEEE--EBGGGCSSTTCBCBHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHhCCCc-CceEEEEEeCCCCChHHHHHHHHHHhCCCEEE--EeccccCcccccccHHHHHHHHH
Confidence 333344566677777765421 0156777 889998899999999999763 3332 2345565555554
|
| >3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.21 Score=43.05 Aligned_cols=123 Identities=9% Similarity=0.038 Sum_probs=82.2
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEe-c-Ch---h
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMI-V-EP---E 128 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv-~-dp---~ 128 (281)
.++|+-+.++.--..+++.++.+.+.|.+.+++.. .++ | ....+..++++|+. .++.+.++--. . .. .
T Consensus 17 ~~klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~--~~~-~-~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~ 92 (257)
T 3lmz_A 17 PFHLGMAGYTFVNFDLDTTLKTLERLDIHYLCIKD--FHL-P-LNSTDEQIRAFHDKCAAHKVTGYAVGPIYMKSEEEID 92 (257)
T ss_dssp SSEEEECGGGGTTSCHHHHHHHHHHTTCCEEEECT--TTS-C-TTCCHHHHHHHHHHHHHTTCEEEEEEEEEECSHHHHH
T ss_pred ceEEEEEEEeecCCCHHHHHHHHHHhCCCEEEEec--ccC-C-CCCCHHHHHHHHHHHHHcCCeEEEEeccccCCHHHHH
Confidence 35788888887667899999999999999988742 222 2 23345555555442 45554432221 1 11 2
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC-CC----CCHHHHHHhhc
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PA----TSLSAIECVLD 186 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~-p~----t~ie~~~~~l~ 186 (281)
+.++.+.+.|+..|.+|.. .+.+.++.+.++++|+++++--. |. ...+.+..+++
T Consensus 93 ~~i~~A~~lGa~~v~~~p~---~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~ll~ 152 (257)
T 3lmz_A 93 RAFDYAKRVGVKLIVGVPN---YELLPYVDKKVKEYDFHYAIHLHGPDIKTYPDATDVWVHTK 152 (257)
T ss_dssp HHHHHHHHHTCSEEEEEEC---GGGHHHHHHHHHHHTCEEEEECCCTTCSSSCSHHHHHHHHT
T ss_pred HHHHHHHHhCCCEEEecCC---HHHHHHHHHHHHHcCCEEEEecCCCcccccCCHHHHHHHHH
Confidence 3566778899999999864 35688999999999999988655 32 23455556655
|
| >3tjl_A NADPH dehydrogenase; OLD yellow enzyme, flavin mononucleotide, TIM barrel, NADPH oxidoreductase, enone reductase; HET: FMN; 1.50A {Scheffersomyces stipitis cbs 6054} PDB: 3upw_A* 4df2_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.15 Score=48.39 Aligned_cols=127 Identities=13% Similarity=0.252 Sum_probs=74.9
Q ss_pred HHHcCCCEEEEccccc--------c-----c-----------ccHHHHHHHHHHc-CC-cEEEEECCCCC----------
Q 023494 134 FIKAGADIVSVHCEQS--------S-----T-----------IHLHRTLNQIKDL-GA-KAGVVLNPATS---------- 177 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~-----~-----------~~i~~~l~~ik~~-G~-k~Glai~p~t~---------- 177 (281)
+.++|.|+|-+|.-.. + + .-+.++++++|+. |. .+|+=++|...
T Consensus 177 a~~aGfdgveih~~~GYLl~QFLsp~~N~r~D~YGGs~enr~r~~~ei~~av~~~~~~~~v~~r~~~~~~~~g~~~~~d~ 256 (407)
T 3tjl_A 177 AMDAGFDYIELHAAHGYLLDQFLQPCTNQRTDEYGGSIENRARLILELIDHLSTIVGADKIGIRISPWATFQNMKAHKDT 256 (407)
T ss_dssp HHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCCGGGSS
T ss_pred HHHhCCCeEEECCccchHHHHhcCccccccCCcCCCChhhChHHHHHHHHHHHHHhCCCeEEEEECcccccCCCcccccc
Confidence 4678999999997541 0 0 0155777777764 42 68888887431
Q ss_pred ---HHH----HHHh---hc-c--CCEEEEEeecCCCCCCccchhH--HHHHHHHHHHhhhcCCCCeEEEecCCChhc-HH
Q 023494 178 ---LSA----IECV---LD-V--VDLVLIMSVNPGFGGQSFIESQ--VKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AY 241 (281)
Q Consensus 178 ---ie~----~~~~---l~-~--vD~IlvmsV~pG~~GQ~f~~~~--l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~-i~ 241 (281)
.+. ++.+ .+ . +|||-+. ++.+.++...+.. .+.++.+++.. +.++.+-|||+.+. +.
T Consensus 257 ~~~~~~~~~l~~~L~~~~~~G~~l~ylhv~--~~~~~~~~~~~~~~~~~~~~~ir~~~-----~~PvI~~Ggi~~~~dA~ 329 (407)
T 3tjl_A 257 VHPLTTFSYLVHELQQRADKGQGIAYISVV--EPRVSGNVDVSEEDQAGDNEFVSKIW-----KGVILKAGNYSYDAPEF 329 (407)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCCCSEEEEE--CTTEETTEECCGGGCCCCSHHHHHHC-----CSEEEEESCGGGGTTTT
T ss_pred cccHHHHHHHHHHHHhHhhcCCceeEEEEE--ccccCCCCcCCccchhHHHHHHHHHh-----CCCEEecCCCCCHHHHH
Confidence 222 2222 11 2 8888765 2332222111100 01234445443 25788899999655 65
Q ss_pred HHHHc----CCcEEEEcccccCCCCHHHHH
Q 023494 242 KVIEA----GANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 242 ~~~~a----GAD~~VvGSaIf~a~dp~~~~ 267 (281)
++++. ++|.+.+|++.+..+|..+.+
T Consensus 330 ~~i~~~~~g~aDlVa~GR~~iaNPdL~~ri 359 (407)
T 3tjl_A 330 KTLKEDIADKRTLVGFSRYFTSNPNLVWKL 359 (407)
T ss_dssp HHHHHHHTTSSEEEECSHHHHHCTTHHHHH
T ss_pred HHHHhhccCCCeEEEeChhhhhCchHHHHH
Confidence 55554 599999999999888865444
|
| >2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.7 Score=41.35 Aligned_cols=98 Identities=14% Similarity=0.229 Sum_probs=60.1
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccc-cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc--CCCEEE-
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVP-NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIVS- 143 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp-n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a--GAd~It- 143 (281)
|.....+..+.+.+.|+|+|-|- =+.... ...-=..+|+.+++.++.|+-+| +.+|. .++.+.++ |+++|-
T Consensus 32 ~~~~a~~~a~~~v~~GAdiIDIg--~~s~~~eE~~rv~~vi~~l~~~~~~pisID--T~~~~-v~~aal~a~~Ga~iINd 106 (271)
T 2yci_X 32 DPRPIQEWARRQAEKGAHYLDVN--TGPTADDPVRVMEWLVKTIQEVVDLPCCLD--STNPD-AIEAGLKVHRGHAMINS 106 (271)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEE--CCSCSSCHHHHHHHHHHHHHHHCCCCEEEE--CSCHH-HHHHHHHHCCSCCEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEc--CCcCchhHHHHHHHHHHHHHHhCCCeEEEe--CCCHH-HHHHHHHhCCCCCEEEE
Confidence 44455566667778999987553 211011 01112334666666566776653 44655 56777888 999996
Q ss_pred EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 144 vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+..+ .+.+.+.+..++++|..+.+.-.
T Consensus 107 vs~~---~d~~~~~~~~~a~~~~~vv~m~~ 133 (271)
T 2yci_X 107 TSAD---QWKMDIFFPMAKKYEAAIIGLTM 133 (271)
T ss_dssp ECSC---HHHHHHHHHHHHHHTCEEEEESC
T ss_pred CCCC---ccccHHHHHHHHHcCCCEEEEec
Confidence 6665 13346788889999986665543
|
| >3rlg_A Sphingomyelin phosphodiesterase D lisictox-alphai; TIM beta/alpha-barrel, PLC-like phosphodiesterase, inactive H12A phospholipase D; HET: PGE; 1.60A {Loxosceles intermedia} PDB: 3rlh_A* | Back alignment and structure |
|---|
Probab=94.66 E-value=0.82 Score=41.65 Aligned_cols=188 Identities=10% Similarity=0.058 Sum_probs=109.5
Q ss_pred cCHHHHHHHHHHcCCCeEEEEee---eCc------ccccccC---C-----HHHHHHcCcCC--C--------CCeeEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVM---DGR------FVPNITI---G-----PLVVDALRPVT--D--------LPLDVHL 122 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDIm---DG~------fvpn~~~---G-----~~~I~~ir~~t--~--------~~idaHL 122 (281)
.|.-++++.+.+.|+++|++||. ||. -+|.-.+ + .+.++.||+.| + ..+..||
T Consensus 36 vNTl~~~~~a~~~GAn~IE~DV~~~~dg~~v~~hhg~pcdc~r~C~~~~~~~~~l~~lr~~ttpg~~k~~~~l~lv~~Dl 115 (302)
T 3rlg_A 36 VNAIGQIDEFVNLGANSIETDVSFDDNANPEYTYHGIPCDCGRNCKKYENFNDFLKGLRSATTPGNSKYQEKLVLVVFDL 115 (302)
T ss_dssp CCSHHHHHHHHHTTCSEEEEEECBCTTSCBCBCCCCSSCCTTCCSCCCCBHHHHHHHHHHHHSTTSTTCCTTCCEEEEEE
T ss_pred hhhHHHHHHHHHcCCCEEEEEEEECCCCCEEEEECCCCcchhccCCCCccHHHHHHHHHHhcCCCCCccccceEEEEEEc
Confidence 56667899999999999999975 331 0232111 1 56788887752 1 3577899
Q ss_pred EecChh---------hHHHH----HHH---cCC-CEEEEccccc-ccccHHHHHHHHHHcC-----CcEEEEECCCCCHH
Q 023494 123 MIVEPE---------QRVPD----FIK---AGA-DIVSVHCEQS-STIHLHRTLNQIKDLG-----AKAGVVLNPATSLS 179 (281)
Q Consensus 123 mv~dp~---------~~i~~----~~~---aGA-d~Itvh~Ea~-~~~~i~~~l~~ik~~G-----~k~Glai~p~t~ie 179 (281)
++.+-. ...+. +.. .|+ -.|.+..... ..+-+..+.+.+++.| -++|..+.-+.+++
T Consensus 116 K~~~l~~~~~~~aG~~la~kLl~~~w~~g~~~~ra~vilsi~~~~~~~~l~gf~~~l~~~g~~~LldkvG~Dfs~n~dl~ 195 (302)
T 3rlg_A 116 KTGSLYDNQANDAGKKLAKNLLQHYWNNGNNGGRAYIVLSIPDLNHYPLIKGFKDQLTKDGHPELMDKVGHDFSGNDDIG 195 (302)
T ss_dssp CGGGSCGGGHHHHHHHHHHHHHHHTSGGGSSCCCCEEEEEESCGGGTHHHHHHHHHHHHTTCGGGGGGEEEEECSCCCHH
T ss_pred CCCCCCHHHHHHhHHHHHHHHHHHHHhcCCCCceeEEEEecCcchHHHHHHHHHHHHhhcCHHHHhhhcCccccCCCCHH
Confidence 985441 11222 223 233 3555554421 1223555555666777 37899999888898
Q ss_pred HHHHhhcc--C-CEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC-CCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 180 AIECVLDV--V-DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 180 ~~~~~l~~--v-D~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~-~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.+.+.+.. + +.+..- -|++.=. ....+++++..+..+..+ +-.++. -=-|| ++.++.+.+.|+|.++
T Consensus 196 ~i~~~~~~~Gi~~h~wqs---DGItnC~--~r~~~rl~~ai~~RDs~~~~i~~V~-vWTVNd~~~m~~l~~~GVDGII-- 267 (302)
T 3rlg_A 196 DVGKAYKKAGITGHIWQS---DGITNCL--PRGLSRVNAAVANRDSANGFINKVY-YWTVDKRSTTRDALDAGVDGIM-- 267 (302)
T ss_dssp HHHHHHHHTTCCSCBEEE---EECCTTS--CCCSHHHHHHHHHHTSTTCCCSEEE-EECCCSHHHHHHHHHTTCSEEE--
T ss_pred HHHHHHHhcCCcCcEEec---CCcccce--eccHHHHHHHHHhccCCCCceEEEE-EEeCCCHHHHHHHHHcCCCEEE--
Confidence 88887764 2 334331 1333322 333466666665554322 112332 23355 7899999999999987
Q ss_pred ccccCCCCHHHHHHHH
Q 023494 255 SAVFGAKDYAEAIKGI 270 (281)
Q Consensus 255 SaIf~a~dp~~~~~~l 270 (281)
.+.|....+.+
T Consensus 268 -----TD~Pd~l~~~l 278 (302)
T 3rlg_A 268 -----TNYPDVITDVL 278 (302)
T ss_dssp -----ESCHHHHHHHH
T ss_pred -----CCCHHHHHHHH
Confidence 35565444333
|
| >3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=94.62 E-value=0.46 Score=44.24 Aligned_cols=111 Identities=14% Similarity=0.262 Sum_probs=69.2
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcC-CcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G-~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+...+.++|.=. .+|... +.+...+.++.+|+.+ ..+|+.+..++ .+.++.+++ .+|+|.+ +.+. | ...
T Consensus 61 lA~avA~~GGlg-ii~~~~-s~e~~~~~I~~vk~~~~~pvga~ig~~~-~e~a~~l~eaGad~I~l---d~a~-G--~~~ 131 (361)
T 3khj_A 61 MAVGMARLGGIG-IIHKNM-DMESQVNEVLKVKNSGGLRVGAAIGVNE-IERAKLLVEAGVDVIVL---DSAH-G--HSL 131 (361)
T ss_dssp HHHHHHHTTCEE-EECSSS-CHHHHHHHHHHHHHTTCCCCEEEECTTC-HHHHHHHHHTTCSEEEE---CCSC-C--SBH
T ss_pred HHHHHHHcCCCe-EEecCC-CHHHHHHHHHHHHhccCceEEEEeCCCH-HHHHHHHHHcCcCeEEE---eCCC-C--CcH
Confidence 444445454322 234432 3455666777777765 45777776554 666777665 4898754 3222 2 123
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
..++.|+++++.. +.++.+.+..+.+.+..+.++|||.+++|
T Consensus 132 ~~~~~i~~i~~~~-----~~~Vivg~v~t~e~A~~l~~aGaD~I~VG 173 (361)
T 3khj_A 132 NIIRTLKEIKSKM-----NIDVIVGNVVTEEATKELIENGADGIKVG 173 (361)
T ss_dssp HHHHHHHHHHHHC-----CCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHHHhc-----CCcEEEccCCCHHHHHHHHHcCcCEEEEe
Confidence 4456677776653 35666655567999999999999999996
|
| >1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A | Back alignment and structure |
|---|
Probab=94.57 E-value=0.22 Score=49.24 Aligned_cols=167 Identities=18% Similarity=0.210 Sum_probs=87.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc--CCCEE-EE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GADIV-SV 144 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a--GAd~I-tv 144 (281)
|+....+..+.+.+.|+|+|-|. ++...++.-..=.++++.+++.++.|+-+ -+.+|. .++.+.++ |+++| .+
T Consensus 338 ~~~~a~~~A~~~v~~GAdiIDIg-pg~~~v~~~ee~~rvv~~i~~~~~vpisI--DT~~~~-v~eaal~~~~G~~iINdi 413 (566)
T 1q7z_A 338 NEEIVIKEAKTQVEKGAEVLDVN-FGIESQIDVRYVEKIVQTLPYVSNVPLSL--DIQNVD-LTERALRAYPGRSLFNSA 413 (566)
T ss_dssp CCHHHHHHHHHHHHTTCSEEEEE-CSSGGGSCHHHHHHHHHHHHHHTCSCEEE--ECCCHH-HHHHHHHHCSSCCEEEEE
T ss_pred CHHHHHHHHHHHHHCCCCEEEEC-CCCCCCCHHHHHHHHHHHHHhhCCceEEE--eCCCHH-HHHHHHHhcCCCCEEEEC
Confidence 44444445566678899986443 11111111111223455555545666655 345655 56777788 99987 33
Q ss_pred cccccccccHHHHHHHHHHcCCcEEEEECCC-CC------HHHHHHhhc---c--C-CEEEEEeecCCC---C-CCccch
Q 023494 145 HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TS------LSAIECVLD---V--V-DLVLIMSVNPGF---G-GQSFIE 207 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-t~------ie~~~~~l~---~--v-D~IlvmsV~pG~---~-GQ~f~~ 207 (281)
..+ .+.+.+.+..++++|..+.+.-..+ +| ++.+++.++ . + +-|++ +||+ + |+
T Consensus 414 s~~---~~~~~~~~~~~~~~g~~vV~m~~~~~~p~t~~~~~~~l~~~~~~a~~~Gi~~~Iil---DPg~~~igfgk---- 483 (566)
T 1q7z_A 414 KVD---EEELEMKINLLKKYGGTLIVLLMGKDVPKSFEERKEYFEKALKILERHDFSDRVIF---DPGVLPLGAEG---- 483 (566)
T ss_dssp ESC---HHHHHHHHHHHHHHCCEEEEESCSSSCCCSHHHHHHHHHHHHHHHHHTTCGGGEEE---ECCCCCTTTTC----
T ss_pred Ccc---hhhHHHHHHHHHHhCCeEEEEeCCCCCcCCHHHHHHHHHHHHHHHHHCCCCCcEEE---eCCCCcccCcH----
Confidence 443 1334678888999998665543322 11 222222222 1 3 23433 8887 3 33
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChh-------------cHHHHHHcCCcEEEE
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-------------NAYKVIEAGANALVA 253 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-------------~i~~~~~aGAD~~Vv 253 (281)
+.++-|++++.+... ++++ -.|++-. -+..++++|+|++++
T Consensus 484 ~~~~~l~~~~~~~~~---g~p~--l~G~Snksf~~~~~~~l~~t~a~~a~~~G~~i~rv 537 (566)
T 1q7z_A 484 KPVEVLKTIEFISSK---GFNT--TVGLSNLSFGLPDRSYYNTAFLVLGISKGLSSAIM 537 (566)
T ss_dssp CHHHHHHHHHHHHHT---TCEE--CCBGGGGSTTSTTHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHHHHhC---CCCE--EEEeCcccccCCHHHHHHHHHHHHHHHcCCCEEEE
Confidence 444444444444321 3454 3455322 223457899999987
|
| >1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.027 Score=48.94 Aligned_cols=37 Identities=22% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
++++.+.|||+ .+.+.++.++|||.+++|++.+..++
T Consensus 73 ~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~l~~p~ 110 (241)
T 1qo2_A 73 AEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSKVLEDPS 110 (241)
T ss_dssp GGGEEEESSCCSHHHHHHHHHTTCCEEEECHHHHHCTT
T ss_pred CCcEEEECCCCCHHHHHHHHHCCCCEEEECchHhhChH
Confidence 47899999999 78999999999999999999886554
|
| >2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A | Back alignment and structure |
|---|
Probab=94.48 E-value=0.23 Score=49.28 Aligned_cols=120 Identities=13% Similarity=0.152 Sum_probs=81.3
Q ss_pred HHHcCCCEEEEccccccccc---HHHHHHHHHH----cC------CcEEEEECCCCCHHHHHHhhccCCEEEEEeec---
Q 023494 134 FIKAGADIVSVHCEQSSTIH---LHRTLNQIKD----LG------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVN--- 197 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~---i~~~l~~ik~----~G------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~--- 197 (281)
+.+.|...|-|+.-. +.++ ..+.++.++. .| .++|+.+....-+..+.+++..+|++.+.+.+
T Consensus 380 A~~~G~~~Im~PmV~-t~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia~~vDf~siGtNDLtq 458 (575)
T 2hwg_A 380 ASAFGKLRIMFPMII-SVEEVRALRKEIEIYKQELRDEGKAFDESIEIGVMVETPAAATIARHLAKEVDFFSIGTNDLTQ 458 (575)
T ss_dssp HTTSSCEEEEESSCC-CHHHHHHHHHHHHHHHHHHHHTTCCCCTTCEEEEEECSHHHHHTHHHHHTTCSEEEECHHHHHH
T ss_pred HHhcCCCEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHhCCEEEECHHHHHH
Confidence 344588888887654 3455 4444444433 24 56788885433446677788889999885431
Q ss_pred -----------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC--ChhcHHHHHHcCCcEEEEccc
Q 023494 198 -----------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 198 -----------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI--~~e~i~~~~~aGAD~~VvGSa 256 (281)
-|..+++|.|.++.-|+.+.+..... +.++.|=|.. +++.++.+...|.|.+.++..
T Consensus 459 y~la~dR~~~~l~~~~dp~~paVl~li~~vv~aa~~~--g~~vgvCGe~agdp~~~~~l~~lG~~~~S~~p~ 528 (575)
T 2hwg_A 459 YTLAVDRGNDMISHLYQPMSPSVLNLIKQVIDASHAE--GKWTGMCGELAGDERATLLLLGMGLDEFSMSAI 528 (575)
T ss_dssp HHHTCCTTCGGGGGGCCSSSHHHHHHHHHHHHHHHHT--TCEEEECSTTTTCTTTHHHHHHTTCCEEEECGG
T ss_pred HHhCcCCCccccccccCCCCHHHHHHHHHHHHHHHHh--CCeEEEeCCCCCCHHHHHHHHHCCCCEEEECcc
Confidence 12235778899988888887776554 4677773332 688999999999999998854
|
| >1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.096 Score=44.89 Aligned_cols=48 Identities=19% Similarity=0.288 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
..++.++++++.. ++++.+.|||+ ++.+.++.++|||.+.+|+..+..
T Consensus 64 ~~~~~i~~i~~~~-----~ipvi~~g~i~~~~~~~~~~~~Gad~V~i~~~~~~~ 112 (253)
T 1h5y_A 64 TFIDSVKRVAEAV-----SIPVLVGGGVRSLEDATTLFRAGADKVSVNTAAVRN 112 (253)
T ss_dssp HHHHHHHHHHHHC-----SSCEEEESSCCSHHHHHHHHHHTCSEEEESHHHHHC
T ss_pred ccHHHHHHHHHhc-----CCCEEEECCCCCHHHHHHHHHcCCCEEEEChHHhhC
Confidence 4455666666543 47888999998 789999999999999999987743
|
| >3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A* | Back alignment and structure |
|---|
Probab=94.29 E-value=2 Score=39.27 Aligned_cols=182 Identities=14% Similarity=0.204 Sum_probs=110.7
Q ss_pred ccCccCH---HHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCc-CCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 66 SANFAKL---GEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 66 a~D~~~l---~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+.|..++ .-.++.+++.+...| +-+-.|. |.+ ..+-..+++...+ ..+.|+-+||==..-...+..++++|.
T Consensus 21 AfNv~n~e~~~avi~AAee~~sPvI-lq~s~g~~~y~g-~~~~~~~v~~aa~~~~~VPValHLDHg~~~e~~~~ai~~GF 98 (307)
T 3n9r_A 21 AFNFVNFEMLNAIFEAGNEENSPLF-IQASEGAIKYMG-IDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGF 98 (307)
T ss_dssp EEECSSHHHHHHHHHHHHHHTCCEE-EEEEHHHHHHHC-HHHHHHHHHHHHHHSTTSCEEEEEEEECSHHHHHHHHHHTC
T ss_pred EEeeCCHHHHHHHHHHHHHhCCCEE-EEcChhhhhhCC-HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHhCC
Confidence 3444444 345667777777765 4444442 211 1111223333333 367999999966544457888999998
Q ss_pred CEEEEcccccc----cccHHHHHHHHHHcCCcEEEEEC----------------CCCCHHHHHHhhc--cCCEEEE--Ee
Q 023494 140 DIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGVVLN----------------PATSLSAIECVLD--VVDLVLI--MS 195 (281)
Q Consensus 140 d~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~Glai~----------------p~t~ie~~~~~l~--~vD~Ilv--ms 195 (281)
+.|-+=.-..+ ...-+++++.+++.|+-+-.-|. .-|..++..++.+ .+|.+.+ .+
T Consensus 99 tSVMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt 178 (307)
T 3n9r_A 99 TSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVKESQVDYLAPAIGT 178 (307)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHHHHCCSEEEECSSC
T ss_pred CcEEEECCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHHHHCCCEEEEecCC
Confidence 77766543222 12245777888888876532211 1267777777765 4898764 33
Q ss_pred ecCCC-C---CCccchhHHHHHHHHHHHhhhcCCCCeEEEec-----------------------CCChhcHHHHHHcCC
Q 023494 196 VNPGF-G---GQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-----------------------GVGPKNAYKVIEAGA 248 (281)
Q Consensus 196 V~pG~-~---GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG-----------------------GI~~e~i~~~~~aGA 248 (281)
+| |. . ..+.. +++|++++++. ++++..=| |+..+.++++++.|+
T Consensus 179 ~H-G~Yk~~~~p~Ld---~~~L~~I~~~~-----~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV 249 (307)
T 3n9r_A 179 SH-GAFKFKGEPKLD---FERLQEVKRLT-----NIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESVKGGI 249 (307)
T ss_dssp CS-SSBCCSSSCCCC---HHHHHHHHHHH-----CSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTE
T ss_pred cc-cccCCCCCCccC---HHHHHHHHhcC-----CCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHHHHHHcCc
Confidence 44 22 1 12333 45555555442 36788888 788999999999999
Q ss_pred cEEEEccccc
Q 023494 249 NALVAGSAVF 258 (281)
Q Consensus 249 D~~VvGSaIf 258 (281)
.-+=+++.+.
T Consensus 250 ~KiNi~Tdl~ 259 (307)
T 3n9r_A 250 NKVNTDTDLR 259 (307)
T ss_dssp EEEEECHHHH
T ss_pred eEEEechHHH
Confidence 9999998764
|
| >1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=94.26 E-value=0.53 Score=40.71 Aligned_cols=111 Identities=17% Similarity=0.248 Sum_probs=66.9
Q ss_pred HHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcEEEEE---CCCCCHHHHHHhhc-----cCCEEEEEeec
Q 023494 131 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKAGVVL---NPATSLSAIECVLD-----VVDLVLIMSVN 197 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~Glai---~p~t~ie~~~~~l~-----~vD~IlvmsV~ 197 (281)
.+.+.+.|||.|-++.... ..+...+.++.+++....+.+-+ .+....+.+.+... .+|+|- +.
T Consensus 76 ~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a~~a~eaGad~I~---ts 152 (225)
T 1mzh_A 76 AVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAVEICIEAGADFIK---TS 152 (225)
T ss_dssp HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHHHHHHHHTCSEEE---CC
T ss_pred HHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHHHHHHHhCCCEEE---EC
Confidence 3467789999999765421 01224455777776532333433 34434333333322 389992 23
Q ss_pred CCCC-CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 198 PGFG-GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 198 pG~~-GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
.|+. |. .+++-++++++... .+++|-+.|||+ .+.+.+++++|||.+
T Consensus 153 tg~~~gg----a~~~~i~~v~~~v~---~~ipVia~GGI~t~~da~~~l~aGA~~i 201 (225)
T 1mzh_A 153 TGFAPRG----TTLEEVRLIKSSAK---GRIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp CSCSSSC----CCHHHHHHHHHHHT---TSSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCCCCC----CCHHHHHHHHHHhC---CCCcEEEECCCCCHHHHHHHHHhCchHH
Confidence 3552 21 24556666666543 247999999998 889999999999953
|
| >3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A* | Back alignment and structure |
|---|
Probab=94.20 E-value=0.33 Score=45.77 Aligned_cols=169 Identities=12% Similarity=0.159 Sum_probs=100.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc------cCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI------TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~------~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|.....+.++.+.++|++.+-.. .|-|.. .+|.+..+.|+++ .++++... +.||. -++.+.+.
T Consensus 154 s~e~a~~~a~~~k~aGa~~vk~q----~fkprts~~~f~gl~~egl~~L~~~~~~~Gl~~~te--~~d~~-~~~~l~~~- 225 (385)
T 3nvt_A 154 SYEQVAAVAESIKAKGLKLIRGG----AFKPRTSPYDFQGLGLEGLKILKRVSDEYGLGVISE--IVTPA-DIEVALDY- 225 (385)
T ss_dssp CHHHHHHHHHHHHHTTCCEEECB----SSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEE--CCSGG-GHHHHTTT-
T ss_pred CHHHHHHHHHHHHHcCCCeEEcc----cccCCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEe--cCCHH-HHHHHHhh-
Confidence 44445566677888999977553 444321 3556666666554 56676663 34443 34555666
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc------CCEEEEEe-e--cCCCCCCccchhH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMS-V--NPGFGGQSFIESQ 209 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~------vD~Ilvms-V--~pG~~GQ~f~~~~ 209 (281)
+|++-+.... ..+ ..+++++-+.|+-+++.......++++...++. -+++++.+ + +|.+. ...--
T Consensus 226 vd~lkIgs~~--~~n-~~LL~~~a~~gkPVilk~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~rG~s~yp~~~---~~~ld 299 (385)
T 3nvt_A 226 VDVIQIGARN--MQN-FELLKAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKAT---RNTLD 299 (385)
T ss_dssp CSEEEECGGG--TTC-HHHHHHHHTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSCCSS---SSBCC
T ss_pred CCEEEECccc--ccC-HHHHHHHHccCCcEEEecCCCCCHHHHHHHHHHHHHcCCCeEEEEECCCCCCCCCC---ccccC
Confidence 9999999774 233 468888889999999998874455444333221 35666554 2 23221 11112
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEec--CCC-h----hcHHHHHHcCCcEEEEcc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDG--GVG-P----KNAYKVIEAGANALVAGS 255 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDG--GI~-~----e~i~~~~~aGAD~~VvGS 255 (281)
+.-|..+++.. +++|.+|- |++ . ......+.+|||++++=.
T Consensus 300 l~~i~~lk~~~-----~lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~ 347 (385)
T 3nvt_A 300 ISAVPILKKET-----HLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV 347 (385)
T ss_dssp TTHHHHHHHHB-----SSCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred HHHHHHHHHhc-----CCCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence 33455555543 46788882 222 1 233457889999998876
|
| >4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A | Back alignment and structure |
|---|
Probab=94.09 E-value=0.67 Score=43.27 Aligned_cols=113 Identities=23% Similarity=0.272 Sum_probs=69.5
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcC-CcEEEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG-AKAGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G-~k~Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+...+.++|. .-.+|... +.+...+.++.+|+.+ ..+++.+... ...+.++.+++ .+|+|.+-+. . | ..
T Consensus 62 lA~avA~aGG-lg~i~~~~-s~e~~~~~i~~vk~~~~l~vga~vg~~~~~~~~~~~lieaGvd~I~idta-~---G--~~ 133 (366)
T 4fo4_A 62 LAIALAQEGG-IGFIHKNM-SIEQQAAQVHQVKISGGLRVGAAVGAAPGNEERVKALVEAGVDVLLIDSS-H---G--HS 133 (366)
T ss_dssp HHHHHHHTTC-EEEECSSS-CHHHHHHHHHHHHTTTSCCCEEECCSCTTCHHHHHHHHHTTCSEEEEECS-C---T--TS
T ss_pred HHHHHHHcCC-ceEeecCC-CHHHHHHHHHHHHhcCceeEEEEeccChhHHHHHHHHHhCCCCEEEEeCC-C---C--CC
Confidence 4444566664 33445433 3455667777777754 4566665432 23456666655 4898765321 1 2 22
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
+..++.|+++++..+ +.++.+....+.+.+..+.++|||.+++|
T Consensus 134 ~~~~~~I~~ik~~~p----~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG 177 (366)
T 4fo4_A 134 EGVLQRIRETRAAYP----HLEIIGGNVATAEGARALIEAGVSAVKVG 177 (366)
T ss_dssp HHHHHHHHHHHHHCT----TCEEEEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHHhcC----CCceEeeeeCCHHHHHHHHHcCCCEEEEe
Confidence 456677777777643 35554433567999999999999999995
|
| >2xz9_A Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria); thermophilic, PEP-utilising enzyme, transferase; 1.68A {Thermoanaerobacter tengcongensis} PDB: 2bg5_A 2xz7_A* | Back alignment and structure |
|---|
Probab=94.01 E-value=0.089 Score=48.49 Aligned_cols=121 Identities=13% Similarity=0.145 Sum_probs=81.2
Q ss_pred HHHHcCCCEEEEccccccccc---HHHHHHHHHH----cC------CcEEEEECCCCCHHHHHHhhccCCEEEEEeecC-
Q 023494 133 DFIKAGADIVSVHCEQSSTIH---LHRTLNQIKD----LG------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP- 198 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~---i~~~l~~ik~----~G------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p- 198 (281)
.+.+.|+..|.++.-. +.++ ..+.++.++. .| .++|+.+....-+..+.+++..+|.+.+.+-+-
T Consensus 130 ra~~~G~~~ImvPmV~-s~~E~~~a~~~v~~~~~~~r~~G~~~~~~~~vg~mIEtp~av~~~d~Ia~~vD~~siGtnDLt 208 (324)
T 2xz9_A 130 RASAYGNVQIMYPMIS-SVEEVRKANSILEEVKAELDREGVKYDKEIKVGIMVEIPSAAVTADILAKEVDFFSIGTNDLT 208 (324)
T ss_dssp HHGGGSCEEEEECSCC-CHHHHHHHHHHHHHHHHHHHHHTCCCCTTCEEEEEECSHHHHHTHHHHTTTCSEEEECHHHHH
T ss_pred HHHhCCCCEEEEcCCC-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEECcHHHHHHHHHHHHhCcEEEECHHHHH
Confidence 3445699999888654 3555 4445544443 23 567888854444577788888899998754321
Q ss_pred ----C---------CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC--ChhcHHHHHHcCCcEEEEccc
Q 023494 199 ----G---------FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV--GPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 ----G---------~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI--~~e~i~~~~~aGAD~~VvGSa 256 (281)
| ..++++.|..+.-|+++.+-.... +.++.|=|.+ +++.++.+++.|.|.+.++..
T Consensus 209 q~~lg~dR~~~~~~~~~~~~~p~v~~ai~~vv~aar~a--G~~vgvcge~~~dp~~~~~l~~lG~~~~si~p~ 279 (324)
T 2xz9_A 209 QYTLAVDRMNEHVKEYYQPFHPAILRLVKMVIDAAHKE--GKFAAMCGEMAGDPLAAVILLGLGLDEFSMSAT 279 (324)
T ss_dssp HHHTTCCTTCGGGGGGCCTTCHHHHHHHHHHHHHHHHT--TCEEEECSGGGGCHHHHHHHHHHTCCEEEECGG
T ss_pred HHHhCCCCCcccccccCCCCCHHHHHHHHHHHHHHHHH--CCceeecCccCCCHHHHHHHHHCCCCEEEEChh
Confidence 1 124677888888888887776655 3566664443 677888999999999998854
|
| >3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* | Back alignment and structure |
|---|
Probab=93.97 E-value=0.72 Score=49.30 Aligned_cols=171 Identities=13% Similarity=0.109 Sum_probs=101.9
Q ss_pred CHHHHHHHHHHc--CCCeEEEE---eeeCcccccccCC-HHHHHHcCcC-CCCCeeEEEEecC-------h----hhHHH
Q 023494 71 KLGEQVKAVELA--GCDWIHVD---VMDGRFVPNITIG-PLVVDALRPV-TDLPLDVHLMIVE-------P----EQRVP 132 (281)
Q Consensus 71 ~l~~~l~~l~~~--G~d~iHiD---ImDG~fvpn~~~G-~~~I~~ir~~-t~~~idaHLmv~d-------p----~~~i~ 132 (281)
+..+.++.|.+. |...|+.- ..|.. .|.+... .+.++.|++. ++.++.+.+--.| | .++++
T Consensus 556 ~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~-~~~~~e~~~e~l~~l~~~~~~~~~~~l~R~~n~vgy~~~pd~v~~~~v~ 634 (1150)
T 3hbl_A 556 DMINIASKTADVFKDGFSLEMWGGATFDVA-YNFLKENPWERLERLRKAIPNVLFQMLLRASNAVGYKNYPDNVIHKFVQ 634 (1150)
T ss_dssp HHHHHHHHHHHHTTTCSEEEEEETTHHHHH-HHTSCCCHHHHHHHHHHHCCSSEEEEEEETTTBTCSSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCCcEEeecCCceEEec-ccccCCCHHHHHHHHHHhCCCCeEEEEeccccccccccCCchhHHHHHH
Confidence 333444455555 66665542 12211 1223222 4567777764 5666655442211 2 24688
Q ss_pred HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC-----------CCHHHHHHhhc-----cCCEEEEEee
Q 023494 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-----------TSLSAIECVLD-----VVDLVLIMSV 196 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-----------t~ie~~~~~l~-----~vD~IlvmsV 196 (281)
.+.++|+|.+.+-.-..........++.+++.|..+...+++. +..+.+.++++ .+|.|.+-
T Consensus 635 ~a~~~Gvd~irif~~~sd~~~~~~~~~~~~e~g~~~~~~i~~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~-- 712 (1150)
T 3hbl_A 635 ESAKAGIDVFRIFDSLNWVDQMKVANEAVQEAGKISEGTICYTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIK-- 712 (1150)
T ss_dssp HHHHTTCCEEEEECTTCCGGGGHHHHHHHHHTTCEEEEEEECCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEE--
T ss_pred HHHhCCcCEEEEEeeCCHHHHHHHHHHHHHHHhhheeEEEeecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEc--
Confidence 8899999998776543334567788889999998887776655 33344444433 26776653
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
-..|-.....+.+.++.+++.+ +++|.+ |-|....|.-..+++|||.+
T Consensus 713 --Dt~G~~~P~~~~~lv~~l~~~~-----~~~i~~H~Hnt~G~a~An~laA~~aGa~~v 764 (1150)
T 3hbl_A 713 --DMAGLLKPKAAYELIGELKSAV-----DLPIHLHTHDTSGNGLLTYKQAIDAGVDII 764 (1150)
T ss_dssp --ETTCCCCHHHHHHHHHHHHHHC-----CSCEEEEECBTTSCHHHHHHHHHHTTCSEE
T ss_pred --CccCCCCHHHHHHHHHHHHHhc-----CCeEEEEeCCCCcHHHHHHHHHHHhCCCEE
Confidence 2223222234455666666654 356766 78888889999999999975
|
| >2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.69 Score=42.59 Aligned_cols=190 Identities=15% Similarity=0.147 Sum_probs=114.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|..=+-++..+.-.++.+++.+...| +-+-.|. |.. ..+-..+++...+. .+.|+-+||==......+..++++|
T Consensus 21 ~AfNv~n~e~~~Ail~AAee~~sPvI-lq~s~g~~~y~g-~~~~~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~G 98 (323)
T 2isw_A 21 GAFNVNNMEQIQGIMKAVVQLKSPVI-LQCSRGALKYSD-MIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLG 98 (323)
T ss_dssp EEEECCSHHHHHHHHHHHHHTTCCEE-EEEEHHHHHHTT-THHHHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTT
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEE-EECChhHHHhCC-HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcC
Confidence 33333344444456677778877765 5554442 221 11111233333333 6799999997655556788999999
Q ss_pred CCEEEEccccccc----ccHHHHHHHHHHcCCcEEEEE-----------C--CCCCHHHHHHhhc--cCCEEEE--Eeec
Q 023494 139 ADIVSVHCEQSST----IHLHRTLNQIKDLGAKAGVVL-----------N--PATSLSAIECVLD--VVDLVLI--MSVN 197 (281)
Q Consensus 139 Ad~Itvh~Ea~~~----~~i~~~l~~ik~~G~k~Glai-----------~--p~t~ie~~~~~l~--~vD~Ilv--msV~ 197 (281)
.+.|-+=.-..+. ..-+++++.+++.|+-+-.-| + .-|..++..++.+ .+|.+.+ .++|
T Consensus 99 FtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~~TgvD~LAvaiGt~H 178 (323)
T 2isw_A 99 FSSVMIDASHHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVELTGVDALAVAIGTSH 178 (323)
T ss_dssp CSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESCC----------CCCCCHHHHHHHHHHHCCSEEEECSSCCS
T ss_pred CCeEEecCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccCcccccccCCHHHHHHHHHHHCCCEEEEecCccc
Confidence 8877665433221 124567778888886651111 1 1277777888775 4897654 2333
Q ss_pred CCCC--CCccchhHHHHHHHHHHHhhhcCCCCeEEEec-----------------------CCChhcHHHHHHcCCcEEE
Q 023494 198 PGFG--GQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-----------------------GVGPKNAYKVIEAGANALV 252 (281)
Q Consensus 198 pG~~--GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG-----------------------GI~~e~i~~~~~aGAD~~V 252 (281)
--+. |.+-..-.+++|+++++.+ ++++..=| |+..+.++++++.|+--+=
T Consensus 179 G~Yk~~~~p~~~L~~~~L~~I~~~~-----~vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i~~ai~~GV~KiN 253 (323)
T 2isw_A 179 GAYKFKSESDIRLAIDRVKTISDLT-----GIPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIGEGVCKIN 253 (323)
T ss_dssp SSBCCCC----CCCCHHHHHHHHHH-----CSCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHHTTEEEEE
T ss_pred cccCCCCCcccccCHHHHHHHHHHh-----CCCeEEECCCCCCHHHHHHHHHhccccccCCCCCHHHHHHHHHCCCeEEE
Confidence 1111 2110001245666666665 37898999 8899999999999999999
Q ss_pred Eccccc
Q 023494 253 AGSAVF 258 (281)
Q Consensus 253 vGSaIf 258 (281)
+++.+.
T Consensus 254 i~Tdl~ 259 (323)
T 2isw_A 254 VDSDSR 259 (323)
T ss_dssp ECHHHH
T ss_pred EChHHH
Confidence 998763
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=93.85 E-value=0.4 Score=41.21 Aligned_cols=131 Identities=9% Similarity=-0.071 Sum_probs=76.7
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCe-eEEEE--ecCh-------
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL-DVHLM--IVEP------- 127 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~i-daHLm--v~dp------- 127 (281)
++|+-+.++..-..+++.++.+.+.|.+.+++..-..+.-+.-....+.++++-+..++.+ .+|.- .++|
T Consensus 7 m~lg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~ 86 (272)
T 2q02_A 7 TRFCINRKIAPGLSIEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKK 86 (272)
T ss_dssp GGEEEEGGGCTTSCHHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHH
T ss_pred hhhhhcccccCCCCHHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHH
Confidence 4677777776556899999999999999998853111101101233444444333356655 55542 1222
Q ss_pred -hhHHHHHHHcCCCEEEEcccccc--------cccHHHHHHHHHHcCCcEEEEECC--C---CCHHHHHHhhccC
Q 023494 128 -EQRVPDFIKAGADIVSVHCEQSS--------TIHLHRTLNQIKDLGAKAGVVLNP--A---TSLSAIECVLDVV 188 (281)
Q Consensus 128 -~~~i~~~~~aGAd~Itvh~Ea~~--------~~~i~~~l~~ik~~G~k~Glai~p--~---t~ie~~~~~l~~v 188 (281)
.+.++.+.+.|++.|.+|.-... .+.+.++.+.++++|+++++--.+ . ...+.+..+++.+
T Consensus 87 ~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~~E~~~~~~~~~~~~~~~~~l~~~v 161 (272)
T 2q02_A 87 TEGLLRDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREA 161 (272)
T ss_dssp HHHHHHHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCEEEEccCCCchhHHHHHHHHHHHHHHHHHHHcCCEEEEEecCCCcccccCHHHHHHHHHHh
Confidence 23456677889999999854210 233456666778889888775432 1 2345555666554
|
| >3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=93.72 E-value=2.5 Score=38.15 Aligned_cols=181 Identities=15% Similarity=0.171 Sum_probs=113.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCc--CCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRP--VTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~--~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
|+..+.-.++.+++.+...| +-+-.|.. . +..|.. .++.+.+ ..+.|+-+||==..-...+..++++|.+.
T Consensus 30 n~e~~~avi~AAee~~sPvI-lq~s~~~~-~-~~~g~~~~~~~v~~~A~~~~~~VPValHlDHg~~~e~i~~ai~~GFtS 106 (288)
T 3q94_A 30 NLEWTQAILAAAEEEKSPVI-LGVSEGAA-R-HMTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGFTS 106 (288)
T ss_dssp SHHHHHHHHHHHHHTTCCEE-EEEEHHHH-H-HTSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSHHHHHHHHHHTCSE
T ss_pred CHHHHHHHHHHHHHhCCCEE-EECChhhh-h-hcCCHHHHHHHHHHHHHhcCCCCcEEEECCCCCCHHHHHHHHHcCCCe
Confidence 33344455677788887765 54444421 0 111333 3444444 46799999996654455788899999888
Q ss_pred EEEccccccc----ccHHHHHHHHHHcCCcEEEEEC--------------CCCCHHHHHHhhc--cCCEEEE--EeecCC
Q 023494 142 VSVHCEQSST----IHLHRTLNQIKDLGAKAGVVLN--------------PATSLSAIECVLD--VVDLVLI--MSVNPG 199 (281)
Q Consensus 142 Itvh~Ea~~~----~~i~~~l~~ik~~G~k~Glai~--------------p~t~ie~~~~~l~--~vD~Ilv--msV~pG 199 (281)
|-+=.-..+. ..-+++++.+++.|+-+-.-|. .-|..++..++.+ .+|.+.+ .++|--
T Consensus 107 VMiDgS~~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~ 186 (288)
T 3q94_A 107 VMIDASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVEATGIDCLAPALGSVHGP 186 (288)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHHHHHHHHCCSEEEECSSCBSSC
T ss_pred EEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCccccCCCHHHHHHHHHHHCCCEEEEEcCcccCC
Confidence 7765433221 2245777888888876533221 2377788888875 4898765 344411
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEccccc
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+.|.+ .-.+++|+++++.+ ++++..=|| +..+.++++++.|+--+=+++.+.
T Consensus 187 Y~~~p--~Ld~~~L~~I~~~v-----~vpLVlHGgSG~~~e~i~~ai~~Gv~KiNi~Tdl~ 240 (288)
T 3q94_A 187 YKGEP--NLGFAEMEQVRDFT-----GVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQ 240 (288)
T ss_dssp CSSSC--CCCHHHHHHHHHHH-----CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred cCCCC--ccCHHHHHHHHHhc-----CCCEEEeCCCCCCHHHHHHHHHcCCeEEEEChHHH
Confidence 22221 12256677777765 367877664 558899999999999999998764
|
| >3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.94 Score=41.21 Aligned_cols=102 Identities=16% Similarity=0.176 Sum_probs=54.7
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcC---cCCCCCeeEEEEecChhhHHHHHHH--cCCC
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALR---PVTDLPLDVHLMIVEPEQRVPDFIK--AGAD 140 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir---~~t~~~idaHLmv~dp~~~i~~~~~--aGAd 140 (281)
..|+....+..+.+.+.|+|+|-|-. +...++.-..=.+++..|+ +.++.|+-+| +.+|. .++.+.+ +|++
T Consensus 33 ~~~~~~a~~~A~~~v~~GAdiIDIg~-g~~~v~~~eem~rvv~~i~~~~~~~~vpisID--T~~~~-V~eaaL~~~~Ga~ 108 (300)
T 3k13_A 33 EKKYDEALSIARQQVEDGALVIDVNM-DDGLLDARTEMTTFLNLIMSEPEIARVPVMID--SSKWE-VIEAGLKCLQGKS 108 (300)
T ss_dssp TTCHHHHHHHHHHHHHTTCSEEEEEC-CCTTSCHHHHHHHHHHHHHTCHHHHTSCEEEE--CSCHH-HHHHHHHHCSSCC
T ss_pred cCCHHHHHHHHHHHHHCCCCEEEECC-CCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEe--CCCHH-HHHHHHHhcCCCC
Confidence 34444445555667788999874432 1111111011112233332 3345665542 34554 5666777 7999
Q ss_pred EEE-EcccccccccHHHHHHHHHHcCCcEEEEE
Q 023494 141 IVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVL 172 (281)
Q Consensus 141 ~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai 172 (281)
+|- +..+.. .+.+.+.+..++++|..+.+.-
T Consensus 109 iINdIs~~~~-d~~~~~~~~l~a~~ga~vV~mh 140 (300)
T 3k13_A 109 IVNSISLKEG-EEVFLEHARIIKQYGAATVVMA 140 (300)
T ss_dssp EEEEECSTTC-HHHHHHHHHHHHHHTCEEEEES
T ss_pred EEEeCCcccC-ChhHHHHHHHHHHhCCeEEEEe
Confidence 773 344421 2345588999999998776653
|
| >3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A* | Back alignment and structure |
|---|
Probab=93.69 E-value=0.38 Score=44.30 Aligned_cols=119 Identities=24% Similarity=0.227 Sum_probs=72.8
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcc-----cc--cc---cCC----------HHHHHHcCcCCCCCeeEEEEec--------
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRF-----VP--NI---TIG----------PLVVDALRPVTDLPLDVHLMIV-------- 125 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~f-----vp--n~---~~G----------~~~I~~ir~~t~~~idaHLmv~-------- 125 (281)
++.+.+.++|.|.|+|-.--|-. .| |. .+| .++++++|+..+.|+-+-|=..
T Consensus 148 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~~~g~~ 227 (340)
T 3gr7_A 148 NGARRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYHPDGLT 227 (340)
T ss_dssp HHHHHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCSTTSCC
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCC
Confidence 44456678999998876543211 12 21 344 6788899887778888866643
Q ss_pred --ChhhHHHHHHHcCCCEEEEccccc-------ccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc--CCEEEE
Q 023494 126 --EPEQRVPDFIKAGADIVSVHCEQS-------STIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV--VDLVLI 193 (281)
Q Consensus 126 --dp~~~i~~~~~aGAd~Itvh~Ea~-------~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~--vD~Ilv 193 (281)
++.++++.+.++|+|++++|.-.. ......+.++.+|+. ++.+ ++..-=+..+..++++.. +|.|.+
T Consensus 228 ~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~iPV-i~~GgI~s~e~a~~~L~~G~aD~V~i 306 (340)
T 3gr7_A 228 AKDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREADIPT-GAVGLITSGWQAEEILQNGRADLVFL 306 (340)
T ss_dssp GGGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTTCCE-EEESSCCCHHHHHHHHHTTSCSEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcCCcE-EeeCCCCCHHHHHHHHHCCCeeEEEe
Confidence 233456778899999999983110 011123566777764 4333 222222466777777663 899976
|
| >2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A | Back alignment and structure |
|---|
Probab=93.68 E-value=0.091 Score=49.81 Aligned_cols=51 Identities=29% Similarity=0.359 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhcCC-CCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 210 VKKISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~-~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+-++++++.+++.+. +..|++-||||++++..+.+.|+|.|-+|+.+.++
T Consensus 253 ~~~v~~v~~~ld~~G~~~~~I~aSggl~~~~i~~l~~~GvD~~gvGt~l~~~ 304 (398)
T 2i1o_A 253 EALIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA 304 (398)
T ss_dssp HHHHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHTTCCEEEECHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCceEEEEeCCCCHHHHHHHHHcCCCEEEeCcccCCC
Confidence 4445666666665442 47899999999999999999999999999987753
|
| >4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A* | Back alignment and structure |
|---|
Probab=93.59 E-value=0.57 Score=41.57 Aligned_cols=130 Identities=20% Similarity=0.159 Sum_probs=85.0
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC-cccccccCCHHHHHHcCcC-CCCCeeEEEEec-Ch--
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPV-TDLPLDVHLMIV-EP-- 127 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~-dp-- 127 (281)
+-++..+|+.+|.+-+..++.++++.+.+.|+|.+++++ |- .-.++...=.+.+..+|+. .++|+.+-+-.. +.
T Consensus 15 ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~-D~l~~~~~~~~v~~~l~~lr~~~~~lPiI~T~Rt~~EGG~ 93 (258)
T 4h3d_A 15 IGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRV-DFFENVENIKEVKEVLYELRSYIHDIPLLFTFRSVVEGGE 93 (258)
T ss_dssp ETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEG-GGCTTTTCHHHHHHHHHHHHHHCTTSCEEEECCCGGGTCS
T ss_pred eCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEee-ccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCC
Confidence 445677899999998888888888888888999999974 31 0012222233456667765 467887655442 11
Q ss_pred -----hhHHH---HHHHcC-CCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC--CCCC-HHHHHHh
Q 023494 128 -----EQRVP---DFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS-LSAIECV 184 (281)
Q Consensus 128 -----~~~i~---~~~~aG-Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~--p~t~-ie~~~~~ 184 (281)
..|.+ .+.+.| +|+|=+-... +.+...++++.+++.|.++.++.+ ..|| .+.+...
T Consensus 94 ~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~-~~~~~~~l~~~a~~~~~kiI~S~Hdf~~TP~~~el~~~ 161 (258)
T 4h3d_A 94 KLISRDYYTTLNKEISNTGLVDLIDVELFM-GDEVIDEVVNFAHKKEVKVIISNHDFNKTPKKEEIVSR 161 (258)
T ss_dssp CCCCHHHHHHHHHHHHHTTCCSEEEEEGGG-CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCchhhHHhhhc-cHHHHHHHHHHHHhCCCEEEEEEecCCCCCCHHHHHHH
Confidence 23443 345555 8999888764 234466778888999999998865 2355 3444443
|
| >1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* | Back alignment and structure |
|---|
Probab=93.54 E-value=0.27 Score=44.18 Aligned_cols=85 Identities=13% Similarity=0.054 Sum_probs=60.4
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCC-eEEEEeeeCcccccc----cCC------HHHHHHcCcCCCCCeeEEEEec-
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCD-WIHVDVMDGRFVPNI----TIG------PLVVDALRPVTDLPLDVHLMIV- 125 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d-~iHiDImDG~fvpn~----~~G------~~~I~~ir~~t~~~idaHLmv~- 125 (281)
..+..+|...+..++.+.++.+.+.|+| .|++.+- .|+. .+| .++++++|+.+++|+.+-+-..
T Consensus 94 ~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~iein~~----~P~~~g~~~~g~~~e~~~~iv~~vr~~~~~Pv~vKi~~~~ 169 (311)
T 1jub_A 94 GPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLS----CPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYF 169 (311)
T ss_dssp SCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESC----CCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCC
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHhcCCCeEEEEecc----CCCCCCcccccCCHHHHHHHHHHHHHhcCCCEEEEECCCC
Confidence 3466788877888888999999999999 8888653 2332 233 4678888887778887744322
Q ss_pred Chhh---HHHHHHHcCCCEEEEcc
Q 023494 126 EPEQ---RVPDFIKAGADIVSVHC 146 (281)
Q Consensus 126 dp~~---~i~~~~~aGAd~Itvh~ 146 (281)
+... +.+.+.++|+|.|++|.
T Consensus 170 ~~~~~~~~a~~~~~~G~d~i~v~~ 193 (311)
T 1jub_A 170 DLVHFDIMAEILNQFPLTYVNSVN 193 (311)
T ss_dssp SHHHHHHHHHHHTTSCCCEEEECC
T ss_pred CHHHHHHHHHHHHHcCCcEEEecC
Confidence 2222 35667788999999985
|
| >4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.63 Score=45.10 Aligned_cols=123 Identities=18% Similarity=0.104 Sum_probs=74.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
+..+.++.+.++|+|.+++|...|+. ..-.+.++++|+. ++.++.+ --+.++ +..+.+.++|||.|.+..-..
T Consensus 231 d~~~~a~~l~~aG~d~I~id~a~g~~----~~~~~~i~~ir~~~p~~~Vi~-g~v~t~-e~a~~l~~aGaD~I~Vg~g~G 304 (496)
T 4fxs_A 231 GNEERVKALVEAGVDVLLIDSSHGHS----EGVLQRIRETRAAYPHLEIIG-GNVATA-EGARALIEAGVSAVKVGIGPG 304 (496)
T ss_dssp CCHHHHHHHHHTTCSEEEEECSCTTS----HHHHHHHHHHHHHCTTCCEEE-EEECSH-HHHHHHHHHTCSEEEECSSCC
T ss_pred chHHHHHHHHhccCceEEeccccccc----hHHHHHHHHHHHHCCCceEEE-cccCcH-HHHHHHHHhCCCEEEECCCCC
Confidence 34566778888999999999887643 1234778888876 4677766 123443 367788999999999841100
Q ss_pred c-----------ccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC
Q 023494 150 S-----------TIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199 (281)
Q Consensus 150 ~-----------~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG 199 (281)
+ ..+ +.++.+.+++.++.+..+=.-.++-+..+.+...+|.|++.+...|
T Consensus 305 s~~~tr~~~g~g~p~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iGs~f~~ 368 (496)
T 4fxs_A 305 SICTTRIVTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVGSMFAG 368 (496)
T ss_dssp TTBCHHHHHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTT
T ss_pred cCcccccccCCCccHHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEecHHHhc
Confidence 0 111 3445555556676655432223444434444446999987654433
|
| >1ct5_A Protein (yeast hypothetical protein, selenoMet); TIM barrel, pyridoxal-5'-phosphate, selenomethionine, structural genomics, PSI; HET: PLP; 2.00A {Saccharomyces cerevisiae} SCOP: c.1.6.2 PDB: 1b54_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=2 Score=37.87 Aligned_cols=172 Identities=13% Similarity=0.123 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc-CCCEEEEcccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA-GADIVSVHCEQSSTI 152 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a-GAd~Itvh~Ea~~~~ 152 (281)
+.+..+.++|++++=+ ..+.++....+.+. + ++..|+.-.-+.+.++.+..+ ..+++ |.-. +.+
T Consensus 53 ~~i~~~~~aG~~~fgv--------a~vqEa~~~r~~~~---~-~l~~h~iG~lq~nk~~~~~~~~~~~l~--~sVd-s~~ 117 (256)
T 1ct5_A 53 SDIQILYDHGVREFGE--------NYVQELIEKAKLLP---D-DIKWHFIGGLQTNKCKDLAKVPNLYSV--ETID-SLK 117 (256)
T ss_dssp HHHHHHHHHTCCEEEE--------CCHHHHHHHHHHSC---T-TCEEEECSCCCGGGHHHHHHCTTEEEE--EEEC-SHH
T ss_pred HHHHHHHHcCCCEEEE--------EcHHHHHHHHHhcc---c-CeeEeecCCCCHHHHHHHhcccccCEE--EEEC-CHH
Confidence 4556688889997632 33344444444432 2 466666443333345555322 23332 3222 234
Q ss_pred cHHHHHHHHHHcCC---cE--EEEECCC--------CCHHHH----HHhh----ccCCEEEEEeec--CCCCCCccchhH
Q 023494 153 HLHRTLNQIKDLGA---KA--GVVLNPA--------TSLSAI----ECVL----DVVDLVLIMSVN--PGFGGQSFIESQ 209 (281)
Q Consensus 153 ~i~~~l~~ik~~G~---k~--Glai~p~--------t~ie~~----~~~l----~~vD~IlvmsV~--pG~~GQ~f~~~~ 209 (281)
...++-+.+++.|. .+ -|-+|.+ .+.+.+ +.+. +.+.+..+||.. |-..........
T Consensus 118 ~a~~l~~~a~~~~~~~~~l~V~lqVdtG~e~~R~G~~~~~e~~~l~~~i~~~~~~~L~l~Glmth~~~~~ad~~~~~~~~ 197 (256)
T 1ct5_A 118 KAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEECKYIKLNGLMTIGSWNVSHEDSKENRD 197 (256)
T ss_dssp HHHHHHHHHHHHCTTSCCEEEEEEBCCSSSCCSSSBCCHHHHHHHHHHHHSTTCCSEEEEEEECCCCCC---------HH
T ss_pred HHHHHHHHHHHcCCCCCCceEEEEEECCCCCCCcCcCchHHHHHHHHHHHHccCCCeeEEEEEEECCcCCCCCHHHHHHH
Confidence 45555566667776 44 4445554 121222 2222 235567788775 322221123345
Q ss_pred HHHHHHHHHHhhhcCC-CCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCH
Q 023494 210 VKKISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~-~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp 263 (281)
+++++++++.+.+ +. .+. .+-.|.+.+ .+..++.|+|.+=+|++||+..++
T Consensus 198 f~~~~~~~~~l~~-~~~~~~-~lS~Gms~d-~~~ai~~g~t~VR~G~~lfG~~~~ 249 (256)
T 1ct5_A 198 FATLVEWKKKIDA-KFGTSL-KLSMGMSAD-FREAIRQGTAEVRIGTDIFGARPP 249 (256)
T ss_dssp HHHHHHHHHHHHH-HHCCCC-EEECCCTTT-HHHHHHTTCSEEEESHHHHC----
T ss_pred HHHHHHHHHHHHh-cCCCCC-EEEecccHh-HHHHHHcCCCEEEecHHHhCCCcC
Confidence 6677666666543 21 122 347777653 566678999999999999986543
|
| >1ea0_A Glutamate synthase [NADPH] large chain; oxidoreductase, iron sulphur flavoprotein; HET: OMT FMN AKG; 3.0A {Azospirillum brasilense} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 2vdc_A* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.48 Score=51.64 Aligned_cols=128 Identities=19% Similarity=0.236 Sum_probs=79.0
Q ss_pred HHHHHH--HcCCCEEEEccccc--ccccHHHHHHHHHHc--CCcEEEEECCCCCH-HHHHHhhc-cCCEEEEEeecCCCC
Q 023494 130 RVPDFI--KAGADIVSVHCEQS--STIHLHRTLNQIKDL--GAKAGVVLNPATSL-SAIECVLD-VVDLVLIMSVNPGFG 201 (281)
Q Consensus 130 ~i~~~~--~aGAd~Itvh~Ea~--~~~~i~~~l~~ik~~--G~k~Glai~p~t~i-e~~~~~l~-~vD~IlvmsV~pG~~ 201 (281)
++..+. ..|.+.++-..... +.+++.+.++.+|+. ++.+++-+-+...+ .....+.+ .+|.|.+-..+.|.+
T Consensus 952 ~IA~~R~~~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~~AGAD~IvVsG~eGGTg 1031 (1479)
T 1ea0_A 952 MIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTG 1031 (1479)
T ss_dssp HHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCS
T ss_pred HHHHHcCCCCCCCccCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEEcCCCChHHHHHHHHHcCCcEEEEcCCCCCCC
Confidence 444443 34677765432210 123456788888887 67888866655443 33333333 489998754443432
Q ss_pred CCccch-------hHHHHHHHHHHHhhhcC--CCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 202 GQSFIE-------SQVKKISDLRRMCLEKG--VNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 202 GQ~f~~-------~~l~kI~~lr~l~~~~~--~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+ .+.. -+..-|.++++.+...+ .+++|.+||||. ...+.+.+.+|||.+-+|++.+
T Consensus 1032 a-sp~~~~~~~G~Pt~~aL~ev~~al~~~glr~~VpVIAdGGIrtG~DVakALaLGAdaV~iGTafL 1097 (1479)
T 1ea0_A 1032 A-SPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTASL 1097 (1479)
T ss_dssp S-EETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHHHH
T ss_pred C-CchhhhcCCchhHHHHHHHHHHHHHHcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeeEcHHHH
Confidence 2 2211 12345666666654433 258899999999 6788899999999999998863
|
| >2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.98 Score=41.86 Aligned_cols=118 Identities=11% Similarity=0.087 Sum_probs=78.8
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc-C-CcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-G-AKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G-~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
.+|+.+.+ .+.++|.+.+=+|.-. ......+.++++|+. | +.+.+..|.....+...++++. +++|-
T Consensus 146 ~~~e~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~gd~~l~vD~n~~~~~~~a~~~~~~l~~~~i~~iE-- 222 (384)
T 2pgw_A 146 ETAEELARDAAVGHAQGERVFYLKVGR-GEKLDLEITAAVRGEIGDARLRLDANEGWSVHDAINMCRKLEKYDIEFIE-- 222 (384)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHHTTSTTCEEEEECTTCCCHHHHHHHHHHHGGGCCSEEE--
T ss_pred CCHHHHHHHHHHHHHcCCCEEEECcCC-CHHHHHHHHHHHHHHcCCcEEEEecCCCCCHHHHHHHHHHHHhcCCCEEe--
Confidence 57776654 4567899999998642 123345777888865 4 6667777777777655454432 45542
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEccccc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVF 258 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf 258 (281)
|++.+..++-++++++.. +++|..|+.+. ++.+.++++.| +|++.+.-.-.
T Consensus 223 --------qP~~~~~~~~~~~l~~~~-----~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 275 (384)
T 2pgw_A 223 --------QPTVSWSIPAMAHVREKV-----GIPIVADQAAFTLYDVYEICRQRAADMICIGPREI 275 (384)
T ss_dssp --------CCSCTTCHHHHHHHHHHC-----SSCEEESTTCCSHHHHHHHHHTTCCSEEEECHHHH
T ss_pred --------CCCChhhHHHHHHHHhhC-----CCCEEEeCCcCCHHHHHHHHHcCCCCEEEEcchhh
Confidence 445455566666666543 47999999996 78888888776 89998864433
|
| >3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=93.01 E-value=0.64 Score=42.65 Aligned_cols=99 Identities=17% Similarity=0.229 Sum_probs=56.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccccc-------C------CHHHHHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT-------I------GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~-------~------G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
|+...-+..+.+.+.|+|+| ||==-..-|.-. . =..+|+.|++.++.|+-+ =+.+|. .++.+
T Consensus 47 ~~~~al~~A~~~v~~GAdII--DIGgeSTrPga~~~~~~V~~~eE~~Rv~pvI~~l~~~~~vpISI--DT~~~~-Va~aA 121 (314)
T 3tr9_A 47 DLNSALRTAEKMVDEGADIL--DIGGEATNPFVDIKTDSPSTQIELDRLLPVIDAIKKRFPQLISV--DTSRPR-VMREA 121 (314)
T ss_dssp SHHHHHHHHHHHHHTTCSEE--EEECCCSCTTC-----CHHHHHHHHHHHHHHHHHHHHCCSEEEE--ECSCHH-HHHHH
T ss_pred CHHHHHHHHHHHHHCCCCEE--EECCCCCCCCcccccCCCCHHHHHHHHHHHHHHHHhhCCCeEEE--eCCCHH-HHHHH
Confidence 44444445556678899986 443111234211 0 113456666655555554 335554 56778
Q ss_pred HHcCCCEEEEc-ccccccccHHHHHHHHHHcCCcEEEEECCCC
Q 023494 135 IKAGADIVSVH-CEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176 (281)
Q Consensus 135 ~~aGAd~Itvh-~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t 176 (281)
.++||++|-=- .+. ..+.+..++++|..+.+.-+.++
T Consensus 122 l~aGa~iINDVsg~~-----~~~m~~v~a~~g~~vVlMh~~G~ 159 (314)
T 3tr9_A 122 VNTGADMINDQRALQ-----LDDALTTVSALKTPVCLMHFPSE 159 (314)
T ss_dssp HHHTCCEEEETTTTC-----STTHHHHHHHHTCCEEEECCCCT
T ss_pred HHcCCCEEEECCCCC-----chHHHHHHHHhCCeEEEECCCCC
Confidence 88999987432 221 22577888899988877654433
|
| >3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=92.98 E-value=1.1 Score=40.24 Aligned_cols=142 Identities=13% Similarity=0.168 Sum_probs=82.7
Q ss_pred cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccH-HHHHHHHHHc-CCcEEEEECCCCCH
Q 023494 101 TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATSL 178 (281)
Q Consensus 101 ~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i-~~~l~~ik~~-G~k~Glai~p~t~i 178 (281)
+...+-|.-||..-+. -.-||.+....+.++|||+||+|.-. +..++ .+.+..+++. ..+.-+-.+|....
T Consensus 35 gVNIDhVAtLRnARg~------~~PDpv~aA~~ae~aGAdGITvHlRe-DrRHI~d~Dv~~L~~~i~t~lNlEma~t~em 107 (278)
T 3gk0_A 35 GVNIDHVATLRNARGT------AYPDPVRAALAAEDAGADAITLHLRE-DRRHIVDADVRTLRPRVKTRMNLECAVTPEM 107 (278)
T ss_dssp EEECHHHHHHHHHHSS------SCSCHHHHHHHHHHTTCSEEEEECCT-TCSSSCHHHHHHHHHHCSSCEEEEECSSHHH
T ss_pred EechHhhhhhhccCCC------CCCCHHHHHHHHHHcCCCEEEeccCC-CcccCCHHHHHHHHHHcCCCEEeecCCCHHH
Confidence 4445556666653111 11255556666789999999999763 23333 2444455543 56777777764322
Q ss_pred HHHHHhhc-cCCEEEEEeecCC---C-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEE
Q 023494 179 SAIECVLD-VVDLVLIMSVNPG---F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 179 e~~~~~l~-~vD~IlvmsV~pG---~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~Vv 253 (281)
+.-.++ .+|.|.+..-.+. . +|-.+ ..-.++|+.+.+.+.+.|..+-+=+| =.++.+....+.|||.+=+
T Consensus 108 --i~ial~~kP~~vtLVPEkreE~TTegGlDv-~~~~~~L~~~i~~L~~~GIrVSLFID--pd~~qI~aA~~~GAd~IEL 182 (278)
T 3gk0_A 108 --LDIACEIRPHDACLVPEKRSELTTEGGLDV-VGHFDAVRAACKQLADAGVRVSLFID--PDEAQIRAAHETGAPVIEL 182 (278)
T ss_dssp --HHHHHHHCCSEEEECCCSGGGBCSSSSBCT-TTTHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHHTCSEEEE
T ss_pred --HHHHHHcCCCEEEECCCCCCCcCCCcchhh-hccHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEE
Confidence 322233 4789877432221 1 23222 23356677766666666544445566 3466899999999999988
Q ss_pred c
Q 023494 254 G 254 (281)
Q Consensus 254 G 254 (281)
=
T Consensus 183 h 183 (278)
T 3gk0_A 183 H 183 (278)
T ss_dssp C
T ss_pred e
Confidence 4
|
| >3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.63 E-value=1 Score=38.84 Aligned_cols=130 Identities=14% Similarity=0.078 Sum_probs=78.2
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCC-CeeEEEEe-----cChh-
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDL-PLDVHLMI-----VEPE- 128 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~-~idaHLmv-----~dp~- 128 (281)
+|..++.+.....+++.++.+.+.|.|.+++-..+.+......+....++++++. .++ .+.+|.-. .||.
T Consensus 3 klg~~~~~~~~~~~~~~~~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~h~~~~~~l~s~~~~ 82 (270)
T 3aam_A 3 RYGFHLSIAGKKGVAGAVEEATALGLTAFQIFAKSPRSWRPRALSPAEVEAFRALREASGGLPAVIHASYLVNLGAEGEL 82 (270)
T ss_dssp EEEEBCCCCSTTHHHHHHHHHHHHTCSCEEEESSCTTCCSCCCCCHHHHHHHHHHHHHTTCCCEEEECCTTCCTTCSSTH
T ss_pred eeeeccccCCCccHHHHHHHHHHcCCCEEEEeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCceEEEecCcccCCCCCHHH
Confidence 5666666554446899999999999999988221111111122334455555442 455 66777421 1442
Q ss_pred ---------hHHHHHHHcCCCEEEEccccc----ccccHHHHHHHHH-HcCCcEEEEECCC------CCHHHHHHhhccC
Q 023494 129 ---------QRVPDFIKAGADIVSVHCEQS----STIHLHRTLNQIK-DLGAKAGVVLNPA------TSLSAIECVLDVV 188 (281)
Q Consensus 129 ---------~~i~~~~~aGAd~Itvh~Ea~----~~~~i~~~l~~ik-~~G~k~Glai~p~------t~ie~~~~~l~~v 188 (281)
+.++.+.+.|+..+.+|.-.. ..+.+.++.+.++ +.|+++++--.+. +..+.+..+++.+
T Consensus 83 r~~~~~~~~~~i~~a~~lGa~~vv~h~g~~~~~~~~~~l~~l~~~a~~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~v 162 (270)
T 3aam_A 83 WEKSVASLADDLEKAALLGVEYVVVHPGSGRPERVKEGALKALRLAGVRSRPVLLVENTAGGGEKVGARFEELAWLVADT 162 (270)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECCCBSCHHHHHHHHHHHHHHHTCCSSSEEEEECCCCCTTBSCCSHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHhhcccCCCEEEEecCCCCCCccCCCHHHHHHHHHhC
Confidence 235556788999999996421 0123555666666 6788888865532 2567777777766
|
| >2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.63 E-value=1.8 Score=35.36 Aligned_cols=84 Identities=12% Similarity=0.120 Sum_probs=48.4
Q ss_pred HHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEecCC
Q 023494 159 NQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV 235 (281)
Q Consensus 159 ~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDGGI 235 (281)
..++..|.++- .+....|.+.+.+.+. .+|+|.+-+... ..++.++++.+.+.+.+. +++|.|.|.+
T Consensus 40 ~~l~~~G~eVi-~lG~~~p~e~lv~aa~~~~~diV~lS~~~~---------~~~~~~~~~i~~L~~~g~~~i~v~vGG~~ 109 (161)
T 2yxb_A 40 RALRDAGFEVV-YTGLRQTPEQVAMAAVQEDVDVIGVSILNG---------AHLHLMKRLMAKLRELGADDIPVVLGGTI 109 (161)
T ss_dssp HHHHHTTCEEE-CCCSBCCHHHHHHHHHHTTCSEEEEEESSS---------CHHHHHHHHHHHHHHTTCTTSCEEEEECC
T ss_pred HHHHHCCCEEE-ECCCCCCHHHHHHHHHhcCCCEEEEEeech---------hhHHHHHHHHHHHHhcCCCCCEEEEeCCC
Confidence 34556676654 2333456665555443 478777643321 122333333333333443 5788888888
Q ss_pred ChhcHHHHHHcCCcEEE
Q 023494 236 GPKNAYKVIEAGANALV 252 (281)
Q Consensus 236 ~~e~i~~~~~aGAD~~V 252 (281)
..+....+.+.|+|.+.
T Consensus 110 ~~~~~~~l~~~G~d~v~ 126 (161)
T 2yxb_A 110 PIPDLEPLRSLGIREIF 126 (161)
T ss_dssp CHHHHHHHHHTTCCEEE
T ss_pred chhcHHHHHHCCCcEEE
Confidence 77777788899999654
|
| >3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A* | Back alignment and structure |
|---|
Probab=92.62 E-value=1 Score=41.42 Aligned_cols=119 Identities=21% Similarity=0.244 Sum_probs=71.6
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccc-----cc--c---cCC----------HHHHHHcCcCC--CCCeeEEEEec------
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFV-----PN--I---TIG----------PLVVDALRPVT--DLPLDVHLMIV------ 125 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fv-----pn--~---~~G----------~~~I~~ir~~t--~~~idaHLmv~------ 125 (281)
++.+.+.++|.|.|+|..-.|-.+ |+ . .+| .++++++|+.. +.|+-+.|=..
T Consensus 156 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g 235 (349)
T 3hgj_A 156 EGARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGG 235 (349)
T ss_dssp HHHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTS
T ss_pred HHHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCC
Confidence 444566789999988876554221 32 1 334 67888998864 56777766543
Q ss_pred -Ch---hhHHHHHHHcCCCEEEEccc-ccc-------cccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc--CCE
Q 023494 126 -EP---EQRVPDFIKAGADIVSVHCE-QSS-------TIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV--VDL 190 (281)
Q Consensus 126 -dp---~~~i~~~~~aGAd~Itvh~E-a~~-------~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~--vD~ 190 (281)
++ .++++.+.++|+|+++++.- ... .....+.++.+|+. ++ ..++..--+..+..++++.. +|.
T Consensus 236 ~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~i-PVi~~Ggi~t~e~a~~~l~~G~aD~ 314 (349)
T 3hgj_A 236 WSLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVGL-RTGAVGLITTPEQAETLLQAGSADL 314 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHCC-EEEECSSCCCHHHHHHHHHTTSCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcCc-eEEEECCCCCHHHHHHHHHCCCceE
Confidence 22 23466778899999999941 000 11123566777764 33 22232222466777777664 899
Q ss_pred EEE
Q 023494 191 VLI 193 (281)
Q Consensus 191 Ilv 193 (281)
|.+
T Consensus 315 V~i 317 (349)
T 3hgj_A 315 VLL 317 (349)
T ss_dssp EEE
T ss_pred EEe
Confidence 976
|
| >1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1 | Back alignment and structure |
|---|
Probab=92.57 E-value=1.2 Score=40.09 Aligned_cols=96 Identities=14% Similarity=0.123 Sum_probs=53.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc---c---cCC---HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---I---TIG---PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---~---~~G---~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|+....+..+.+.+.|+|+| ||-=-..-|. + ..- ..+++.+++. +.|+-+ =+.+|. .++.+.++|
T Consensus 27 ~~~~a~~~a~~~v~~GAdiI--DIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~-~~piSI--DT~~~~-va~aAl~aG 100 (280)
T 1eye_A 27 DLDDAVKHGLAMAAAGAGIV--DVGGESSRPGATRVDPAVETSRVIPVVKELAAQ-GITVSI--DTMRAD-VARAALQNG 100 (280)
T ss_dssp SHHHHHHHHHHHHHTTCSEE--EEECC--------------HHHHHHHHHHHHHT-TCCEEE--ECSCHH-HHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCCCCEE--EECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC-CCEEEE--eCCCHH-HHHHHHHcC
Confidence 33344445566778899986 4431111132 1 111 2334445443 566555 345655 677888999
Q ss_pred CCEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 139 Ad~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+++|- +..+.. . .+.++.++++|+.+.+.-+
T Consensus 101 a~iINdvsg~~~-d---~~m~~~~a~~~~~vVlmh~ 132 (280)
T 1eye_A 101 AQMVNDVSGGRA-D---PAMGPLLAEADVPWVLMHW 132 (280)
T ss_dssp CCEEEETTTTSS-C---TTHHHHHHHHTCCEEEECC
T ss_pred CCEEEECCCCCC-C---HHHHHHHHHhCCeEEEEcC
Confidence 99884 333321 1 2567788899998887654
|
| >2oz8_A MLL7089 protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.48A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.46 Score=44.27 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=77.3
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
+|+.+.+ .+.+.|.+.+=+|.-..+.+...+.++++|+. ++.+.+..|.....+...++++. .+...+
T Consensus 145 ~~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~~~~l~vDan~~~~~~~a~~~~~~l~~~g~~i~~i- 223 (389)
T 2oz8_A 145 DDDAFVSLFSHAASIGYSAFKIKVGHRDFDRDLRRLELLKTCVPAGSKVMIDPNEAWTSKEALTKLVAIREAGHDLLWV- 223 (389)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEEECCCSSHHHHHHHHHHHHTTSCTTCEEEEECTTCBCHHHHHHHHHHHHHTTCCCSEE-
T ss_pred CHHHHHHHHHHHHHhCCCEEEEccCCCCHHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCceEE-
Confidence 6666644 45678999999986421123345677788873 46677788877777655554432 222111
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEEEc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++-.+++++... +++|..|+.++++.+..+++.| +|++.++
T Consensus 224 -------EqP~~~~~~~~~~~l~~~~~----~iPIa~dE~~~~~~~~~~i~~~~~d~v~ik 273 (389)
T 2oz8_A 224 -------EDPILRHDHDGLRTLRHAVT----WTQINSGEYLDLQGKRLLLEAHAADILNVH 273 (389)
T ss_dssp -------ESCBCTTCHHHHHHHHHHCC----SSEEEECTTCCHHHHHHHHHTTCCSEEEEC
T ss_pred -------eCCCCCcCHHHHHHHHhhCC----CCCEEeCCCCCHHHHHHHHHcCCCCEEEEC
Confidence 35665656666666665431 4799999999888888888877 8999997
|
| >4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=92.43 E-value=0.87 Score=44.02 Aligned_cols=124 Identities=21% Similarity=0.131 Sum_probs=73.3
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
.+..+.++.+.++|+|.+++|...|+.. .-.+.++++|+. ++.++.+ --+.++ +..+.+.++|||.|.+....
T Consensus 228 ~~~~~~a~~l~~aG~d~I~id~a~g~~~----~~~~~v~~i~~~~p~~~Vi~-g~v~t~-e~a~~l~~aGaD~I~vg~g~ 301 (490)
T 4avf_A 228 ADTGERVAALVAAGVDVVVVDTAHGHSK----GVIERVRWVKQTFPDVQVIG-GNIATA-EAAKALAEAGADAVKVGIGP 301 (490)
T ss_dssp TTHHHHHHHHHHTTCSEEEEECSCCSBH----HHHHHHHHHHHHCTTSEEEE-EEECSH-HHHHHHHHTTCSEEEECSSC
T ss_pred cchHHHHHHHhhcccceEEecccCCcch----hHHHHHHHHHHHCCCceEEE-eeeCcH-HHHHHHHHcCCCEEEECCCC
Confidence 3556778888899999999997776421 224678888875 3666655 113444 36778899999999983211
Q ss_pred cc-----------ccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC
Q 023494 149 SS-----------TIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199 (281)
Q Consensus 149 ~~-----------~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG 199 (281)
.+ ..+ +.++.+.+++.++.+..+=.-.++-+..+.+...+|.|++.+...|
T Consensus 302 Gs~~~t~~~~g~g~p~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vGs~~~~ 366 (490)
T 4avf_A 302 GSICTTRIVAGVGVPQISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMGSMFAG 366 (490)
T ss_dssp STTCHHHHHTCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CcCCCccccCCCCccHHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeecHHHhc
Confidence 00 112 2334444444565554432223344433334446999988654433
|
| >1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A* | Back alignment and structure |
|---|
Probab=92.36 E-value=1.7 Score=38.26 Aligned_cols=128 Identities=16% Similarity=0.268 Sum_probs=78.4
Q ss_pred cChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHH-cCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC--
Q 023494 125 VEPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKD-LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG-- 199 (281)
Q Consensus 125 ~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~-~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG-- 199 (281)
-||.+....+.++|||+||+|.-. +..|+. +-+..+++ ...+.-+-.+|.... +.-.++ .++.|.+..-.+.
T Consensus 25 Pdpv~aA~~ae~aGAdgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em--i~ia~~~kP~~vtLVPE~r~e~ 101 (243)
T 1m5w_A 25 PDPVQAAFIAEQAGADGITVHLRE-DRRHITDRDVRILRQTLDTRMNLEMAVTEEM--LAIAVETKPHFCCLVPEKRQEV 101 (243)
T ss_dssp SCHHHHHHHHHTTTCSEEEEECCT-TCSSSCHHHHHHHHHHCSSEEEEEECSSHHH--HHHHHHHCCSEEEECCCCSSCS
T ss_pred CCHHHHHHHHHHcCCCEEEeCCCC-CcccCCHHHHHHHHHhcCCCEEeccCCCHHH--HHHHHHcCCCEEEECCCCCCCc
Confidence 356666667789999999999763 223322 33444443 355777777764322 222222 4789877533221
Q ss_pred -C-CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 200 -F-GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 200 -~-~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
. +|-.+ ..-.++|+.+.+.+.+.|..+-+-+| =.++.+....+.|||.+=+=+.=|
T Consensus 102 TTegGldv-~~~~~~l~~~i~~L~~~GIrVSLFID--pd~~qi~aA~~~GA~~IELhTG~Y 159 (243)
T 1m5w_A 102 TTEGGLDV-AGQRDKMRDACKRLADAGIQVSLFID--ADEEQIKAAAEVGAPFIEIHTGCY 159 (243)
T ss_dssp SCCSCCCS-GGGHHHHHHHHHHHHHTTCEEEEEEC--SCHHHHHHHHHTTCSEEEEECHHH
T ss_pred CCCcchhH-HhhHHHHHHHHHHHHHCCCEEEEEeC--CCHHHHHHHHHhCcCEEEEechhh
Confidence 1 23333 34467788777777776644445567 356789999999999887665443
|
| >3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=92.31 E-value=0.65 Score=40.97 Aligned_cols=111 Identities=15% Similarity=0.187 Sum_probs=65.8
Q ss_pred HHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHc--C--CcEEEEECCCCCHHHHHHhh---c--cCCEEEEEee
Q 023494 131 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL--G--AKAGVVLNPATSLSAIECVL---D--VVDLVLIMSV 196 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~--G--~k~Glai~p~t~ie~~~~~l---~--~vD~IlvmsV 196 (281)
.+.+.+.|||-|-+|..-. ..+.+.+.++.+++. + +|+.+....= ..+.+.... . .+|+|=.
T Consensus 101 a~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L-t~eei~~a~~ia~~aGADfVKT--- 176 (239)
T 3ngj_A 101 TKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYL-TNEEKVEVCKRCVAAGAEYVKT--- 176 (239)
T ss_dssp HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGS-CHHHHHHHHHHHHHHTCSEEEC---
T ss_pred HHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCC-CHHHHHHHHHHHHHHCcCEEEC---
Confidence 5567889999999996531 112244444444443 3 2332222111 223333331 1 3799842
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
-.||+. ...+++.++.+|+.... ++.|-+.|||+ .+++..++++||+-+
T Consensus 177 STGf~~---ggAt~~dv~lmr~~vg~---~v~VKasGGIrt~~da~~~i~aGA~ri 226 (239)
T 3ngj_A 177 STGFGT---HGATPEDVKLMKDTVGD---KALVKAAGGIRTFDDAMKMINNGASRI 226 (239)
T ss_dssp CCSSSS---CCCCHHHHHHHHHHHGG---GSEEEEESSCCSHHHHHHHHHTTEEEE
T ss_pred CCCCCC---CCCCHHHHHHHHHhhCC---CceEEEeCCCCCHHHHHHHHHhcccce
Confidence 335531 12456677777777643 47888999999 789999999999943
|
| >1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.27 E-value=2.8 Score=37.19 Aligned_cols=182 Identities=12% Similarity=0.126 Sum_probs=103.8
Q ss_pred ceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc------cCCHHHHHHcCcC---CCCCeeEEEEecCh
Q 023494 58 IIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI------TIGPLVVDALRPV---TDLPLDVHLMIVEP 127 (281)
Q Consensus 58 ~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~------~~G~~~I~~ir~~---t~~~idaHLmv~dp 127 (281)
+.+.+...+. |.....+.++.+.++|++.+-. +.|-|.. .+|.+..+.++++ .++|+... +-||
T Consensus 24 ~~vIAgpc~~~~~e~a~~~a~~l~~~Ga~~vk~----~~fkprts~~~~~g~~~egl~~l~~~~~~~Gl~~~te--~~d~ 97 (262)
T 1zco_A 24 FTIIAGPCSIESREQIMKVAEFLAEVGIKVLRG----GAFKPRTSPYSFQGYGEKALRWMREAADEYGLVTVTE--VMDT 97 (262)
T ss_dssp CEEEEECSBCCCHHHHHHHHHHHHHTTCCEEEC----BSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEE--CCCG
T ss_pred cEEEEeCCCCCCHHHHHHHHHHHHHcCCCEEEE----EecccCCCcccccCccHHHHHHHHHHHHHcCCcEEEe--eCCH
Confidence 4444444332 4444556667788999987544 4555432 2235555555543 56776663 3455
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc------cCCEEEEEe---ecC
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD------VVDLVLIMS---VNP 198 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~------~vD~Ilvms---V~p 198 (281)
.. ++.+.+. +|++-+.... ..+ ..+++++-+.|+-+++.-...-.++++..-++ .-+.+++.. ..+
T Consensus 98 ~~-~~~l~~~-vd~~kIga~~--~~n-~~ll~~~a~~~kPV~lk~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~RG~~~~~ 172 (262)
T 1zco_A 98 RH-VELVAKY-SDILQIGARN--SQN-FELLKEVGKVENPVLLKRGMGNTIQELLYSAEYIMAQGNENVILCERGIRTFE 172 (262)
T ss_dssp GG-HHHHHHH-CSEEEECGGG--TTC-HHHHHHHTTSSSCEEEECCTTCCHHHHHHHHHHHHTTTCCCEEEEECCBCCSC
T ss_pred Hh-HHHHHhh-CCEEEECccc--ccC-HHHHHHHHhcCCcEEEecCCCCCHHHHHHHHHHHHHCCCCeEEEEECCCCCCC
Confidence 43 5566677 8999999874 233 34677777789999998776634544433332 135555441 112
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe----cCCCh---hcHHHHHHcCCcEEEEccccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD----GGVGP---KNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD----GGI~~---e~i~~~~~aGAD~~VvGSaIf 258 (281)
++ +...-.+..+..+++.. +++|.+| +|... ......+..|||++++=+-+.
T Consensus 173 ~y---~~~~v~L~ai~~lk~~~-----~~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~~ 231 (262)
T 1zco_A 173 TA---TRFTLDISAVPVVKELS-----HLPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHPE 231 (262)
T ss_dssp CS---SSSBCCTTHHHHHHHHB-----SSCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred Cc---ChhhcCHHHHHHHHhhh-----CCCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence 22 22222244555666542 3566554 33322 335567889999999998854
|
| >3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* | Back alignment and structure |
|---|
Probab=92.26 E-value=1.2 Score=43.34 Aligned_cols=116 Identities=16% Similarity=0.222 Sum_probs=76.8
Q ss_pred hhHHHHHHHcCCCEEEEccccc---ccccHHHHHHHHHH-------c-CCcEEEEECCCC-CHHHHHHhhc-cCCEEEEE
Q 023494 128 EQRVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKD-------L-GAKAGVVLNPAT-SLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~---~~~~i~~~l~~ik~-------~-G~k~Glai~p~t-~ie~~~~~l~-~vD~Ilvm 194 (281)
.+..+.+.+.+...+.|--|.. ...+.+.+++.+.. . ...+++.+.... ..++++.+++ .+|.|.+-
T Consensus 196 ~eal~~m~~~~i~~lpVVDe~g~l~GiIT~~Dil~~~~~p~a~~D~~~rl~V~aavg~~~d~~era~aLveaGvd~I~Id 275 (511)
T 3usb_A 196 SEAEKILQKYKIEKLPLVDNNGVLQGLITIKDIEKVIEFPNSAKDKQGRLLVGAAVGVTADAMTRIDALVKASVDAIVLD 275 (511)
T ss_dssp HHHHHHHHHHTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCEeeeccHHHHHHhhhcccchhhhccceeeeeeeeeccchHHHHHHHHhhccceEEec
Confidence 3456677888888887765532 12356777777654 1 235677776543 3566666666 48998876
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvG 254 (281)
+.++. ....++.|+++++..+ +.++. .|+| +.+.+..+.++|||.+++|
T Consensus 276 ~a~g~------~~~v~~~i~~i~~~~~----~~~vi-~g~v~t~e~a~~~~~aGad~i~vg 325 (511)
T 3usb_A 276 TAHGH------SQGVIDKVKEVRAKYP----SLNII-AGNVATAEATKALIEAGANVVKVG 325 (511)
T ss_dssp CSCTT------SHHHHHHHHHHHHHCT----TSEEE-EEEECSHHHHHHHHHHTCSEEEEC
T ss_pred ccccc------hhhhhhHHHHHHHhCC----CceEE-eeeeccHHHHHHHHHhCCCEEEEC
Confidence 55432 2356777888887653 24564 4455 5889999999999999985
|
| >3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A | Back alignment and structure |
|---|
Probab=92.25 E-value=1.9 Score=37.67 Aligned_cols=170 Identities=17% Similarity=0.207 Sum_probs=92.9
Q ss_pred EeEEEeccCc--cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-------h-
Q 023494 60 VSPSILSANF--AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-------Q- 129 (281)
Q Consensus 60 i~pSila~D~--~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-------~- 129 (281)
|-=++|.-|. .++++.++.+.+.|...+-+ .|.+++..+...+..+.++.-+.=|. +
T Consensus 17 IDhTlL~p~~t~~~i~~lc~eA~~~~~~aVcV-------------~p~~v~~a~~l~~~~v~v~tVigFP~G~~~~~~K~ 83 (231)
T 3ndo_A 17 VDHTLLKPEATPSDVTALVDEAADLGVFAVCV-------------SPPLVSVAAGVAPSGLAIAAVAGFPSGKHVPGIKA 83 (231)
T ss_dssp EEEECCCTTCCHHHHHHHHHHHHHHTCSEEEE-------------CGGGHHHHHHHCCTTCEEEEEESTTTCCSCHHHHH
T ss_pred cCcccCCCCCCHHHHHHHHHHHHHhCCcEEEE-------------CHHHHHHHHHhcCCCCeEEEEecCCCCCCcHHHHH
Confidence 4444544332 24445555666677766543 22233332211234466666665442 1
Q ss_pred -HHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHc--CCcEEEEECC------CCCHHHHHHh---hc--cCCE
Q 023494 130 -RVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL--GAKAGVVLNP------ATSLSAIECV---LD--VVDL 190 (281)
Q Consensus 130 -~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~--G~k~Glai~p------~t~ie~~~~~---l~--~vD~ 190 (281)
-.+.+.+.|||-|-++..-. ..+.+.+.++.+++. |..+=+.+.. .|+ +.+... .. .+|+
T Consensus 84 ~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~-eei~~a~~ia~~aGADf 162 (231)
T 3ndo_A 84 TEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGE-PLLADVCRVARDAGADF 162 (231)
T ss_dssp HHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCH-HHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCH-HHHHHHHHHHHHHCcCE
Confidence 25567899999999996531 112344455555554 3322222221 122 222222 21 3798
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
|= ..-||.. ....+++.++.+++... .++.|-+.|||+ .+++..++++||+-+
T Consensus 163 VK---TSTGf~~--~~gAt~edv~lm~~~v~---~~v~VKaaGGIrt~~~a~~~i~aGa~Ri 216 (231)
T 3ndo_A 163 VK---TSTGFHP--SGGASVQAVEIMARTVG---ERLGVKASGGIRTAEQAAAMLDAGATRL 216 (231)
T ss_dssp EE---CCCSCCT--TCSCCHHHHHHHHHHHT---TTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred EE---cCCCCCC--CCCCCHHHHHHHHHHhC---CCceEEEeCCCCCHHHHHHHHHhcchhc
Confidence 84 2335530 12345677777777764 357899999999 789999999999943
|
| >3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.55 Score=40.95 Aligned_cols=124 Identities=15% Similarity=0.127 Sum_probs=76.0
Q ss_pred ceEeEEEecc---------CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEec--C
Q 023494 58 IIVSPSILSA---------NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV--E 126 (281)
Q Consensus 58 ~~i~pSila~---------D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~--d 126 (281)
++|+-+.++. ....+++.++.+.+.|.+.|++. + +.| .+..++++-+..++.+.++.... +
T Consensus 10 mklg~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~---~-~~~----~~~~~~~~l~~~gl~~~~~~~~~~~~ 81 (301)
T 3cny_A 10 IKWGIAPIGWRNDDIPSIGKDNNLQQLLSDIVVAGFQGTEVG---G-FFP----GPEKLNYELKLRNLEIAGQWFSSYII 81 (301)
T ss_dssp EEEEECGGGTCCSSSTTTTTTCCHHHHHHHHHHHTCCEECCC---T-TCC----CHHHHHHHHHHTTCEECEEEEEECHH
T ss_pred eeEEeccccccCccccccccCCCHHHHHHHHHHhCCCEEEec---C-CCC----CHHHHHHHHHHCCCeEEEEeccCCCC
Confidence 4566555555 23578999999999999998774 2 223 34444444333566666652221 1
Q ss_pred h----------hhHHHHHHHcCCCEEEEcc-------cc-c--c--------------cccHHHHHHHHHHcCCcEEEEE
Q 023494 127 P----------EQRVPDFIKAGADIVSVHC-------EQ-S--S--------------TIHLHRTLNQIKDLGAKAGVVL 172 (281)
Q Consensus 127 p----------~~~i~~~~~aGAd~Itvh~-------Ea-~--~--------------~~~i~~~l~~ik~~G~k~Glai 172 (281)
| .+.++.+.+.|++.|.+|. .. . + .+.+.++.+.++++|+++++--
T Consensus 82 ~~~~~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~ 161 (301)
T 3cny_A 82 RDGIEKASEAFEKHCQYLKAINAPVAVVSEQTYTIQRSDTANIFKDKPYFTDKEWDEVCKGLNHYGEIAAKYGLKVAYHH 161 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEEEECTTCCTTCSSCCTTTCCCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEEC
T ss_pred hhhHHHHHHHHHHHHHHHHHcCCCEEEecCCCccccCcccCCcccccccCcHHHHHHHHHHHHHHHHHHHHcCCEEEEec
Confidence 2 1345566789999999984 10 0 0 1124566677788999988876
Q ss_pred CCC---CCHHHHHHhhccCC
Q 023494 173 NPA---TSLSAIECVLDVVD 189 (281)
Q Consensus 173 ~p~---t~ie~~~~~l~~vD 189 (281)
.+. ...+.+..+++.++
T Consensus 162 ~~~~~~~~~~~~~~l~~~~~ 181 (301)
T 3cny_A 162 HMGTGIQTKEETDRLMANTD 181 (301)
T ss_dssp CTTSSSCSHHHHHHHHHTSC
T ss_pred CCCcccCCHHHHHHHHHhCC
Confidence 554 34566777777654
|
| >1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A | Back alignment and structure |
|---|
Probab=92.22 E-value=0.41 Score=43.20 Aligned_cols=95 Identities=19% Similarity=0.181 Sum_probs=54.3
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCccccc------ccC---CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPN------ITI---GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn------~~~---G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+....+..+.+.+.|+|+| ||-=-..=|. ... =..+++.+++.++.|+-+ =+.+|. .++.+.++|+
T Consensus 37 ~~~a~~~a~~~v~~GAdiI--DIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~~~piSI--DT~~~~-va~aAl~aGa 111 (282)
T 1aj0_A 37 LIDAVKHANLMINAGATII--DVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRFEVWISV--DTSKPE-VIRESAKVGA 111 (282)
T ss_dssp HHHHHHHHHHHHHHTCSEE--EEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHCCCEEEE--ECCCHH-HHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCCEE--EECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhcCCeEEE--eCCCHH-HHHHHHHcCC
Confidence 3344445566677899986 4432111132 101 123455555544555544 345554 6778889999
Q ss_pred CEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 140 DIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 140 d~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
++|- +..+. . .+.++.++++|..+.+.-+
T Consensus 112 ~iINdvsg~~--d---~~~~~~~a~~~~~vVlmh~ 141 (282)
T 1aj0_A 112 HIINDIRSLS--E---PGALEAAAETGLPVCLMHM 141 (282)
T ss_dssp CEEEETTTTC--S---TTHHHHHHHHTCCEEEECC
T ss_pred CEEEECCCCC--C---HHHHHHHHHhCCeEEEEcc
Confidence 9884 33331 2 2567778889988887654
|
| >1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A* | Back alignment and structure |
|---|
Probab=92.14 E-value=3.7 Score=37.40 Aligned_cols=181 Identities=15% Similarity=0.238 Sum_probs=112.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
++..+.-.++.+++.+...| +-+-.|. |.+ ..+-..+++...+ .+.|+-+||==..-.+.+..+.++|.+.|-+=
T Consensus 26 n~e~~~Ail~AAee~~sPvI-lq~s~g~~~y~g-~~~~~~~v~~~a~-~~VPValHlDHg~~~e~~~~ai~~GFtSVMiD 102 (305)
T 1rvg_A 26 NMEFLQAVLEAAEEQRSPVI-LALSEGAMKYGG-RALTLMAVELAKE-ARVPVAVHLDHGSSYESVLRALRAGFTSVMID 102 (305)
T ss_dssp SHHHHHHHHHHHHHTTCCEE-EEEEHHHHHHHH-HHHHHHHHHHHHH-CSSCEEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred CHHHHHHHHHHHHHhCCCEE-EECChhHHhhCC-HHHHHHHHHHHHh-CCCcEEEECCCCCCHHHHHHHHHcCCCeeeeC
Confidence 33344456677777777765 5444442 221 1111234555555 77999999976544557788899998888765
Q ss_pred ccccc----cccHHHHHHHHHHcCCcEEEEE--------------C--CCCCHHHHHHhhc--cCCEEEE--EeecCCCC
Q 023494 146 CEQSS----TIHLHRTLNQIKDLGAKAGVVL--------------N--PATSLSAIECVLD--VVDLVLI--MSVNPGFG 201 (281)
Q Consensus 146 ~Ea~~----~~~i~~~l~~ik~~G~k~Glai--------------~--p~t~ie~~~~~l~--~vD~Ilv--msV~pG~~ 201 (281)
.-..+ ...-+++++.+++.|+-+-.-| + .-|..+...++.+ .+|.+.+ .++|--+.
T Consensus 103 gS~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~TgvD~LAvaiGt~HG~Yk 182 (305)
T 1rvg_A 103 KSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGTSHGAYK 182 (305)
T ss_dssp CTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSCCSSSBC
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHHHCCCEEEEecCccccccC
Confidence 43222 1234577888888887652211 1 1277777888776 4897654 23331122
Q ss_pred --CCccchhHHHHHHHHHHHhhhcCCCCeEEEec-----------------------CCChhcHHHHHHcCCcEEEEccc
Q 023494 202 --GQSFIESQVKKISDLRRMCLEKGVNPWIEVDG-----------------------GVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 202 --GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG-----------------------GI~~e~i~~~~~aGAD~~VvGSa 256 (281)
|.+ .-.+++|+++++.+ ++++..=| |+..+.++++++.|+.-+=+++.
T Consensus 183 ~~g~p--~L~~~~L~~I~~~~-----~vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~~GV~KiNi~Td 255 (305)
T 1rvg_A 183 GKGRP--FIDHARLERIARLV-----PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKINTDTD 255 (305)
T ss_dssp SSSSC--CCCHHHHHHHHHHC-----CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEEEECHH
T ss_pred CCCCC--ccCHHHHHHHHHhc-----CCCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHHHHHHCCCeEEEEChH
Confidence 221 12256667776654 37888877 66789999999999999999987
Q ss_pred cc
Q 023494 257 VF 258 (281)
Q Consensus 257 If 258 (281)
+.
T Consensus 256 l~ 257 (305)
T 1rvg_A 256 LR 257 (305)
T ss_dssp HH
T ss_pred HH
Confidence 63
|
| >1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7 | Back alignment and structure |
|---|
Probab=92.12 E-value=0.85 Score=39.34 Aligned_cols=127 Identities=14% Similarity=0.045 Sum_probs=78.3
Q ss_pred ceEeEEEeccCc-----cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE----e----
Q 023494 58 IIVSPSILSANF-----AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM----I---- 124 (281)
Q Consensus 58 ~~i~pSila~D~-----~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm----v---- 124 (281)
++|+-|.++... ..+++.++.+.+.|.+.+++-.. .+.| .. ....+++..+..++.+..|-- .
T Consensus 6 ~kl~~~~~~~~~~~~~~~~~~~~l~~a~~~G~~~vEl~~~--~~~~-~~-~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~ 81 (264)
T 1yx1_A 6 HPVSISLSSYGADLVRSRGQASFLPLLAMAGAQRVELREE--LFAG-PP-DTEALTAAIQLQGLECVFSSPLELWREDGQ 81 (264)
T ss_dssp CCEEEEGGGGCHHHHHHHCGGGGHHHHHHHTCSEEEEEGG--GCSS-CC-CHHHHHHHHHHTTCEEEEEEEEEEECTTSS
T ss_pred CceeeechhhcchhccCcCHHHHHHHHHHcCCCEEEEEHH--hcCC-CH-HHHHHHHHHHHcCCEEEEecchhhcCCchh
Confidence 456666666533 24577899999999999988522 2222 12 344444433335666555421 1
Q ss_pred --cChhhHHHHHHHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCCC---CHHHHHHhhccC
Q 023494 125 --VEPEQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPAT---SLSAIECVLDVV 188 (281)
Q Consensus 125 --~dp~~~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t---~ie~~~~~l~~v 188 (281)
..-.+.++.+.+.|+..|.+|.-.. ....+.++.+.++++|+++++--.+.+ ..+.+..+++.+
T Consensus 82 ~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~ll~~v 151 (264)
T 1yx1_A 82 LNPELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLA 151 (264)
T ss_dssp BCTTHHHHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHHHHHhcCCEEEEecCCCCCCCCHHHHHHHHHHH
Confidence 1122456777889999999985421 123688889999999999888755432 345566666554
|
| >2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A | Back alignment and structure |
|---|
Probab=92.07 E-value=0.39 Score=47.57 Aligned_cols=121 Identities=11% Similarity=0.127 Sum_probs=80.3
Q ss_pred HHHHcCCCEEEEcccccccccH---HHHHHHHHH----cC------CcEEEEECCCCCHHHHHHhhccCCEEEEEeecC-
Q 023494 133 DFIKAGADIVSVHCEQSSTIHL---HRTLNQIKD----LG------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP- 198 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~~i---~~~l~~ik~----~G------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p- 198 (281)
.+.+.|+..|-|+.-. +.+++ .+.++.++. .| .++|+.+....-+..+.+++..+|++.+.+.+-
T Consensus 381 rA~~~G~~~Im~PmV~-s~~E~~~a~~~v~~~~~~l~~~G~~~~~~~~vg~MIE~P~a~~~ad~ia~~vDf~siGtNDLt 459 (572)
T 2wqd_A 381 RASVYGKLNIMFPMVA-TINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLI 459 (572)
T ss_dssp HHTTTSCEEEEESCCC-SHHHHHHHHHHHHHHHHHHHHHTCCCCSCCEEEEEECCHHHHHTHHHHHHHCSEEEECHHHHH
T ss_pred HHHhcCCCEEEEeCCC-CHHHHHHHHHHHHHHHHHHHhcCCCCCCCcEEEEEEccHHHHHHHHHHHHhCCEEEECHHHHH
Confidence 3445677788887654 24453 334444443 24 567888854434466777777799998854321
Q ss_pred -------------CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEccc
Q 023494 199 -------------GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 199 -------------G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSa 256 (281)
+..+++|.|.++.-|+.+.+-.... +.++.|=|. -+++.++.++..|.|.+.++..
T Consensus 460 Q~~lg~dR~~~~v~~~~dp~~paVl~li~~vv~aa~~~--g~~vgiCGe~agdp~~~~~l~~lG~~~~S~~p~ 530 (572)
T 2wqd_A 460 QYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKE--GKWTGMCGEMAGDETAIPLLLGLGLDEFSMSAT 530 (572)
T ss_dssp HHHHTCCSSSGGGGGGCCTTCHHHHHHHHHHHHHHHHT--TCEEEECSGGGGCTTTHHHHHHHTCCEEEECHH
T ss_pred HHHhccCCCccccccccCCCCHHHHHHHHHHHHHHHHh--CCeEEEeCCccCCHHHHHHHHHCCCCEEEeccc
Confidence 2235778899988888887776554 467776332 2688999999999999998854
|
| >1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ... | Back alignment and structure |
|---|
Probab=92.05 E-value=0.37 Score=43.85 Aligned_cols=99 Identities=14% Similarity=0.200 Sum_probs=55.7
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCccccc---ccCC------HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---ITIG------PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---~~~G------~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
.....+..+.+.+.|+|+|-|.-.- .=|. .+.. ..+|+.+++..+.|+-+| +.+|+ .++.+.++|+
T Consensus 62 ~~~a~~~a~~~v~~GAdiIDIGgeS--trPga~~v~~~eE~~RvvpvI~~l~~~~~vpiSID--T~~~~-V~~aAl~aGa 136 (297)
T 1tx2_A 62 VDAAVRHAKEMRDEGAHIIDIGGES--TRPGFAKVSVEEEIKRVVPMIQAVSKEVKLPISID--TYKAE-VAKQAIEAGA 136 (297)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEESCC------CCCCCHHHHHHHHHHHHHHHHHHSCSCEEEE--CSCHH-HHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCc--CCCCCCCCCHHHHHHHHHHHHHHHHhcCCceEEEe--CCCHH-HHHHHHHcCC
Confidence 3344445566678899987443111 1122 1111 123355555456777664 35655 5677888899
Q ss_pred CEEE-EcccccccccHHHHHHHHHHcCCcEEEEECCCC
Q 023494 140 DIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176 (281)
Q Consensus 140 d~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t 176 (281)
++|- +-.+. . ..+.++.++++|..+.+.-+..+
T Consensus 137 ~iINdvsg~~---~-d~~m~~~aa~~g~~vVlmh~~G~ 170 (297)
T 1tx2_A 137 HIINDIWGAK---A-EPKIAEVAAHYDVPIILMHNRDN 170 (297)
T ss_dssp CEEEETTTTS---S-CTHHHHHHHHHTCCEEEECCCSC
T ss_pred CEEEECCCCC---C-CHHHHHHHHHhCCcEEEEeCCCC
Confidence 9983 22221 1 23677888999988877765444
|
| >3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=2.8 Score=37.39 Aligned_cols=136 Identities=17% Similarity=0.186 Sum_probs=69.0
Q ss_pred HHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc-CCcEEEEECCCCCHHHH
Q 023494 104 PLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAI 181 (281)
Q Consensus 104 ~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~ 181 (281)
+.+|.++|+. |.+-+.. --.||..+...+.+.||+++++..+..-..--.+.++.+|+. ++.+ +.-..--....+
T Consensus 52 ~~~IaE~K~asPs~g~i~--~~~~p~~~A~~y~~~GA~~isvltd~~~f~Gs~~~l~~ir~~v~lPv-l~kdfiid~~qv 128 (272)
T 3qja_A 52 IGVIAEVKRASPSAGALA--TIADPAKLAQAYQDGGARIVSVVTEQRRFQGSLDDLDAVRASVSIPV-LRKDFVVQPYQI 128 (272)
T ss_dssp CEEEEEEC---------------CHHHHHHHHHHTTCSEEEEECCGGGHHHHHHHHHHHHHHCSSCE-EEESCCCSHHHH
T ss_pred CeEEEEEecCCCCCCccC--CCCCHHHHHHHHHHcCCCEEEEecChhhcCCCHHHHHHHHHhCCCCE-EECccccCHHHH
Confidence 3445566654 2222111 124777788888899999999997631011123466777764 3333 211111111113
Q ss_pred HH-hhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcc
Q 023494 182 EC-VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 182 ~~-~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGS 255 (281)
.+ ..-.+|.|++.... ..+. .++++.+...+.|....++| -+.+.+....++|+|++.++.
T Consensus 129 ~~A~~~GAD~VlLi~a~-------l~~~---~l~~l~~~a~~lGl~~lvev---~t~ee~~~A~~~Gad~IGv~~ 190 (272)
T 3qja_A 129 HEARAHGADMLLLIVAA-------LEQS---VLVSMLDRTESLGMTALVEV---HTEQEADRALKAGAKVIGVNA 190 (272)
T ss_dssp HHHHHTTCSEEEEEGGG-------SCHH---HHHHHHHHHHHTTCEEEEEE---SSHHHHHHHHHHTCSEEEEES
T ss_pred HHHHHcCCCEEEEeccc-------CCHH---HHHHHHHHHHHCCCcEEEEc---CCHHHHHHHHHCCCCEEEECC
Confidence 33 23358999875221 1122 34444444444444433443 357778888899999998873
|
| >4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C* | Back alignment and structure |
|---|
Probab=92.05 E-value=1 Score=43.13 Aligned_cols=135 Identities=16% Similarity=0.156 Sum_probs=79.9
Q ss_pred HHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh
Q 023494 105 LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV 184 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~ 184 (281)
.+++.+++.++.|+.+ .+.||+ -++..++++++..-.-.-+ ..++.++....+.++|..+.+.-+ .++.++++
T Consensus 145 ~vVk~V~e~~dvPL~I--DS~dpe-vleaALea~a~~~plI~sa-t~dn~e~m~~lAa~y~~pVi~~~~---dl~~lkel 217 (446)
T 4djd_C 145 AAVASVAAATQLNLVL--MADDPD-VLKEALAGVADRKPLLYAA-TGANYEAMTALAKENNCPLAVYGN---GLEELAEL 217 (446)
T ss_dssp HHHHHHHTTCCSEEEE--ECSCHH-HHHHHHGGGGGGCCEEEEE-CTTTHHHHHHHHHHTTCCEEEECS---SHHHHHHH
T ss_pred HHHHHHHHhCCCCEEE--ecCCHH-HHHHHHHhhcCcCCeeEec-chhhHHHHHHHHHHcCCcEEEEec---cHHHHHHH
Confidence 4566666667788776 467876 5677778776521111111 134577889999999998888754 66666555
Q ss_pred hcc-----CCEEEEEeecCCCCCCccchhHHHHHHHHHHH---hhhcCCCCeEEEecCCChh-------cHHHHHHcCCc
Q 023494 185 LDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRM---CLEKGVNPWIEVDGGVGPK-------NAYKVIEAGAN 249 (281)
Q Consensus 185 l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l---~~~~~~~~~I~VDGGI~~e-------~i~~~~~aGAD 249 (281)
... ++-|. .+||..| | .++++...++|.. -..+.+++++-. |.+.+ .+..++..|+|
T Consensus 218 v~~a~~~GI~~Iv---LDPG~~g--~-~~t~~~~~~iRr~AL~~~d~~LgyPvi~--~~sr~d~~~E~t~A~~~i~kga~ 289 (446)
T 4djd_C 218 VDKIVALGHKQLV---LDPGARE--T-SRAIADFTQIRRLAIKKRFRSFGYPIIA--LTTAANPLDEVLQAVNYVTKYAS 289 (446)
T ss_dssp HHHHHHTTCCCEE---EECCCCS--H-HHHHHHHHHHHHHHHHSCCGGGCSCBEE--ECCCSSHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHCCCCcEE---ECCCchh--H-HHHHHHHHHHHHHhhhccCcccCCCEEe--ccCCccHHHHHHHHHHHHHcCCe
Confidence 432 44343 3899866 3 3455555555554 112234556432 22221 22456788999
Q ss_pred EEEEc
Q 023494 250 ALVAG 254 (281)
Q Consensus 250 ~~VvG 254 (281)
++++=
T Consensus 290 Iv~vh 294 (446)
T 4djd_C 290 LVVLR 294 (446)
T ss_dssp EEEES
T ss_pred EEEEc
Confidence 99874
|
| >3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503} | Back alignment and structure |
|---|
Probab=92.00 E-value=1.4 Score=38.34 Aligned_cols=215 Identities=10% Similarity=-0.065 Sum_probs=109.0
Q ss_pred hhhhhccccccCCC-CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCee-
Q 023494 42 TIVKASARVDKFSK-SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD- 119 (281)
Q Consensus 42 ~~~~~~~~~~~~~~-~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~id- 119 (281)
++-+|++..++=.+ ++++|+-+.++..-..+++.++.+.+.|.+.+++..- + .....+.++++-+..++.+.
T Consensus 9 ~~~~~~~~~~~~~~~m~mklg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~--~----~~~~~~~~~~~l~~~gl~v~~ 82 (287)
T 3kws_A 9 NTAKGEKGSDKTGKDLELKLSFQEGIAPGESLNEKLDFMEKLGVVGFEPGGG--G----LAGRVNEIKQALNGRNIKVSA 82 (287)
T ss_dssp --------------CCCCEEEEETTSSCCSSHHHHHHHHHHTTCCEEECBST--T----CGGGHHHHHHHHTTSSCEECE
T ss_pred ccccccccCcccCCcceeeEEEEecccCCCCHHHHHHHHHHcCCCEEEecCC--c----hHHHHHHHHHHHHHcCCeEEE
Confidence 33445555554333 2467888877776678999999999999999877422 1 22233444443333455543
Q ss_pred EEEE------ecChh----------hHHHHHHHcCCCEEEEccccc--------c-------cccHHHHHHHHHHcCCcE
Q 023494 120 VHLM------IVEPE----------QRVPDFIKAGADIVSVHCEQS--------S-------TIHLHRTLNQIKDLGAKA 168 (281)
Q Consensus 120 aHLm------v~dp~----------~~i~~~~~aGAd~Itvh~Ea~--------~-------~~~i~~~l~~ik~~G~k~ 168 (281)
+|.- ..||. +.++.+.+.|++.|.+|.-.. . .+.+.++.+.++++|+++
T Consensus 83 ~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l 162 (287)
T 3kws_A 83 ICAGFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNGQVPALPHTMETRDFLCEQFNEMGTFAAQHGTSV 162 (287)
T ss_dssp EECCCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTTCCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCE
T ss_pred EecCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEE
Confidence 2321 12442 245566788999999984310 0 123566777788899998
Q ss_pred EEEECC---C---CCHHHHHHhhccCC--EEEEEeecCCC---CCCccchhHHHHHHHHHHHhhh-----c-CCCCeEEE
Q 023494 169 GVVLNP---A---TSLSAIECVLDVVD--LVLIMSVNPGF---GGQSFIESQVKKISDLRRMCLE-----K-GVNPWIEV 231 (281)
Q Consensus 169 Glai~p---~---t~ie~~~~~l~~vD--~IlvmsV~pG~---~GQ~f~~~~l~kI~~lr~l~~~-----~-~~~~~I~V 231 (281)
++--.+ . ...+.+..+++.++ .+-+ +.++|- .|.. ..+-|+++...+.. . +...+ =
T Consensus 163 ~lE~~~~~~~~~~~~~~~~~~ll~~v~~~~vg~-~~D~~h~~~~g~d----~~~~l~~~~~~i~~vHlkD~~~r~~p--G 235 (287)
T 3kws_A 163 IFEPLNRKECFYLRQVADAASLCRDINNPGVRC-MGDFWHMTWEETS----DMGAFISGGEYLQHVHVASRKRRSMP--G 235 (287)
T ss_dssp EECCCCTTTCSSCCCHHHHHHHHHHHCCTTEEE-EEEHHHHHHHCSC----HHHHHHHHGGGEEEEEECCTTTSCST--T
T ss_pred EEEecCcccCcccCCHHHHHHHHHHcCCCCeeE-EeehHHHHhcCCC----HHHHHHHhhhhEEEEEeCCCCCCCCC--C
Confidence 886432 1 24556666666543 3332 233331 2221 12233333322210 0 11111 2
Q ss_pred ecC--CChh-cHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 232 DGG--VGPK-NAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 232 DGG--I~~e-~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
+|. |+.. -+..+.+.|.+..++=- .+...||.+.+++-
T Consensus 236 ~G~d~id~~~i~~~L~~~gy~g~i~lE-~~~~~~~~~~~~~s 276 (287)
T 3kws_A 236 EDGDADNYINGFKGLKMIGYNNYVSFE-CGCQGDRNVVVPAA 276 (287)
T ss_dssp TTGGGCCCHHHHHHHHHTTCCSEEEEC-CCCSSCHHHHHHHH
T ss_pred CCCCCcCHHHHHHHHHHcCCCccEEEE-ecCCCCHHHHHHHH
Confidence 455 7744 55677888988655422 23345776555443
|
| >3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.99 E-value=0.2 Score=46.80 Aligned_cols=106 Identities=17% Similarity=0.249 Sum_probs=73.0
Q ss_pred eEeEEEeccCccCHH---HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 59 IVSPSILSANFAKLG---EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 59 ~i~pSila~D~~~l~---~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+--.|+..-|..+.+ ++++.|.++|+|.+-+- +|.. .-.+.++.||+.++.|+.+|+- .|| +....++
T Consensus 32 i~VQSMtnt~T~D~~atv~Qi~~l~~aG~diVRva------vp~~-~~a~al~~I~~~~~vPlvaDiH-f~~-~lal~a~ 102 (366)
T 3noy_A 32 IVVQSMTSTKTHDVEATLNQIKRLYEAGCEIVRVA------VPHK-EDVEALEEIVKKSPMPVIADIH-FAP-SYAFLSM 102 (366)
T ss_dssp CEEEEECCSCTTCHHHHHHHHHHHHHTTCCEEEEE------CCSH-HHHHHHHHHHHHCSSCEEEECC-SCH-HHHHHHH
T ss_pred EEEEEecCCCCcCHHHHHHHHHHHHHcCCCEEEeC------CCCh-HHHHHHHHHHhcCCCCEEEeCC-CCH-HHHHHHH
Confidence 345666666665554 66778889999987662 4542 2257788888878899888753 243 2455688
Q ss_pred HcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEEC
Q 023494 136 KAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
++|+|.+-+-.-.. ..+.+.++++.++++|+-+=+-+|
T Consensus 103 e~G~dklRINPGNig~~~~~~~vv~~ak~~~~piRIGvN 141 (366)
T 3noy_A 103 EKGVHGIRINPGNIGKEEIVREIVEEAKRRGVAVRIGVN 141 (366)
T ss_dssp HTTCSEEEECHHHHSCHHHHHHHHHHHHHHTCEEEEEEE
T ss_pred HhCCCeEEECCcccCchhHHHHHHHHHHHcCCCEEEecC
Confidence 99999999885532 134567899999999986655433
|
| >1ofd_A Ferredoxin-dependent glutamate synthase 2; oxidoreductase, complex enzyme, substrate channeling, amidotransferase, flavoprotein, iron-sulphur; HET: FMN AKG; 2.00A {Synechocystis SP} SCOP: b.80.4.1 c.1.4.1 d.153.1.1 PDB: 1llz_A* 1lm1_A* 1llw_A* 1ofe_A* | Back alignment and structure |
|---|
Probab=91.96 E-value=0.57 Score=51.18 Aligned_cols=122 Identities=19% Similarity=0.262 Sum_probs=74.2
Q ss_pred HcCCCEEEEcccc--cccccHHHHHHHHHHc--CCcEEEEECCCCCH-HHHHHhhc-cCCEEEEEeecCCCCCCccch--
Q 023494 136 KAGADIVSVHCEQ--SSTIHLHRTLNQIKDL--GAKAGVVLNPATSL-SAIECVLD-VVDLVLIMSVNPGFGGQSFIE-- 207 (281)
Q Consensus 136 ~aGAd~Itvh~Ea--~~~~~i~~~l~~ik~~--G~k~Glai~p~t~i-e~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~-- 207 (281)
..|.+.++-.... .+.+++.+.++.+|+. ++.+++-+-+...+ +....+.+ .+|.|.+-....|.++ .+.+
T Consensus 995 ~~Gv~lisP~~~~d~~s~edl~~~I~~Lk~~~~~~PV~VKlv~~~gi~~~A~~a~kAGAD~IvVsG~eGGTga-sp~~~~ 1073 (1520)
T 1ofd_A 995 KPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTGA-SPLSSI 1073 (1520)
T ss_dssp CTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCSS-EEHHHH
T ss_pred CCCCCeeCCCCCcCcCCHHHHHHHHHHHHHhCCCCCEEEEecCCCChHHHHHHHHHcCCCEEEEeCCCCccCC-Ccchhh
Confidence 3466666543221 0123456788888887 67778766554443 33333333 4899987444433222 2111
Q ss_pred -----hHHHHHHHHHHHhhhcCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 208 -----SQVKKISDLRRMCLEKGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 208 -----~~l~kI~~lr~l~~~~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
-+..-|.++++.+...+. +++|.+||||. ...+.+++.+|||.+-+|++.+
T Consensus 1074 ~~~GlPt~~aL~ev~~al~~~glr~~IpVIAdGGIrtG~DVakALaLGAdaV~iGTafL 1132 (1520)
T 1ofd_A 1074 KHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSIAM 1132 (1520)
T ss_dssp HHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHHHH
T ss_pred cCCchhHHHHHHHHHHHHHhcCCCCCceEEEECCCCCHHHHHHHHHcCCCeeEEcHHHH
Confidence 123445666665543322 47899999999 6688899999999999998853
|
| >2og9_A Mandelate racemase/muconate lactonizing enzyme; NYSGXRC, protein structure initiative (PSI) II, PSI-2, 9382A mandelate racemase; 1.90A {Polaromonas SP} PDB: 3cb3_A* | Back alignment and structure |
|---|
Probab=91.95 E-value=0.96 Score=42.14 Aligned_cols=113 Identities=10% Similarity=0.018 Sum_probs=76.2
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
+|+.+.+ .+.++|.+.+=+|.-..+.....+.++++|+. ++.+.+..|.....+...++++. +++|
T Consensus 162 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~avg~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 238 (393)
T 2og9_A 162 PIDQLMVNASASIERGIGGIKLKVGQPDGALDIARVTAVRKHLGDAVPLMVDANQQWDRPTAQRMCRIFEPFNLVWI--- 238 (393)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEECCCSCHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHHhhCCCEE---
Confidence 6776654 35678999999986421123345677888875 46788888888777665555432 4444
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.|++.+..++-.+++++.. +++|..|+.+. ++.+..+++.| +|++.+
T Consensus 239 -------E~P~~~~~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 287 (393)
T 2og9_A 239 -------EEPLDAYDHEGHAALALQF-----DTPIATGEMLTSAAEHGDLIRHRAADYLMP 287 (393)
T ss_dssp -------ECCSCTTCHHHHHHHHHHC-----SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred -------ECCCCcccHHHHHHHHHhC-----CCCEEeCCCcCCHHHHHHHHHCCCCCEEee
Confidence 2455555566666666543 47999999996 78888888877 787755
|
| >2ovl_A Putative racemase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.13A {Streptomyces coelicolor A3} PDB: 3ck5_A | Back alignment and structure |
|---|
Probab=91.72 E-value=1 Score=41.51 Aligned_cols=118 Identities=8% Similarity=0.021 Sum_probs=78.6
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
+|+.+.+ .+.+.|.+.+=+|.-..+.+...+.++++|+. ++.+.+..|.....+...++++. +++|
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 222 (371)
T 2ovl_A 146 PVADLKTQADRFLAGGFRAIKMKVGRPDLKEDVDRVSALREHLGDSFPLMVDANMKWTVDGAIRAARALAPFDLHWI--- 222 (371)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSSHHHHHHHHHHHHHHHCTTSCEEEECTTCSCHHHHHHHHHHHGGGCCSEE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCEE---
Confidence 6766654 45678999999986431123344677777763 57788888888777665555432 4444
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEccccc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVF 258 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf 258 (281)
.|++.+..++-++++++.. +++|..|+.+. ++.+..+++.| +|++.+.-.-.
T Consensus 223 -------EqP~~~~d~~~~~~l~~~~-----~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~~ 276 (371)
T 2ovl_A 223 -------EEPTIPDDLVGNARIVRES-----GHTIAGGENLHTLYDFHNAVRAGSLTLPEPDVSNI 276 (371)
T ss_dssp -------ECCSCTTCHHHHHHHHHHH-----CSCEEECTTCCSHHHHHHHHHHTCCSEECCCTTTT
T ss_pred -------ECCCCcccHHHHHHHHhhC-----CCCEEeCCCCCCHHHHHHHHHcCCCCEEeeCcccc
Confidence 2555555566677776654 37999999996 78888887766 78887764433
|
| >1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=91.67 E-value=1 Score=39.44 Aligned_cols=118 Identities=19% Similarity=0.180 Sum_probs=69.4
Q ss_pred HHHHHHcCCCEEEEcccccc-----cccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhc-----cCCEEEEEeecCC
Q 023494 131 VPDFIKAGADIVSVHCEQSS-----TIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLD-----VVDLVLIMSVNPG 199 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~-----~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~-----~vD~IlvmsV~pG 199 (281)
++.+.+.|||-|-++..-.. .+++.++.+.++++|+.+-+.+.... ..+.+..... .+|+|=. .-|
T Consensus 94 ~~~Av~~GAdEID~vinig~~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~~e~i~~a~ria~eaGADfVKT---sTG 170 (234)
T 1n7k_A 94 AQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVKT---STG 170 (234)
T ss_dssp HHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEES---CCS
T ss_pred HHHHHHcCCCEEEEeccchHHHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCCHHHHHHHHHHHHHhCCCEEEe---CCC
Confidence 56788999999999975321 12455566666666765544443211 1233333222 3798842 335
Q ss_pred CCCCccchhHHHHHHH--HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCc--EEEEccccc
Q 023494 200 FGGQSFIESQVKKISD--LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGAN--ALVAGSAVF 258 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~--lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD--~~VvGSaIf 258 (281)
|.+ +...+++.++. +++... ++|-+.|||+ .+++..++++||+ ..-.|..||
T Consensus 171 ~~~--~~gAt~~dv~l~~m~~~v~-----v~VKaaGGirt~~~al~~i~aGa~RiG~S~g~~I~ 227 (234)
T 1n7k_A 171 VYT--KGGDPVTVFRLASLAKPLG-----MGVKASGGIRSGIDAVLAVGAGADIIGTSSAVKVL 227 (234)
T ss_dssp SSC--CCCSHHHHHHHHHHHGGGT-----CEEEEESSCCSHHHHHHHHHTTCSEEEETTHHHHH
T ss_pred CCC--CCCCCHHHHHHHHHHHHHC-----CCEEEecCCCCHHHHHHHHHcCccccchHHHHHHH
Confidence 532 01234444444 554432 6888999999 7788889999999 444444444
|
| >1mdl_A Mandelate racemase; isomerase, mandelate pathway, magnesium; HET: RMN SMN; 1.85A {Pseudomonas aeruginosa} SCOP: c.1.11.2 d.54.1.1 PDB: 1mdr_A* 3uxk_A* 3uxl_A* 1dtn_A* 1mra_A* 2mnr_A 1mns_A | Back alignment and structure |
|---|
Probab=91.62 E-value=0.92 Score=41.58 Aligned_cols=117 Identities=9% Similarity=0.059 Sum_probs=77.2
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEEE
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVLI 193 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilv 193 (281)
.+|+.+.+ .+.+.|.+.+=+|.-..+.....+.++++|+. ++.+.+..|.....+...++++. +++|
T Consensus 143 ~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 220 (359)
T 1mdl_A 143 DGVKLATERAVTAAELGFRAVKTRIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTWI-- 220 (359)
T ss_dssp CHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHHHTCSCE--
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCCCCHHHHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHHHhCCCeE--
Confidence 46766654 45678999999996421123345677777773 46777888877777665555432 4544
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEccc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSA 256 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSa 256 (281)
.|++.+..++-++++++. .+++|..|+.+. ++.+.++++.| +|++.+.-.
T Consensus 221 --------E~P~~~~~~~~~~~l~~~-----~~iPI~~de~~~~~~~~~~~i~~~~~d~v~ik~~ 272 (359)
T 1mdl_A 221 --------EEPTLQHDYEGHQRIQSK-----LNVPVQMGENWLGPEEMFKALSIGACRLAMPDAM 272 (359)
T ss_dssp --------ECCSCTTCHHHHHHHHHT-----CSSCEEECTTCCSHHHHHHHHHTTCCSEECCBTT
T ss_pred --------ECCCChhhHHHHHHHHHh-----CCCCEEeCCCCCCHHHHHHHHHcCCCCEEeecch
Confidence 255555556666666553 258999999996 78888887776 788877643
|
| >2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A* | Back alignment and structure |
|---|
Probab=91.53 E-value=1.9 Score=39.12 Aligned_cols=95 Identities=19% Similarity=0.262 Sum_probs=51.2
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc---ccCC------HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---ITIG------PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---~~~G------~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|.....+..+.+.+.|+|+|-|...- .-|. ++.. ..+|+.+++. +.|+-+ =+.+|. .++.+.++|
T Consensus 50 ~~~~a~~~a~~~v~~GAdIIDIGgeS--TrPga~~v~~~eE~~Rv~pvI~~l~~~-~vpiSI--DT~~~~-Va~aAl~aG 123 (294)
T 2dqw_A 50 DPERALERAREMVAEGADILDLGAES--TRPGAAPVPVEEEKRRLLPVLEAVLSL-GVPVSV--DTRKPE-VAEEALKLG 123 (294)
T ss_dssp ---CCHHHHHHHHHHTCSEEEEECC-------------CCHHHHHHHHHHHHHTT-CSCEEE--ECSCHH-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCCc--CCCCCCCCCHHHHHHHHHHHHHHHHhC-CCeEEE--ECCCHH-HHHHHHHhC
Confidence 34444445566677899987443211 1121 1111 1234455443 555544 455655 677788899
Q ss_pred CCEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 139 Ad~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+++|- +..+ ...+.+..++++|..+.+.-+
T Consensus 124 a~iINdVsg~-----~d~~m~~v~a~~~~~vVlmh~ 154 (294)
T 2dqw_A 124 AHLLNDVTGL-----RDERMVALAARHGVAAVVMHM 154 (294)
T ss_dssp CSEEECSSCS-----CCHHHHHHHHHHTCEEEEECC
T ss_pred CCEEEECCCC-----CChHHHHHHHHhCCCEEEEcC
Confidence 99773 2222 234678888999987777654
|
| >1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A* | Back alignment and structure |
|---|
Probab=91.44 E-value=0.99 Score=41.29 Aligned_cols=120 Identities=19% Similarity=0.203 Sum_probs=73.6
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCccc-----ccc-----cCC----------HHHHHHcCcCCCCCeeEEEEecC-----
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFV-----PNI-----TIG----------PLVVDALRPVTDLPLDVHLMIVE----- 126 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fv-----pn~-----~~G----------~~~I~~ir~~t~~~idaHLmv~d----- 126 (281)
+.++.+.+.++|.|.|++..--|-.+ |+. .+| .++++++|+..+.++-+.|-..+
T Consensus 146 ~~~aA~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~~~~~g 225 (338)
T 1z41_A 146 FKQAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKG 225 (338)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTS
T ss_pred HHHHHHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcccCCCC
Confidence 44556677889999988765433111 321 233 67888888866788888765532
Q ss_pred -----hhhHHHHHHHcCCCEEEEccccc-----c-cc-cHHHHHHHHHHc-CCcEEEEECCC-CCHHHHHHhhcc--CCE
Q 023494 127 -----PEQRVPDFIKAGADIVSVHCEQS-----S-TI-HLHRTLNQIKDL-GAKAGVVLNPA-TSLSAIECVLDV--VDL 190 (281)
Q Consensus 127 -----p~~~i~~~~~aGAd~Itvh~Ea~-----~-~~-~i~~~l~~ik~~-G~k~Glai~p~-t~ie~~~~~l~~--vD~ 190 (281)
..++++.+.++|+|++++|.-.. + .. .-.+.++.+|+. ++. +..+-. +..+..++++.. +|.
T Consensus 226 ~~~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~iP--Vi~~Ggi~s~~~a~~~l~~G~aD~ 303 (338)
T 1z41_A 226 LDIADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMA--TGAVGMITDGSMAEEILQNGRADL 303 (338)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCE--EEECSSCCSHHHHHHHHHTTSCSE
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCCCC--EEEECCCCCHHHHHHHHHcCCceE
Confidence 23456677899999999985310 0 11 123556667664 332 333333 466777787763 999
Q ss_pred EEE
Q 023494 191 VLI 193 (281)
Q Consensus 191 Ilv 193 (281)
|.+
T Consensus 304 V~i 306 (338)
T 1z41_A 304 IFI 306 (338)
T ss_dssp EEE
T ss_pred Eee
Confidence 976
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=91.35 E-value=1.4 Score=37.58 Aligned_cols=129 Identities=9% Similarity=0.046 Sum_probs=76.0
Q ss_pred eEeEEEec-cCccCHHHHHHHHHHcCCCeEEEE-eeeCc-ccccccCCHHHHHHcCcCCCCCee-EEEEe----cChh--
Q 023494 59 IVSPSILS-ANFAKLGEQVKAVELAGCDWIHVD-VMDGR-FVPNITIGPLVVDALRPVTDLPLD-VHLMI----VEPE-- 128 (281)
Q Consensus 59 ~i~pSila-~D~~~l~~~l~~l~~~G~d~iHiD-ImDG~-fvpn~~~G~~~I~~ir~~t~~~id-aHLmv----~dp~-- 128 (281)
+|+-+.++ ..-..+++.++.+.+.|.+.+++. .-+.. |. -....+.++++-+..++.+. +|.-. .||.
T Consensus 2 klg~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~ 79 (278)
T 1i60_A 2 KLCFNEATTLENSNLKLDLELCEKHGYDYIEIRTMDKLPEYL--KDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGH 79 (278)
T ss_dssp EEEEEGGGGTTTCCHHHHHHHHHHTTCSEEEEETTTHHHHHT--TSSCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHH
T ss_pred eeEechhhcccCCCHHHHHHHHHHhCCCEEEEccHHHHHHHh--ccCCHHHHHHHHHHcCCCeeeeccccccccCCHHHH
Confidence 45555555 344689999999999999998885 32211 10 11334444444333455544 55432 2442
Q ss_pred --------hHHHHHHHcCCCEEEEcccccc------------cccHHHHHHHHHHcCCcEEEEECCCC-----CHHHHHH
Q 023494 129 --------QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVLNPAT-----SLSAIEC 183 (281)
Q Consensus 129 --------~~i~~~~~aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k~Glai~p~t-----~ie~~~~ 183 (281)
+.++.+.+.|++.|.+|.-... .+.+.++.+.++++|+++++--.+.+ ..+.+..
T Consensus 80 ~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~ 159 (278)
T 1i60_A 80 NEIITEFKGMMETCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYE 159 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccchhcCHHHHHH
Confidence 2355567889999999843211 01244556666778999888755443 4566667
Q ss_pred hhccCC
Q 023494 184 VLDVVD 189 (281)
Q Consensus 184 ~l~~vD 189 (281)
+++.++
T Consensus 160 l~~~~~ 165 (278)
T 1i60_A 160 IVNTVN 165 (278)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 766543
|
| >1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A | Back alignment and structure |
|---|
Probab=91.33 E-value=0.2 Score=45.54 Aligned_cols=192 Identities=15% Similarity=0.143 Sum_probs=104.8
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE---e-e--eCcccccc-----cCCHHHHHHcCcCCCCCeeEEE---
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD---V-M--DGRFVPNI-----TIGPLVVDALRPVTDLPLDVHL--- 122 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD---I-m--DG~fvpn~-----~~G~~~I~~ir~~t~~~idaHL--- 122 (281)
+.+..|..+..- . -+.++++|.|.+-+- + | =| .|.. ..=...++.|...++.|+.+|+
T Consensus 17 ~~i~~~~a~D~~-----s-A~~~~~aG~~ai~vs~~~~a~~~~G--~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~G 88 (295)
T 1xg4_A 17 NPLQIVGTINAN-----H-ALLAQRAGYQAIYLSGGGVAAGSLG--LPDLGISTLDDVLTDIRRITDVCSLPLLVDADIG 88 (295)
T ss_dssp SSEEEEECSSHH-----H-HHHHHHTTCSCEEECHHHHHHTTTC--CCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTC
T ss_pred CcEEEecCcCHH-----H-HHHHHHcCCCEEEECchHhhhhhcC--CCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcc
Confidence 445555554222 1 335566788887662 0 0 01 1221 1122345555555778999988
Q ss_pred EecChh---hHHHHHHHcCCCEEEEccccc-------------ccccHHHHHHHHHHcCCcEEEEECCCCC---------
Q 023494 123 MIVEPE---QRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLGAKAGVVLNPATS--------- 177 (281)
Q Consensus 123 mv~dp~---~~i~~~~~aGAd~Itvh~Ea~-------------~~~~i~~~l~~ik~~G~k~Glai~p~t~--------- 177 (281)
.=.+|. +.+..+.++||..|.+-.-.. +.++..+-|+++++.+...++.++-.|+
T Consensus 89 yg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~~ 168 (295)
T 1xg4_A 89 FGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLDA 168 (295)
T ss_dssp SSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHHH
Confidence 323665 346678899999998753210 1113334566666665444444443333
Q ss_pred -HHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE--EEe-cCCC-hhcHHHHHHcCCcEE
Q 023494 178 -LSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI--EVD-GGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 178 -ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I--~VD-GGI~-~e~i~~~~~aGAD~~ 251 (281)
+++.+.|.+. +|.|.+ +|.. ..+.++++.+.++ .|+ .+. ||-+ .-+..++.+.|++.+
T Consensus 169 ai~ra~ay~eAGAd~i~~----e~~~-------~~~~~~~i~~~~~-----iP~~~N~~~~g~~p~~~~~eL~~~G~~~v 232 (295)
T 1xg4_A 169 AIERAQAYVEAGAEMLFP----EAIT-------ELAMYRQFADAVQ-----VPILANITEFGATPLFTTDELRSAHVAMA 232 (295)
T ss_dssp HHHHHHHHHHTTCSEEEE----TTCC-------SHHHHHHHHHHHC-----SCBEEECCSSSSSCCCCHHHHHHTTCSEE
T ss_pred HHHHHHHHHHcCCCEEEE----eCCC-------CHHHHHHHHHHcC-----CCEEEEecccCCCCCCCHHHHHHcCCCEE
Confidence 2334444443 898876 2321 2334455554442 343 233 5555 348899999999999
Q ss_pred EEcccccCCC--CHHHHHHHHHH
Q 023494 252 VAGSAVFGAK--DYAEAIKGIKT 272 (281)
Q Consensus 252 VvGSaIf~a~--dp~~~~~~l~~ 272 (281)
+.|.+.+.+. ...+.++.|++
T Consensus 233 ~~~~~~~~aa~~a~~~~~~~i~~ 255 (295)
T 1xg4_A 233 LYPLSAFRAMNRAAEHVYNVLRQ 255 (295)
T ss_dssp EESSHHHHHHHHHHHHHHHHHHH
T ss_pred EEChHHHHHHHHHHHHHHHHHHH
Confidence 9999888542 22344444444
|
| >3p3b_A Mandelate racemase/muconate lactonizing protein; enolase superfamily fold, galacturonate dehydratase, D-tartr galacturonate, lyase; HET: TAR; 1.65A {Geobacillus SP} PDB: 3ops_A* 3n4f_A* 3qpe_A* | Back alignment and structure |
|---|
Probab=91.30 E-value=0.99 Score=42.10 Aligned_cols=117 Identities=15% Similarity=0.107 Sum_probs=73.8
Q ss_pred hhHHH---HHHHcCCCEEEEccccc--------ccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHHhhccC---CE
Q 023494 128 EQRVP---DFIKAGADIVSVHCEQS--------STIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAIECVLDVV---DL 190 (281)
Q Consensus 128 ~~~i~---~~~~aGAd~Itvh~Ea~--------~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~~~~l~~v---D~ 190 (281)
+.+.+ .+.+.|.+.+=+|.-.. ..+...+.++++|+ . ++.+.+..|.....+...++++.+ +.
T Consensus 150 e~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~~~~~~~~~e~v~avR~~~g~d~~l~vDan~~~~~~~ai~~~~~l~~~~i 229 (392)
T 3p3b_A 150 ALMQEEAMQGYAKGQRHFKIKVGRGGRHMPLWEGTKRDIAIVRGISEVAGPAGKIMIDANNAYNLNLTKEVLAALSDVNL 229 (392)
T ss_dssp HHHHHHHHHHHHTTCCCEEEECCHHHHTSCHHHHHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHHHHHHHHHHTTTSCE
T ss_pred HHHHHHHHHHHHhCCCEEEECcCcCcccCCccccHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcCC
Confidence 65544 35678999999885420 01223466777776 3 467788888887877666665542 22
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.. ++ |++. ..++-.+++++.+.+++.+++|+.|+ ++ ++.+.++++.| +|++.+=
T Consensus 230 ~~---iE-----~P~~-~d~~~~~~l~~~l~~~g~~iPIa~dE-~~~~~~~~~~i~~~~~d~v~ik 285 (392)
T 3p3b_A 230 YW---LE-----EAFH-EDEALYEDLKEWLGQRGQNVLIADGE-GLASPHLIEWATRGRVDVLQYD 285 (392)
T ss_dssp EE---EE-----CSSS-CCHHHHHHHHHHHHHHTCCCEEEECC-SSCCTTHHHHHHTTSCCEECCB
T ss_pred CE---Ee-----cCCc-ccHHHHHHHHHhhccCCCCccEEecC-CCCHHHHHHHHHcCCCCEEEeC
Confidence 22 22 4443 34555566665533334468999999 86 78999999888 7877653
|
| >1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1 | Back alignment and structure |
|---|
Probab=91.26 E-value=3.1 Score=36.21 Aligned_cols=113 Identities=19% Similarity=0.221 Sum_probs=66.0
Q ss_pred HHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHc----CCcEEEEECCCCCHHHHHHhhc-----cCCEEEEEee
Q 023494 131 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL----GAKAGVVLNPATSLSAIECVLD-----VVDLVLIMSV 196 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~----G~k~Glai~p~t~ie~~~~~l~-----~vD~IlvmsV 196 (281)
++. .+.|||-|-++..-. ..+...+.++.+++. ++|+-+...--| .+.+..... .+|+|=-
T Consensus 73 ~~~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt-~eei~~a~~ia~eaGADfVKT--- 147 (226)
T 1vcv_A 73 VSR-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLR-DEERYTLYDIIAEAGAHFIKS--- 147 (226)
T ss_dssp HHH-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCC-HHHHHHHHHHHHHHTCSEEEC---
T ss_pred HHH-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCC-HHHHHHHHHHHHHcCCCEEEe---
Confidence 556 889999998886421 112234444444443 334444332223 233333322 3798842
Q ss_pred cCCCC--------CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc---CCc
Q 023494 197 NPGFG--------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA---GAN 249 (281)
Q Consensus 197 ~pG~~--------GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a---GAD 249 (281)
..||. |+ -...+++.++-+++.+...+.++.|-+.|||+ .+++..++++ ||+
T Consensus 148 STGf~~~~~~~~~~~-~~gAt~~dv~lm~~~i~~~g~~v~vKaaGGirt~~~al~~i~a~~~Ga~ 211 (226)
T 1vcv_A 148 STGFAEEAYAARQGN-PVHSTPERAAAIARYIKEKGYRLGVKMAGGIRTREQAKAIVDAIGWGED 211 (226)
T ss_dssp CCSCCCHHHHHHTTC-CSSCCHHHHHHHHHHHHHHTCCCEEEEESSCCSHHHHHHHHHHHCSCSC
T ss_pred CCCCCccccccccCC-CCCCCHHHHHHHHHHHHHhCCCceEEEeCCCCCHHHHHHHHHHHHCCCC
Confidence 34554 00 01245666666666654445568899999999 8899999999 998
|
| >2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* | Back alignment and structure |
|---|
Probab=91.24 E-value=0.15 Score=45.99 Aligned_cols=134 Identities=10% Similarity=0.006 Sum_probs=82.8
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCC---eEEEEeeeCcccccc----cCC------HHHHHHcCcCCCCCeeEEEE
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCD---WIHVDVMDGRFVPNI----TIG------PLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d---~iHiDImDG~fvpn~----~~G------~~~I~~ir~~t~~~idaHLm 123 (281)
...+..+|...+..++.+.++.+.++|+| .+++.+- .|+. .+| .++++++|+.++.|+.+-+-
T Consensus 93 ~~p~~~~i~g~~~~~~~~~a~~~~~~g~d~~~~iein~~----~P~~~g~~~~g~~~~~~~~ii~~vr~~~~~Pv~vK~~ 168 (314)
T 2e6f_A 93 KKPLFLSISGLSVEENVAMVRRLAPVAQEKGVLLELNLS----CPNVPGKPQVAYDFEAMRTYLQQVSLAYGLPFGVKMP 168 (314)
T ss_dssp TCCEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECC----CCCSTTCCCGGGSHHHHHHHHHHHHHHHCSCEEEEEC
T ss_pred CCcEEEEeCCCCHHHHHHHHHHHHHhCCCcCceEEEEcC----CCCCCCchhhcCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 34577888887888888999999999999 8988653 2332 222 45788888766788877443
Q ss_pred ec-Chh---hHHHHHHHcC-CCEEEEcccc----------c-------------cc----ccHHHHHHHHHHcC-CcEEE
Q 023494 124 IV-EPE---QRVPDFIKAG-ADIVSVHCEQ----------S-------------ST----IHLHRTLNQIKDLG-AKAGV 170 (281)
Q Consensus 124 v~-dp~---~~i~~~~~aG-Ad~Itvh~Ea----------~-------------~~----~~i~~~l~~ik~~G-~k~Gl 170 (281)
.. ++. ++.+.+.++| +|+|++|.-. . +. ....+.++.+++.- -..-+
T Consensus 169 ~~~~~~~~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi 248 (314)
T 2e6f_A 169 PYFDIAHFDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVF 248 (314)
T ss_dssp CCCCHHHHHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCHHHHHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEE
Confidence 32 222 2356678999 9999988521 0 00 01136677777652 22223
Q ss_pred EECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 171 VLNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 171 ai~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
+..-=...+.+.+++. .+|.|.+.
T Consensus 249 ~~GGI~~~~da~~~l~~GAd~V~ig 273 (314)
T 2e6f_A 249 GCGGVYSGEDAFLHILAGASMVQVG 273 (314)
T ss_dssp EESSCCSHHHHHHHHHHTCSSEEEC
T ss_pred EECCCCCHHHHHHHHHcCCCEEEEc
Confidence 3322234555555543 58998764
|
| >3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis} | Back alignment and structure |
|---|
Probab=91.17 E-value=0.74 Score=39.95 Aligned_cols=127 Identities=11% Similarity=-0.051 Sum_probs=77.4
Q ss_pred eEeEEEeccCc--cCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCc---CCCCCeeEEEEe-c--Chh-
Q 023494 59 IVSPSILSANF--AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRP---VTDLPLDVHLMI-V--EPE- 128 (281)
Q Consensus 59 ~i~pSila~D~--~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~---~t~~~idaHLmv-~--dp~- 128 (281)
+|+-|.++..- ..+++.++.+.+.|.+.+++..- +.+.+ ......++++|+ ..++.+.++--. . +|.
T Consensus 2 klg~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~---~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~ 78 (286)
T 3dx5_A 2 KYSLCTISFRHQLISFTDIVQFAYENGFEGIELWGT---HAQNLYMQEYETTERELNCLKDKTLEITMISDYLDISLSAD 78 (286)
T ss_dssp EEEEEGGGGTTSCCCHHHHHHHHHHTTCCEEEEEHH---HHHHHHHHCHHHHHHHHHHTGGGTCCEEEEECCCCCSTTSC
T ss_pred eEEEEeeeccCCCCCHHHHHHHHHHhCCCEEEEccc---ccccccccCHHHHHHHHHHHHHcCCeEEEEecCCCCCCchh
Confidence 56667777654 68999999999999999887421 11111 122334444433 246666654211 1 221
Q ss_pred ---------hHHHHHHHcCCCEEEEcccccc------------cccHHHHHHHHHHcCCcEEEEECCCC---CHHHHHHh
Q 023494 129 ---------QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVLNPAT---SLSAIECV 184 (281)
Q Consensus 129 ---------~~i~~~~~aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k~Glai~p~t---~ie~~~~~ 184 (281)
+.++.+.+.|+..|.+|.-... .+.+.++.+.++++|+++++--.+.+ ..+.+..+
T Consensus 79 ~~~~~~~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~l 158 (286)
T 3dx5_A 79 FEKTIEKCEQLAILANWFKTNKIRTFAGQKGSADFSQQERQEYVNRIRMICELFAQHNMYVLLETHPNTLTDTLPSTLEL 158 (286)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCEEEECSCSSCGGGSCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCTTSTTSSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCEEEEcCCCCCcccCcHHHHHHHHHHHHHHHHHHHHhCCEEEEecCCCcCcCCHHHHHHH
Confidence 2455667889999999853211 12355667778889999998866553 34556666
Q ss_pred hccC
Q 023494 185 LDVV 188 (281)
Q Consensus 185 l~~v 188 (281)
++.+
T Consensus 159 ~~~~ 162 (286)
T 3dx5_A 159 LGEV 162 (286)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6654
|
| >1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A* | Back alignment and structure |
|---|
Probab=91.12 E-value=2.3 Score=38.80 Aligned_cols=119 Identities=15% Similarity=0.074 Sum_probs=69.8
Q ss_pred HHHHHHHHcC--CCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE--ccccc
Q 023494 74 EQVKAVELAG--CDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV--HCEQS 149 (281)
Q Consensus 74 ~~l~~l~~~G--~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv--h~Ea~ 149 (281)
+.++.+.+.| ++++++|...|. ...-.+.++++|+.++.++.+.=-+.++ +..+.+.++|||.|.+ |.-..
T Consensus 109 ~~a~~~~~~g~~~~~i~i~~~~G~----~~~~~~~i~~lr~~~~~~~vi~G~v~s~-e~A~~a~~aGad~Ivvs~hgG~~ 183 (336)
T 1ypf_A 109 EFVQQLAAEHLTPEYITIDIAHGH----SNAVINMIQHIKKHLPESFVIAGNVGTP-EAVRELENAGADATKVGIGPGKV 183 (336)
T ss_dssp HHHHHHHHTTCCCSEEEEECSSCC----SHHHHHHHHHHHHHCTTSEEEEEEECSH-HHHHHHHHHTCSEEEECSSCSTT
T ss_pred HHHHHHHhcCCCCCEEEEECCCCC----cHHHHHHHHHHHHhCCCCEEEECCcCCH-HHHHHHHHcCCCEEEEecCCCce
Confidence 4467778888 999998864431 1233567888888765444443334554 3677889999999999 54210
Q ss_pred ---------cccc-HHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhccCCEEEEEeec
Q 023494 150 ---------STIH-LHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN 197 (281)
Q Consensus 150 ---------~~~~-i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~ 197 (281)
.... ....+.++++. ++.+..+=.-.++.+..+.+.-.+|.|.+-+..
T Consensus 184 ~~~~~~~~~g~~g~~~~~l~~v~~~~~ipVIa~GGI~~g~Dv~kalalGAdaV~iGr~~ 242 (336)
T 1ypf_A 184 CITKIKTGFGTGGWQLAALRWCAKAASKPIIADGGIRTNGDVAKSIRFGATMVMIGSLF 242 (336)
T ss_dssp CHHHHHHSCSSTTCHHHHHHHHHHTCSSCEEEESCCCSTHHHHHHHHTTCSEEEESGGG
T ss_pred eecccccCcCCchhHHHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHcCCCEEEeChhh
Confidence 0000 23445555544 444443212234555555555569999875443
|
| >1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ... | Back alignment and structure |
|---|
Probab=91.04 E-value=1.6 Score=38.54 Aligned_cols=147 Identities=20% Similarity=0.217 Sum_probs=76.6
Q ss_pred CCeeEEEEecCh--hh---HHHHHHHcCCCEEEEccccc-c---cccH-----------------HHHHHHHHHc--CCc
Q 023494 116 LPLDVHLMIVEP--EQ---RVPDFIKAGADIVSVHCEQS-S---TIHL-----------------HRTLNQIKDL--GAK 167 (281)
Q Consensus 116 ~~idaHLmv~dp--~~---~i~~~~~aGAd~Itvh~Ea~-~---~~~i-----------------~~~l~~ik~~--G~k 167 (281)
..+..+++.-|| .. +++.+.++|+|++.+..-.. + ...+ .+.++.+|+. .+.
T Consensus 17 ~~~i~~i~~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~P 96 (268)
T 1qop_A 17 GAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIP 96 (268)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSC
T ss_pred ceEEEEeeCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCC
Confidence 457778888888 33 45567789999999986221 0 0112 2668888877 456
Q ss_pred EEEEE--CC--CCCHHH-HHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHH
Q 023494 168 AGVVL--NP--ATSLSA-IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAY 241 (281)
Q Consensus 168 ~Glai--~p--~t~ie~-~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~ 241 (281)
+++.. || .++.+. ++.+.+ .+|.|++... .. +.+.++.+.+.+++...-..+.-.-+.+.+.
T Consensus 97 v~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~----~~--------e~~~~~~~~~~~~g~~~i~l~~p~t~~~~i~ 164 (268)
T 1qop_A 97 IGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADV----PV--------EESAPFRQAALRHNIAPIFICPPNADDDLLR 164 (268)
T ss_dssp EEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTC----CG--------GGCHHHHHHHHHTTCEEECEECTTCCHHHHH
T ss_pred EEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCC----CH--------HHHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Confidence 66543 32 123333 333332 4787776311 11 2233344444444432222234444556777
Q ss_pred HHHHcCCcEEEEcc--cccCC-----CCHHHHHHHHHHhc
Q 023494 242 KVIEAGANALVAGS--AVFGA-----KDYAEAIKGIKTSK 274 (281)
Q Consensus 242 ~~~~aGAD~~VvGS--aIf~a-----~dp~~~~~~l~~~~ 274 (281)
.+.+.+.+.+.+.| ..++. ++..+.++++++..
T Consensus 165 ~i~~~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~ 204 (268)
T 1qop_A 165 QVASYGRGYTYLLSRSGVTGAENRGALPLHHLIEKLKEYH 204 (268)
T ss_dssp HHHHHCCSCEEEESSSSCCCSSSCC--CCHHHHHHHHHTT
T ss_pred HHHhhCCCcEEEEecCCcCCCccCCCchHHHHHHHHHhcc
Confidence 77777664443322 23332 22346667777654
|
| >2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A | Back alignment and structure |
|---|
Probab=91.01 E-value=2.7 Score=38.21 Aligned_cols=123 Identities=12% Similarity=0.086 Sum_probs=78.3
Q ss_pred CeeEEEEecChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhcc----
Q 023494 117 PLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDV---- 187 (281)
Q Consensus 117 ~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~---- 187 (281)
+....+-..+|+.+.+ .+.+.|.+.+=+|.-. +.++-.+.++++|+.| +.+.+..|.....+....+++.
T Consensus 130 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~d~~~v~avr~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~ 208 (345)
T 2zad_A 130 ETDKTVGIDTVENRVKEAKKIFEEGFRVIKIKVGE-NLKEDIEAVEEIAKVTRGAKYIVDANMGYTQKEAVEFARAVYQK 208 (345)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHSTTCEEEEECTTCSCHHHHHHHHHHHHHT
T ss_pred eeeEEecCCCHHHHHHHHHHHHHcCcCEEEEeecC-CHHHHHHHHHHHHhhCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 3333333357776654 3467899999998643 1233345677788765 5566677777777665555432
Q ss_pred -CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 188 -VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 188 -vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
++ .|+-.|++.+..++-.+++++.. +++|..|+.+. ++.+..+++.| +|++.+
T Consensus 209 ~i~--------~~~iE~P~~~~~~~~~~~l~~~~-----~ipia~dE~~~~~~~~~~~i~~~~~d~v~i 264 (345)
T 2zad_A 209 GID--------IAVYEQPVRREDIEGLKFVRFHS-----PFPVAADESARTKFDVMRLVKEEAVDYVNI 264 (345)
T ss_dssp TCC--------CSEEECCSCTTCHHHHHHHHHHS-----SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred CCC--------eeeeeCCCCcccHHHHHHHHHhC-----CCCEEEeCCcCCHHHHHHHHHhCCCCEEEE
Confidence 33 11223666665566666666543 47899999986 77888887776 788876
|
| >3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=91.01 E-value=1.6 Score=40.66 Aligned_cols=110 Identities=16% Similarity=0.143 Sum_probs=67.0
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCC-CHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT-SLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t-~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+...+.++|. .-.+|.. .++++..+.+++....++..+.... ..+.++.+.+ .+|+|.+-+ ..|. .+
T Consensus 58 lA~A~a~~Gg-~gvi~~~----~s~ee~~~~i~~~~~~~~~~~g~~~~~~e~~~~a~~aGvdvI~id~-a~G~-----~~ 126 (361)
T 3r2g_A 58 MANFMHSKGA-MGALHRF----MTIEENIQEFKKCKGPVFVSVGCTENELQRAEALRDAGADFFCVDV-AHAH-----AK 126 (361)
T ss_dssp HHHHHHHTTC-EEBCCSC----SCHHHHHHHHHTCCSCCBEEECSSHHHHHHHHHHHHTTCCEEEEEC-SCCS-----SH
T ss_pred HHHHHHHcCC-CEEEeCC----CCHHHHHHHHhhcceEEEEEcCCCHHHHHHHHHHHHcCCCEEEEeC-CCCC-----cH
Confidence 4445567774 3334432 3477778888876656666664322 2344554444 488665422 2232 23
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
..++.|+++|+..+ +.+|.+-+-.+++.+..+.++|||.+++|
T Consensus 127 ~~~e~I~~ir~~~~----~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg 169 (361)
T 3r2g_A 127 YVGKTLKSLRQLLG----SRCIMAGNVATYAGADYLASCGADIIKAG 169 (361)
T ss_dssp HHHHHHHHHHHHHT----TCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHhcC----CCeEEEcCcCCHHHHHHHHHcCCCEEEEc
Confidence 45667777777653 25664423456999999999999999995
|
| >1a3w_A Pyruvate kinase; allosteric regulation, tranferase, transfer; HET: FBP; 3.00A {Saccharomyces cerevisiae} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1a3x_A | Back alignment and structure |
|---|
Probab=90.95 E-value=0.3 Score=47.63 Aligned_cols=139 Identities=12% Similarity=0.112 Sum_probs=84.6
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhccCCEEEEEeecCCCC-CCccc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLDVVDLVLIMSVNPGFG-GQSFI 206 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~ 206 (281)
.++...+.|+|+|.+..-. +.+++.++.+.+.+.|..+.+ -|....-++.+.+++..+|.|++-..+-|.. |-
T Consensus 198 DI~~~l~~g~d~I~lpfV~-saeDv~~~~~~l~~~~~~i~IiakIEt~eav~nldeI~~~~DgImvgrgDLgvelg~--- 273 (500)
T 1a3w_A 198 DLRFGVKNGVHMVFASFIR-TANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPA--- 273 (500)
T ss_dssp HHHHHHHHTCSEEEECSCC-SHHHHHHHHHHHHHHHTTSEEEEEECSSHHHHSHHHHHHHSSEEEECHHHHHHHTTG---
T ss_pred HHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHhcCCCcEEEEEECChHHHHhHHHHHHhCCEEEECchHhhhhcCc---
Confidence 4667789999999999654 356677777777666544444 4543344567888887789887742221110 11
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEE--------ecCCChh-----cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEV--------DGGVGPK-----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~V--------DGGI~~e-----~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
++...-.+++....+..| .++.+ --.-++. .+...+..|+|.+.+++.--.-.-|.++++.|.+.
T Consensus 274 ~~v~~aqk~ii~aaraaG--kpvi~ATQMLeSMi~~~~ptraEvsdva~av~~G~d~vmLs~eta~G~yPveaV~~m~~I 351 (500)
T 1a3w_A 274 PEVLAVQKKLIAKSNLAG--KPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAET 351 (500)
T ss_dssp GGHHHHHHHHHHHHHHHT--CCEEECSSTTGGGGSCSSCCHHHHHHHHHHHHHTCSEECBSTTTTTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC--CCEEEEeehhhhhccCCCchHHHHHHHHHHHHhCCCEEEecchhhcchhHHHHHHHHHHH
Confidence 223223333333333333 34433 1223344 55677888999999997765557788888887764
Q ss_pred c
Q 023494 274 K 274 (281)
Q Consensus 274 ~ 274 (281)
+
T Consensus 352 ~ 352 (500)
T 1a3w_A 352 A 352 (500)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1nu5_A Chloromuconate cycloisomerase; enzyme, dehalogenation; 1.95A {Pseudomonas SP} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=90.82 E-value=2.9 Score=38.31 Aligned_cols=115 Identities=14% Similarity=0.153 Sum_probs=77.0
Q ss_pred cChhhHHH---HHHH-cCCCEEEEcccccccccHHHHHHHHHH-cC--CcEEEEECCCCCHHHHHHhhcc-----CCEEE
Q 023494 125 VEPEQRVP---DFIK-AGADIVSVHCEQSSTIHLHRTLNQIKD-LG--AKAGVVLNPATSLSAIECVLDV-----VDLVL 192 (281)
Q Consensus 125 ~dp~~~i~---~~~~-aGAd~Itvh~Ea~~~~~i~~~l~~ik~-~G--~k~Glai~p~t~ie~~~~~l~~-----vD~Il 192 (281)
.+|+.+++ .+.+ .|.+.+=+|.-..+.+...+.++++|+ .| +.+.+..|.....+...++++. +++|
T Consensus 141 ~~~e~~~~~a~~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i- 219 (370)
T 1nu5_A 141 GDTARDIDSALEMIETRRHNRFKVKLGARTPAQDLEHIRSIVKAVGDRASVRVDVNQGWDEQTASIWIPRLEEAGVELV- 219 (370)
T ss_dssp SCHHHHHHHHHHHHHTTSCSEEEEECSSSCHHHHHHHHHHHHHHHGGGCEEEEECTTCCCHHHHHHHHHHHHHHTCCEE-
T ss_pred CCHHHHHHHHHHHHHhCCccEEEEecCCCChHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCcceE-
Confidence 57776654 3456 899999998653112334467777776 34 6777888877777665555432 4444
Q ss_pred EEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 193 vmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++-.+++++.. +++|..|+.++ .+.+.++++.| +|++.+-
T Consensus 220 ---------EqP~~~~~~~~~~~l~~~~-----~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (370)
T 1nu5_A 220 ---------EQPVPRANFGALRRLTEQN-----GVAILADESLSSLSSAFELARDHAVDAFSLK 269 (370)
T ss_dssp ---------ECCSCTTCHHHHHHHHHHC-----SSEEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred ---------eCCCCcccHHHHHHHHHhC-----CCCEEeCCCCCCHHHHHHHHHhCCCCEEEEc
Confidence 2556555666666666543 47999999986 77888888776 7888774
|
| >2nql_A AGR_PAT_674P, isomerase/lactonizing enzyme; enolase, structural genomics, protein structure initiative, nysgxrc; 1.80A {Agrobacterium tumefaciens str} PDB: 4dn1_A | Back alignment and structure |
|---|
Probab=90.77 E-value=0.95 Score=42.07 Aligned_cols=114 Identities=8% Similarity=-0.008 Sum_probs=77.0
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHHhhcc-----CCEEEE
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAIECVLDV-----VDLVLI 193 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilv 193 (281)
.+|+.+.+ .+.+.|.+.+=+|.-...... .+.++++|+ . ++.+.+..|.....+...++++. +++|
T Consensus 163 ~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~-~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 239 (388)
T 2nql_A 163 RTLKARGELAKYWQDRGFNAFKFATPVADDGP-AAEIANLRQVLGPQAKIAADMHWNQTPERALELIAEMQPFDPWFA-- 239 (388)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEEEGGGCTTCH-HHHHHHHHHHHCTTSEEEEECCSCSCHHHHHHHHHHHGGGCCSCE--
T ss_pred CCHHHHHHHHHHHHHhCCCEEEEeCCCCChHH-HHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHHhhcCCCEE--
Confidence 47776654 456789999999854211345 678888887 3 46788888877777665555432 4444
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++-.+++++. .+++|..|+.+. ++.+.++++.| +|++.+-
T Consensus 240 --------EqP~~~~d~~~~~~l~~~-----~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 289 (388)
T 2nql_A 240 --------EAPVWTEDIAGLEKVSKN-----TDVPIAVGEEWRTHWDMRARIERCRIAIVQPE 289 (388)
T ss_dssp --------ECCSCTTCHHHHHHHHTS-----CCSCEEECTTCCSHHHHHHHHTTSCCSEECCC
T ss_pred --------ECCCChhhHHHHHHHHhh-----CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEec
Confidence 245555555555555543 358999999996 78888888776 7888764
|
| >3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A* | Back alignment and structure |
|---|
Probab=90.71 E-value=5.2 Score=35.61 Aligned_cols=112 Identities=14% Similarity=0.178 Sum_probs=66.9
Q ss_pred HHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHc--CCcEEEEECCC-CCHHHHHHhhc-----cCCEEEEEeec
Q 023494 131 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL--GAKAGVVLNPA-TSLSAIECVLD-----VVDLVLIMSVN 197 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~--G~k~Glai~p~-t~ie~~~~~l~-----~vD~IlvmsV~ 197 (281)
.+.+.+.|||-|-++..-. ..+.+.+.++.+++. |..+=+.+... -..+.+..... .+|+|=- .
T Consensus 117 a~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei~~A~~ia~eaGADfVKT---S 193 (260)
T 3r12_A 117 AIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKIAACVISKLAGAHFVKT---S 193 (260)
T ss_dssp HHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHHHHHHHHHTTCSEEEC---C
T ss_pred HHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCcCEEEc---C
Confidence 5567889999999986531 112344455555554 33332333222 11233333221 3798842 2
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
.||+. ...+++.++.+++... ..+.|-+.|||+ .+++..++++||+-+
T Consensus 194 TGf~~---~GAT~edV~lm~~~vg---~~v~VKaAGGIrt~~~al~mi~aGA~Ri 242 (260)
T 3r12_A 194 TGFGT---GGATAEDVHLMKWIVG---DEMGVKASGGIRTFEDAVKMIMYGADRI 242 (260)
T ss_dssp CSSSS---CCCCHHHHHHHHHHHC---TTSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred CCCCC---CCCCHHHHHHHHHHhC---CCceEEEeCCCCCHHHHHHHHHcCCcee
Confidence 45542 1245667777777663 357899999999 789999999999954
|
| >3no3_A Glycerophosphodiester phosphodiesterase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.89A {Parabacteroides distasonis} SCOP: c.1.18.0 | Back alignment and structure |
|---|
Probab=90.68 E-value=4.8 Score=34.67 Aligned_cols=29 Identities=17% Similarity=0.068 Sum_probs=22.7
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEee---eCccc
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVM---DGRFV 97 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDIm---DG~fv 97 (281)
+-|...+++.+.+.|+|++++||. ||..|
T Consensus 20 pENTl~Af~~A~~~G~d~iE~DV~lT~Dg~~V 51 (238)
T 3no3_A 20 AQNSIRSLERASEIGAYGSEFDVHLTADNVLV 51 (238)
T ss_dssp CTTSHHHHHHHHHTTCSEEEEEEEECTTSCEE
T ss_pred CccHHHHHHHHHHcCCCEEEEEeeEccCCcEE
Confidence 346677888888999999999975 67544
|
| >1rvk_A Isomerase/lactonizing enzyme; enolase superfamily, MR.GI-17937161, NYSGXRC, target T1522, structural genomics, PSI; 1.70A {Agrobacterium tumefaciens} SCOP: c.1.11.2 d.54.1.1 | Back alignment and structure |
|---|
Probab=90.48 E-value=2.6 Score=38.83 Aligned_cols=115 Identities=12% Similarity=0.052 Sum_probs=76.7
Q ss_pred cChhhHHH---HHHHcCCCEEEEccccc------ccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHHhhcc-----
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQS------STIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAIECVLDV----- 187 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~------~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~~~~l~~----- 187 (281)
.+|+.+.+ .+.+.|.+.+=+|.-.. ......+.++++|+ . ++.+.+..|.....+...++++.
T Consensus 148 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~ 227 (382)
T 1rvk_A 148 ATPEDYGRFAETLVKRGYKGIKLHTWMPPVSWAPDVKMDLKACAAVREAVGPDIRLMIDAFHWYSRTDALALGRGLEKLG 227 (382)
T ss_dssp SSHHHHHHHHHHHHHHTCSEEEEECCCTTSTTCCCHHHHHHHHHHHHHHHCTTSEEEEECCTTCCHHHHHHHHHHHHTTT
T ss_pred CCHHHHHHHHHHHHHCCCCEEEEcCCcCccccccchHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHhcC
Confidence 57776654 35678999999986420 12334567777777 3 46778888877777665555432
Q ss_pred CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcC-CcEEEEc
Q 023494 188 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 188 vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aG-AD~~VvG 254 (281)
+++| .|++.+..++-.+++++.. +++|..|+.+. ++.+..+++.| +|++.+-
T Consensus 228 i~~i----------E~P~~~~~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~~i~~~~~d~v~ik 282 (382)
T 1rvk_A 228 FDWI----------EEPMDEQSLSSYKWLSDNL-----DIPVVGPESAAGKHWHRAEWIKAGACDILRTG 282 (382)
T ss_dssp CSEE----------ECCSCTTCHHHHHHHHHHC-----SSCEEECSSCSSHHHHHHHHHHTTCCSEEEEC
T ss_pred CCEE----------eCCCChhhHHHHHHHHhhC-----CCCEEEeCCccCcHHHHHHHHHcCCCCEEeeC
Confidence 3443 2555555566666666543 47999999986 47888888776 7988774
|
| >3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A | Back alignment and structure |
|---|
Probab=90.34 E-value=1.1 Score=38.36 Aligned_cols=116 Identities=19% Similarity=0.211 Sum_probs=69.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEe-------cChh----------
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMI-------VEPE---------- 128 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv-------~dp~---------- 128 (281)
+...++++.++.+.+.|.+ +++ ..++ +.+... ..++++++.. + .+.+|.-. .||.
T Consensus 7 ~p~~~l~~~l~~~~~~G~~-vEl-~~~~---~~~~~~-~~~~~~~~~~~~-~~~~h~~~~~~~l~~~~~~~r~~~~~~~~ 79 (254)
T 3ayv_A 7 FPLSRAEEALPRLQALGLG-AEV-YLDP---ALLEED-ALFQSLRRRFSG-KLSVHLPFWNLDLLSPDPEVRGLTLRRLL 79 (254)
T ss_dssp EEGGGHHHHHHHHHHHTCE-EEE-ECCG---GGTTCH-HHHHHHHHHCCS-CEEEECCCTTCCTTCSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCC-EEE-eccc---cccCcH-HHHHHHHHHhCC-CeEEecCccCCCCCCCCHHHHHHHHHHHH
Confidence 3456889999999999999 887 3332 211111 1455554433 4 56666432 1332
Q ss_pred hHHHHHHHcCCCEEEEccccccc--------------ccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC
Q 023494 129 QRVPDFIKAGADIVSVHCEQSST--------------IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD 189 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~--------------~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD 189 (281)
+.++.+.+.|+..|.+|.-.... +.+.++.+.++++|+++++--.+.+..+.+..+++.++
T Consensus 80 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~l~~~v~ 154 (254)
T 3ayv_A 80 FGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLLLENSHEPHPEALRPVLEAHA 154 (254)
T ss_dssp HHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEEEECSSCSSGGGTHHHHHHHT
T ss_pred HHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEEEcCCCCCCHHHHHHHHHhcC
Confidence 23556678999999998432111 12345566677889999887655555555666666554
|
| >3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=90.31 E-value=7 Score=37.42 Aligned_cols=198 Identities=16% Similarity=0.118 Sum_probs=114.9
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeee------Ccccccc-cCCHHHHHHcCcCCCCC---eeEEEEecCh--
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMD------GRFVPNI-TIGPLVVDALRPVTDLP---LDVHLMIVEP-- 127 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImD------G~fvpn~-~~G~~~I~~ir~~t~~~---idaHLmv~dp-- 127 (281)
=.+|+-+.++.-++-.++.+++.+...| +.+-. |+|+.-. ..-..+++.+-+..+.| +.+||==-.|
T Consensus 22 gi~av~~~n~e~i~Ail~aAee~~sPVI-Ie~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDHg~~~~ 100 (450)
T 3txv_A 22 GIPSICSAHPLVIEAAMLRAHREKAPVL-IEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDHLGPNP 100 (450)
T ss_dssp CEEEECCCCHHHHHHHHHHHHHSCSCEE-EEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSGG
T ss_pred EEEEeCcCCHHHHHHHHHHHHHhCCCEE-EEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCCCCCcc
Confidence 3467777788888888899998877765 44443 2333100 00123344443334566 5777655444
Q ss_pred -------------hhHHHHHHHcCCCEEEEcccccc----cc--------cHHHHHHHHHHcCCcE-----EEEECC---
Q 023494 128 -------------EQRVPDFIKAGADIVSVHCEQSS----TI--------HLHRTLNQIKDLGAKA-----GVVLNP--- 174 (281)
Q Consensus 128 -------------~~~i~~~~~aGAd~Itvh~Ea~~----~~--------~i~~~l~~ik~~G~k~-----Glai~p--- 174 (281)
.+.+..++++|...|.+=+-..+ .. ...++++.+++.+... +-.+..
T Consensus 101 w~~~~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~p~eeNi~lt~evva~rtaeL~~~A~~~~~~~g~~e~~yviGtEvp 180 (450)
T 3txv_A 101 WKHLPADEAMAKAEAMITAYAKAGFTKLHLDTSMGCAGEPTALPDATTAARAARLAAVAEDAVGGRGGVLPVYIIGTEVP 180 (450)
T ss_dssp GTTSCHHHHHHHHHHHHHHHHTTTCCEEEECCCBCCSSSCSBCCHHHHHHHHHHHHHHHHHTC------CCEEEEECC--
T ss_pred cccccHHHHHHHHHHHHHHHHHcCCCEEEECCCCCchhhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeeeecC
Confidence 45788899999888776543211 11 1234457777754443 222222
Q ss_pred -------------CCCHHHHHHhhcc---------CC----EEEEEeecCCCC-CCccc-hhHHHHHHHHHHHhhhcCCC
Q 023494 175 -------------ATSLSAIECVLDV---------VD----LVLIMSVNPGFG-GQSFI-ESQVKKISDLRRMCLEKGVN 226 (281)
Q Consensus 175 -------------~t~ie~~~~~l~~---------vD----~IlvmsV~pG~~-GQ~f~-~~~l~kI~~lr~l~~~~~~~ 226 (281)
-|+.+..+++++. +| .+.-+-|.||.. |.... ..-.+++++|++.+++. .+
T Consensus 181 vpGGa~~~~~~~~~T~PeeA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpGt~f~~~~v~~y~~e~~~~L~~~v~~~-P~ 259 (450)
T 3txv_A 181 IPGGALEELDTLEVTAPEAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFGNENVIAYDRARAEKLSATLGQL-HG 259 (450)
T ss_dssp -----------CCCCCHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCSCEECSSCEECCCTTTTSHHHHGGGTS-TT
T ss_pred CCCccccccccCCCCCHHHHHHHHHHHHHHHHHhCcccccCceeEEEecCCcccCCCCCCCCCHHHHHHHHHHhccC-CC
Confidence 2556666666542 32 233346788863 33322 22355777777776431 11
Q ss_pred CeEEEec--CCChhcHHHHHHcCCcEEEEcccccC
Q 023494 227 PWIEVDG--GVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 227 ~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+-+.--. |++.++++++++.|..++=||++++.
T Consensus 260 LVlhghStDy~~~e~l~~~V~~GiaklNVgp~Lt~ 294 (450)
T 3txv_A 260 MVFEAHSTDYQTPDALRELVADGFAILKVGPGLTF 294 (450)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHcCCcEEEEChHHHH
Confidence 3344444 67899999999999999999999874
|
| >2qgy_A Enolase from the environmental genome shotgun sequencing of the sargasso SEA; structural genomics, unknown function, PSI-2; 1.80A {Environmental sample} | Back alignment and structure |
|---|
Probab=90.25 E-value=1.7 Score=40.43 Aligned_cols=116 Identities=7% Similarity=0.038 Sum_probs=77.9
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHHhhcc-----CCEEEE
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAIECVLDV-----VDLVLI 193 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilv 193 (281)
.+|+.+.+ .+.+.|.+.+=+|.-..+.....+.++++|+ . ++.+.+..|.....+...++++. +++|
T Consensus 148 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 225 (391)
T 2qgy_A 148 KDTNDYLRQIEKFYGKKYGGIKIYPMLDSLSISIQFVEKVREIVGDELPLMLDLAVPEDLDQTKSFLKEVSSFNPYWI-- 225 (391)
T ss_dssp CCHHHHHHHHHHHHHTTCSCEEECCCCSSHHHHHHHHHHHHHHHCSSSCEEEECCCCSCHHHHHHHHHHHGGGCCSEE--
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEccCCChHHHHHHHHHHHHHHhCCCCEEEEEcCCCCCHHHHHHHHHHHHhcCCCeE--
Confidence 57776654 4567899999998531111334567788887 3 57788888887777665555432 4444
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGS 255 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGS 255 (281)
.|++.+..++-.+++++.. +++|..|+.+. ++.+.++++.| +|++.+--
T Consensus 226 --------EqP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik~ 276 (391)
T 2qgy_A 226 --------EEPVDGENISLLTEIKNTF-----NMKVVTGEKQSGLVHFRELISRNAADIFNPDI 276 (391)
T ss_dssp --------ECSSCTTCHHHHHHHHHHC-----SSCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred --------eCCCChhhHHHHHHHHhhC-----CCCEEEcCCcCCHHHHHHHHHcCCCCEEEECc
Confidence 2455555566666666543 47999999996 78888888777 78887643
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=6.4 Score=35.65 Aligned_cols=151 Identities=13% Similarity=0.124 Sum_probs=88.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-----hHHHHHHHcCCCEEEE
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-----QRVPDFIKAGADIVSV 144 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-----~~i~~~~~aGAd~Itv 144 (281)
.++.+.++.+...+.|. ++|-||.--..-.-...+...|+ .++++..+||-+.|-- .++..+.++|.+.|.+
T Consensus 29 ~~l~~~~~~L~~~~pd~--vsVT~~~~g~~r~~t~~~a~~i~-~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLa 105 (310)
T 3apt_A 29 EALFRTLEELKAFRPAF--VSITYGAMGSTRERSVAWAQRIQ-SLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLA 105 (310)
T ss_dssp HHHHHHHHHHGGGCCSE--EEECCCSTTCSHHHHHHHHHHHH-HTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHHHhcCCCCE--EEEecCCCCCcchhHHHHHHHHH-HhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEE
Confidence 35667788887777887 47777521110111334566677 4689999999996542 2455677899987765
Q ss_pred c-cccc-----------ccccHHHHHHHHHHc-C--CcEEEEECCCC-----CH-HHHHHhhc----cCCEEEEEeecCC
Q 023494 145 H-CEQS-----------STIHLHRTLNQIKDL-G--AKAGVVLNPAT-----SL-SAIECVLD----VVDLVLIMSVNPG 199 (281)
Q Consensus 145 h-~Ea~-----------~~~~i~~~l~~ik~~-G--~k~Glai~p~t-----~i-e~~~~~l~----~vD~IlvmsV~pG 199 (281)
. ++.. ...+..++++.+|+. | ..+|++.+|.. +. .++..+.. .+|++.- .+.
T Consensus 106 LrGD~p~~~g~~~~~~~~f~~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf~iT---Q~f 182 (310)
T 3apt_A 106 LRGDPPRGERVFRPHPEGFRYAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAIT---QLF 182 (310)
T ss_dssp ECCCCSTTCCSCCCCTTSCSSHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSEEEE---CCC
T ss_pred EcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEe---ccc
Confidence 4 2211 022577888888887 6 79999999841 22 23333333 3787752 222
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
|..+.+ .++.+.+.+.|.+++| -.||-
T Consensus 183 -----fD~~~~---~~f~~~~r~~Gi~vPI--i~GIm 209 (310)
T 3apt_A 183 -----FNNAHY---FGFLERARRAGIGIPI--LPGIM 209 (310)
T ss_dssp -----SCHHHH---HHHHHHHHHTTCCSCE--ECEEC
T ss_pred -----CCHHHH---HHHHHHHHHcCCCCeE--EEEec
Confidence 334443 3334444445555554 45554
|
| >1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2 | Back alignment and structure |
|---|
Probab=90.12 E-value=4.8 Score=38.14 Aligned_cols=126 Identities=14% Similarity=0.256 Sum_probs=73.1
Q ss_pred HHHHHcCcCCCCC--eeEEEEecChh----hHHHHHHHcCCCEEEEcccccc------------cccHHHHHHHHHHcCC
Q 023494 105 LVVDALRPVTDLP--LDVHLMIVEPE----QRVPDFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGA 166 (281)
Q Consensus 105 ~~I~~ir~~t~~~--idaHLmv~dp~----~~i~~~~~aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~ 166 (281)
++++.+++..+.. ..+.+ -.||. +.++.+.++|.+.|++..++.+ .++..+.++.+++.|+
T Consensus 125 ~ll~~i~~~~~~~~~~eiti-e~~p~~l~~e~l~~L~~~G~~rislGvQS~~~~~l~~i~R~~~~~~~~~ai~~~r~~G~ 203 (457)
T 1olt_A 125 RLMKLLRENFQFNADAEISI-EVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGF 203 (457)
T ss_dssp HHHHHHHHHSCEEEEEEEEE-EECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCCCCCcEEEE-EEccCcCCHHHHHHHHHcCCCEEEEeeccCCHHHHHHhCCCCCHHHHHHHHHHHHHcCC
Confidence 3455555532221 22333 24664 5788899999999999987641 1235677888899999
Q ss_pred c-EEEEE---CCCCCHHHHHHhhc-----cCCEEEEEee--cCCCC-CCcc-----c---hhHHHHHHHHHHHhhhcCCC
Q 023494 167 K-AGVVL---NPATSLSAIECVLD-----VVDLVLIMSV--NPGFG-GQSF-----I---ESQVKKISDLRRMCLEKGVN 226 (281)
Q Consensus 167 k-~Glai---~p~t~ie~~~~~l~-----~vD~IlvmsV--~pG~~-GQ~f-----~---~~~l~kI~~lr~l~~~~~~~ 226 (281)
. +.+.+ -|....+.+.+-++ .+|.|.+... .||.. .|.. . .+..+..+.+.+.+.+.|+.
T Consensus 204 ~~v~~dlI~GlPget~e~~~~tl~~~~~l~~~~i~~y~l~~~p~t~~~~~~~~~~~lp~~~~~~~~~~~~~~~L~~~Gy~ 283 (457)
T 1olt_A 204 TSTNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQ 283 (457)
T ss_dssp CSCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCE
T ss_pred CcEEEEEEcCCCCCCHHHHHHHHHHHHhcCcCEEEeecCcCCcCchhHhhccccCCCcCHHHHHHHHHHHHHHHHHCCCe
Confidence 7 76654 35656655555443 2788877654 47642 2211 1 22344556666666665542
Q ss_pred CeEEEe
Q 023494 227 PWIEVD 232 (281)
Q Consensus 227 ~~I~VD 232 (281)
.++++
T Consensus 284 -~yeis 288 (457)
T 1olt_A 284 -FIGMD 288 (457)
T ss_dssp -EEETT
T ss_pred -EEEec
Confidence 34443
|
| >2p8b_A Mandelate racemase/muconate lactonizing enzyme family protein; enolase superfamily, prediction of function; HET: NSK; 1.70A {Bacillus cereus atcc 14579} PDB: 2p88_A* 2p8c_A* | Back alignment and structure |
|---|
Probab=89.96 E-value=1.1 Score=41.25 Aligned_cols=123 Identities=16% Similarity=0.256 Sum_probs=79.4
Q ss_pred CeeEEEEecChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHH-Hhhcc--
Q 023494 117 PLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIE-CVLDV-- 187 (281)
Q Consensus 117 ~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~-~~l~~-- 187 (281)
++...+-..+|+.+.+ .+.+.|.+.+=+|.-. +.....+.++++|+. ++.+.+..|.....+... ++++.
T Consensus 132 ~~~~~i~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~~l~ 210 (369)
T 2p8b_A 132 PVTHVLSIADPENMAEEAASMIQKGYQSFKMKVGT-NVKEDVKRIEAVRERVGNDIAIRVDVNQGWKNSANTLTALRSLG 210 (369)
T ss_dssp ECCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTTTBSHHHHHHHHHTST
T ss_pred eeeEEecCCChHHHHHHHHHHHHcCcCEEEEEeCC-CHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 3334344457876654 4567899999998643 223344677777763 466777777776666555 55543
Q ss_pred ---CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcc
Q 023494 188 ---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGS 255 (281)
Q Consensus 188 ---vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGS 255 (281)
+++| .|++.+..++-++++++. .+++|..|+.++ ++.+.++++.| +|++.+--
T Consensus 211 ~~~i~~i----------EqP~~~~d~~~~~~l~~~-----~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 268 (369)
T 2p8b_A 211 HLNIDWI----------EQPVIADDIDAMAHIRSK-----TDLPLMIDEGLKSSREMRQIIKLEAADKVNIKL 268 (369)
T ss_dssp TSCCSCE----------ECCBCTTCHHHHHHHHHT-----CCSCEEESTTCCSHHHHHHHHHHTCCSEEEECH
T ss_pred hCCCcEE----------ECCCCcccHHHHHHHHHh-----CCCCEEeCCCCCCHHHHHHHHHhCCCCEEEeec
Confidence 2333 356655556666666653 257899999986 77888887765 89888753
|
| >2hzg_A Mandelate racemase/muconate lactonizing enzyme/EN superfamily; structural genomics, predicted mandelate racemase, PSI; 2.02A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=89.93 E-value=3.1 Score=38.68 Aligned_cols=126 Identities=12% Similarity=0.051 Sum_probs=80.5
Q ss_pred CCeeEEEE-ecChhhHHH---HHHHcCCCEEEEc---cccccc-ccHHHHHHHHHHc---CCcEEEEECCCC--CHHHHH
Q 023494 116 LPLDVHLM-IVEPEQRVP---DFIKAGADIVSVH---CEQSST-IHLHRTLNQIKDL---GAKAGVVLNPAT--SLSAIE 182 (281)
Q Consensus 116 ~~idaHLm-v~dp~~~i~---~~~~aGAd~Itvh---~Ea~~~-~~i~~~l~~ik~~---G~k~Glai~p~t--~ie~~~ 182 (281)
+|+.+.+. ..+|+.+.+ .+.+.|.+.+=+| .-. +. ....+.++++|+. ++.+.+..|... ..+...
T Consensus 134 vp~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~spvG~-~~~~~~~e~v~avr~a~G~d~~l~vDan~~~~~~~~~a~ 212 (401)
T 2hzg_A 134 KRPYASLLFGDTPQETLERARAARRDGFAAVKFGWGPIGR-GTVAADADQIMAAREGLGPDGDLMVDVGQIFGEDVEAAA 212 (401)
T ss_dssp BEEEEEEECCSSHHHHHHHHHHHHHTTCSEEEEESTTTTS-SCHHHHHHHHHHHHHHHCSSSEEEEECTTTTTTCHHHHH
T ss_pred eEeeEEcCCCCCHHHHHHHHHHHHHhCCCeEEEcCCCCCC-CHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCCHHHHH
Confidence 45555443 357877654 3567899999998 321 12 3345677777763 467778888777 776655
Q ss_pred Hhhcc-----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcc
Q 023494 183 CVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGS 255 (281)
Q Consensus 183 ~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGS 255 (281)
++++. +++| .|++.+..++-++++++. ..+++|..|+.+. ++.+..+++.| +|++.+--
T Consensus 213 ~~~~~l~~~~i~~i----------EqP~~~~d~~~~~~l~~~----~~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~ 278 (401)
T 2hzg_A 213 ARLPTLDAAGVLWL----------EEPFDAGALAAHAALAGR----GARVRIAGGEAAHNFHMAQHLMDYGRIGFIQIDC 278 (401)
T ss_dssp TTHHHHHHTTCSEE----------ECCSCTTCHHHHHHHHTT----CCSSEEEECTTCSSHHHHHHHHHHSCCSEEEECH
T ss_pred HHHHHHHhcCCCEE----------ECCCCccCHHHHHHHHhh----CCCCCEEecCCcCCHHHHHHHHHCCCCCEEEeCc
Confidence 55432 4444 244555555555555530 2358999999996 78888888766 89988753
Q ss_pred c
Q 023494 256 A 256 (281)
Q Consensus 256 a 256 (281)
.
T Consensus 279 ~ 279 (401)
T 2hzg_A 279 G 279 (401)
T ss_dssp H
T ss_pred c
Confidence 3
|
| >2pp0_A L-talarate/galactarate dehydratase; enolase superfamily, LYA; 2.20A {Salmonella typhimurium} PDB: 2pp1_A* 2pp3_A* | Back alignment and structure |
|---|
Probab=89.75 E-value=1.6 Score=40.73 Aligned_cols=113 Identities=10% Similarity=0.012 Sum_probs=75.5
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc-C--CcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-G--AKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G--~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
+|+.+.+ .+.+.|.+.+=+|.-........+.++.+|+. | +.+.+..|.....+...++++. +++|
T Consensus 175 ~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~~ai~~~~~l~~~~i~~i--- 251 (398)
T 2pp0_A 175 PLDQVLKNVVISRENGIGGIKLKVGQPNCAEDIRRLTAVREALGDEFPLMVDANQQWDRETAIRMGRKMEQFNLIWI--- 251 (398)
T ss_dssp CHHHHHHHHHHHHHTTCSCEEEECCCSCHHHHHHHHHHHHHHHCSSSCEEEECTTCSCHHHHHHHHHHHGGGTCSCE---
T ss_pred CHHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCcee---
Confidence 6776654 35678999999986421123345677788775 4 6778888877777665555443 3433
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.|++.+..++-.+++++.. +++|..|+.+. ++.+..+++.| +|++.+
T Consensus 252 -------EqP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 300 (398)
T 2pp0_A 252 -------EEPLDAYDIEGHAQLAAAL-----DTPIATGEMLTSFREHEQLILGNASDFVQP 300 (398)
T ss_dssp -------ECCSCTTCHHHHHHHHHHC-----SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred -------eCCCChhhHHHHHHHHhhC-----CCCEEecCCcCCHHHHHHHHHcCCCCEEEe
Confidence 3555555566666666543 47899999986 78888888777 787755
|
| >4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B* | Back alignment and structure |
|---|
Probab=89.60 E-value=0.78 Score=45.09 Aligned_cols=121 Identities=14% Similarity=0.099 Sum_probs=79.9
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH--HHHHHHcCCCEEEEcccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR--VPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~--i~~~~~aGAd~Itvh~Ea~~ 150 (281)
.+-++.|.++|+|.|-+|...||-.- =.+.++.||+..+ ++.++.-|...+ .+.+.++|||.|-+..-..+
T Consensus 283 ~eR~~aLv~AGvD~iviD~ahGhs~~----v~~~i~~ik~~~p---~~~viaGNVaT~e~a~~Li~aGAD~vkVGiGpGS 355 (556)
T 4af0_A 283 KDRLKLLAEAGLDVVVLDSSQGNSVY----QIEFIKWIKQTYP---KIDVIAGNVVTREQAAQLIAAGADGLRIGMGSGS 355 (556)
T ss_dssp HHHHHHHHHTTCCEEEECCSCCCSHH----HHHHHHHHHHHCT---TSEEEEEEECSHHHHHHHHHHTCSEEEECSSCST
T ss_pred HHHHHHHHhcCCcEEEEeccccccHH----HHHHHHHHHhhCC---cceEEeccccCHHHHHHHHHcCCCEEeecCCCCc
Confidence 44577888999999999999886321 2467777777421 344566554433 55678999999998853210
Q ss_pred -----------ccc---HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 151 -----------TIH---LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 151 -----------~~~---i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
.+. +.++.+.++++|+.+.-.=.-.++-...+.+.-.+|.|++.+...|.
T Consensus 356 iCtTr~v~GvG~PQ~tAi~~~a~~a~~~~vpvIADGGI~~sGDi~KAlaaGAd~VMlGsllAGt 419 (556)
T 4af0_A 356 ICITQEVMAVGRPQGTAVYAVAEFASRFGIPCIADGGIGNIGHIAKALALGASAVMMGGLLAGT 419 (556)
T ss_dssp TBCCTTTCCSCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ccccccccCCCCcHHHHHHHHHHHHHHcCCCEEecCCcCcchHHHHHhhcCCCEEEEchhhccc
Confidence 111 44566777788876554433345667777787789999987665554
|
| >2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A* | Back alignment and structure |
|---|
Probab=89.54 E-value=1.7 Score=38.11 Aligned_cols=74 Identities=15% Similarity=0.263 Sum_probs=46.4
Q ss_pred EEEEecChhh-----HHHHHHHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 120 VHLMIVEPEQ-----RVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 120 aHLmv~dp~~-----~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
.|++.-||.. .++.+.++|+|.|-+..... +.+...++++.+|+..+-+.+...-+.++ ...+|.+++
T Consensus 10 ~~it~gDP~~~~t~~~~~~l~~~GaD~IelG~S~g~t~~~~~~~v~~ir~~~~Pivl~~y~~n~i------~~gvDg~ii 83 (234)
T 2f6u_A 10 RHITKLDPDRTNTDEIIKAVADSGTDAVMISGTQNVTYEKARTLIEKVSQYGLPIVVEPSDPSNV------VYDVDYLFV 83 (234)
T ss_dssp CEEEEECTTSCCCHHHHHHHHTTTCSEEEECCCTTCCHHHHHHHHHHHTTSCCCEEECCSSCCCC------CCCSSEEEE
T ss_pred eEEEeeCCCccccHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHHHHhcCCCCCEEEecCCcchh------hcCCCEEEE
Confidence 4677778853 57788899999999997532 13346677777776444444432221233 345777777
Q ss_pred EeecCC
Q 023494 194 MSVNPG 199 (281)
Q Consensus 194 msV~pG 199 (281)
+.+.+.
T Consensus 84 pdLp~e 89 (234)
T 2f6u_A 84 PTVLNS 89 (234)
T ss_dssp EEETTB
T ss_pred cccCCC
Confidence 777554
|
| >3i4k_A Muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9450D, isomerase, PSI-2, protein structure initiative; 2.20A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=89.54 E-value=4.8 Score=37.26 Aligned_cols=127 Identities=16% Similarity=0.215 Sum_probs=82.8
Q ss_pred CCeeEEEEecChhhHHHHH---HHc-CCCEEEEcccccccccHHHHHHHHHHc-C--CcEEEEECCCCCHHHHHHhhcc-
Q 023494 116 LPLDVHLMIVEPEQRVPDF---IKA-GADIVSVHCEQSSTIHLHRTLNQIKDL-G--AKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~~~---~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~~-G--~k~Glai~p~t~ie~~~~~l~~- 187 (281)
+++...+-..+|++.++.+ .+. |...+=+..-....+.-.+.++++|+. | +.+.+..|.....+....+++.
T Consensus 138 v~~~~t~~~~~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~A~~~~~~l 217 (383)
T 3i4k_A 138 VDVTWALGVLPLDVAVAEIEERIEEFGNRSFKLKMGAGDPAEDTRRVAELAREVGDRVSLRIDINARWDRRTALHYLPIL 217 (383)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHHHCCSEEEEECCSSCHHHHHHHHHHHHHTTTTTSEEEEECTTCSCHHHHHHHHHHH
T ss_pred EEEeEEeeCCCHHHHHHHHHHHHHhcCCcEEEEeeCCCCHHHHHHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3444455556787665543 455 999998875321122334567777775 4 6788888888887765555432
Q ss_pred ----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccc
Q 023494 188 ----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAV 257 (281)
Q Consensus 188 ----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaI 257 (281)
+++| .|++.+..++-++++++.. +++|..|+.+. .+.+..+++.| +|++.+--.-
T Consensus 218 ~~~~i~~i----------EqP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k~~~ 278 (383)
T 3i4k_A 218 AEAGVELF----------EQPTPADDLETLREITRRT-----NVSVMADESVWTPAEALAVVKAQAADVIALKTTK 278 (383)
T ss_dssp HHTTCCEE----------ESCSCTTCHHHHHHHHHHH-----CCEEEESTTCSSHHHHHHHHHHTCCSEEEECTTT
T ss_pred HhcCCCEE----------ECCCChhhHHHHHHHHhhC-----CCCEEecCccCCHHHHHHHHHcCCCCEEEEcccc
Confidence 4444 2566665566667776654 37999999987 77888888776 7988876433
|
| >1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=89.50 E-value=1.2 Score=39.30 Aligned_cols=81 Identities=16% Similarity=0.115 Sum_probs=54.8
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
+|.+..+.|... ++.|-+.+-+.-|.| .++.++.+++.. ++++..-++|. ...+.++..+|||.+.+
T Consensus 66 ~p~~~A~~~~~~GA~~isvlt~~~~f~G------~~~~l~~i~~~v-----~lPvl~kdfI~d~~qi~~a~~~GAD~VlL 134 (254)
T 1vc4_A 66 DPVEAALAYARGGARAVSVLTEPHRFGG------SLLDLKRVREAV-----DLPLLRKDFVVDPFMLEEARAFGASAALL 134 (254)
T ss_dssp CHHHHHHHHHHTTCSEEEEECCCSSSCC------CHHHHHHHHHHC-----CSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEecchhhhcc------CHHHHHHHHHhc-----CCCEEECCcCCCHHHHHHHHHcCCCEEEE
Confidence 345666666654 788877654333344 244556666542 47888888877 54899999999999999
Q ss_pred cccccCCCCHHHHHH
Q 023494 254 GSAVFGAKDYAEAIK 268 (281)
Q Consensus 254 GSaIf~a~dp~~~~~ 268 (281)
|.+.+. +..++.++
T Consensus 135 ~~~~l~-~~l~~l~~ 148 (254)
T 1vc4_A 135 IVALLG-ELTGAYLE 148 (254)
T ss_dssp EHHHHG-GGHHHHHH
T ss_pred CccchH-HHHHHHHH
Confidence 988776 55555444
|
| >3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis} | Back alignment and structure |
|---|
Probab=89.48 E-value=10 Score=34.48 Aligned_cols=187 Identities=14% Similarity=0.115 Sum_probs=110.8
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc--
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA-- 137 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a-- 137 (281)
|..=+-++..+.-.++.+++.+...| +-+-.|. |.+. .+ ...+..+-+..+.|+-+||==..-...+..++++
T Consensus 30 ~AfNv~n~e~~~Avl~AAee~~sPvI-lq~s~g~~~y~g~-~~-~~~~~~~A~~~~VPVaLHlDHg~~~e~i~~ai~~~~ 106 (306)
T 3pm6_A 30 PAICVYNLEGILAIIRAAEHKRSPAM-ILLFPWAIQYADS-LL-VRTAASACRAASVPITLHLDHAQDPEIIKRAADLSR 106 (306)
T ss_dssp EEEECSSHHHHHHHHHHHHHTTCCEE-EEECHHHHHHHTT-HH-HHHHHHHHHHCSSCEEEEEEEECCHHHHHHHHHTC-
T ss_pred EEEeeCCHHHHHHHHHHHHHhCCCEE-EEcChhHHhhccH-HH-HHHHHHHHHHCCCCEEEEcCCCCCHHHHHHHHHhhh
Confidence 33333344444456677788887765 4444432 2210 01 1223333333679999999665444578888998
Q ss_pred ------CCCEEEEcccccc----cccHHHHHHHHHHcCCcEEEEE-----------C------CCCCHHHHHHhhc-cCC
Q 023494 138 ------GADIVSVHCEQSS----TIHLHRTLNQIKDLGAKAGVVL-----------N------PATSLSAIECVLD-VVD 189 (281)
Q Consensus 138 ------GAd~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~Glai-----------~------p~t~ie~~~~~l~-~vD 189 (281)
|.+.|-+=.-..+ ...-+++++.+++.|+-+=.-+ + .-|..++..++.+ .+|
T Consensus 107 ~~~~~~GFtSVMiDgS~~p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edgv~~~~~~~~~yT~Peea~~Fv~TgvD 186 (306)
T 3pm6_A 107 SETHEPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESEEFVATGIN 186 (306)
T ss_dssp -----CCCSEEEECCTTSCHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHHHHHTTTCS
T ss_pred hccCCCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccCCCHHHHHHHHHcCCC
Confidence 8887776543222 1224467777887776552110 1 1366777777764 388
Q ss_pred EEEE--EeecCCCC---CCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEccccc
Q 023494 190 LVLI--MSVNPGFG---GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 190 ~Ilv--msV~pG~~---GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
.+.+ .++| |.. +.+.. +++|+++++.+.. ++++..=|| +..+.++++++.|+--+=+++.+.
T Consensus 187 ~LAvaiGt~H-G~Yk~~~p~Ld---~~~L~~I~~~v~~---~vpLVlHGgSG~p~e~i~~ai~~GV~KiNi~Tdl~ 255 (306)
T 3pm6_A 187 WLAPAFGNVH-GNYGPRGVQLD---YERLQRINEAVGE---RVGLVLHGADPFTKEIFEKCIERGVAKVNVNRAVN 255 (306)
T ss_dssp EECCCSSCCS-SCCCTTCCCCC---HHHHHHHHHHHTT---TSEEEECSCTTCCHHHHHHHHHTTEEEEEESHHHH
T ss_pred EEEEEcCccc-cCcCCCCCccC---HHHHHHHHHHhCC---CCCEEeeCCCCCCHHHHHHHHHcCCeEEEeChHHH
Confidence 6643 2333 221 12233 5566666666531 478888775 558899999999999999998764
|
| >2gdq_A YITF; mandelate racemase/muconate lactonizing enzyme, TIM-barrel, octamer, structural genomics, PSI; 1.80A {Bacillus subtilis subsp} SCOP: c.1.11.2 d.54.1.1 PDB: 2gge_A | Back alignment and structure |
|---|
Probab=89.41 E-value=1.1 Score=41.48 Aligned_cols=116 Identities=12% Similarity=0.082 Sum_probs=74.6
Q ss_pred cCh---hhHHHH---HHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc---C-CEE
Q 023494 125 VEP---EQRVPD---FIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV---V-DLV 191 (281)
Q Consensus 125 ~dp---~~~i~~---~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~---v-D~I 191 (281)
.+| +.+.+. +.+.|.+.+=+|.-..+.....+.++++|+. ++.+.+..|.....+....+++. . +..
T Consensus 135 ~~~~~~e~~~~~a~~~~~~Gf~~vKik~g~~~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~~i~ 214 (382)
T 2gdq_A 135 DSPQWISRSVSNVEAQLKKGFEQIKVKIGGTSFKEDVRHINALQHTAGSSITMILDANQSYDAAAAFKWERYFSEWTNIG 214 (382)
T ss_dssp SSTTHHHHHHHHHHHHHTTTCCEEEEECSSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHTTHHHHTTCSCEE
T ss_pred CCcccHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHhhccCCe
Confidence 577 766543 4678999999986421123344667777763 46778888887777766665543 2 222
Q ss_pred EEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 192 LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 192 lvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
. ++ |++.+..++-.+++++. .+++|..|+.+. ++.+..+++.| +|++.+
T Consensus 215 ~---iE-----qP~~~~d~~~~~~l~~~-----~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 265 (382)
T 2gdq_A 215 W---LE-----EPLPFDQPQDYAMLRSR-----LSVPVAGGENMKGPAQYVPLLSQRCLDIIQP 265 (382)
T ss_dssp E---EE-----CCSCSSCHHHHHHHHTT-----CSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred E---EE-----CCCCcccHHHHHHHHhh-----CCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 2 22 44545455555555543 357999999997 78888888876 787765
|
| >3mz2_A Glycerophosphoryl diester phosphodiesterase; structural genomics, joint center for structural genomics; HET: MSE PE4; 1.55A {Parabacteroides distasonis} | Back alignment and structure |
|---|
Probab=89.35 E-value=5.2 Score=35.75 Aligned_cols=29 Identities=14% Similarity=-0.065 Sum_probs=22.2
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEee---eCccc
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVM---DGRFV 97 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDIm---DG~fv 97 (281)
+-|...+++.+.+.|+|++++||. ||.+|
T Consensus 46 pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~V 77 (292)
T 3mz2_A 46 PENSMETFENTLSYTPATFEIDPRLTKDSVIV 77 (292)
T ss_dssp CTTCHHHHHHHHHHCCCEEEECEEECTTCCEE
T ss_pred CccHHHHHHHHHHcCCCEEEEEEeECCCCcEE
Confidence 346667788888899999999974 66544
|
| >3jva_A Dipeptide epimerase; enolase superfamily, isomerase; 1.70A {Enterococcus faecalis V583} PDB: 3jw7_A* 3jzu_A* 3k1g_A* 3kum_A* | Back alignment and structure |
|---|
Probab=89.33 E-value=3 Score=38.16 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=79.5
Q ss_pred eeEEEEecChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccCCEE
Q 023494 118 LDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVVDLV 191 (281)
Q Consensus 118 idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~vD~I 191 (281)
....+-..+|+.+.+ .+.+.|...+=+..-.. .+.-.+.++++|+ .++.+.+..|.....+....+++..+-.
T Consensus 131 ~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~g~~-~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~L~~~ 209 (354)
T 3jva_A 131 TDITLGIDEPNVMAQKAVEKVKLGFDTLKIKVGTG-IEADIARVKAIREAVGFDIKLRLDANQAWTPKDAVKAIQALADY 209 (354)
T ss_dssp CCEEECSCCHHHHHHHHHHHHHTTCSEEEEECCSC-HHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHTTTS
T ss_pred eeEEeCCCCHHHHHHHHHHHHHhCCCeEEEEeCCC-HHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 344455578876654 45578999998886431 2223456677776 3567788888888887665555432111
Q ss_pred EEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 192 LIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 192 lvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
-+.-++ |++.+..++-++++++.. +++|..|+.+. .+.+..+++.| +|++.+-
T Consensus 210 ~i~~iE-----qP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 264 (354)
T 3jva_A 210 QIELVE-----QPVKRRDLEGLKYVTSQV-----NTTIMADESCFDAQDALELVKKGTVDVINIK 264 (354)
T ss_dssp CEEEEE-----CCSCTTCHHHHHHHHHHC-----SSEEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred CCCEEE-----CCCChhhHHHHHHHHHhC-----CCCEEEcCCcCCHHHHHHHHHcCCCCEEEEC
Confidence 111112 556555566666666543 47999999988 77787777764 7988775
|
| >1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A* | Back alignment and structure |
|---|
Probab=89.31 E-value=2.5 Score=40.80 Aligned_cols=120 Identities=15% Similarity=0.080 Sum_probs=69.9
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
.+..+.++.+.++|+|.+|+|..-|+ | .+-.+.++++|+.+ +.|+.+. -+.+ .+..+.+.++|+|+|.+..+.
T Consensus 254 ~~~~~~a~~~~~aG~d~v~i~~~~G~--~--~~~~~~i~~i~~~~~~~pvi~~-~v~t-~~~a~~l~~aGad~I~vg~~~ 327 (514)
T 1jcn_A 254 EDDKYRLDLLTQAGVDVIVLDSSQGN--S--VYQIAMVHYIKQKYPHLQVIGG-NVVT-AAQAKNLIDAGVDGLRVGMGC 327 (514)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCCC--S--HHHHHHHHHHHHHCTTCEEEEE-EECS-HHHHHHHHHHTCSEEEECSSC
T ss_pred hhhHHHHHHHHHcCCCEEEeeccCCc--c--hhHHHHHHHHHHhCCCCceEec-ccch-HHHHHHHHHcCCCEEEECCCC
Confidence 34567788899999999999876553 2 12357789998875 6777652 1233 346778889999999883221
Q ss_pred c-------------ccccHHHHHHHHHH-cCCcEEEEECCCCCHHHHHHhhccCCEEEEEe
Q 023494 149 S-------------STIHLHRTLNQIKD-LGAKAGVVLNPATSLSAIECVLDVVDLVLIMS 195 (281)
Q Consensus 149 ~-------------~~~~i~~~l~~ik~-~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvms 195 (281)
. +.......+..+++ .++.+..+=.-.++.+..+.+...+|.|.+.+
T Consensus 328 G~~~~t~~~~~~g~~~~~~~~~~~~~~~~~~ipVia~GGI~~~~di~kala~GAd~V~iG~ 388 (514)
T 1jcn_A 328 GSICITQEVMACGRPQGTAVYKVAEYARRFGVPIIADGGIQTVGHVVKALALGASTVMMGS 388 (514)
T ss_dssp SCCBTTBCCCSCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEEST
T ss_pred CcccccccccCCCccchhHHHHHHHHHhhCCCCEEEECCCCCHHHHHHHHHcCCCeeeECH
Confidence 0 01112233444443 35444332111233333333444599998754
|
| >3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A | Back alignment and structure |
|---|
Probab=89.26 E-value=1.5 Score=38.07 Aligned_cols=138 Identities=10% Similarity=0.120 Sum_probs=74.8
Q ss_pred EecChh---hHHHHHHHcCCCEEEE-----cccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCE
Q 023494 123 MIVEPE---QRVPDFIKAGADIVSV-----HCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDL 190 (281)
Q Consensus 123 mv~dp~---~~i~~~~~aGAd~Itv-----h~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~ 190 (281)
+..|.. +-++.+.++|+|++++ |.-.. ...=...++.+|+. .+...+-+..++|...++.+.+ .+|+
T Consensus 12 l~~D~~~l~~~i~~l~~~g~d~~h~DVmDg~Fvpn-~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~ 90 (228)
T 3ovp_A 12 LNSDLANLGAECLRMLDSGADYLHLDVMDGHFVPN-ITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQ 90 (228)
T ss_dssp TTSCGGGHHHHHHHHHHTTCSCEEEEEEBSSSSSC-BCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSE
T ss_pred eeCCchhHHHHHHHHHHcCCCEEEEEecCCCcCcc-cccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCE
Confidence 334554 3466778899999999 64310 11112467778876 3455555666777766776666 4899
Q ss_pred EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc--ccCC----CCHH
Q 023494 191 VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA--VFGA----KDYA 264 (281)
Q Consensus 191 IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa--If~a----~dp~ 264 (281)
|.++. +.+ . ...+-++++|+ .|...-+.+-.+-..+.+..+.. .+|.+.+.|- =|.. +..-
T Consensus 91 itvH~-Ea~---~----~~~~~i~~i~~----~G~k~gval~p~t~~e~l~~~l~-~~D~Vl~msv~pGf~Gq~f~~~~l 157 (228)
T 3ovp_A 91 YTFHL-EAT---E----NPGALIKDIRE----NGMKVGLAIKPGTSVEYLAPWAN-QIDMALVMTVEPGFGGQKFMEDMM 157 (228)
T ss_dssp EEEEG-GGC---S----CHHHHHHHHHH----TTCEEEEEECTTSCGGGTGGGGG-GCSEEEEESSCTTTCSCCCCGGGH
T ss_pred EEEcc-CCc---h----hHHHHHHHHHH----cCCCEEEEEcCCCCHHHHHHHhc-cCCeEEEeeecCCCCCcccCHHHH
Confidence 98752 211 1 12222333333 23333344445555666666554 4787765442 1221 2223
Q ss_pred HHHHHHHHhc
Q 023494 265 EAIKGIKTSK 274 (281)
Q Consensus 265 ~~~~~l~~~~ 274 (281)
+.++++++..
T Consensus 158 ~ki~~lr~~~ 167 (228)
T 3ovp_A 158 PKVHWLRTQF 167 (228)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 4566666543
|
| >1tzz_A Hypothetical protein L1841; structural genomics, mandelate racemase like fold, nysgxrc target T1523, PSI, protein structure initiative; 1.86A {Bradyrhizobium japonicum} SCOP: c.1.11.2 d.54.1.1 PDB: 2dw7_A* 2dw6_A* | Back alignment and structure |
|---|
Probab=89.22 E-value=0.66 Score=43.24 Aligned_cols=115 Identities=9% Similarity=0.009 Sum_probs=76.3
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
+|+.+.+ .+.+.|.+.+=+|.-..+.....+.++++|+ . ++.+.+..|.....+...++++. +++|
T Consensus 165 ~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 241 (392)
T 1tzz_A 165 GLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDYPLFWY--- 241 (392)
T ss_dssp CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTSCCSEE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcCCCCCHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHcCCCee---
Confidence 5666644 4567899999998653112334567777777 3 46778888877777666555443 3333
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-----CcEEEEcc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-----ANALVAGS 255 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-----AD~~VvGS 255 (281)
.|++.+..++-.+++++. .+++|..|+.++ ++.+..+++.| +|++.+--
T Consensus 242 -------EqP~~~~d~~~~~~l~~~-----~~iPIa~dE~~~~~~~~~~~i~~~~~~~~~d~v~ik~ 296 (392)
T 1tzz_A 242 -------EEVGDPLDYALQAALAEF-----YPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDC 296 (392)
T ss_dssp -------ECCSCTTCHHHHHHHTTT-----CCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCT
T ss_pred -------cCCCChhhHHHHHHHHhh-----CCCCEEECCCCCCHHHHHHHHHcCCCccCCcEEEECc
Confidence 255555555555555432 358999999996 78889988887 89887653
|
| >1tkk_A Similar to chloromuconate cycloisomerase; epimerase, enolase super family,; 2.10A {Bacillus subtilis} SCOP: c.1.11.2 d.54.1.1 PDB: 1jpm_A | Back alignment and structure |
|---|
Probab=89.13 E-value=2.2 Score=39.10 Aligned_cols=125 Identities=14% Similarity=0.226 Sum_probs=78.4
Q ss_pred CeeEEEEecChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc---
Q 023494 117 PLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV--- 187 (281)
Q Consensus 117 ~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~--- 187 (281)
++...+-..+|+.+.+ .+.+.|.+.+=+|.-..+.....+.++++|+. ++.+.+..|.....+...++++.
T Consensus 131 ~~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~~~~~~d~~~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~~ 210 (366)
T 1tkk_A 131 ETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMED 210 (366)
T ss_dssp EBCEEECSCCHHHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHHHHHHHHHH
T ss_pred eeeEEecCCCHHHHHHHHHHHHHcCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 3333333457876654 34577999999986421123334667777763 56777888877777665555432
Q ss_pred --CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 188 --VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 188 --vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.+...+ .|++.+..++-++++++.. +++|..|+.++ .+.+..+++.| +|++.+-
T Consensus 211 ~~~~i~~i--------EqP~~~~d~~~~~~l~~~~-----~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 268 (366)
T 1tkk_A 211 AGLGIELV--------EQPVHKDDLAGLKKVTDAT-----DTPIMADESVFTPRQAFEVLQTRSADLINIK 268 (366)
T ss_dssp TTCCEEEE--------ECCSCTTCHHHHHHHHHHC-----SSCEEECTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred cCCCceEE--------ECCCCcccHHHHHHHHhhC-----CCCEEEcCCCCCHHHHHHHHHhCCCCEEEee
Confidence 222222 2556555666666666543 47899999986 67788777655 7888775
|
| >1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=89.12 E-value=1.6 Score=39.50 Aligned_cols=84 Identities=13% Similarity=0.094 Sum_probs=53.6
Q ss_pred ceEeEEEeccC-------ccCHHHHHHHHHHcCCCeEEEEeeeCcccccc---------cCCHHHHHHcCcCC-------
Q 023494 58 IIVSPSILSAN-------FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI---------TIGPLVVDALRPVT------- 114 (281)
Q Consensus 58 ~~i~pSila~D-------~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~---------~~G~~~I~~ir~~t------- 114 (281)
..+.+|+...+ ..++.+.++.+.+ |+|.+++.+- .|+. .+-.++++.+|+..
T Consensus 134 ~~~~v~i~~~~~~~i~~~~~~~~~aa~~~~~-g~d~iein~~----sP~~~g~~~~~~~~~~~~il~~vr~~~~~~~~~~ 208 (336)
T 1f76_A 134 GVLGINIGKNKDTPVEQGKDDYLICMEKIYA-YAGYIAINIS----SPNTPGLRTLQYGEALDDLLTAIKNKQNDLQAMH 208 (336)
T ss_dssp SEEEEEECCCTTSCGGGTHHHHHHHHHHHGG-GCSEEEEECC----CSSSTTGGGGGSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCCcccccHHHHHHHHHHHhc-cCCEEEEEcc----CCCCCCcccccCHHHHHHHHHHHHHHHHhhhhcc
Confidence 46888887655 4455566666655 7998877542 2331 12236778888765
Q ss_pred --CCCeeEEEEec----ChhhHHHHHHHcCCCEEEEcc
Q 023494 115 --DLPLDVHLMIV----EPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 115 --~~~idaHLmv~----dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.|+.+-+-.. |..++.+.+.++|+|+|++|.
T Consensus 209 g~~~Pv~vKi~~~~~~~~~~~~a~~l~~~Gvd~i~vsn 246 (336)
T 1f76_A 209 HKYVPIAVKIAPDLSEEELIQVADSLVRHNIDGVIATN 246 (336)
T ss_dssp TSCCCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEECC
T ss_pred cccCceEEEecCCCCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 68888743221 123346678899999999984
|
| >3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A | Back alignment and structure |
|---|
Probab=89.11 E-value=2.6 Score=37.02 Aligned_cols=132 Identities=8% Similarity=0.063 Sum_probs=73.1
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccccc---CCHHHHHHcCcCCCC-CeeEEEEe------cC-
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNIT---IGPLVVDALRPVTDL-PLDVHLMI------VE- 126 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~---~G~~~I~~ir~~t~~-~idaHLmv------~d- 126 (281)
++|..+........+++.++.+.+.|.+.+++-...-.+..... ...+.+++.-+..++ .+.+|.-. .|
T Consensus 6 mklG~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~h~~~~~nl~s~d~ 85 (303)
T 3aal_A 6 LKIGSHVSMSGKKMLLAASEEAASYGANTFMIYTGAPQNTKRKSIEELNIEAGRQHMQAHGIEEIVVHAPYIINIGNTTN 85 (303)
T ss_dssp CCEEEECCCCTTTTHHHHHHHHHHTTCSEEEEESSCTTCCCCCCSGGGCHHHHHHHHHHTTCCEEEEECCTTCCTTCSSC
T ss_pred eeeceeeecCCCccHHHHHHHHHHcCCCEEEEcCCCCCccCCCCCCHHHHHHHHHHHHHcCCceEEEeccccccCCCCCc
Confidence 45777766654447999999999999999988211111111111 223333333222455 56666421 13
Q ss_pred hh----------hHHHHHHHcCCCEEEEcccccc----cccHHHHHHHHHH-----cCCcEEEEECCC------CCHHHH
Q 023494 127 PE----------QRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKD-----LGAKAGVVLNPA------TSLSAI 181 (281)
Q Consensus 127 p~----------~~i~~~~~aGAd~Itvh~Ea~~----~~~i~~~l~~ik~-----~G~k~Glai~p~------t~ie~~ 181 (281)
|. +.++.+.+.|+..+.+|.-... .+....+++.+++ .|+++++--.+. +..+.+
T Consensus 86 ~~~r~~~~~~~~~~i~~A~~lGa~~vv~h~g~~~~~~~~~~~~~~~~~l~~l~~~a~gv~l~lEn~~~~~~~~~~t~~~~ 165 (303)
T 3aal_A 86 LDTFSLGVDFLRAEIERTEAIGAKQLVLHPGAHVGAGVEAGLRQIIRGLNEVLTREQNVQIALETMAGKGSECGRTFEEL 165 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSEEEECCEECTTSCHHHHHHHHHHHHHHHCCSSCSCEEEEECCCCCTTEECSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECCCcCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEecCCCCCCccCCCHHHH
Confidence 42 1345567789999999854210 1223444555554 366666654431 255667
Q ss_pred HHhhccCC
Q 023494 182 ECVLDVVD 189 (281)
Q Consensus 182 ~~~l~~vD 189 (281)
..+++.++
T Consensus 166 ~~li~~v~ 173 (303)
T 3aal_A 166 AYIIDGVA 173 (303)
T ss_dssp HHHHHHCT
T ss_pred HHHHHhcC
Confidence 77777654
|
| >3rpd_A Methionine synthase (B12-independent); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, rossmann fold, Zn, TRA; HET: MSE; 1.50A {Shewanella SP} | Back alignment and structure |
|---|
Probab=89.03 E-value=0.86 Score=42.36 Aligned_cols=89 Identities=30% Similarity=0.426 Sum_probs=51.3
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH-----HHHcCcC-CCC--CeeEEEEec-----C------------
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV-----VDALRPV-TDL--PLDVHLMIV-----E------------ 126 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~-----I~~ir~~-t~~--~idaHLmv~-----d------------ 126 (281)
+.++++.+.++|+++|++|- |.++..++. ++.++.. .+. ...+|+--- |
T Consensus 173 ~~~ei~~l~~aG~~~IQiDe------P~l~~~~~~~~~~~v~~~n~~~~~~~~~~~iHiC~G~~~~~n~d~~~t~~~~~g 246 (357)
T 3rpd_A 173 LNEEAKELEAAGVDIIQFDE------PAFNVFFDEVNDWGIACLERAIEGLKCETAVHICYGYGIKANTDWKKTLGSEWR 246 (357)
T ss_dssp HHHHHHHHHHTTCSEEEEEC------GGGGTCHHHHHHTHHHHHHHHHTTCCSEEEEEECSCCSSHHHHHHHTTSCSCCC
T ss_pred HHHHHHHHHHcCCCEEEecC------ccccccHHHHHHHHHHHHHHHHhCCCCceEEEEecCCccCCccccccccccccC
Confidence 34667788899999999993 444444432 3444432 233 344475522 1
Q ss_pred -hhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE
Q 023494 127 -PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 170 (281)
Q Consensus 127 -p~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl 170 (281)
-...++.+.+.++|.+++-.... ... .+.++.++ |..+++
T Consensus 247 ~y~~i~~~l~~~~~D~i~lE~~~~-r~~-~e~l~~~~--~k~v~l 287 (357)
T 3rpd_A 247 QYEEVFPKLQKSNIDIISLECHNS-HVP-MELLELIR--GKKVMV 287 (357)
T ss_dssp GGGGTHHHHHHSSCCEEEECCTTC-CCC-GGGGGGGT--TSEEEE
T ss_pred cHHHHHHHHHhCCCCEEEEEecCC-CCC-hHHHHhcC--CCEEEe
Confidence 12346778889999999886542 111 23445443 455655
|
| >3dg3_A Muconate cycloisomerase; muconate lactonizing enzyme, muconolactone binding; 1.60A {Mycobacterium smegmatis} PDB: 3dg6_A* 3dg7_A* | Back alignment and structure |
|---|
Probab=88.95 E-value=2.6 Score=38.83 Aligned_cols=124 Identities=13% Similarity=0.072 Sum_probs=81.1
Q ss_pred CCeeEEEEecChhhHHHH---HHHc-CCCEEEEcccccccccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhcc-
Q 023494 116 LPLDVHLMIVEPEQRVPD---FIKA-GADIVSVHCEQSSTIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~~---~~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~- 187 (281)
+++...+-..+|+..++. +.+. |...+=+..-..+...-.+.++++|+ .+..+.+..|.....+....+++.
T Consensus 129 v~~~~~~~~~~~~~~~~~a~~~~~~~G~~~~K~K~g~~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~~~~a~~~~~~l 208 (367)
T 3dg3_A 129 MRVSHMLGFDDPVKMVAEAERIRETYGINTFKVKVGRRPVQLDTAVVRALRERFGDAIELYVDGNRGWSAAESLRAMREM 208 (367)
T ss_dssp EEEEEEEESSCHHHHHHHHHHHHHHHCCCEEEEECCCSSTHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHT
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHhcCccEEEEeeCCChhhhHHHHHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 445555556788876554 4556 99999888632112122356677776 356788888888888766655543
Q ss_pred ----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 188 ----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 188 ----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
+++| .|++.+..++-.+++++.. +++|..|+.+. .+.+..+++.| +|++.+=
T Consensus 209 ~~~~i~~i----------EqP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~k 266 (367)
T 3dg3_A 209 ADLDLLFA----------EELCPADDVLSRRRLVGQL-----DMPFIADESVPTPADVTREVLGGSATAISIK 266 (367)
T ss_dssp TTSCCSCE----------ESCSCTTSHHHHHHHHHHC-----SSCEEECTTCSSHHHHHHHHHHTSCSEEEEC
T ss_pred HHhCCCEE----------ECCCCcccHHHHHHHHHhC-----CCCEEecCCcCCHHHHHHHHHcCCCCEEEee
Confidence 2333 3666665566666666543 47999999987 77888887776 7888764
|
| >2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A | Back alignment and structure |
|---|
Probab=88.86 E-value=11 Score=34.93 Aligned_cols=181 Identities=10% Similarity=0.091 Sum_probs=106.0
Q ss_pred ceEeEEEec---cCccCHHHHHHHHHHcCCCeEEEEeeeCc--cccc---c----------------cCCHHHHHHcCcC
Q 023494 58 IIVSPSILS---ANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPN---I----------------TIGPLVVDALRPV 113 (281)
Q Consensus 58 ~~i~pSila---~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn---~----------------~~G~~~I~~ir~~ 113 (281)
..|.+-+-+ .|.....+.++.+.++|+|.+-.-.-.-. +.|. + .++.+..+.|+++
T Consensus 20 ~~iIAe~g~NH~gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~ 99 (349)
T 2wqp_A 20 PLIICEIGINHEGSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEY 99 (349)
T ss_dssp CEEEEEEETTTTTCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHH
T ss_pred eEEEEecCCcccCCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHH
Confidence 444444432 35555556667778899999877321110 0111 1 4677777777664
Q ss_pred ---CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH---hhcc
Q 023494 114 ---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC---VLDV 187 (281)
Q Consensus 114 ---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~---~l~~ 187 (281)
.++++.. =+.|+. -++.+.+.|+|.+=+..-. ..+ ..+|+++-+.|+.+-+..... .++++.. ++..
T Consensus 100 ~~~~Gi~~~s--t~~d~~-svd~l~~~~v~~~KI~S~~--~~n-~~LL~~va~~gkPviLstGma-t~~Ei~~Ave~i~~ 172 (349)
T 2wqp_A 100 VESKGMIFIS--TLFSRA-AALRLQRMDIPAYKIGSGE--CNN-YPLIKLVASFGKPIILSTGMN-SIESIKKSVEIIRE 172 (349)
T ss_dssp HHHTTCEEEE--EECSHH-HHHHHHHHTCSCEEECGGG--TTC-HHHHHHHHTTCSCEEEECTTC-CHHHHHHHHHHHHH
T ss_pred HHHhCCeEEE--eeCCHH-HHHHHHhcCCCEEEECccc--ccC-HHHHHHHHhcCCeEEEECCCC-CHHHHHHHHHHHHH
Confidence 5555555 334543 4666778899999998764 233 468888888999999988887 4443333 3321
Q ss_pred --CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE-ecCCChhcHHHHHHcCCcEE
Q 023494 188 --VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV-DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 188 --vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V-DGGI~~e~i~~~~~aGAD~~ 251 (281)
.+++++.++ -++-- +...--|..|..+++..+ +++|.. |=..+.......+.+|||++
T Consensus 173 ~G~~iiLlhc~-s~Yp~-~~~~~nL~ai~~lk~~f~----~lpVg~sdHt~G~~~~~AAvAlGA~iI 233 (349)
T 2wqp_A 173 AGVPYALLHCT-NIYPT-PYEDVRLGGMNDLSEAFP----DAIIGLSDHTLDNYACLGAVALGGSIL 233 (349)
T ss_dssp HTCCEEEEECC-CCSSC-CGGGCCTHHHHHHHHHCT----TSEEEEECCSSSSHHHHHHHHHTCCEE
T ss_pred cCCCEEEEecc-CCCCC-ChhhcCHHHHHHHHHHCC----CCCEEeCCCCCcHHHHHHHHHhCCCEE
Confidence 377776544 12211 233334666777777642 356532 22233455566789999944
|
| >3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A | Back alignment and structure |
|---|
Probab=88.81 E-value=0.86 Score=39.06 Aligned_cols=208 Identities=14% Similarity=0.058 Sum_probs=112.1
Q ss_pred CceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEE---e--cChh--
Q 023494 57 DIIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM---I--VEPE-- 128 (281)
Q Consensus 57 ~~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLm---v--~dp~-- 128 (281)
..+|+-+.++. .-..+++.++.+.+.|.+.+++..-+ ......+.++++-+..++.+.++-. . .||.
T Consensus 4 ~~~lg~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~-----~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~d~~~r 78 (275)
T 3qc0_A 4 VEGLSINLATIREQCGFAEAVDICLKHGITAIAPWRDQ-----VAAIGLGEAGRIVRANGLKLTGLCRGGFFPAPDASGR 78 (275)
T ss_dssp CTTEEEEGGGGTTTCCHHHHHHHHHHTTCCEEECBHHH-----HHHHCHHHHHHHHHHHTCEESCEEEEECCCCSSHHHH
T ss_pred cccceeeeeeccCCCCHHHHHHHHHHcCCCEEEecccc-----ccccCHHHHHHHHHHcCCceEEeecCCCcCCCCHHHH
Confidence 45688888888 66799999999999999998874211 0122333333332224554443321 1 2432
Q ss_pred --------hHHHHHHHcCCCEEEEcccccc-------------cccHHHHHHHHHHcCCcEEEEE-CC--------CCCH
Q 023494 129 --------QRVPDFIKAGADIVSVHCEQSS-------------TIHLHRTLNQIKDLGAKAGVVL-NP--------ATSL 178 (281)
Q Consensus 129 --------~~i~~~~~aGAd~Itvh~Ea~~-------------~~~i~~~l~~ik~~G~k~Glai-~p--------~t~i 178 (281)
+.++.+.+.|++.|.+|.-..+ .+.+.++.+.++++|+++++-- ++ -...
T Consensus 79 ~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~~ 158 (275)
T 3qc0_A 79 EKAIDDNRRAVDEAAELGADCLVLVAGGLPGGSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPLHPMYAADRACVNTL 158 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCEEEECBCCCTTCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCGGGTTTTBSCCCH
T ss_pred HHHHHHHHHHHHHHHHhCCCEEEEeeCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeECCCcccCCccccCCH
Confidence 2455667889999999852111 1235666777788999988863 32 1245
Q ss_pred HHHHHhhccCC-EEEEEeecCCCCCCccchhHHHHHHHHHH--Hhhh---cCC----------CCeEEEecCCChh-cHH
Q 023494 179 SAIECVLDVVD-LVLIMSVNPGFGGQSFIESQVKKISDLRR--MCLE---KGV----------NPWIEVDGGVGPK-NAY 241 (281)
Q Consensus 179 e~~~~~l~~vD-~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~--l~~~---~~~----------~~~I~VDGGI~~e-~i~ 241 (281)
+.+..+++.++ .+-+ +.++|-.-. .....+-|+++.. .+.. +.. ...+ =+|-|+.. -+.
T Consensus 159 ~~~~~l~~~~~~~vg~-~~D~~h~~~--~~d~~~~l~~~~~~~~i~~vH~~D~~~~~~~~~~~r~~~-G~G~id~~~~~~ 234 (275)
T 3qc0_A 159 GQALDICETLGPGVGV-AIDVYHVWW--DPDLANQIARAGKMKAILAHHICDWLVPTKDMLTDRGMM-GDGVIDLKGIRR 234 (275)
T ss_dssp HHHHHHHHHHCTTEEE-EEEHHHHTT--CTTHHHHHHHHHHTTCEEEEEECBCCSSCCCSSSBCBCT-TSSCCCHHHHHH
T ss_pred HHHHHHHHHhCcccEE-EEEhhhhee--CCCHHHHHHHcCccceEEEEEecCCCCCcccccCCCcCC-CCCccCHHHHHH
Confidence 56666777665 2322 233331100 1123344444431 2210 000 0011 14666744 456
Q ss_pred HHHHcCCcEEEEcccccCC-----CCHHHHHHHHHHhc
Q 023494 242 KVIEAGANALVAGSAVFGA-----KDYAEAIKGIKTSK 274 (281)
Q Consensus 242 ~~~~aGAD~~VvGSaIf~a-----~dp~~~~~~l~~~~ 274 (281)
.+.+.|.+..++= -++.. .||.+.+++-.+.+
T Consensus 235 ~L~~~gy~g~~~~-E~~~~~~~~~~~~~~~~~~~~~~l 271 (275)
T 3qc0_A 235 RIEAAGFHGAQEV-EIFSADNWWKRPADEVIATCVERY 271 (275)
T ss_dssp HHHHTTCCCCEEE-CCCBTTTGGGSCHHHHHHHHHHHH
T ss_pred HHHHcCCCceEEE-EecCccccccCCHHHHHHHHHHHh
Confidence 7778898864422 23333 57887777655544
|
| >2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=88.81 E-value=12 Score=33.19 Aligned_cols=172 Identities=15% Similarity=0.077 Sum_probs=97.0
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 17 ~iD~~~l~~lv~~li~~Gv~gl~~---~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~ 93 (292)
T 2vc6_A 17 RIDEVALHDLVEWQIEEGSFGLVP---CGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQN 93 (292)
T ss_dssp EECHHHHHHHHHHHHHTTCSEEET---TSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHH
Confidence 367788889999999999987532 232222223333 334444432 2478888887777654 4455678
Q ss_pred cCCCEEEEcccc---cccccHHHHHHHHHH-cCCcEEEEECC-----CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc
Q 023494 137 AGADIVSVHCEQ---SSTIHLHRTLNQIKD-LGAKAGVVLNP-----ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 137 aGAd~Itvh~Ea---~~~~~i~~~l~~ik~-~G~k~Glai~p-----~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+|||.+.+..-. .+.+.+.+..+.+-+ .++.+.+=-+| +-+.+.+.++.+ ...++.+= +. .|
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK--~s--~g---- 165 (292)
T 2vc6_A 94 AGADGVLIVSPYYNKPTQEGIYQHFKAIDAASTIPIIVYNIPGRSAIEIHVETLARIFEDCPNVKGVX--DA--TG---- 165 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEE--EC--SC----
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHhhCCCEEEEe--cC--CC----
Confidence 899988775321 112233344434333 46666554333 235566777765 44444321 11 11
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++..+ .++.+ ..| +-+.+......|++.+|.|.+
T Consensus 166 --d~~~~~~~~~~~~---~~f~v-~~G--~d~~~~~~l~~G~~G~is~~~ 207 (292)
T 2vc6_A 166 --NLLRPSLERMACG---EDFNL-LTG--EDGTALGYMAHGGHGCISVTA 207 (292)
T ss_dssp --CTHHHHHHHHHSC---TTSEE-EES--CGGGHHHHHHTTCCEEEESGG
T ss_pred --CHHHHHHHHHHcC---CCEEE-EEC--chHHHHHHHHcCCCEEEecHH
Confidence 1345555554432 24554 344 344566778999999999955
|
| >2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8} | Back alignment and structure |
|---|
Probab=88.74 E-value=12 Score=33.11 Aligned_cols=130 Identities=13% Similarity=0.178 Sum_probs=75.3
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccc------ccccCCHHHHHHcCcCCCCCeeEEEEecChh----hHHHHHHHc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFV------PNITIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIKA 137 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fv------pn~~~G~~~I~~ir~~t~~~idaHLmv~dp~----~~i~~~~~a 137 (281)
++.++.++++.+.+.|++.+. +.++++. |+...=.++++.+++.++.. .+.+...+|. +.++.+.++
T Consensus 34 ~~e~i~~ei~~l~~~G~~ei~--l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~~gi~-~ir~~~~~p~~l~~e~l~~l~~~ 110 (304)
T 2qgq_A 34 SIEDITREVEDLLKEGKKEII--LVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEF-WIRVMYLHPDHLTEEIISAMLEL 110 (304)
T ss_dssp CHHHHHHHHHHHHHTTCCEEE--EECTTGGGTTHHHHSSCCHHHHHHHHHTSSSSC-EEEECCCCGGGCCHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHCCCcEEE--EEeEcccccCCCCCcHHHHHHHHHHHHhcCCCc-EEEEeeeecccCCHHHHHHHHhC
Confidence 445677778888778887653 3443221 11111245566666654432 3455556775 467888899
Q ss_pred C--CCEEEEcccccc------------cccHHHHHHHHHH--cCCcEEEEE--C-CCCCHHHHHHhhcc-----CCEEEE
Q 023494 138 G--ADIVSVHCEQSS------------TIHLHRTLNQIKD--LGAKAGVVL--N-PATSLSAIECVLDV-----VDLVLI 193 (281)
Q Consensus 138 G--Ad~Itvh~Ea~~------------~~~i~~~l~~ik~--~G~k~Glai--~-p~t~ie~~~~~l~~-----vD~Ilv 193 (281)
| ++.+++..++.+ .++..+.++.+++ .|+.+...+ . |+...+.+++.++. +|.+.+
T Consensus 111 g~~~~~l~i~lqs~s~~vl~~m~r~~t~e~~~~~i~~l~~~~~gi~i~~~~IvG~PgEt~ed~~~t~~~l~~l~~~~v~~ 190 (304)
T 2qgq_A 111 DKVVKYFDVPVQHGSDKILKLMGRTKSSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLGA 190 (304)
T ss_dssp TTBCCEEECCCBCSCHHHHHHTTCCSCHHHHHHHHHHHHHHCTTCEEEEEEEECCTTCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred CCCccEEEEecccCCHHHHHHhCCCCCHHHHHHHHHHHHhhCCCCEEEEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9 899999887641 1235567778888 687776543 2 55555555554432 577666
Q ss_pred Eee--cCCC
Q 023494 194 MSV--NPGF 200 (281)
Q Consensus 194 msV--~pG~ 200 (281)
... .||.
T Consensus 191 ~~~~p~pgT 199 (304)
T 2qgq_A 191 FVYSDEEGT 199 (304)
T ss_dssp EECCC----
T ss_pred EEeeCCCCC
Confidence 543 5565
|
| >3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp} | Back alignment and structure |
|---|
Probab=88.63 E-value=1.5 Score=38.72 Aligned_cols=144 Identities=15% Similarity=0.182 Sum_probs=81.2
Q ss_pred eeEEEEecChh---hHHHHHHHcCCCEEEEccccc---cccc-HHHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhc-c
Q 023494 118 LDVHLMIVEPE---QRVPDFIKAGADIVSVHCEQS---STIH-LHRTLNQIKDLG--AKAGVVLNPATSLSAIECVLD-V 187 (281)
Q Consensus 118 idaHLmv~dp~---~~i~~~~~aGAd~Itvh~Ea~---~~~~-i~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~-~ 187 (281)
+---++..|.. +.++.+.++|+|++++=.-.. +.-+ =..+++.+|+.. +..-+-+...+|...++.+.+ .
T Consensus 30 i~pSilsaD~~~L~~~i~~l~~~G~d~lHvDVmDg~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aG 109 (246)
T 3inp_A 30 INPSILSADLARLGDDVKAVLAAGADNIHFDVMDNHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAG 109 (246)
T ss_dssp EEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHT
T ss_pred eehhhhcCChhhHHHHHHHHHHcCCCEEEEEecCCCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcC
Confidence 34444555654 456777889999999832211 1111 125788888875 556666777788777777766 4
Q ss_pred CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc--ccCC----C
Q 023494 188 VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA--VFGA----K 261 (281)
Q Consensus 188 vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa--If~a----~ 261 (281)
+|+|.+.. +. .. ...+-++++| +.|...-+.+-.+-..+.+..+.+ ++|.+.+.|- =|+. +
T Consensus 110 Ad~itvH~-Ea---~~----~~~~~i~~ir----~~G~k~Gvalnp~Tp~e~l~~~l~-~vD~VlvMsV~PGfgGQ~fi~ 176 (246)
T 3inp_A 110 ATSIVFHP-EA---SE----HIDRSLQLIK----SFGIQAGLALNPATGIDCLKYVES-NIDRVLIMSVNPGFGGQKFIP 176 (246)
T ss_dssp CSEEEECG-GG---CS----CHHHHHHHHH----TTTSEEEEEECTTCCSGGGTTTGG-GCSEEEEECSCTTC--CCCCT
T ss_pred CCEEEEcc-cc---ch----hHHHHHHHHH----HcCCeEEEEecCCCCHHHHHHHHh-cCCEEEEeeecCCCCCcccch
Confidence 89997641 11 11 1122233332 334333455555555667777666 6898876542 2321 3
Q ss_pred CHHHHHHHHHHhc
Q 023494 262 DYAEAIKGIKTSK 274 (281)
Q Consensus 262 dp~~~~~~l~~~~ 274 (281)
+.-+.++++++.+
T Consensus 177 ~~l~KI~~lr~~~ 189 (246)
T 3inp_A 177 AMLDKAKEISKWI 189 (246)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4455666776654
|
| >2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=88.54 E-value=1.2 Score=40.00 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=60.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcCC-CCCeeEEEEec--ChhhHHHHHHHcCCCEE
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVT-DLPLDVHLMIV--EPEQRVPDFIKAGADIV 142 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~--dp~~~i~~~~~aGAd~I 142 (281)
|+..+.+.++.+.+.|+|.| -+.| |...|... .+.++.|++.. +.++.+|.==. -+..-...+.++|++.|
T Consensus 157 ~~~~~~~~~~~~~~~G~d~i--~l~DT~G~~~P~~~--~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~v 232 (302)
T 2ftp_A 157 DPRQVAWVARELQQMGCYEV--SLGDTIGVGTAGAT--RRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVF 232 (302)
T ss_dssp CHHHHHHHHHHHHHTTCSEE--EEEESSSCCCHHHH--HHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEE
T ss_pred CHHHHHHHHHHHHHcCCCEE--EEeCCCCCcCHHHH--HHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEE
Confidence 44455566666779999986 4456 54455432 35677888764 67888887332 22223445678999988
Q ss_pred EEcc----c------ccccccHHHHHHHHHHcCCcEEE
Q 023494 143 SVHC----E------QSSTIHLHRTLNQIKDLGAKAGV 170 (281)
Q Consensus 143 tvh~----E------a~~~~~i~~~l~~ik~~G~k~Gl 170 (281)
-.-. | .......++++..+++.|...|+
T Consensus 233 d~tv~GlG~cp~a~gr~GN~~~E~lv~~l~~~g~~~~i 270 (302)
T 2ftp_A 233 DSSVAGLGGCPYAKGATGNVASEDVLYLLNGLEIHTGV 270 (302)
T ss_dssp EEBGGGCCBCGGGTTCBCBCBHHHHHHHHHHTTCBCCC
T ss_pred EecccccCCCCCCCCCCCChhHHHHHHHHHhcCCCCCc
Confidence 7653 3 11234466677777777666544
|
| >2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7 | Back alignment and structure |
|---|
Probab=88.51 E-value=7.8 Score=36.80 Aligned_cols=195 Identities=13% Similarity=0.083 Sum_probs=111.9
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc------cccc-ccCCHHHHHHcCcCCCCC---eeEEEEecChh--
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR------FVPN-ITIGPLVVDALRPVTDLP---LDVHLMIVEPE-- 128 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~------fvpn-~~~G~~~I~~ir~~t~~~---idaHLmv~dp~-- 128 (281)
.+++-+.++..++-.++.+++.+...| +-+-.+. |..- ...-..+++.+-+..+.| +-+||==-.|.
T Consensus 16 v~afn~~n~e~i~Ail~aAee~~sPVI-i~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDHg~~~~w 94 (420)
T 2fiq_A 16 ICSVCSAHPLVIEAALAFDRNSTRKVL-IEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDHLGPNCW 94 (420)
T ss_dssp EEEECCCCHHHHHHHHHHTTTSCCCEE-EEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSGGG
T ss_pred EEEeccCCHHHHHHHHHHHHHcCCCEE-EEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCCCCCccc
Confidence 456666666677777777877777664 5444332 3310 000013344333334566 88888665554
Q ss_pred -------------hHHHHHHHcCCCEEEEcccc------cc-cccH-----HHHHHHHHHcCCc------EEEE------
Q 023494 129 -------------QRVPDFIKAGADIVSVHCEQ------SS-TIHL-----HRTLNQIKDLGAK------AGVV------ 171 (281)
Q Consensus 129 -------------~~i~~~~~aGAd~Itvh~Ea------~~-~~~i-----~~~l~~ik~~G~k------~Gla------ 171 (281)
..+..++++|.+.|.+=+-. .+ .+++ .++.+.+++. .. +|-.
T Consensus 95 ~~~~~~~am~~a~e~i~~aI~aGFtSVMiD~S~~~~~~~~pl~eNi~~~rt~elv~~Ah~~-~~~~~eaElG~vgG~Ev~ 173 (420)
T 2fiq_A 95 QQENVDAAMEKSVELVKAYVRAGFSKIHLDASMSCAGDPIPLAPETVAERAAVLCFAAESV-ATDCQREQLSYVIGTEVP 173 (420)
T ss_dssp TTSBHHHHHHHHHHHHHHHHHTTCCEEEECCCSCCBTCCSSCCHHHHHHHHHHHHHHHHHH-CCHHHHHHCEEEEECSSC
T ss_pred cccchhhhhhhHHHHHHHHHHhCCCEEEECCCCCCCCCCCCccHHHHHHHHHHHHHHHHHH-cccCCcccceEEeeeecC
Confidence 56888999998877765432 11 2233 4557777775 21 1111
Q ss_pred --------EC--CCCCHHHHHHhhc-------c--CCE----EEEEeecCCCC-CCc-cchhHHHHHHHHHHHhhhcCCC
Q 023494 172 --------LN--PATSLSAIECVLD-------V--VDL----VLIMSVNPGFG-GQS-FIESQVKKISDLRRMCLEKGVN 226 (281)
Q Consensus 172 --------i~--p~t~ie~~~~~l~-------~--vD~----IlvmsV~pG~~-GQ~-f~~~~l~kI~~lr~l~~~~~~~ 226 (281)
.. .-|..+..+++++ . +|. |.-+.|.+|.. |.. -..--+++++++++.++. ++
T Consensus 174 v~~~~~~~~~~~~~T~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~~~~ld~e~l~~I~~~v~~--P~ 251 (420)
T 2fiq_A 174 VPGGEASAIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQALAQWIEN--TR 251 (420)
T ss_dssp C----------CCCCCHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSCEECCCGGGGHHHHHHHTT--SS
T ss_pred CCCCcccccCCCCCCCHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCCCCCcCHHHHHHHHHhcCC--CC
Confidence 11 1377777777775 3 565 33345667752 211 112225566777777642 11
Q ss_pred CeEEEec--CCChhcHHHHHHcCCcEEEEcccccC
Q 023494 227 PWIEVDG--GVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 227 ~~I~VDG--GI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+-++-=| |++.+.++++++.|...+=+|+.+..
T Consensus 252 LVle~HGgSg~~~e~l~~~v~~Gi~kiNV~t~l~~ 286 (420)
T 2fiq_A 252 MVYEAHSTDYQTRTAYWELVRDHFAILKVGPALTF 286 (420)
T ss_dssp CEEEESCCTTCCHHHHHHHHHTTEEEEEECHHHHH
T ss_pred EEEecCCCCCCCHHHHHHHHHcCCCEEEECHHHHH
Confidence 2232234 57789999999999999999988764
|
| >2qde_A Mandelate racemase/muconate lactonizing enzyme FA protein; PSI-II, NYSGXRC, enolase, structural genomics, protei structure initiative, PSI-2; 1.93A {Azoarcus SP} | Back alignment and structure |
|---|
Probab=88.47 E-value=0.74 Score=42.94 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=75.3
Q ss_pred cChhhHHHH---HHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEEE
Q 023494 125 VEPEQRVPD---FIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVLI 193 (281)
Q Consensus 125 ~dp~~~i~~---~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilv 193 (281)
.+|+.+.+. +.+.|.+.+=+|.-. +.+...+.++++|+. ++.+.+..|.....+...++++. +++|
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~vKik~g~-~~~~~~e~v~avR~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 220 (397)
T 2qde_A 144 GEPEAVAEEALAVLREGFHFVKLKAGG-PLKADIAMVAEVRRAVGDDVDLFIDINGAWTYDQALTTIRALEKYNLSKI-- 220 (397)
T ss_dssp SCHHHHHHHHHHHHHHTCSCEEEECCS-CHHHHHHHHHHHHHHHCTTSCEEEECTTCCCHHHHHHHHHHHGGGCCSCE--
T ss_pred CCHHHHHHHHHHHHHhhhhheeecccC-CHHHHHHHHHHHHHhhCCCCEEEEECCCCCCHHHHHHHHHHHHhCCCCEE--
Confidence 577766543 467899999999643 223345677788775 46778888877777665555432 3433
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++-.+++++. .+++|..|+.+. ++.+..+++.| +|++.+-
T Consensus 221 --------EqP~~~~~~~~~~~l~~~-----~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 270 (397)
T 2qde_A 221 --------EQPLPAWDLDGMARLRGK-----VATPIYADESAQELHDLLAIINKGAADGLMIK 270 (397)
T ss_dssp --------ECCSCTTCHHHHHHHHTT-----CSSCEEESTTCCSHHHHHHHHHHTCCSEEEEC
T ss_pred --------ECCCChhhHHHHHHHHhh-----CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEe
Confidence 255555555555555543 357899999986 77888887765 7888763
|
| >3lot_A Uncharacterized protein; protein of unknown function, structural genomics, joint CENT structural genomics, JCSG; HET: MSE; 1.89A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=88.35 E-value=3.2 Score=37.96 Aligned_cols=195 Identities=15% Similarity=0.176 Sum_probs=109.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeee---CcccccccCCHHHHHHcCcCCCCCeeEEEEec-------ChhhHHHHHHHcCCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMD---GRFVPNITIGPLVVDALRPVTDLPLDVHLMIV-------EPEQRVPDFIKAGAD 140 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImD---G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~-------dp~~~i~~~~~aGAd 140 (281)
.+.++...+.++|+..+|+-+-| |.=......--++++.||+.++ +.+.+-+. +++.-+....+...|
T Consensus 33 Eia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~y~e~i~~IR~~~d--~iI~~TTgg~~~~~~~~eeR~~~~~~~~Pe 110 (314)
T 3lot_A 33 QIVEEAVKAAEAGAGMVHIHARDPKDGRPTTDVEVFRYICREIKKQSD--VVINVTTGGGGTLGIPVEERAKVVPALKPE 110 (314)
T ss_dssp HHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHHHHHHHHHHHCC--CEEEECSSTTGGGTCCHHHHTTHHHHHCCS
T ss_pred HHHHHHHHHHHcCCCEEEEeecCCCCCCcCCCHHHHHHHHHHHHhcCC--eEEEeCCCCcCCCCCCHHHHHHHHHhcCCc
Confidence 44555566778999999998876 5322223344568888888765 33434332 333333334456778
Q ss_pred EEEEccccc---------------------------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc
Q 023494 141 IVSVHCEQS---------------------------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV 187 (281)
Q Consensus 141 ~Itvh~Ea~---------------------------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~ 187 (281)
+.++-.-+. +...+.++++.++++|+++-+.+-....+..+..+++.
T Consensus 111 ~aSln~Gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~N~~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~ 190 (314)
T 3lot_A 111 IATFNMGSMNFAIHPLLKKYKEFKYDWEPEYLEMTRDIVFRNTFKDLEALSRIFKENDTKPELECYDIGQIYNTAFMFHE 190 (314)
T ss_dssp EEEEECCCEECBCTTHHHHCCCCSSTHHHHHHHHGGGCEECCCHHHHHHHHHHHHHHTCEEEEEECSHHHHHHHHHHHHT
T ss_pred eeeecCCCcccccccccccccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCEEEEEEECHHHHHHHHHHHHC
Confidence 887765110 13358888999999999999988643445555555543
Q ss_pred ------CCEEEEEeecCCCCCCccchhHHHHHHH-HHHHhhhcCCCCeEEEecCCChh---cHHHHHHcCCcEEEEc--c
Q 023494 188 ------VDLVLIMSVNPGFGGQSFIESQVKKISD-LRRMCLEKGVNPWIEVDGGVGPK---NAYKVIEAGANALVAG--S 255 (281)
Q Consensus 188 ------vD~IlvmsV~pG~~GQ~f~~~~l~kI~~-lr~l~~~~~~~~~I~VDGGI~~e---~i~~~~~aGAD~~VvG--S 255 (281)
..+-+||++. +|++-.|+.+.-..+ +.++.... +....| -|+... -....+..|-+ +=|| =
T Consensus 191 Gll~~p~~~~~VlGv~---~G~~~~p~~L~~~~~~~~~l~~~~--~~~Wsv-~g~Gr~q~p~~~~A~~~GGh-vRVGlED 263 (314)
T 3lot_A 191 GYLEPPLRLQFIHGIL---GGIGTAVEDVLFMKQTADRLIGRE--NYTWSL-VGAGRFQMPLGTLAVIMGGD-VRVGLED 263 (314)
T ss_dssp TCSCSSEEEEEEECCB---TSCCCCHHHHHHHHHHHHHHTCGG--GEEEEE-EECGGGHHHHHHHHHHTTCE-EEESTTT
T ss_pred CCCCCCceEEEEecCC---CCCCCCHHHHHHHHHHhhhccCCC--CCeEEE-EecChhhHHHHHHHHHcCCc-eEEccCc
Confidence 2233456552 356666666554432 22333211 233333 333333 34456888988 5667 2
Q ss_pred cccC-----CCCHHHHHHHHHHhc
Q 023494 256 AVFG-----AKDYAEAIKGIKTSK 274 (281)
Q Consensus 256 aIf~-----a~dp~~~~~~l~~~~ 274 (281)
.++- +++-.+.++++.+.+
T Consensus 264 nl~~~~G~lA~sNa~lV~~~~~i~ 287 (314)
T 3lot_A 264 SLYIERGKLAKSNAEQVEKMVRIV 287 (314)
T ss_dssp CSEEETTEECSCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCCHHHHHHHHHHHH
Confidence 2442 234455555555543
|
| >1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A* | Back alignment and structure |
|---|
Probab=88.29 E-value=4.7 Score=31.78 Aligned_cols=101 Identities=17% Similarity=0.201 Sum_probs=54.3
Q ss_pred HHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC-CCeEEEecCC
Q 023494 159 NQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV-NPWIEVDGGV 235 (281)
Q Consensus 159 ~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~-~~~I~VDGGI 235 (281)
..++.+|.++- .+.+..|.+.+.+.+. .+|.|.+-+.. +. ....++++.+.+.+.+. +++|.|.|..
T Consensus 25 ~~l~~~G~~Vi-~lG~~~p~e~~v~~a~~~~~d~v~lS~~~-~~--------~~~~~~~~i~~l~~~g~~~i~v~vGG~~ 94 (137)
T 1ccw_A 25 HAFTNAGFNVV-NIGVLSPQELFIKAAIETKADAILVSSLY-GQ--------GEIDCKGLRQKCDEAGLEGILLYVGGNI 94 (137)
T ss_dssp HHHHHTTCEEE-EEEEEECHHHHHHHHHHHTCSEEEEEECS-ST--------HHHHHTTHHHHHHHTTCTTCEEEEEESC
T ss_pred HHHHHCCCEEE-ECCCCCCHHHHHHHHHhcCCCEEEEEecC-cC--------cHHHHHHHHHHHHhcCCCCCEEEEECCC
Confidence 44566777654 2222346655554433 47888764433 11 11222222333333333 5778777653
Q ss_pred --ChhcH----HHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 236 --GPKNA----YKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 236 --~~e~i----~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
..+.. ..+.++|+|.+.- ...++.+.++.+++.+
T Consensus 95 ~~~~~~~~~~~~~~~~~G~d~~~~-----~g~~~~~~~~~l~~~~ 134 (137)
T 1ccw_A 95 VVGKQHWPDVEKRFKDMGYDRVYA-----PGTPPEVGIADLKKDL 134 (137)
T ss_dssp SSSSCCHHHHHHHHHHTTCSEECC-----TTCCHHHHHHHHHHHH
T ss_pred cCchHhhhhhHHHHHHCCCCEEEC-----CCCCHHHHHHHHHHHh
Confidence 34444 3489999996642 2357778888887654
|
| >2rdx_A Mandelate racemase/muconate lactonizing enzyme, P; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.00A {Roseovarius nubinhibens} | Back alignment and structure |
|---|
Probab=88.23 E-value=1.7 Score=40.17 Aligned_cols=117 Identities=12% Similarity=0.070 Sum_probs=76.3
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc-C--CcEEEEECCCCCHHHHHHhhcc---CCEEEEEe
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-G--AKAGVVLNPATSLSAIECVLDV---VDLVLIMS 195 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G--~k~Glai~p~t~ie~~~~~l~~---vD~Ilvms 195 (281)
.+|+.+.+ .+.++|.+.+=+|.-. +.....+.++++|+. | +.+.+..|.....+...++++. .+. .+
T Consensus 144 ~~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~d~~l~vDan~~~~~~~a~~~~~~l~~~~i-~i-- 219 (379)
T 2rdx_A 144 RSEAETRAELARHRAAGYRQFQIKVGA-DWQSDIDRIRACLPLLEPGEKAMADANQGWRVDNAIRLARATRDLDY-IL-- 219 (379)
T ss_dssp SCSHHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHGGGSCTTCEEEEECTTCSCHHHHHHHHHHTTTSCC-EE--
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEeccC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhCCe-EE--
Confidence 57776654 4567899999999753 133345777888764 4 6778888877777766565543 333 22
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEccccc
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVF 258 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf 258 (281)
+ |++. .++-.+++++. .+++|..|+.++ ++.+.++++.| +|++.+.-.-.
T Consensus 220 -E-----~P~~--~~~~~~~l~~~-----~~iPI~~de~i~~~~~~~~~i~~~~~d~v~ik~~~~ 271 (379)
T 2rdx_A 220 -E-----QPCR--SYEECQQVRRV-----ADQPMKLDECVTGLHMAQRIVADRGAEICCLKISNL 271 (379)
T ss_dssp -E-----CCSS--SHHHHHHHHTT-----CCSCEEECTTCCSHHHHHHHHHHTCCSEEEEETTTT
T ss_pred -e-----CCcC--CHHHHHHHHhh-----CCCCEEEeCCcCCHHHHHHHHHcCCCCEEEEecccc
Confidence 2 3332 34444444432 358999999996 77888887766 89998865443
|
| >1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=88.23 E-value=3 Score=36.20 Aligned_cols=141 Identities=9% Similarity=0.119 Sum_probs=78.8
Q ss_pred EecChh---hHHHHHHHcCCCEEEEccccc---ccccH-HHHHHHHHHcC--CcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 123 MIVEPE---QRVPDFIKAGADIVSVHCEQS---STIHL-HRTLNQIKDLG--AKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 123 mv~dp~---~~i~~~~~aGAd~Itvh~Ea~---~~~~i-~~~l~~ik~~G--~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
+..|.. +.++.+.++|+|++++=.-.. +..+. ...++.+|+.- ....+-+.-..|...++.+.+ +|++.+
T Consensus 13 la~D~~~l~~~i~~~~~~g~d~iHvDvmDg~fvpn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~-Ad~itv 91 (227)
T 1tqx_A 13 LASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT-SNQLTF 91 (227)
T ss_dssp GGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT-SSEEEE
T ss_pred hcCChhhHHHHHHHHHHcCCCEEEEEEEeCCcCcchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh-CCEEEE
Confidence 444543 346667788999987764321 11121 36888888873 666666666667766666666 999866
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec--CCChhcHHHHHHcC-CcEEEEccc--cc-CC---CCHH
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG--GVGPKNAYKVIEAG-ANALVAGSA--VF-GA---KDYA 264 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG--GI~~e~i~~~~~aG-AD~~VvGSa--If-~a---~dp~ 264 (281)
+ .+... ..+.+.-++...+.+.| .++.|+= +-..+.+..+.+.| +|.+.++|- =| +. +..-
T Consensus 92 H---~ea~~-----~~~~~~i~~~~~i~~~G--~k~gvalnp~tp~~~~~~~l~~g~~D~VlvmsV~pGf~gq~f~~~~l 161 (227)
T 1tqx_A 92 H---FEALN-----EDTERCIQLAKEIRDNN--LWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMM 161 (227)
T ss_dssp E---GGGGT-----TCHHHHHHHHHHHHTTT--CEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGH
T ss_pred e---ecCCc-----cCHHHHHHHHHHHHHcC--CeEEEEeCCCCcHHHHHHHhhcCCcCEEEEeeeccCCCCcccchHHH
Confidence 4 32211 01222211111333333 4555543 33356788888876 999987763 12 22 2334
Q ss_pred HHHHHHHHhc
Q 023494 265 EAIKGIKTSK 274 (281)
Q Consensus 265 ~~~~~l~~~~ 274 (281)
+.++++++..
T Consensus 162 ~ki~~lr~~~ 171 (227)
T 1tqx_A 162 GKVSFLRKKY 171 (227)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 5566666654
|
| >3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0 | Back alignment and structure |
|---|
Probab=88.21 E-value=4.3 Score=35.82 Aligned_cols=75 Identities=20% Similarity=0.323 Sum_probs=53.2
Q ss_pred CeeEEEEe-cChhhHHHHHHHcCCCEEEEcccccc--cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEE
Q 023494 117 PLDVHLMI-VEPEQRVPDFIKAGADIVSVHCEQSS--TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVL 192 (281)
Q Consensus 117 ~idaHLmv-~dp~~~i~~~~~aGAd~Itvh~Ea~~--~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Il 192 (281)
.+-..+.+ .+|. .++++..+|+|+|.+=.|... .+.+...++.++..|..+.|=+|+.++ ..++..++ .+|.|+
T Consensus 16 ~~g~~~~~~~~p~-~~e~a~~~g~D~vilDlEhav~~~~k~~~~l~a~~~~~~~~~VRVn~~~~-~di~~~ld~G~~gI~ 93 (261)
T 3qz6_A 16 VVGTMLNLVYNPD-IVRIYAEAGLDYFIVDCEHAAYTFREINHLVSVAKNAGVSVLVRIPQVDR-AHVQRLLDIGAEGFM 93 (261)
T ss_dssp EEEEEESSCCCTT-HHHHHHHTTCSEEEEESSSSCCCHHHHHHHHHHHHHHTCEEEEECSSCCH-HHHHHHHHHTCCEEE
T ss_pred EEEEEEecCCCHH-HHHHHhcCCcCEEEEeccCCCCCHHHHHHHHHHHhhcCCeEEEEeCCCCH-HHHHHHHhcCCCEEE
Confidence 45666667 7776 678888999999999999741 223455566666678888888887766 45666665 478776
Q ss_pred E
Q 023494 193 I 193 (281)
Q Consensus 193 v 193 (281)
+
T Consensus 94 l 94 (261)
T 3qz6_A 94 I 94 (261)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=88.17 E-value=1.7 Score=39.77 Aligned_cols=93 Identities=17% Similarity=0.151 Sum_probs=50.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCC------HHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIG------PLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G------~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
...+..+.+.+.|+|+|-|.-. ..=|. ++.. ..+|+.|++.. +.++-+ =+.+|+ .++.+.++||++
T Consensus 66 ~a~~~A~~~v~~GAdIIDIGge--STrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISI--DT~~~~-VaeaAl~aGa~i 140 (318)
T 2vp8_A 66 AARDAVHRAVADGADVIDVGGV--KAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISV--DTWRAQ-VAKAACAAGADL 140 (318)
T ss_dssp HHHHHHHHHHHTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHSTTCEEEE--ECSCHH-HHHHHHHHTCCE
T ss_pred HHHHHHHHHHHCCCCEEEECCC--cCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEE--eCCCHH-HHHHHHHhCCCE
Confidence 3344455667789998644211 11122 1111 22356666543 556544 445655 677888899998
Q ss_pred EE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 142 VS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 142 It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
|- +..+. ..+.+..++++|+.+.+.-+
T Consensus 141 INDVsg~~-----d~~m~~vaa~~g~~vVlmh~ 168 (318)
T 2vp8_A 141 INDTWGGV-----DPAMPEVAAEFGAGLVCAHT 168 (318)
T ss_dssp EEETTSSS-----STTHHHHHHHHTCEEEEECC
T ss_pred EEECCCCC-----chHHHHHHHHhCCCEEEECC
Confidence 74 33331 22567778889987777654
|
| >2ps2_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9440A, enolase superfamily, PSI-2; 1.80A {Aspergillus oryzae RIB40} | Back alignment and structure |
|---|
Probab=88.06 E-value=2 Score=39.52 Aligned_cols=122 Identities=17% Similarity=0.125 Sum_probs=77.5
Q ss_pred CCeeEEEEecChhhHHHH---HHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccC-
Q 023494 116 LPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVV- 188 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~v- 188 (281)
.|....+-..+|+.+.+. +.+.|.+.+=+|.-. +.....+.++++|+. ++.+.+..|.....+...++++..
T Consensus 136 vp~~~~~~~~~~~~~~~~a~~~~~~Gf~~iKik~g~-~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~ 214 (371)
T 2ps2_A 136 LPLISSIYVGEPEDMRARVAKYRAKGYKGQSVKISG-EPVTDAKRITAALANQQPDEFFIVDANGKLSVETALRLLRLLP 214 (371)
T ss_dssp EEBEEEECSCCHHHHHHHHHHHHTTTCCEEEEECCS-CHHHHHHHHHHHTTTCCTTCEEEEECTTBCCHHHHHHHHHHSC
T ss_pred eEEEEEeCCCCHHHHHHHHHHHHHhChheEEeecCC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCcCHHHHHHHHHHHH
Confidence 455555545688776543 467899999999753 233345677788773 466777788777776665554433
Q ss_pred ---CEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 189 ---DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 189 ---D~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
+. .+ + |++. .++-.+++++. .+++|..|+.++ ++.+.++++.| +|++.+-
T Consensus 215 ~~~~i-~i---E-----~P~~--~~~~~~~l~~~-----~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (371)
T 2ps2_A 215 HGLDF-AL---E-----APCA--TWRECISLRRK-----TDIPIIYDELATNEMSIVKILADDAAEGIDLK 269 (371)
T ss_dssp TTCCC-EE---E-----CCBS--SHHHHHHHHTT-----CCSCEEESTTCCSHHHHHHHHHHTCCSEEEEE
T ss_pred hhcCC-cC---c-----CCcC--CHHHHHHHHhh-----CCCCEEeCCCcCCHHHHHHHHHhCCCCEEEec
Confidence 32 22 2 3332 23444444432 358999999986 77888887776 7988774
|
| >3dip_A Enolase; structural genomics, isomerase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics, NYSGXRC, lyase; HET: SIC; 2.50A {Unidentified} | Back alignment and structure |
|---|
Probab=87.88 E-value=3.9 Score=38.36 Aligned_cols=117 Identities=11% Similarity=0.059 Sum_probs=75.9
Q ss_pred cChhhHHHHHHHcCCCEEEEccc------c----c--ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc--
Q 023494 125 VEPEQRVPDFIKAGADIVSVHCE------Q----S--STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-- 187 (281)
Q Consensus 125 ~dp~~~i~~~~~aGAd~Itvh~E------a----~--~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-- 187 (281)
.+|.+.++.+.+.|...+=++.- . . ..+...+.++++|+. ++.+.+..|.....+....+++.
T Consensus 158 ~~~~~~a~~~~~~G~~~~K~~~~~~~~~K~G~~~~~~~~~~d~e~v~avR~a~g~d~~l~vDaN~~~~~~~A~~~~~~L~ 237 (410)
T 3dip_A 158 RDAGVLAESLVAEGYAAMKIWPFDDFASITPHHISLTDLKDGLEPFRKIRAAVGQRIEIMCELHSLWGTHAAARICNALA 237 (410)
T ss_dssp -CHHHHHHHHHHTTCSEEEECTTHHHHTTCTTCCCHHHHHHHHHHHHHHHHHHTTSSEEEEECTTCBCHHHHHHHHHHGG
T ss_pred hhHHHHHHHHHHcCCCEEEECCccCccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34555667778899999998421 0 0 011234567777764 46788888888888766555432
Q ss_pred ---CCEEEEEeecCCCCCCc-cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEccc
Q 023494 188 ---VDLVLIMSVNPGFGGQS-FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSA 256 (281)
Q Consensus 188 ---vD~IlvmsV~pG~~GQ~-f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSa 256 (281)
+++| .|+ +.+..++-.+++++.. +++|+.|+.+. ++.+..+++.| +|++.+--.
T Consensus 238 ~~~i~~i----------EqP~~~~~~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k~~ 297 (410)
T 3dip_A 238 DYGVLWV----------EDPIAKMDNIPAVADLRRQT-----RAPICGGENLAGTRRFHEMLCADAIDFVMLDLT 297 (410)
T ss_dssp GGTCSEE----------ECCBSCTTCHHHHHHHHHHH-----CCCEEECTTCCSHHHHHHHHHTTCCSEEEECTT
T ss_pred hcCCCEE----------ECCCCCcccHHHHHHHHhhC-----CCCEEecCCcCCHHHHHHHHHcCCCCeEeeccc
Confidence 3444 256 4555566666666654 47899999998 77888888876 688876533
|
| >2poz_A Putative dehydratase; octamer, structural genomics, P protein structure initiative, NEW YORK SGX research center structural genomics, nysgxrc; 2.04A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=87.78 E-value=1.4 Score=40.95 Aligned_cols=117 Identities=12% Similarity=0.032 Sum_probs=75.2
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccc-----------------cccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHH
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQ-----------------SSTIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAI 181 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea-----------------~~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~ 181 (281)
.+|+.+.+ .+.+.|.+.+=+|.-. .......+.++++|+ . ++.+.+..|.....+..
T Consensus 136 ~~~~~~~~~a~~~~~~Gf~~vKik~g~~~~g~~~~~~~~gg~~~~~~~~~~e~v~avr~a~G~d~~l~vD~n~~~~~~~a 215 (392)
T 2poz_A 136 DTPDEFARAVERPLKEGYGALKFYPLAQRVGSALQHVTRRSMSAEAIELAYRRVKAVRDAAGPEIELMVDLSGGLTTDET 215 (392)
T ss_dssp CSHHHHHHHTHHHHHTTCSEEEECCCCEEETTEEECCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCEEEEecccccccccccccccCCcchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 46776654 3567899999988541 011234467777777 3 46677788877777665
Q ss_pred HHhhcc---CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 182 ECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 182 ~~~l~~---vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.++++. .+... ++ |++.+..++-.+++++.. +++|..|+.+. ++.+.++++.| +|++.+-
T Consensus 216 ~~~~~~l~~~~i~~---iE-----~P~~~~~~~~~~~l~~~~-----~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 280 (392)
T 2poz_A 216 IRFCRKIGELDICF---VE-----EPCDPFDNGALKVISEQI-----PLPIAVGERVYTRFGFRKIFELQACGIIQPD 280 (392)
T ss_dssp HHHHHHHGGGCEEE---EE-----CCSCTTCHHHHHHHHHHC-----SSCEEECTTCCHHHHHHHHHTTTCCSEECCC
T ss_pred HHHHHHHHhcCCCE---EE-----CCCCcccHHHHHHHHhhC-----CCCEEecCCcCCHHHHHHHHHcCCCCEEecC
Confidence 555443 23222 22 445555566666666543 47999999997 78888888776 7877653
|
| >4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A* | Back alignment and structure |
|---|
Probab=87.56 E-value=8.6 Score=34.35 Aligned_cols=142 Identities=20% Similarity=0.234 Sum_probs=76.5
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccc---cC------CHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNI---TI------GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~---~~------G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv 144 (281)
+..+.+.+.|+|+| ||==-..=|.- +. =..+|+.|++ .+.++-+| +.+|+ ..+.+.++||++|-=
T Consensus 34 ~~a~~m~~~GAdiI--DIGgeSTRPga~~vs~eeE~~Rv~pvi~~l~~-~~v~iSID--T~~~~-Va~~al~aGa~iIND 107 (270)
T 4hb7_A 34 NRVKAMIDEGADII--DVGGVSTRPGHEMVTLEEELNRVLPVVEAIVG-FDVKISVD--TFRSE-VAEACLKLGVDMIND 107 (270)
T ss_dssp HHHHHHHHTTCSEE--EEESCCCSTTCCCCCHHHHHHHHHHHHHHHTT-SSSEEEEE--CSCHH-HHHHHHHHTCCEEEE
T ss_pred HHHHHHHHCCCCEE--EECCccCCCCCCCCchHHHHHHHHHHHHHhhc-CCCeEEEE--CCCHH-HHHHHHHhccceecc
Confidence 33445667899986 44211222321 11 1235566665 45555553 45554 567788999999862
Q ss_pred -cccccccccHHHHHHHHHHcCCcEEEEECCCCCH-----HHHHHhhc-c--------C--CEEEEEeecCCCCCCccch
Q 023494 145 -HCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-----SAIECVLD-V--------V--DLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 145 -h~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-----e~~~~~l~-~--------v--D~IlvmsV~pG~~GQ~f~~ 207 (281)
-.-. .+ .+.++.+.++|+.+.+.-++.+|- +++..++. . + +.|++ +||+|=-+-..
T Consensus 108 Vs~g~---~d-~~m~~~va~~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~Iil---DPGiGFgKt~~ 180 (270)
T 4hb7_A 108 QWAGL---YD-HRMFQIVAKYDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWL---DPGIGFAKTRN 180 (270)
T ss_dssp TTTTS---SC-THHHHHHHHTTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEE---ECCTTSSCCHH
T ss_pred ccccc---cc-hhHHHHHHHcCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEE---eCCCCcccccc
Confidence 2111 11 256777788988887765544432 22222221 1 2 33443 99987434445
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.++-|+++..+.. +++++-|
T Consensus 181 ~N~~ll~~l~~~~~---lg~PvLv 201 (270)
T 4hb7_A 181 EEAEVMARLDELVA---TEYPVLL 201 (270)
T ss_dssp HHHHHHTCHHHHHT---TCSCBEE
T ss_pred cHHHHHhhHHHHhc---CCCCEEE
Confidence 56666777666642 3456544
|
| >3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A | Back alignment and structure |
|---|
Probab=87.49 E-value=3.8 Score=35.61 Aligned_cols=131 Identities=10% Similarity=0.037 Sum_probs=77.2
Q ss_pred ceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCc-ccccccCCHHHHHHcCcC---CCCCee-EEEE------e-
Q 023494 58 IIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGR-FVPNITIGPLVVDALRPV---TDLPLD-VHLM------I- 124 (281)
Q Consensus 58 ~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~-fvpn~~~G~~~I~~ir~~---t~~~id-aHLm------v- 124 (281)
++++-...++ +...+++.++.+.+.|.+.+++..-+.. ++....+....++++|+. .++.+. +|.- .
T Consensus 17 ~~~gi~~~~~~~~~~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~l~ 96 (295)
T 3cqj_A 17 IPLGIYEKALPAGECWLERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQRLALVNAIVETGVRVPSMCLSAHRRFPLG 96 (295)
T ss_dssp CCEEEEGGGSCCCSCHHHHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHHHHHHHHHHHHHCCEEEEEEEGGGGTSCTT
T ss_pred ccceeeeecCCCCCCHHHHHHHHHhcCCCEEEEecCCcccccCcccCCHHHHHHHHHHHHHcCCeEEEEecCcccCCCCC
Confidence 4455555555 3468999999999999999988643321 010122344445555442 355543 3321 1
Q ss_pred -cChh----------hHHHHHHHcCCCEEEEccccc----c--------cccHHHHHHHHHHcCCcEEEEECCC---CCH
Q 023494 125 -VEPE----------QRVPDFIKAGADIVSVHCEQS----S--------TIHLHRTLNQIKDLGAKAGVVLNPA---TSL 178 (281)
Q Consensus 125 -~dp~----------~~i~~~~~aGAd~Itvh~Ea~----~--------~~~i~~~l~~ik~~G~k~Glai~p~---t~i 178 (281)
.||. +.++.+.+.|++.|.+|.-.. . .+.+.++.+.++++|+++++--.+. ...
T Consensus 97 ~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~~~~ 176 (295)
T 3cqj_A 97 SEDDAVRAQGLEIMRKAIQFAQDVGIRVIQLAGYDVYYQEANNETRRRFRDGLKESVEMASRAQVTLAMEIMDYPLMNSI 176 (295)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHTCCEEEECCCSCSSSCCCHHHHHHHHHHHHHHHHHHHHHTCEEEEECCSSGGGCSH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCHHHHHHHHHHHHHHHHHHHHHhCCEEEEeeCCCcccCCH
Confidence 1332 235556788999999985320 0 1225566677788999988876554 244
Q ss_pred HHHHHhhccC
Q 023494 179 SAIECVLDVV 188 (281)
Q Consensus 179 e~~~~~l~~v 188 (281)
+.+..+++.+
T Consensus 177 ~~~~~l~~~v 186 (295)
T 3cqj_A 177 SKALGYAHYL 186 (295)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhc
Confidence 5566666654
|
| >3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=87.49 E-value=15 Score=32.71 Aligned_cols=172 Identities=15% Similarity=0.109 Sum_probs=99.0
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++..+ +++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 24 ~iD~~~l~~lv~~li~~Gv~gl~~---~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~ 100 (297)
T 3flu_A 24 SIHYEQLRDLIDWHIENGTDGIVA---VGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEK 100 (297)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEE---SSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEe---CccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHH
Confidence 467778889999999999997643 2332222333333 34443332 2478999887777664 4556778
Q ss_pred cCCCEEEEccc---ccccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCE---QSSTIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~E---a~~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|||.+.+..- ..+.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.++.+...++.+= .-.
T Consensus 101 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK----------dss 170 (297)
T 3flu_A 101 AGADYTLSVVPYYNKPSQEGIYQHFKTIAEATSIPMIIYNVPGRTVVSMTNDTILRLAEIPNIVGVK----------EAS 170 (297)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSSCCCHHHHHHHTTSTTEEEEE----------ECS
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECCchhccCCCHHHHHHHHcCCCEEEEE----------eCC
Confidence 99999877632 1112234444444433 466666654442 3456777776444444321 111
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
..+.++.++++..+ .++.+ ..| - -+.+-.....|++.+|.|.+
T Consensus 171 gd~~~~~~~~~~~~---~~f~v-~~G-~-d~~~l~~l~~G~~G~is~~a 213 (297)
T 3flu_A 171 GNIGSNIELINRAP---EGFVV-LSG-D-DHTALPFMLCGGHGVITVAA 213 (297)
T ss_dssp CCHHHHHHHHHHSC---TTCEE-EEC-C-GGGHHHHHHTTCCEEEESGG
T ss_pred CCHHHHHHHHHhcC---CCeEE-EEC-c-HHHHHHHHhCCCCEEEechH
Confidence 12455555555432 23544 333 2 34566778899999999965
|
| >3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=87.49 E-value=0.6 Score=42.24 Aligned_cols=191 Identities=10% Similarity=0.084 Sum_probs=106.1
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEE---e-e--eCcccccc-----cCCHHHHHHcCcCCCCCeeEEEEe-
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVD---V-M--DGRFVPNI-----TIGPLVVDALRPVTDLPLDVHLMI- 124 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiD---I-m--DG~fvpn~-----~~G~~~I~~ir~~t~~~idaHLmv- 124 (281)
+.+..|..+..- . -+.++++|.|.+-+- + | =| .|.. ..=...++.|.+.++.|+.+|+=.
T Consensus 21 ~~i~~~~a~D~~-----s-A~i~e~aGf~ai~vs~s~~a~~~lG--~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~G 92 (287)
T 3b8i_A 21 RCYHTASVFDPM-----S-ARIAADLGFECGILGGSVASLQVLA--APDFALITLSEFVEQATRIGRVARLPVIADADHG 92 (287)
T ss_dssp CCEECEECCSHH-----H-HHHHHHTTCSCEEECHHHHHHHHHS--CCSSSCSCHHHHHHHHHHHHTTCSSCEEEECTTC
T ss_pred CcEEEecCCCHH-----H-HHHHHHcCCCEEEeCcHHHHHHhcC--CCCCCCCCHHHHHHHHHHHHhcCCCCEEEECCCC
Confidence 455556555222 1 335566788887662 0 1 12 1221 112334566666677888888754
Q ss_pred -cChh---hHHHHHHHcCCCEEEEccccc------------ccccHHHHHHHHHHcCCcEEEEECCCC---------CHH
Q 023494 125 -VEPE---QRVPDFIKAGADIVSVHCEQS------------STIHLHRTLNQIKDLGAKAGVVLNPAT---------SLS 179 (281)
Q Consensus 125 -~dp~---~~i~~~~~aGAd~Itvh~Ea~------------~~~~i~~~l~~ik~~G~k~Glai~p~t---------~ie 179 (281)
-+|. +.+..+.++|+..|.+-.-.. +.++..+.++++++.+...++.++-.| -++
T Consensus 93 yg~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~ai~ 172 (287)
T 3b8i_A 93 YGNALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAVIQ 172 (287)
T ss_dssp SSSHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHHHH
Confidence 2564 346678889999998753310 112456777778887654333332221 223
Q ss_pred HHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe-EEEecCCCh-hcHHHHHHcCCcEEEEccc
Q 023494 180 AIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW-IEVDGGVGP-KNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 180 ~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~-I~VDGGI~~-e~i~~~~~aGAD~~VvGSa 256 (281)
+.+.|.+ .+|.|.+-++ . ..+.++++.+.+ ++| +.+.||-++ -+..++.+.|+..++.|..
T Consensus 173 Ra~ay~eAGAd~i~~e~~----~-------~~~~~~~i~~~~-----~~P~ii~~~g~~~~~~~~eL~~lGv~~v~~~~~ 236 (287)
T 3b8i_A 173 RTLAYQEAGADGICLVGV----R-------DFAHLEAIAEHL-----HIPLMLVTYGNPQLRDDARLARLGVRVVVNGHA 236 (287)
T ss_dssp HHHHHHHTTCSEEEEECC----C-------SHHHHHHHHTTC-----CSCEEEECTTCGGGCCHHHHHHTTEEEEECCCH
T ss_pred HHHHHHHcCCCEEEecCC----C-------CHHHHHHHHHhC-----CCCEEEeCCCCCCCCCHHHHHHcCCcEEEEChH
Confidence 4444544 4898876322 1 122333333322 234 335566554 4789999999999999988
Q ss_pred ccCCCCHHHHHHHHHH
Q 023494 257 VFGAKDYAEAIKGIKT 272 (281)
Q Consensus 257 If~a~dp~~~~~~l~~ 272 (281)
.+.+.-.. ..+.|++
T Consensus 237 ~~raa~~a-~~~~l~~ 251 (287)
T 3b8i_A 237 AYFAAIKA-TYDCLRE 251 (287)
T ss_dssp HHHHHHHH-HHHHHHH
T ss_pred HHHHHHHH-HHHHHHH
Confidence 88643333 5555554
|
| >3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus} | Back alignment and structure |
|---|
Probab=87.47 E-value=1.3 Score=38.46 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=73.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEE-------e-----------cCh
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLM-------I-----------VEP 127 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLm-------v-----------~dp 127 (281)
...+++.++.+.+.|.+.+++..-+.. .+....++++|+. .++.+.++-. . .||
T Consensus 20 ~~~l~~~l~~~~~~G~~~vEl~~~~~~-----~~~~~~~~~~~~~l~~~gl~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 94 (290)
T 3tva_A 20 DAGLGVHLEVAQDLKVPTVQVHAPHPH-----TRTREHAQAFRAKCDAAGIQVTVIFGGFDGESYADIPTTARTVGLVPL 94 (290)
T ss_dssp SSSSSBCHHHHHHTTCSEEEEECCCGG-----GCSHHHHHHHHHHHHHTTCEEEEEECCCTTCCCSSHHHHHHHSSSCST
T ss_pred CCCHHHHHHHHHHcCCCEEEecCCCCC-----cCCHHHHHHHHHHHHHcCCEEEEEeeccCCcccccccccccccCCCCH
Confidence 357778899999999999988754432 1344555555442 5666666522 0 133
Q ss_pred h----------hHHHHHHHcCCCEEEEcccccc----------cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc
Q 023494 128 E----------QRVPDFIKAGADIVSVHCEQSS----------TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV 187 (281)
Q Consensus 128 ~----------~~i~~~~~aGAd~Itvh~Ea~~----------~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~ 187 (281)
. +.++.+.+.|+..|.+|.-..+ .+.+.++.+.++++|+++++--.++ ..+.+..+++.
T Consensus 95 ~~r~~~~~~~~~~i~~a~~lG~~~v~~~~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~-~~~~~~~l~~~ 173 (290)
T 3tva_A 95 ETRASRVAEMKEISDFASWVGCPAIGLHIGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQE-SADHLLEFIED 173 (290)
T ss_dssp TTHHHHHHHHHHHHHHHHHHTCSEEEECCCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCSS-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCCC-CHHHHHHHHHh
Confidence 1 3455667889999999842100 1235667777888999998876654 45566677766
Q ss_pred CC
Q 023494 188 VD 189 (281)
Q Consensus 188 vD 189 (281)
++
T Consensus 174 ~~ 175 (290)
T 3tva_A 174 VN 175 (290)
T ss_dssp HC
T ss_pred cC
Confidence 43
|
| >2hxt_A L-fuconate dehydratase; enolase superfamily, D-erythromohydr unknown function; HET: EHM; 1.70A {Xanthomonas campestris PV} PDB: 1yey_A 2hxu_A* 2hne_A | Back alignment and structure |
|---|
Probab=87.34 E-value=2 Score=40.61 Aligned_cols=114 Identities=9% Similarity=0.044 Sum_probs=76.6
Q ss_pred ChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
+|+.+.+ .+.+.|.+.+=+|.-. +.....+.++++|+ . ++.+.+..|.....+...++++. +++|
T Consensus 198 ~~e~~~~~a~~~~~~Gf~~vKik~g~-~~~~d~e~v~avR~a~G~d~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i--- 273 (441)
T 2hxt_A 198 SDEKLVRLAKEAVADGFRTIKLKVGA-NVQDDIRRCRLARAAIGPDIAMAVDANQRWDVGPAIDWMRQLAEFDIAWI--- 273 (441)
T ss_dssp CHHHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHHHHHTTGGGCCSCE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEccCC-CHHHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHhcCCCee---
Confidence 6766654 4567899999999753 22334467777877 3 46777888887777766666543 3333
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++-.+++++... .++|..|+.++ ++.+..+++.| +|++.+-
T Consensus 274 -------EqP~~~~d~~~~~~l~~~~~----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 324 (441)
T 2hxt_A 274 -------EEPTSPDDVLGHAAIRQGIT----PVPVSTGEHTQNRVVFKQLLQAGAVDLIQID 324 (441)
T ss_dssp -------ECCSCTTCHHHHHHHHHHHT----TSCEEECTTCCSHHHHHHHHHHTCCSEECCC
T ss_pred -------eCCCCHHHHHHHHHHHhhCC----CCCEEEeCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 35555555666666666542 37899999997 77888887776 6877654
|
| >1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=4.3 Score=34.82 Aligned_cols=217 Identities=14% Similarity=0.147 Sum_probs=106.4
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCC---eeEEE------EecC
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLP---LDVHL------MIVE 126 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~---idaHL------mv~d 126 (281)
+|..++... ..+++.++.+.+.|.+.+++...+.+..+...+....++++|+. .++. +.+|. ...|
T Consensus 3 ~~G~~~~~~--~~l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~l~~~~ 80 (285)
T 1qtw_A 3 YIGAHVSAA--GGLANAAIRAAEIDATAFALFTKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPV 80 (285)
T ss_dssp EEEEECCCT--TCHHHHHHHHHHTTCSEEECCSSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSS
T ss_pred ceeEEeccc--cCHHHHHHHHHHcCCCEEEeeCCCCCcCcCCCCCHHHHHHHHHHHHHcCCCceeEEecCCcccccCCCC
Confidence 455554443 47999999999999999887322221111112344455555432 3444 44443 1124
Q ss_pred hh----------hHHHHHHHcCCCEEEEcccccc-----cccHHHHHHHH-----HHcCCcEEEEECCC------CCHHH
Q 023494 127 PE----------QRVPDFIKAGADIVSVHCEQSS-----TIHLHRTLNQI-----KDLGAKAGVVLNPA------TSLSA 180 (281)
Q Consensus 127 p~----------~~i~~~~~aGAd~Itvh~Ea~~-----~~~i~~~l~~i-----k~~G~k~Glai~p~------t~ie~ 180 (281)
|. +.++.+.+.|+..|.+|.-... .+....+++.+ +++|+++++--.+. +..+.
T Consensus 81 ~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~l~~l~a~~~gv~l~lEn~~~~~~~~~~~~~~ 160 (285)
T 1qtw_A 81 TEALEKSRDAFIDEMQRCEQLGLSLLNFHPGSHLMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEH 160 (285)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCEEEECCCBCTTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCEEEECcCCCCCCCCHHHHHHHHHHHHHHHHhccCCCEEEEecCCCCCCcccCCHHH
Confidence 42 2355567899999999854210 01122222222 23688887765433 25566
Q ss_pred HHHhhccC---CEEEEEeecCC---CCCCcc-chhHHH-HHHHHHHHhh-hcCCCCeE---------------E-EecCC
Q 023494 181 IECVLDVV---DLVLIMSVNPG---FGGQSF-IESQVK-KISDLRRMCL-EKGVNPWI---------------E-VDGGV 235 (281)
Q Consensus 181 ~~~~l~~v---D~IlvmsV~pG---~~GQ~f-~~~~l~-kI~~lr~l~~-~~~~~~~I---------------~-VDGGI 235 (281)
+..+++.+ +.+-+ +.++| ..|... .++.++ -++++.+... ++=..+.+ . =+|-|
T Consensus 161 ~~~l~~~v~~~~~~g~-~~D~~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vH~~D~~~~~~~~~~~h~~~G~G~i 239 (285)
T 1qtw_A 161 LAAIIDGVEDKSRVGV-CIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFGSRVDRHHSLGEGNI 239 (285)
T ss_dssp HHHHHHHCSCGGGEEE-EEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCTTCCCCCEECTTTSSS
T ss_pred HHHHHHhhcCccceEE-EEEhHhHHHcCCCcCChHHHHHHHHHHHHhcCccceeEEEEecCCCcccCCcccccCCCCCCC
Confidence 77777766 33433 23333 123222 121221 1333333221 10000001 0 13556
Q ss_pred ChhcHH-HHHHcCCcE--EEEcccccCCCCHHHHHHHHHHhcCcCccC
Q 023494 236 GPKNAY-KVIEAGANA--LVAGSAVFGAKDYAEAIKGIKTSKRPQAVA 280 (281)
Q Consensus 236 ~~e~i~-~~~~aGAD~--~VvGSaIf~a~dp~~~~~~l~~~~~~~~~~ 280 (281)
..+.+- .+.+.|-+. +++= .++.++.++.++.+++..++.+||
T Consensus 240 d~~~~~~~L~~~gy~g~~~~lE--~~~~~~~~~s~~~lr~~~~~~~~~ 285 (285)
T 1qtw_A 240 GHDAFRWIMQDDRFDGIPLILE--TINPDIWAEEIAWLKAQQTEKAVA 285 (285)
T ss_dssp CSHHHHHHHTCGGGTTSEEEEC--CSCGGGHHHHHHHHHHHTTSSCCC
T ss_pred CHHHHHHHHhccCcCCCCEEEe--cCCCcchHHHHHHHHHHHhhhccC
Confidence 655443 444555543 3332 233356677888888888776664
|
| >1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=87.16 E-value=2.5 Score=39.48 Aligned_cols=77 Identities=23% Similarity=0.264 Sum_probs=49.8
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
+..++.. + .+..+.++.+.+.|+|.++++..-|. | .+-.+.++++|+.+ +.|+.+. -+.++ +..+.+.++|
T Consensus 144 ~~~~i~~-~-~~~~~~a~~~~~~G~d~i~i~~~~g~--~--~~~~e~i~~ir~~~~~~pviv~-~v~~~-~~a~~a~~~G 215 (404)
T 1eep_A 144 VGAAVSI-D-IDTIERVEELVKAHVDILVIDSAHGH--S--TRIIELIKKIKTKYPNLDLIAG-NIVTK-EAALDLISVG 215 (404)
T ss_dssp CEEEECS-C-TTHHHHHHHHHHTTCSEEEECCSCCS--S--HHHHHHHHHHHHHCTTCEEEEE-EECSH-HHHHHHHTTT
T ss_pred EEEEeCC-C-hhHHHHHHHHHHCCCCEEEEeCCCCC--h--HHHHHHHHHHHHHCCCCeEEEc-CCCcH-HHHHHHHhcC
Confidence 4455543 2 23556677888899999887432221 2 23356778888875 6777651 23333 4677888999
Q ss_pred CCEEEE
Q 023494 139 ADIVSV 144 (281)
Q Consensus 139 Ad~Itv 144 (281)
+|+|.+
T Consensus 216 ad~I~v 221 (404)
T 1eep_A 216 ADCLKV 221 (404)
T ss_dssp CSEEEE
T ss_pred CCEEEE
Confidence 999999
|
| >3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A | Back alignment and structure |
|---|
Probab=87.15 E-value=17 Score=32.81 Aligned_cols=172 Identities=12% Similarity=0.115 Sum_probs=99.2
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++..+ +++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 40 ~iD~~~l~~lv~~li~~Gv~Gl~v---~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~ 116 (314)
T 3qze_A 40 RLDWDSLAKLVDFHLQEGTNAIVA---VGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKS 116 (314)
T ss_dssp CBCHHHHHHHHHHHHHHTCCEEEE---SSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHH
Confidence 467778889999999999997633 3332222333333 34433332 2378898887777664 4556778
Q ss_pred cCCCEEEEccc---ccccccHHHHHHHHHH-cCCcEEEEECC-----CCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCE---QSSTIHLHRTLNQIKD-LGAKAGVVLNP-----ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~E---a~~~~~i~~~l~~ik~-~G~k~Glai~p-----~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|||.+.+..- ..+.+.+.+..+.+-+ .++.+.+=-+| +-+.+.+.++.+...++.+= +. .|
T Consensus 117 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK--ds--sg----- 187 (314)
T 3qze_A 117 GGADACLLVTPYYNKPTQEGMYQHFRHIAEAVAIPQILYNVPGRTSCDMLPETVERLSKVPNIIGIK--EA--TG----- 187 (314)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHSCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEE--EC--SC-----
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHHhcCCCEEEEE--cC--CC-----
Confidence 99999887632 1112234444444433 46666665444 23556777776544444331 11 11
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++..+ .++.+ ..| -. +.+-.....|++.+|.|.+
T Consensus 188 -d~~~~~~~~~~~~---~~f~v-~~G-~d-~~~l~~l~~Ga~G~is~~a 229 (314)
T 3qze_A 188 -DLQRAKEVIERVG---KDFLV-YSG-DD-ATAVELMLLGGKGNISVTA 229 (314)
T ss_dssp -CHHHHHHHHHHSC---TTSEE-EES-CG-GGHHHHHHTTCCEEEESGG
T ss_pred -CHHHHHHHHHHcC---CCeEE-Eec-Ch-HHHHHHHHCCCCEEEecHH
Confidence 2445555555432 23544 333 33 3466678999999999965
|
| >2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B* | Back alignment and structure |
|---|
Probab=87.06 E-value=8.6 Score=34.94 Aligned_cols=135 Identities=16% Similarity=0.123 Sum_probs=72.9
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc-----cCCHHHHHHcCcCCCCCeeEEEEecChhh---HHHHHHHcCCC-
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-----TIGPLVVDALRPVTDLPLDVHLMIVEPEQ---RVPDFIKAGAD- 140 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-----~~G~~~I~~ir~~t~~~idaHLmv~dp~~---~i~~~~~aGAd- 140 (281)
....+..+.+.+.|+|+| ||-=...-|+- ..-.++|+.+++.++.|+.+ .=+.||+. .++.+.++|++
T Consensus 74 ~~~~~~A~~~v~~GAdiI--DIg~~StrP~~~~vs~eee~~vV~~v~~~~~vplsI-~DT~~~~~~~~V~eaal~aga~~ 150 (310)
T 2h9a_B 74 NDPVAWAKKCVEYGADIV--ALRLVSAHPDGQNRSGAELAEVCKAVADAIDVPLMI-IGCGVEEKDAEIFPVIGEALSGR 150 (310)
T ss_dssp TCHHHHHHHHHHTTCSEE--EEECGGGCTTTTCCCHHHHHHHHHHHHHHCSSCEEE-ECCSCHHHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHcCCcEE--EEeCccCCCCCCCCCHHHHHHHHHHHHHhCCceEEE-ECCCCCCCCHHHHHHHHHhCCCC
Confidence 345555666778899986 44332222431 11244677777655555432 02333332 46778899998
Q ss_pred --EE-EEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-----C--CEEEEEeecCCCC--CCccchh
Q 023494 141 --IV-SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-----V--DLVLIMSVNPGFG--GQSFIES 208 (281)
Q Consensus 141 --~I-tvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-----v--D~IlvmsV~pG~~--GQ~f~~~ 208 (281)
+| .+-.+ ...+.+..++++|..+.+.- +. .++.+++.... + +-|++ +||++ |..+ .+
T Consensus 151 k~iINdvs~~-----~~~~~~~~aa~~g~~vv~m~-~~-dv~~l~~~~~~a~~~Gi~~e~Iil---DPg~g~~g~~~-e~ 219 (310)
T 2h9a_B 151 NCLLSSATKD-----NYKPIVATCMVHGHSVVASA-PL-DINLSKQLNIMIMEMNLAPNRIIM---DPLIGALGYGI-EY 219 (310)
T ss_dssp CCEEEEECTT-----THHHHHHHHHHHTCEEEEEC-SS-CHHHHHHHHHHHHTTTCCGGGEEE---ECCCCCTTTTH-HH
T ss_pred CCEEEECCCC-----ccHHHHHHHHHhCCCEEEEC-hh-HHHHHHHHHHHHHHCCCChhhEEE---eCCCccccCch-Hh
Confidence 44 33333 35678888899998766643 22 35545544332 3 33433 89875 3111 23
Q ss_pred HHHHHHHHHH
Q 023494 209 QVKKISDLRR 218 (281)
Q Consensus 209 ~l~kI~~lr~ 218 (281)
++..++.+|.
T Consensus 220 ~~~~l~~ir~ 229 (310)
T 2h9a_B 220 SYSIIERMRL 229 (310)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4344444454
|
| >2o7s_A DHQ-SDH PR, bifunctional 3-dehydroquinate dehydratase/shikima dehydrogenase; shikimate, NADPH, dehydroshikimate, bifunctional enzyme; HET: DHK TLA NAP; 1.78A {Arabidopsis thaliana} PDB: 2o7q_A* 2gpt_A* | Back alignment and structure |
|---|
Probab=86.99 E-value=1.9 Score=41.82 Aligned_cols=87 Identities=13% Similarity=0.185 Sum_probs=57.4
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh--------h
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP--------E 128 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp--------~ 128 (281)
..+|+.+|..-|+..+.+.++...+.|+|.+++.+ |- ..++. ..+.++.+++.+++|+.+++-.... .
T Consensus 4 ~~~icv~l~~~~~~~~~~~~~~~~~~g~D~vElRv-D~--l~~~~-~~~~l~~l~~~~~~PiI~T~R~~~eGG~~~~~~~ 79 (523)
T 2o7s_A 4 PSLICAPVMADSIDKMVIETSKAHELGADLVEIRL-DW--LKDFN-PLEDLKTIIKKSPLPTLFTYRPKWEGGQYEGDEN 79 (523)
T ss_dssp CCEEEEEECCSSHHHHHHHHHHHHHHTCSEEEEEG-GG--CSSCC-HHHHHHHHHHHCSSCEEEECCBGGGTSSBCSCHH
T ss_pred CCEEEEEecCCCHHHHHHHHHHhhhcCCCEEEEEE-ec--ccccC-hHHHHHHHHhcCCCcEEEEecccccCCCCCCCHH
Confidence 55899999998888877778777777899999963 21 11111 1345666666677899888765322 2
Q ss_pred hH---HHHHHHcCCCEEEEccc
Q 023494 129 QR---VPDFIKAGADIVSVHCE 147 (281)
Q Consensus 129 ~~---i~~~~~aGAd~Itvh~E 147 (281)
.| ++.+.+.|+|+|-+-..
T Consensus 80 ~~~~ll~~~~~~~~~yiDvEl~ 101 (523)
T 2o7s_A 80 ERRDVLRLAMELGADYIDVELQ 101 (523)
T ss_dssp HHHHHHHHHHHHTCSEEEEEHH
T ss_pred HHHHHHHHHHHhCCCEEEEECC
Confidence 23 34456678888776543
|
| >3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4 | Back alignment and structure |
|---|
Probab=86.77 E-value=3.7 Score=36.65 Aligned_cols=155 Identities=17% Similarity=0.183 Sum_probs=81.9
Q ss_pred HHcCcCCCCCeeEEEEecChh-----hHHHHHHHcCCCEEEEccccc----ccccHH-----------------HHHHHH
Q 023494 108 DALRPVTDLPLDVHLMIVEPE-----QRVPDFIKAGADIVSVHCEQS----STIHLH-----------------RTLNQI 161 (281)
Q Consensus 108 ~~ir~~t~~~idaHLmv~dp~-----~~i~~~~~aGAd~Itvh~Ea~----~~~~i~-----------------~~l~~i 161 (281)
+++|+.-.+.+..+++.-||. ++++.+.++|||+|-+..--+ +.+.++ +.++.+
T Consensus 12 ~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~ 91 (271)
T 3nav_A 12 QRLSAAQQGAFVPFVTIGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQI 91 (271)
T ss_dssp HHHHHTTBCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 334433335678888888884 345667788999999884321 011233 466677
Q ss_pred HHc--CCcEEEEE--CC--CCCHHHHHHhh-c-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 162 KDL--GAKAGVVL--NP--ATSLSAIECVL-D-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 162 k~~--G~k~Glai--~p--~t~ie~~~~~l-~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
|+. .+.+.+.. || .+.++.+.+-+ + .+|.+++ |.. ++ +...++++...+++.+.-.-+..
T Consensus 92 r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIi----pDl---p~-----ee~~~~~~~~~~~gl~~I~lvap 159 (271)
T 3nav_A 92 RARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLI----ADV---PT-----NESQPFVAAAEKFGIQPIFIAPP 159 (271)
T ss_dssp HHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEE----TTS---CG-----GGCHHHHHHHHHTTCEEEEEECT
T ss_pred HhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEE----CCC---CH-----HHHHHHHHHHHHcCCeEEEEECC
Confidence 765 44555543 33 13444333322 2 2787766 211 11 22445555555655543333444
Q ss_pred CCChhcHHHHHHcCCcEEEEcc--cccCCC-----CHHHHHHHHHHhc
Q 023494 234 GVGPKNAYKVIEAGANALVAGS--AVFGAK-----DYAEAIKGIKTSK 274 (281)
Q Consensus 234 GI~~e~i~~~~~aGAD~~VvGS--aIf~a~-----dp~~~~~~l~~~~ 274 (281)
--+.+.++.+.+.+.+.+-.-| ..++.. +..+.++++|+..
T Consensus 160 ~t~~eri~~i~~~~~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~ 207 (271)
T 3nav_A 160 TASDETLRAVAQLGKGYTYLLSRAGVTGAETKANMPVHALLERLQQFD 207 (271)
T ss_dssp TCCHHHHHHHHHHCCSCEEECCCC--------CCHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHCCCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc
Confidence 4556888888888777655422 234321 2346667777654
|
| >3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A* | Back alignment and structure |
|---|
Probab=86.72 E-value=3.7 Score=37.89 Aligned_cols=119 Identities=19% Similarity=0.294 Sum_probs=70.5
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcc-----ccc--c---cCC----------HHHHHHcCcCC--CCCeeEEEEecC-----
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRF-----VPN--I---TIG----------PLVVDALRPVT--DLPLDVHLMIVE----- 126 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~f-----vpn--~---~~G----------~~~I~~ir~~t--~~~idaHLmv~d----- 126 (281)
++.+.+.++|.|.|++-.-.|-. .|+ . .+| .++++++|+.. +.++-+.|=..+
T Consensus 162 ~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~~G 241 (363)
T 3l5l_A 162 DAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDGRD 241 (363)
T ss_dssp HHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSSCH
T ss_pred HHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCCCC
Confidence 44456678999998887654422 121 1 333 67888998874 467777664432
Q ss_pred ------hhhHHHHHHHcCCCEEEEccccc--------ccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc--CC
Q 023494 127 ------PEQRVPDFIKAGADIVSVHCEQS--------STIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV--VD 189 (281)
Q Consensus 127 ------p~~~i~~~~~aGAd~Itvh~Ea~--------~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~--vD 189 (281)
..++++.+.++|+|+++++.-.. ......+.++.+|+. ++.+ ++..-=+..+..++++.. +|
T Consensus 242 ~~~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~iPV-i~~GgI~s~e~a~~~l~~G~aD 320 (363)
T 3l5l_A 242 EQTLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAKLPV-TSAWGFGTPQLAEAALQANQLD 320 (363)
T ss_dssp HHHHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHTCCE-EECSSTTSHHHHHHHHHTTSCS
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcCCcE-EEeCCCCCHHHHHHHHHCCCcc
Confidence 22346677899999999995210 011123456666664 3332 222222466777777764 89
Q ss_pred EEEE
Q 023494 190 LVLI 193 (281)
Q Consensus 190 ~Ilv 193 (281)
+|.+
T Consensus 321 ~V~i 324 (363)
T 3l5l_A 321 LVSV 324 (363)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 8865
|
| >1x7f_A Outer surface protein; structural genomics, unknown function, MCSG, PSI, midwest center for struct genomics; 2.30A {Bacillus cereus atcc 14579} SCOP: b.62.1.2 c.1.8.12 | Back alignment and structure |
|---|
Probab=86.67 E-value=5.4 Score=37.50 Aligned_cols=106 Identities=14% Similarity=0.155 Sum_probs=70.6
Q ss_pred hHHHHHHHcCCCEEE--Ecc-ccc---ccccHHHHHHHHHHcCCcEEEEECCCCCHH------HHHHhhc-cCCEEEEEe
Q 023494 129 QRVPDFIKAGADIVS--VHC-EQS---STIHLHRTLNQIKDLGAKAGVVLNPATSLS------AIECVLD-VVDLVLIMS 195 (281)
Q Consensus 129 ~~i~~~~~aGAd~It--vh~-Ea~---~~~~i~~~l~~ik~~G~k~Glai~p~t~ie------~~~~~l~-~vD~Ilvms 195 (281)
.|++.+.++|...|. +|. |.. -.+.+.++++.++++|+++.+.++|.+--. .+..+.+ .++.| -
T Consensus 45 ~Yi~~a~~~Gf~~IFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DVsp~~~~~Lg~s~~dl~~f~~lGi~gL---R 121 (385)
T 1x7f_A 45 AYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELGADGI---R 121 (385)
T ss_dssp HHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHTCSEE---E
T ss_pred HHHHHHHHCCCCEEEccCCccCCChHHHHHHHHHHHHHHHHCCCEEEEECCHHHHHHcCCCHHHHHHHHHcCCCEE---E
Confidence 589999999998664 432 211 123578899999999999999999974321 2222222 35544 4
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCc
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN 249 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD 249 (281)
.+-||+++ ++..+. .+.++++|++=-..+.+.+..+.+.|+|
T Consensus 122 LD~Gf~~~-----------eia~ls-~n~~glkIeLNASt~~~~l~~l~~~~~n 163 (385)
T 1x7f_A 122 LDVGFDGL-----------TEAKMT-NNPYGLKIELNVSNDIAYLENILSHQAN 163 (385)
T ss_dssp ESSCCSSH-----------HHHHHT-TCTTCCEEEEETTSCSSHHHHHTTSSCC
T ss_pred EcCCCCHH-----------HHHHHh-cCCCCCEEEEeCcCCHHHHHHHHHcCCC
Confidence 57788772 223332 3345688999888888899999999998
|
| >3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A* | Back alignment and structure |
|---|
Probab=86.67 E-value=3.7 Score=35.58 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=48.5
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc-cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP-NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp-n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+-.=+|..|+. +.++.+.++|+|++.+ |+-- .- .-.+.++.+|+. +...-+-|-...|...++.+.+
T Consensus 59 ~~dvhLmv~dp~---~~i~~~~~aGAd~itv-----h~Ea~~~-~~~~~i~~i~~~-G~k~gv~lnp~tp~~~~~~~l~- 127 (231)
T 3ctl_A 59 PLDCHLMVTRPQ---DYIAQLARAGADFITL-----HPETING-QAFRLIDEIRRH-DMKVGLILNPETPVEAMKYYIH- 127 (231)
T ss_dssp CEEEEEESSCGG---GTHHHHHHHTCSEEEE-----CGGGCTT-THHHHHHHHHHT-TCEEEEEECTTCCGGGGTTTGG-
T ss_pred cEEEEEEecCHH---HHHHHHHHcCCCEEEE-----CcccCCc-cHHHHHHHHHHc-CCeEEEEEECCCcHHHHHHHHh-
Confidence 356667777774 4567888899999976 2211 11 124678888774 6666666655566556555554
Q ss_pred CCCEEEEc
Q 023494 138 GADIVSVH 145 (281)
Q Consensus 138 GAd~Itvh 145 (281)
++|+|.++
T Consensus 128 ~~D~Vlvm 135 (231)
T 3ctl_A 128 KADKITVM 135 (231)
T ss_dssp GCSEEEEE
T ss_pred cCCEEEEe
Confidence 79999754
|
| >4dxk_A Mandelate racemase / muconate lactonizing enzyme protein; enolase, mandelate racemase subgroup, enzyme function initia EFI; 1.25A {Agrobacterium tumefaciens} PDB: 4dx3_A 2pod_A | Back alignment and structure |
|---|
Probab=86.66 E-value=1.5 Score=41.10 Aligned_cols=115 Identities=8% Similarity=0.067 Sum_probs=75.1
Q ss_pred cChhhHHHHHHHcCCCEEEEcccc----------c---ccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-
Q 023494 125 VEPEQRVPDFIKAGADIVSVHCEQ----------S---STIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 125 ~dp~~~i~~~~~aGAd~Itvh~Ea----------~---~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~- 187 (281)
.+|.+.++.+.+.|...+=+..-. . ..+.-.+.++++|+. ++.+.+..|.....+....+++.
T Consensus 154 ~~~~~~a~~~~~~G~~~~Kik~g~~~~~~~~~g~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L 233 (400)
T 4dxk_A 154 HRADELAHSLLEDGITAMKIWPFDAAAEKTRGQYISMPDLKSALEPFEKIRKAVGDKMDIMVEFHSMWQLLPAMQIAKAL 233 (400)
T ss_dssp -CHHHHHHHHHHTTCCEEEECTTHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHGGGSEEEEECTTCBCHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhCCCEEEEcCCCccccccccCcCCHHHHHHHHHHHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 456677778889999999887420 0 011223556677764 47788888988888766555443
Q ss_pred ----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 188 ----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 188 ----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
+++| .|++.+..++-.+++++.. +++|+.|+.+. ++.+..+++.| +|++.+-
T Consensus 234 ~~~~i~~i----------EeP~~~~~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~l~~~a~d~v~~d 291 (400)
T 4dxk_A 234 TPYQTFWH----------EDPIKMDSLSSLTRYAAVS-----PAPISASETLGSRWAFRDLLETGAAGVVMLD 291 (400)
T ss_dssp GGGCCSEE----------ECCBCTTSGGGHHHHHHHC-----SSCEEECTTCCHHHHHHHHHHTTCCCEEEEC
T ss_pred hhcCCCEE----------EcCCCcccHHHHHHHHHhC-----CCCEEecCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 3444 2455444444555565543 47899999998 67888888887 6888764
|
| >2egz_A 3-dehydroquinate dehydratase; aquifex aeolicus VF5, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: TLA; 1.75A {Aquifex aeolicus} PDB: 2ysw_A | Back alignment and structure |
|---|
Probab=86.61 E-value=14 Score=31.66 Aligned_cols=109 Identities=15% Similarity=0.196 Sum_probs=67.4
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccC--CHHHHHHcCcCCCCCeeEEEEec-----ChhhHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITI--GPLVVDALRPVTDLPLDVHLMIV-----EPEQRV 131 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~--G~~~I~~ir~~t~~~idaHLmv~-----dp~~~i 131 (281)
.|+.+|..- ++++.++.+...|+|.+++.+ | |..+... =.+.++.+|+. ++|+.+++-.. +...|+
T Consensus 2 ~icv~l~~~---~~~~~~~~~~~~~~D~vElRv-D--~l~~~~~~~v~~~~~~lr~~-~~PiI~T~R~~~eGG~~~~~~~ 74 (219)
T 2egz_A 2 LIAVPLDDT---NFSENLKKAKEKGADIVELRV-D--QFSDTSLNYVKEKLEEVHSQ-GLKTILTIRSPEEGGREVKNRE 74 (219)
T ss_dssp EEEEEECST---THHHHHHHHHHHTCSEEEEEG-G--GCSCCCHHHHHHHHHHHHHT-TCEEEEECCCGGGTCCCCTTHH
T ss_pred EEEEEeCCC---CHHHHHHHHHHcCCCEEEEEe-c--cccccCHHHHHHHHHHHHhc-CCcEEEEEeehhccCCCHHHHH
Confidence 467777754 455556666667899999873 2 1111111 12356667775 68898877653 233454
Q ss_pred H---HHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC--CCCC
Q 023494 132 P---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS 177 (281)
Q Consensus 132 ~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~--p~t~ 177 (281)
+ .+.+. +|+|-+-... .+....+.+.+++.|.++.+..+ ..||
T Consensus 75 ~ll~~~~~~-~d~iDvEl~~--~~~~~~l~~~~~~~g~kvI~S~Hdf~~tp 122 (219)
T 2egz_A 75 ELFEELSPL-SDYTDIELSS--RGLLVKLYNITKEAGKKLIISYHNFELTP 122 (219)
T ss_dssp HHHHHHTTT-SSEEEEETTC--HHHHHHHHHHHHHTTCEEEEEEEESSCCC
T ss_pred HHHHHHHhc-CCEEEEEccC--CccHHHHHHHHHHcCCEEEEEecCCCCCc
Confidence 4 44556 8999887652 12245778888899999888765 3455
|
| >3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=86.60 E-value=14 Score=32.96 Aligned_cols=172 Identities=15% Similarity=0.132 Sum_probs=98.7
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+ +.-|+.--..++..+ +++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 21 ~iD~~~l~~lv~~li~~Gv~gl---~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~ 97 (300)
T 3eb2_A 21 RVRADVMGRLCDDLIQAGVHGL---TPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEK 97 (300)
T ss_dssp CBCHHHHHHHHHHHHHTTCSCB---BTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEE---EECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHH
Confidence 4677788899999999999865 222332222333333 34443333 2478999988877764 4556678
Q ss_pred cCCCEEEEccc---ccccccHHHHHHHHH-HcCCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCE---QSSTIHLHRTLNQIK-DLGAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~E---a~~~~~i~~~l~~ik-~~G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|||.+.+..- ..+.+.+.+..+.+- ..++.+.+=-+|. -+.+.+.++.+...++.+= .-.
T Consensus 98 ~Gadavlv~~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnIvgiK----------dss 167 (300)
T 3eb2_A 98 LGADGILAILEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLDVIARLAEHPRIRYIK----------DAS 167 (300)
T ss_dssp HTCSEEEEEECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHHHHHHHHTSTTEEEEE----------ECS
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHHHHHHHHcCCCEEEEE----------cCC
Confidence 89998887622 111233444444443 3467777665664 2446677765444444321 111
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
..+.++.++++..++ ++.+ =.|-.. .+-.....|++.+|.|.+
T Consensus 168 gd~~~~~~~~~~~~~---~f~v--~~G~d~-~~~~~l~~G~~G~is~~a 210 (300)
T 3eb2_A 168 TNTGRLLSIINRCGD---ALQV--FSASAH-IPAAVMLIGGVGWMAGPA 210 (300)
T ss_dssp SBHHHHHHHHHHHGG---GSEE--EECTTS-CHHHHHHTTCCEEEEGGG
T ss_pred CCHHHHHHHHHHcCC---CeEE--EeCcHH-HHHHHHhCCCCEEEeChh
Confidence 124556666655443 2443 334333 455667899999999966
|
| >1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=86.52 E-value=1 Score=38.97 Aligned_cols=122 Identities=14% Similarity=0.098 Sum_probs=65.1
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
+-.-++-.|+ ++.++.+.++|+|++|+=.. ++ +. ..-.+.++.+++ .+..+-+-+-..+|...++.+.+ ++
T Consensus 65 ~~vhlmv~dp---~~~i~~~~~aGadgv~vh~e--~~-~~-~~~~~~~~~i~~-~g~~~gv~~~p~t~~e~~~~~~~-~~ 135 (230)
T 1tqj_A 65 LDVHLMIVEP---EKYVEDFAKAGADIISVHVE--HN-AS-PHLHRTLCQIRE-LGKKAGAVLNPSTPLDFLEYVLP-VC 135 (230)
T ss_dssp EEEEEESSSG---GGTHHHHHHHTCSEEEEECS--TT-TC-TTHHHHHHHHHH-TTCEEEEEECTTCCGGGGTTTGG-GC
T ss_pred EEEEEEccCH---HHHHHHHHHcCCCEEEECcc--cc-cc-hhHHHHHHHHHH-cCCcEEEEEeCCCcHHHHHHHHh-cC
Confidence 3333444565 45678888899999988311 00 21 234467777776 35555554433556555544443 89
Q ss_pred CEEEEccccc-----c-cccHHHHHHHHHH----c--CCcEEEE--ECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 140 DIVSVHCEQS-----S-TIHLHRTLNQIKD----L--GAKAGVV--LNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 140 d~Itvh~Ea~-----~-~~~i~~~l~~ik~----~--G~k~Gla--i~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
|+|.+..-.. . .+...+.++.+|+ + ++.+.+. |++ +.+.++.. .+|.+.+.
T Consensus 136 D~v~~msv~pg~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v~GGI~~----~~~~~~~~aGad~vvvG 201 (230)
T 1tqj_A 136 DLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLKP----NNTWQVLEAGANAIVAG 201 (230)
T ss_dssp SEEEEESSCC----CCCCGGGHHHHHHHHHHHHHHTCCCEEEEESSCCT----TTTHHHHHHTCCEEEES
T ss_pred CEEEEEEeccccCCccCcHHHHHHHHHHHHHHHhcCCCCcEEEECCcCH----HHHHHHHHcCCCEEEEC
Confidence 9996653211 0 1122333444443 3 3444443 444 33445544 58988774
|
| >2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus} | Back alignment and structure |
|---|
Probab=86.42 E-value=7.2 Score=34.82 Aligned_cols=167 Identities=18% Similarity=0.147 Sum_probs=92.7
Q ss_pred HHHHHcCCCeEEEE---e-eeCcccccc-----cCCHHHHHHcCcCCCCCeeEEEEec---Chh---hHHHHHHHcCCCE
Q 023494 77 KAVELAGCDWIHVD---V-MDGRFVPNI-----TIGPLVVDALRPVTDLPLDVHLMIV---EPE---QRVPDFIKAGADI 141 (281)
Q Consensus 77 ~~l~~~G~d~iHiD---I-mDG~fvpn~-----~~G~~~I~~ir~~t~~~idaHLmv~---dp~---~~i~~~~~aGAd~ 141 (281)
+.++++|.|.+-+- + +--++ |.. ..=...++.|...++.|+.+|+=.- +|. +.+..+.++|+..
T Consensus 30 ~~~~~aG~~ai~vsg~s~a~~~G~-pD~~~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~aGaag 108 (275)
T 2ze3_A 30 RLLEAAGFTAIGTTSAGIAHARGR-TDGQTLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAALGVAG 108 (275)
T ss_dssp HHHHHHTCSCEEECHHHHHHHSCC-CSSSSSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHTTCSE
T ss_pred HHHHHcCCCEEEECcHHHHHhCCC-CCCCCCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence 34556788887663 0 00011 221 1122345556555678888888663 564 3467788999999
Q ss_pred EEEcccc-------cccccHHHHHHHHHHc----CCcEEEEECCCC-----------CH----HHHHHhhc-cCCEEEEE
Q 023494 142 VSVHCEQ-------SSTIHLHRTLNQIKDL----GAKAGVVLNPAT-----------SL----SAIECVLD-VVDLVLIM 194 (281)
Q Consensus 142 Itvh~Ea-------~~~~~i~~~l~~ik~~----G~k~Glai~p~t-----------~i----e~~~~~l~-~vD~Ilvm 194 (281)
|.+-.-. .+.++..+.++.+++. |...-+--..+. .+ ++.+.|.+ .+|.|.+
T Consensus 109 v~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~~ai~Ra~ay~eAGAd~i~~- 187 (275)
T 2ze3_A 109 VNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLAETVRRGQAYADAGADGIFV- 187 (275)
T ss_dssp EEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHHHHHHHHHHHHHTTCSEEEC-
T ss_pred EEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHHHHHHHHHHHHHCCCCEEEE-
Confidence 8765321 0112344556666555 776544332222 12 23333434 4788764
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
+|.. ..+.++++.+.+ ++|+.+-++-..-+..++.+.|+..++.|...|.+
T Consensus 188 ---e~~~-------~~~~~~~i~~~~-----~~P~n~~~~~~~~~~~eL~~lGv~~v~~~~~~~ra 238 (275)
T 2ze3_A 188 ---PLAL-------QSQDIRALADAL-----RVPLNVMAFPGSPVPRALLDAGAARVSFGQSLMLA 238 (275)
T ss_dssp ---TTCC-------CHHHHHHHHHHC-----SSCEEEECCTTSCCHHHHHHTTCSEEECTTHHHHH
T ss_pred ---CCCC-------CHHHHHHHHHhc-----CCCEEEecCCCCCCHHHHHHcCCcEEEEChHHHHH
Confidence 3321 123344444443 25665554433446789999999999999887754
|
| >2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=86.42 E-value=0.58 Score=44.19 Aligned_cols=50 Identities=24% Similarity=0.316 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhhcCC-CCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 210 VKKISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~-~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+-++++++.+++.+. +..|++-||||++++..+.+. +|.|-+|+.+.++
T Consensus 251 ~~~v~~~r~~ld~~G~~~~~I~aSggl~~~~i~~l~~~-vD~~gvGt~l~~~ 301 (395)
T 2i14_A 251 RKIIEEVRWELKVRGYDWVKIFVSGGLDEEKIKEIVDV-VDAFGVGGAIASA 301 (395)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEESSCCHHHHHTTGGG-CSEEEECHHHHTC
T ss_pred HHHHHHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHh-CCEEEeCcccCCC
Confidence 4445666666665442 478999999999999999999 9999999987753
|
| >2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=86.39 E-value=9.1 Score=33.66 Aligned_cols=130 Identities=16% Similarity=0.087 Sum_probs=73.9
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCc---CCCCCee---EEE-------E
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRP---VTDLPLD---VHL-------M 123 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~---~t~~~id---aHL-------m 123 (281)
+|.-+..+.-...+++.++.+.+.|.+.|++..- +.+.+.- ......++++|+ ..++.+. +|+ -
T Consensus 4 klg~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~g~~~~~p 82 (340)
T 2zds_A 4 NFTLFTGQWADLPLEEVCRLARDFGYDGLELACW-GDHFEVDKALADPSYVDSRHQLLDKYGLKCWAISNHLVGQAVCDA 82 (340)
T ss_dssp CEEEESGGGTTSCHHHHHHHHHHHTCSEEEEESS-TTTCCHHHHHHCTTHHHHHHHHHHHTTCEEEEEEEHHHHHHHHCS
T ss_pred ceEEeecccCCCCHHHHHHHHHHcCCCEEEeccc-cccCCccccccCHHHHHHHHHHHHHcCCeEEEeeccccccccccc
Confidence 4555555544568899999999999999988642 2222210 011222333333 2455543 232 0
Q ss_pred -------------e-c--Chh-----------hHHHHHHHcCCCEEEEcccccc----------------------cccH
Q 023494 124 -------------I-V--EPE-----------QRVPDFIKAGADIVSVHCEQSS----------------------TIHL 154 (281)
Q Consensus 124 -------------v-~--dp~-----------~~i~~~~~aGAd~Itvh~Ea~~----------------------~~~i 154 (281)
+ . +|. +.++.+.+.|+..|.+|.-... .+.+
T Consensus 83 ~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 162 (340)
T 2zds_A 83 IIDERHEAILPARIWGDGDAEGVRQRAAAEIKDTARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRW 162 (340)
T ss_dssp CCSHHHHHHSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHH
Confidence 0 1 331 2355567889999999842100 0124
Q ss_pred HHHHHHHHHcCCcEEEEECCCC---CHHHHHHhhccCC
Q 023494 155 HRTLNQIKDLGAKAGVVLNPAT---SLSAIECVLDVVD 189 (281)
Q Consensus 155 ~~~l~~ik~~G~k~Glai~p~t---~ie~~~~~l~~vD 189 (281)
.++.+.++++|+++++--.+.+ ..+.+..+++.++
T Consensus 163 ~~l~~~a~~~Gv~l~lEn~~~~~~~~~~~~~~ll~~v~ 200 (340)
T 2zds_A 163 NPILDVFDAEGVRFAHEVHPSEIAYDYWTTHRALEAVG 200 (340)
T ss_dssp HHHHHHHHHHTCEEEEECCTTSSCCSHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCEEEEEcCCCcccCCHHHHHHHHHhcC
Confidence 4556667788999888766543 4556667777664
|
| >2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2 | Back alignment and structure |
|---|
Probab=86.38 E-value=1.5 Score=36.89 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCCh--hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGP--KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~--e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.++.++++++.. +.++.|++.++. +.+..+.++|+|.+.++..-. +.+.+.++.+++
T Consensus 49 g~~~i~~i~~~~-----~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~~--~~~~~~~~~~~~ 107 (220)
T 2fli_A 49 GADVVASMRKHS-----KLVFDCHLMVVDPERYVEAFAQAGADIMTIHTEST--RHIHGALQKIKA 107 (220)
T ss_dssp CHHHHHHHHTTC-----CSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGGC--SCHHHHHHHHHH
T ss_pred CHHHHHHHHHhC-----CCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCcc--ccHHHHHHHHHH
Confidence 355566665543 357889999983 468999999999999985543 567777777765
|
| >1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A | Back alignment and structure |
|---|
Probab=86.34 E-value=2.8 Score=36.53 Aligned_cols=135 Identities=9% Similarity=0.049 Sum_probs=66.6
Q ss_pred HHcCcCCCCCeeEEEEecCh--hh---HHHHHHHcCCCEEEEccccc---------------------ccccHHHHHHHH
Q 023494 108 DALRPVTDLPLDVHLMIVEP--EQ---RVPDFIKAGADIVSVHCEQS---------------------STIHLHRTLNQI 161 (281)
Q Consensus 108 ~~ir~~t~~~idaHLmv~dp--~~---~i~~~~~aGAd~Itvh~Ea~---------------------~~~~i~~~l~~i 161 (281)
+.+|+.-...+...++..|| .. .++.+.++|+|++.+..-.. ......+.++.+
T Consensus 10 ~~~~~~~~~~~~~~i~~g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~i 89 (262)
T 1rd5_A 10 AALMAKGKTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREV 89 (262)
T ss_dssp HHHHHTTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCceEEEEeeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33433323457777888888 33 35567789999999963210 011123566667
Q ss_pred HHc-CCcEEEEECCCCCHH--HHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh
Q 023494 162 KDL-GAKAGVVLNPATSLS--AIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237 (281)
Q Consensus 162 k~~-G~k~Glai~p~t~ie--~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~ 237 (281)
|+. ++.+.+....+ +.. .++...+ .+|.|.+. . . +. +.++++.+...++|....+.+.-.-..
T Consensus 90 r~~~~~Pv~~m~~~~-~~~~~~~~~a~~aGadgv~v~----d--~-~~-----~~~~~~~~~~~~~g~~~i~~~a~~t~~ 156 (262)
T 1rd5_A 90 TPELSCPVVLLSYYK-PIMFRSLAKMKEAGVHGLIVP----D--L-PY-----VAAHSLWSEAKNNNLELVLLTTPAIPE 156 (262)
T ss_dssp GGGCSSCEEEECCSH-HHHSCCTHHHHHTTCCEEECT----T--C-BT-----TTHHHHHHHHHHTTCEECEEECTTSCH
T ss_pred HhcCCCCEEEEecCc-HHHHHHHHHHHHcCCCEEEEc----C--C-Ch-----hhHHHHHHHHHHcCCceEEEECCCCCH
Confidence 665 45555432111 110 0111222 47776541 1 1 11 123444444444443333334433445
Q ss_pred hcHHHHHHcCCcEEEEcc
Q 023494 238 KNAYKVIEAGANALVAGS 255 (281)
Q Consensus 238 e~i~~~~~aGAD~~VvGS 255 (281)
+.+..+.+.+.+.+.+++
T Consensus 157 e~~~~~~~~~~g~v~~~s 174 (262)
T 1rd5_A 157 DRMKEITKASEGFVYLVS 174 (262)
T ss_dssp HHHHHHHHHCCSCEEEEC
T ss_pred HHHHHHHhcCCCeEEEec
Confidence 666777777776555554
|
| >2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A* | Back alignment and structure |
|---|
Probab=86.26 E-value=3.4 Score=37.34 Aligned_cols=95 Identities=17% Similarity=0.261 Sum_probs=54.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCccccc---c------cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN---I------TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn---~------~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|+....+..+.+.+.|+|+|-|... ..-|. + .-=..+|+.+++. +.|+-+ =+.+|. .++.+.++|
T Consensus 44 ~~~~a~~~a~~~v~~GAdiIDIGge--STrPga~~v~~~eE~~Rv~pvi~~l~~~-~vpiSI--DT~~~~-Va~aAl~aG 117 (294)
T 2y5s_A 44 ARDDALRRAERMIAEGADLLDIGGE--STRPGAPPVPLDEELARVIPLVEALRPL-NVPLSI--DTYKPA-VMRAALAAG 117 (294)
T ss_dssp CTTHHHHHHHHHHHTTCSEEEEESS--CCSTTCCCCCHHHHHHHHHHHHHHHGGG-CSCEEE--ECCCHH-HHHHHHHHT
T ss_pred CHHHHHHHHHHHHHCCCCEEEECCC--cCCCCCCCCCHHHHHHHHHHHHHHHhhC-CCeEEE--ECCCHH-HHHHHHHcC
Confidence 4444555566777889998644321 11232 1 1112344555543 556544 445655 677788899
Q ss_pred CCEEE-EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 139 ADIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 139 Ad~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
|++|- +..+. ..+.+..++++|+.+.+.-+
T Consensus 118 a~iINdVsg~~-----d~~m~~~~a~~~~~vVlmh~ 148 (294)
T 2y5s_A 118 ADLINDIWGFR-----QPGAIDAVRDGNSGLCAMHM 148 (294)
T ss_dssp CSEEEETTTTC-----STTHHHHHSSSSCEEEEECC
T ss_pred CCEEEECCCCC-----chHHHHHHHHhCCCEEEECC
Confidence 99884 33331 22567788889987776543
|
| >2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=86.17 E-value=2.6 Score=41.81 Aligned_cols=151 Identities=12% Similarity=0.117 Sum_probs=87.8
Q ss_pred CCCCeeEEEEec-ChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCC-cEEEE--ECCCCCHHHHHHhhccCC
Q 023494 114 TDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGA-KAGVV--LNPATSLSAIECVLDVVD 189 (281)
Q Consensus 114 t~~~idaHLmv~-dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~-k~Gla--i~p~t~ie~~~~~l~~vD 189 (281)
++..++.--++. |+ ..++...+.|+|+|.+..-. +.+++.++.+.+++.|. .+.+. |....-++.+.+++...|
T Consensus 162 Pg~~~~lp~ltekD~-~di~~~l~~g~d~v~~sfV~-~a~dv~~~~~~l~~~~~~~~~iiakIE~~eav~nldeIl~~~D 239 (587)
T 2e28_A 162 PGVKVNLPGITEKDR-ADILFGIRQGIDFIAASFVR-RASDVLEIRELLEAHDALHIQIIAKIENEEGVANIDEILEAAD 239 (587)
T ss_dssp TTSCCCCCSCCHHHH-HHHHHHHHHTCSEEEESSCC-SHHHHHHHHHHHHHTTCTTSEEEEEECSHHHHHTHHHHHHHSS
T ss_pred CCCcCCCCCCCcccH-HHHHHHHHcCCCEEEECCCC-CHHHHHHHHHHHHHcCCCCceEEEEECCHHHHHhHHHHHHhCC
Confidence 444455444443 33 34677889999999999765 36778888888888874 45444 543345577888888899
Q ss_pred EEEEEe----ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC----------CChhcHHHHHH---cCCcEEE
Q 023494 190 LVLIMS----VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG----------VGPKNAYKVIE---AGANALV 252 (281)
Q Consensus 190 ~Ilvms----V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG----------I~~e~i~~~~~---aGAD~~V 252 (281)
.|++-. ++-|+ ++...-.+++.+.++..| .++.++-= -+...+..+.. -|+|.+.
T Consensus 240 gImVargDLgvei~~------~~v~~~qk~ii~~~~~~g--kpvi~ATQmLeSMi~~p~PTRAE~sDvanav~dG~DavM 311 (587)
T 2e28_A 240 GLMVARGDLGVEIPA------EEVPLIQKLLIKKSNMLG--KPVITATQMLDSMQRNPRPTRAEASDVANAIFDGTDAVM 311 (587)
T ss_dssp EEEEEHHHHHHHSCG------GGHHHHHHHHHHHHHHHT--CCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHHTCSEEE
T ss_pred EEEEcCchhhhhcCH------HHHHHHHHHHHHHHHHcC--CCeEEechhhHhhccCCCccHHHHhccchhhhhCcceee
Confidence 998743 33232 333333344444444433 24433221 12223334444 4999998
Q ss_pred EcccccCCCCHHHHHHHHHHhc
Q 023494 253 AGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 253 vGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+...=-.-.-|.++++.|.+.+
T Consensus 312 LSgETA~G~yPveaV~~m~~I~ 333 (587)
T 2e28_A 312 LSGETAAGQYPVEAVKTMHQIA 333 (587)
T ss_dssp ESHHHHTCSCHHHHHHHHHHHH
T ss_pred ecccccCCCCHHHHHHHHHHHH
Confidence 7522222245777777776643
|
| >3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A | Back alignment and structure |
|---|
Probab=86.14 E-value=1.1 Score=39.12 Aligned_cols=73 Identities=19% Similarity=0.338 Sum_probs=51.9
Q ss_pred EEEecChhh-----HHHHHHHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEE
Q 023494 121 HLMIVEPEQ-----RVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIM 194 (281)
Q Consensus 121 HLmv~dp~~-----~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvm 194 (281)
|+..-||.+ .++.+.+.|+|.|.+..... ..++..++++.+|+.++.+ .+-|..+ ..+.+.+|.+++|
T Consensus 9 h~~~iDPdk~~~~~~~~~~~~~GtD~i~vGGs~gvt~~~~~~~v~~ik~~~~Pv--vlfp~~~----~~v~~gaD~~l~p 82 (228)
T 3vzx_A 9 HVFKLDPNKDLPDEQLEILCESGTDAVIIGGSDGVTEDNVLRMMSKVRRFLVPC--VLEVSAI----EAIVPGFDLYFIP 82 (228)
T ss_dssp EEEEECTTSCCCTTHHHHHHTSSCSEEEECCCSCCCHHHHHHHHHHHTTSSSCE--EEECSCG----GGCCSCCSEEEEE
T ss_pred EEEeECCCCCCCHHHHHHHHHcCCCEEEECCcCCCCHHHHHHHHHHhhccCCCE--EEeCCCH----HHccccCCEEEEe
Confidence 667778864 56777899999999998752 2346778888888754444 4455553 2456789999999
Q ss_pred eecCC
Q 023494 195 SVNPG 199 (281)
Q Consensus 195 sV~pG 199 (281)
++-.+
T Consensus 83 slln~ 87 (228)
T 3vzx_A 83 SVLNS 87 (228)
T ss_dssp EETTB
T ss_pred eecCC
Confidence 88654
|
| >2gl5_A Putative dehydratase protein; structural genomics, protein structure initiati nysgxrc; 1.60A {Salmonella typhimurium} SCOP: c.1.11.2 d.54.1.1 PDB: 4e6m_A* | Back alignment and structure |
|---|
Probab=86.13 E-value=2.7 Score=39.18 Aligned_cols=115 Identities=10% Similarity=0.056 Sum_probs=73.4
Q ss_pred ChhhHHHH---HHHcCCCEEEEccc-----cc------------------ccccHHHHHHHHHH-c--CCcEEEEECCCC
Q 023494 126 EPEQRVPD---FIKAGADIVSVHCE-----QS------------------STIHLHRTLNQIKD-L--GAKAGVVLNPAT 176 (281)
Q Consensus 126 dp~~~i~~---~~~aGAd~Itvh~E-----a~------------------~~~~i~~~l~~ik~-~--G~k~Glai~p~t 176 (281)
+|+.+.+. +.+.|.+.+=+|.. .. ..+...+.++++|+ . ++.+.+..|...
T Consensus 150 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~~~~~~~~~GG~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~ 229 (410)
T 2gl5_A 150 TPEEYAEAARAALDDGYDAIKVDPLEIDRNGDDCVFQNRNRNYSGLLLADQLKMGEARIAAMREAMGDDADIIVEIHSLL 229 (410)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECSSSBCTTSCBTTTSSCCGGGGSCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCS
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCcccccccccccccccCccchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCC
Confidence 67766543 56789999999852 10 01224467777777 3 466777778777
Q ss_pred CHHHHHHhhcc---CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEE
Q 023494 177 SLSAIECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANAL 251 (281)
Q Consensus 177 ~ie~~~~~l~~---vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~ 251 (281)
..+...++++. .+... ++ |++.+..++-.+++++.. +++|..|+.+. ++.+.++++.| +|++
T Consensus 230 ~~~~ai~~~~~l~~~~i~~---iE-----~P~~~~~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v 296 (410)
T 2gl5_A 230 GTNSAIQFAKAIEKYRIFL---YE-----EPIHPLNSDNMQKVSRST-----TIPIATGERSYTRWGYRELLEKQSIAVA 296 (410)
T ss_dssp CHHHHHHHHHHHGGGCEEE---EE-----CSSCSSCHHHHHHHHHHC-----SSCEEECTTCCTTHHHHHHHHTTCCSEE
T ss_pred CHHHHHHHHHHHHhcCCCe---EE-----CCCChhhHHHHHHHHhhC-----CCCEEecCCcCCHHHHHHHHHcCCCCEE
Confidence 77665555443 23222 22 445555566666666543 47999999986 78888888877 6877
Q ss_pred EE
Q 023494 252 VA 253 (281)
Q Consensus 252 Vv 253 (281)
.+
T Consensus 297 ~i 298 (410)
T 2gl5_A 297 QP 298 (410)
T ss_dssp CC
T ss_pred ec
Confidence 54
|
| >3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina} | Back alignment and structure |
|---|
Probab=86.02 E-value=1.6 Score=38.87 Aligned_cols=155 Identities=17% Similarity=0.220 Sum_probs=83.1
Q ss_pred HHcCcCCCCCeeEEEEecCh--h---hHHHHHHHcCCCEEEEccccc-c---cc-----------------cHHHHHHHH
Q 023494 108 DALRPVTDLPLDVHLMIVEP--E---QRVPDFIKAGADIVSVHCEQS-S---TI-----------------HLHRTLNQI 161 (281)
Q Consensus 108 ~~ir~~t~~~idaHLmv~dp--~---~~i~~~~~aGAd~Itvh~Ea~-~---~~-----------------~i~~~l~~i 161 (281)
+++|+.-.+.+..+++.-|| + ++++.+.++|||++.+...-+ + -. +..+.++.+
T Consensus 10 ~~~~~~~~~ali~yi~aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~i 89 (267)
T 3vnd_A 10 AALKAQDKGAFVPFVTIGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKV 89 (267)
T ss_dssp HHHHHHTCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 33443334668888888999 3 346667889999999983211 0 11 123566667
Q ss_pred HHc--CCcEEEEE--CC--CCCHHHHHH-hhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 162 KDL--GAKAGVVL--NP--ATSLSAIEC-VLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 162 k~~--G~k~Glai--~p--~t~ie~~~~-~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
|+. .+.+.+.. || .+.++.+.+ +.+ .+|.+++... ++ +...++++.+.++|.+.-..+..
T Consensus 90 r~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dl-------p~-----ee~~~~~~~~~~~gl~~i~liaP 157 (267)
T 3vnd_A 90 RAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADV-------PV-----EESAPFSKAAKAHGIAPIFIAPP 157 (267)
T ss_dssp HHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTS-------CG-----GGCHHHHHHHHHTTCEEECEECT
T ss_pred HhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCC-------CH-----hhHHHHHHHHHHcCCeEEEEECC
Confidence 765 34555542 32 122333222 222 3787766211 11 22445555555555543334555
Q ss_pred CCChhcHHHHHHcCCcEEEEc--ccccCC-----CCHHHHHHHHHHhc
Q 023494 234 GVGPKNAYKVIEAGANALVAG--SAVFGA-----KDYAEAIKGIKTSK 274 (281)
Q Consensus 234 GI~~e~i~~~~~aGAD~~VvG--SaIf~a-----~dp~~~~~~l~~~~ 274 (281)
.-+.+.++.+.+.+.+.+-.- ...++. ++..+.++++|+..
T Consensus 158 ~t~~eri~~i~~~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~ 205 (267)
T 3vnd_A 158 NADADTLKMVSEQGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFN 205 (267)
T ss_dssp TCCHHHHHHHHHHCCSCEEESCCCCCC--------CHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHhCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhc
Confidence 556788888888865554442 224443 23456677777654
|
| >3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum} | Back alignment and structure |
|---|
Probab=85.98 E-value=3 Score=39.38 Aligned_cols=117 Identities=20% Similarity=0.182 Sum_probs=66.2
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc--
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS-- 150 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~-- 150 (281)
.+.++.+.++|+|.|-+|...|+ | ..-++.++++|+..+.++.+. -+.+ .+..+.+.++|||.|.++.+..+
T Consensus 146 ~e~~~~lveaGvdvIvldta~G~--~--~~~~e~I~~ik~~~~i~Vi~g-~V~t-~e~A~~a~~aGAD~I~vG~g~Gs~~ 219 (400)
T 3ffs_A 146 IERAKLLVEAGVDVIVLDSAHGH--S--LNIIRTLKEIKSKMNIDVIVG-NVVT-EEATKELIENGADGIKVGIGPGSIC 219 (400)
T ss_dssp CHHHHHHHHHTCSEEEECCSCCS--B--HHHHHHHHHHHTTCCCEEEEE-EECS-HHHHHHHHHTTCSEEEECC------
T ss_pred HHHHHHHHHcCCCEEEEeCCCCC--c--ccHHHHHHHHHhcCCCeEEEe-ecCC-HHHHHHHHHcCCCEEEEeCCCCcCc
Confidence 57789999999999877755442 1 011467788877556666552 2333 33667788999999999543210
Q ss_pred ---------cccHHHHHHHH----HHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeec
Q 023494 151 ---------TIHLHRTLNQI----KDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVN 197 (281)
Q Consensus 151 ---------~~~i~~~l~~i----k~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~ 197 (281)
..++ ..+..+ ++.++.+..+ .-=...+.+.+.+. .+|.|.+.+..
T Consensus 220 ~tr~~~g~g~p~~-~al~~v~~~~~~~~IPVIA~-GGI~~~~di~kalalGAd~V~vGt~f 278 (400)
T 3ffs_A 220 TTRIVAGVGVPQI-TAIEKCSSVASKFGIPIIAD-GGIRYSGDIGKALAVGASSVMIGSIL 278 (400)
T ss_dssp ---CCSCBCCCHH-HHHHHHHHHHTTTTCCEEEE-SCCCSHHHHHHHHTTTCSEEEECGGG
T ss_pred ccccccccchhHH-HHHHHHHHHHHhcCCCEEec-CCCCCHHHHHHHHHcCCCEEEEChHH
Confidence 1122 223333 3345444332 11123444555544 58999876543
|
| >3ozy_A Putative mandelate racemase; beta-alpha barrel, enolase superfamily member, M-xylarate, U function; HET: DXL; 1.30A {Bordetella bronchiseptica} PDB: 3ozm_A* 3h12_A 3op2_A* | Back alignment and structure |
|---|
Probab=85.83 E-value=4 Score=37.93 Aligned_cols=127 Identities=11% Similarity=0.101 Sum_probs=82.5
Q ss_pred CCeeEEEE--ecChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc
Q 023494 116 LPLDVHLM--IVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV 187 (281)
Q Consensus 116 ~~idaHLm--v~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~ 187 (281)
+++.+.+. ..+|+.+.+ .+.+.|.+.+=++.-. +.+.-.+.++++|+. ++.+.+..|.....+....+++.
T Consensus 139 v~~y~~~~~~~~~~e~~~~~a~~~~~~G~~~iKiKvG~-~~~~d~~~v~avR~a~g~d~~l~vDan~~~~~~~A~~~~~~ 217 (389)
T 3ozy_A 139 VRAYASSIYWDLTPDQAADELAGWVEQGFTAAKLKVGR-APRKDAANLRAMRQRVGADVEILVDANQSLGRHDALAMLRI 217 (389)
T ss_dssp EEEEEEEECSSCCHHHHHHHHHHHHHTTCSEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHH
T ss_pred eeeEEecCCCCCCHHHHHHHHHHHHHCCCCEEeeccCC-CHHHHHHHHHHHHHHcCCCceEEEECCCCcCHHHHHHHHHH
Confidence 55666552 467776644 4567899999998643 123344567777763 56778888888887765555432
Q ss_pred -----CCEEEEEeecCCCCCCccchhHHHHHHHHH-HHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEccccc
Q 023494 188 -----VDLVLIMSVNPGFGGQSFIESQVKKISDLR-RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVF 258 (281)
Q Consensus 188 -----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr-~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf 258 (281)
+++| .|++.+..++-+++++ + ..+++|..|+.+. ++.+..+++.| +|++.+--.-.
T Consensus 218 l~~~~i~~i----------EqP~~~~d~~~~~~l~~~-----~~~iPIa~dE~i~~~~~~~~~i~~~~~d~v~ik~~~~ 281 (389)
T 3ozy_A 218 LDEAGCYWF----------EEPLSIDDIEGHRILRAQ-----GTPVRIATGENLYTRNAFNDYIRNDAIDVLQADASRA 281 (389)
T ss_dssp HHHTTCSEE----------ESCSCTTCHHHHHHHHTT-----CCSSEEEECTTCCHHHHHHHHHHTTCCSEECCCTTTS
T ss_pred HHhcCCCEE----------ECCCCcccHHHHHHHHhc-----CCCCCEEeCCCCCCHHHHHHHHHcCCCCEEEeCcccc
Confidence 4444 2556555565566655 3 2358999999998 67888888765 78887654433
|
| >3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=85.73 E-value=17 Score=32.83 Aligned_cols=172 Identities=16% Similarity=0.165 Sum_probs=97.6
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 41 ~iD~~~l~~lv~~li~~Gv~Gi~v---~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~ 117 (315)
T 3na8_A 41 GLDLPALGRSIERLIDGGVHAIAP---LGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAES 117 (315)
T ss_dssp SBCHHHHHHHHHHHHHTTCSEEEC---SSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHh
Confidence 467778889999999999997632 233222233333 344444432 2478999877666654 4556778
Q ss_pred cCCCEEEEcccc---cccccHHHHHHHHHH-cCCcEEEEECC-----CCCHHHHHHh-hccCCEEEEEeecCCCCCCccc
Q 023494 137 AGADIVSVHCEQ---SSTIHLHRTLNQIKD-LGAKAGVVLNP-----ATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 137 aGAd~Itvh~Ea---~~~~~i~~~l~~ik~-~G~k~Glai~p-----~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+|||.+.+..-. .+.+.+.+..+.+-+ .++.+.+=-+| +-+.+.+.++ .+...++.+= .-
T Consensus 118 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L~a~~pnIvgiK----------ds 187 (315)
T 3na8_A 118 LGAEAVMVLPISYWKLNEAEVFQHYRAVGEAIGVPVMLYNNPGTSGIDMSVELILRIVREVDNVTMVK----------ES 187 (315)
T ss_dssp TTCSEEEECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHHHSTTEEEEE----------EC
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCcEEEEeCcchhCcCCCHHHHHHHHhcCCCEEEEE----------CC
Confidence 999999887321 112334444444433 46666665444 2355777777 4434444321 11
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
...+.++.++++..+. ++.+- .|-. +.+-....+|++.+|.|.+
T Consensus 188 sgd~~~~~~~~~~~~~---~f~v~--~G~D-~~~l~~l~~G~~G~is~~a 231 (315)
T 3na8_A 188 TGDIQRMHKLRLLGEG---RVPFY--NGCN-PLALEAFVAGAKGWCSAAP 231 (315)
T ss_dssp SSCHHHHHHHHHHTTT---CSCEE--ECCG-GGHHHHHHHTCSEEEESGG
T ss_pred CCCHHHHHHHHHHcCC---CEEEE--eCch-HHHHHHHHCCCCEEEechh
Confidence 1124555555554432 34442 2333 2455667889999999965
|
| >3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=85.69 E-value=1.4 Score=36.85 Aligned_cols=89 Identities=20% Similarity=0.166 Sum_probs=55.9
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEee-eCc-ccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVM-DGR-FVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDIm-DG~-fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
+.+..+.++.+.+.|+|++.++.. +|. |. ..+.+.++++|+. ++.|+.+.-=+ +|. -+..+.++|||++.+.
T Consensus 113 ~~t~~~~~~~~~~~g~d~i~v~~g~~g~~~~---~~~~~~i~~l~~~~~~~~i~~~gGI-~~~-~~~~~~~~Gad~vvvG 187 (211)
T 3f4w_A 113 VDDLPARVRLLEEAGADMLAVHTGTDQQAAG---RKPIDDLITMLKVRRKARIAVAGGI-SSQ-TVKDYALLGPDVVIVG 187 (211)
T ss_dssp CSSHHHHHHHHHHHTCCEEEEECCHHHHHTT---CCSHHHHHHHHHHCSSCEEEEESSC-CTT-THHHHHTTCCSEEEEC
T ss_pred CCCHHHHHHHHHHcCCCEEEEcCCCcccccC---CCCHHHHHHHHHHcCCCcEEEECCC-CHH-HHHHHHHcCCCEEEEC
Confidence 446667788888899999887621 121 11 1256788888876 46666554434 343 5677889999999998
Q ss_pred ccccccccHHHHHHHHH
Q 023494 146 CEQSSTIHLHRTLNQIK 162 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik 162 (281)
-.-...+++.+.++.++
T Consensus 188 sai~~~~d~~~~~~~l~ 204 (211)
T 3f4w_A 188 SAITHAADPAGEARKIS 204 (211)
T ss_dssp HHHHTCSSHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHH
Confidence 32111234555555554
|
| >3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A* | Back alignment and structure |
|---|
Probab=85.68 E-value=3.5 Score=36.64 Aligned_cols=119 Identities=11% Similarity=0.094 Sum_probs=69.8
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccH-HHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC---
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHL-HRTLNQIKDL-GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG--- 199 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i-~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG--- 199 (281)
||.+....+.++| |+||+|.-. +..|+ .+-+..+++. ..+.-+-.+|.... +.-.++ .++.|.+..-.+.
T Consensus 26 dpv~aA~~ae~aG-dgITvHlRe-DrRHI~d~Dv~~L~~~~~~~lNlE~a~t~em--i~ial~~kP~~vtLVPEkreE~T 101 (260)
T 3o6c_A 26 DLLEAAFIVARHG-DQITLHVRE-DRRHAQDFDLENIIKFCKSPVNLECALNDEI--LNLALKLKPHRVTLVPEKREELT 101 (260)
T ss_dssp CHHHHHHHHHHHS-SEEEEECCT-TCSSSCHHHHHHHHHHCSSCEEEEECSCHHH--HHHHHHHCCSEEEECCCSGGGBC
T ss_pred CHHHHHHHHHHhC-CeEEEeeCC-CcccCCHHHHHHHHHHcCCCEEeecCCCHHH--HHHHHHcCCCEEEECCCCCCccC
Confidence 4555556677899 999999763 23333 2344455543 56777777764322 322233 4788877532221
Q ss_pred -CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEE
Q 023494 200 -FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 200 -~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~Vv 253 (281)
-+|-.+ -.++|+.+.+.+.+.|..+-+=+|. .++.+....+.|||.+=+
T Consensus 102 TegGldv---~~~~L~~~i~~L~~~GIrVSLFIDp--d~~qi~aA~~~GAd~IEL 151 (260)
T 3o6c_A 102 TEGGLCL---NHAKLKQSIEKLQNANIEVSLFINP--SLEDIEKSKILKAQFIEL 151 (260)
T ss_dssp TTSSBCT---TCTTHHHHHHHHHHTTCEEEEEECS--CHHHHHHHHHTTCSEEEE
T ss_pred CCCChhh---CHHHHHHHHHHHHHCCCEEEEEeCC--CHHHHHHHHHhCCCEEEE
Confidence 133223 3344555555555555434455663 466899999999999887
|
| >2qdd_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI, protein structu initiative, nysgrc; 2.30A {Roseovarius nubinhibens} PDB: 3fvd_B | Back alignment and structure |
|---|
Probab=85.66 E-value=5.1 Score=36.85 Aligned_cols=119 Identities=15% Similarity=0.077 Sum_probs=76.7
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecC
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP 198 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p 198 (281)
.+|+.+.+ .+.+.|.+.+=+|.-..+.....+.++++|+. ++.+.+..|.....+...++++..+ .-+ -+
T Consensus 144 ~~~e~~~~~a~~~~~~Gf~~iKik~g~~~~~~~~e~v~avr~a~g~~~~l~vDan~~~~~~~a~~~~~~l~-~~i-~i-- 219 (378)
T 2qdd_A 144 GTPDQMLGLIAEAAAQGYRTHSAKIGGSDPAQDIARIEAISAGLPDGHRVTFDVNRAWTPAIAVEVLNSVR-ARD-WI-- 219 (378)
T ss_dssp CCHHHHHHHHHHHHHHTCCEEEEECCSSCHHHHHHHHHHHHHSCCTTCEEEEECTTCCCHHHHHHHHTSCC-CCC-EE--
T ss_pred CCHHHHHHHHHHHHHHhhhheeecCCCCChHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHhC-CCc-EE--
Confidence 57776644 35678999999986531123345778888873 4667778887777777777766554 212 22
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAV 257 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaI 257 (281)
.|++. .++-++++++. .+++|..|+.+. ++.+..+++.| +|++.+--.-
T Consensus 220 ---EqP~~--d~~~~~~l~~~-----~~iPI~~dE~~~~~~~~~~~i~~~~~d~v~ik~~~ 270 (378)
T 2qdd_A 220 ---EQPCQ--TLDQCAHVARR-----VANPIMLDECLHEFSDHLAAWSRGACEGVKIKPNR 270 (378)
T ss_dssp ---ECCSS--SHHHHHHHHTT-----CCSCEEECTTCCSHHHHHHHHHHTCCSEEEECHHH
T ss_pred ---EcCCC--CHHHHHHHHHh-----CCCCEEECCCcCCHHHHHHHHHhCCCCEEEecccc
Confidence 24443 34444444432 357999999986 77888877655 8988875443
|
| >1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* | Back alignment and structure |
|---|
Probab=85.63 E-value=19 Score=32.00 Aligned_cols=167 Identities=13% Similarity=0.063 Sum_probs=86.0
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcCCCCCeeEEEEecChhhH---HHHHHHcC
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTDLPLDVHLMIVEPEQR---VPDFIKAG 138 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~t~~~idaHLmv~dp~~~---i~~~~~aG 138 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+..+- +.++.-.++..+- .+.+.++|
T Consensus 16 ~iD~~~l~~lv~~li~~Gv~gl~~---~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg~~~t~~ai~la~~A~~~G 91 (293)
T 1w3i_A 16 RIDKEKLKIHAENLIRKGIDKLFV---NGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSKDFD 91 (293)
T ss_dssp SBCHHHHHHHHHHHHHTTCCEEEE---SSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECCCSCHHHHHHHHHHGGGSC
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHcCC-EEEecCCCCHHHHHHHHHHHHhcC
Confidence 467778889999999999987633 243222233333 334444444333 6666655565543 44456678
Q ss_pred CCEEEEcccc----cccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccchh
Q 023494 139 ADIVSVHCEQ----SSTIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 139 Ad~Itvh~Ea----~~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
||.+.+..=. .+.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.+ .+. ++.+ |.-..
T Consensus 92 adavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~-~pn--Ivgi----------Kds~g 158 (293)
T 1w3i_A 92 IVGIASYAPYYYPRMSEKHLVKYFKTLCEVSPHPVYLYNYPTATGKDIDAKVAKE-IGC--FTGV----------KDTIE 158 (293)
T ss_dssp CSEEEEECCCSCSSCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHH-HCC--EEEE----------EECCS
T ss_pred CCEEEEcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEEEECchhhCcCCCHHHHHh-cCC--EEEE----------EeCCC
Confidence 8887765211 112223333333332 355555544442 23344444 221 2211 11111
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++ .+ .++.+ ..| -. +.+-.....|++.+|.|.+
T Consensus 159 d~~~~~~~~~-~~---~~f~v-~~G-~d-~~~~~~l~~G~~G~is~~a 199 (293)
T 1w3i_A 159 NIIHTLDYKR-LN---PNMLV-YSG-SD-MLIATVASTGLDGNVAAGS 199 (293)
T ss_dssp CHHHHHHHHH-HC---TTSEE-EEC-CS-TTHHHHHHTTCCEEECGGG
T ss_pred CHHHHHHHHh-cC---CCEEE-EEc-cH-HHHHHHHHcCCCEEEeCHH
Confidence 2445555555 32 24544 333 33 3455667899999999965
|
| >4dwd_A Mandelate racemase/muconate lactonizing enzyme, C domain protein; structural genomics, EFI, enzyme function initiative, metal protein; HET: MSE; 1.50A {Paracoccus denitrificans} PDB: 3n4e_A* | Back alignment and structure |
|---|
Probab=85.60 E-value=5.8 Score=36.99 Aligned_cols=124 Identities=10% Similarity=0.058 Sum_probs=81.2
Q ss_pred CCeeEEE---EecChhhHHH----HHHHcCCCEEEEccccc------ccccHHHHHHHHHHc---CCcEEEEECCCCCHH
Q 023494 116 LPLDVHL---MIVEPEQRVP----DFIKAGADIVSVHCEQS------STIHLHRTLNQIKDL---GAKAGVVLNPATSLS 179 (281)
Q Consensus 116 ~~idaHL---mv~dp~~~i~----~~~~aGAd~Itvh~Ea~------~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie 179 (281)
+++.+.+ ...+|+.+.+ .+.+.|...+=+..-.. ..+.-.+.++++|+. ++.+.+..|.....+
T Consensus 126 v~~y~s~~g~~~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~~~~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~ 205 (393)
T 4dwd_A 126 LPCYSSIGGNAARSVDEVVREVARRVEAEQPAAVKIRWDGDRTRCDVDIPGDIAKARAVRELLGPDAVIGFDANNGYSVG 205 (393)
T ss_dssp EEEEEEECCCSSSCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCCSCCHHHHHHHHHHHHHHHCTTCCEEEECTTCCCHH
T ss_pred eeeEEecCccCCCCHHHHHHHHHHHHHHcCCCEEEEccCCCCcccccCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHH
Confidence 5566653 1356776644 44567999998876320 112234566777764 567888888888887
Q ss_pred HHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 180 AIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 180 ~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
....+++. +++| .|++.+..++-++++++.. +++|..|+.+. .+.+..+++.|+|++.+
T Consensus 206 ~A~~~~~~L~~~~i~~i----------EqP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~d~v~~ 270 (393)
T 4dwd_A 206 GAIRVGRALEDLGYSWF----------EEPVQHYHVGAMGEVAQRL-----DITVSAGEQTYTLQALKDLILSGVRMVQP 270 (393)
T ss_dssp HHHHHHHHHHHTTCSEE----------ECCSCTTCHHHHHHHHHHC-----SSEEEBCTTCCSHHHHHHHHHHTCCEECC
T ss_pred HHHHHHHHHHhhCCCEE----------ECCCCcccHHHHHHHHhhC-----CCCEEecCCcCCHHHHHHHHHcCCCEEEe
Confidence 65555432 4444 2556555566666666653 47999999988 77888888888998866
Q ss_pred c
Q 023494 254 G 254 (281)
Q Consensus 254 G 254 (281)
-
T Consensus 271 k 271 (393)
T 4dwd_A 271 D 271 (393)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A* | Back alignment and structure |
|---|
Probab=85.56 E-value=2.2 Score=39.79 Aligned_cols=122 Identities=13% Similarity=0.057 Sum_probs=70.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccc-----cc---------------ccCCHHHHHHcCcCCC-CCeeEEEEecC---
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFV-----PN---------------ITIGPLVVDALRPVTD-LPLDVHLMIVE--- 126 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fv-----pn---------------~~~G~~~I~~ir~~t~-~~idaHLmv~d--- 126 (281)
.+.++.+.+.++|.|.|+|..-.|-.+ |+ ..|-.++++++|+..+ .++-+.|-..+
T Consensus 167 ~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~ 246 (377)
T 2r14_A 167 DYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELF 246 (377)
T ss_dssp HHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCT
T ss_pred HHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccC
Confidence 444555667789999998875443111 21 1234677888888643 27777653321
Q ss_pred ----------hhhHHHHHHHcCCCEEEEccccc---ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--CCEE
Q 023494 127 ----------PEQRVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLV 191 (281)
Q Consensus 127 ----------p~~~i~~~~~aGAd~Itvh~Ea~---~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--vD~I 191 (281)
..++++.+.++|+|++++|.-.. ......+.++.+|+.=-...++. -.-..+..++++.. +|.|
T Consensus 247 ~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~iPvi~~-Ggi~~~~a~~~l~~g~aD~V 325 (377)
T 2r14_A 247 GLTDDEPEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKGGLIYC-GNYDAGRAQARLDDNTADAV 325 (377)
T ss_dssp TCCCSCHHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCSEEEEE-SSCCHHHHHHHHHTTSCSEE
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCCCEEEE-CCCCHHHHHHHHHCCCceEE
Confidence 12345667789999999996310 00001245566665422233333 33347777887764 8999
Q ss_pred EE
Q 023494 192 LI 193 (281)
Q Consensus 192 lv 193 (281)
.+
T Consensus 326 ~i 327 (377)
T 2r14_A 326 AF 327 (377)
T ss_dssp EE
T ss_pred ee
Confidence 76
|
| >2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A* | Back alignment and structure |
|---|
Probab=85.44 E-value=2.5 Score=39.04 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=45.0
Q ss_pred HHHHHhhc---cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 179 SAIECVLD---VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 179 e~~~~~l~---~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
+.+..+++ .+|.+.+- ... | ..+..++.|+++|+..+ +.++.+-+..+.+.+..+.++|||.+++|
T Consensus 121 ~~~~~l~~~~~g~~~i~i~-~~~---g--~~~~~~~~i~~lr~~~~----~~~vi~g~v~t~e~A~~a~~aGaD~I~v~ 189 (351)
T 2c6q_A 121 EQLEQILEAIPQVKYICLD-VAN---G--YSEHFVEFVKDVRKRFP----QHTIMAGNVVTGEMVEELILSGADIIKVG 189 (351)
T ss_dssp HHHHHHHHHCTTCCEEEEE-CSC---T--TBHHHHHHHHHHHHHCT----TSEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHhccCCCCEEEEE-ecC---C--CcHHHHHHHHHHHHhcC----CCeEEEEeCCCHHHHHHHHHhCCCEEEEC
Confidence 34444444 47766542 222 2 23456788888887653 36777777788999999999999999885
|
| >3tj4_A Mandelate racemase; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.50A {Agrobacterium tumefaciens} PDB: 4h19_A* | Back alignment and structure |
|---|
Probab=85.39 E-value=6.9 Score=36.04 Aligned_cols=118 Identities=11% Similarity=0.051 Sum_probs=74.3
Q ss_pred ChhhHHH---HHHHc-CCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecC
Q 023494 126 EPEQRVP---DFIKA-GADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP 198 (281)
Q Consensus 126 dp~~~i~---~~~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p 198 (281)
+|+..++ .+.+. |...+=+..-....+.-.+.++++|+. +..+.+..|.....+....+++.++-.-+.-+
T Consensus 151 ~~~~~~~~a~~~~~~~G~~~~K~Kvg~~~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~~~~i~~i-- 228 (372)
T 3tj4_A 151 TLEDLLAGSARAVEEDGFTRLKIKVGHDDPNIDIARLTAVRERVDSAVRIAIDGNGKWDLPTCQRFCAAAKDLDIYWF-- 228 (372)
T ss_dssp CHHHHHHHHHHHHHTTCCCEEEEECCCSSHHHHHHHHHHHHHHSCTTCEEEEECTTCCCHHHHHHHHHHTTTSCEEEE--
T ss_pred CHHHHHHHHHHHHHccCCCEEEEcCCCCCHHHHHHHHHHHHHHcCCCCcEEeeCCCCCCHHHHHHHHHHHhhcCCCEE--
Confidence 6766654 45567 999998886421122234567777763 56777888888888766665543221111111
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.|++.+..++-++++++.. +++|..|+.+. .+.+..+++.| +|++.+
T Consensus 229 ---EqP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~~ 277 (372)
T 3tj4_A 229 ---EEPLWYDDVTSHARLARNT-----SIPIALGEQLYTVDAFRSFIDAGAVAYVQP 277 (372)
T ss_dssp ---ESCSCTTCHHHHHHHHHHC-----SSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred ---ECCCCchhHHHHHHHHhhc-----CCCEEeCCCccCHHHHHHHHHcCCCCEEEe
Confidence 2556555566666666543 47999999988 67888888776 677654
|
| >3bjs_A Mandelate racemase/muconate lactonizing enzyme; enolase, structural genomics, PSI-2, protein struc initiative; 2.70A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=85.34 E-value=2.2 Score=40.26 Aligned_cols=114 Identities=11% Similarity=0.150 Sum_probs=74.6
Q ss_pred cCh-hhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEE
Q 023494 125 VEP-EQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVL 192 (281)
Q Consensus 125 ~dp-~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Il 192 (281)
.+| +.+.+ .+.+.|.+.+=+|.-. +.....+.++++|+. ++.+.+..|.....+....+++. +++|
T Consensus 183 ~~~~e~~~~~a~~~~~~Gf~~vKik~g~-~~~~d~e~v~avR~avG~d~~l~vDan~~~~~~eai~~~~~L~~~~i~~i- 260 (428)
T 3bjs_A 183 YQPKESLAEEAQEYIARGYKALKLRIGD-AARVDIERVRHVRKVLGDEVDILTDANTAYTMADARRVLPVLAEIQAGWL- 260 (428)
T ss_dssp SCCHHHHHHHHHHHHHHTCSEEEEECCS-CHHHHHHHHHHHHHHHCTTSEEEEECTTCCCHHHHHHHHHHHHHTTCSCE-
T ss_pred CChHHHHHHHHHHHHHCCCCEEEECCCC-CHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHhcCCCEE-
Confidence 577 76654 3467899999998653 223345677788874 46677788877777665555432 4443
Q ss_pred EEeecCCCCCCccchhHHHHHHHHHHHhhhcCCC-CeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVN-PWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 193 vmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~-~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++-.+++++. .+ ++|..|+.+. ++.+..+++.| +|++.+-
T Consensus 261 ---------EqP~~~~d~~~~~~l~~~-----~~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~ik 311 (428)
T 3bjs_A 261 ---------EEPFACNDFASYREVAKI-----TPLVPIAAGENHYTRFEFGQMLDAGAVQVWQPD 311 (428)
T ss_dssp ---------ECCSCTTCHHHHHHHTTT-----CSSSCEEECTTCCSHHHHHHHHTTCCEEEECCB
T ss_pred ---------ECCCCccCHHHHHHHHHh-----CCCCcEEcCCCcCCHHHHHHHHHhCCCCEEEeC
Confidence 255555555555555432 34 7899999986 78888888777 5666543
|
| >3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica} | Back alignment and structure |
|---|
Probab=85.26 E-value=3.1 Score=36.12 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=59.2
Q ss_pred ccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH
Q 023494 100 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (281)
Q Consensus 100 ~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i 178 (281)
.+|.++.++.+|+. ++.++-. |.-..|..+.+.+...|++.++.+.... -.+.++.+++.|+++.+.. .+ ..
T Consensus 149 ~SF~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~v~~~~~~G~~v~~WT-vn-~~ 221 (252)
T 3qvq_A 149 SSFNYFALVSAKALWPEIARGY-NVSAIPSAWQERLEHLDCAGLHIHQSFF----DVQQVSDIKAAGYKVLAFT-IN-DE 221 (252)
T ss_dssp EESCHHHHHHHHHHCTTSCEEE-ECSSCCTTHHHHHHHHTCSEEEEEGGGC----CHHHHHHHHHTTCEEEEEC-CC-CH
T ss_pred EeCCHHHHHHHHHHCCCCcEEE-EEecCchhHHHHHHHcCCeEEecchhhC----CHHHHHHHHHCCCEEEEEc-CC-CH
Confidence 37899999999876 5555432 3323345566667788999999887642 2468899999999998863 23 44
Q ss_pred HHHHHhhc-cCCEEE
Q 023494 179 SAIECVLD-VVDLVL 192 (281)
Q Consensus 179 e~~~~~l~-~vD~Il 192 (281)
+.++.++. .+|.|.
T Consensus 222 ~~~~~l~~~GVdgIi 236 (252)
T 3qvq_A 222 SLALKLYNQGLDAVF 236 (252)
T ss_dssp HHHHHHHHTTCCEEE
T ss_pred HHHHHHHHcCCCEEE
Confidence 55666665 588774
|
| >1sjd_A N-acylamino acid racemase; lyase, isomerase; HET: NPG; 1.87A {Amycolatopsis SP} SCOP: c.1.11.2 d.54.1.1 PDB: 1sja_A* 1sjb_A* 1sjc_A* | Back alignment and structure |
|---|
Probab=85.23 E-value=2.3 Score=38.97 Aligned_cols=111 Identities=17% Similarity=0.167 Sum_probs=71.4
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEEE
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVLI 193 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilv 193 (281)
.+|+.+.+ .+.+.|.+.+-+|.. +..+ .+.++++|+. ++.+.+..|.....+. .++++. +++|
T Consensus 140 ~~~~~~~~~a~~~~~~Gf~~vKik~~--~~~~-~e~v~avr~~~g~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i-- 213 (368)
T 1sjd_A 140 DTIPQLLDVVGGYLDEGYVRIKLKIE--PGWD-VEPVRAVRERFGDDVLLQVDANTAYTLGD-APQLARLDPFGLLLI-- 213 (368)
T ss_dssp SCHHHHHHHHHHHHHHTCSEEEEECB--TTBS-HHHHHHHHHHHCTTSEEEEECTTCCCGGG-HHHHHTTGGGCCSEE--
T ss_pred CCHHHHHHHHHHHHHhCccEEEEecC--chhH-HHHHHHHHHhcCCCceEEEeccCCCCHHH-HHHHHHHHhcCCCeE--
Confidence 36766654 356789999999974 2222 3566777753 4667777777666655 555443 3433
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++..+++++. .+++|..|+.++ ++.+..+++.| +|++.+=
T Consensus 214 --------E~P~~~~~~~~~~~l~~~-----~~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 263 (368)
T 1sjd_A 214 --------EQPLEEEDVLGHAELARR-----IQTPICLDESIVSARAAADAIKLGAVQIVNIK 263 (368)
T ss_dssp --------ECCSCTTCHHHHHHHHTT-----CSSCEEESTTCCSHHHHHHHHHTTCCSEEEEC
T ss_pred --------eCCCChhhHHHHHHHHHh-----CCCCEEECCCcCCHHHHHHHHHcCCCCEEEec
Confidence 255555555555555543 357899999986 77888888776 6888763
|
| >3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0 | Back alignment and structure |
|---|
Probab=85.21 E-value=1.9 Score=40.03 Aligned_cols=114 Identities=21% Similarity=0.179 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccc-----c--cc---c----------CCHHHHHHcCcCCC-CCeeEEEEecC------
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFV-----P--NI---T----------IGPLVVDALRPVTD-LPLDVHLMIVE------ 126 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fv-----p--n~---~----------~G~~~I~~ir~~t~-~~idaHLmv~d------ 126 (281)
++.+.+.++|.|.|+|-.--|-.+ | |. . |-.++++++|+..+ .++-+.|=..+
T Consensus 165 ~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~ 244 (361)
T 3gka_A 165 RGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMG 244 (361)
T ss_dssp HHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCC
T ss_pred HHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCC
Confidence 444567789999988865433111 2 11 2 33788999988643 26766554332
Q ss_pred ---h----hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc--CCEEEE
Q 023494 127 ---P----EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV--VDLVLI 193 (281)
Q Consensus 127 ---p----~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~--vD~Ilv 193 (281)
+ ..+++.+.++|+|++++|.-.. .. ..++.+|+. ++.+ ++.. ....+..++++.. +|.|.+
T Consensus 245 ~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~-~~---~~~~~ik~~~~iPv-i~~G-git~e~a~~~l~~G~aD~V~i 315 (361)
T 3gka_A 245 DSDPAATFGHVARELGRRRIAFLFARESFG-GD---AIGQQLKAAFGGPF-IVNE-NFTLDSAQAALDAGQADAVAW 315 (361)
T ss_dssp CSCHHHHHHHHHHHHHHTTCSEEEEECCCS-TT---CCHHHHHHHHCSCE-EEES-SCCHHHHHHHHHTTSCSEEEE
T ss_pred CCCcHHHHHHHHHHHHHcCCCEEEECCCCC-CH---HHHHHHHHHcCCCE-EEeC-CCCHHHHHHHHHcCCccEEEE
Confidence 1 1245667789999999996431 11 234555543 4332 2322 3356777777764 899976
|
| >1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=85.15 E-value=20 Score=31.87 Aligned_cols=172 Identities=19% Similarity=0.247 Sum_probs=100.0
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc------cCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI------TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~------~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|.....+.++.+.++|++.+-+ +.|-|.. .+|.+..+.+++. .++++... +.||. -++.+.+.
T Consensus 50 ~~e~a~~~a~~~k~~ga~~~k~----~~~kprts~~~f~g~g~~gl~~l~~~~~~~Gl~~~te--~~d~~-~~~~l~~~- 121 (276)
T 1vs1_A 50 SWEQVREAALAVKEAGAHMLRG----GAFKPRTSPYSFQGLGLEGLKLLRRAGDEAGLPVVTE--VLDPR-HVETVSRY- 121 (276)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEC----BSSCCCSSTTSCCCCTHHHHHHHHHHHHHHTCCEEEE--CCCGG-GHHHHHHH-
T ss_pred CHHHHHHHHHHHHHhCCCEEEe----EEEeCCCChhhhcCCCHHHHHHHHHHHHHcCCcEEEe--cCCHH-HHHHHHHh-
Confidence 4445556667777999987544 3444432 2255556655543 56777663 34544 34555666
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc------cCCEEEEE-ee--cCCCCCCccchhH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD------VVDLVLIM-SV--NPGFGGQSFIESQ 209 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~------~vD~Ilvm-sV--~pG~~GQ~f~~~~ 209 (281)
+|++-+.... ..+ ..+++++-+.|+-+++.....-.++++..-++ .-+++++. ++ .|++.-.. -.
T Consensus 122 vd~~kIgs~~--~~n-~~ll~~~a~~~kPV~lk~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~Rg~~~yp~y~~~~---vd 195 (276)
T 1vs1_A 122 ADMLQIGARN--MQN-FPLLREVGRSGKPVLLKRGFGNTVEELLAAAEYILLEGNWQVVLVERGIRTFEPSTRFT---LD 195 (276)
T ss_dssp CSEEEECGGG--TTC-HHHHHHHHHHTCCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSB---CB
T ss_pred CCeEEECccc--ccC-HHHHHHHHccCCeEEEcCCCCCCHHHHHHHHHHHHHcCCCeEEEEeCCcCCCCCcCcch---hC
Confidence 8999999774 233 35677777889999998877633433333222 13666665 33 34432222 22
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEec----CCC---hhcHHHHHHcCCcEEEEccccc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDG----GVG---PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDG----GI~---~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+.-|..+++.. +++|.+|- |.. ..-....+.+|||++++=+-+.
T Consensus 196 l~~i~~lk~~~-----~lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~~ 246 (276)
T 1vs1_A 196 VAAVAVLKEAT-----HLPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHPN 246 (276)
T ss_dssp HHHHHHHHHHB-----SSCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCSS
T ss_pred HHHHHHHHHHh-----CCCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecCC
Confidence 44455555542 35665552 332 2334455789999999988763
|
| >1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1 | Back alignment and structure |
|---|
Probab=85.13 E-value=13 Score=35.26 Aligned_cols=117 Identities=14% Similarity=0.200 Sum_probs=76.7
Q ss_pred hhHHHHHHHcCCCEEEEccccc---ccccHHHHHHHHHH-------c-CCcEEEEECCCCC-HHHHHHhhc-cCCEEEEE
Q 023494 128 EQRVPDFIKAGADIVSVHCEQS---STIHLHRTLNQIKD-------L-GAKAGVVLNPATS-LSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~---~~~~i~~~l~~ik~-------~-G~k~Glai~p~t~-ie~~~~~l~-~vD~Ilvm 194 (281)
.+.++.+.+.+...+.|-.+.. ...+...+++.+.+ . ...+|..+.+... .+++..+.+ .+|.|.+-
T Consensus 173 ~~a~~~m~~~~~~~lpVVd~~g~lvGivt~~Dil~~~~~~~~~~d~~~~~~vg~~i~~~~~~~~~a~~l~~~G~d~ivi~ 252 (491)
T 1zfj_A 173 ETAERILHEHRIEKLPLVDNSGRLSGLITIKDIEKVIEFPHAAKDEFGRLLVAAAVGVTSDTFERAEALFEAGADAIVID 252 (491)
T ss_dssp HHHHHHHHHTTCSEEEEECTTSBEEEEEEHHHHHHHHHCTTCCBCTTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHHHHHHhccccccCcCCcEEEEEeccCchhHHHHHHHHHHcCCCeEEEe
Confidence 3457778889988888765431 13456777777763 2 3567777765433 355555544 48988764
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGS 255 (281)
+. .| ..+..++.++++++.++ +.++. .||+ +.+.+..+.++|||.+.+|.
T Consensus 253 ~a----~g--~~~~~~~~i~~l~~~~p----~~pvi-~G~v~t~~~a~~~~~~Gad~I~vg~ 303 (491)
T 1zfj_A 253 TA----HG--HSAGVLRKIAEIRAHFP----NRTLI-AGNIATAEGARALYDAGVDVVKVGI 303 (491)
T ss_dssp CS----CT--TCHHHHHHHHHHHHHCS----SSCEE-EEEECSHHHHHHHHHTTCSEEEECS
T ss_pred ee----cC--cchhHHHHHHHHHHHCC----CCcEe-CCCccCHHHHHHHHHcCCCEEEECc
Confidence 32 22 22456777888887753 35665 5555 48888999999999999983
|
| >1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ... | Back alignment and structure |
|---|
Probab=85.10 E-value=5 Score=37.07 Aligned_cols=122 Identities=14% Similarity=0.129 Sum_probs=71.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCc----cc-cc---------------ccCCHHHHHHcCcCCC-CCeeEEEEecC---
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGR----FV-PN---------------ITIGPLVVDALRPVTD-LPLDVHLMIVE--- 126 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~----fv-pn---------------~~~G~~~I~~ir~~t~-~~idaHLmv~d--- 126 (281)
++.++.+.+.++|.|.|||..-.|- |. |+ ..|-.++++++|+..+ .++-+-|=..+
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~ 241 (364)
T 1vyr_A 162 DFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQ 241 (364)
T ss_dssp HHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBT
T ss_pred HHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccc
Confidence 4445556678899999988754431 11 32 1234567888888643 26666444332
Q ss_pred --------h---hhHHHHHHHcCCCEEEEccccc--ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--CCEE
Q 023494 127 --------P---EQRVPDFIKAGADIVSVHCEQS--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLV 191 (281)
Q Consensus 127 --------p---~~~i~~~~~aGAd~Itvh~Ea~--~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--vD~I 191 (281)
+ .++.+.+.++|+|++++|.-.. ......+.++.+|+.=-..-++. -.-..+..++++.. +|.|
T Consensus 242 ~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~v~~~~~iPvi~~-Ggit~~~a~~~l~~g~aD~V 320 (364)
T 1vyr_A 242 NVDNGPNEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGA-GAYTAEKAEDLIGKGLIDAV 320 (364)
T ss_dssp TBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEE-SSCCHHHHHHHHHTTSCSEE
T ss_pred cccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcccHHHHHHHHHHCCCCEEEE-CCcCHHHHHHHHHCCCccEE
Confidence 1 1235667789999999996310 00112356677776522233333 23356777777764 8999
Q ss_pred EE
Q 023494 192 LI 193 (281)
Q Consensus 192 lv 193 (281)
.+
T Consensus 321 ~~ 322 (364)
T 1vyr_A 321 AF 322 (364)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A* | Back alignment and structure |
|---|
Probab=85.04 E-value=10 Score=39.69 Aligned_cols=83 Identities=20% Similarity=0.212 Sum_probs=58.9
Q ss_pred ceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc--------------cCCHHHHHHcCcCCCCCeeEEE
Q 023494 58 IIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--------------TIGPLVVDALRPVTDLPLDVHL 122 (281)
Q Consensus 58 ~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--------------~~G~~~I~~ir~~t~~~idaHL 122 (281)
..+..++++. |..++.+.++.+++.|+|.|++.+- .|+. .+-.+.++++|+.+++|+.+-+
T Consensus 635 ~~~i~~i~~g~~~~~~~~~a~~~~~~g~d~iein~~----~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~ 710 (1025)
T 1gte_A 635 NIVIASIMCSYNKNDWMELSRKAEASGADALELNLS----CPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKL 710 (1025)
T ss_dssp SEEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC----CBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred CCeEEEecCCCCHHHHHHHHHHHHhcCCCEEEEECC----CCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEe
Confidence 3566777654 7778888899998999999988642 1332 1123477888887788988865
Q ss_pred Eec--ChhhHHHHHHHcCCCEEEE
Q 023494 123 MIV--EPEQRVPDFIKAGADIVSV 144 (281)
Q Consensus 123 mv~--dp~~~i~~~~~aGAd~Itv 144 (281)
.-. |...+.+.+.++|+|+|++
T Consensus 711 ~~~~~~~~~~a~~~~~~G~d~i~v 734 (1025)
T 1gte_A 711 TPNVTDIVSIARAAKEGGADGVTA 734 (1025)
T ss_dssp CSCSSCHHHHHHHHHHHTCSEEEE
T ss_pred CCChHHHHHHHHHHHHcCCCEEEE
Confidence 432 3345677788999999999
|
| >1sgj_A Citrate lyase, beta subunit; trimer, TIM barrel, structural genomics, PSI, protein structure initiative; 1.84A {Deinococcus radiodurans} SCOP: c.1.12.5 | Back alignment and structure |
|---|
Probab=84.95 E-value=1.9 Score=38.39 Aligned_cols=181 Identities=12% Similarity=-0.028 Sum_probs=99.3
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccc--ccccCCH-HHHHHcCc----CCCCCeeEEEEecCh--hhH-
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFV--PNITIGP-LVVDALRP----VTDLPLDVHLMIVEP--EQR- 130 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fv--pn~~~G~-~~I~~ir~----~t~~~idaHLmv~dp--~~~- 130 (281)
..|.|.+...+- +.++.+...|+|++-+|.-|+... .+..... .+...++. ..+....+ -++.. ..+
T Consensus 8 ~rs~L~~p~~~~-~~~~~a~~~gaD~vilDlEdav~~~~~~k~~Ar~~v~~~l~~~~~~~~~~~~~V--Rv~~~~~~~~~ 84 (284)
T 1sgj_A 8 LRSVLFAPGNRA-DLIAKLPRSAPDAVVIDLEDAVPGTAEAKAAARPVAHDAARDLIAAAPHLAVFV--RVNALHSPYFE 84 (284)
T ss_dssp CSEEEEEETTCH-HHHHHTTTTCCSEEEEESSTTSCSSHHHHHHHHHHHHHHHHHHHHHSTTSEEEE--ECCCTTSTTHH
T ss_pred CceEEEccCCCH-HHHHHHHhCCCCEEEEECCCCCCCchhhHHHHHHHHHHHHHhcccccCCCeEEE--EeCCCCCHhHH
Confidence 345555554443 456667778999999999998432 1111111 22222322 12222333 33332 222
Q ss_pred --HHHHHHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc--cCCEEEEEee----cCCC
Q 023494 131 --VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD--VVDLVLIMSV----NPGF 200 (281)
Q Consensus 131 --i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV----~pG~ 200 (281)
+..+.+ |+++|.++--. +.+++..+.+.++.. .++++..|....-+..+.+++. .+|.+.+.+. .-|.
T Consensus 85 ~dl~~~l~-g~~~i~lPkv~-s~~~v~~~~~~l~~~g~~~~i~~~IEt~~av~~~~eIa~~~~vd~l~iG~~DL~~~lg~ 162 (284)
T 1sgj_A 85 DDLSVLTP-ELSGVVVPKLE-MGAEARQVAQMLQERSLPLPILAGLETGAGVWNAREIMEVPEVAWAYFGAEDYTTDLGG 162 (284)
T ss_dssp HHGGGCCT-TSSEEEECSCC-SHHHHHHHHHHHHHTTCCCCEEEEECSHHHHHTHHHHHTSTTEEEEEECHHHHHHHHTC
T ss_pred HHHHHHhc-cCCEEEeCCCC-CHHHHHHHHHHHHhcCCCeEEEEEecCHHHHHHHHHHHcCCCCcEEEECHHHHHHHhCC
Confidence 333456 99999998554 356677777777765 4677777744444466777664 4677766432 2244
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-h-------hcHHHHHHcCCc
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-P-------KNAYKVIEAGAN 249 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~-------e~i~~~~~aGAD 249 (281)
.+++..+..+.-++++.......| .+. +||=.. . +.....++.|.+
T Consensus 163 ~~~~~~~~~~~a~~~iv~aa~a~G--~~~-i~~v~~~~~d~~~l~~~~~~~~~~Gf~ 216 (284)
T 1sgj_A 163 KRTPGGLEVLYARSQVALAARLTG--VAA-LDIVVTALNDPETFRADAEQGRALGYS 216 (284)
T ss_dssp CCCSSCGGGHHHHHHHHHHHHHHT--CEE-EECCCCCCSCHHHHHHHHHHHHHTTCS
T ss_pred CCCCChHHHHHHHHHHHHHHHHcC--CCe-eeCCcCCCCCHHHHHHHHHHHHhCCCC
Confidence 444444555555555555554443 333 444221 2 456778999996
|
| >2ox4_A Putative mandelate racemase; enolase, dehydratase, structural genomics, protein structure initiative, PSI, nysgrc; 1.80A {Zymomonas mobilis} | Back alignment and structure |
|---|
Probab=84.88 E-value=2.2 Score=39.72 Aligned_cols=115 Identities=10% Similarity=0.072 Sum_probs=72.6
Q ss_pred ChhhHHHH---HHHcCCCEEEEccc-----cc-------------ccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHH
Q 023494 126 EPEQRVPD---FIKAGADIVSVHCE-----QS-------------STIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAI 181 (281)
Q Consensus 126 dp~~~i~~---~~~aGAd~Itvh~E-----a~-------------~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~ 181 (281)
+|+.+.+. +.+.|.+.+=+|.. .. ......+.++++|+ . ++.+.+..|.....+..
T Consensus 146 ~~e~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~g~~~~~~~~~~~e~v~avr~avG~d~~l~vDan~~~~~~~a 225 (403)
T 2ox4_A 146 RKEEYAEEALKAVAEGYDAVKVDVLAHDRNGSREGVFLEGPLPSETIKIGVERVEAIRNAVGPDVDIIVENHGHTDLVSA 225 (403)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSSCTTSCCTTCCCSSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEeccccCCccccccCcccCCCchHHHHHHHHHHHHHHHHhCCCCeEEEECCCCCCHHHH
Confidence 67766544 46789999999852 10 01224467777777 3 46677788877777665
Q ss_pred HHhhcc---CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 182 ECVLDV---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 182 ~~~l~~---vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.++++. .+...+ + |++.+..++-.+++++. .+++|..|+.+. ++.+.++++.| +|++.+
T Consensus 226 i~~~~~l~~~~i~~i---E-----~P~~~~d~~~~~~l~~~-----~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 289 (403)
T 2ox4_A 226 IQFAKAIEEFNIFFY---E-----EINTPLNPRLLKEAKKK-----IDIPLASGERIYSRWGFLPFLEDRSIDVIQP 289 (403)
T ss_dssp HHHHHHHGGGCEEEE---E-----CCSCTTSTHHHHHHHHT-----CCSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHhhCCCEE---e-----CCCChhhHHHHHHHHHh-----CCCCEEecCCcCCHHHHHHHHHcCCCCEEec
Confidence 555443 232222 2 44545555555666543 257899999997 78888888876 677754
|
| >3r0u_A Enzyme of enolase superfamily; structural genomics, putative epimerase, PSI-biolog YORK structural genomics research consortium; HET: MSE TAR; 1.90A {Francisella philomiragia subsp} PDB: 3px5_A* 3r0k_A* 3r10_A 3r11_A 3r1z_A* | Back alignment and structure |
|---|
Probab=84.83 E-value=5.8 Score=36.81 Aligned_cols=126 Identities=17% Similarity=0.178 Sum_probs=81.0
Q ss_pred CCeeEEEEecChhhHHHH---HHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccC-
Q 023494 116 LPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVV- 188 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~v- 188 (281)
++..+.+-..+|+..++. +.+.|...+=+..-. +.+.-.+.++++|+. ++.+.+..|.....+....+++..
T Consensus 132 v~~y~t~g~~~~e~~~~~a~~~~~~Gf~~~KlK~g~-~~~~d~~~v~avR~a~g~~~~L~vDaN~~w~~~~A~~~~~~l~ 210 (379)
T 3r0u_A 132 IVTDVSISCGNVAETIQNIQNGVEANFTAIKVKTGA-DFNRDIQLLKALDNEFSKNIKFRFDANQGWNLAQTKQFIEEIN 210 (379)
T ss_dssp EEBCEEECCCCHHHHHHHHHHHHHTTCCEEEEECSS-CHHHHHHHHHHHHHHCCTTSEEEEECTTCCCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCHHHHHHHHHHHHHcCCCEEeeecCC-CHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCHHHHHHHHHHHh
Confidence 455566666788766544 456799998887643 122334567777774 467888888888887666654432
Q ss_pred C--E-EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 189 D--L-VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 189 D--~-IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
+ + +.. + .|++.+..++-++++++.. .++|+.|..+. .+.+..+++.| +|++.+-
T Consensus 211 ~~~~~l~~--i-----EeP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~k 269 (379)
T 3r0u_A 211 KYSLNVEI--I-----EQPVKYYDIKAMAEITKFS-----NIPVVADESVFDAKDAERVIDEQACNMINIK 269 (379)
T ss_dssp TSCCCEEE--E-----ECCSCTTCHHHHHHHHHHC-----SSCEEESTTCSSHHHHHHHHHTTCCSEEEEC
T ss_pred hcCCCcEE--E-----ECCCCcccHHHHHHHHhcC-----CCCEEeCCccCCHHHHHHHHHcCCCCEEEEC
Confidence 2 1 221 1 2555555566666666543 47899998887 67788888876 6887764
|
| >2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=84.65 E-value=13 Score=31.33 Aligned_cols=95 Identities=12% Similarity=0.075 Sum_probs=53.1
Q ss_pred hhhHHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcE-EEEE--CCCCC----HHHHHHhhcc-----CC
Q 023494 127 PEQRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKA-GVVL--NPATS----LSAIECVLDV-----VD 189 (281)
Q Consensus 127 p~~~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~-Glai--~p~t~----ie~~~~~l~~-----vD 189 (281)
+...++.+.++|.+.|-+..... ...++.++.+.++++|+++ ++.. ..+.+ .+.++..++. ++
T Consensus 21 ~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~ 100 (272)
T 2q02_A 21 IEAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEKYGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGAR 100 (272)
T ss_dssp HHHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHHTTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHHcCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCC
Confidence 44567777888888888764311 1245777788888888887 4432 11111 1223333332 45
Q ss_pred EEEEEeecCCCCCCccchhH-HHHHHHHHHHhhhcC
Q 023494 190 LVLIMSVNPGFGGQSFIESQ-VKKISDLRRMCLEKG 224 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~f~~~~-l~kI~~lr~l~~~~~ 224 (281)
+|.+ +||..+..-.... .+.++++.+...+.|
T Consensus 101 ~v~~---~~g~~~~~~~~~~~~~~l~~l~~~a~~~g 133 (272)
T 2q02_A 101 ALVL---CPLNDGTIVPPEVTVEAIKRLSDLFARYD 133 (272)
T ss_dssp EEEE---CCCCSSBCCCHHHHHHHHHHHHHHHHTTT
T ss_pred EEEE---ccCCCchhHHHHHHHHHHHHHHHHHHHcC
Confidence 6544 5665443223444 666777777665544
|
| >1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1 | Back alignment and structure |
|---|
Probab=84.61 E-value=5.7 Score=37.94 Aligned_cols=119 Identities=20% Similarity=0.185 Sum_probs=69.9
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
....+.++.+.++|+|.+.++...|++ ..-.+.++++|+.+ ++|+.+- -+.+++ ..+.+.++|+|.|.+..+.
T Consensus 236 ~~~~~~a~~l~~aGvd~v~i~~~~G~~----~~~~e~i~~i~~~~p~~pvi~g-~~~t~e-~a~~l~~~G~d~I~v~~~~ 309 (494)
T 1vrd_A 236 PETMERVEKLVKAGVDVIVIDTAHGHS----RRVIETLEMIKADYPDLPVVAG-NVATPE-GTEALIKAGADAVKVGVGP 309 (494)
T ss_dssp TTHHHHHHHHHHTTCSEEEECCSCCSS----HHHHHHHHHHHHHCTTSCEEEE-EECSHH-HHHHHHHTTCSEEEECSSC
T ss_pred HhHHHHHHHHHHhCCCEEEEEecCCch----HHHHHHHHHHHHHCCCceEEeC-CcCCHH-HHHHHHHcCCCEEEEcCCC
Confidence 455678888999999999887766643 12357788888864 6776552 234443 4577889999999994331
Q ss_pred c-----------ccccH---HHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEE
Q 023494 149 S-----------STIHL---HRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIM 194 (281)
Q Consensus 149 ~-----------~~~~i---~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilvm 194 (281)
. ...+. .++.+..++.++.+..+=.-.++.+..+.+...+|.|.+.
T Consensus 310 G~~~~~~~~~~~g~p~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~iG 369 (494)
T 1vrd_A 310 GSICTTRVVAGVGVPQLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVMVG 369 (494)
T ss_dssp STTCHHHHHHCCCCCHHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CccccccccCCCCccHHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 0 01122 2222223333555544322234444444444469998763
|
| >3e49_A Uncharacterized protein DUF849 with A TIM barrel; structural genomics, joint center for structural genomics; HET: MSE; 1.75A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=84.60 E-value=8.5 Score=35.03 Aligned_cols=194 Identities=15% Similarity=0.167 Sum_probs=108.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeee---CcccccccCCHHHHHHcCcCCCCCeeEEEEe-----cChhhHHHHHHHcCCCEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMD---GRFVPNITIGPLVVDALRPVTDLPLDVHLMI-----VEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImD---G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-----~dp~~~i~~~~~aGAd~I 142 (281)
.+.++...+.++|+..+|+-+-| |.=......--++++.||+.++ +.+.+-+ .+|+.-+..+.+...|..
T Consensus 33 Eia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d--~iI~~TTgg~~~~~~eerla~~~~~~Pe~a 110 (311)
T 3e49_A 33 EVAQASIGAAEAGAAVIHLHARDPRDGRPTQDPAAFAEFLPRIKSNTD--AVINLTTGGSPHMTVEERLRPATHYMPELA 110 (311)
T ss_dssp HHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTHHHHHHHHCC--CEEEECSCSCTTSCHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCC--cEEEECCCCCCCCCHHHHHHHHHhcCCCee
Confidence 45555667778999999998877 5322222334567888887664 3333333 234444444445578888
Q ss_pred EEccccc---------------------------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--
Q 023494 143 SVHCEQS---------------------------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-- 187 (281)
Q Consensus 143 tvh~Ea~---------------------------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-- 187 (281)
++-.-.. +...+.++++.++++|+++-+.+-....+..+..+++.
T Consensus 111 Sln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~~~v~~n~~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl 190 (311)
T 3e49_A 111 SLNMGSMNFGLYPMLERFKEFAHGWEREHLERSRDLVFKNTFADIEFILKTCGGNGTRFEFECYDTSHLYNLAHFVDRKL 190 (311)
T ss_dssp EEECSCEECCCGGGGGTCCCCSSHHHHHHHHGGGGCEECCCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHHHHHTTC
T ss_pred eecCCCcccccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeeEEEEECHHHHHHHHHHHHcCC
Confidence 7762210 12258889999999999999988644455556555543
Q ss_pred ----CCEEEEEeecCCCCCCccchhHHHHHHHH-HHHhhhcCCCCeEEEecCCChh---cHHHHHHcCCcEEEEc--ccc
Q 023494 188 ----VDLVLIMSVNPGFGGQSFIESQVKKISDL-RRMCLEKGVNPWIEVDGGVGPK---NAYKVIEAGANALVAG--SAV 257 (281)
Q Consensus 188 ----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e---~i~~~~~aGAD~~VvG--SaI 257 (281)
..+-++|++. +|++-.++.+.-+.+. .++++. +....| -|+... -....+..|-+ +=+| =.+
T Consensus 191 ~~~p~~~~~vlGv~---~g~~~~~~~L~~~~~~~~~~~~~---~~~wsv-~~~Gr~~~p~~~~A~~~GGh-vRVGlEDnl 262 (311)
T 3e49_A 191 ATPPFFVQTVFGLL---GGIGPHPEDLAHMRRTADRLFGA---DYVWSI-LGAGRHQIPLASIGAAQGAN-VRVGLEDSL 262 (311)
T ss_dssp SCSSEEEEEEESCT---TSCCCCHHHHHHHHHHHHHHHGG---GEEEEE-EECGGGHHHHHHHHHTTTCE-EEECTTTCS
T ss_pred CCCCeEEEEEecCC---CCCCCCHHHHHHHHHHHHhhCCC---CCeEEE-EeeChhhHHHHHHHHHcCCC-eEEcCCcce
Confidence 2233445443 4666666666554322 244443 233232 233333 34455778887 4556 224
Q ss_pred cC-----CCCHHHHHHHHHHhc
Q 023494 258 FG-----AKDYAEAIKGIKTSK 274 (281)
Q Consensus 258 f~-----a~dp~~~~~~l~~~~ 274 (281)
+- +++-.+.++++.+.+
T Consensus 263 ~~~~G~lA~sNaelV~~~~~i~ 284 (311)
T 3e49_A 263 WIAPGELAETNAAQVRKIRQVI 284 (311)
T ss_dssp EEETTEECSCHHHHHHHHHHHH
T ss_pred ecCCCCCCCCHHHHHHHHHHHH
Confidence 42 234445555555543
|
| >3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A* | Back alignment and structure |
|---|
Probab=84.53 E-value=8.6 Score=33.01 Aligned_cols=151 Identities=15% Similarity=0.162 Sum_probs=81.5
Q ss_pred CHHHHHHcCcCCCCCeeEEEEecChh-hHHHHHHHcCCCEEEEccccc------------------------ccccH-HH
Q 023494 103 GPLVVDALRPVTDLPLDVHLMIVEPE-QRVPDFIKAGADIVSVHCEQS------------------------STIHL-HR 156 (281)
Q Consensus 103 G~~~I~~ir~~t~~~idaHLmv~dp~-~~i~~~~~aGAd~Itvh~Ea~------------------------~~~~i-~~ 156 (281)
|.++++.+|+. +.|+.+ ++.... .....+.++||+....=.... +.... ..
T Consensus 63 G~~~~~~lr~~-~~pvi~--lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~~~~~~~~~~~~~~~~~~~~ILivDD~~~~~~~ 139 (259)
T 3luf_A 63 SGEAVKVLLER-GLPVVI--LTADISEDKREAWLEAGVLDYVMKDSRHSLQYAVGLVHRLYLNQQIEVLVVDDSRTSRHR 139 (259)
T ss_dssp TSHHHHHHHHT-TCCEEE--EECC-CHHHHHHHHHTTCCEEEECSSHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHH
T ss_pred HHHHHHHHHhC-CCCEEE--EEccCCHHHHHHHHHCCCcEEEeCCchhHHHHHHHhhhhHhhcCCCcEEEEeCCHHHHHH
Confidence 77888888874 466654 554332 345567899997655432100 00011 12
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--CCEEEEEeec-CCCCCCccchhHHHHHHHHHHHhhhcCCCCeE-EEe
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLIMSVN-PGFGGQSFIESQVKKISDLRRMCLEKGVNPWI-EVD 232 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--vD~IlvmsV~-pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I-~VD 232 (281)
+...+++.|..+..+-+ ..+.++.+... +|.|+ +-++ ||..| ++-++++|+..+. .+++| .+.
T Consensus 140 l~~~L~~~~~~v~~a~~---~~eal~~l~~~~~~dlvl-lD~~mP~~dG-------~~l~~~lr~~~~~--~~~~ii~~s 206 (259)
T 3luf_A 140 TMAQLRKQLLQVHEASH---AREALATLEQHPAIRLVL-VDYYMPEIDG-------ISLVRMLRERYSK--QQLAIIGIS 206 (259)
T ss_dssp HHHHHHTTTCEEEEESS---HHHHHHHHHHCTTEEEEE-ECSCCSSSCH-------HHHHHHHHHHCCT--TTSEEEEEE
T ss_pred HHHHHHHcCcEEEEeCC---HHHHHHHHhcCCCCCEEE-EcCCCCCCCH-------HHHHHHHHhccCC--CCCeEEEEE
Confidence 22334455655544433 22333332222 45554 3332 55444 5556666654321 23454 456
Q ss_pred cCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 233 GGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 233 GGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+.-+.+....+.++||+.++ .+.-++++-..++++.+
T Consensus 207 ~~~~~~~~~~a~~~Ga~~yl-----~KP~~~~~L~~~i~~~l 243 (259)
T 3luf_A 207 VSDKRGLSARYLKQGANDFL-----NQPFEPEELQCRVSHNL 243 (259)
T ss_dssp CSSSSSHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHhcChhheE-----cCCCCHHHHHHHHHHHH
Confidence 66677788889999999764 45567776666666543
|
| >3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=84.53 E-value=1 Score=38.36 Aligned_cols=82 Identities=18% Similarity=0.254 Sum_probs=66.5
Q ss_pred CCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHH
Q 023494 56 SDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 56 ~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~ 135 (281)
..+...+-++-.|-..++..++.+.+...|.+++ |-| . -|++++++++.++.|+.+==.+.+++ -++.+.
T Consensus 100 ~gL~tIqR~FliDS~al~~~~~~i~~~~PD~iEi--LPG-----i--~p~iI~~i~~~~~~PiIaGGlI~~~e-dv~~al 169 (192)
T 3kts_A 100 HKMLAIQRLFMIDSSAYNKGVALIQKVQPDCIEL--LPG-----I--IPEQVQKMTQKLHIPVIAGGLIETSE-QVNQVI 169 (192)
T ss_dssp TTCEEEEEEECCSHHHHHHHHHHHHHHCCSEEEE--ECT-----T--CHHHHHHHHHHHCCCEEEESSCCSHH-HHHHHH
T ss_pred CCCeEEEEEEEEEcchHHHHHHHHhhcCCCEEEE--CCc-----h--hHHHHHHHHHhcCCCEEEECCcCCHH-HHHHHH
Confidence 3556777888889999999999999988998754 544 2 36899999998889999988888876 567788
Q ss_pred HcCCCEEEEccc
Q 023494 136 KAGADIVSVHCE 147 (281)
Q Consensus 136 ~aGAd~Itvh~E 147 (281)
++||+.|+..-.
T Consensus 170 ~aGA~aVsTs~~ 181 (192)
T 3kts_A 170 ASGAIAVTTSNK 181 (192)
T ss_dssp TTTEEEEEECCG
T ss_pred HcCCeEEEeCCH
Confidence 999999987643
|
| >3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A | Back alignment and structure |
|---|
Probab=84.52 E-value=2.8 Score=36.76 Aligned_cols=74 Identities=11% Similarity=0.184 Sum_probs=52.8
Q ss_pred EEEEecChhh-----HHHHHHHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEE
Q 023494 120 VHLMIVEPEQ-----RVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLI 193 (281)
Q Consensus 120 aHLmv~dp~~-----~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~Ilv 193 (281)
-|+..-||.+ .++.+.+.|+|.|.+..... ..++..++++.+|+..+-+.+. |..+ +.+.+.+|.+++
T Consensus 13 ~h~~~~DPdk~~~~~~l~~~~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~~~~Piil~--p~~~----~~~~~gaD~il~ 86 (235)
T 3w01_A 13 RHIFKLDPAKHISDDDLDAICMSQTDAIMIGGTDDVTEDNVIHLMSKIRRYPLPLVLE--ISNI----ESVMPGFDFYFV 86 (235)
T ss_dssp CEEEEECTTSCCCHHHHHHHHTSSCSEEEECCSSCCCHHHHHHHHHHHTTSCSCEEEE--CCCS----TTCCTTCSEEEE
T ss_pred eEEEeECCCCcCCHHHHHHHHHcCCCEEEECCcCCcCHHHHHHHHHHhcCcCCCEEEe--cCCH----HHhhcCCCEEEE
Confidence 3677778864 35567889999999998752 2446788899998865555553 3433 335668999999
Q ss_pred EeecCC
Q 023494 194 MSVNPG 199 (281)
Q Consensus 194 msV~pG 199 (281)
+++-.+
T Consensus 87 pslln~ 92 (235)
T 3w01_A 87 PTVLNS 92 (235)
T ss_dssp EEETTB
T ss_pred ccccCC
Confidence 999665
|
| >2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* | Back alignment and structure |
|---|
Probab=84.49 E-value=19 Score=32.99 Aligned_cols=175 Identities=13% Similarity=0.101 Sum_probs=97.0
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-|-+ =|+.--..++.. ++++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 48 ~ID~~~l~~lv~~li~~Gv~Gl~v---~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~ 124 (343)
T 2v9d_A 48 QLDKPGTAALIDDLIKAGVDGLFF---LGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQ 124 (343)
T ss_dssp SBCHHHHHHHHHHHHHTTCSCEEE---SSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEe---CccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHh
Confidence 467777889999999999987633 233222223333 334444432 2478888877766654 4455678
Q ss_pred cCCCEEEEcccc---cccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhh-ccCCEEEEEeecCCCCCCccc
Q 023494 137 AGADIVSVHCEQ---SSTIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVL-DVVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 137 aGAd~Itvh~Ea---~~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+|||.+.+..=. .+.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.++. +...++.+= +. .|
T Consensus 125 ~Gadavlv~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~~~pnIvgiK--ds--sg---- 196 (343)
T 2v9d_A 125 AGADGIVVINPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLADSRSNIIGIK--DT--ID---- 196 (343)
T ss_dssp HTCSEEEEECCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHHHCTTEEEEE--EC--CS----
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHHhCCCEEEEE--eC--CC----
Confidence 899988775221 112234444444433 356665544442 3556777776 444444331 11 11
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++..+..+.++.+ ..| - -+.+-.....|++.+|.|.+
T Consensus 197 --d~~~~~~l~~~~~~~~~~f~v-~~G-~-D~~~l~~l~~Ga~G~is~~a 241 (343)
T 2v9d_A 197 --SVAHLRSMIHTVKGAHPHFTV-LCG-Y-DDHLFNTLLLGGDGAISASG 241 (343)
T ss_dssp --CHHHHHHHHHHHHHHCTTCEE-EES-S-GGGHHHHHHTTCCEECCGGG
T ss_pred --CHHHHHHHHHhcCCCCCCEEE-EEC-c-HHHHHHHHHCCCCEEEeCHH
Confidence 244555555554311113444 333 2 33566678899999999965
|
| >3ro6_B Putative chloromuconate cycloisomerase; TIM barrel; 2.20A {Methylococcus capsulatus} PDB: 3rit_A | Back alignment and structure |
|---|
Probab=84.43 E-value=3.9 Score=37.42 Aligned_cols=124 Identities=15% Similarity=0.189 Sum_probs=81.1
Q ss_pred CCeeEEEEecChhhHHHH---HHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc--
Q 023494 116 LPLDVHLMIVEPEQRVPD---FIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-- 187 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~~---~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-- 187 (281)
++..+.+-..+|+.+.+. +.+.|...+=+..-. +.+.-.+.++++|+. ++.+.+..|.....+....+++.
T Consensus 130 v~~~~~~~~~~~~~~~~~a~~~~~~G~~~~K~K~G~-~~~~d~~~v~avR~~~g~~~~l~vDan~~~~~~~a~~~~~~l~ 208 (356)
T 3ro6_B 130 LPTSVTIGIKPVEETLAEAREHLALGFRVLKVKLCG-DEEQDFERLRRLHETLAGRAVVRVDPNQSYDRDGLLRLDRLVQ 208 (356)
T ss_dssp EEBCEEECSCCHHHHHHHHHHHHHTTCCEEEEECCS-CHHHHHHHHHHHHHHHTTSSEEEEECTTCCCHHHHHHHHHHHH
T ss_pred eeeeEEEcCCCHHHHHHHHHHHHHcCCCEEEEEeCC-CHHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHH
Confidence 455556666788876544 466799999887642 122233556666664 56777888888887765555432
Q ss_pred ---CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC--CcEEEEcc
Q 023494 188 ---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG--ANALVAGS 255 (281)
Q Consensus 188 ---vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG--AD~~VvGS 255 (281)
+++| .|++.+..++.++++++... ++|..|+.+. .+.+..+++.| +|++.+--
T Consensus 209 ~~~i~~i----------EqP~~~~d~~~~~~l~~~~~-----iPIa~dE~~~~~~~~~~~~~~~~~~d~v~~k~ 267 (356)
T 3ro6_B 209 ELGIEFI----------EQPFPAGRTDWLRALPKAIR-----RRIAADESLLGPADAFALAAPPAACGIFNIKL 267 (356)
T ss_dssp HTTCCCE----------ECCSCTTCHHHHHTSCHHHH-----HTEEESTTCCSHHHHHHHHSSSCSCSEEEECH
T ss_pred hcCCCEE----------ECCCCCCcHHHHHHHHhcCC-----CCEEeCCcCCCHHHHHHHHhcCCcCCEEEEcc
Confidence 3344 35666555666666665543 5899999987 67788888865 89888753
|
| >4g9p_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; oxidoreductase, isoprenoid biosynthesis, non mevalonate PATH iron-sulphur-cluster; HET: CDI MES; 1.55A {Thermus thermophilus} PDB: 2y0f_A* | Back alignment and structure |
|---|
Probab=84.05 E-value=9.8 Score=35.94 Aligned_cols=112 Identities=21% Similarity=0.329 Sum_probs=67.6
Q ss_pred CCCeeEEEEecCh----h---hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHH----cCCc--EEEEECCCCCH--H
Q 023494 115 DLPLDVHLMIVEP----E---QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD----LGAK--AGVVLNPATSL--S 179 (281)
Q Consensus 115 ~~~idaHLmv~dp----~---~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~----~G~k--~Glai~p~t~i--e 179 (281)
+.|+.+.=|++.+ . .-+..+.++|+|+|-+-.-. .+-.+.+..|++ .|.. +.-.|+-+..+ .
T Consensus 21 ~~PI~VQSMtnT~T~Dv~aTv~QI~~L~~aG~eiVRvaVp~---~~~A~al~~I~~~l~~~~~~vPLVADiHF~~~~al~ 97 (406)
T 4g9p_A 21 AHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVND---EEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLR 97 (406)
T ss_dssp TSCCEEEEECCSCTTCHHHHHHHHHHHHHHTCSEEEEECCS---HHHHHHHHHHHHHHHHTTCCCCEEEECCSSHHHHHH
T ss_pred CCceeeeecCCCCcccHHHHHHHHHHHHHcCCCEEEEecCC---HHHHHhHHHHHHHHHhcCCCCceEeeecccHHHHHH
Confidence 4689999999654 2 23567889999999887642 333455555554 4554 44456544322 2
Q ss_pred HHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 180 AIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 180 ~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
.+......+|.+ -+|||--|.. ...-++++++.+...+++..+.|.|-.|
T Consensus 98 a~~~~a~~~dki---RINPGNig~~--~k~~e~~~~vv~~ak~~~~pIRIGVN~G 147 (406)
T 4g9p_A 98 KYPKMAEALDKF---RINPGTLGRG--RHKDEHFAEMIRIAMDLGKPVRIGANWG 147 (406)
T ss_dssp HCHHHHHHCSEE---EECTTSSCST--HHHHHHHHHHHHHHHHHTCCEEEEEEGG
T ss_pred HHHHHHhHHhhc---ccCccccCcc--ccHHHHHHHHHHHHHHccCCceeccccc
Confidence 223344457776 5699975532 1223456666666666666778888655
|
| >1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A | Back alignment and structure |
|---|
Probab=83.92 E-value=14 Score=31.16 Aligned_cols=142 Identities=13% Similarity=0.109 Sum_probs=74.0
Q ss_pred ChhhHHHHHHHcCCCEEEEc-cccc----ccccHHHHHHHHHHcCCcEE-EE--ECCC--CC------HHHHHHhhcc--
Q 023494 126 EPEQRVPDFIKAGADIVSVH-CEQS----STIHLHRTLNQIKDLGAKAG-VV--LNPA--TS------LSAIECVLDV-- 187 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh-~Ea~----~~~~i~~~l~~ik~~G~k~G-la--i~p~--t~------ie~~~~~l~~-- 187 (281)
++.+.++.+.++|.+.|-+. .... ...++.++.+.++++|+++. +. .+.. .+ ++.++..++.
T Consensus 15 ~~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~ 94 (278)
T 1i60_A 15 NLKLDLELCEKHGYDYIEIRTMDKLPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCK 94 (278)
T ss_dssp CHHHHHHHHHHTTCSEEEEETTTHHHHHTTSSCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCEEEEccHHHHHHHhccCCHHHHHHHHHHcCCCeeeeccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34556788888999998887 4421 12457778888888998875 32 1221 11 2333333332
Q ss_pred ---CCEEEEEeecCCCCCCcc-----chhHHHHHHHHHHHhhhcCCCCeEEEecCC-----ChhcHHHHHH-cCCc-EEE
Q 023494 188 ---VDLVLIMSVNPGFGGQSF-----IESQVKKISDLRRMCLEKGVNPWIEVDGGV-----GPKNAYKVIE-AGAN-ALV 252 (281)
Q Consensus 188 ---vD~IlvmsV~pG~~GQ~f-----~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-----~~e~i~~~~~-aGAD-~~V 252 (281)
+++|.+ +||.....+ .....+.++++.+...+.|..+-++-.++- +++.+..+++ .+.+ +=+
T Consensus 95 ~lG~~~v~~---~~g~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lEn~~~~~~~~~~~~~~~~l~~~~~~~~~g~ 171 (278)
T 1i60_A 95 TLGVKYVVA---VPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTVNRDNVGL 171 (278)
T ss_dssp HHTCCEEEE---ECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHHCCTTEEE
T ss_pred HcCCCEEEE---ecCCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEecCCccchhcCHHHHHHHHHHhCCCCeeE
Confidence 566655 455432212 233455666666666655544444444432 3455555544 3322 211
Q ss_pred ---EcccccCCCCHHHHHHHH
Q 023494 253 ---AGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 253 ---vGSaIf~a~dp~~~~~~l 270 (281)
.|-......||.+.++.+
T Consensus 172 ~~D~~h~~~~g~d~~~~~~~~ 192 (278)
T 1i60_A 172 VLDSFHFHAMGSNIESLKQAD 192 (278)
T ss_dssp EEEHHHHHHTTCCHHHHHTSC
T ss_pred EEEeEEEeecCCCHHHHHhcC
Confidence 233333446776655444
|
| >1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=83.89 E-value=1.8 Score=40.37 Aligned_cols=76 Identities=12% Similarity=0.186 Sum_probs=43.2
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcc-c--------ccccCC-----HHHHHHcCcC----C-CCCeeEEEEec--------
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRF-V--------PNITIG-----PLVVDALRPV----T-DLPLDVHLMIV-------- 125 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~f-v--------pn~~~G-----~~~I~~ir~~----t-~~~idaHLmv~-------- 125 (281)
.++++.+.++|+++|++|--.... . |..... ...++.++.. + +.++.+|+--.
T Consensus 170 ~~ei~~l~~aG~~~IQiDeP~l~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~n~~~~~~~~~~~i~~HiC~gn~~s~~~~ 249 (375)
T 1ypx_A 170 QKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPETLQETYKNLINEAIKHKPADMVITMHICRGNFRSTWIA 249 (375)
T ss_dssp HHHHHHHHHTTCCEEEEEECHHHHTTSCC--------CCSTTTHHHHHHHHHHHHTTTCCTTCEEEEEECCC--------
T ss_pred HHHHHHHHHCCCCEEEecCCchhhhhccchhcccccccCCHHHHHHHHHHHHHHHHhcCCCCCeEEEEEeccccCCcccc
Confidence 355677889999999999432111 1 111111 2224444332 2 35666676532
Q ss_pred --ChhhHHHHHH-HcCCCEEEEcccc
Q 023494 126 --EPEQRVPDFI-KAGADIVSVHCEQ 148 (281)
Q Consensus 126 --dp~~~i~~~~-~aGAd~Itvh~Ea 148 (281)
+-...++.+. +.++|.+++-+.+
T Consensus 250 ~g~~~~i~~~l~~~~~~d~i~lE~~~ 275 (375)
T 1ypx_A 250 EGGYGPVAETLFGKLNIDGFFLEYDN 275 (375)
T ss_dssp --CCSGGGHHHHTTCCCSEEEEECCS
T ss_pred ccchHHHHHHHHhhCCCCEEEEEecC
Confidence 1123467777 9999999988654
|
| >3ddm_A Putative mandelate racemase/muconate lactonizing enzyme; structural genomics, NYSGXRC, target 9284B, enolase family, PSI-2; 2.60A {Bordetella bronchiseptica} | Back alignment and structure |
|---|
Probab=83.88 E-value=5.8 Score=36.93 Aligned_cols=112 Identities=9% Similarity=0.063 Sum_probs=73.4
Q ss_pred ChhhHH---HHHHHcCCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 126 EPEQRV---PDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 126 dp~~~i---~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
+|+.+. +.+.+.|.+.+=++.-. ..+.-.+.++++|+. ++.+.+..|.....+....+++. +++|
T Consensus 155 ~~e~~~~~a~~~~~~G~~~iKlK~g~-~~~~d~~~v~avR~a~g~~~~l~vDaN~~~~~~~A~~~~~~L~~~~i~~i--- 230 (392)
T 3ddm_A 155 NPENPEDVVARKAAEGYRAFKLKVGF-DDARDVRNALHVRELLGAATPLMADANQGWDLPRARQMAQRLGPAQLDWL--- 230 (392)
T ss_dssp CSSSHHHHHHHHHHHTCCCEEEECSS-CHHHHHHHHHHHHHHHCSSSCEEEECTTCCCHHHHHHHHHHHGGGCCSEE---
T ss_pred CHHHHHHHHHHHHHcCCCEEEEecCC-CHHHHHHHHHHHHHhcCCCceEEEeCCCCCCHHHHHHHHHHHHHhCCCEE---
Confidence 365544 45567899999888643 123334567777775 46788888888888765555432 3444
Q ss_pred eecCCCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 195 SVNPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.|++.+.. ++-++++++.. +++|..|+.+. .+.+..+++.| +|++.+
T Consensus 231 -------EeP~~~~d~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~a~d~v~~ 280 (392)
T 3ddm_A 231 -------EEPLRADRPAAEWAELAQAA-----PMPLAGGENIAGVAAFETALAARSLRVMQP 280 (392)
T ss_dssp -------ECCSCTTSCHHHHHHHHHHC-----SSCEEECTTCCSHHHHHHHHHHTCEEEECC
T ss_pred -------ECCCCccchHHHHHHHHHhc-----CCCEEeCCCCCCHHHHHHHHHcCCCCEEEe
Confidence 25555555 66666666543 47999999987 77888887766 566544
|
| >3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=83.85 E-value=8.2 Score=33.29 Aligned_cols=113 Identities=15% Similarity=0.068 Sum_probs=66.5
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE--cc-cc-
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV--HC-EQ- 148 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv--h~-Ea- 148 (281)
.++++.+.+.|+|.+.+|.... .+-.+-.++++.+++. +.++.+. +.+ .+..+.+.++|+|+|.+ +. ..
T Consensus 91 ~~~i~~~~~~Gad~V~l~~~~~---~~p~~l~~~i~~~~~~-g~~v~~~--v~t-~eea~~a~~~Gad~Ig~~~~g~t~~ 163 (232)
T 3igs_A 91 LDDVDALAQAGAAIIAVDGTAR---QRPVAVEALLARIHHH-HLLTMAD--CSS-VDDGLACQRLGADIIGTTMSGYTTP 163 (232)
T ss_dssp HHHHHHHHHHTCSEEEEECCSS---CCSSCHHHHHHHHHHT-TCEEEEE--CCS-HHHHHHHHHTTCSEEECTTTTSSSS
T ss_pred HHHHHHHHHcCCCEEEECcccc---CCHHHHHHHHHHHHHC-CCEEEEe--CCC-HHHHHHHHhCCCCEEEEcCccCCCC
Confidence 3557788889999998875432 1112335677777764 4554442 233 33667788999999964 32 11
Q ss_pred --cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 149 --SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 149 --~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
....++ +.++.+++.++ +-++..-=...+.+..++. .+|-|++.
T Consensus 164 ~~~~~~~~-~~i~~l~~~~i-pvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 164 DTPEEPDL-PLVKALHDAGC-RVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp SCCSSCCH-HHHHHHHHTTC-CEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCCCCCH-HHHHHHHhcCC-cEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 011233 55666776633 3344433235666777666 48988873
|
| >3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp} | Back alignment and structure |
|---|
Probab=83.83 E-value=6.7 Score=33.83 Aligned_cols=113 Identities=12% Similarity=0.029 Sum_probs=65.4
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEE--ccc-c-
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSV--HCE-Q- 148 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itv--h~E-a- 148 (281)
.++++.+.+.|+|.+.+|.... .+-..-.++++.+++. +.++.+. +.+ .+..+.+.++|+|+|.+ |.- .
T Consensus 91 ~~~i~~~~~aGad~I~l~~~~~---~~p~~l~~~i~~~~~~-g~~v~~~--v~t-~eea~~a~~~Gad~Ig~~~~g~t~~ 163 (229)
T 3q58_A 91 LQDVDALAQAGADIIAFDASFR---SRPVDIDSLLTRIRLH-GLLAMAD--CST-VNEGISCHQKGIEFIGTTLSGYTGP 163 (229)
T ss_dssp HHHHHHHHHHTCSEEEEECCSS---CCSSCHHHHHHHHHHT-TCEEEEE--CSS-HHHHHHHHHTTCSEEECTTTTSSSS
T ss_pred HHHHHHHHHcCCCEEEECcccc---CChHHHHHHHHHHHHC-CCEEEEe--cCC-HHHHHHHHhCCCCEEEecCccCCCC
Confidence 3567788889999998875432 1112335677777764 4554442 233 33667788999999954 321 1
Q ss_pred --cccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 149 --SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 149 --~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
....++ +.++.+++.++ +-++-.-=...+.+..++. .+|-|++.
T Consensus 164 ~~~~~~~~-~li~~l~~~~i-pvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 164 ITPVEPDL-AMVTQLSHAGC-RVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp CCCSSCCH-HHHHHHHTTTC-CEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CcCCCCCH-HHHHHHHHcCC-CEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 001233 55666666533 3344332234566666665 48888773
|
| >1r0m_A N-acylamino acid racemase; isomerase; 1.30A {Deinococcus radiodurans} SCOP: c.1.11.2 d.54.1.1 PDB: 1xpy_A* 1xs2_A 2ggj_A 2ggi_A 2ggh_A* 2ggg_A* 2fkp_A | Back alignment and structure |
|---|
Probab=83.82 E-value=2.4 Score=38.98 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=72.9
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
.+|+.+.+ .+.+.|.+.+-+|.. +..++ +.++++|+. ++.+.+..|.....+. ..+++. +++|
T Consensus 147 ~~~~~~~~~a~~~~~~G~~~iKik~~--~~~d~-~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i--- 219 (375)
T 1r0m_A 147 ADEQATVDLVRRHVEQGYRRIKLKIK--PGWDV-QPVRATREAFPDIRLTVDANSAYTLAD-AGRLRQLDEYDLTYI--- 219 (375)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB--TTBSH-HHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHTTGGGCCSCE---
T ss_pred CCHHHHHHHHHHHHHhcccEEEEecC--hHHHH-HHHHHHHHHcCCCeEEEeCCCCCCHHH-HHHHHHHHhCCCcEE---
Confidence 36766544 456789999998863 22333 456777764 6788888887766665 555443 3333
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+..+++.| +|++.+=
T Consensus 220 -------EqP~~~~d~~~~~~l~~~~-----~ipIa~dE~~~~~~~~~~~i~~~~~d~v~ik 269 (375)
T 1r0m_A 220 -------EQPLAWDDLVDHAELARRI-----RTPLCLDESVASASDARKALALGAGGVINLK 269 (375)
T ss_dssp -------ECCSCTTCSHHHHHHHHHC-----SSCEEESTTCCSHHHHHHHHHHTSCSEEEEC
T ss_pred -------ECCCCcccHHHHHHHHHhC-----CCCEEecCccCCHHHHHHHHHhCCCCEEEEC
Confidence 2556555555566666543 47899999986 77888887766 7888773
|
| >3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0 | Back alignment and structure |
|---|
Probab=83.77 E-value=2.9 Score=37.39 Aligned_cols=73 Identities=11% Similarity=0.049 Sum_probs=49.0
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE-ecCCChhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV-DGGVGPKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V-DGGI~~e~i~~~~~aGAD~~Vv 253 (281)
.|.+..+.|... ++.|-+.+ +|++.+. .++.|+.+|+.. +++|.. |+-+++..+.++..+|||.+.+
T Consensus 80 dp~~~A~~y~~~GA~~IsVlt-d~~~f~G-----s~~~L~~ir~~v-----~lPVl~Kdfi~d~~qi~ea~~~GAD~VlL 148 (272)
T 3tsm_A 80 DPPALAKAYEEGGAACLSVLT-DTPSFQG-----APEFLTAARQAC-----SLPALRKDFLFDPYQVYEARSWGADCILI 148 (272)
T ss_dssp CHHHHHHHHHHTTCSEEEEEC-CSTTTCC-----CHHHHHHHHHTS-----SSCEEEESCCCSTHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEec-cccccCC-----CHHHHHHHHHhc-----CCCEEECCccCCHHHHHHHHHcCCCEEEE
Confidence 445666666554 88887766 4554321 344555555442 355544 6667788999999999999999
Q ss_pred cccccC
Q 023494 254 GSAVFG 259 (281)
Q Consensus 254 GSaIf~ 259 (281)
+.+...
T Consensus 149 i~a~L~ 154 (272)
T 3tsm_A 149 IMASVD 154 (272)
T ss_dssp ETTTSC
T ss_pred cccccC
Confidence 987764
|
| >1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A | Back alignment and structure |
|---|
Probab=83.74 E-value=22 Score=31.76 Aligned_cols=174 Identities=15% Similarity=0.114 Sum_probs=95.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcC--CCCCeeEEEEecChhh---HHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~a 137 (281)
.|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+. -..|+.++.-.++..+ +.+.+.++
T Consensus 30 iD~~~l~~lv~~li~~Gv~gl~v---~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~ 106 (306)
T 1o5k_A 30 LDLESYERLVRYQLENGVNALIV---LGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKL 106 (306)
T ss_dssp ECHHHHHHHHHHHHHTTCCEEEE---SSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCEEEe---CccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhc
Confidence 56677888899999999997633 233222223333 334443332 2478888887777654 44556788
Q ss_pred CCCEEEEcccc---cccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhh-ccCCEEEEEeecCCCCCCccch
Q 023494 138 GADIVSVHCEQ---SSTIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVL-DVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 138 GAd~Itvh~Ea---~~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
|||.+.+..=. .+.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.++. +...++.+= +. .|
T Consensus 107 Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnIvgiK--ds--sg----- 177 (306)
T 1o5k_A 107 GANGVLVVTPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAADLKNVVGIX--EA--NP----- 177 (306)
T ss_dssp TCSEEEEECCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEE--EC--CC-----
T ss_pred CCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHHhCCCEEEEe--CC--CC-----
Confidence 99988775321 112233344444333 355555544442 3556677776 433444321 11 11
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++..+..+.++.+ =.|-. +.+-.....|++.+|.|.+
T Consensus 178 -d~~~~~~~~~~~~~~~~~f~v--~~G~d-~~~l~~l~~G~~G~is~~a 222 (306)
T 1o5k_A 178 -DIDQIDRTVSLTKQARSDFMV--WSGND-DRTFYLLCAGGDGVISVVS 222 (306)
T ss_dssp -CHHHHHHHHHHHHHHCTTCEE--EESSG-GGHHHHHHHTCCEEEESGG
T ss_pred -CHHHHHHHHHhcCCCCCcEEE--EECcH-HHHHHHHHCCCCEEEecHH
Confidence 144555555554421113443 33333 3466668899999999955
|
| >2o56_A Putative mandelate racemase; dehydratase, structural genomics, protein structure initiati 2; 2.00A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=83.74 E-value=1.9 Score=40.14 Aligned_cols=113 Identities=12% Similarity=0.082 Sum_probs=73.6
Q ss_pred ChhhHHH---HHHHcCCCEEEEccc----cc--------------ccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHH
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCE----QS--------------STIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAI 181 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~E----a~--------------~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~ 181 (281)
+|+.+.+ .+.+.|.+.+=+|.. .. ......+.++++|+ . ++.+.+..|.....+..
T Consensus 152 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~~~G~~~~s~~~~~~~~~~~~~~~e~v~avR~a~G~d~~l~vDan~~~~~~~a 231 (407)
T 2o56_A 152 EPEQYAQAALTAVSEGYDAIKVDTVAMDRHGNWNQQNLNGPLTDKILRLGYDRMAAIRDAVGPDVDIIAEMHAFTDTTSA 231 (407)
T ss_dssp SHHHHHHHHHHHHHTTCSEEEECCSSBCTTSCBSCSCCCSSCCHHHHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEEcccccCCcCccccCcccCCCchhHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHH
Confidence 6776654 356789999999852 00 01224467777777 3 46677788877777665
Q ss_pred HHhhcc-----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 182 ECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 182 ~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.++++. +++| .|++.+..++-.+++++.. +++|..|+.+. ++.+.++++.| +|++.+
T Consensus 232 ~~~~~~l~~~~i~~i----------E~P~~~~~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 295 (407)
T 2o56_A 232 IQFGRMIEELGIFYY----------EEPVMPLNPAQMKQVADKV-----NIPLAAGERIYWRWGYRPFLENGSLSVIQP 295 (407)
T ss_dssp HHHHHHHGGGCCSCE----------ECSSCSSSHHHHHHHHHHC-----CSCEEECTTCCHHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHHhcCCCEE----------eCCCChhhHHHHHHHHHhC-----CCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 555443 3333 2455555566666666543 47999999997 78888888777 677754
|
| >2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A | Back alignment and structure |
|---|
Probab=83.68 E-value=23 Score=31.31 Aligned_cols=167 Identities=14% Similarity=0.128 Sum_probs=85.3
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcCCCCCeeEEEEecChhh---HHHHHHHcC
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTDLPLDVHLMIVEPEQ---RVPDFIKAG 138 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~t~~~idaHLmv~dp~~---~i~~~~~aG 138 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+..+. +.++.-.++..+ +.+.+.++|
T Consensus 15 ~iD~~~l~~lv~~li~~Gv~gl~v---~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg~~~t~~ai~la~~A~~~G 90 (286)
T 2r91_A 15 RLDPELFANHVKNITSKGVDVVFV---AGTTGLGPALSLQEKMELTDAATSAARR-VIVQVASLNADEAIALAKYAESRG 90 (286)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEE---TSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECCCSSHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHHHCCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeCCCCHHHHHHHHHHHHhcC
Confidence 367778889999999999987633 243222223333 334443443333 556655555543 444566788
Q ss_pred CCEEEEcccc----cccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccchh
Q 023494 139 ADIVSVHCEQ----SSTIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 139 Ad~Itvh~Ea----~~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
||.+.+..-. .+.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.+ .+ .++.+ |.-..
T Consensus 91 adavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~-~p--nivgi----------Kds~g 157 (286)
T 2r91_A 91 AEAVASLPPYYFPRLSERQIAKYFRDLCSAVSIPVFLYNYPAAVGRDVDARAAKE-LG--CIRGV----------KDTNE 157 (286)
T ss_dssp CSEEEECCSCSSTTCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSSCCCHHHHHH-HS--CEEEE----------EECCS
T ss_pred CCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeChhhcCCCCCHHHHHh-cC--CEEEE----------EeCCC
Confidence 8887775221 112223333333332 355555543442 23344444 22 12211 11111
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++ .+ .++.+ .. |-. +.+-.....|++.+|.|.+
T Consensus 158 d~~~~~~~~~-~~---~~f~v-~~-G~d-~~~~~~l~~G~~G~is~~a 198 (286)
T 2r91_A 158 SLAHTLAYKR-YL---PQARV-YN-GSD-SLVFASFAVRLDGVVASSA 198 (286)
T ss_dssp CHHHHHHHHH-HC---TTSEE-EE-CCG-GGHHHHHHTTCSEECCGGG
T ss_pred CHHHHHHHHh-cC---CCEEE-EE-ccH-HHHHHHHHcCCCEEEecHH
Confidence 2445555555 32 23544 23 333 3455678899999999965
|
| >2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4 | Back alignment and structure |
|---|
Probab=83.50 E-value=1.8 Score=38.07 Aligned_cols=138 Identities=11% Similarity=0.008 Sum_probs=71.6
Q ss_pred cccccCCCCCceEeEEEeccCc-cCHHHHHHHHHHcCCCeEEEEeeeC-cccccccCCHHHHHHcCcCCCCCeeEEEEec
Q 023494 48 ARVDKFSKSDIIVSPSILSANF-AKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPVTDLPLDVHLMIV 125 (281)
Q Consensus 48 ~~~~~~~~~~~~i~pSila~D~-~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~ 125 (281)
+++-.-+.+..+|+-+.++.-. ..+++.++.+.+.|.+.+++...+. .+.+ .......+++.-+..++.+.++-...
T Consensus 13 ~~~~~~~~~~~klgi~~~~~~~~~~~~~~l~~a~~~G~~~vEl~~~~~~~~~~-~~~~~~~~~~~l~~~gl~i~~~~~~~ 91 (296)
T 2g0w_A 13 MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLRAENYVDALA-AGLTDEDMLRILDEHNMKVTEVEYIT 91 (296)
T ss_dssp ---------CCCEEECGGGGTTTSCHHHHHHHHHHTTCSEEEEEHHHHHHHHH-TTCCHHHHHHHHHHTTCEEEEEECBC
T ss_pred cccCCCCcCCCCceeechhcCCCCCHHHHHHHHHHcCCCEEEeCHHHHHHHHh-cCCcHHHHHHHHHHcCCceEeehhhh
Confidence 3333333444567777776644 7899999999999999998864211 0101 11233334443333566555432222
Q ss_pred -----Chh---------hHHHHHHHcCCCEEEEcccc-cc----cccHHHHHHHHHHcCCcEEEEECCCC---CHHHHHH
Q 023494 126 -----EPE---------QRVPDFIKAGADIVSVHCEQ-SS----TIHLHRTLNQIKDLGAKAGVVLNPAT---SLSAIEC 183 (281)
Q Consensus 126 -----dp~---------~~i~~~~~aGAd~Itvh~Ea-~~----~~~i~~~l~~ik~~G~k~Glai~p~t---~ie~~~~ 183 (281)
+|. +.++.+.+.|++.|.++.-. .+ .+.+.++.+.+ +|+++++--.+.+ ..+.+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~g~~~~~~~~~~~~~l~~l~~~a--~Gv~l~lE~~~~~~~~~~~~~~~ 169 (296)
T 2g0w_A 92 QWGTAEDRTAEQQKKEQTTFHMARLFGVKHINCGLLEKIPEEQIIVALGELCDRA--EELIIGLEFMPYSGVADLQAAWR 169 (296)
T ss_dssp CCSSTTTCCHHHHHHHHHHHHHHHHHTCCEEEECCCSCCCHHHHHHHHHHHHHHH--TTSEEEEECCTTSSSCSHHHHHH
T ss_pred ccccCChHHHHHHHHHHHHHHHHHHcCCCEEEEcCCCCCCHHHHHHHHHHHHHHh--cCCEEEEEecCCCCCCCHHHHHH
Confidence 221 34556778899999886421 00 11233444444 6888887654432 3344555
Q ss_pred hhccC
Q 023494 184 VLDVV 188 (281)
Q Consensus 184 ~l~~v 188 (281)
+++.+
T Consensus 170 l~~~v 174 (296)
T 2g0w_A 170 VAEAC 174 (296)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
|
| >3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=83.50 E-value=2.6 Score=36.09 Aligned_cols=131 Identities=15% Similarity=0.116 Sum_probs=74.6
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeE-EEEe--cChh------
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDV-HLMI--VEPE------ 128 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~ida-HLmv--~dp~------ 128 (281)
++++-+-.+..-..+++.++.+.+.|.+.+++...+.+..+ -....+.++++-+..++.+.. |.-. .+|.
T Consensus 4 Mk~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~~~~ 82 (281)
T 3u0h_A 4 MEPCLHPTLVDETSLVLYLDLARETGYRYVDVPFHWLEAEA-ERHGDAAVEAMFQRRGLVLANLGLPLNLYDSEPVFLRE 82 (281)
T ss_dssp CEEEECGGGTTCCCHHHHHHHHHHTTCSEECCCHHHHHHHH-HHHCHHHHHHHHHTTTCEECCEECCSCTTSCHHHHHHH
T ss_pred chhhhcchhccCCCHHHHHHHHHHcCCCEEEecHHHHHHHh-cccCHHHHHHHHHHcCCceEEecccccccCCCHHHHHH
Confidence 45666666666679999999999999999887543321000 012333344333334554432 2211 1221
Q ss_pred -----hHHHHHHHcCCCEEEEcccccc-----------cccHHHHHHHHHHcCCcEEEEECC-----------CCCHHHH
Q 023494 129 -----QRVPDFIKAGADIVSVHCEQSS-----------TIHLHRTLNQIKDLGAKAGVVLNP-----------ATSLSAI 181 (281)
Q Consensus 129 -----~~i~~~~~aGAd~Itvh~Ea~~-----------~~~i~~~l~~ik~~G~k~Glai~p-----------~t~ie~~ 181 (281)
+.++.+.+.|+..|.++.-... .+.+.++.+.++++|+++++--.+ -...+.+
T Consensus 83 ~~~~~~~i~~A~~lG~~~v~~~~~p~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~~~~~ 162 (281)
T 3u0h_A 83 LSLLPDRARLCARLGARSVTAFLWPSMDEEPVRYISQLARRIRQVAVELLPLGMRVGLEYVGPHHLRHRRYPFVQSLADL 162 (281)
T ss_dssp HHTHHHHHHHHHHTTCCEEEEECCSEESSCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCGGGCCSSEECCCSHHHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEeecCCCCCcchhhHHHHHHHHHHHHHHHHHcCCEEEEEeccccccccccccccCCHHHH
Confidence 2456677889999986532100 123455666677889998886543 1245566
Q ss_pred HHhhccCC
Q 023494 182 ECVLDVVD 189 (281)
Q Consensus 182 ~~~l~~vD 189 (281)
..+++.++
T Consensus 163 ~~l~~~v~ 170 (281)
T 3u0h_A 163 KTFWEAIG 170 (281)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHcC
Confidence 66666543
|
| >1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A | Back alignment and structure |
|---|
Probab=83.47 E-value=5 Score=34.18 Aligned_cols=122 Identities=13% Similarity=0.181 Sum_probs=69.9
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCC-HHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc-
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIG-PLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA- 137 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G-~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a- 137 (281)
+-.-++--|. ++.++.+.++|+|++++= .-+. ... ...++.+++. +..+-+.+-..+|...++.+.+.
T Consensus 67 ~~v~lmv~d~---~~~i~~~~~agad~v~vH-----~~~~-~~~~~~~~~~i~~~-g~~igv~~~p~t~~e~~~~~~~~~ 136 (228)
T 1h1y_A 67 LDCHLMVTNP---SDYVEPLAKAGASGFTFH-----IEVS-RDNWQELIQSIKAK-GMRPGVSLRPGTPVEEVFPLVEAE 136 (228)
T ss_dssp EEEEEESSCG---GGGHHHHHHHTCSEEEEE-----GGGC-TTTHHHHHHHHHHT-TCEEEEEECTTSCGGGGHHHHHSS
T ss_pred EEEEEEecCH---HHHHHHHHHcCCCEEEEC-----CCCc-ccHHHHHHHHHHHc-CCCEEEEEeCCCCHHHHHHHHhcC
Confidence 3344454565 445777778899999652 1121 123 4668887764 56666545435666666777776
Q ss_pred -CCCEEEEccccc-----c-cccHHHHHHHHHHc--CCcEEEE--ECCCCCHHHHHHhhc-cCCEEEEEe
Q 023494 138 -GADIVSVHCEQS-----S-TIHLHRTLNQIKDL--GAKAGVV--LNPATSLSAIECVLD-VVDLVLIMS 195 (281)
Q Consensus 138 -GAd~Itvh~Ea~-----~-~~~i~~~l~~ik~~--G~k~Gla--i~p~t~ie~~~~~l~-~vD~Ilvms 195 (281)
++|+|.+..-.. . .....+.++.+|+. ++.+.+. |+++ .+.+++. .+|.+.+.+
T Consensus 137 ~~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~~~pi~v~GGI~~~----ni~~~~~aGaD~vvvGs 202 (228)
T 1h1y_A 137 NPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYPSLDIEVDGGLGPS----TIDVAASAGANCIVAGS 202 (228)
T ss_dssp SCCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCTTSEEEEESSCSTT----THHHHHHHTCCEEEESH
T ss_pred CCCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcCCCCEEEECCcCHH----HHHHHHHcCCCEEEECH
Confidence 899998843210 0 12233446666664 4555544 5543 3444444 689988743
|
| >1vhn_A Putative flavin oxidoreducatase; structural genomics, unknown function; HET: FMN; 1.59A {Thermotoga maritima} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=83.46 E-value=2.1 Score=38.58 Aligned_cols=133 Identities=16% Similarity=0.236 Sum_probs=83.7
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEee--------e--C-cccccccCCHHHHHHcCcCCCCCeeEEEEe-
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVM--------D--G-RFVPNITIGPLVVDALRPVTDLPLDVHLMI- 124 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDIm--------D--G-~fvpn~~~G~~~I~~ir~~t~~~idaHLmv- 124 (281)
...+...|+.-|+..+.++.+.+.+. +|.|.+-.- | | .+.....+-.++++++|+..+.|+.+.+-.
T Consensus 58 ~~~~~~QL~g~~~~~~~~aa~~a~~~-~d~Iein~gcP~~~~r~~~~G~~l~~~~~~~~eiv~~v~~~~~~pv~vKir~G 136 (318)
T 1vhn_A 58 ERNVAVQIFGSEPNELSEAARILSEK-YKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRKSVSGKFSVKTRLG 136 (318)
T ss_dssp CTTEEEEEECSCHHHHHHHHHHHTTT-CSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHHHCSSEEEEEEESC
T ss_pred CCeEEEEeCCCCHHHHHHHHHHHHHh-CCEEEEECCCCcHhcCCCCcccchhhCHHHHHHHHHHHHHhhCCCEEEEecCC
Confidence 34678888877888888888999888 888655421 1 1 011112334466788887767787776543
Q ss_pred ---cChhhHHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc--cCCEEEE
Q 023494 125 ---VEPEQRVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD--VVDLVLI 193 (281)
Q Consensus 125 ---~dp~~~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~--~vD~Ilv 193 (281)
.++.++++.+.++|+|+|++|.-.. ...+. +.+..+++ ++. |..+-+ ...+.+.+.+. .+|.|.+
T Consensus 137 ~~~~~~~~~a~~l~~~G~d~i~v~g~~~~~~~~~~~~~-~~i~~i~~-~ip--Vi~~GgI~s~~da~~~l~~~gad~V~i 212 (318)
T 1vhn_A 137 WEKNEVEEIYRILVEEGVDEVFIHTRTVVQSFTGRAEW-KALSVLEK-RIP--TFVSGDIFTPEDAKRALEESGCDGLLV 212 (318)
T ss_dssp SSSCCHHHHHHHHHHTTCCEEEEESSCTTTTTSSCCCG-GGGGGSCC-SSC--EEEESSCCSHHHHHHHHHHHCCSEEEE
T ss_pred CChHHHHHHHHHHHHhCCCEEEEcCCCccccCCCCcCH-HHHHHHHc-CCe--EEEECCcCCHHHHHHHHHcCCCCEEEE
Confidence 2333578888999999999995321 11122 45566665 433 333444 46677777776 4999977
Q ss_pred E
Q 023494 194 M 194 (281)
Q Consensus 194 m 194 (281)
.
T Consensus 213 G 213 (318)
T 1vhn_A 213 A 213 (318)
T ss_dssp S
T ss_pred C
Confidence 3
|
| >3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A* | Back alignment and structure |
|---|
Probab=83.42 E-value=18 Score=32.63 Aligned_cols=135 Identities=15% Similarity=0.138 Sum_probs=76.3
Q ss_pred HHHHHHcCCCEEEEccccccc--ccHHHHHHHHH-HcCCcEEE-EECCCCCHHHHHHhhc-----cCCEEEEEeecCCCC
Q 023494 131 VPDFIKAGADIVSVHCEQSST--IHLHRTLNQIK-DLGAKAGV-VLNPATSLSAIECVLD-----VVDLVLIMSVNPGFG 201 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~~--~~i~~~l~~ik-~~G~k~Gl-ai~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~ 201 (281)
++.+.+.+.|.|+|-.-+... ....++...++ +.|+.+.. ..+-+.+.+.++.++. .++-|+.++-+|-.+
T Consensus 45 ~~~l~~l~p~fvsVT~gagg~~r~~t~~~a~~i~~~~g~~~v~Hltc~~~~~~~l~~~L~~~~~~GI~nILaLrGDpp~~ 124 (304)
T 3fst_A 45 IDRLSSLKPKFVSVTYGANSGERDRTHSIIKGIKDRTGLEAAPHLTCIDATPDELRTIARDYWNNGIRHIVALRGDLPPG 124 (304)
T ss_dssp HHHHHTTCCSEEEECCCTTSSCHHHHHHHHHHHHHHHCCCEEEEEESTTSCHHHHHHHHHHHHHTTCCEEEEECCCCC--
T ss_pred HHHHhcCCCCEEEEeeCCCCcchhHHHHHHHHHHHHhCCCeeEEeecCCCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC
Confidence 566777899998888665321 11223445555 47998887 3344556666666543 377888888776333
Q ss_pred C-CccchhHHHHHHHHHHHhhhcCCCCeEEEecC----C---Ch----hcHHHHHHcCCcEEEEcccccCCCCHHHHHHH
Q 023494 202 G-QSFIESQVKKISDLRRMCLEKGVNPWIEVDGG----V---GP----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKG 269 (281)
Q Consensus 202 G-Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG----I---~~----e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~ 269 (281)
+ ..| .+..+-++.+|++ .++.|.|.|= - +. +.+++=+++|||.+| =-.+|..+...+..++
T Consensus 125 ~~~~~-~~A~dLv~~ir~~-----~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~KvdAGAdf~i-TQ~ffD~~~~~~f~~~ 197 (304)
T 3fst_A 125 SGKPE-MYASDLVTLLKEV-----ADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAI-TQFFFDVESYLRFRDR 197 (304)
T ss_dssp ----C-CCHHHHHHHHHHH-----CCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEE-ECCCSCHHHHHHHHHH
T ss_pred CCCCC-CCHHHHHHHHHHc-----CCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEE-eCccCCHHHHHHHHHH
Confidence 3 234 4566677777665 1467777642 1 11 133333679999754 4455654444444444
Q ss_pred HHH
Q 023494 270 IKT 272 (281)
Q Consensus 270 l~~ 272 (281)
+++
T Consensus 198 ~r~ 200 (304)
T 3fst_A 198 CVS 200 (304)
T ss_dssp HHH
T ss_pred HHh
Confidence 443
|
| >3e02_A Uncharacterized protein DUF849; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.90A {Burkholderia xenovorans LB400} | Back alignment and structure |
|---|
Probab=83.32 E-value=11 Score=34.30 Aligned_cols=194 Identities=15% Similarity=0.210 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeee---CcccccccCCHHHHHHcCcCCCCCeeEEEEe-----cChhhHHHHHHHcCCCEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMD---GRFVPNITIGPLVVDALRPVTDLPLDVHLMI-----VEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImD---G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv-----~dp~~~i~~~~~aGAd~I 142 (281)
.+.++...+.++|+..+|+-+-| |.=......--++++.||+.++ +.+.+-+ .+|+.-+..+.+...|..
T Consensus 33 Eia~~A~~~~~AGAaivHlHvRdp~dG~ps~d~~~~~e~~~~IR~~~d--~iI~~TTgg~~~~~~eerla~~~~~~Pe~a 110 (311)
T 3e02_A 33 EIVKEGVAAAEAGAAMLHLHARDPLNGRPSQDPDLFMRFLPQLKERTD--AILNITTGGGLGMSLDERLAPARAARPEVA 110 (311)
T ss_dssp HHHHHHHHHHHHTCSEEEECEECTTTCCEECCHHHHTTTHHHHHHHCC--CEEEECSSCSTTCCHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHcCCcEEEEeecCCCCCCcCCCHHHHHHHHHHHHHhCC--cEEEECCCCCCCCCHHHHHHHHHhcCCCee
Confidence 45555567778999999998877 5312222233456777887654 3333333 234444444445578888
Q ss_pred EEccccc---------------------------------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--
Q 023494 143 SVHCEQS---------------------------------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-- 187 (281)
Q Consensus 143 tvh~Ea~---------------------------------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-- 187 (281)
++-.-.. +...+.++++.++++|+++-+.+-....+..+..+++.
T Consensus 111 Sln~gs~Nf~~~~~~~~~~~~~~~~e~~~~~~~~d~v~~n~~~~i~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl 190 (311)
T 3e02_A 111 SMNMGSLNFNISQAAAKFDTFKFDWERPYLAGTRDFILSNTFSQIERGMTELGASGTRFEFECYDVGHLYNLAHFVDRKL 190 (311)
T ss_dssp EEECSCEECBCGGGGGGCSCCSSTTHHHHHHHGGGCEECCCHHHHHHHHHHHHTTTCEEEEEECSHHHHHHHHHHHHTTS
T ss_pred eecCCCceeccccchhhccccccccchhhcccCCCceecCCHHHHHHHHHHHHHcCCeEEEEEEcHHHHHHHHHHHHcCC
Confidence 7652110 12258889999999999999988644455556555543
Q ss_pred ----CCEEEEEeecCCCCCCccchhHHHHHHHH-HHHhhhcCCCCeEEEecCCChh---cHHHHHHcCCcEEEEc--ccc
Q 023494 188 ----VDLVLIMSVNPGFGGQSFIESQVKKISDL-RRMCLEKGVNPWIEVDGGVGPK---NAYKVIEAGANALVAG--SAV 257 (281)
Q Consensus 188 ----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l-r~l~~~~~~~~~I~VDGGI~~e---~i~~~~~aGAD~~VvG--SaI 257 (281)
..+-++|++. +|++-.++.+.-+.+. .++++. +....| -|+... -....+..|-+ +=+| =.+
T Consensus 191 ~~~p~~~~~vlGv~---~g~~~~~~~L~~~~~~~~~~~~~---~~~wsv-~~~Gr~~~p~~~~A~~~GGh-vRVGlEDnl 262 (311)
T 3e02_A 191 VEPPFFLQCVFGIL---GGIGADPENLLHMRTIADRLFGQ---DYYLSV-LAAGRHQMPFVTMSAILGGN-VRVGLEDSL 262 (311)
T ss_dssp SCSCEEEEEEECCB---TSCCSCHHHHHHHHHHHHHHHTT---SEEEEE-EECGGGHHHHHHHHHHTTCE-EEESTTTCS
T ss_pred CCCCeEEEEEecCC---CCCCCCHHHHHHHHHHHHhhCCC---CCceEE-EeeChhhHHHHHHHHHcCCC-eEEccCcce
Confidence 2233445443 4566666665544322 244432 233333 233333 34456888887 5556 224
Q ss_pred cC-----CCCHHHHHHHHHHhc
Q 023494 258 FG-----AKDYAEAIKGIKTSK 274 (281)
Q Consensus 258 f~-----a~dp~~~~~~l~~~~ 274 (281)
+- +++-.+.++++.+.+
T Consensus 263 ~~~~G~lA~sNaelV~~~~~i~ 284 (311)
T 3e02_A 263 YSGKGQLATSNAEQVRKIRRII 284 (311)
T ss_dssp EEETTEECSCHHHHHHHHHHHH
T ss_pred ecCCCCCCCCHHHHHHHHHHHH
Confidence 42 234445555555543
|
| >2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A* | Back alignment and structure |
|---|
Probab=83.23 E-value=9.4 Score=34.72 Aligned_cols=91 Identities=15% Similarity=0.211 Sum_probs=51.0
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccc---------cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEE-
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNI---------TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVS- 143 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~---------~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~It- 143 (281)
+..+.+.+.|+|+|-|... ..-|.. .-=..+|+.|++.++.|+-+ =+.+|. .++.+.++||++|-
T Consensus 37 ~~a~~~v~~GAdIIDIGge--STrPGa~~v~~~eE~~Rv~pvI~~l~~~~~vpiSI--DT~~~~-Va~aAl~aGa~iIND 111 (314)
T 2vef_A 37 QQARKLIAEGASMLDIGGE--STRPGSSYVEIEEEIQRVVPVIKAIRKESDVLISI--DTWKSQ-VAEAALAAGADLVND 111 (314)
T ss_dssp HHHHHHHHTTCSEEEEECC--C-----CHHHHHHHHHHHHHHHHHHHHHCCCEEEE--ECSCHH-HHHHHHHTTCCEEEE
T ss_pred HHHHHHHHCCCCEEEECCC--cCCCCCCCCCHHHHHHHHHHHHHHHHhhCCceEEE--eCCCHH-HHHHHHHcCCCEEEE
Confidence 3345566789998644311 111311 00123455566555555544 345654 67788899999984
Q ss_pred EcccccccccHHHHHHHHHHcCCcEEEEEC
Q 023494 144 VHCEQSSTIHLHRTLNQIKDLGAKAGVVLN 173 (281)
Q Consensus 144 vh~Ea~~~~~i~~~l~~ik~~G~k~Glai~ 173 (281)
+..+.. .+ +.+..++++|+.+.+.-+
T Consensus 112 Vsg~~~-d~---~m~~v~a~~~~~vvlmh~ 137 (314)
T 2vef_A 112 ITGLMG-DE---KMPHVVAEARAQVVIMFN 137 (314)
T ss_dssp TTTTCS-CT---THHHHHHHHTCEEEEECC
T ss_pred CCCCCC-Ch---HHHHHHHHcCCCEEEEec
Confidence 444421 12 456677889988777644
|
| >2zc8_A N-acylamino acid racemase; octamer, TIM beta/alpha-barrel, metal-binding, metal binding; 1.95A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=83.20 E-value=2.6 Score=38.65 Aligned_cols=110 Identities=18% Similarity=0.216 Sum_probs=71.7
Q ss_pred cChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhcc-----CCEEEEE
Q 023494 125 VEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLDV-----VDLVLIM 194 (281)
Q Consensus 125 ~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~~-----vD~Ilvm 194 (281)
.+|+.+.+ .+.+.|.+.+-+|.. +..++ +.++++|+. ++.+.+..|.....+. .++++. +++|
T Consensus 140 ~~~~~~~~~a~~~~~~G~~~iKik~~--~~~d~-~~v~avr~a~~~~~l~vDan~~~~~~~-~~~~~~l~~~~i~~i--- 212 (369)
T 2zc8_A 140 PSVEDTLRVVERHLEEGYRRIKLKIK--PGWDY-EVLKAVREAFPEATLTADANSAYSLAN-LAQLKRLDELRLDYI--- 212 (369)
T ss_dssp SSHHHHHHHHHHHHHTTCSCEEEECB--TTBSH-HHHHHHHHHCTTSCEEEECTTCCCGGG-HHHHHGGGGGCCSCE---
T ss_pred CCHHHHHHHHHHHHHhhhheeeeecC--hhHHH-HHHHHHHHHcCCCeEEEecCCCCCHHH-HHHHHHHHhCCCcEE---
Confidence 36766544 346789999998863 22333 456777764 6778888887766665 555443 2333
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.|++.+..++-.+++++.. +++|+.|+.+. .+.+..+++.| +|++.+
T Consensus 213 -------EqP~~~~d~~~~~~l~~~~-----~ipIa~dE~~~~~~~~~~~i~~~~~d~v~i 261 (369)
T 2zc8_A 213 -------EQPLAYDDLLDHAKLQREL-----STPICLDESLTGAEKARKAIELGAGRVFNV 261 (369)
T ss_dssp -------ECCSCTTCSHHHHHHHHHC-----SSCEEESTTCCSHHHHHHHHHHTCCSEEEE
T ss_pred -------ECCCCcccHHHHHHHHhhC-----CCCEEEcCccCCHHHHHHHHHhCCCCEEEE
Confidence 2555555555566665542 47899999986 77888888777 788776
|
| >1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A* | Back alignment and structure |
|---|
Probab=83.16 E-value=14 Score=34.12 Aligned_cols=172 Identities=13% Similarity=0.138 Sum_probs=97.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc------cCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcC
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI------TIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAG 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~------~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aG 138 (281)
|.....+.++.+.++|++.+-. +.|-|.. .+|.+.++.+++. .++++.. -+.||. -++.+.+.
T Consensus 118 s~e~a~~~a~~~k~aGa~~vr~----q~fKprTs~~~f~glg~egl~~l~~~~~e~Gl~~~t--e~~d~~-~~~~l~~~- 189 (350)
T 1vr6_A 118 GREMLMETAHFLSELGVKVLRG----GAYKPRTSPYSFQGLGEKGLEYLREAADKYGMYVVT--EALGED-DLPKVAEY- 189 (350)
T ss_dssp CHHHHHHHHHHHHHTTCCEEEC----BSCCCCCSTTSCCCCTHHHHHHHHHHHHHHTCEEEE--ECSSGG-GHHHHHHH-
T ss_pred CHHHHHHHHHHHHHcCCCeeee----eEEeCCCChHhhcCCCHHHHHHHHHHHHHcCCcEEE--EeCCHH-HHHHHHHh-
Confidence 4444556667778899987544 4555532 2355666666553 5677766 334544 34555666
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc------cCCEEEEE---eecCCCCCCccchhH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD------VVDLVLIM---SVNPGFGGQSFIESQ 209 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~------~vD~Ilvm---sV~pG~~GQ~f~~~~ 209 (281)
+|++-+.... ..+ ..+++++-+.|+-+++.-...-.++++..-++ .-++++.. +.+|++.-....
T Consensus 190 vd~lkIgAr~--~~n-~~LL~~va~~~kPVilk~G~~~tl~ei~~Ave~i~~~GN~~viLceRG~~typ~~~~~~vd--- 263 (350)
T 1vr6_A 190 ADIIQIGARN--AQN-FRLLSKAGSYNKPVLLKRGFMNTIEEFLLSAEYIANSGNTKIILCERGIRTFEKATRNTLD--- 263 (350)
T ss_dssp CSEEEECGGG--TTC-HHHHHHHHTTCSCEEEECCTTCCHHHHHHHHHHHHHTTCCCEEEEECCBCCSCCSSSSBCC---
T ss_pred CCEEEECccc--ccC-HHHHHHHHccCCcEEEcCCCCCCHHHHHHHHHHHHHCCCCeEEEEeCCCCCCCCcChhhhh---
Confidence 8999999874 233 34677777889999988877633433333222 13566531 123443222222
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEec----CCC---hhcHHHHHHcCCcEEEEccccc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDG----GVG---PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDG----GI~---~e~i~~~~~aGAD~~VvGSaIf 258 (281)
+.-|..+++.. +++|.+|- |-. ..-....+.+|||++++=+-+.
T Consensus 264 l~ai~~lk~~~-----~lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~ 314 (350)
T 1vr6_A 264 ISAVPIIRKES-----HLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPE 314 (350)
T ss_dssp TTHHHHHHHHB-----SSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSC
T ss_pred HHHHHHHHHhh-----CCCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence 33344555542 35665643 322 2333445788999999987764
|
| >3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 | Back alignment and structure |
|---|
Probab=83.12 E-value=13 Score=33.58 Aligned_cols=174 Identities=17% Similarity=0.081 Sum_probs=96.3
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+- .-|+.--..++.. ++++...+. -..|+.++.- .+..+ +.+.+.+
T Consensus 29 ~iD~~~l~~lv~~li~~Gv~Gl~---v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg-~~t~~ai~la~~A~~ 104 (316)
T 3e96_A 29 SIDWHHYKETVDRIVDNGIDVIV---PCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIG-YATSTAIELGNAAKA 104 (316)
T ss_dssp CBCHHHHHHHHHHHHTTTCCEEC---TTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEEC-SSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCEEE---eCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeC-cCHHHHHHHHHHHHh
Confidence 46778888999999999998652 2232222223333 344444443 2478999875 35543 4556778
Q ss_pred cCCCEEEEccc--c-cccccHHHHHHHHHH-cCCcEEEE-ECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHH
Q 023494 137 AGADIVSVHCE--Q-SSTIHLHRTLNQIKD-LGAKAGVV-LNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 137 aGAd~Itvh~E--a-~~~~~i~~~l~~ik~-~G~k~Gla-i~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
+|||.+.+..= . .+.+.+.+..+.+-+ .++.+.+= ..++-+.+.+.++.+...++.+= +. .| .+.
T Consensus 105 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~g~~l~~~~~~~La~~pnIvgiK--ds--sg------d~~ 174 (316)
T 3e96_A 105 AGADAVMIHMPIHPYVTAGGVYAYFRDIIEALDFPSLVYFKDPEISDRVLVDLAPLQNLVGVK--YA--IN------DLP 174 (316)
T ss_dssp HTCSEEEECCCCCSCCCHHHHHHHHHHHHHHHTSCEEEEECCTTSCTHHHHHHTTCTTEEEEE--EC--CC------CHH
T ss_pred cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHcCCCEEEEE--eC--CC------CHH
Confidence 99999988521 1 012234444444433 36655553 24455667788877544444331 11 11 234
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
++.++++..+.. ++. .|=.|-....+..+...|++.+|.|.+
T Consensus 175 ~~~~~~~~~~~~--~f~-~v~~G~d~~~~~~~l~~G~~G~is~~a 216 (316)
T 3e96_A 175 RFAKVVRSIPEE--HQI-AWICGTAEKWAPFFWHAGAKGFTSGLV 216 (316)
T ss_dssp HHHHHHTTSCGG--GCC-EEEETTCTTTHHHHHHHTCCEEEESGG
T ss_pred HHHHHHHhcCCC--Cce-EEEeCChHHHHHHHHHCCCCEEEechh
Confidence 455544432210 232 033454444566677899999999965
|
| >2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A* | Back alignment and structure |
|---|
Probab=83.10 E-value=6.2 Score=36.47 Aligned_cols=122 Identities=12% Similarity=0.063 Sum_probs=70.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccc-----cc---------------ccCCHHHHHHcCcCCC-CCeeEEEEecC---
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFV-----PN---------------ITIGPLVVDALRPVTD-LPLDVHLMIVE--- 126 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fv-----pn---------------~~~G~~~I~~ir~~t~-~~idaHLmv~d--- 126 (281)
++.++.+.+.++|.|.|||..--|-.+ |+ ..|-.++++++|+..+ .++-+.|=..+
T Consensus 162 ~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~ 241 (365)
T 2gou_A 162 DYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLN 241 (365)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTT
T ss_pred HHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccC
Confidence 444555667889999998865433211 32 1133466888887632 26766554322
Q ss_pred ------h----hhHHHHHHHcCCCEEEEccccc--ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--CCEEE
Q 023494 127 ------P----EQRVPDFIKAGADIVSVHCEQS--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVL 192 (281)
Q Consensus 127 ------p----~~~i~~~~~aGAd~Itvh~Ea~--~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--vD~Il 192 (281)
+ .++++.+.++|+|++++|.-.. ......+.++.+|+.=...-++.. .-..+..++++.. +|.|.
T Consensus 242 ~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~iPvi~~G-gi~~~~a~~~l~~g~aD~V~ 320 (365)
T 2gou_A 242 GTVDADPILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQGVLIYAG-RYNAEKAEQAINDGLADMIG 320 (365)
T ss_dssp SCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEES-SCCHHHHHHHHHTTSCSEEE
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCCcEEEeC-CCCHHHHHHHHHCCCcceeh
Confidence 1 1235667789999999996310 011123566777765222333332 3346777777763 89987
Q ss_pred E
Q 023494 193 I 193 (281)
Q Consensus 193 v 193 (281)
+
T Consensus 321 i 321 (365)
T 2gou_A 321 F 321 (365)
T ss_dssp C
T ss_pred h
Confidence 5
|
| >2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 | Back alignment and structure |
|---|
Probab=83.07 E-value=1.2 Score=43.27 Aligned_cols=46 Identities=13% Similarity=0.115 Sum_probs=36.1
Q ss_pred HHHHHHhhhcCC-CCeEEEecCCChhcHHHHHHcCCcEEEEc--ccccC
Q 023494 214 SDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAG--SAVFG 259 (281)
Q Consensus 214 ~~lr~l~~~~~~-~~~I~VDGGI~~e~i~~~~~aGAD~~VvG--SaIf~ 259 (281)
+++++++++.|. +..|++.|||+++++..+.+.|+|+++.| ++|+.
T Consensus 273 ~~~r~~ld~~G~~~~kI~aSggld~~~i~~l~~~G~~~~sfGvGT~Lt~ 321 (494)
T 2f7f_A 273 KRVREQLDEAGFTEAKIYASNDLDENTILNLKMQKSKIDVWGVGTKLIT 321 (494)
T ss_dssp HHHHHHHHHTTCTTCEEEECSSCCHHHHHHHHHTTCCCCEEEECHHHHT
T ss_pred HHHHHHHHhCCCCceEEEEECCCCHHHHHHHHHcCCCEEEEecCccccc
Confidence 566666655442 46899999999999999999999877777 56765
|
| >2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri} | Back alignment and structure |
|---|
Probab=83.01 E-value=4.4 Score=34.84 Aligned_cols=92 Identities=14% Similarity=0.089 Sum_probs=62.2
Q ss_pred ccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH
Q 023494 100 ITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (281)
Q Consensus 100 ~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i 178 (281)
.+|.++.++.+|+. ++.++-. +.-..|..+.+.+.+.|++.++++.... + .+.++.+++.|+++.+.. .+ ..
T Consensus 146 ~Sf~~~~l~~~~~~~p~~~~~~-l~~~~~~~~~~~~~~~~~~~i~~~~~~~---~-~~~v~~~~~~G~~v~~wT-vn-~~ 218 (247)
T 2otd_A 146 SSFEIDALEAAQQAAPELPRGL-LLDEWRDDWRELTARLGCVSIHLNHKLL---D-KARVMQLKDAGLRILVYT-VN-KP 218 (247)
T ss_dssp EESCHHHHHHHHHHCTTSCEEE-EESSCCTTHHHHHHHHTCSEEEEEGGGC---C-HHHHHHHHHTTCEEEEEC-CC-CH
T ss_pred EcCCHHHHHHHHHHCCCCCEEE-EecCCcccHHHHHHHcCCeEEecChHhC---C-HHHHHHHHHCCCEEEEEc-cC-CH
Confidence 37889999999885 5555432 2223445555667788999999887642 2 468899999999998754 23 34
Q ss_pred HHHHHhhcc-CCEEEEEeecCCC
Q 023494 179 SAIECVLDV-VDLVLIMSVNPGF 200 (281)
Q Consensus 179 e~~~~~l~~-vD~IlvmsV~pG~ 200 (281)
+.++.+++. +|.| +|=+|..
T Consensus 219 ~~~~~l~~~GvdgI--~TD~p~~ 239 (247)
T 2otd_A 219 QHAAELLRWGVDCI--CTDAIDV 239 (247)
T ss_dssp HHHHHHHHHTCSEE--EESCTTT
T ss_pred HHHHHHHHcCCCEE--EeCCHHH
Confidence 556666654 8876 3666654
|
| >3i10_A Putative glycerophosphoryl diester phosphodiester; NP_812074.1; HET: MSE; 1.35A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=83.00 E-value=7.4 Score=34.62 Aligned_cols=184 Identities=13% Similarity=0.122 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEe---eeCccccc---------------ccCCHHHHHHcCcCCCCCeeEEEEecChhhH
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDV---MDGRFVPN---------------ITIGPLVVDALRPVTDLPLDVHLMIVEPEQR 130 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDI---mDG~fvpn---------------~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~ 130 (281)
+-|...+++.+.+.|+|++++|| .||..|-. -.+-...++.++-..... -....+.--
T Consensus 31 pENTl~af~~A~~~g~d~iE~Dv~~TkDg~~vv~HD~~l~r~t~~~g~v~~~t~~el~~l~~~~~~~----~~~~~~ipt 106 (278)
T 3i10_A 31 PENSTAAIDSAIAMKVDIVEIDIQKTKDGQLILMHDNTLDRTTTGKGEIKNWTLADIKKLKLKDKDG----KVTNYVVPT 106 (278)
T ss_dssp CTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSSSBSTTTBSCCSBGGGSCHHHHTTSCBBCTTS----CBCSCCCCB
T ss_pred CccHHHHHHHHHHcCCCEEEEEEEECCCCeEEEecCcchhhcCCCCceeecCcHHHHhcCCCCCCCc----ccCCCCCCC
Q ss_pred HHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEEEe--------------
Q 023494 131 VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLIMS-------------- 195 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~Ilvms-------------- 195 (281)
++.+++.-...+.+..|. .......+++.++++|+.--+.+.-..+++.++++.+. ..-+++|.
T Consensus 107 L~evl~~~~~~~~~nie~-~~~~~~~v~~~l~~~~~~~~v~i~s~~~l~~~~~~~p~~~~~~l~~p~i~~~~~~~~~~i~ 185 (278)
T 3i10_A 107 LEEALLTAKGKIMVNLDK-AYDIFDDVYAILEKTETQNQVIMKGGQPIETVKREFGSYLDKVLYMPVIDLGNKEAEKIIT 185 (278)
T ss_dssp HHHHHHHHTTTSEEEEES-CGGGHHHHHHHHHHHTCGGGEEEEESSCHHHHHHHHGGGTTTSEEEEEEETTSTTHHHHHH
T ss_pred HHHHHHHhcCCeEEEEec-CchHHHHHHHHHHHcCCCCeEEEEEhHHHHHHHHHCcCCccceEEEeeecccccchHHHHH
Q ss_pred ----------ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE-------ecC------C-Chhc-HHHHHHc-CCc
Q 023494 196 ----------VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV-------DGG------V-GPKN-AYKVIEA-GAN 249 (281)
Q Consensus 196 ----------V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V-------DGG------I-~~e~-i~~~~~a-GAD 249 (281)
+++-+.. ..+...+.++++++. +.++.+ .|| + +++. +..+++. |+|
T Consensus 186 ~~~~~~~p~~~~~~~~~--~~~~~~~~v~~~~~~------g~~v~~nTlw~~~~~g~~d~~a~~d~~~~~~~l~~~~Gvd 257 (278)
T 3i10_A 186 DYLKELRPAAFEIIYSD--PKNPLPPKIKQLLFK------KSLIWYNTLWGSLAGNHDDNLALTDPEKSYGYLIEQLGAR 257 (278)
T ss_dssp HHHHHTCCSEEEEEBCC--TTCSSHHHHHHHHTT------TSEEEEECSSGGGBTTCCHHHHHHCHHHHHHHHHHTTCEE
T ss_pred HHHHhcCceEEEEeecC--CccchHHHHHHHHHC------CCEEEEEecccccccCccchhhccChHHHHHHHHhcCCCC
Q ss_pred EEEEcccccCCCCHHHHHHHHHH
Q 023494 250 ALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 250 ~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
++. .+.|....+-+++
T Consensus 258 ~I~-------TD~P~~l~~yL~~ 273 (278)
T 3i10_A 258 ILQ-------TDQPAYLLDYLRK 273 (278)
T ss_dssp EEE-------ESCHHHHHHHHHH
T ss_pred EEE-------eCCHHHHHHHHhh
|
| >3no5_A Uncharacterized protein; PFAM DUF849 domain containing protein, structural genomics, center for structural genomics, JCSG; HET: MSE; 1.90A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=82.94 E-value=9.3 Score=34.14 Aligned_cols=193 Identities=15% Similarity=0.125 Sum_probs=108.5
Q ss_pred CHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcC-CCCCeeEEEEe----cChhhHHHHHHHcCCCEEE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPV-TDLPLDVHLMI----VEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv----~dp~~~i~~~~~aGAd~It 143 (281)
.+.++...+.++|+..+|+-+-| |.=+.....--++++.||+. ++..+.+ =+ .++++. ....+...|..+
T Consensus 31 Eia~~A~~~~~AGAaivHlHvRd~~G~~s~d~~~~~e~~~~IR~~~pd~ii~~--Ttg~~~~~~e~R-~~~~~~~Pe~aS 107 (275)
T 3no5_A 31 EQVESTQAAFEAGATLVHLHVRNDDETPTSNPDRFALVLEGIRKHAPGMITQV--STGGRSGAGNER-GAMLSLRPDMAS 107 (275)
T ss_dssp HHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEE--CCCCCTTCCGGG-GTTGGGCCSEEE
T ss_pred HHHHHHHHHHHccCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEe--CCCCCCCCHHHH-hhHhhcCCCEEE
Confidence 55566667788999999998887 53222233445778888875 3544332 22 122222 222456788888
Q ss_pred Eccccc---------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc------CCEEEEEeecCCCCCCccchh
Q 023494 144 VHCEQS---------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 144 vh~Ea~---------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~------vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
+-.-+. +.+.+.++++.++++|+++-+.+.....+..+..+++. ..+-++|++ + +|++-.++
T Consensus 108 l~~gs~Nf~~~v~~N~~~~~~~~~~~~~e~Gi~pE~e~fd~g~l~~~~~l~~~Gl~~~p~~~~~vlGv-~--~g~~~~~~ 184 (275)
T 3no5_A 108 LATGSVNFPTRVYDNPPELVDWLAAEMKTYGIKPEVEAFDLSMIFQAAAMQAAGAIVGPLHIQFVMGI-K--NAMPVDRE 184 (275)
T ss_dssp EECSCEECSSSEECCCHHHHHHHHHHHHHTTCEEEEEESSTHHHHHHHHHHHHTSSCSSCEEEEEECC-T--TSCCCCHH
T ss_pred ecCcccccccccccCCHHHHHHHHHHHHHcCCeeEEEEEcHHHHHHHHHHHHCCCCCCCeeEEEEeCC-C--CCCCCCHH
Confidence 442210 12458889999999999999988755555655555542 233445655 2 36666666
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChh---cHHHHHHcCCcEEEEc--ccccC-----CCCHHHHHHHHHHhc
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPK---NAYKVIEAGANALVAG--SAVFG-----AKDYAEAIKGIKTSK 274 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e---~i~~~~~aGAD~~VvG--SaIf~-----a~dp~~~~~~l~~~~ 274 (281)
.+.-+.+.-+.++. +....| -|+... -....+..|-+ +=+| =.++- +++-.+.++++.+.+
T Consensus 185 ~l~~~~~~l~~~~~---~~~w~v-~g~Gr~~~p~~~~A~~~GGh-vRVGlEDnl~~~~G~~A~sNa~lV~~~~~i~ 255 (275)
T 3no5_A 185 VLEFYVQTLKRLSP---DATWTG-AGIGRHQLTMARWSLELGGH-CRTGLEDNVRLDKNTLAPSNAALVRQVAELC 255 (275)
T ss_dssp HHHHHHHHHHHHCT---TCEEEE-EECGGGHHHHHHHHHHHTCE-EEESTTTCCBSSSSCBCSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC---CCeEEE-EecCHhhHHHHHHHHHhCCC-eEEcCCcceeCCCCCCCCCHHHHHHHHHHHH
Confidence 65443222111232 344433 344433 34455788988 5667 33552 234445555555543
|
| >3sjn_A Mandelate racemase/muconate lactonizing protein; enolase, magnesium binding site, lyase; 1.90A {Shewanella pealeana} | Back alignment and structure |
|---|
Probab=82.79 E-value=3.7 Score=37.94 Aligned_cols=112 Identities=8% Similarity=0.064 Sum_probs=73.4
Q ss_pred hhHHH---HHHHcCCCEEEEccccc--ccccHHHHHHHHHHc---CCcEEEEECCCCC-HHHHHHhhcc-----CCEEEE
Q 023494 128 EQRVP---DFIKAGADIVSVHCEQS--STIHLHRTLNQIKDL---GAKAGVVLNPATS-LSAIECVLDV-----VDLVLI 193 (281)
Q Consensus 128 ~~~i~---~~~~aGAd~Itvh~Ea~--~~~~i~~~l~~ik~~---G~k~Glai~p~t~-ie~~~~~l~~-----vD~Ilv 193 (281)
+.+.+ .+.+.|.+.+=++.-.. +.+.-.+.++++|+. ++.+.+..|.... .+....+++. +++|
T Consensus 148 e~~~~~a~~~~~~Gf~~iKlk~g~~g~~~~~d~~~v~avR~a~g~~~~l~vDan~~~~d~~~A~~~~~~l~~~~i~~i-- 225 (374)
T 3sjn_A 148 EDNVAIVQGLKDQGFSSIKFGGGVMGDDPDTDYAIVKAVREAAGPEMEVQIDLASKWHTCGHSAMMAKRLEEFNLNWI-- 225 (374)
T ss_dssp GGGHHHHHHHHTTTCSEEEEECTTTTSCHHHHHHHHHHHHHHHCSSSEEEEECTTTTCSHHHHHHHHHHSGGGCCSEE--
T ss_pred HHHHHHHHHHHHcCCCEEEeccCCCCCCHHHHHHHHHHHHHHhCCCCeEEEECCCCCCCHHHHHHHHHHhhhcCceEE--
Confidence 66544 45678999999996410 123344667777775 4567778888877 7665555432 3444
Q ss_pred EeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHc-CCcEEEEc
Q 023494 194 MSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEA-GANALVAG 254 (281)
Q Consensus 194 msV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~a-GAD~~VvG 254 (281)
.|++.+..++-++++++.. +++|..|+.+. ++.+..+++. .+|++.+-
T Consensus 226 --------EqP~~~~~~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~l~~~~~d~v~~k 275 (374)
T 3sjn_A 226 --------EEPVLADSLISYEKLSRQV-----SQKIAGGESLTTRYEFQEFITKSNADIVQPD 275 (374)
T ss_dssp --------ECSSCTTCHHHHHHHHHHC-----SSEEEECTTCCHHHHHHHHHHHHCCSEECCB
T ss_pred --------ECCCCcccHHHHHHHHhhC-----CCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 2555555566666666643 47999999998 6778877765 57877654
|
| >2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=82.79 E-value=4.5 Score=35.52 Aligned_cols=146 Identities=12% Similarity=0.091 Sum_probs=74.6
Q ss_pred CCeeEEEEecChh-----hHHHHHHHcCCCEEEEcccccc----ccc-----------------HHHHHHHHHHc--CCc
Q 023494 116 LPLDVHLMIVEPE-----QRVPDFIKAGADIVSVHCEQSS----TIH-----------------LHRTLNQIKDL--GAK 167 (281)
Q Consensus 116 ~~idaHLmv~dp~-----~~i~~~~~aGAd~Itvh~Ea~~----~~~-----------------i~~~l~~ik~~--G~k 167 (281)
..+..+++.-+|. ++++.+.++|+|.|-+..-..+ .+. ..+.++.+|+. ++.
T Consensus 17 ~~~i~~i~~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~P 96 (262)
T 2ekc_A 17 KALVSYLMVGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIP 96 (262)
T ss_dssp CEEEEEEETTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSC
T ss_pred ceEEEEecCCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCC
Confidence 4577777777775 2456678899999999753210 012 23557777776 666
Q ss_pred EEEEECCCCCH-----HH-HHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcH
Q 023494 168 AGVVLNPATSL-----SA-IECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA 240 (281)
Q Consensus 168 ~Glai~p~t~i-----e~-~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i 240 (281)
+++....+ ++ +. ++.... .+|.+++ |... ++.+.++.+...+++.....-+...-+.+.+
T Consensus 97 i~~m~y~n-~v~~~g~~~f~~~~~~aG~dgvii----~dl~--------~ee~~~~~~~~~~~gl~~i~l~~p~t~~~rl 163 (262)
T 2ekc_A 97 FLLMTYYN-PIFRIGLEKFCRLSREKGIDGFIV----PDLP--------PEEAEELKAVMKKYVLSFVPLGAPTSTRKRI 163 (262)
T ss_dssp EEEECCHH-HHHHHCHHHHHHHHHHTTCCEEEC----TTCC--------HHHHHHHHHHHHHTTCEECCEECTTCCHHHH
T ss_pred EEEEecCc-HHHHhhHHHHHHHHHHcCCCEEEE----CCCC--------HHHHHHHHHHHHHcCCcEEEEeCCCCCHHHH
Confidence 66631111 22 11 122222 3676654 2211 2456666666666554321223344445677
Q ss_pred HHHHHcCCcEEEEcc--cccCCCC------HHHHHHHHHHhc
Q 023494 241 YKVIEAGANALVAGS--AVFGAKD------YAEAIKGIKTSK 274 (281)
Q Consensus 241 ~~~~~aGAD~~VvGS--aIf~a~d------p~~~~~~l~~~~ 274 (281)
..+.+.+...+...| ..++... ..+.++++++..
T Consensus 164 ~~ia~~a~gfiy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~ 205 (262)
T 2ekc_A 164 KLICEAADEMTYFVSVTGTTGAREKLPYERIKKKVEEYRELC 205 (262)
T ss_dssp HHHHHHCSSCEEEESSCC---------CHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCEEEEecCCccCCCCCcCcccHHHHHHHHHhhc
Confidence 777777655543322 2443322 235666777654
|
| >2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A* | Back alignment and structure |
|---|
Probab=82.63 E-value=5.2 Score=35.77 Aligned_cols=185 Identities=11% Similarity=0.096 Sum_probs=95.8
Q ss_pred ceEeEEEecc-CccCHHHHHHHHHHcCCCeEEEE-eeeCcccc--c-----c-----cCCHHHHHHcCcCCCCCeeEEEE
Q 023494 58 IIVSPSILSA-NFAKLGEQVKAVELAGCDWIHVD-VMDGRFVP--N-----I-----TIGPLVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 58 ~~i~pSila~-D~~~l~~~l~~l~~~G~d~iHiD-ImDG~fvp--n-----~-----~~G~~~I~~ir~~t~~~idaHLm 123 (281)
+.+.++..+. |.....+..+++.+.|++.. +. +|-..|-. . + ..|.+..+++++..++++....
T Consensus 16 ~~vIAGpc~~~~~e~a~~~a~~lk~~ga~~~-~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~~~te~- 93 (280)
T 2qkf_A 16 FVLFGGINVLESLDSTLQTCAHYVEVTRKLG-IPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDV- 93 (280)
T ss_dssp CEEEEEEEECCCHHHHHHHHHHHHHHHHHHT-CCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCCEEEEC-
T ss_pred eEEEEecCCCCCHHHHHHHHHHHHHhhhhcc-eeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCcEEEec-
Confidence 3333355444 44344455566666654443 33 44433332 1 1 2234444444444567776633
Q ss_pred ecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC-CCHHH--HHHhhc---cCCEEEEEeec
Q 023494 124 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSLSA--IECVLD---VVDLVLIMSVN 197 (281)
Q Consensus 124 v~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~--~~~~l~---~vD~IlvmsV~ 197 (281)
.||. -++.+.+. +|++-+.... ..+. ++++++-+.|+-+++.-... |.-+. ..+++. .-+.+++.+.-
T Consensus 94 -~d~~-~~~~l~~~-~d~~kIga~~--~~n~-~ll~~~a~~~kPV~lk~G~~~t~~e~~~A~~~i~~~Gn~~i~L~~rg~ 167 (280)
T 2qkf_A 94 -HEPH-QCQPVAEV-CDVIQLPAFL--ARQT-DLVVAMAKTGNVVNIKKPQFLSPSQMKNIVEKFHEAGNGKLILCERGS 167 (280)
T ss_dssp -CSGG-GHHHHHHH-CSEEEECGGG--TTBH-HHHHHHHHTCCEEEEECCTTSCGGGHHHHHHHHHHTTCCCEEEEECCE
T ss_pred -CCHH-HHHHHHhh-CCEEEECccc--ccCH-HHHHHHHcCCCcEEEECCCCCCHHHHHHHHHHHHHcCCCeEEEEECCC
Confidence 4544 34445566 8999999753 2333 37888878899999887765 43332 222222 13566654321
Q ss_pred CCCCCCccch--hHHHHHHHHHHHhhhcCCCCeEEEe---------------cCCC---hhcHHHHHHcCCcEEEEcccc
Q 023494 198 PGFGGQSFIE--SQVKKISDLRRMCLEKGVNPWIEVD---------------GGVG---PKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 198 pG~~GQ~f~~--~~l~kI~~lr~l~~~~~~~~~I~VD---------------GGI~---~e~i~~~~~aGAD~~VvGSaI 257 (281)
.+ ++.. ..+.-|..+++... +++|.+| +|-. .......+..|||.+++=+-+
T Consensus 168 -~~---~~~~~~~dl~~i~~lk~~~~----~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~H~ 239 (280)
T 2qkf_A 168 -SF---GYDNLVVDMLGFGVMKQTCG----NLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLESHP 239 (280)
T ss_dssp -EC---STTCEECCTTHHHHHHHHTT----TCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC--
T ss_pred -CC---CCCccccCHHHHHHHHHhCC----CCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEeecC
Confidence 12 1211 12334445555431 3689998 5511 233456678999999988876
Q ss_pred c
Q 023494 258 F 258 (281)
Q Consensus 258 f 258 (281)
.
T Consensus 240 ~ 240 (280)
T 2qkf_A 240 D 240 (280)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A* | Back alignment and structure |
|---|
Probab=82.62 E-value=8.1 Score=33.02 Aligned_cols=119 Identities=11% Similarity=0.069 Sum_probs=65.0
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCC---eeEEEE----ec--Chh----------
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLP---LDVHLM----IV--EPE---------- 128 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~---idaHLm----v~--dp~---------- 128 (281)
.+++.++.+.+.|.+.+++-.-+.++.....+....++++|+. .++. +.+|.- .. ||.
T Consensus 13 ~~~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~ 92 (287)
T 2x7v_A 13 GFDRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVELLK 92 (287)
T ss_dssp CGGGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHHHHH
Confidence 6788899999999999988422211111112334455555442 4555 556631 11 332
Q ss_pred hHHHHHHHcCCCEEEEcccccc----cccHHHHHHHHHH-----cCCcEEEEECCC------CCHHHHHHhhccCC
Q 023494 129 QRVPDFIKAGADIVSVHCEQSS----TIHLHRTLNQIKD-----LGAKAGVVLNPA------TSLSAIECVLDVVD 189 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~----~~~i~~~l~~ik~-----~G~k~Glai~p~------t~ie~~~~~l~~vD 189 (281)
+.++.+.+.|+..|.+|.-... .+....+++.+++ .|+++++--.+. ...+.+..+++.++
T Consensus 93 ~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~~~~~~~~~~~~~~l~~~~~ 168 (287)
T 2x7v_A 93 KEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQKGGNIGYKLEQLKKIRDLVD 168 (287)
T ss_dssp HHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCCTTEECSSHHHHHHHHHHCS
T ss_pred HHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCCCCccCCCHHHHHHHHHhcC
Confidence 2355567889999999843210 1112233333332 577777765433 25566777777664
|
| >3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A* | Back alignment and structure |
|---|
Probab=82.54 E-value=22 Score=32.07 Aligned_cols=137 Identities=14% Similarity=0.106 Sum_probs=80.0
Q ss_pred HHHHHHcCCCEEEEcccccc--cccHHHHHHHHHHcCCcEEEE-ECCCCCHHHHHHhhc-----cCCEEEEEeecCCCC-
Q 023494 131 VPDFIKAGADIVSVHCEQSS--TIHLHRTLNQIKDLGAKAGVV-LNPATSLSAIECVLD-----VVDLVLIMSVNPGFG- 201 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~~--~~~i~~~l~~ik~~G~k~Gla-i~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~- 201 (281)
++.+...++|.|+|-.-+.. .....++...+++.|+.+..= .+-+.+.+.++.++. .++-|+.++-+|-.+
T Consensus 35 ~~~L~~~~pd~vsVT~~~~g~~r~~t~~~a~~i~~~g~~~i~Hltc~~~~~~~l~~~L~~~~~~GI~niLaLrGD~p~~~ 114 (310)
T 3apt_A 35 LEELKAFRPAFVSITYGAMGSTRERSVAWAQRIQSLGLNPLAHLTVAGQSRKEVAEVLHRFVESGVENLLALRGDPPRGE 114 (310)
T ss_dssp HHHHGGGCCSEEEECCCSTTCSHHHHHHHHHHHHHTTCCBCEEEECTTSCHHHHHHHHHHHHHTTCCEEEEECCCCSTTC
T ss_pred HHHHhcCCCCEEEEecCCCCCcchhHHHHHHHHHHhCCCeEEEeecCCCCHHHHHHHHHHHHHCCCCEEEEEcCCCCCCC
Confidence 44456668899999864421 112334566677788887763 333455555665543 378888888775322
Q ss_pred C------CccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-------Ch----hcHHHHHHcCCcEEEEcccccCCCCHH
Q 023494 202 G------QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-------GP----KNAYKVIEAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 202 G------Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-------~~----e~i~~~~~aGAD~~VvGSaIf~a~dp~ 264 (281)
| +.|. +..+-|+.++++.. .++.|.|.|-= +. +.+++=+++|||.+| --.+|..+...
T Consensus 115 g~~~~~~~~f~-~a~~Lv~~ir~~~g---~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAdf~i-TQ~ffD~~~~~ 189 (310)
T 3apt_A 115 RVFRPHPEGFR-YAAELVALIRERYG---DRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLDFAI-TQLFFNNAHYF 189 (310)
T ss_dssp CSCCCCTTSCS-SHHHHHHHHHHHHG---GGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCSEEE-ECCCSCHHHHH
T ss_pred CCCCCCCCCCC-CHHHHHHHHHHhCC---CCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEE-ecccCCHHHHH
Confidence 2 1255 67788888877642 13677775521 11 133333689999554 45667655555
Q ss_pred HHHHHHHH
Q 023494 265 EAIKGIKT 272 (281)
Q Consensus 265 ~~~~~l~~ 272 (281)
...+++++
T Consensus 190 ~f~~~~r~ 197 (310)
T 3apt_A 190 GFLERARR 197 (310)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55554443
|
| >3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi} | Back alignment and structure |
|---|
Probab=82.51 E-value=10 Score=29.14 Aligned_cols=58 Identities=12% Similarity=0.117 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHhhhcCCCCe-EEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 209 QVKKISDLRRMCLEKGVNPW-IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~-I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.++-++++++..+ +.+ |.+.+--+.+....+.++|++.++ .+.-++.+..+.+++.++
T Consensus 98 g~~~~~~lr~~~~----~~~ii~ls~~~~~~~~~~~~~~g~~~~l-----~KP~~~~~l~~~i~~~l~ 156 (157)
T 3hzh_A 98 GITCLSNIMEFDK----NARVIMISALGKEQLVKDCLIKGAKTFI-----VKPLDRAKVLQRVMSVFV 156 (157)
T ss_dssp HHHHHHHHHHHCT----TCCEEEEESCCCHHHHHHHHHTTCSEEE-----ESSCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhCC----CCcEEEEeccCcHHHHHHHHHcCCCEEE-----eCCCCHHHHHHHHHHHhc
Confidence 3555666665532 233 556777778889999999999765 345577777777766543
|
| >3chv_A Prokaryotic domain of unknown function (DUF849) W barrel fold; TIM barrel fold, structural genomics, joint center for struc genomics; HET: MSE; 1.45A {Silicibacter pomeroyi dss-3} PDB: 3fa5_A | Back alignment and structure |
|---|
Probab=82.42 E-value=4.4 Score=36.49 Aligned_cols=195 Identities=12% Similarity=0.038 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcC-CCCCeeEEEEe--cChhhHHHHHHHcCCCEEEEc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPV-TDLPLDVHLMI--VEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv--~dp~~~i~~~~~aGAd~Itvh 145 (281)
.+.++...+.++|+..+|+-+-| |.-......--++++.||+. ++..+.+-.=. .++++....+ +...|+.++-
T Consensus 35 Eia~~A~~~~~AGAaivHlH~Rd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTgg~~~~~eeR~~~~-~~~Pe~aSl~ 113 (284)
T 3chv_A 35 EQVESTQEAFEAGAAIAHCHVRNDDGTPSSDPDRFARLTEGLHTHCPGMIVQFSTGGRSGAGQARGGML-PLKPDMASLS 113 (284)
T ss_dssp HHHHHHHHHHHHTCCEEEECEECTTSCEECCHHHHHHHHHHHHHHSTTCEEEECCCTTTCCGGGGGTTG-GGCCSEEEEC
T ss_pred HHHHHHHHHHHcCCcEEEeeecCCCCCcCCCHHHHHHHHHHHHHhCCCeEEEeCCCCCCCCHHHHHHhh-hcCCCEEEec
Confidence 55566667788999999998887 54222333446778888875 46444432201 1344433333 5678998887
Q ss_pred cccc---------ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc------CCEEEEEeecCCCCCCccchhHH
Q 023494 146 CEQS---------STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV------VDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 146 ~Ea~---------~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~------vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
.-.. +...+.++++.++++|+++-+.+.....+..+..+.+. ..+-.+|++ + +|++-.++.+
T Consensus 114 ~Gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~Gll~~p~~~~~vlGv-~--~g~~~~~~~L 190 (284)
T 3chv_A 114 VGSNNFPSRVYENPPDLVDWLAAQMRSYRVTPEIEAFDLSHILRAIDMHGRGLLYGKLYVQFVMGV-K--NAMPADREVF 190 (284)
T ss_dssp CSCEECSSSEECCCHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHTTCSCSSCEEEEEECC-T--TSCCCCHHHH
T ss_pred CcccccCCccccCCHHHHHHHHHHHHHcCCEEEEEEECHHHHHHHHHHHHcCCCCCCceEEEEEec-C--CCCCCCHHHH
Confidence 5210 23458899999999999999988644455555555442 234455654 3 3555555555
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCChhc---HHHHHHcCCcEEEEc--ccccC-----CCCHHHHHHHHHHhc
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVGPKN---AYKVIEAGANALVAG--SAVFG-----AKDYAEAIKGIKTSK 274 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~~e~---i~~~~~aGAD~~VvG--SaIf~-----a~dp~~~~~~l~~~~ 274 (281)
.-. .+.+........ +---|+.... ....+..|-+ +=+| =.++- +.+-.+.++++.+.+
T Consensus 191 ~~~---~~~~p~~~~~~~-ws~~g~Gr~q~p~~~~A~~~GGh-vRVGlEDnl~~~~G~~A~sNa~lV~~~~~i~ 259 (284)
T 3chv_A 191 DFY---VRMMRTRAPQAE-WCAAGIGANQLTVNEWAIAAGGH-TRTGLEDNIRLDRQTLAPSNAALVRRSVELC 259 (284)
T ss_dssp HHH---HHHHHHHCTTSE-EEEEECTTHHHHHHHHHHHTTCE-EEESTTTCCBSSSSCBCCCHHHHHHHHHHHH
T ss_pred HHH---HHhccCCCCCce-EEEEecCcchhHHHHHHHHcCCC-eEEecccccCCCCCCCCCCHHHHHHHHHHHH
Confidence 433 333333111123 3334455443 3455888988 5567 33442 224445555555543
|
| >3r8r_A Transaldolase; pentose phosphate pathway, schiff bases; 1.90A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=82.41 E-value=19 Score=30.87 Aligned_cols=177 Identities=15% Similarity=0.155 Sum_probs=106.3
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeC-cccccc--cC-C---HHHHHHcCcCCCCCeeEEEEecChhhHHHH---HHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNI--TI-G---PLVVDALRPVTDLPLDVHLMIVEPEQRVPD---FIK 136 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~--~~-G---~~~I~~ir~~t~~~idaHLmv~dp~~~i~~---~~~ 136 (281)
+|-.|+++ ++.+.+.|. .|| +.-|.+ .. | .+.+++|.+..+-++.+-..-.|.+..+++ +.+
T Consensus 5 lDtAn~~e-i~~~~~~g~-------i~GVTTNPsli~k~~g~~~~~~~~eI~~~v~G~Vs~EV~a~d~e~mi~ea~~l~~ 76 (212)
T 3r8r_A 5 VDTANIDE-IREANELGI-------LAGVTTNPSLVAKEANVSFHDRLREITDVVKGSVSAEVISLKAEEMIEEGKELAK 76 (212)
T ss_dssp EECCCHHH-HHHHHHTTC-------EEEEECCHHHHHTSCSSCHHHHHHHHHHHCCSCEEEECCCSSHHHHHHHHHHHHT
T ss_pred EecCCHHH-HHHHHhcCC-------cccccCCHHHHHHccCCCHHHHHHHHHHhcCCCEEEEEecCCHHHHHHHHHHHHH
Confidence 56667754 677776653 345 233443 22 2 356666666544566665555787766554 445
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
.+ +.+.+-.-+ +.+=-+.++.+.+.|+++-+.+--+ .-+.+......++||.. .-|.- ..+....++.++++
T Consensus 77 ~~-~nv~IKIP~--T~eGl~A~~~L~~~GI~vn~TlifS-~~Qa~~Aa~AGa~yISP---fvgRi-~d~~~dG~~~v~~i 148 (212)
T 3r8r_A 77 IA-PNITVKIPM--TSDGLKAVRALTDLGIKTNVTLIFN-ANQALLAARAGATYVSP---FLGRL-DDIGHNGLDLISEV 148 (212)
T ss_dssp TC-TTEEEEEES--SHHHHHHHHHHHHTTCCEEEEEECS-HHHHHHHHHHTCSEEEE---BHHHH-HHTTSCHHHHHHHH
T ss_pred hC-CCEEEEeCC--CHHHHHHHHHHHHCCCcEEEEEeCC-HHHHHHHHHcCCeEEEe---ccchh-hhcCCChHHHHHHH
Confidence 55 344444432 2222356777788899998765422 22222222235788743 22210 00112346778888
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+++++.++++.+|-+..=-|+.++.++..+|+|.+-+.-.+++
T Consensus 149 ~~~~~~~~~~t~ilaAS~R~~~~v~~~a~~G~d~~Tip~~vl~ 191 (212)
T 3r8r_A 149 KQIFDIHGLDTQIIAASIRHPQHVTEAALRGAHIGTMPLKVIH 191 (212)
T ss_dssp HHHHHHHTCCCEEEEBSCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHcCCCCEEEEecCCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 9988888888888666656688999999999999999877664
|
| >2qq6_A Mandelate racemase/muconate lactonizing enzyme- like protein; enolase, Mg ION, PSI-2, NYSGXRC, structural genomics; 2.90A {Rubrobacter xylanophilus dsm 9941} | Back alignment and structure |
|---|
Probab=82.31 E-value=6.6 Score=36.55 Aligned_cols=113 Identities=6% Similarity=0.130 Sum_probs=71.6
Q ss_pred ChhhHHH---HHHHcCCCEEEEccc--cc--------------ccccHHHHHHHHHH-c--CCcEEEEECCCCCHHHHHH
Q 023494 126 EPEQRVP---DFIKAGADIVSVHCE--QS--------------STIHLHRTLNQIKD-L--GAKAGVVLNPATSLSAIEC 183 (281)
Q Consensus 126 dp~~~i~---~~~~aGAd~Itvh~E--a~--------------~~~~i~~~l~~ik~-~--G~k~Glai~p~t~ie~~~~ 183 (281)
+|..+.+ .+.+.|.+.+=+|.. .. ......+.++++|+ . ++.+.+..|.....+....
T Consensus 149 ~~~~~~~~a~~~~~~Gf~~vKik~~~~~G~~~~~~~G~~~~~~~~~~~~e~v~avRea~G~d~~l~vDan~~~~~~~a~~ 228 (410)
T 2qq6_A 149 SNEEYIAVAREAVERGFDAIKLDVDDITGPLHRDFWNGAISPREHEAMVARVAAVREAVGPEVEVAIDMHGRFDIPSSIR 228 (410)
T ss_dssp HHHHHHHHHHHHHHTTCSEEEEECCCSSSTTCSCSSSCCCCHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCCCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCcCccccchhhHHHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHH
Confidence 5665544 456789999999861 00 01224467777777 3 4677788887777766555
Q ss_pred hhcc-----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 184 VLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 184 ~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
+++. +++| .|++.+..++-.+++++. .+++|+.|+.+. ++.+.++++.| +|++.+
T Consensus 229 ~~~~l~~~~i~~i----------EeP~~~~d~~~~~~l~~~-----~~iPIa~dE~~~~~~~~~~~i~~~~~d~v~i 290 (410)
T 2qq6_A 229 FARAMEPFGLLWL----------EEPTPPENLDALAEVRRS-----TSTPICAGENVYTRFDFRELFAKRAVDYVMP 290 (410)
T ss_dssp HHHHHGGGCCSEE----------ECCSCTTCHHHHHHHHTT-----CSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHhhcCCCeE----------ECCCChhhHHHHHHHHhh-----CCCCEEeCCCcCCHHHHHHHHHcCCCCEEec
Confidence 5432 3433 244555555555555543 357999999986 78888888776 677754
|
| >3stp_A Galactonate dehydratase, putative; PSI biology, structural genomics, NEW YORK structural genomi research consortium; 1.88A {Labrenzia aggregata iam 12614} PDB: 3sqs_A 3ssz_A | Back alignment and structure |
|---|
Probab=82.22 E-value=9.8 Score=35.70 Aligned_cols=123 Identities=11% Similarity=0.023 Sum_probs=79.7
Q ss_pred CCeeEEE-EecChhhHHHH---HHHcCCCEEEEcccccc------cccHHHHHHHHHHc---CCcEEEEECCCCCHHHHH
Q 023494 116 LPLDVHL-MIVEPEQRVPD---FIKAGADIVSVHCEQSS------TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 116 ~~idaHL-mv~dp~~~i~~---~~~aGAd~Itvh~Ea~~------~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~ 182 (281)
+++.+.. ...+|+.+.+. +.+.|.+.+=++.-..+ .+...+.++++|+. ++.+.+..|.....+...
T Consensus 168 v~~y~s~~~~~~~e~~~~~a~~~~~~Gf~~iKik~g~gp~dg~~~~~~die~v~avReavG~d~~L~vDaN~~~~~~~Ai 247 (412)
T 3stp_A 168 IPVYYSKLYAGSIEAMQKEAEEAMKGGYKAFKSRFGYGPKDGMPGMRENLKRVEAVREVIGYDNDLMLECYMGWNLDYAK 247 (412)
T ss_dssp EEEEEECCCSCCHHHHHHHHHHHHTTTCSEEEEECCCCGGGHHHHHHHHHHHHHHHHHHHCSSSEEEEECTTCSCHHHHH
T ss_pred EEEEEEecCCCCHHHHHHHHHHHHHcCCCEEEEecccCcccccchHHHHHHHHHHHHHHcCCCCeEEEECCCCCCHHHHH
Confidence 4555542 33577776554 45689999999963210 12234566777764 567788888888877655
Q ss_pred Hhhcc-----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEE
Q 023494 183 CVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVA 253 (281)
Q Consensus 183 ~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~Vv 253 (281)
.+++. +++| .|++.+..++-++++++. .+++|..|+.+. .+.+..+++.| +|++.+
T Consensus 248 ~~~~~Le~~~i~~i----------EeP~~~~d~~~~~~l~~~-----~~iPIa~dE~~~~~~~~~~li~~~a~D~v~i 310 (412)
T 3stp_A 248 RMLPKLAPYEPRWL----------EEPVIADDVAGYAELNAM-----NIVPISGGEHEFSVIGCAELINRKAVSVLQY 310 (412)
T ss_dssp HHHHHHGGGCCSEE----------ECCSCTTCHHHHHHHHHT-----CSSCEEECTTCCSHHHHHHHHHTTCCSEECC
T ss_pred HHHHHHHhcCCCEE----------ECCCCcccHHHHHHHHhC-----CCCCEEeCCCCCCHHHHHHHHHcCCCCEEec
Confidence 55432 3444 255666556666666654 358999999998 77888888876 787754
|
| >3toy_A Mandelate racemase/muconate lactonizing enzyme FA protein; enolase, magnesium binding site, lyase; HET: P4C; 1.80A {Bradyrhizobium SP} PDB: 3tte_A* | Back alignment and structure |
|---|
Probab=82.12 E-value=5 Score=37.28 Aligned_cols=124 Identities=8% Similarity=0.096 Sum_probs=78.4
Q ss_pred CCeeEEEEecChhhHHHH---HHHc-CCCEEEEcccccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc-
Q 023494 116 LPLDVHLMIVEPEQRVPD---FIKA-GADIVSVHCEQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV- 187 (281)
Q Consensus 116 ~~idaHLmv~dp~~~i~~---~~~a-GAd~Itvh~Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~- 187 (281)
+++.+..-..+|+...+. +.+. |...+=+..-....+.-.+.++++|+. ++.+.+..|.....+....+++.
T Consensus 157 v~~y~s~g~~~~e~~~~~a~~~~~~~G~~~~KlKvG~~~~~~d~~~v~avR~a~G~~~~l~vDaN~~~~~~~A~~~~~~l 236 (383)
T 3toy_A 157 IPAYDSYGVLDARDDERTLRTACDEHGFRAIKSKGGHGDLATDEAMIKGLRALLGPDIALMLDFNQSLDPAEATRRIARL 236 (383)
T ss_dssp EEEEEECSSCCHHHHHHHHHHHHHTSCCCEEEEECCSSCHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHH
T ss_pred eEEeEecCCCCHHHHHHHHHHHHHccCCcEEEEecCCCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCCHHHHHHHHHHH
Confidence 344443333678766544 4567 999998876421112233566677764 46777888888887665555432
Q ss_pred ----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 188 ----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 188 ----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
+++| .|++.+..++-++++++.. .++|+.|..+. .+.+..+++.| +|++.+-
T Consensus 237 ~~~~i~~i----------EeP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~~i~~~a~d~v~ik 294 (383)
T 3toy_A 237 ADYDLTWI----------EEPVPQENLSGHAAVRERS-----EIPIQAGENWWFPRGFAEAIAAGASDFIMPD 294 (383)
T ss_dssp GGGCCSEE----------ECCSCTTCHHHHHHHHHHC-----SSCEEECTTCCHHHHHHHHHHHTCCSEECCC
T ss_pred HhhCCCEE----------ECCCCcchHHHHHHHHhhc-----CCCEEeCCCcCCHHHHHHHHHcCCCCEEEeC
Confidence 3333 3566666666666666643 47999999998 67888888766 6777544
|
| >1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} | Back alignment and structure |
|---|
Probab=82.06 E-value=26 Score=30.86 Aligned_cols=140 Identities=14% Similarity=0.234 Sum_probs=78.6
Q ss_pred hHHHHHHHcCCCEEEEccccccc-----ccHHHHHHHHHHc-CCcEEEEECCCCCHHHHHHhhcc-CCEEEEEe-ecCCC
Q 023494 129 QRVPDFIKAGADIVSVHCEQSST-----IHLHRTLNQIKDL-GAKAGVVLNPATSLSAIECVLDV-VDLVLIMS-VNPGF 200 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~-----~~i~~~l~~ik~~-G~k~Glai~p~t~ie~~~~~l~~-vD~Ilvms-V~pG~ 200 (281)
++++.+.++|.+.|-+.....+. .+..+.++.+++. +.++.+.+ + ..+.++..++. +|.|.+.. ..+.+
T Consensus 30 ~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~-~--n~~~i~~a~~~G~~~V~i~~~~S~~h 106 (295)
T 1ydn_A 30 ALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLV-P--NMKGYEAAAAAHADEIAVFISASEGF 106 (295)
T ss_dssp HHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEEC-S--SHHHHHHHHHTTCSEEEEEEESCHHH
T ss_pred HHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEe-C--CHHHHHHHHHCCCCEEEEEEecCHHH
Confidence 46777888899988886532111 1456777777665 66665443 3 35666666553 78776531 11111
Q ss_pred CC---CccchhHHHHHHHHHHHhhhcCCCCeEEEe--c------CCChhcHHHHH----HcCCcEEEEcccccCCCCHHH
Q 023494 201 GG---QSFIESQVKKISDLRRMCLEKGVNPWIEVD--G------GVGPKNAYKVI----EAGANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 201 ~G---Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VD--G------GI~~e~i~~~~----~aGAD~~VvGSaIf~a~dp~~ 265 (281)
.- ..-.++.++++++..++..+.|..+..++- + -.+++.+.+++ ++|+|.+.+.-. .+...|..
T Consensus 107 ~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~~~~~~~~G~d~i~l~Dt-~G~~~P~~ 185 (295)
T 1ydn_A 107 SKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDT-IGRGTPDT 185 (295)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHHHHHHHHHTCSEEEEEET-TSCCCHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHHHHHHHhcCCCEEEecCC-CCCcCHHH
Confidence 00 112356777877777777766544331121 2 34566555544 799999998832 22245655
Q ss_pred HHHHHHH
Q 023494 266 AIKGIKT 272 (281)
Q Consensus 266 ~~~~l~~ 272 (281)
..+.++.
T Consensus 186 ~~~lv~~ 192 (295)
T 1ydn_A 186 VAAMLDA 192 (295)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444443
|
| >1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* | Back alignment and structure |
|---|
Probab=82.00 E-value=21 Score=32.28 Aligned_cols=72 Identities=15% Similarity=0.255 Sum_probs=43.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCc--ccc--cccC--CHHHHHHcCcCCCCCeeEEEE--ecChhhHHHHHHHcCCCEEE
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGR--FVP--NITI--GPLVVDALRPVTDLPLDVHLM--IVEPEQRVPDFIKAGADIVS 143 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~--fvp--n~~~--G~~~I~~ir~~t~~~idaHLm--v~dp~~~i~~~~~aGAd~It 143 (281)
.++..+.++..|+|.|.+++--.+ +.| +-.| -.+.++++|+.++.|+.+-+. ..++ +.+..+.++|+|+|+
T Consensus 129 ~~~~~~~~~~~gad~i~i~~~~~~~~~~~~~~~~~~~~~~~i~~vr~~~~~Pv~vK~~~~~~~~-~~a~~a~~~Gad~I~ 207 (349)
T 1p0k_A 129 AAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSK-ASAGKLYEAGAAAVD 207 (349)
T ss_dssp HHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCH-HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhcCCCeEEecccchhhhcCCCCCcchHHHHHHHHHHHHHcCCCEEEEecCCCCCH-HHHHHHHHcCCCEEE
Confidence 444445566789999876643110 001 1122 136788888877788887442 0343 357788899999999
Q ss_pred E
Q 023494 144 V 144 (281)
Q Consensus 144 v 144 (281)
+
T Consensus 208 v 208 (349)
T 1p0k_A 208 I 208 (349)
T ss_dssp E
T ss_pred E
Confidence 9
|
| >3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A | Back alignment and structure |
|---|
Probab=81.96 E-value=27 Score=30.95 Aligned_cols=173 Identities=13% Similarity=0.157 Sum_probs=98.8
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 19 ~iD~~~l~~lv~~li~~Gv~gl~v---~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~ 95 (292)
T 3daq_A 19 KVNLEALKAHVNFLLENNAQAIIV---NGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKA 95 (292)
T ss_dssp EECHHHHHHHHHHHHHTTCCEEEE---SSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHH
Confidence 577888889999999999997643 233222223333 344444443 2478999877667654 4556678
Q ss_pred cCCCEEEEccc---ccccccHHHHHHHHHH-cCCcEEEEECC-----CCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCE---QSSTIHLHRTLNQIKD-LGAKAGVVLNP-----ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~E---a~~~~~i~~~l~~ik~-~G~k~Glai~p-----~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|||.+.+..- ..+.+.+.+..+.+-+ .++.+.+=-+| +-+.+.+.++.+...++.+= +. .|
T Consensus 96 ~Gadavlv~~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~~pnivgiK--~s--sg----- 166 (292)
T 3daq_A 96 LGADAIMLITPYYNKTNQRGLVKHFEAIADAVKLPVVLYNVPSRTNMTIEPETVEILSQHPYIVALK--DA--TN----- 166 (292)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHCSCEEEEECHHHHSCCCCHHHHHHHHTSTTEEEEE--EC--CC-----
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEecccccCCCCCHHHHHHHhcCCCEEEEE--eC--CC-----
Confidence 89998887632 1112234444444333 47777765544 33557777776644444321 10 11
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++..+. .++.+ ..| -. +.+-.....|++.+|.|.+
T Consensus 167 -d~~~~~~~~~~~~~--~~f~v-~~G-~d-~~~~~~l~~G~~G~is~~~ 209 (292)
T 3daq_A 167 -DFEYLEEVKKRIDT--NSFAL-YSG-ND-DNVVEYYQRGGQGVISVIA 209 (292)
T ss_dssp -CHHHHHHHHTTSCT--TTSEE-EES-CG-GGHHHHHHTTCCEEEESGG
T ss_pred -CHHHHHHHHHHCCC--CCEEE-EEC-CH-HHHHHHHhcCCCEEEeCHH
Confidence 24555555543321 03444 233 33 3455668899999999965
|
| >3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A | Back alignment and structure |
|---|
Probab=81.82 E-value=6 Score=32.52 Aligned_cols=92 Identities=22% Similarity=0.192 Sum_probs=61.1
Q ss_pred CHHHHHHHHHHcCCC-eEEEEe-eeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 71 KLGEQVKAVELAGCD-WIHVDV-MDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d-~iHiDI-mDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
.+.+.++.+...|+. .+-.++ .+|.. -.+..+.++++++..+.|+.+---+.+|... ..+.+.|+|.+.+.-.-
T Consensus 131 ~~~~~i~~~~~~~~~~vli~~~~~~g~~---~g~~~~~i~~~~~~~~~Pvia~~g~~~~~~~-~~~~~~G~~~~~vg~a~ 206 (237)
T 3cwo_X 131 LLRDWVVEVEKRGAGEILLTSIDRDGTK---SGYDTEMIRFVRPLTTLPIIASGGAGKMEHF-LEAFLAGADAALAASVF 206 (237)
T ss_dssp EHHHHHHHHHHHTCSEEEEEETTTTTCC---SCCCHHHHHHHGGGCCSCEEEESCCCSHHHH-HHHHHHTCSEEEESHHH
T ss_pred CHHHHHHHHhhcCCCeEEEEecCCCCcc---ccccHHHHHHHHHhcCCCEEecCCCCCHHHH-HHHHHcCcHHHhhhHHH
Confidence 567778888887887 333344 33421 2334778999888778898874445666644 44557999999877321
Q ss_pred -cccccHHHHHHHHHHcCC
Q 023494 149 -SSTIHLHRTLNQIKDLGA 166 (281)
Q Consensus 149 -~~~~~i~~~l~~ik~~G~ 166 (281)
....++.++++.+++.|+
T Consensus 207 ~~~~~~~~~~~~~l~~~~~ 225 (237)
T 3cwo_X 207 HFREIDVRELKEYLKKHGV 225 (237)
T ss_dssp HTTSSCHHHHHHHHHTTTC
T ss_pred HcCCCCHHHHHHHHHHCCC
Confidence 023468888888888776
|
| >3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A* | Back alignment and structure |
|---|
Probab=81.76 E-value=4.8 Score=34.77 Aligned_cols=125 Identities=11% Similarity=0.103 Sum_probs=73.5
Q ss_pred EeEEEeccCc---cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeE-EEEe-------c
Q 023494 60 VSPSILSANF---AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDV-HLMI-------V 125 (281)
Q Consensus 60 i~pSila~D~---~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~ida-HLmv-------~ 125 (281)
|.-|.++.-. ..+++.++.+.+.|.+.+++..-. + +. +....++++|+. .++.+.+ |-.. .
T Consensus 4 igi~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~--~-~~--~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~~~ 78 (294)
T 3vni_A 4 HGIYYAYWEQEWEADYKYYIEKVAKLGFDILEIAASP--L-PF--YSDIQINELKACAHGNGITLTVGHGPSAEQNLSSP 78 (294)
T ss_dssp EEEEGGGGCSSSCCCHHHHHHHHHHHTCSEEEEESTT--G-GG--CCHHHHHHHHHHHHHTTCEEEEEECCCGGGCTTCS
T ss_pred EEEehhhhcCCcCcCHHHHHHHHHHcCCCEEEecCcc--c-CC--cCHHHHHHHHHHHHHcCCeEEEeecCCCCcCCCCC
Confidence 4444444322 479999999999999998886321 2 22 345555555542 5666665 3221 2
Q ss_pred Chh----------hHHHHHHHcCCCEEE--Ecccc-------cc--------cccHHHHHHHHHHcCCcEEEEECC---C
Q 023494 126 EPE----------QRVPDFIKAGADIVS--VHCEQ-------SS--------TIHLHRTLNQIKDLGAKAGVVLNP---A 175 (281)
Q Consensus 126 dp~----------~~i~~~~~aGAd~It--vh~Ea-------~~--------~~~i~~~l~~ik~~G~k~Glai~p---~ 175 (281)
||. +.++.+.+.|++.+. +|.-. .+ .+.+.++.+.++++|+++++--.+ .
T Consensus 79 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~~~~ 158 (294)
T 3vni_A 79 DPDIRKNAKAFYTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNRFEN 158 (294)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCTTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCcccC
Confidence 442 245566788999997 44210 00 112556667778899998886543 1
Q ss_pred ---CCHHHHHHhhccCC
Q 023494 176 ---TSLSAIECVLDVVD 189 (281)
Q Consensus 176 ---t~ie~~~~~l~~vD 189 (281)
...+.+..+++.++
T Consensus 159 ~~~~~~~~~~~l~~~v~ 175 (294)
T 3vni_A 159 YLINTAQEGVDFVKQVD 175 (294)
T ss_dssp SSCCSHHHHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHcC
Confidence 24556666666543
|
| >1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A | Back alignment and structure |
|---|
Probab=81.69 E-value=2.8 Score=35.96 Aligned_cols=56 Identities=11% Similarity=0.038 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCCh-------hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGP-------KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-------e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
.++-|+++|+.. +.++.+-+++|+ +.++.+.++|||.+++|..-. +++++..+.++
T Consensus 68 ~~~~i~~i~~~~-----~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~--~~~~~~~~~~~ 130 (248)
T 1geq_A 68 AFWIVKEFRRHS-----STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPV--FHAKEFTEIAR 130 (248)
T ss_dssp HHHHHHHHHTTC-----CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCG--GGHHHHHHHHH
T ss_pred HHHHHHHHHhhC-----CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCCh--hhHHHHHHHHH
Confidence 345555555432 357777666785 788999999999999995322 34444444443
|
| >3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=81.61 E-value=28 Score=30.89 Aligned_cols=171 Identities=12% Similarity=0.154 Sum_probs=97.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcCC--CCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVT--DLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~t--~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+.. ..|+.++.-.++..+ +.+.+.+
T Consensus 20 ~iD~~~l~~lv~~li~~Gv~gl~~---~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~ 96 (294)
T 3b4u_A 20 TVDIDAMIAHARRCLSNGCDSVTL---FGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALN 96 (294)
T ss_dssp SBCHHHHHHHHHHHHHTTCSEEEE---SSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHh
Confidence 367778889999999999997643 243222233333 3444444432 368999888777654 4555678
Q ss_pred cCCCEEEEcccc----cccccHHHHHHHHHH-c---CCcEEEEECCC-----CCHHHHHHhh-ccCC-EEEEEeecCCCC
Q 023494 137 AGADIVSVHCEQ----SSTIHLHRTLNQIKD-L---GAKAGVVLNPA-----TSLSAIECVL-DVVD-LVLIMSVNPGFG 201 (281)
Q Consensus 137 aGAd~Itvh~Ea----~~~~~i~~~l~~ik~-~---G~k~Glai~p~-----t~ie~~~~~l-~~vD-~IlvmsV~pG~~ 201 (281)
+|||.+.+..-. .+.+.+.+..+.+-+ . ++.+.+=-+|. -+.+.+.++. +... ++.+= +. .
T Consensus 97 ~Gadavlv~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~~~pn~ivgiK--ds--~ 172 (294)
T 3b4u_A 97 AGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVK--DS--S 172 (294)
T ss_dssp TTCSEEEECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHHHCTTTEEEEE--EC--C
T ss_pred cCCCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHHhCCCcEEEEE--EC--C
Confidence 999998876321 112334444444433 3 66666644442 3556777776 4444 44331 11 1
Q ss_pred CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
| .+.++.++++..+ ++.+ .. |-. +.+-.....|++.+|.|.+
T Consensus 173 g------d~~~~~~~~~~~~----~f~v-~~-G~d-~~~l~~l~~G~~G~is~~~ 214 (294)
T 3b4u_A 173 G------NWSHTERLLKEHG----DLAI-LI-GDE-RDLARGVRLGGQGAISGVA 214 (294)
T ss_dssp C------CHHHHHHHHHHHT----TSEE-EE-CCH-HHHHHHHHTTCCEEEESGG
T ss_pred C------CHHHHHHHHHhCC----CeEE-EE-ccH-HHHHHHHHCCCCEEEeCHH
Confidence 1 2445555555432 3444 23 332 3455667899999999955
|
| >2o55_A Putative glycerophosphodiester phosphodiesterase; beta barrel, structural genomics, protein structure initiati 2; 2.81A {Galdieria sulphuraria} | Back alignment and structure |
|---|
Probab=81.53 E-value=25 Score=30.20 Aligned_cols=178 Identities=13% Similarity=0.049 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEee---eCcccccccC---C---------------------------------HHHHHH
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVM---DGRFVPNITI---G---------------------------------PLVVDA 109 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDIm---DG~fvpn~~~---G---------------------------------~~~I~~ 109 (281)
+-|...+++.+.+.|+|++++||. ||..|-.... . .++++.
T Consensus 22 PENTl~Af~~A~~~Gad~iE~DV~lTkDg~lVv~HD~~~~~l~Rtt~~~g~v~~~t~~eL~~l~~~~~~~iptL~evl~~ 101 (258)
T 2o55_A 22 PENTLRSFVLCMERNIPYIETDLRVCKTGEIVLFHGTPEGTIPFYKDGTSRIGDLSLEELKRLDVGGGHTIPSLEELFVA 101 (258)
T ss_dssp CTTCHHHHHHHHHTTCCEEEEEEEECTTSCEEECCCSTTSBCTTSTTTTCBGGGSCHHHHTTCBSSSSCBCCBHHHHHHH
T ss_pred CccHHHHHHHHHHcCcCEEEEEEEEecCCeEEEEeCCCCccceeeCCCCeehhhCcHHHHhhcCCCCCCccCCHHHHHHH
Q ss_pred cCcCC-CCCeeEEEEecC--------hhhHHHHHHHcCC-CEEEEcccccccccHHHHHHHHHHc--CCcEEEEE---CC
Q 023494 110 LRPVT-DLPLDVHLMIVE--------PEQRVPDFIKAGA-DIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVL---NP 174 (281)
Q Consensus 110 ir~~t-~~~idaHLmv~d--------p~~~i~~~~~aGA-d~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai---~p 174 (281)
++..+ +..+.+.+|... ....++.+.+.|. +.+.+.... .+.++.+|+. +++.|+.+ .+
T Consensus 102 ~~~~~~~~~l~iEiK~~~~~~~~~~~~~~v~~~l~~~~~~~~v~i~Sf~------~~~l~~~~~~~p~~~~~~l~~~~~~ 175 (258)
T 2o55_A 102 IEEQKFNLKLNLELKGEEWKRKESGDHQRLLLLVEKYHMQERVDYCSFH------HEALAHLKALCPDVKITYLFNYMGQ 175 (258)
T ss_dssp HHHSCSCCEEEEEECCSSSSSTTSSHHHHHHHHHHTTTCGGGEEEEESS------HHHHHHHHHHCTTCEEEEECCTTSC
T ss_pred hhhhcCceEEEEEEccCCccccchHHHHHHHHHHHHcCCCCCEEEEeCC------HHHHHHHHHHCCCCcEEEEEeCCCC
Q ss_pred CCCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC----CChhcHHHHHHcCCc
Q 023494 175 ATSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG----VGPKNAYKVIEAGAN 249 (281)
Q Consensus 175 ~t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG----I~~e~i~~~~~aGAD 249 (281)
..+.+.+...... ++.|..- +.--.-+.++++++. +.++.+=.= =+++.+..+.+.|+|
T Consensus 176 ~~~~~~~~~~~~~~~~~v~~~----------~~~~~~~~v~~~~~~------G~~v~~wTv~~~~n~~~~~~~l~~~Gvd 239 (258)
T 2o55_A 176 PTPLDFVEQACYGDANGVSML----------FHYLTKEQVCTAHEK------GLSVTVWMPWIFDDSEEDWKKCLELQVD 239 (258)
T ss_dssp CCCTTHHHHHHHTTCSEEEEE----------GGGCCHHHHHHHHHT------TCEEEEECCTTCCCCHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHhcCCeEEecC----------hhhcCHHHHHHHHHC------CCEEEEeeCCCCCCCHHHHHHHHHcCCC
Q ss_pred EEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 250 ALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 250 ~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.++ .++|....+.+++.+.
T Consensus 240 gI~-------TD~p~~~~~~l~~~~~ 258 (258)
T 2o55_A 240 LIC-------SNYPFGLMNFLSNISE 258 (258)
T ss_dssp EEE-------ESCHHHHHHHHTC---
T ss_pred EEE-------eCCHHHHHHHHHHhcC
|
| >2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=81.50 E-value=5.9 Score=40.58 Aligned_cols=119 Identities=13% Similarity=0.104 Sum_probs=83.1
Q ss_pred HHH-cC--CCEEEEcccccccccHHHHHHHHHHcC-------CcEEEEECCCCCHHHHHHhhccCCEEEEEeec-----C
Q 023494 134 FIK-AG--ADIVSVHCEQSSTIHLHRTLNQIKDLG-------AKAGVVLNPATSLSAIECVLDVVDLVLIMSVN-----P 198 (281)
Q Consensus 134 ~~~-aG--Ad~Itvh~Ea~~~~~i~~~l~~ik~~G-------~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~-----p 198 (281)
+.+ .| +..|.++.-. +.+++..+.+.++..| .++|+.+....-+..+.+++..+|.+.+.+-+ -
T Consensus 633 a~~~~G~~~~~ImvP~V~-t~~E~~~~~~~l~~~g~~~~~~~~~vg~MIEtp~a~~~ad~ia~~vD~~siGtnDLtq~tl 711 (794)
T 2ols_A 633 VRDEMGLTNVEIMIPFVR-TLGEAEAVVKALKENGLERGKNGLRLIMMCELPSNAVLAEQFLQYFDGFSIGSNDMTQLTL 711 (794)
T ss_dssp HHHTSCCTTEEEEECCCC-SHHHHHHHHHHHHHTTCCTTGGGCCEEEEECSHHHHHTHHHHHTTSSEEEEEHHHHHHHHH
T ss_pred HHHhcCCCCceEEecCCC-CHHHHHHHHHHHHhcCcccCccCCEEEEEECcHHHHHHHHHHHHhCCEEEECHHHHHHHHh
Confidence 455 57 6777777554 3567777778777655 55788885444456777888889999886432 2
Q ss_pred CCC---------CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC---ChhcHHHHHHcCCcEEEEcc
Q 023494 199 GFG---------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV---GPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 199 G~~---------GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI---~~e~i~~~~~aGAD~~VvGS 255 (281)
|+. ++...|..+.-|+.+.+..... +.++.|=|-. +++.++.+++.|.|.+.++.
T Consensus 712 g~~R~~~~~~~~~~~~~p~v~~~i~~~v~aar~~--g~~vgicGe~~~~dp~~~~~~~~~G~~~~s~~p 778 (794)
T 2ols_A 712 GLDRDSGLVSESFDERNPAVKVMLHLAISACRKQ--NKYVGICGQGPSDHPDFAKWLVEEGIESVSLNP 778 (794)
T ss_dssp TCCTTCTTTGGGCCTTSHHHHHHHHHHHHHHHTT--TCEEEEESSHHHHCHHHHHHHHHHTCCEEEECG
T ss_pred CCCCCcchhccccCCCCHHHHHHHHHHHHHHHHh--CCEEEEecccCCCCHHHHHHHHHCCCCEEEECH
Confidence 332 4556788888888777766554 4566664444 78889999999999998863
|
| >2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A | Back alignment and structure |
|---|
Probab=81.49 E-value=28 Score=30.79 Aligned_cols=165 Identities=17% Similarity=0.085 Sum_probs=84.1
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcCCCCCeeEEEEecChhh---HHHHHHHcC
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTDLPLDVHLMIVEPEQ---RVPDFIKAG 138 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~t~~~idaHLmv~dp~~---~i~~~~~aG 138 (281)
..|+..+++-++.+.+.|++-+-+ =|+.--..++.. ++++...+..+. +.++.-.++..+ +.+.+.++|
T Consensus 16 ~iD~~~l~~lv~~li~~Gv~gl~v---~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg~~~t~~ai~la~~A~~~G 91 (288)
T 2nuw_A 16 KVNVDALKTHAKNLLEKGIDAIFV---NGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSNEMD 91 (288)
T ss_dssp CBCHHHHHHHHHHHHHTTCCEEEE---TSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECCCSCHHHHHHHHHHHHTSC
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeCCCCHHHHHHHHHHHHhcC
Confidence 467778889999999999987633 233222233333 444544554333 666655555543 444566789
Q ss_pred CCEEEEcccc----cccccHHHHHHHHH-HcCCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccchh
Q 023494 139 ADIVSVHCEQ----SSTIHLHRTLNQIK-DLGAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 139 Ad~Itvh~Ea----~~~~~i~~~l~~ik-~~G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
||.+.+..-. .+.+.+.+..+.+- ..++.+.+=-+|. -+.+.+.++ .++.+= +. .|
T Consensus 92 adavlv~~P~y~~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L----nIvgiK--ds--sg------ 157 (288)
T 2nuw_A 92 ILGVSSHSPYYFPRLPEKFLAKYYEEIARISSHSLYIYNYPAATGYDIPPSILKSL----PVKGIK--DT--NQ------ 157 (288)
T ss_dssp CSEEEECCCCSSCSCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHTTT----TEEEEE--EC--CS------
T ss_pred CCEEEEcCCcCCCCCCHHHHHHHHHHHHHhcCCCEEEEECchHhCcCCCHHHHhcc----EEEEEE--eC--CC------
Confidence 9988775221 11222333333333 3355555544442 233434333 222211 11 11
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++ .+ .++.+ =.|-.. .+-..... ++.+|.|.+
T Consensus 158 d~~~~~~~~~-~~---~~f~v--~~G~d~-~~~~~l~~-~~G~is~~a 197 (288)
T 2nuw_A 158 DLAHSLEYKL-NL---PGVKV--YNGSNT-LIYYSLLS-LDGVVASFT 197 (288)
T ss_dssp CHHHHHHHHH-HS---TTCEE--EECCGG-GHHHHHTT-SSEEECGGG
T ss_pred CHHHHHHHHh-cC---CCeEE--EECcHH-HHHHHHHH-hCEEEecHH
Confidence 1445555555 32 23444 334333 44445567 999999955
|
| >3vkj_A Isopentenyl-diphosphate delta-isomerase; type 2 isopentenyl diphosphate isomerase; HET: FNR; 1.70A {Sulfolobus shibatae} PDB: 2zrv_A* 2zrw_A* 2zrx_A* 2zry_A* 2zrz_A* 3b03_A* 3b04_A* 3b05_A* 3b06_A* 2zru_A* | Back alignment and structure |
|---|
Probab=81.44 E-value=6.8 Score=36.37 Aligned_cols=63 Identities=11% Similarity=0.082 Sum_probs=39.3
Q ss_pred HcCCCeEEEEeeeCccccc--ccC---CHHHHHHcCcCCCCCeeEEEEe---cChhhHHHHHHHcCCCEEEEc
Q 023494 81 LAGCDWIHVDVMDGRFVPN--ITI---GPLVVDALRPVTDLPLDVHLMI---VEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 81 ~~G~d~iHiDImDG~fvpn--~~~---G~~~I~~ir~~t~~~idaHLmv---~dp~~~i~~~~~aGAd~Itvh 145 (281)
++|+..||+..++..+-|. ..| -.+.++++++.+++|+.+-. + ..| +..+.+.++|+|.|.+.
T Consensus 148 ~a~al~Ihln~~~~~~~p~g~~~~~~~~~~~i~~i~~~~~vPVivK~-vG~g~s~-~~A~~l~~aGad~I~V~ 218 (368)
T 3vkj_A 148 EADAIAVHLNPAQEVFQPEGEPEYQIYALEKLRDISKELSVPIIVKE-SGNGISM-ETAKLLYSYGIKNFDTS 218 (368)
T ss_dssp TCSEEEEECCHHHHHHSSSCCCBCBTHHHHHHHHHHTTCSSCEEEEC-SSSCCCH-HHHHHHHHTTCCEEECC
T ss_pred cCCCeEEEecchhhhhCCCCCchhhHHHHHHHHHHHHHcCCCEEEEe-CCCCCCH-HHHHHHHhCCCCEEEEe
Confidence 4455555554333322221 233 25678888888888887743 3 233 35778899999999994
|
| >3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7 | Back alignment and structure |
|---|
Probab=81.40 E-value=4.4 Score=36.74 Aligned_cols=153 Identities=14% Similarity=0.178 Sum_probs=0.0
Q ss_pred HHHHHHcCcCCCCCeeEEEEe-----cChhhHHHHHHHcCCCEEEEccccc-------------ccccHHHHHHHHHHcC
Q 023494 104 PLVVDALRPVTDLPLDVHLMI-----VEPEQRVPDFIKAGADIVSVHCEQS-------------STIHLHRTLNQIKDLG 165 (281)
Q Consensus 104 ~~~I~~ir~~t~~~idaHLmv-----~dp~~~i~~~~~aGAd~Itvh~Ea~-------------~~~~i~~~l~~ik~~G 165 (281)
...++.|.+.++.|+.+|+=. .+..+.+..+.++|+..|.+-.-.. +.++..+-|+++++.-
T Consensus 72 ~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~ 151 (298)
T 3eoo_A 72 LVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDAR 151 (298)
T ss_dssp HHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhc
Q ss_pred CcEEEEECCCC----------CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe--
Q 023494 166 AKAGVVLNPAT----------SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD-- 232 (281)
Q Consensus 166 ~k~Glai~p~t----------~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD-- 232 (281)
....+.|+-.| -+++.+.|.+. +|.|.+ ||... .+.++++.+-++ .++.+-
T Consensus 152 ~~~~~~I~ARTDa~~~~gldeai~Ra~ay~~AGAD~if~----~~~~~-------~ee~~~~~~~~~-----~Pl~~n~~ 215 (298)
T 3eoo_A 152 TDETFVIMARTDAAAAEGIDAAIERAIAYVEAGADMIFP----EAMKT-------LDDYRRFKEAVK-----VPILANLT 215 (298)
T ss_dssp SSTTSEEEEEECTHHHHHHHHHHHHHHHHHHTTCSEEEE----CCCCS-------HHHHHHHHHHHC-----SCBEEECC
T ss_pred cCCCeEEEEeehhhhhcCHHHHHHHHHhhHhcCCCEEEe----CCCCC-------HHHHHHHHHHcC-----CCeEEEec
Q ss_pred -cCCChh-cHHHHHHcCCcEEEEcccccCC--CCHHHHHHHHHH
Q 023494 233 -GGVGPK-NAYKVIEAGANALVAGSAVFGA--KDYAEAIKGIKT 272 (281)
Q Consensus 233 -GGI~~e-~i~~~~~aGAD~~VvGSaIf~a--~dp~~~~~~l~~ 272 (281)
||-++. +..++.+.|+..++.|...+.+ ....+.++.|++
T Consensus 216 ~~g~tp~~~~~eL~~lGv~~v~~~~~~~raa~~a~~~~~~~i~~ 259 (298)
T 3eoo_A 216 EFGSTPLFTLDELKGANVDIALYCCGAYRAMNKAALNFYETVRR 259 (298)
T ss_dssp TTSSSCCCCHHHHHHTTCCEEEECSHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCCHHHHHHcCCeEEEEchHHHHHHHHHHHHHHHHHHH
|
| >1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5 | Back alignment and structure |
|---|
Probab=81.38 E-value=8.1 Score=32.69 Aligned_cols=117 Identities=11% Similarity=-0.005 Sum_probs=67.8
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCC-CCCeeEEEEecChhhHHHHHHHcCCCEE--EEcccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVT-DLPLDVHLMIVEPEQRVPDFIKAGADIV--SVHCEQ 148 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t-~~~idaHLmv~dp~~~i~~~~~aGAd~I--tvh~Ea 148 (281)
-.++++.+.++|+|.++++..-... |+-..-.+.++.+|+.. +.++.+ -+.++. ....+.++|+|+| +++.-.
T Consensus 90 ~~~~i~~~~~~Gad~V~l~~~~~~~-~~~~~~~~~i~~i~~~~~~~~v~~--~~~t~~-ea~~a~~~Gad~i~~~v~g~~ 165 (234)
T 1yxy_A 90 TMTEVDQLAALNIAVIAMDCTKRDR-HDGLDIASFIRQVKEKYPNQLLMA--DISTFD-EGLVAHQAGIDFVGTTLSGYT 165 (234)
T ss_dssp SHHHHHHHHTTTCSEEEEECCSSCC-TTCCCHHHHHHHHHHHCTTCEEEE--ECSSHH-HHHHHHHTTCSEEECTTTTSS
T ss_pred hHHHHHHHHHcCCCEEEEcccccCC-CCCccHHHHHHHHHHhCCCCeEEE--eCCCHH-HHHHHHHcCCCEEeeeccccC
Confidence 3567888999999999987443210 11001157888888753 455444 233443 3566789999999 566321
Q ss_pred cc-----cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 149 SS-----TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 149 ~~-----~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
.. ..++ +.++.+++.++.+ ++..-=+..+.+.+++. .+|.|.+.
T Consensus 166 ~~~~~~~~~~~-~~i~~~~~~~ipv-ia~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 166 PYSRQEAGPDV-ALIEALCKAGIAV-IAEGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp TTSCCSSSCCH-HHHHHHHHTTCCE-EEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CCCcCCCCCCH-HHHHHHHhCCCCE-EEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 10 1123 4566666554333 33332234777777776 48988764
|
| >2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=81.20 E-value=29 Score=30.76 Aligned_cols=172 Identities=13% Similarity=0.088 Sum_probs=96.6
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcC--CCCCeeEEEEecChhh---HHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPV--TDLPLDVHLMIVEPEQ---RVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~--t~~~idaHLmv~dp~~---~i~~~~~ 136 (281)
..|+..+++.++.+.+.|++-+-+ =|+.--..++.. ++++...+. -..|+.++.-.++..+ +.+.+.+
T Consensus 17 ~iD~~~l~~lv~~li~~Gv~gl~~---~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~ 93 (294)
T 2ehh_A 17 EVDYEALGNLIEFHVDNGTDAILV---CGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKE 93 (294)
T ss_dssp EECHHHHHHHHHHHHTTTCCEEEE---SSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEE---CccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHh
Confidence 367778889999999999987643 243222223333 334443432 2378888887777654 4455678
Q ss_pred cCCCEEEEcccc---cccccHHHHHHHHHH-cCCcEEEEECCC-----CCHHHHHHhh-ccCCEEEEEeecCCCCCCccc
Q 023494 137 AGADIVSVHCEQ---SSTIHLHRTLNQIKD-LGAKAGVVLNPA-----TSLSAIECVL-DVVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 137 aGAd~Itvh~Ea---~~~~~i~~~l~~ik~-~G~k~Glai~p~-----t~ie~~~~~l-~~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+|||.+.+..-. .+.+.+.+..+.+-+ .++.+.+=-+|. -+.+.+.++. +...++.+= +. .|
T Consensus 94 ~Gadavlv~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~~~pnivgiK--ds--~g---- 165 (294)
T 2ehh_A 94 VGADGALVVVPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLASECENIVASK--ES--TP---- 165 (294)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHHHCTTEEEEE--EC--CS----
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHhhCCCEEEEE--eC--CC----
Confidence 899988775221 112234444444333 466666544442 3556777776 433444321 11 11
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.+.++.++++..+ .++.+ ..| -. +.+-.....|++.+|.|.+
T Consensus 166 --d~~~~~~~~~~~~---~~f~v-~~G-~d-~~~~~~l~~G~~G~is~~a 207 (294)
T 2ehh_A 166 --NMDRISEIVKRLG---ESFSV-LSG-DD-SLTLPMMALGAKGVISVAN 207 (294)
T ss_dssp --CHHHHHHHHHHHC---TTSEE-EES-SG-GGHHHHHHTTCCEEEESGG
T ss_pred --CHHHHHHHHHhcC---CCeEE-EEC-cH-HHHHHHHHCCCCEEEeCHH
Confidence 2455555555443 23544 334 32 3455677899999999965
|
| >3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A* | Back alignment and structure |
|---|
Probab=81.10 E-value=7.6 Score=32.78 Aligned_cols=117 Identities=8% Similarity=0.057 Sum_probs=65.3
Q ss_pred cChhhHHHHH--HHcCCCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHH-HHHHhhc-cCCEEEEEeecC
Q 023494 125 VEPEQRVPDF--IKAGADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLS-AIECVLD-VVDLVLIMSVNP 198 (281)
Q Consensus 125 ~dp~~~i~~~--~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie-~~~~~l~-~vD~IlvmsV~p 198 (281)
.|+++-++.+ .+.|+|++-++.+-. ...--+.++.+|+. +..+.+.++.....+ .++.+.+ .+|+|.++.
T Consensus 16 ~~~~~~~~~~~~~~~~vd~ie~g~~~~-~~~G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~vh~--- 91 (218)
T 3jr2_A 16 TNLTDAVAVASNVASYVDVIEVGTILA-FAEGMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWITVSA--- 91 (218)
T ss_dssp SSHHHHHHHHHHHGGGCSEEEECHHHH-HHHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEEEET---
T ss_pred CCHHHHHHHHHHhcCCceEEEeCcHHH-HhcCHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEEEec---
Confidence 4444433332 355899999986521 11112568888887 667877776554333 3344444 489997742
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE--ecCCChhcHHHHHHcCCcEEEEcc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV--DGGVGPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V--DGGI~~e~i~~~~~aGAD~~VvGS 255 (281)
..+ ++++ +++.+.+++.| ....+ -|=-|++.+..+.+.|+|.+++..
T Consensus 92 -~~~----~~~~---~~~~~~~~~~g--~~~~~d~l~~~T~~~~~~~~~~g~d~v~~~~ 140 (218)
T 3jr2_A 92 -AAH----IATI---AACKKVADELN--GEIQIEIYGNWTMQDAKAWVDLGITQAIYHR 140 (218)
T ss_dssp -TSC----HHHH---HHHHHHHHHHT--CEEEEECCSSCCHHHHHHHHHTTCCEEEEEC
T ss_pred -CCC----HHHH---HHHHHHHHHhC--CccceeeeecCCHHHHHHHHHcCccceeeee
Confidence 222 2233 23333333333 34433 233467778888888999887753
|
| >1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 | Back alignment and structure |
|---|
Probab=80.87 E-value=14 Score=35.11 Aligned_cols=80 Identities=6% Similarity=-0.014 Sum_probs=43.6
Q ss_pred CCC-eeEEEEec----ChhhHHHHHHHcCCCEEEEccccccccc-------------------HHHHHHHHHHc-C-CcE
Q 023494 115 DLP-LDVHLMIV----EPEQRVPDFIKAGADIVSVHCEQSSTIH-------------------LHRTLNQIKDL-G-AKA 168 (281)
Q Consensus 115 ~~~-idaHLmv~----dp~~~i~~~~~aGAd~Itvh~Ea~~~~~-------------------i~~~l~~ik~~-G-~k~ 168 (281)
++| +.+-+-.. +.....+.+.++|+|+|++|.-.....+ ..+.+..+++. + ...
T Consensus 296 ~~P~V~vKispd~~~ed~~~iA~~~~~aGaDgI~v~ntt~~~~d~~~~~~~~GGlSG~~~~~~sl~~i~~v~~~v~~~iP 375 (443)
T 1tv5_A 296 KKPLVFVKLAPDLNQEQKKEIADVLLETNIDGMIISNTTTQINDIKSFENKKGGVSGAKLKDISTKFICEMYNYTNKQIP 375 (443)
T ss_dssp SCCEEEEEECSCCCHHHHHHHHHHHHHTTCSEEEECCCBSCCCCCGGGTTCCSEEEEHHHHHHHHHHHHHHHHHTTTCSC
T ss_pred CCCeEEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEECCCcccccccccccccCCcCCCcchHHHHHHHHHHHHHcCCCCc
Confidence 467 66643322 2223466778999999999964210000 13567777765 2 223
Q ss_pred EEEECCCCCHHHHHHhhc-cCCEEEEE
Q 023494 169 GVVLNPATSLSAIECVLD-VVDLVLIM 194 (281)
Q Consensus 169 Glai~p~t~ie~~~~~l~-~vD~Ilvm 194 (281)
.+...-=+..+...+.+. .+|.|.+.
T Consensus 376 VIg~GGI~s~~DA~e~l~aGAd~Vqig 402 (443)
T 1tv5_A 376 IIASGGIFSGLDALEKIEAGASVCQLY 402 (443)
T ss_dssp EEEESSCCSHHHHHHHHHTTEEEEEES
T ss_pred EEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 334332244555555544 58988763
|
| >3l5a_A NADH/flavin oxidoreductase/NADH oxidase; OLD yellow enzyme family, OYE-like FMN-binding domain, TIM B oxidoreductase; HET: PGE; 1.65A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=80.76 E-value=2.5 Score=40.07 Aligned_cols=121 Identities=12% Similarity=0.089 Sum_probs=67.2
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCc-----ccc--c--------------ccCCHHHHHHcCcCC------CCCeeEEEEe-
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGR-----FVP--N--------------ITIGPLVVDALRPVT------DLPLDVHLMI- 124 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~-----fvp--n--------------~~~G~~~I~~ir~~t------~~~idaHLmv- 124 (281)
.++.+++.++|.|.|+|-.--|- +.| | ..|-.++++++|+.. +.++-+-|=.
T Consensus 173 ~~AA~rA~~AGfDgVEIH~ahGYLl~QFlSp~~N~RtD~yGGs~lenR~Rf~~evv~aVr~~v~~~~~~~f~v~vRis~~ 252 (419)
T 3l5a_A 173 RDATLRAIKAGFDGVEISIAQRLLIQTFFSTFSNRRTDHYGADSLKNRARLCLEVMRAVQEVIDKEAPDNFILGFRATPE 252 (419)
T ss_dssp HHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSTTCHHHHHHHHHHHHHHHHHHHHHHCCTTCEEEEEECSC
T ss_pred HHHHHHHHHcCCCEEEECCccchHHHHccCCcccccccCCCCchhhhhhHHHHHHHHHHHHHHhhhcCCCeeEEEecccc
Confidence 34445677899999877533221 012 2 134566788887743 4566664422
Q ss_pred -----------cChhhHHHHHHH-cCCCEEEEccccc----------ccccHHHHHHHHHHc-CCcEEEEECCC-CCHHH
Q 023494 125 -----------VEPEQRVPDFIK-AGADIVSVHCEQS----------STIHLHRTLNQIKDL-GAKAGVVLNPA-TSLSA 180 (281)
Q Consensus 125 -----------~dp~~~i~~~~~-aGAd~Itvh~Ea~----------~~~~i~~~l~~ik~~-G~k~Glai~p~-t~ie~ 180 (281)
.+...+++.+.+ +|+|++++|.-.. ....-...++.+|+. +-++=|..+-. +..+.
T Consensus 253 ~~~~~~~G~~~ed~~~la~~L~~~~Gvd~I~vs~g~~~~~~~~~~~~g~~~~~~~a~~Ik~~v~~~iPVI~~GgI~t~e~ 332 (419)
T 3l5a_A 253 ETRGSDLGYTIDEFNQLIDWVMDVSNIQYLAIASWGRHIYQNTSRTPGDHFGRPVNQIVYEHLAGRIPLIASGGINSPES 332 (419)
T ss_dssp EEETTEEEECHHHHHHHHHHHHHHSCCCCEEECCTTCCGGGCBCCCSSTTTTSBHHHHHHHHHTTSSCEEECSSCCSHHH
T ss_pred cccCCCCCCCHHHHHHHHHHHHhhcCCcEEEEeeCCccccccccCCCCccccHHHHHHHHHHcCCCCeEEEECCCCCHHH
Confidence 122345667788 9999999996310 000012345666653 21222333333 46677
Q ss_pred HHHhhccCCEEEE
Q 023494 181 IECVLDVVDLVLI 193 (281)
Q Consensus 181 ~~~~l~~vD~Ilv 193 (281)
.++.+..+|.|.+
T Consensus 333 Ae~~L~~aDlVai 345 (419)
T 3l5a_A 333 ALDALQHADMVGM 345 (419)
T ss_dssp HHHHGGGCSEEEE
T ss_pred HHHHHHhCCcHHH
Confidence 7777666998876
|
| >2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A* | Back alignment and structure |
|---|
Probab=80.49 E-value=3.7 Score=35.34 Aligned_cols=130 Identities=12% Similarity=0.050 Sum_probs=0.0
Q ss_pred CceEeEEEeccCc---cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEe---------
Q 023494 57 DIIVSPSILSANF---AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMI--------- 124 (281)
Q Consensus 57 ~~~i~pSila~D~---~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv--------- 124 (281)
+++|+-+.++.-- ..+++.++.+.+.|.+.+++...+....+ ......++++-+..++.+.+|.-.
T Consensus 1 Mmkig~~~~~~~~~~~~~~~~~l~~~~~~G~~~vEl~~~~~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~~~~l~~~ 78 (290)
T 2qul_A 1 MNKVGMFYTYWSTEWMVDFPATAKRIAGLGFDLMEISLGEFHNLS--DAKKRELKAVADDLGLTVMCCIGLKSEYDFASP 78 (290)
T ss_dssp CCCEEEETTSSCSSSCCCHHHHHHHHHHTTCSEEEEESTTGGGSC--HHHHHHHHHHHHHHTCEEEEEEEECGGGCTTCS
T ss_pred CcceeEEeeeecCcccccHHHHHHHHHHhCCCEEEEecCCccccc--hhhHHHHHHHHHHcCCceEEecCCCCCCCCCCC
Q ss_pred ---------cChhhHHHHHHHcCCCEEEEcc-------------------cccccccHHHHHHHHHHcCCcEEEEECCC-
Q 023494 125 ---------VEPEQRVPDFIKAGADIVSVHC-------------------EQSSTIHLHRTLNQIKDLGAKAGVVLNPA- 175 (281)
Q Consensus 125 ---------~dp~~~i~~~~~aGAd~Itvh~-------------------Ea~~~~~i~~~l~~ik~~G~k~Glai~p~- 175 (281)
..-.+.++.+.+.|+..|.++. +.. .+.+.++.+.++++|+++++--.+.
T Consensus 79 d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~-~~~l~~l~~~a~~~gv~l~lEn~~~~ 157 (290)
T 2qul_A 79 DKSVRDAGTEYVKRLLDDCHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRA-IESVRRVIKVAEDYGIIYALEVVNRF 157 (290)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHH-HHHHHTTHHHHHHHTCEEEEECCCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEeeccccCCcccCCCcccHHHHHHHH-HHHHHHHHHHHHHcCCEEEEEeCccc
Q ss_pred -----CCHHHHHHhhccCC
Q 023494 176 -----TSLSAIECVLDVVD 189 (281)
Q Consensus 176 -----t~ie~~~~~l~~vD 189 (281)
...+.+..+++.++
T Consensus 158 ~~~~~~~~~~~~~l~~~~~ 176 (290)
T 2qul_A 158 EQWLCNDAKEAIAFADAVD 176 (290)
T ss_dssp TCSSCCSHHHHHHHHHHHC
T ss_pred cccccCCHHHHHHHHHHcC
|
| >1vd6_A Glycerophosphoryl diester phosphodiesterase; glycerophosphod phosphodiesterase, HB8; 1.30A {Thermus thermophilus} SCOP: c.1.18.3 PDB: 1v8e_A | Back alignment and structure |
|---|
Probab=80.38 E-value=6.1 Score=33.49 Aligned_cols=111 Identities=17% Similarity=0.078 Sum_probs=0.0
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEee---eCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH-HHHHHHcCCCEEEE
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVM---DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR-VPDFIKAGADIVSV 144 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDIm---DG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~-i~~~~~aGAd~Itv 144 (281)
+-|.-.+++.+.+.|+|++++||. ||..|-......+ .-.+.+ + ++.+.+..
T Consensus 21 PENTl~Af~~A~~~G~d~iE~DV~lT~Dg~lVv~HD~~l~---------------~g~v~~---~t~~eL~~l~------ 76 (224)
T 1vd6_A 21 KENTLESFRLALEAGLDGVELDVWPTRDGVFAVRHDPDTP---------------LGPVFQ---VDYADLKAQE------ 76 (224)
T ss_dssp CTTSHHHHHHHHHTTCSEEEEEEEECTTSCEEECSCSEET---------------TEEGGG---SCHHHHHHHS------
T ss_pred CcchHHHHHHHHHcCCCEEEEEeeEecCCcEEEECCCccC---------------CCChhh---CCHHHHHhcC------
Q ss_pred cccccccccHHHHHHHHH-HcCCcEEEEECCCCC-----HHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 145 HCEQSSTIHLHRTLNQIK-DLGAKAGVVLNPATS-----LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 145 h~Ea~~~~~i~~~l~~ik-~~G~k~Glai~p~t~-----ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+ ...+++++++.++ +.++.+-+.+..... .+.+...+...+.+++ ++|.+..+.+++++
T Consensus 77 --~--~iptL~evl~~~~~~~~~~l~iEiK~~~~~~~~~~~~v~~~l~~~~~v~i---------~Sf~~~~l~~~~~~ 141 (224)
T 1vd6_A 77 --P--DLPRLEEVLALKEAFPQAVFNVELKSFPGLGEEAARRLAALLRGREGVWV---------SSFDPLALLALRKA 141 (224)
T ss_dssp --T--TCCBHHHHHGGGGTCTTCEEEEEECCCTTSHHHHHHHHHHHTTTCSSEEE---------EESCHHHHHHHHHH
T ss_pred --C--CCCCHHHHHHhhhccCCceEEEEECCCCCccHHHHHHHHHHHhcCCcEEE---------EeCCHHHHHHHHHH
|
| >3can_A Pyruvate-formate lyase-activating enzyme; structural genomics, pyruvate-formate lyase-activating enzym MCSG, APC20359.1; 1.80A {Bacteroides vulgatus atcc 8482} | Back alignment and structure |
|---|
Probab=80.33 E-value=12 Score=30.05 Aligned_cols=105 Identities=16% Similarity=0.113 Sum_probs=61.2
Q ss_pred EEEEc-ccccccccH-HHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC--------CCCccchhHH
Q 023494 141 IVSVH-CEQSSTIHL-HRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF--------GGQSFIESQV 210 (281)
Q Consensus 141 ~Itvh-~Ea~~~~~i-~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~--------~GQ~f~~~~l 210 (281)
.|++. +|..-..++ .++++.+++.|+.+.+..|...+.+.++.+++.+|.|.+ +++ |. .|..+ ...+
T Consensus 6 ~v~~tGGEPll~~~~~~~l~~~~~~~g~~~~l~TNG~l~~~~~~~l~~~~d~v~i-sld-~~~~~~~~~~~g~~~-~~i~ 82 (182)
T 3can_A 6 GVTFCGGEPLLHPEFLIDILKRCGQQGIHRAVDTTLLARKETVDEVMRNCELLLI-DLK-SMDSTVHQTFCDVPN-ELIL 82 (182)
T ss_dssp CEEECSSTGGGSHHHHHHHHHHHHHTTCCEEEECTTCCCHHHHHHHHHTCSEEEE-ECC-CSCHHHHHHHHSSCS-HHHH
T ss_pred EEEEEcccccCCHHHHHHHHHHHHHCCCcEEEECCCCCCHHHHHHHHhhCCEEEE-ECC-CCCHHHHHHHhCCCH-HHHH
Confidence 34444 564212234 589999999999999999876566777777777888764 554 22 12222 4445
Q ss_pred HHHHHHHHHhhhcCCCC--eEEEecCCC--hhcHH----HHHHc-CC-cEEE
Q 023494 211 KKISDLRRMCLEKGVNP--WIEVDGGVG--PKNAY----KVIEA-GA-NALV 252 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~--~I~VDGGI~--~e~i~----~~~~a-GA-D~~V 252 (281)
+.|+.+++ .+..+ .+.+.-|+| .+.+. .+.+. |+ +.+.
T Consensus 83 ~~i~~l~~----~g~~v~i~~~v~~~~n~n~~~~~~~~~~~~~~~g~~~~~~ 130 (182)
T 3can_A 83 KNIRRVAE----ADFPYYIRIPLIEGVNADEKNIKLSAEFLASLPRHPEIIN 130 (182)
T ss_dssp HHHHHHHH----TTCCEEEEEEECBTTTCSHHHHHHHHHHHHHSSSCCSEEE
T ss_pred HHHHHHHh----CCCeEEEEEEEECCCCCCHHHHHHHHHHHHhCcCccceEE
Confidence 55555543 23333 344577765 34443 34455 87 5443
|
| >3c8f_A Pyruvate formate-lyase 1-activating enzyme; adoMet radical, SAM radical, activase, glycyl radical, 4Fe- 4S, carbohydrate metabolism, cytoplasm; HET: MT2 PGE; 2.25A {Escherichia coli} PDB: 3cb8_A* | Back alignment and structure |
|---|
Probab=80.33 E-value=23 Score=29.17 Aligned_cols=109 Identities=19% Similarity=0.169 Sum_probs=62.2
Q ss_pred CCCEEEEcc-ccccccc-HHHHHHHHHHcCCcEEEEECCCC--CHHHHHHhhccCCEEEEEeecCCC-------CCCccc
Q 023494 138 GADIVSVHC-EQSSTIH-LHRTLNQIKDLGAKAGVVLNPAT--SLSAIECVLDVVDLVLIMSVNPGF-------GGQSFI 206 (281)
Q Consensus 138 GAd~Itvh~-Ea~~~~~-i~~~l~~ik~~G~k~Glai~p~t--~ie~~~~~l~~vD~IlvmsV~pG~-------~GQ~f~ 206 (281)
+...|++.+ |.....+ +.++++.+++.|+++.+..|... ..+.+..+++.+|.|.+ +++-+- .|..+
T Consensus 69 ~~~~i~~~GGEP~l~~~~l~~l~~~~~~~~~~i~i~Tng~~~~~~~~~~~l~~~~~~v~i-sld~~~~~~~~~~~~~~~- 146 (245)
T 3c8f_A 69 SGGGVTASGGEAILQAEFVRDWFRACKKEGIHTCLDTNGFVRRYDPVIDELLEVTDLVML-DLKQMNDEIHQNLVGVSN- 146 (245)
T ss_dssp TTCEEEEEESCGGGGHHHHHHHHHHHHTTTCCEEEEECCCCCCCCHHHHHHHHTCSEEEE-ECCCSSHHHHHHHHSSCS-
T ss_pred CCCeEEEECCCcCCCHHHHHHHHHHHHHcCCcEEEEeCCCcCcCHHHHHHHHHhCCEEEE-eCCCCCHHHhhhccCCCH-
Confidence 356777764 4221223 57899999999999999888654 45667777777887654 554221 12223
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeE--EEecCCCh--hc----HHHHHHcCC-cEEE
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWI--EVDGGVGP--KN----AYKVIEAGA-NALV 252 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I--~VDGGI~~--e~----i~~~~~aGA-D~~V 252 (281)
...++.|+.+++ .+..+.+ .+..|.+. ++ +..+.+.|+ +.+-
T Consensus 147 ~~~~~~i~~l~~----~g~~v~i~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 197 (245)
T 3c8f_A 147 HRTLEFAKYLAN----KNVKVWIRYVVVPGWSDDDDSAHRLGEFTRDMGNVEKIE 197 (245)
T ss_dssp HHHHHHHHHHHH----HTCCEEEEEEECTTTTCCHHHHHHHHHHHHHHCCEEEEE
T ss_pred HHHHHHHHHHHh----cCCEEEEEEeecCCCCCCHHHHHHHHHHHHhcCCCceeE
Confidence 444555555543 3333333 35667653 33 445566775 4333
|
| >3tji_A Mandelate racemase/muconate lactonizing enzyme, N domain protein; enolase, dehydratase, enzyme function initiative, EFI, lyase; 1.80A {Enterobacter SP} | Back alignment and structure |
|---|
Probab=80.30 E-value=8.6 Score=36.19 Aligned_cols=174 Identities=8% Similarity=0.062 Sum_probs=103.3
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCccccc--------------ccCCHHHHHHcC--cCCCCCeeEEEE
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN--------------ITIGPLVVDALR--PVTDLPLDVHLM 123 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--------------~~~G~~~I~~ir--~~t~~~idaHLm 123 (281)
+.|.|+--|+.++++..+.+.... -|- -|...+. -..|..+-+-|- ....++.-+++-
T Consensus 78 l~p~LiG~dp~~ie~~~~~l~~~~-~~~-----~g~~~~~A~saiD~ALwDl~gK~~g~Pv~~LLGG~~r~~v~~y~~~~ 151 (422)
T 3tji_A 78 LQPLMIGRDANNIEDLWQMMNVNA-YWR-----NGPLMNNAISGVDMALWDIKGQLAGMPLYQLFGGKSRDAIPAYSHAS 151 (422)
T ss_dssp HHHHHTTSBTTCHHHHHHHHHHTT-SSC-----CSHHHHHHHHHHHHHHHHHHHHHHTSBHHHHTTCCSSSCEEEEEEEE
T ss_pred HHHHhCCCCcccHHHHHHHHHHhh-hcc-----CCchHHHHHHHHHHHHHHHHHHHhCCcHHHHcCCCCCCeEEEEEEeC
Confidence 667777778888887767666532 110 0111110 011222222221 112356666766
Q ss_pred ecChhhHHH---HHHHcCCCEEEEcccccc-----------------------cccHHHHHHHHHHc---CCcEEEEECC
Q 023494 124 IVEPEQRVP---DFIKAGADIVSVHCEQSS-----------------------TIHLHRTLNQIKDL---GAKAGVVLNP 174 (281)
Q Consensus 124 v~dp~~~i~---~~~~aGAd~Itvh~Ea~~-----------------------~~~i~~~l~~ik~~---G~k~Glai~p 174 (281)
..+|+.+.+ .+.+.|...+-+..-... .+...+.++++|+. ++.+.+..|.
T Consensus 152 ~~~~e~~~~~a~~~~~~G~~~iKlKvG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~e~v~avR~avG~d~~L~vDaN~ 231 (422)
T 3tji_A 152 GETLEALFASVDALIAQGYRHIRCQLGFYGGTPSALHAPDNPTPGAWFDQQEYMSNTVEMFHALREKYGWKLHILHDVHE 231 (422)
T ss_dssp ESSHHHHHHHHHHHHHTTCSEEEEEESCCCBCGGGSCCCSSCCSSEECCHHHHHHHHHHHHHHHHHHHCSSSEEEEECTT
T ss_pred CCCHHHHHHHHHHHHHcCCCEEEEeeccCCcccccccccccccccccccchhHHHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence 778887654 456789999887642100 01234567777774 5677788888
Q ss_pred CCCHHHHHHhhcc-----CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-
Q 023494 175 ATSLSAIECVLDV-----VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG- 247 (281)
Q Consensus 175 ~t~ie~~~~~l~~-----vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG- 247 (281)
....+....+++. +++| .|++.+..++-++++++.. .++|+.|+.+. .+.+..+++.|
T Consensus 232 ~~~~~~A~~~~~~Le~~~i~~i----------EqP~~~~d~~~~~~l~~~~-----~iPIa~dE~~~~~~~~~~ll~~ga 296 (422)
T 3tji_A 232 RLFPQQAVQLAKQLEPFQPYFI----------EDILPPQQSAWLEQVRQQS-----CVPLALGELFNNPAEWHDLIVNRR 296 (422)
T ss_dssp CSCHHHHHHHHHHHGGGCCSEE----------ECCSCGGGGGGHHHHHHHC-----CCCEEECTTCCSGGGTHHHHHTTC
T ss_pred CCCHHHHHHHHHHHHhhCCCeE----------ECCCChhhHHHHHHHHhhC-----CCCEEEeCCcCCHHHHHHHHhcCC
Confidence 8777666555432 3333 2556555555666666543 47999999998 78888888876
Q ss_pred CcEEEEc
Q 023494 248 ANALVAG 254 (281)
Q Consensus 248 AD~~VvG 254 (281)
+|++.+-
T Consensus 297 ~d~v~~k 303 (422)
T 3tji_A 297 IDFIRCH 303 (422)
T ss_dssp CSEECCC
T ss_pred CCEEecC
Confidence 7877654
|
| >3ppg_A 5-methyltetrahydropteroyltriglutamate--homocystei methyltransferase; cobalamin-independent, surface entropy reduction; 1.98A {Candida albicans} PDB: 3ppf_A 3pph_A 3ppc_A | Back alignment and structure |
|---|
Probab=80.28 E-value=5.4 Score=40.91 Aligned_cols=95 Identities=19% Similarity=0.240 Sum_probs=47.7
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCc-ccccccCCH-------HHHHHcCcC-CCCC--eeEEEEecChhhHHHHHHHcCCC
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGR-FVPNITIGP-------LVVDALRPV-TDLP--LDVHLMIVEPEQRVPDFIKAGAD 140 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~-fvpn~~~G~-------~~I~~ir~~-t~~~--idaHLmv~dp~~~i~~~~~aGAd 140 (281)
+.++++.+.++|+++|++|--... ..|.- -|. ..++.++.. .+.+ ..+|+-++......+.+.+.++|
T Consensus 618 ~r~Ei~~L~~AG~r~IQiDEPal~e~l~~r-~g~d~~~~l~~av~a~n~a~~g~p~d~~I~tHiC~Gnf~~~~I~~l~aD 696 (789)
T 3ppg_A 618 LRDEVNDLEGAGITVIQVDEPAIREGLPLR-AGKERSDYLNWAAQSFRVATSGVENSTQIHSHFCYSDLDPNHIKALDAD 696 (789)
T ss_dssp HHHHHHHHHHTTCCEEEEECTTTGGGSCSS-SSHHHHHHHHHHHHHHHHHHSSSCTTSEEEEECC---CCHHHHHHHCCS
T ss_pred HHHHHHHHHHcCCCEEEEcccchhhccccc-ccCCHHHHHHHHHHHHHHHHhcCCCCcEEEEeccCCCCChhHHHhCCCC
Confidence 457778889999999999932110 01110 011 134444432 2222 33444443221112667789999
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEE
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGV 170 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl 170 (281)
.+++-+ + +... .+.++.+++.|.++|+
T Consensus 697 ~islE~-~-~Rs~-~e~L~~~~~~~k~V~l 723 (789)
T 3ppg_A 697 VVSIEF-S-KKDD-PNYIQEFSEYPNHIGL 723 (789)
T ss_dssp EEEEC------------CGGGGGCCSEEEE
T ss_pred EEEEec-C-CCcc-hHHHHHHHhcCCeEEe
Confidence 999885 3 1222 3556666666777766
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 281 | ||||
| d1rpxa_ | 230 | c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P | 3e-94 | |
| d1tqja_ | 221 | c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {S | 2e-81 | |
| d2flia1 | 217 | c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimera | 2e-75 | |
| d1h1ya_ | 220 | c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {R | 1e-59 | |
| d1tqxa_ | 221 | c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {P | 4e-59 | |
| d1q6oa_ | 213 | c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarbo | 7e-42 | |
| d1yxya1 | 230 | c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-p | 5e-10 | |
| d2czda1 | 206 | c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decar | 3e-08 | |
| d1y0ea_ | 222 | c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosph | 2e-07 | |
| d1w0ma_ | 226 | c.1.1.1 (A:) Triosephosphate isomerase {Thermoprot | 6e-06 | |
| d1km4a_ | 212 | c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxyl | 9e-06 | |
| d1xi3a_ | 206 | c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon | 1e-05 | |
| d1wa3a1 | 202 | c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga marit | 1e-05 | |
| d2tpsa_ | 226 | c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus | 2e-04 | |
| d1hg3a_ | 224 | c.1.1.1 (A:) Triosephosphate isomerase {Archaeon P | 0.001 |
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Score = 275 bits (705), Expect = 3e-94
Identities = 209/230 (90%), Positives = 222/230 (96%)
Query: 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVV 107
+RVDKFSKSDIIVSPSILSANF+KLGEQVKA+E AGCDWIHVDVMDGRFVPNITIGPLVV
Sbjct: 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVV 60
Query: 108 DALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK 167
D+LRP+TDLPLDVHLMIVEP+QRVPDFIKAGADIVSVHCEQSSTIHLHRT+NQIK LGAK
Sbjct: 61 DSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAK 120
Query: 168 AGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNP 227
AGVVLNP T L+AIE VLD VDLVLIMSVNPGFGGQSFIESQVKKISDLR++C E+G+NP
Sbjct: 121 AGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIESQVKKISDLRKICAERGLNP 180
Query: 228 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277
WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA DYAEAIKGIKTSKRP+
Sbjct: 181 WIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE 230
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Score = 242 bits (619), Expect = 2e-81
Identities = 151/220 (68%), Positives = 186/220 (84%)
Query: 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDL 116
+I+V+PSILSA+F++LGE++KAV+ AG DWIHVDVMDGRFVPNITIGPL+VDA+RP+T
Sbjct: 2 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKK 61
Query: 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPAT 176
LDVHLMIVEPE+ V DF KAGADI+SVH E +++ HLHRTL QI++LG KAG VLNP+T
Sbjct: 62 TLDVHLMIVEPEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPST 121
Query: 177 SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
L +E VL V DL+LIMSVNPGFGGQSFI + KI LR+MC E+G++PWIEVDGG+
Sbjct: 122 PLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRALRQMCDERGLDPWIEVDGGLK 181
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276
P N ++V+EAGANA+VAGSAVF A +YAEAI G++ SKRP
Sbjct: 182 PNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 221
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} Length = 217 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Score = 227 bits (580), Expect = 2e-75
Identities = 98/216 (45%), Positives = 147/216 (68%), Gaps = 2/216 (0%)
Query: 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLP 117
+ ++PSIL+A++A ++ +E +++H+D+MDG+FVPNI+ G VV ++R + L
Sbjct: 2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLV 61
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
D HLM+V+PE+ V F +AGADI+++H E T H+H L +IK G KAGVV+NP T
Sbjct: 62 FDCHLMVVDPERYVEAFAQAGADIMTIHTES--TRHIHGALQKIKAAGMKAGVVINPGTP 119
Query: 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP 237
+A+E +LD+VD VLIM+VNPGFGGQ+FI ++K++ + + EKG++ IEVDGGV
Sbjct: 120 ATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVAKWRDEKGLSFDIEVDGGVDN 179
Query: 238 KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
K EAGAN VAGS +F A D ++ ++T+
Sbjct: 180 KTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTA 215
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} Length = 220 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Score = 187 bits (475), Expect = 1e-59
Identities = 86/217 (39%), Positives = 123/217 (56%), Gaps = 8/217 (3%)
Query: 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLD 119
++PS+LS++FA L + + G DW+H+D+MDG FVPN+TIG V+ +LR T LD
Sbjct: 4 IAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLD 63
Query: 120 VHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLS 179
HLM+ P V KAGA + H E S + + IK G + GV L P T +
Sbjct: 64 CHLMVTNPSDYVEPLAKAGASGFTFHIE-VSRDNWQELIQSIKAKGMRPGVSLRPGTPVE 122
Query: 180 AI---ECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236
+ + V+LVL+M+V PGFGGQ F+ ++K+ LR+ + IEVDGG+G
Sbjct: 123 EVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP----SLDIEVDGGLG 178
Query: 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
P AGAN +VAGS++FGA + E I ++ S
Sbjct: 179 PSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKS 215
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} Length = 221 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Score = 186 bits (472), Expect = 4e-59
Identities = 75/218 (34%), Positives = 122/218 (55%), Gaps = 7/218 (3%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLP 117
I++PS+L++N +KL E+ + +E G +WIH+DVMD FVPN++ GP V++ L+ +
Sbjct: 4 IIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIF 63
Query: 118 LDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS 177
DVHLM+ PE+ VP + T + +I+D G+ + P T
Sbjct: 64 FDVHLMVEYPEKYVPLLKTSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTD 123
Query: 178 LSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV 235
+ + +LD +++ VL+M+V PGFGGQSF+ + K+S LR+ N I+VDGG+
Sbjct: 124 VQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK----NLNIQVDGGL 179
Query: 236 GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ GAN +VAG+++F A+D I ++ S
Sbjct: 180 NIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVS 217
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} Length = 213 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Score = 141 bits (355), Expect = 7e-42
Identities = 33/214 (15%), Positives = 73/214 (34%), Gaps = 14/214 (6%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTD--LPLDVH 121
++ + + + L VD+++ + + G V L+ + + L
Sbjct: 5 QVALDNQTMDSAYETTRLIA---EEVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADA 61
Query: 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAI 181
+ + +A AD V+V C + L+ K+ + L +
Sbjct: 62 KIADAGKILSRMCFEANADWVTVICC-ADINTAKGALDVAKEFNGDVQIELTGYWTWEQA 120
Query: 182 ECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN 239
+ D + +V S + G ++ E+ + I L + + V GG+ ++
Sbjct: 121 QQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRLSD------MGFKVTVTGGLALED 174
Query: 240 AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
+ +AG ++ A EA + K S
Sbjct: 175 LPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRS 208
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Score = 56.0 bits (134), Expect = 5e-10
Identities = 33/201 (16%), Positives = 67/201 (33%), Gaps = 13/201 (6%)
Query: 74 EQVKAVELAGCDWIHV-DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP 132
KA + AG I V D + + IT P++ + I V
Sbjct: 37 LMAKAAQEAGAVGIRANSVRDIKEIQAITDLPIIGIIKKDYPPQEP----FITATMTEVD 92
Query: 133 DFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVL 192
++++ C + + I+ + K L A + E ++ +
Sbjct: 93 QLAALNIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGID 152
Query: 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251
+ G + + L + G+ + +G + P+ A K+ + G +
Sbjct: 153 FVGTT-LSGYTPYSRQEAGPDVALIEALCKAGI--AVIAEGKIHSPEEAKKINDLGVAGI 209
Query: 252 VAGSAVFG----AKDYAEAIK 268
V G A+ A+ + EA+K
Sbjct: 210 VVGGAITRPKEIAERFIEALK 230
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Score = 50.3 bits (119), Expect = 3e-08
Identities = 28/174 (16%), Positives = 64/174 (36%), Gaps = 7/174 (4%)
Query: 103 GPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIK 162
G ++ L+ T + + L + +P+ + A V +H + +
Sbjct: 39 GVDIIRRLKEETGVEIIADLKL----ADIPNTNRLIARKVFGAGADYVIVHTFVGRDSVM 94
Query: 163 DLGAKAGVVLNPAT-SLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCL 221
+ +++ A+E + + D + ++ G ++ ++I +R
Sbjct: 95 AVKELGEIIMVVEMSHPGALEFINPLTDRFIEVANEIEPFGVIAPGTRPERIGYIRDRLK 154
Query: 222 EKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275
E + G A ++AGA+ ++ G A++ A + EA K I R
Sbjct: 155 EG--IKILAPGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} Length = 222 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Score = 48.7 bits (115), Expect = 2e-07
Identities = 29/211 (13%), Positives = 68/211 (32%), Gaps = 31/211 (14%)
Query: 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL---------DVHLMI 124
+ A G I + + A++ DLP+ + I
Sbjct: 27 KMALAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFI 74
Query: 125 VEPEQRVPDFIKAGADIVSVHCEQ--SSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182
+ V + I++ +++++ L ++ I+ ++ + AT A
Sbjct: 75 TATSKEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKN 134
Query: 183 CVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241
D I + G+ + + + + L+ I +G V P
Sbjct: 135 AARLGFDY--IGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVDAKVI-AEGNVITPDMYK 191
Query: 242 KVIEAGANALVAGSAV----FGAKDYAEAIK 268
+V++ G + V G A+ K + + ++
Sbjct: 192 RVMDLGVHCSVVGGAITRPKEITKRFVQVME 222
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Score = 44.1 bits (103), Expect = 6e-06
Identities = 24/179 (13%), Positives = 49/179 (27%), Gaps = 4/179 (2%)
Query: 96 FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLH 155
++ +G + PV DV + IK V S
Sbjct: 42 APNHLELGLVSQSVDIPVYAQGADVEAGGAHTAHVSLENIKEA-GGSGVILNHSEAPLKL 100
Query: 156 RTLNQIKDLGAKAG--VVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKI 213
L ++ G VV+ +++ V + G++ + + I
Sbjct: 101 NDLARLVAKAKSLGLDVVVCAPDPRTSLAAAALGPHAVAVEPPELIGTGRAVSRYKPEAI 160
Query: 214 SDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271
+ + + G+ + + G ++ SA AKD I +
Sbjct: 161 VETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELA 219
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 212 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Score = 43.4 bits (101), Expect = 9e-06
Identities = 35/220 (15%), Positives = 75/220 (34%), Gaps = 14/220 (6%)
Query: 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPL 118
+++ IL+ + + ++ V + + G ++ R +
Sbjct: 1 VMNRLILAMDLMNRDDALRVTGEVREYIDTVKIGYPLVLSE---GMDIIAEFRKRFGCRI 57
Query: 119 DVHLMIVE----PEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP 174
+ + E+ KAGAD + VH R + + + +L
Sbjct: 58 IADFAVADIPETNEKICRATFKAGADAIIVHG--FPGADSVRACLNVAEEMGREVFLLTE 115
Query: 175 ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234
+ A + D + M V+ G ++ +++S LR + + G
Sbjct: 116 MSHPGAEMFIQGAADEIARMGVDLGVKNYVGPSTRPERLSRLREII----GQDSFLISPG 171
Query: 235 VGPKNAYKV-IEAGANALVAGSAVFGAKDYAEAIKGIKTS 273
VG + A+A++ G +++ A + A A GI S
Sbjct: 172 VGAQGGDPGETLRFADAIIVGRSIYLADNPAAAAAGIIES 211
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} Length = 206 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Score = 43.3 bits (101), Expect = 1e-05
Identities = 32/208 (15%), Positives = 60/208 (28%), Gaps = 20/208 (9%)
Query: 64 ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLM 123
I E V+ G I + + + IG + R D V
Sbjct: 11 ITDRRLKPEVESVREALEGGATAIQMRIKNAPTREMYEIGKTLRQLTRE-YDALFFVDDR 69
Query: 124 IVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183
+ D V + + + A+E
Sbjct: 70 VDVALAVDADG---------VQLGPEDMPIEVAKEI-----APNLIIGASVYSLEEALEA 115
Query: 184 VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKV 243
D + SV P + ++ + + P + GG+ NA +V
Sbjct: 116 EKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV----KIPVV-AIGGINKDNAREV 170
Query: 244 IEAGANALVAGSAVFGAKDYAEAIKGIK 271
++ G + + SAV GA+D +A + ++
Sbjct: 171 LKTGVDGIAVISAVMGAEDVRKATEELR 198
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} Length = 202 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Score = 42.7 bits (100), Expect = 1e-05
Identities = 31/195 (15%), Positives = 64/195 (32%), Gaps = 23/195 (11%)
Query: 95 RFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ----SS 150
+ V + V+ + + + ++E VPD ++ + + +
Sbjct: 10 KIVAVLRANS--VEEAKEKALAVFEGGVHLIEITFTVPDADTVIKELSFLKEKGAIIGAG 67
Query: 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP-------GFGGQ 203
T+ + + GA+ V + +S V + +M+ G
Sbjct: 68 TVTSVEQCRKAVESGAEFIVSPHLDEEISQFCKEKGVFYMPGVMTPTELVKAMKLGHTIL 127
Query: 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG---- 259
+V ++ M ++ GGV N + +AG A+ GSA+
Sbjct: 128 KLFPGEVVGPQFVKAMKGPFPNVKFVPT-GGVNLDNVCEWFKAGVLAVGVGSALVKGTPD 186
Query: 260 -----AKDYAEAIKG 269
AK + E I+G
Sbjct: 187 EVREKAKAFVEKIRG 201
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} Length = 226 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 26/132 (19%), Positives = 58/132 (43%)
Query: 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG 199
D+ ++ IH+ + K++ A G ++ ++ + E D + + P
Sbjct: 85 DVELALNLKADGIHIGQEDANAKEVRAAIGDMILGVSAHTMSEVKQAEEDGADYVGLGPI 144
Query: 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259
+ ++ +++ + L +G++ I GG+ NA VI+AGA+ + SA+
Sbjct: 145 YPTETKKDTRAVQGVSLIEAVRRQGISIPIVGIGGITIDNAAPVIQAGADGVSMISAISQ 204
Query: 260 AKDYAEAIKGIK 271
A+D A + +
Sbjct: 205 AEDPESAARKFR 216
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Score = 37.3 bits (85), Expect = 0.001
Identities = 16/86 (18%), Positives = 32/86 (37%), Gaps = 1/86 (1%)
Query: 189 DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAG 247
D V + G +++ + I++ + + + G+ K IE G
Sbjct: 138 DYVAVEPPELIGTGIPVSKAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELG 197
Query: 248 ANALVAGSAVFGAKDYAEAIKGIKTS 273
++ S V AKD +AI + +
Sbjct: 198 TVGVLLASGVTKAKDPEKAIWDLVSG 223
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 281 | |||
| d1rpxa_ | 230 | D-ribulose-5-phosphate 3-epimerase {Potato (Solanu | 100.0 | |
| d1tqja_ | 221 | D-ribulose-5-phosphate 3-epimerase {Synechocystis | 100.0 | |
| d2flia1 | 217 | D-ribulose-5-phosphate 3-epimerase {Streptococcus | 100.0 | |
| d1h1ya_ | 220 | D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa | 100.0 | |
| d1tqxa_ | 221 | D-ribulose-5-phosphate 3-epimerase {Plasmodium fal | 100.0 | |
| d1q6oa_ | 213 | 3-keto-L-gulonate 6-phosphate decarboxylase {Esche | 99.97 | |
| d2czda1 | 206 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 99.79 | |
| d1km4a_ | 212 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 99.77 | |
| d1rd5a_ | 261 | Trp synthase alpha-subunit {Maize (Zea mays) [TaxI | 99.71 | |
| d1qopa_ | 267 | Trp synthase alpha-subunit {Salmonella typhimurium | 99.7 | |
| d1xi3a_ | 206 | Thiamin phosphate synthase {Archaeon (Pyrococcus f | 99.69 | |
| d1geqa_ | 248 | Trp synthase alpha-subunit {Archaeon Pyrococcus fu | 99.68 | |
| d1ujpa_ | 271 | Trp synthase alpha-subunit {Thermus thermophilus [ | 99.66 | |
| d1eixa_ | 231 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 99.66 | |
| d1dbta_ | 237 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 99.54 | |
| d2tpsa_ | 226 | Thiamin phosphate synthase {Bacillus subtilis [Tax | 99.52 | |
| d1vqta1 | 198 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 99.25 | |
| d1y0ea_ | 222 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.21 | |
| d1w0ma_ | 226 | Triosephosphate isomerase {Thermoproteus tenax [Ta | 99.18 | |
| d1yxya1 | 230 | Putative N-acetylmannosamine-6-phosphate 2-epimera | 99.08 | |
| d1dqwa_ | 267 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 98.92 | |
| d1hg3a_ | 224 | Triosephosphate isomerase {Archaeon Pyrococcus woe | 98.81 | |
| d1wa3a1 | 202 | KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | 98.8 | |
| d1vc4a_ | 254 | Indole-3-glycerophosphate synthase, IPGS {Thermus | 98.76 | |
| d1a53a_ | 247 | Indole-3-glycerophosphate synthase, IPGS {Archaeon | 98.71 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.66 | |
| d1vhca_ | 212 | Hypothetical protein HI0047 {Haemophilus influenza | 98.61 | |
| d1piia2 | 254 | Indole-3-glycerophosphate synthase, IPGS {Escheric | 98.59 | |
| d1i4na_ | 251 | Indole-3-glycerophosphate synthase, IPGS {Thermoto | 98.58 | |
| d1wbha1 | 213 | KDPG aldolase {Escherichia coli [TaxId: 562]} | 98.56 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.55 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 98.47 | |
| d1twda_ | 247 | Copper homeostasis protein CutC {Shigella flexneri | 98.44 | |
| d1mxsa_ | 216 | KDPG aldolase {Pseudomonas putida [TaxId: 303]} | 98.34 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 98.29 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 98.17 | |
| d1izca_ | 299 | Macrophomate synthase {Macrophoma commelinae [TaxI | 98.14 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 98.02 | |
| d1dxea_ | 253 | 2-dehydro-3-deoxy-galactarate aldolase {Escherichi | 97.99 | |
| d1viza_ | 229 | PcrB protein homolog YerE {Bacillus subtilis [TaxI | 97.99 | |
| d1znna1 | 254 | Pyridoxal biosynthesis lyase PdxS {Bacillus stearo | 97.97 | |
| d1gtea2 | 312 | Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su | 97.91 | |
| d2ffca1 | 332 | Orotidine 5'-monophosphate decarboxylase (OMP deca | 97.89 | |
| d1qapa1 | 167 | Quinolinic acid phosphoribosyltransferase (Nicotin | 97.82 | |
| d1piia1 | 198 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {E | 97.78 | |
| d2f6ua1 | 231 | (S)-3-O-geranylgeranylglyceryl phosphate synthase | 97.74 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 97.72 | |
| d2fdsa1 | 324 | Protozoan orotidine monophosphate decarboxylase {P | 97.72 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 97.63 | |
| d2q8za1 | 323 | Protozoan orotidine monophosphate decarboxylase {P | 97.58 | |
| d1nsja_ | 205 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 97.57 | |
| d2b4ga1 | 312 | Dihydroorotate dehydrogenase {Trypanosoma brucei [ | 97.54 | |
| d1wv2a_ | 243 | Thiazole biosynthesis protein ThiG {Pseudomonas ae | 97.53 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 97.5 | |
| d1juba_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 97.48 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 97.47 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 97.44 | |
| d1xm3a_ | 251 | Thiazole biosynthesis protein ThiG {Bacillus subti | 97.38 | |
| d1r30a_ | 312 | Biotin synthase {Escherichia coli [TaxId: 562]} | 97.33 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 97.29 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 97.23 | |
| d1v5xa_ | 200 | N-(5'phosphoribosyl)antranilate isomerase, PRAI {T | 97.2 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 97.01 | |
| d1ep3a_ | 311 | Dihydroorotate dehydrogenase {Lactococcus lactis, | 96.99 | |
| d1ojxa_ | 251 | Archaeal fructose 1,6-bisphosphate aldolase {Archa | 96.97 | |
| d1ykwa1 | 283 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {C | 96.84 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 96.81 | |
| d1thfd_ | 253 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.72 | |
| d1ka9f_ | 251 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.71 | |
| d1h5ya_ | 252 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.66 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 96.59 | |
| d1jvna1 | 323 | Cyclase subunit (or domain) of imidazoleglycerolph | 96.4 | |
| d1gqna_ | 252 | Type I 3-dehydroquinate dehydratase {Salmonella ty | 96.38 | |
| d1nvma2 | 289 | 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d | 96.13 | |
| d1icpa_ | 364 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 96.1 | |
| d1vyra_ | 363 | Pentaerythritol tetranirate reductase {Enterobacte | 96.09 | |
| d1vzwa1 | 239 | Phosphoribosylformimino-5-aminoimidazole carboxami | 96.05 | |
| d1qo2a_ | 241 | Phosphoribosylformimino-5-aminoimidazole carboxami | 95.91 | |
| d1p0ka_ | 329 | Isopentenyl-diphosphate delta-isomerase {Bacillus | 95.9 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 95.87 | |
| d1m5wa_ | 242 | Pyridoxine 5'-phosphate synthase {Escherichia coli | 95.6 | |
| d1pkla2 | 258 | Pyruvate kinase, N-terminal domain {Leishmania mex | 95.29 | |
| d2btma_ | 251 | Triosephosphate isomerase {Bacillus stearothermoph | 95.25 | |
| d1vhna_ | 305 | Putative flavin oxidoreducatase TM0096 {Thermotoga | 95.19 | |
| d1djqa1 | 340 | Trimethylamine dehydrogenase, N-terminal domain {M | 95.18 | |
| d1d3ga_ | 367 | Dihydroorotate dehydrogenase {Human (Homo sapiens) | 95.16 | |
| d1trea_ | 255 | Triosephosphate isomerase {Escherichia coli [TaxId | 94.97 | |
| d1vcfa1 | 310 | Isopentenyl-diphosphate delta-isomerase {Thermus t | 94.95 | |
| d1rvga_ | 305 | Fructose-bisphosphate aldolase (FBP aldolase) {The | 94.95 | |
| d1n55a_ | 249 | Triosephosphate isomerase {Leishmania mexicana [Ta | 94.86 | |
| d1vrda1 | 330 | Inosine monophosphate dehydrogenase (IMPDH) {Therm | 94.8 | |
| d1gwja_ | 374 | Morphinone reductase {Pseudomonas putida [TaxId: 3 | 94.78 | |
| d1vkfa_ | 172 | Glycerol uptake operon antiterminator-related prot | 94.74 | |
| d1e0ta2 | 246 | Pyruvate kinase, N-terminal domain {Escherichia co | 94.65 | |
| d1a3xa2 | 265 | Pyruvate kinase, N-terminal domain {Baker's yeast | 94.4 | |
| d1m6ja_ | 260 | Triosephosphate isomerase {Entamoeba histolytica [ | 94.36 | |
| d1o5xa_ | 246 | Triosephosphate isomerase {Plasmodium falciparum [ | 94.31 | |
| d1q45a_ | 380 | 12-oxophytodienoate reductase (OPR, OYE homolog) { | 94.24 | |
| d1f76a_ | 336 | Dihydroorotate dehydrogenase {Escherichia coli [Ta | 94.07 | |
| d1kv5a_ | 249 | Triosephosphate isomerase {Trypanosoma brucei [Tax | 93.95 | |
| d1ea0a2 | 771 | Alpha subunit of glutamate synthase, central and F | 93.8 | |
| d1tv5a1 | 409 | Dihydroorotate dehydrogenase {Plasmodium falciparu | 93.8 | |
| d1r2ra_ | 246 | Triosephosphate isomerase {Rabbit (Oryctolagus cun | 93.7 | |
| d1to3a_ | 291 | Putative aldolase YihT {Salmonella typhimurium [Ta | 93.65 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 93.53 | |
| d1tb3a1 | 349 | Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxI | 93.33 | |
| d2g50a2 | 282 | Pyruvate kinase, N-terminal domain {Rabbit (Orycto | 93.33 | |
| d1f6ya_ | 262 | Methyltetrahydrofolate: corrinoid/iron-sulfur prot | 93.02 | |
| d1kbia1 | 414 | Flavocytochrome b2, C-terminal domain {Baker's yea | 92.88 | |
| d1mo0a_ | 257 | Triosephosphate isomerase {Nematode (Caenorhabditi | 92.59 | |
| d1b9ba_ | 252 | Triosephosphate isomerase {Thermotoga maritima [Ta | 92.49 | |
| d1ccwa_ | 137 | Glutamate mutase, small subunit {Clostridium cochl | 92.43 | |
| d1vpxa_ | 218 | Decameric fructose-6-phosphate aldolase/transaldol | 92.38 | |
| d1ofda2 | 809 | Alpha subunit of glutamate synthase, central and F | 92.06 | |
| d1goxa_ | 359 | Glycolate oxidase {Spinach (Spinacia oleracea) [Ta | 91.99 | |
| d1jpma1 | 234 | L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: | 91.69 | |
| d1aw1a_ | 255 | Triosephosphate isomerase {Vibrio marinus [TaxId: | 91.31 | |
| d2d69a1 | 291 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 90.82 | |
| d7reqa2 | 168 | Methylmalonyl-CoA mutase alpha subunit, C-terminal | 90.8 | |
| d1neya_ | 247 | Triosephosphate isomerase {Baker's yeast (Saccharo | 90.77 | |
| d1pvna1 | 362 | Inosine monophosphate dehydrogenase (IMPDH) {Tritr | 90.11 | |
| d1zfja1 | 365 | Inosine monophosphate dehydrogenase (IMPDH) {Strep | 90.06 | |
| d1p4ca_ | 353 | Membrane-associated (S)-mandelate dehydrogenase {P | 89.77 | |
| d1jr1a1 | 378 | Inosine monophosphate dehydrogenase (IMPDH) {Chine | 89.13 | |
| d1rqba2 | 303 | Transcarboxylase 5S subunit, N-terminal domain {Pr | 89.11 | |
| d3bofa1 | 260 | Cobalamin-dependent methionine synthase MetH, C-te | 89.08 | |
| d1ytda1 | 270 | Nicotinate phosphoribosyltransferase Ta1145 {Therm | 88.77 | |
| d1eepa_ | 388 | Inosine monophosphate dehydrogenase (IMPDH) {Lyme | 88.39 | |
| d1n7ka_ | 234 | Deoxyribose-phosphate aldolase DeoC {Archaeon Aero | 87.72 | |
| d1yx1a1 | 250 | Hypothetical protein PA2260 {Pseudomonas aeruginos | 87.46 | |
| d1zcca1 | 240 | Glycerophosphodiester phosphodiesterase UgpQ {Agro | 87.32 | |
| d1wx0a1 | 211 | Decameric fructose-6-phosphate aldolase/transaldol | 87.0 | |
| d1tzza1 | 247 | Hypothetical protein Bll6730 {Bradyrhizobium japon | 86.81 | |
| d1z41a1 | 337 | NADPH dehydrogenase NamA {Bacillus subtilis [TaxId | 85.95 | |
| d1xkya1 | 292 | Dihydrodipicolinate synthase {Bacillus anthracis [ | 85.76 | |
| d1ps9a1 | 330 | 2,4-dienoyl-CoA reductase, N-terminal domain {Esch | 85.07 | |
| d1hl2a_ | 295 | N-acetylneuraminate lyase {Escherichia coli [TaxId | 84.8 | |
| d1l6wa_ | 220 | Decameric fructose-6-phosphate aldolase/transaldol | 84.75 | |
| d1l6sa_ | 323 | 5-aminolaevulinate dehydratase, ALAD (porphobilino | 84.45 | |
| d2q02a1 | 271 | Putative cytoplasmic protein STM4435 {Salmonella t | 84.18 | |
| d1qpoa1 | 169 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.96 | |
| d1olta_ | 441 | Oxygen-independent coproporphyrinogen III oxidase | 83.82 | |
| d1geha1 | 307 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {A | 83.77 | |
| d1o4ua1 | 170 | Quinolinic acid phosphoribosyltransferase (Nicotin | 83.6 | |
| d1ub3a_ | 211 | Deoxyribose-phosphate aldolase DeoC {Thermus therm | 83.59 | |
| d2chra1 | 244 | Chlormuconate cycloisomerase {Alcaligenes eutrophu | 83.4 | |
| d1x7fa2 | 244 | Outer surface protein, N-terminal domain {Bacillus | 83.17 | |
| d1mb3a_ | 123 | Cell division response regulator DivK {Caulobacter | 83.02 | |
| d1gvfa_ | 284 | Tagatose-1,6-bisphosphate aldolase {Escherichia co | 82.63 | |
| d1vhka2 | 180 | Hypothetical protein YqeU {Bacillus subtilis [TaxI | 82.63 | |
| d1i60a_ | 278 | Hypothetical protein IolI {Bacillus subtilis [TaxI | 82.41 | |
| d1mzha_ | 225 | Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli | 81.95 | |
| d2g0wa1 | 275 | Hypothetical protein Lmo2234 {Listeria monocytogen | 81.66 | |
| d2mnra1 | 227 | Mandelate racemase {Pseudomonas putida [TaxId: 303 | 81.39 | |
| d1oyaa_ | 399 | Old yellow enzyme (OYE) {Lager yeast (Saccharomyce | 81.3 | |
| d1a04a2 | 138 | Nitrate/nitrite response regulator (NarL), receive | 80.85 | |
| d2cu0a1 | 368 | Inosine monophosphate dehydrogenase (IMPDH) {Pyroc | 80.79 | |
| d2zdra2 | 280 | Capsule biosynthesis protein SiaC, N-terminal doma | 80.55 | |
| d1wdda1 | 325 | Ribulose 1,5-bisphosphate carboxylase-oxygenase {R | 80.4 | |
| d1w25a1 | 139 | Response regulator PleD, receiver domain {Caulobac | 80.07 |
| >d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Potato (Solanum tuberosum) [TaxId: 4113]
Probab=100.00 E-value=7.6e-66 Score=458.35 Aligned_cols=230 Identities=91% Similarity=1.372 Sum_probs=222.2
Q ss_pred cccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh
Q 023494 48 ARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP 127 (281)
Q Consensus 48 ~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp 127 (281)
.|++++++++++|+|||+|+|+.+|+++++.++++|+||+|+|||||+||||++||+..++++|+.+++++|+|||+.||
T Consensus 1 ~~~~~~~~~~~~IspSIl~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~~~v~~i~~~t~~~~dvHLMv~~P 80 (230)
T d1rpxa_ 1 SRVDKFSKSDIIVSPSILSANFSKLGEQVKAIEQAGCDWIHVDVMDGRFVPNITIGPLVVDSLRPITDLPLDVHLMIVEP 80 (230)
T ss_dssp CGGGGSCTTSCEEEEBGGGSCGGGHHHHHHHHHHTTCCCEEEEEEBSSSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSH
T ss_pred CCccccccCCeEEEcchhhcCHHHHHHHHHHHHHcCCCEEEEeCccCCcCCccccChHHHhhhhhccCceeeeeeeecch
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
.+|++.+.++|+|.++||+|+.+..++.++++.+|++|+++|++|||+||++.+++|++.+|+|++|+|+|||+||+|.+
T Consensus 81 ~~~i~~~~~~g~~~i~~H~E~~~~~~~~~~i~~ik~~g~k~Gialnp~T~~~~l~~~l~~vD~VllM~V~PGf~GQ~f~~ 160 (230)
T d1rpxa_ 81 DQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIKSLGAKAGVVLNPGTPLTAIEYVLDAVDLVLIMSVNPGFGGQSFIE 160 (230)
T ss_dssp HHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHHHTTSEEEEEECTTCCGGGGTTTTTTCSEEEEESSCTTCSSCCCCT
T ss_pred hhhHHHHhhcccceeEEeccccccccHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHHhhCCEEEEEEecCCcccchhhh
Confidence 99999999999999999999754557999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcC
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQ 277 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~ 277 (281)
.+++||++++++++++++++.|+||||||.+|++.+.++|||.+|+||+||+++||++++++||+..+.+
T Consensus 161 ~~~~kI~~~~~~~~~~~~~~~I~vDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lk~~~~~e 230 (230)
T d1rpxa_ 161 SQVKKISDLRKICAERGLNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAPDYAEAIKGIKTSKRPE 230 (230)
T ss_dssp THHHHHHHHHHHHHHHTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCCCC
T ss_pred hhHHHHHHHHHHHHhcCCceEEEEECCcCHHHHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999887753
|
| >d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Synechocystis sp. PCC 6803 [TaxId: 1148]
Probab=100.00 E-value=3.3e-63 Score=439.16 Aligned_cols=220 Identities=69% Similarity=1.131 Sum_probs=208.2
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
+++|||||+|+|+.+|++++++++++|+||+|+|||||+|+||++||+..++.+|+.|++++|+|||+.||.+|++.+.+
T Consensus 2 ~~~IspSil~~d~~~l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~~~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~ 81 (221)
T d1tqja_ 2 NIVVAPSILSADFSRLGEEIKAVDEAGADWIHVDVMDGRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAK 81 (221)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHH
T ss_pred CcEEEechhccCHHHHHHHHHHHHHcCCCEEEEECccCCccCccccCcHhHHhhhhccCcceeeeEEEeCHHHHHHHHhh
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+|++.++||.|+.+..++.++++.++++|+++|++++|+|+++.++++++.+|+|++|+|+|||+||+|.+.+++||+++
T Consensus 82 ~g~~~i~~H~E~~~~~~~~~~~~~i~~~g~~~Gial~p~T~~~~l~~~l~~~d~vlvM~V~pG~~GQ~f~~~~~~ki~~l 161 (221)
T d1tqja_ 82 AGADIISVHVEHNASPHLHRTLCQIRELGKKAGAVLNPSTPLDFLEYVLPVCDLILIMSVNPGFGGQSFIPEVLPKIRAL 161 (221)
T ss_dssp HTCSEEEEECSTTTCTTHHHHHHHHHHTTCEEEEEECTTCCGGGGTTTGGGCSEEEEESSCC----CCCCGGGHHHHHHH
T ss_pred ccceEEEEeeccccChhhHHHHHHHHHCCCCEEEEecCCCcHHHHHHHHhhhcEEEEEEecCCCCCcccchhhHHHHHHH
Confidence 99999999999644556899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
++++.++++++.|+||||||.+|++.++++|||.+|+||+||+++||++++++||+..++
T Consensus 162 ~~~~~~~~~~~~I~VDGGIn~~~i~~l~~~Gad~~V~GS~if~~~d~~~~i~~lr~~~~~ 221 (221)
T d1tqja_ 162 RQMCDERGLDPWIEVDGGLKPNNTWQVLEAGANAIVAGSAVFNAPNYAEAIAGVRNSKRP 221 (221)
T ss_dssp HHHHHHHTCCCEEEEESSCCTTTTHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHTCCC-
T ss_pred HhhhhccccceEEEEECCcCHHHHHHHHHcCCCEEEEChHHhCCCCHHHHHHHHHhccCC
Confidence 999999999999999999999999999999999999999999999999999999987664
|
| >d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Streptococcus pyogenes [TaxId: 1314]
Probab=100.00 E-value=1.6e-62 Score=433.66 Aligned_cols=215 Identities=46% Similarity=0.767 Sum_probs=209.7
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
++|||||+|+|+.+|+++++.++++|+||+|+|||||+|+||++||++.++.+|+.+++++|+|||+.||.+|++.+.++
T Consensus 2 ~kIspSil~~d~~~l~~~i~~~~~~g~d~iHiDimDg~Fvpn~s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ 81 (217)
T d2flia1 2 LKIAPSILAADYANFASELARIEETDAEYVHIDIMDGQFVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQA 81 (217)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCCEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHH
T ss_pred cEEEeehhhcCHHHHHHHHHHHHHcCCCEEEEEcccCcCCCccccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||.|+||+|+ ..++.++++.++++|+++|++++|+|+++.++++++.+|+|++|+|+|||+||+|.+.+++||++++
T Consensus 82 ga~~i~~H~E~--~~~~~~~i~~i~~~g~~~Gial~p~T~~~~~~~~l~~id~vliM~V~pG~~Gq~f~~~~~~ki~~l~ 159 (217)
T d2flia1 82 GADIMTIHTES--TRHIHGALQKIKAAGMKAGVVINPGTPATALEPLLDLVDQVLIMTVNPGFGGQAFIPECLEKVATVA 159 (217)
T ss_dssp TCSEEEEEGGG--CSCHHHHHHHHHHTTSEEEEEECTTSCGGGGGGGTTTCSEEEEESSCTTCSSCCCCGGGHHHHHHHH
T ss_pred CCcEEEecccc--ccCHHHHHHHHHhcCCeEEEEecCCcchhHHHhHHhhcCEEEEEEEcCcccccccchhhHHHHHHHH
Confidence 99999999996 5679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 218 RMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
+++++++++++|+||||||.+|++.++++|||++|+||+||+++||++++++||+.+
T Consensus 160 ~~~~~~~~~~~I~vDGGIn~~~i~~l~~aGad~~V~Gsaif~~~d~~~~i~~lr~~i 216 (217)
T d2flia1 160 KWRDEKGLSFDIEVDGGVDNKTIRACYEAGANVFVAGSYLFKASDLVSQVQTLRTAL 216 (217)
T ss_dssp HHHHHTTCCCEEEEESSCCTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHhcCCCeEEEEeCCCCHHHHHHHHHCCCCEEEEchHHhCCCCHHHHHHHHHHhh
Confidence 999998999999999999999999999999999999999999999999999999865
|
| >d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=100.00 E-value=9.1e-60 Score=416.70 Aligned_cols=214 Identities=40% Similarity=0.681 Sum_probs=202.6
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+|+|||+|+|+.+|+++++++++.|+||+|+|||||+||||++||++.++++|+.++.++|+|||+.||.+|++.+.++
T Consensus 2 ~kI~pSil~ad~~~l~~ei~~l~~~~~d~iHiDimDg~Fvpn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~ 81 (220)
T d1h1ya_ 2 AKIAPSMLSSDFANLAAEADRMVRLGADWLHMDIMDGHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKA 81 (220)
T ss_dssp CEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHH
T ss_pred cEEEhhhhhcCHHHHHHHHHHHHHcCCCEEEEeeecCccccccccCchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhc
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc---cCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD---VVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~---~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
|++.|+||.|+. ..++.++++.+++.|+++|++++|+||++.++++++ .+|+|++|+|+|||+||+|.+.+++||+
T Consensus 82 g~~~I~~H~E~~-~~~~~~~i~~i~~~g~~~Glal~p~t~~~~~~~~l~~~~~~d~vlim~v~PG~~GQ~f~~~~l~kI~ 160 (220)
T d1h1ya_ 82 GASGFTFHIEVS-RDNWQELIQSIKAKGMRPGVSLRPGTPVEEVFPLVEAENPVELVLVMTVEPGFGGQKFMPEMMEKVR 160 (220)
T ss_dssp TCSEEEEEGGGC-TTTHHHHHHHHHHTTCEEEEEECTTSCGGGGHHHHHSSSCCSEEEEESSCTTCSSCCCCGGGHHHHH
T ss_pred ccceeeeccccc-chhHHHHHHHHHHcCCCcceeeccccchhHHHHHHhcccccceEEEEecCCCCcccccchhhhHHHH
Confidence 999999999973 466889999999999999999999999998888875 4799999999999999999999999999
Q ss_pred HHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCc
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRP 276 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~ 276 (281)
++|+.. .+++|+||||||.+|++.+.++|||.+|+||+||+++||.+.+++||+.++.
T Consensus 161 ~l~~~~----~~~~I~VDGGIn~~~i~~l~~aGad~~V~GS~if~~~d~~~~i~~lr~~~~~ 218 (220)
T d1h1ya_ 161 ALRKKY----PSLDIEVDGGLGPSTIDVAASAGANCIVAGSSIFGAAEPGEVISALRKSVEG 218 (220)
T ss_dssp HHHHHC----TTSEEEEESSCSTTTHHHHHHHTCCEEEESHHHHTSSCHHHHHHHHHHHHHH
T ss_pred HHHhcC----CCceEEEEecCCHHHHHHHHHCCCCEEEECHHHHCCCCHHHHHHHHHHHHHh
Confidence 998764 4689999999999999999999999999999999999999999999997753
|
| >d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: D-ribulose-5-phosphate 3-epimerase domain: D-ribulose-5-phosphate 3-epimerase species: Plasmodium falciparum [TaxId: 5833]
Probab=100.00 E-value=1.5e-59 Score=415.62 Aligned_cols=215 Identities=35% Similarity=0.596 Sum_probs=200.7
Q ss_pred CceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHH
Q 023494 57 DIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFI 135 (281)
Q Consensus 57 ~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~ 135 (281)
+.+|||||+|+|+.+|+++++++++.|+||+|+|||||+||||++||+..++++|+. ++.++|+|||+.||.+|++.+.
T Consensus 2 ~~iIspSil~~d~~~l~~~i~~l~~~~~d~iHiDimDG~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~ 81 (221)
T d1tqxa_ 2 KAIIAPSVLASNISKLAEETQRMESLGAEWIHLDVMDMHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLK 81 (221)
T ss_dssp CCEEEEBGGGSCGGGHHHHHHHHHHTTCSEEEEEEEBSSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCT
T ss_pred cceeehhhhccCHHHHHHHHHHHHHcCCCEEEEECccCcCcCccccChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhh
Confidence 457999999999999999999999999999999999999999999999999999997 6789999999999999999999
Q ss_pred HcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHH
Q 023494 136 KAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKI 213 (281)
Q Consensus 136 ~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI 213 (281)
++|++.+++|.|.....++.+.++.+|++|+++|++++|.|+++.+.++++ .+|+|++|+|+|||+||+|.+.+++||
T Consensus 82 ~~~~~~i~~~~~~~~~~~~~~~i~~i~~~g~~~Gial~p~t~~~~~~~~l~~~~~d~vlim~V~pG~~GQ~f~~~~l~KI 161 (221)
T d1tqxa_ 82 TSNQLTFHFEALNEDTERCIQLAKEIRDNNLWCGISIKPKTDVQKLVPILDTNLINTVLVMTVEPGFGGQSFMHDMMGKV 161 (221)
T ss_dssp TSSEEEEEGGGGTTCHHHHHHHHHHHHTTTCEEEEEECTTSCGGGGHHHHTTTCCSEEEEESSCTTCSSCCCCGGGHHHH
T ss_pred hcCceeEEeehhccccchhhHHHHHHHhcCCeEEEeeccccccccchhhcccccccEEEEEeecccccccccCcchhHHH
Confidence 999999999987533445667889999999999999999999999999984 599999999999999999999999999
Q ss_pred HHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 214 SDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 214 ~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+++|++.+ ++.|+||||||.+|++.+.++|||.+|+||+||+++||++++++||+.++
T Consensus 162 ~~lr~~~~----~~~I~VDGGIn~~~i~~l~~aGad~iV~GS~if~~~d~~~~i~~Lr~~i~ 219 (221)
T d1tqxa_ 162 SFLRKKYK----NLNIQVDGGLNIETTEISASHGANIIVAGTSIFNAEDPKYVIDTMRVSVQ 219 (221)
T ss_dssp HHHHHHCT----TCEEEEESSCCHHHHHHHHHHTCCEEEESHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHhcC----CcceEEEcccCHHhHHHHHHcCCCEEEEChHHHCCCCHHHHHHHHHHHHh
Confidence 99998754 57899999999999999999999999999999999999999999998764
|
| >d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: 3-keto-L-gulonate 6-phosphate decarboxylase species: Escherichia coli [TaxId: 562]
Probab=99.97 E-value=7e-32 Score=231.07 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=179.2
Q ss_pred EEE-eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcC
Q 023494 62 PSI-LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAG 138 (281)
Q Consensus 62 pSi-la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aG 138 (281)
|.| +|+|+.++++.++.+++.+. |+|+++.+|.+++++|++.++.||+. ++.++.+|+|+.|+..+ .+.+.++|
T Consensus 2 p~l~vAlD~~~~~~~~~~~~~~~~---~vdiikig~~~~~~~G~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~g 78 (213)
T d1q6oa_ 2 PMLQVALDNQTMDSAYETTRLIAE---EVDIIEVGTILCVGEGVRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEAN 78 (213)
T ss_dssp CEEEEEECCSSHHHHHHHHHHHGG---GCSEEEECHHHHHHHCTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTT
T ss_pred CcEEEEecCCCHHHHHHHHHhcCC---CccEEEeCeeccccCCHHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcC
Confidence 455 78899999999999998764 78999999999999999999999986 67899999999998866 56788999
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEE-EEEeecCCCCCCccchhHHHHHHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLV-LIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~I-lvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
||++|+|.+.. .+.+.++++.++++|.++++.+.+.++.+...++... ++.+ +.|+.++|+.||.+.+..++++++.
T Consensus 79 ad~vtvh~~~g-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~i~~~ 157 (213)
T d1q6oa_ 79 ADWVTVICCAD-INTAKGALDVAKEFNGDVQIELTGYWTWEQAQQWRDAGIGQVVYHRSRDAQAAGVAWGEADITAIKRL 157 (213)
T ss_dssp CSEEEEETTSC-HHHHHHHHHHHHHTTCEEEEEECSCCCHHHHHHHHHTTCCEEEEECCHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCEEEEeccCC-chHHHHHHHHHHHcCCceecccCCCCCHHHHHHHHHhHHHHHHHHHhcccCcCCeeCCHHHHHHHHHh
Confidence 99999999973 5668899999999999999999988898888777654 5554 5577889999999999888888777
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.. ++++.+|||++.++++++.++|||++|+||+||+++||.++++++++.++
T Consensus 158 ~~~------~~~i~~~gGi~~~~~~~~~~~Gad~iVVGr~I~~a~dp~~a~~~~~~~i~ 210 (213)
T d1q6oa_ 158 SDM------GFKVTVTGGLALEDLPLFKGIPIHVFIAGRSIRDAASPVEAARQFKRSIA 210 (213)
T ss_dssp HHT------TCEEEEESSCCGGGGGGGTTSCCSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred hcc------CceEecCCCcCcCCHHHHHHcCCCEEEEChhhcCCCCHHHHHHHHHHHHH
Confidence 642 47899999999999999999999999999999999999999999998765
|
| >d2czda1 c.1.2.3 (A:1-206) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.79 E-value=2.5e-20 Score=160.70 Aligned_cols=194 Identities=22% Similarity=0.225 Sum_probs=132.9
Q ss_pred EeccCccCHHHHHHHHHHc--CCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChh----hHHHHHHH
Q 023494 64 ILSANFAKLGEQVKAVELA--GCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPE----QRVPDFIK 136 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~--G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~----~~i~~~~~ 136 (281)
++|+|+.+++++++.+++. .++|+++ | +|.+ ++|++.+++|++.+++++.+|+++.|.. .+++.+.+
T Consensus 3 ~vALD~~~~~~a~~~~~~l~~~v~~iKv----G--~~l~~~~G~~~i~~l~~~~~~~if~DlK~~Di~~t~~~~~~~~~~ 76 (206)
T d2czda1 3 VLALDVYEGERAIKIAKSVKDYISMIKV----N--WPLILGSGVDIIRRLKEETGVEIIADLKLADIPNTNRLIARKVFG 76 (206)
T ss_dssp EEECCCCSHHHHHHHHHHHGGGCSEEEE----E--HHHHHHHCTTHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHH
T ss_pred EEEeCCCCHHHHHHHHHHhCCcccEEEE----C--HHHHhhcCHHHHHHHHHhcCCeEEEEeeeeeecccchheehhhcc
Confidence 6889999999998888764 3667766 3 2443 7899999999886789999999999865 35677889
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEE-CCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL-NPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai-~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
+|+|++|+|..+. .+.++.+++.+....+.. +..+..+...++.+ .++-|..+++..|........+.++.
T Consensus 77 ~gad~~Tvh~~~g-----~~~i~~~~~~~~~~~~~~~s~~~~~~~~~~~~~---~~~~~a~~~~~~g~~~~~~~~~~~~~ 148 (206)
T d2czda1 77 AGADYVIVHTFVG-----RDSVMAVKELGEIIMVVEMSHPGALEFINPLTD---RFIEVANEIEPFGVIAPGTRPERIGY 148 (206)
T ss_dssp TTCSEEEEESTTC-----HHHHHHHHTTSEEEEECCCCSGGGGTTTGGGHH---HHHHHHHHHCCSEEECCCSSTHHHHH
T ss_pred ccccEEEeeeccc-----HHHHHHhhhcccceEEEeccCCcccccccHHHH---HHHHHHHhcccccccccccCchhhhh
Confidence 9999999998863 356777788776666532 22222221122211 11112222333332222222344555
Q ss_pred HHHHhhhcCCCCeEEEecCCC--hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG--PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~--~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+|+.+. .++.+. .+||+ ..+..+++++|||++|+||+|++++||.++++++++.+|
T Consensus 149 ~r~~~~---~~~~i~-~pGI~~~~~~~~~ai~~Gad~iVvGR~I~~a~dP~~aa~~i~~~ik 206 (206)
T d2czda1 149 IRDRLK---EGIKIL-APGIGAQGGKAKDAVKAGADYIIVGRAIYNAPNPREAAKAIYDEIR 206 (206)
T ss_dssp HHHHSC---TTCEEE-ECCCCSSTTHHHHHHHHTCSEEEECHHHHTSSSHHHHHHHHHHHHC
T ss_pred hhhhhc---ccceEE-CCCccccCCCHHHHHHhCCCEEEEChhhccCCCHHHHHHHHHHHhC
Confidence 666553 245664 45555 558999999999999999999999999999999999875
|
| >d1km4a_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.77 E-value=9.5e-20 Score=157.86 Aligned_cols=200 Identities=18% Similarity=0.217 Sum_probs=146.3
Q ss_pred eEEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHHH
Q 023494 61 SPSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPDF 134 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~~ 134 (281)
++-++|+|..++++.++.+.+.+ ++++++ ++.....+|++.++++++..+.++.+|++..|.+. +++.+
T Consensus 3 ~ki~lAlD~~~~~~a~~l~~~~~~~v~~iKi-----g~~l~~~~G~~~v~~l~~~~~~~i~~D~K~~DIg~t~~~~~~~~ 77 (212)
T d1km4a_ 3 NRLILAMDLMNRDDALRVTGEVREYIDTVKI-----GYPLVLSEGMDIIAEFRKRFGCRIIADFAVADIPETNEKICRAT 77 (212)
T ss_dssp GGEEEEECCSSHHHHHHHHHHHTTTCSEEEE-----EHHHHHHHCTHHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHH
T ss_pred CCeEEEecCCCHHHHHHHHHHhCCCCcEEEE-----CHHHHHhcCHHHHHHHHHhcccceehhhhhhccccHHHHhHhhh
Confidence 34689999999999998887654 555555 33223489999999998866688999999999864 45667
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH-HH-HHHhhccCCEEEEEeecCCCCCCccchhHHHH
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-SA-IECVLDVVDLVLIMSVNPGFGGQSFIESQVKK 212 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-e~-~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~k 212 (281)
+++|+|++|+|..+. .++++.+++.+++.|.++.+......+- +. ...+ ++.+.-|+++.|..|+-......+.
T Consensus 78 ~~~gad~~TVh~~~g-~~~i~~~~~~a~~~~~~~~~l~~~s~~~~~~~~~~~---~~~~~~~~~~~g~~g~v~~~~~~~~ 153 (212)
T d1km4a_ 78 FKAGADAIIVHGFPG-ADSVRACLNVAEEMGREVFLLTEMSHPGAEMFIQGA---ADEIARMGVDLGVKNYVGPSTRPER 153 (212)
T ss_dssp HHTTCSEEEEESTTC-HHHHHHHHHHHHHHTCEEEEECSCSSGGGGTTHHHH---HHHHHHHHHHHTCCEEECCTTCHHH
T ss_pred ccccccEEEEeccCC-hHHHHHHHHHHHhcCCccccchhhcchhhhhhhhhH---HHHHHHHHHHhCCccccccccCHHH
Confidence 899999999999974 7789999999999997776654333221 11 1111 2223334567777776655555667
Q ss_pred HHHHHHHhhhcCCCCeEEEecCCChh--cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 213 ISDLRRMCLEKGVNPWIEVDGGVGPK--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 213 I~~lr~l~~~~~~~~~I~VDGGI~~e--~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
++++|+..++ + .+.|.|||+++ +..+ ...|||++|+||+|++++||.++++++++.+
T Consensus 154 i~~ir~~~~~---~-~~~vtpGI~~~g~~~~d-~~~~ad~iIvGR~I~~a~dP~~aa~~i~~~i 212 (212)
T d1km4a_ 154 LSRLREIIGQ---D-SFLISPGVGAQGGDPGE-TLRFADAIIVGRSIYLADNPAAAAAGIIESI 212 (212)
T ss_dssp HHHHHHHHCS---S-SEEEECCBSTTSBCHHH-HTTTCSEEEECHHHHTSSSHHHHHHHHHHHC
T ss_pred HhhhhhccCC---c-eeEEcCccccCCCCHHH-HHhhCCEEEECchhccCCCHHHHHHHHHHhC
Confidence 7788887753 2 35589999976 4444 3368999999999999999999999998753
|
| >d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Maize (Zea mays) [TaxId: 4577]
Probab=99.71 E-value=8.5e-17 Score=143.61 Aligned_cols=209 Identities=17% Similarity=0.284 Sum_probs=161.6
Q ss_pred CceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcCCCCC
Q 023494 57 DIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPVTDLP 117 (281)
Q Consensus 57 ~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~t~~~ 117 (281)
+..+.|-+.+.|+. ...+.++.+.++|+|.|++. +.||..+.. +.--.+.++++|+..+.|
T Consensus 16 ~~~li~y~~aG~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p 95 (261)
T d1rd5a_ 16 KTAFIPYITAGDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCP 95 (261)
T ss_dssp CCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSC
T ss_pred CCeEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCc
Confidence 45789999999885 55688888899999999998 667744332 122345677778766677
Q ss_pred eeEEEEe-cChh--hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc-CCEEEE
Q 023494 118 LDVHLMI-VEPE--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV-VDLVLI 193 (281)
Q Consensus 118 idaHLmv-~dp~--~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~-vD~Ilv 193 (281)
+.+ |. .||. ++++.|.++|+|++.++.. +.++..++.+.++++|+.....+.|.|+.++++.+... -.+|.+
T Consensus 96 ~il--m~Y~n~~~~~~~~~~~~~GvdG~IipDl--p~eE~~~~~~~~~~~gl~~I~lvaPtt~~~Ri~~i~~~a~gFvY~ 171 (261)
T d1rd5a_ 96 VVL--LSYYKPIMFRSLAKMKEAGVHGLIVPDL--PYVAAHSLWSEAKNNNLELVLLTTPAIPEDRMKEITKASEGFVYL 171 (261)
T ss_dssp EEE--ECCSHHHHSCCTHHHHHTTCCEEECTTC--BTTTHHHHHHHHHHTTCEECEEECTTSCHHHHHHHHHHCCSCEEE
T ss_pred eee--eeeecchhhHHHHHHHhcCceeeeecCc--cHHHHHHHHHHHhccccceEEEeccCCchhHHHHHHhcCcchhhh
Confidence 664 54 5665 3488999999999999876 46778899999999999999999999999999998886 467776
Q ss_pred EeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC----CCCHHHH
Q 023494 194 MSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----AKDYAEA 266 (281)
Q Consensus 194 msV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~----a~dp~~~ 266 (281)
+++. |.+|. .+.+...+.++++|+.. +.+|.|.+||+ +++++.+.+.|||++||||+|.+ +.++++.
T Consensus 172 vs~~-GvTG~~~~~~~~~~~~i~~ik~~t-----~~Pi~vGFGI~~~e~v~~~~~~gaDGvIVGSaiv~~i~~~~~~~~~ 245 (261)
T d1rd5a_ 172 VSVN-GVTGPRANVNPRVESLIQEVKKVT-----NKPVAVGFGISKPEHVKQIAQWGADGVIIGSAMVRQLGEAASPKQG 245 (261)
T ss_dssp ECSS-CCBCTTSCBCTHHHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHHHHHSSSSHHHH
T ss_pred hhcc-CcccccccchhHHHHHHHHhhhcc-----CCCeEEEcCCCCHHHHHHHHhcCCCEEEECHHHHHHHHHcCCHHHH
Confidence 6664 55553 35566677888888774 36999999997 89999999999999999999874 4566666
Q ss_pred HHHHHHhcC
Q 023494 267 IKGIKTSKR 275 (281)
Q Consensus 267 ~~~l~~~~~ 275 (281)
++.+.+.++
T Consensus 246 ~~~~~~~~~ 254 (261)
T d1rd5a_ 246 LRRLEEYAR 254 (261)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666655443
|
| >d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Salmonella typhimurium [TaxId: 90371]
Probab=99.70 E-value=7.3e-17 Score=144.48 Aligned_cols=210 Identities=13% Similarity=0.136 Sum_probs=157.6
Q ss_pred CCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----c--cC----CHHHHHHcCcC-CC
Q 023494 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----I--TI----GPLVVDALRPV-TD 115 (281)
Q Consensus 56 ~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----~--~~----G~~~I~~ir~~-t~ 115 (281)
++..+.|-+.+.|+. ...+.++.+.++|+|.|++. +.||..+.. + .+ -.+.++.+|+. .+
T Consensus 15 ~~~ali~y~t~G~P~~~~~~~~~~~l~~~GaDiiElGiPfSDP~aDGpvIq~a~~~al~~G~~~~~~~~~~~~~r~~~~~ 94 (267)
T d1qopa_ 15 REGAFVPFVTLGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPT 94 (267)
T ss_dssp TCCEEEEEEETTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSS
T ss_pred CCceEEEEEeCcCCCHHHHHHHHHHHHHcCCCEEEECCCCCcccccchHHHhhhhhcccccchhhhhhhhhhhhcccccc
Confidence 355689999999984 44577778889999999997 567733322 0 11 23567777765 45
Q ss_pred CCeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC
Q 023494 116 LPLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV 188 (281)
Q Consensus 116 ~~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v 188 (281)
.|+.. |. .|| ++|++.+.++|+|++.++.. +.++..++.+.++++|+.....+.|.|+.++++.+....
T Consensus 95 ~pivl--m~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDl--P~ee~~~~~~~~~~~~l~~I~lvaPtt~~~Ri~~i~~~a 170 (267)
T d1qopa_ 95 IPIGL--LMYANLVFNNGIDAFYARCEQVGVDSVLVADV--PVEESAPFRQAALRHNIAPIFICPPNADDDLLRQVASYG 170 (267)
T ss_dssp SCEEE--EECHHHHHTTCHHHHHHHHHHHTCCEEEETTC--CGGGCHHHHHHHHHTTCEEECEECTTCCHHHHHHHHHHC
T ss_pred cceEE--EeeccchhhcCchHHHHHHHhcCCCceeccch--hhhhhHHHHHhhhccCceEEEEecccccHHHHHHHHhhC
Confidence 77775 66 465 35688899999999999976 456677889999999999999999999999999998864
Q ss_pred -CEEEEEeecCCCCCCc--cchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC-----
Q 023494 189 -DLVLIMSVNPGFGGQS--FIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----- 259 (281)
Q Consensus 189 -D~IlvmsV~pG~~GQ~--f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~----- 259 (281)
.+|.++++ +|.+|.+ +..+..+.|+++|+.. +.++.|.+||+ +|++.+.+++|||++|+||+|.+
T Consensus 171 ~gFiY~vs~-~GvTG~~~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSAivk~i~~~ 244 (267)
T d1qopa_ 171 RGYTYLLSR-SGVTGAENRGALPLHHLIEKLKEYH-----AAPALQGFGISSPEQVSAAVRAGAAGAISGSAIVKIIEKN 244 (267)
T ss_dssp CSCEEEESS-SSCCCSSSCC--CCHHHHHHHHHTT-----CCCEEEESSCCSHHHHHHHHHTTCSEEEECHHHHHHHHHT
T ss_pred chhhhhhcc-cccCCcccccchhHHHHHHHHhhhc-----cCCceeecccCCHHHHHHHHhcCCCEEEECHHHHHHHHhc
Confidence 56666555 5877644 3455567788887764 47999999999 78999989999999999999985
Q ss_pred CCCHHHHHHHHHHhcC
Q 023494 260 AKDYAEAIKGIKTSKR 275 (281)
Q Consensus 260 a~dp~~~~~~l~~~~~ 275 (281)
.+++++.++++++.++
T Consensus 245 ~~~~~~~~~~i~~~v~ 260 (267)
T d1qopa_ 245 LASPKQMLAELRSFVS 260 (267)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHH
Confidence 2566666666665443
|
| >d1xi3a_ c.1.3.1 (A:) Thiamin phosphate synthase {Archaeon (Pyrococcus furiosus) [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Archaeon (Pyrococcus furiosus) [TaxId: 2261]
Probab=99.69 E-value=4.5e-17 Score=140.17 Aligned_cols=185 Identities=18% Similarity=0.140 Sum_probs=130.3
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
..+.+.++.+.++|++++|+...+...-. -.+..+.+++.+ ....+-+.++| +++.+.+.|+|+||++.+..
T Consensus 17 ~~~~~~v~~~l~~Gv~~vqlR~k~~~~~e----~~~~a~~l~~i~-~~~~~~liind---~~~lA~~~~adGvHl~~~~~ 88 (206)
T d1xi3a_ 17 KPEVESVREALEGGATAIQMRIKNAPTRE----MYEIGKTLRQLT-REYDALFFVDD---RVDVALAVDADGVQLGPEDM 88 (206)
T ss_dssp SCHHHHHHHHHHTTCSEEEECCCSCCHHH----HHHHHHHHHHHH-HHTTCEEEEES---CHHHHHHHTCSEEEECTTSC
T ss_pred cCHHHHHHHHHHcCCCEEEEcCCCCCHHH----HHHHHHHHHHHH-HHcCCeEEech---hHHHHHhccCceEeeccccc
Confidence 34567889989999999999866642111 123344444432 12235556777 77888899999999987742
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH-hhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~-~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.. .. ......++.+|...+ ..+.+.. ....+||+.+.++.|+.+.+...|..++.++++.+.. +++
T Consensus 89 ---~~-~~-~~~~~~~~iig~s~h---~~~e~~~a~~~g~DYi~~gpvf~T~tk~~~~~~g~~~l~~~~~~~-----~~P 155 (206)
T d1xi3a_ 89 ---PI-EV-AKEIAPNLIIGASVY---SLEEALEAEKKGADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV-----KIP 155 (206)
T ss_dssp ---CH-HH-HHHHCTTSEEEEEES---SHHHHHHHHHHTCSEEEEECSSCC----CCCCCHHHHHHHHHHHC-----SSC
T ss_pred ---cH-hh-hhhcccccccccccC---CHHHHHHHHhcCCCEEEeccccccccccccccccHHHHHHHHHhc-----CCC
Confidence 22 11 222223444555443 3444433 3346999999999988765555677888888887764 478
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.+.||||.+|+.++.++|+|.+.++|+||+++||+++++++++.++
T Consensus 156 v~AiGGI~~~ni~~~~~~Ga~gvAvis~I~~~~dp~~~~~~l~~~~~ 202 (206)
T d1xi3a_ 156 VVAIGGINKDNAREVLKTGVDGIAVISAVMGAEDVRKATEELRKIVE 202 (206)
T ss_dssp EEEESSCCTTTHHHHHTTTCSEEEESHHHHTSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCHHHHHHHHHhCCCEEEEhHHHHCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
|
| >d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.68 E-value=8.7e-17 Score=142.50 Aligned_cols=190 Identities=18% Similarity=0.281 Sum_probs=145.7
Q ss_pred eEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcCCCCCee
Q 023494 59 IVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPVTDLPLD 119 (281)
Q Consensus 59 ~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~t~~~id 119 (281)
-+.|-+.+.|+. ...+.++.+. .|+|.|++. +.||..+.. +.--.+.++++|+.++.|+.
T Consensus 6 ali~y~taG~P~~~~s~~~l~~l~-~g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~piv 84 (248)
T d1geqa_ 6 SLIPYLTAGDPDKQSTLNFLLALD-EYAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIV 84 (248)
T ss_dssp EEEEEEETTSSCHHHHHHHHHHHG-GGBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEE
T ss_pred ceEEEEcCcCCCHHHHHHHHHHHH-cCCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEE
Confidence 588999999884 4556777775 589999997 567743322 12234567788887778877
Q ss_pred EEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC-EE
Q 023494 120 VHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD-LV 191 (281)
Q Consensus 120 aHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD-~I 191 (281)
. |. .|| ++|++.+.++|+|++.+..- +.++..++.+.++++|+.....+.|+|+.++++.+....+ +|
T Consensus 85 l--m~Y~N~i~~~G~~~f~~~~~~~Gv~GliipDL--P~eE~~~~~~~~~~~gl~~I~lvaPtt~~~ri~~i~~~s~gFi 160 (248)
T d1geqa_ 85 L--MTYYNPIYRAGVRNFLAEAKASGVDGILVVDL--PVFHAKEFTEIAREEGIKTVFLAAPNTPDERLKVIDDMTTGFV 160 (248)
T ss_dssp E--EECHHHHHHHCHHHHHHHHHHHTCCEEEETTC--CGGGHHHHHHHHHHHTCEEEEEECTTCCHHHHHHHHHHCSSEE
T ss_pred E--EeccccccccCHHHHhhhhcccCeeEEeccCC--cHHHHHHHHhhccccCcceEEEecccchhHHHHHHHhcCCCeE
Confidence 4 77 477 35788889999999999976 4677889999999999999999999999999999887654 55
Q ss_pred EEEeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 192 LIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 192 lvmsV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
.+.+ .+|.+|. .+..+..+.++++|+.. +.++.|.+||+ +|+++++++.|||++|+||+|.+
T Consensus 161 Y~vs-~~GvTG~~~~~~~~~~~~v~~vk~~t-----~~Pv~vGFGI~~~e~v~~~~~~~ADGvIVGSaiv~ 225 (248)
T d1geqa_ 161 YLVS-LYGTTGAREEIPKTAYDLLRRAKRIC-----RNKVAVGFGVSKREHVVSLLKEGANGVVVGSALVK 225 (248)
T ss_dssp EEEC-CC-------CCCHHHHHHHHHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred EEEe-cccccccchhhhhhHHHHHHHHhhhc-----ccceeeecccCCHHHHHHHHhcCCCEEEECHHHHH
Confidence 5444 4677663 35566677888888874 36899999996 88999999999999999999975
|
| >d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Trp synthase alpha-subunit species: Thermus thermophilus [TaxId: 274]
Probab=99.66 E-value=2.9e-16 Score=140.60 Aligned_cols=208 Identities=20% Similarity=0.240 Sum_probs=149.9
Q ss_pred CCceEeEEEeccCcc--CHHHHHHHHHHcCCCeEEEE------eeeCccccc-----------ccCCHHHHHHcCcCCCC
Q 023494 56 SDIIVSPSILSANFA--KLGEQVKAVELAGCDWIHVD------VMDGRFVPN-----------ITIGPLVVDALRPVTDL 116 (281)
Q Consensus 56 ~~~~i~pSila~D~~--~l~~~l~~l~~~G~d~iHiD------ImDG~fvpn-----------~~~G~~~I~~ir~~t~~ 116 (281)
++..+.|-+.+.|+. ...+.++.+.+ |+|.|++. +.||..+.. +.--.+.++++|+.++.
T Consensus 14 ~~~ali~yitaG~P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~ 92 (271)
T d1ujpa_ 14 GRAALIPYLTAGFPSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEK 92 (271)
T ss_dssp TBCEEEEEEETTSSCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCS
T ss_pred CCceEEEEEeCcCCCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCC
Confidence 345699999999874 44456666654 89999998 678843332 11234567777776777
Q ss_pred CeeEEEEe-cCh------hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccC-
Q 023494 117 PLDVHLMI-VEP------EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVV- 188 (281)
Q Consensus 117 ~idaHLmv-~dp------~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~v- 188 (281)
|+.. |. .|| ++|++.+.++|+|++.++.. +.++..++.+.++++|+.....+.|.|+.++++.+....
T Consensus 93 pivl--m~Y~N~i~~~G~~~F~~~~~~aGvdGliipDL--P~ee~~~~~~~~~~~gl~~I~lvsPtT~~eRi~~i~~~s~ 168 (271)
T d1ujpa_ 93 PLFL--MTYLNPVLAWGPERFFGLFKQAGATGVILPDL--PPDEDPGLVRLAQEIGLETVFLLAPTSTDARIATVVRHAT 168 (271)
T ss_dssp CEEE--ECCHHHHHHHCHHHHHHHHHHHTCCEEECTTC--CGGGCHHHHHHHHHHTCEEECEECTTCCHHHHHHHHTTCC
T ss_pred cEEE--EeechhhhhCCchhHhHHHhhcCceeEeccch--hhhhHHHHHHHhhccccceeeccCCCcchHHHHHHHHhCc
Confidence 8776 55 466 35788889999999999977 456677889999999999999999999999999998875
Q ss_pred CEEEEEeecCCCCCC--ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC----CC
Q 023494 189 DLVLIMSVNPGFGGQ--SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG----AK 261 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ--~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~----a~ 261 (281)
.+|.++++. |.+|. .+..+..+.++++|+.. +.++.|..||+ ++++..+ .|||++||||+|.+ ..
T Consensus 169 GFIY~Vs~~-GvTG~~~~~~~~~~~~i~~ik~~t-----~~Pv~vGFGIs~~e~v~~~--~~ADGvIVGSAiV~~i~e~~ 240 (271)
T d1ujpa_ 169 GFVYAVSVT-GVTGMRERLPEEVKDLVRRIKART-----ALPVAVGFGVSGKATAAQA--AVADGVVVGSALVRALEEGR 240 (271)
T ss_dssp SCEEEECC-------------CCHHHHHHHHTTC-----CSCEEEESCCCSHHHHHHH--TTSSEEEECHHHHHHHHTTC
T ss_pred chhhhhccc-CccCccccchHHHHHHHHhhhccc-----cCCeEEeCCCCCHHHHHHh--CCCCEEEEcHHHHHHHHhCC
Confidence 566666664 66664 35555667777777542 47999999999 6788764 59999999999874 46
Q ss_pred CHHHHHHHHHHhcCc
Q 023494 262 DYAEAIKGIKTSKRP 276 (281)
Q Consensus 262 dp~~~~~~l~~~~~~ 276 (281)
+..+.++++++.+++
T Consensus 241 ~~~~~~~~i~~~l~~ 255 (271)
T d1ujpa_ 241 SLAPLLQEIRQGLQR 255 (271)
T ss_dssp CHHHHHHHHHHHHBC
T ss_pred CHHHHHHHHHHHHHH
Confidence 788888888887653
|
| >d1eixa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=1.9e-17 Score=144.88 Aligned_cols=200 Identities=17% Similarity=0.233 Sum_probs=135.0
Q ss_pred eEEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhh----HHHH
Q 023494 61 SPSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQ----RVPD 133 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~----~i~~ 133 (281)
+|-++|+|+.++++.++.+++.+ ++++.+ ++ |.+ .+|++.++.|++ .+.++.+|++..|... .++.
T Consensus 4 ~~iivALD~~~~~eal~i~~~l~~~i~~iKi-----G~-~l~~~~G~~~i~~l~~-~~~~if~D~K~~DI~nt~~~~~~~ 76 (231)
T d1eixa_ 4 SPVVVALDYHNRDDALAFVDKIDPRDCRLKV-----GK-EMFTLFGPQFVRELQQ-RGFDIFLDLKFHDIPNTAAHAVAA 76 (231)
T ss_dssp CCEEEEECCSSHHHHHHHHTTSCTTTCEEEE-----EH-HHHHHHHHHHHHHHHH-TTCCEEEEEEECSCHHHHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHhCCcceEEEE-----CH-HHHhhcCHHHHHHHHh-cCchhhHhhHhhcCcHHHHHHHHh
Confidence 46789999999999999888764 444444 33 444 789999999998 5788999999999764 5677
Q ss_pred HHHcCCCEEEEcccccccccHHHHHHHHHHcCCc----EEEEECCCCCHHHHHHhhcc--C-CEE---EEEeecCCCCCC
Q 023494 134 FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK----AGVVLNPATSLSAIECVLDV--V-DLV---LIMSVNPGFGGQ 203 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k----~Glai~p~t~ie~~~~~l~~--v-D~I---lvmsV~pG~~GQ 203 (281)
+.+.|+|++|+|.... .+.+.++.+..++.|.. +++....+...+.+...... . +++ ..+..+.|..|.
T Consensus 77 ~~~~~~~~~tvh~~~g-~~~l~~~~~~~~~~~~~~~~~~~v~~~ts~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 155 (231)
T d1eixa_ 77 AADLGVWMVNVHASGG-ARMMTAAREALVPFGKDAPLLIAVTVLTSMEASDLVDLGMTLSPADYAERLAALTQKCGLDGV 155 (231)
T ss_dssp HHHHTCSEEEEBGGGC-HHHHHHHHHTTGGGGGGCCEEEEECSCTTCCHHHHHTTTCCSCHHHHHHHHHHHHHHTTCSEE
T ss_pred hhcccceEEEEeccCc-HHHHHHHHHhhhhcCccceEEEEEeeccccccchhcccccccchhHHHHHHHHHHHHhccccc
Confidence 8889999999999873 56677777777766643 34444433444433332110 0 000 001112233322
Q ss_pred ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 204 SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 204 ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.-.+.- ++.+++.... + .+.+.+||+++ |..+++++|||++||||+|++++||.++++++++
T Consensus 156 ~~~~~~---~~~~~~~~~~---~-~~~~tPGI~~~~~~~~dq~r~~tp~~Ai~~GaD~iIVGR~It~a~dP~~aa~~i~~ 228 (231)
T d1eixa_ 156 VCSAQE---AVRFKQVFGQ---E-FKLVTPGIRPQGSEAGDQRRIMTPEQALSAGVDYMVIGRPVTQSVDPAQTLKAINA 228 (231)
T ss_dssp ECCGGG---HHHHHHHHCS---S-SEEEECCBCCTTCCCTTCCSCBCHHHHHHTTCSEEEECHHHHTSSSHHHHHHHHHH
T ss_pred cccchh---hhhhhhhcCC---c-cceecCCcccCCCCccCccccCCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHHH
Confidence 122232 3344444432 2 46689999875 4778899999999999999999999999999998
Q ss_pred hcC
Q 023494 273 SKR 275 (281)
Q Consensus 273 ~~~ 275 (281)
.++
T Consensus 229 ~ik 231 (231)
T d1eixa_ 229 SLQ 231 (231)
T ss_dssp HTC
T ss_pred HhC
Confidence 764
|
| >d1dbta_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Bacillus subtilis [TaxId: 1423]
Probab=99.54 E-value=2.2e-15 Score=132.17 Aligned_cols=196 Identities=19% Similarity=0.251 Sum_probs=128.0
Q ss_pred EeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhH----HHHHHH
Q 023494 64 ILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFIK 136 (281)
Q Consensus 64 ila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~----i~~~~~ 136 (281)
|+|+|+.++++.++.+++.+ ++|+.+ | .|.+ .+|++.+++||+. +.++..|++..|.... +..+.+
T Consensus 7 IvALD~~~~~~al~i~~~~~~~i~~iKv----G--~~l~~~~G~~~i~~l~~~-~~~IflD~K~~DIgnTv~~~~~~~~~ 79 (237)
T d1dbta_ 7 IIALDFASAEETLAFLAPFQQEPLFVKV----G--MELFYQEGPSIVKQLKER-NCELFLDLKLHDIPTTVNKAMKRLAS 79 (237)
T ss_dssp EEECCCSSHHHHHHHTGGGTTSCCEEEE----C--HHHHHHHTHHHHHHHHHT-TCEEEEEEEECSCHHHHHHHHHHHHT
T ss_pred EEEeccCCHHHHHHHHHHcCCcccEEEE----C--HHHHhhcCHHHHHHHHhc-chheehhhhhccCchHHHHHHHhhhc
Confidence 68999999999998887654 455554 4 3544 7999999999985 5788899999998643 444567
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCC-------cEEEEECCCCCHHHHHH-hhcc---CCEEEEE---eecCCCCC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGA-------KAGVVLNPATSLSAIEC-VLDV---VDLVLIM---SVNPGFGG 202 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~-------k~Glai~p~t~ie~~~~-~l~~---vD~Ilvm---sV~pG~~G 202 (281)
.|+|++|+|.-.. .+.+++.++.+++... -.+++.-.+..-+.... +... .+.|.-+ ..+-|..|
T Consensus 80 ~~~d~vtvh~~~G-~~~i~aa~~~~~~~~~~~~~~~~l~~v~~lts~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~g 158 (237)
T d1dbta_ 80 LGVDLVNVHAAGG-KKMMQAALEGLEEGTPAGKKRPSLIAVTQLTSTSEQIMKDELLIEKSLIDTVVHYSKQAEESGLDG 158 (237)
T ss_dssp TTCSEEEEEGGGC-HHHHHHHHHHHHHHSCTTSCCCEEEEECSCTTCCHHHHHHTSCBCSCHHHHHHHHHHHHHHTTCSE
T ss_pred cccceEEeecccc-hHHHHHHHHhhhhcchhccccceeEEEecccccchHHHHhhhhhhcccchhhHHHHHhhhhcCcce
Confidence 8999999998863 5567777777776421 22333333333332221 1111 0111111 11223333
Q ss_pred CccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChh-----------cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 203 QSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPK-----------NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e-----------~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
--..|.-+ +.+|+.. +.++ +.+.+||+++ |..+++++|||++||||+|++++||.+++++++
T Consensus 159 ~v~s~~~~---~~~r~~~---~~~~-~ivtPGI~~~~~~~~dq~r~~tp~~a~~~GaD~iIVGR~I~~s~dP~~aa~~i~ 231 (237)
T d1dbta_ 159 VVCSVHEA---KAIYQAV---SPSF-LTVTPGIRMSEDAANDQVRVATPAIAREKGSSAIVVGRSITKAEDPVKAYKAVR 231 (237)
T ss_dssp EECCGGGH---HHHTTTS---CTTC-EEEECCBCCTTSCCTTCSSCBCHHHHHHTTCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred eecchhhh---hhhcccc---ccce-eEeccccccCCCCCCCceeeCCHHHHHHcCCCEEEECCcccCCCCHHHHHHHHH
Confidence 22223333 3333322 2234 5589999875 478899999999999999999999999999999
Q ss_pred Hhc
Q 023494 272 TSK 274 (281)
Q Consensus 272 ~~~ 274 (281)
+.+
T Consensus 232 ~~i 234 (237)
T d1dbta_ 232 LEW 234 (237)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
|
| >d2tpsa_ c.1.3.1 (A:) Thiamin phosphate synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Thiamin phosphate synthase family: Thiamin phosphate synthase domain: Thiamin phosphate synthase species: Bacillus subtilis [TaxId: 1423]
Probab=99.52 E-value=3e-14 Score=124.16 Aligned_cols=188 Identities=19% Similarity=0.154 Sum_probs=126.2
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.++|++++|+...+..... ...-.+..+.+++.+ ....+.|.++| .++.+.+.|+|+||+.....
T Consensus 31 ~~~~~v~~al~~Gv~~iqlR~K~~~~~~-~~~~~~~a~~l~~lc-~~~~~~liInd---~~~lA~~~~adGvHl~~~d~- 104 (226)
T d2tpsa_ 31 DPVTVVQKALKGGATLYQFREKGGDALT-GEARIKFAEKAQAAC-REAGVPFIVND---DVELALNLKADGIHIGQEDA- 104 (226)
T ss_dssp CHHHHHHHHHHHTCSEEEECCCSTTCCC-HHHHHHHHHHHHHHH-HHHTCCEEEES---CHHHHHHHTCSEEEECTTSS-
T ss_pred CHHHHHHHHHHCCCCEEEEcCCCccchh-HHHHHHHHHHHHHHH-HHhCCeEEEcC---CHHHHhhccCCEEEeccccc-
Confidence 4457788888999999999877652211 011112234444432 12244567777 77888899999999998742
Q ss_pred cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH-hhccCCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCe
Q 023494 151 TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC-VLDVVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPW 228 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~-~l~~vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~ 228 (281)
.+... +.... ...+|...+ + .+.+.. .-..+|||.+.++.|........ +...+.++.+++ .+.+++
T Consensus 105 --~~~~~-r~~~~-~~iig~S~h--~-~~e~~~a~~~g~DYi~~gpvf~T~sK~~~~~~~~~~~~~~~~~----~~~~~P 173 (226)
T d2tpsa_ 105 --NAKEV-RAAIG-DMILGVSAH--T-MSEVKQAEEDGADYVGLGPIYPTETKKDTRAVQGVSLIEAVRR----QGISIP 173 (226)
T ss_dssp --CHHHH-HHHHT-TSEEEEEEC--S-HHHHHHHHHHTCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHH----TTCCCC
T ss_pred --hhhhh-hhccc-ceeeeeecc--c-hHHHHHHHhCcCCeEEEecccccccccccccccccchhHHHHH----hcCCCC
Confidence 23333 22222 345566654 3 444433 34469999999988765433222 233444444433 234578
Q ss_pred EEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 229 IEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 229 I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.+-||||++|+.++.++|+|.+.+.|+||+++||.+++++|++.++
T Consensus 174 v~AiGGI~~~ni~~l~~~Ga~giAvis~I~~a~dp~~~~~~~~~~~~ 220 (226)
T d2tpsa_ 174 IVGIGGITIDNAAPVIQAGADGVSMISAISQAEDPESAARKFREEIQ 220 (226)
T ss_dssp EEEESSCCTTTSHHHHHTTCSEEEESHHHHTSSCHHHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHhCCCEEEEhHHhhcCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998764
|
| >d1vqta1 c.1.2.3 (A:1-198) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Thermotoga maritima [TaxId: 2336]
Probab=99.25 E-value=8.4e-11 Score=100.25 Aligned_cols=176 Identities=20% Similarity=0.198 Sum_probs=108.6
Q ss_pred eEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhH----HHHHHH
Q 023494 61 SPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQR----VPDFIK 136 (281)
Q Consensus 61 ~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~----i~~~~~ 136 (281)
.| |+|+|+.+..+.++.+ ..++|+.| | + |.+..|++.+++|++. ++++..||+..|.... ++.+.+
T Consensus 2 ~~-ilaLD~~~~~~~~~~~--~~~~~vKv----G-~-~l~~~G~~~i~~l~~~-~~~IflDlK~~DIpnTv~~~v~~~~~ 71 (198)
T d1vqta1 2 TP-VLSLDMEDPIRFIDEN--GSFEVVKV----G-H-NLAIHGKKIFDELAKR-NLKIILDLKFCDIPSTVERSIKSWDH 71 (198)
T ss_dssp EE-EEECCSSSHHHHHHHH--CCCSEEEE----C-H-HHHTTCTHHHHHHHTT-TCEEEEEEEECSCHHHHHHHHHHHCC
T ss_pred Cc-EEEcCchhHHHHHHHc--CCCCEEEE----C-H-HHHhccHHHHHHHHHC-CCcEEEEehhcCccHHHHHHHHHHhh
Confidence 45 8899998877766654 34777776 5 2 5566899999999875 7889999999997654 445567
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcE-EEEE--CCCCCHHHHHHhh----c-cCCEEEEEeecCCCCCCccchh
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKA-GVVL--NPATSLSAIECVL----D-VVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~-Glai--~p~t~ie~~~~~l----~-~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
.|+|++|+|.-.. .+.+.+..+ ..+.++ ++.. +.+...+.+.+.+ + .+|.|. .| +.
T Consensus 72 ~g~d~itvH~~~G-~~~l~~a~~---~~~~~~l~Vt~LtS~~~~~~~~~~~~~~l~~~g~~~vv--------~~----~~ 135 (198)
T d1vqta1 72 PAIIGFTVHSCAG-YESVERALS---ATDKHVFVVVKLTSMEGSLEDYMDRIEKLNKLGCDFVL--------PG----PW 135 (198)
T ss_dssp TTEEEEEEEGGGC-HHHHHHHHH---HCSSEEEEECCCTTSCCCHHHHHHHHHHHHHHTCEEEC--------CH----HH
T ss_pred ccccEEEEEccCc-hhhhhHhhh---hccccceeEEEeeccccchHHHHHHHHHHHHhccCccc--------cc----ch
Confidence 8999999998763 333333332 233332 3332 2222333322221 1 133221 11 11
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhcH---------HHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKNA---------YKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i---------~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
...+++.+ ...| +-.||+++.- ++.+++|||++|+||+|++++||.++++++++
T Consensus 136 ----~~~~~~~~-----~~~i-itPGIr~~~~~dDQkr~~t~~ai~~GAd~iVVGR~It~s~dp~~~~~~i~e 198 (198)
T d1vqta1 136 ----AKALREKI-----KGKI-LVPGIRMEVKADDQKDVVTLEEMKGIANFAVLGREIYLSENPREKIKRIKE 198 (198)
T ss_dssp ----HHHHTTTC-----CSCE-EECCBC---------CCBCHHHHTTTCSEEEESHHHHTSSCHHHHHHHHTC
T ss_pred ----hhhhhhhc-----cccc-cccccccCCCCCCcccccCHHHHHcCCCEEEECCcccCCCCHHHHHHHHhC
Confidence 11222221 1234 4589876632 24578999999999999999999999999874
|
| >d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Staphylococcus aureus [TaxId: 1280]
Probab=99.21 E-value=2.4e-10 Score=96.71 Aligned_cols=183 Identities=16% Similarity=0.181 Sum_probs=124.5
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEE---------EEecChhhHHHHHHHcCCCEE
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH---------LMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaH---------Lmv~dp~~~i~~~~~aGAd~I 142 (281)
..+..+...++|+..+++. +++.++.+|+..+.++..- .....-..+.+.+.++|+|.+
T Consensus 25 ~a~~A~aa~~~Ga~~i~~~------------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~agad~v 92 (222)
T d1y0ea_ 25 MSKMALAAYEGGAVGIRAN------------TKEDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIESQCEVI 92 (222)
T ss_dssp HHHHHHHHHHHTCSEEEEE------------SHHHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHHTCSEE
T ss_pred HHHHHHHHHHCCCeEEecC------------CHHHHHHHHHhcCCccceeeccCCcchHHhhcccHHHHHhHHHcCCCEE
Confidence 3455667778898887662 3456666766555554321 122222345667788999999
Q ss_pred EEccccc--ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCC--CCccchhHHHHHHHHHH
Q 023494 143 SVHCEQS--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG--GQSFIESQVKKISDLRR 218 (281)
Q Consensus 143 tvh~Ea~--~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~--GQ~f~~~~l~kI~~lr~ 218 (281)
.+..... ..+.+.+.++.+++.+...-+..+..|..+........+|+|.+....-+.. +....+..++.++++++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t~~~a~~~~~~g~d~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 172 (222)
T d1y0ea_ 93 ALDATLQQRPKETLDELVSYIRTHAPNVEIMADIATVEEAKNAARLGFDYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQ 172 (222)
T ss_dssp EEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSTTCCTTHHHHHHHHHHHH
T ss_pred EeeccccccccchHHHHHHHHHHhCCceEEeecCCCHHHHHHHHHcCCCeEEEeccCCcccccCccchhhHHHHHHHHHh
Confidence 9875421 2356889999999999888888887777776665555699886432211111 22223344566666655
Q ss_pred HhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 219 MCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 219 l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
.. ++++.++||| +.+++.++.++|||.+++||+|. +|.+..+++-+.+
T Consensus 173 ~~-----~iPVia~GGI~t~~d~~~~~~~GAdgV~iGsAi~---rp~~~~~~f~~~l 221 (222)
T d1y0ea_ 173 SV-----DAKVIAEGNVITPDMYKRVMDLGVHCSVVGGAIT---RPKEITKRFVQVM 221 (222)
T ss_dssp HC-----CSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHH---CHHHHHHHHHHTT
T ss_pred cC-----CCcEEEeCCCCCHHHHHHHHHcCCCEEEEchhhc---CHHHHHHHHHHHh
Confidence 43 5899999999 58999999999999999999997 4888888876654
|
| >d1w0ma_ c.1.1.1 (A:) Triosephosphate isomerase {Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermoproteus tenax [TaxId: 2271]
Probab=99.18 E-value=1.7e-10 Score=99.91 Aligned_cols=143 Identities=15% Similarity=0.125 Sum_probs=111.9
Q ss_pred HHHHHHcCCCEEEE-ccccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchh
Q 023494 131 VPDFIKAGADIVSV-HCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 131 i~~~~~aGAd~Itv-h~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
.+++.++|++++.+ |.|.- ...++.+.++.++++|+++.+-+. ++.+..+......|+|.+..+.+..+|+...+.
T Consensus 78 ~~~l~~~g~~~viigHsErR~~~~e~~~~~~~~~~~gl~~ivcvg--e~~~~~~~~~~~~~iIayep~waIGtg~~~~~~ 155 (226)
T d1w0ma_ 78 LENIKEAGGSGVILNHSEAPLKLNDLARLVAKAKSLGLDVVVCAP--DPRTSLAAAALGPHAVAVEPPELIGTGRAVSRY 155 (226)
T ss_dssp HHHHHHHTCCEEEECCTTSCCBHHHHHHHHHHHHHTTCEEEEEES--SHHHHHHHHHTCCSEEEECCGGGTTTSCCHHHH
T ss_pred HhhhcccccceEEeechhhhhhccchHHHHHHHHHcCCEEEEecC--chHHhhhhhccccceeeecchhhccCCCCCChh
Confidence 67889999999988 55531 234577888999999999888774 344444444445789988888776678887777
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCCChhc-HHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGVGPKN-AYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~-i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
..+++....+++.+.+.+.+|.++|||+.++ ...+.+.|+|.+.+||++++++||...+.+|.+.+.
T Consensus 156 ~~~~i~~~i~~~~~~~~~i~vlygGgV~~~n~~~~~~~~g~dGvLVGsA~l~a~d~~~~i~~l~~~~~ 223 (226)
T d1w0ma_ 156 KPEAIVETVGLVSRHFPEVSVITGAGIESGDDVAAALRLGTRGVLLASAAVKAKDPYAKIVELAKPLS 223 (226)
T ss_dssp CHHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEECHHHHTCSSHHHHHHHHHHHHH
T ss_pred hhhHhhhhhhhhhccCCCceEEEecCcCChHHHHHHhcCCCCEEEechheecCCCHHHHHHHHHHHHH
Confidence 7788777777776666678999999999765 567788999999999999999999998888877654
|
| >d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: NanE-like domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE species: Streptococcus pyogenes [TaxId: 1314]
Probab=99.08 E-value=2.7e-09 Score=90.81 Aligned_cols=188 Identities=14% Similarity=0.147 Sum_probs=117.0
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh---------hhHHHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP---------EQRVPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp---------~~~i~~~~~a 137 (281)
-|...+.+..+...++|+..+.+. +++.++.+|+.++.+...-.....| ......+..+
T Consensus 30 ~~~~~v~~~A~a~~~~Ga~~i~~~------------~~~~~~~ir~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (230)
T d1yxya1 30 ETGGIMPLMAKAAQEAGAVGIRAN------------SVRDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAAL 97 (230)
T ss_dssp TTCCSHHHHHHHHHHHTCSEEEEE------------SHHHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTT
T ss_pred CChHHHHHHHHHHHHCCCeEEEec------------ChhhHHHHHhhhhcchhhhhcccCCcceeeechhHHHHHHHHhc
Confidence 355667677788889999998662 3456777787776665433222221 1346677889
Q ss_pred CCCEEEEccccc---ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 138 GADIVSVHCEQS---STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 138 GAd~Itvh~Ea~---~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
|+|.+.++.... ....+.+.++.++......-+.-+..|.-+........+|+|.+.....+..+....+..+ .+.
T Consensus 98 gad~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~~~~~~~~~~~~-~~~ 176 (230)
T d1yxya1 98 NIAVIAMDCTKRDRHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYTPYSRQEAGPDV-ALI 176 (230)
T ss_dssp TCSEEEEECCSSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSSTTSCCSSSCCH-HHH
T ss_pred CCCEEEEecccccccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeecccccccccccchHHH-HHH
Confidence 999998875321 1345667788877765444444444444443333334589886532221111111112222 233
Q ss_pred HHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
+.+.. .++++.++||| |++++.++.++|||.+++||+|+ +|++.+++|.+.++
T Consensus 177 ~~~~~-----~~ipvia~GGI~t~~d~~~al~~GAd~V~vGsAi~---~p~~i~~~~~~~~~ 230 (230)
T d1yxya1 177 EALCK-----AGIAVIAEGKIHSPEEAKKINDLGVAGIVVGGAIT---RPKEIAERFIEALK 230 (230)
T ss_dssp HHHHH-----TTCCEEEESCCCSHHHHHHHHTTCCSEEEECHHHH---CHHHHHHHHHHHTC
T ss_pred HHHhc-----CCCeEEEeCCCCCHHHHHHHHHcCCCEEEEChhhc---CHHHHHHHHHHHhC
Confidence 33222 25789999999 59999999999999999999998 47777777776553
|
| >d1dqwa_ c.1.2.3 (A:) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.92 E-value=1.9e-08 Score=88.69 Aligned_cols=187 Identities=14% Similarity=0.128 Sum_probs=115.0
Q ss_pred EEEeccCccCHHHHHHHHHHcC--CCeEEEEeeeCcccccc-cCCHHH----HHHcCcCCCCCeeEEEEecChhhHHHHH
Q 023494 62 PSILSANFAKLGEQVKAVELAG--CDWIHVDVMDGRFVPNI-TIGPLV----VDALRPVTDLPLDVHLMIVEPEQRVPDF 134 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G--~d~iHiDImDG~fvpn~-~~G~~~----I~~ir~~t~~~idaHLmv~dp~~~i~~~ 134 (281)
.-++++|+.++++.++.+++.+ +.++-+ | + +.+ .+|++. +..+.+..++++.+|++..|...-+...
T Consensus 31 ~L~vALD~~~~~eal~li~~l~~~v~~~Ki----g-~-~lf~~~G~~~~~~~~~~~~~~~~~~IflDlK~~DIpnTv~~a 104 (267)
T d1dqwa_ 31 NLCASLDVRTTKELLELVEALGPKICLLKT----H-V-DILTDFSMEGTVKPLKALSAKYNFLLFEDRKFADIGNTVKLQ 104 (267)
T ss_dssp CEEEECCCSSHHHHHHHHHHHGGGCSEEEE----C-G-GGCSSCCTTTTHHHHHHHHHHHTCEEEEEEEECCCHHHHHHH
T ss_pred CEEEEeccCCHHHHHHHHHHhCCcceEEEE----C-H-HHHhhcChHHHHHHHHHHHhccCceEecCccccCCcHHHHHH
Confidence 3467889999999998887653 344433 3 2 333 566543 3333333588999999999998765432
Q ss_pred -------HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEE-EEECCCC------CH----HHHHHhhc-cCCEEEEEe
Q 023494 135 -------IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG-VVLNPAT------SL----SAIECVLD-VVDLVLIMS 195 (281)
Q Consensus 135 -------~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~G-lai~p~t------~i----e~~~~~l~-~vD~Ilvms 195 (281)
...|+|++|+|.-.. .+.+..+++.+++.+.+.. +.+.... .. +.+..+.. ..|.|....
T Consensus 105 ~~a~~~~~~~~~d~vTvh~~~G-~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~gvvg~~ 183 (267)
T d1dqwa_ 105 YSAGVYRIAEWADITNAHGVVG-PGIVSGLKQAAEEVTKEPRGLLMLAELSCKGSLSTGEYTKGTVDIAKSDKDFVIGFI 183 (267)
T ss_dssp HHSTTTCHHHHCSEEEEESTTC-THHHHHHHHHHHHHCSSCCEEEEECSCCSTTCCCCHHHHHHHHHHHTTCTTTEEEEE
T ss_pred HHHHHHHhhcCCcEEEecCcCC-HHHHHHHHHHhhccCCccccchhhhhhhhhhhhhhhhHHHHHHHHHHhCCCCceeee
Confidence 345799999998863 6678888888888776542 3221111 11 12222222 245444322
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-----------ChhcHHHHHHcCCcEEEEccccc-CCCCH
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-----------GPKNAYKVIEAGANALVAGSAVF-GAKDY 263 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-----------~~e~i~~~~~aGAD~~VvGSaIf-~a~dp 263 (281)
.+.......+ +.++ +.+..|| ...+..+.+++|+|.+||||+|+ .++||
T Consensus 184 ~~~~~~~~~~------------------~~~~-~ivtpgir~~~~~~~~g~q~~tp~eAi~~Gad~iVVGR~I~~aa~dp 244 (267)
T d1dqwa_ 184 AQRDMGGRDE------------------GYDW-LIMTPGVGLDDKGDALGQQYRTVDDVVSTGSDIIIVGRGLFAKGRDA 244 (267)
T ss_dssp CSSCCCCTTT------------------TCCC-EEEECSBCSSTTTCSTTTCCBCHHHHHHTTCCEEEECGGGTSTTCCH
T ss_pred hhHHHHHHhc------------------Cccc-eEeccccccCCCCCCCCcccCCHHHHHHCCCCEEEECChhcCCCCCH
Confidence 2211111110 1112 2344444 34478899999999999999998 47899
Q ss_pred HHHHHHHHHhc
Q 023494 264 AEAIKGIKTSK 274 (281)
Q Consensus 264 ~~~~~~l~~~~ 274 (281)
+++++++++..
T Consensus 245 ~~aak~~r~~~ 255 (267)
T d1dqwa_ 245 KVEGERYRKAG 255 (267)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999864
|
| >d1hg3a_ c.1.1.1 (A:) Triosephosphate isomerase {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Archaeon Pyrococcus woesei [TaxId: 2262]
Probab=98.81 E-value=4.2e-08 Score=84.13 Aligned_cols=139 Identities=19% Similarity=0.200 Sum_probs=95.3
Q ss_pred HHHHHHcCCCEEEE-ccccc-ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecC-CCCCCccc
Q 023494 131 VPDFIKAGADIVSV-HCEQS-STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP-GFGGQSFI 206 (281)
Q Consensus 131 i~~~~~aGAd~Itv-h~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~p-G~~GQ~f~ 206 (281)
.+++.+.|++++.+ |.|.. ...+..+.++.+++.|+++.+-+.. +.+ .+.+.. ..+.|.+..+.. |. |..-.
T Consensus 80 ~~~l~~~g~~~~iiGHSErr~~~~e~~~~i~~~~~~gl~~i~cv~~--~~~-~~~~~~~~~~iiAyEpvwaIGt-g~~~~ 155 (224)
T d1hg3a_ 80 PEAVKEAGAVGTLLNHSENRMILADLEAAIRRAEEVGLMTMVCSNN--PAV-SAAVAALNPDYVAVEPPELIGT-GIPVS 155 (224)
T ss_dssp HHHHHHTTCCEEEESCGGGCCBHHHHHHHHHHHHHHTCEEEEEESS--HHH-HHHHHTTCCSEEEECCTTTTTT-SCCTT
T ss_pred hhhccccCcceeeeccccccccccchhHHHHHHHHcCCceeechhh--HHH-HHhhhhcccceEEecchHhhcc-ccCCC
Confidence 56789999999987 45531 1234567888899999999887753 222 222222 346666654443 33 44333
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+...+.+.+..+.+.+.+.+++|..+|||+. +....+.+.|+|.+.|||++++++||.+.+++|.+.
T Consensus 156 ~~~~~~i~~~i~~i~~~~~~v~vlygGsV~~~n~~~~~~~~g~dGvLVGsAsl~a~d~~~~~~~l~~~ 223 (224)
T d1hg3a_ 156 KAKPEVITNTVELVKKVNPEVKVLCGAGISTGEDVKKAIELGTVGVLLASGVTKAKDPEKAIWDLVSG 223 (224)
T ss_dssp TSCTHHHHHHHHHHHHHCTTSEEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTCSSHHHHHHHHHHT
T ss_pred chhhhhhhhhhhhhhhhccccceEEeCCcCCHHHHHHHHhCCCCEEEEcceeecCcCHHHHHHHHHhc
Confidence 3334444444444444455789999999984 677788999999999999999999999999888654
|
| >d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Thermotoga maritima [TaxId: 2336]
Probab=98.80 E-value=3.5e-08 Score=83.88 Aligned_cols=183 Identities=15% Similarity=0.123 Sum_probs=123.0
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecChhhHHHHHHH
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.|.|-+-.-|..+.....+.+.++|++.+++= -+..-..+.++++++. ++..+-+- -|.|++ -++.+.+
T Consensus 10 ~iipvlr~~~~~~a~~~~~al~~~Gi~~iEit-------lr~p~a~~~i~~l~~~~~~~~~vGaG-TV~~~~-~~~~a~~ 80 (202)
T d1wa3a1 10 KIVAVLRANSVEEAKEKALAVFEGGVHLIEIT-------FTVPDADTVIKELSFLKEKGAIIGAG-TVTSVE-QCRKAVE 80 (202)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHTTCCEEEEE-------TTSTTHHHHHHHTHHHHHTTCEEEEE-SCCSHH-HHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHcCCCEEEEe-------cCCccHHHHHHHHHHhcCCCcEEEec-ccccHH-HHHHHHh
Confidence 36788887787777788889999999999982 1223456777777642 43333331 235554 5778999
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+||+++.-+.- + .++++.++++|+...--.. ||-|....+-...|++=+ .|+- . ...+.|+.+
T Consensus 81 aGa~fivsP~~-----~-~~v~~~~~~~~i~~iPGv~--TpsEi~~A~~~G~~~lK~---fPa~---~---~G~~~lk~l 143 (202)
T d1wa3a1 81 SGAEFIVSPHL-----D-EEISQFCKEKGVFYMPGVM--TPTELVKAMKLGHTILKL---FPGE---V---VGPQFVKAM 143 (202)
T ss_dssp HTCSEEECSSC-----C-HHHHHHHHHHTCEEECEEC--SHHHHHHHHHTTCCEEEE---TTHH---H---HHHHHHHHH
T ss_pred hcccEEeCCCC-----c-HHHHHHHHhcCCceeCCcC--cHHHHHHHHHCCCCEEEe---cchh---h---cCHHHHHHH
Confidence 99998853332 1 4788999999987655442 455555555455777744 4421 1 112345555
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
+..++ ++++...|||+.+|+.+++++|+..+.+||+|++. |+++..++.++
T Consensus 144 ~~p~p----~i~~iptGGI~~~n~~~~l~aga~avg~Gs~l~~~-~~~~i~~~a~~ 194 (202)
T d1wa3a1 144 KGPFP----NVKFVPTGGVNLDNVCEWFKAGVLAVGVGSALVKG-TPDEVREKAKA 194 (202)
T ss_dssp HTTCT----TCEEEEBSSCCTTTHHHHHHHTCSCEEECHHHHCS-CHHHHHHHHHH
T ss_pred hCccc----CCcEEeeCCCCHHHHHHHHHCCCeEEEEchhhcCC-CHHHHHHHHHH
Confidence 54443 47899999999999999999999999999999974 55544444443
|
| >d1vc4a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermus thermophilus [TaxId: 274]
Probab=98.76 E-value=8.8e-08 Score=83.95 Aligned_cols=188 Identities=16% Similarity=0.150 Sum_probs=132.1
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
.+..+..+..+++|+..|.| .-|..| |.=..+.++.+|+.++.|+...=.+-||.. +.....+|||.|.+.....
T Consensus 65 ~dp~~~A~~y~~~GA~aiSV-LTe~~~---F~Gs~~dl~~v~~~~~iPvLrKDFIid~~Q-I~ea~~~GADaVLLIaall 139 (254)
T d1vc4a_ 65 VDPVEAALAYARGGARAVSV-LTEPHR---FGGSLLDLKRVREAVDLPLLRKDFVVDPFM-LEEARAFGASAALLIVALL 139 (254)
T ss_dssp CCHHHHHHHHHHTTCSEEEE-ECCCSS---SCCCHHHHHHHHHHCCSCEEEESCCCSHHH-HHHHHHTTCSEEEEEHHHH
T ss_pred CCHHHHHHHHHhcCCceEEE-EcCccc---ccccHHHHHHHHHHcCCCcccCCccccHHH-HHHHHhccchHHHHHHHHH
Confidence 35667778899999999887 344322 344677788888888899888777778763 5567889999998886543
Q ss_pred ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 150 STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 150 ~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
.+...++++.+++.|+.+-+-++....++..... .++.|.+=..+.-.-. .......++ .+++++...+..+
T Consensus 140 -~~~l~~l~~~A~~lgl~~LVEvh~~~El~~a~~~--~a~iIGINnRdL~t~~--vd~~~~~~l---~~~i~~~~~~~i~ 211 (254)
T d1vc4a_ 140 -GELTGAYLEEARRLGLEALVEVHTERELEIALEA--GAEVLGINNRDLATLH--INLETAPRL---GRLARKRGFGGVL 211 (254)
T ss_dssp -GGGHHHHHHHHHHHTCEEEEEECSHHHHHHHHHH--TCSEEEEESBCTTTCC--BCTTHHHHH---HHHHHHTTCCSEE
T ss_pred -HHHHHHHHHHHHHhCCceEEEeccHHHHhhhhcC--CCCEEEEeccchhhhh--cchHHHHHh---hhcccccCCCCEE
Confidence 4567889999999999999999754444433322 4677755433332111 222333333 4444444445566
Q ss_pred EEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHH
Q 023494 230 EVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIK 271 (281)
Q Consensus 230 ~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~ 271 (281)
..-+||+ ++.+..+ ++|+|.|.+|+++.+++||.+.+++|.
T Consensus 212 IsESGI~~~~dv~~l-~~g~davLIGesLm~~~d~~~~l~~L~ 253 (254)
T d1vc4a_ 212 VAESGYSRKEELKAL-EGLFDAVLIGTSLMRAPDLEAALRELV 253 (254)
T ss_dssp EEESCCCSHHHHHTT-TTTCSEEEECHHHHTSSCHHHHHHHHH
T ss_pred EEccCCCCHHHHHHH-HcCCCEEEEChhhcCCCCHHHHHHHhc
Confidence 6799995 8888775 689999999999999999999888763
|
| >d1a53a_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=98.71 E-value=1.3e-07 Score=82.65 Aligned_cols=187 Identities=16% Similarity=0.147 Sum_probs=129.8
Q ss_pred EeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 60 VSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 60 i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
-|||-...+. +..+ +....+.|+.-+-| .-|-.| |.=+.+.++.+|+.++.|+...=.+-||. .+.....+||
T Consensus 54 ~SPS~g~i~~-d~~~-~a~~~~~gA~aiSV-LTd~~~---F~Gs~~dl~~v~~~~~~PiLrKDFIid~~-QI~ea~~~GA 126 (247)
T d1a53a_ 54 KSPSGLDVER-DPIE-YSKFMERYAVGLSI-LTEEKY---FNGSYETLRKIASSVSIPILMKDFIVKES-QIDDAYNLGA 126 (247)
T ss_dssp BCTTSCBCCC-CHHH-HHHHHTTTCSEEEE-ECCCTT---TCCCHHHHHHHHHHCCSCEEEESCCCSHH-HHHHHHHHTC
T ss_pred CCCCCCcccc-CHHH-HHHHHHhCCCeEEE-ecCccc---cccchHHHHHHHhccccceeecccccChH-HHHHHHHhhc
Confidence 3788555543 3433 33466788988755 334322 33467788888888889988766667765 3556788999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRM 219 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l 219 (281)
|.|.+.....+.+++.++++.+++.|+.+-+-++....+++... -.++.|.+=.. ......... ++-.++..+
T Consensus 127 DaiLLI~~~L~~~~l~~l~~~a~~lgl~~LvEvh~~~El~~a~~--~~a~iIGINnR--nL~t~~vd~---~~~~~L~~~ 199 (247)
T d1a53a_ 127 DTVLLIVKILTERELESLLEYARSYGMEPLIEINDENDLDIALR--IGARFIGINSR--DLETLEINK---ENQRKLISM 199 (247)
T ss_dssp SEEEEEGGGSCHHHHHHHHHHHHTTTCCCEEEECSHHHHHHHHH--TTCSEEEEESB--CTTTCCBCH---HHHHHHHHH
T ss_pred chhhhhhhhccHHHHHHHHHHHHHHhhhHHhhcCCHHHHHHHHh--CCCCeEeeecc--Chhhhhhhh---hHHHHHHhh
Confidence 99999988765567999999999999999999975433333322 24677754222 223322333 344455666
Q ss_pred hhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCH
Q 023494 220 CLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDY 263 (281)
Q Consensus 220 ~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp 263 (281)
+++ +..+..-+||+ ++.+..+.++|+|.|.+|+++.+++|+
T Consensus 200 ip~---~~~~IaESGI~t~~dv~~l~~~G~davLIGeaLmk~~d~ 241 (247)
T d1a53a_ 200 IPS---NVVKVAESGISERNEIEELRKLGVNAFLIGSSLMRNPEK 241 (247)
T ss_dssp SCT---TSEEEEESCCCCHHHHHHHHHTTCCEEEECHHHHHCTTH
T ss_pred CCC---CCeEEEecCCCCHHHHHHHHHCCCCEEEECHHHcCCCch
Confidence 654 35666799999 889999999999999999999998876
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=98.66 E-value=2.8e-07 Score=80.40 Aligned_cols=189 Identities=17% Similarity=0.149 Sum_probs=121.4
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSS 150 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~ 150 (281)
+..+.++.+.+.|+|++|+=-.|+..-. -......++.+.+.+..|+.+-=-+.+. +.++.++++||+.|.+....
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~~-~~~~~~~i~~i~~~~~~pi~~gGGIr~~-e~~~~ll~~G~~kVii~s~~-- 108 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPEG-RATFIDSVKRVAEAVSIPVLVGGGVRSL-EDATTLFRAGADKVSVNTAA-- 108 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTT-HHHHHHHHHHHHHHCSSCEEEESSCCSH-HHHHHHHHHTCSEEEESHHH--
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccccc-cccHHHHHHHHHhhcCCcceeecccchh-hhhhhHhhcCCcEEEecccc--
Confidence 3456677888899999998544543111 1122356777766666777665555554 36778899999999998764
Q ss_pred cccHHHHHHHHHHcCCc-EE--EEECCC-----------------CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhH
Q 023494 151 TIHLHRTLNQIKDLGAK-AG--VVLNPA-----------------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQ 209 (281)
Q Consensus 151 ~~~i~~~l~~ik~~G~k-~G--lai~p~-----------------t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~ 209 (281)
..++..+-+.++..|.+ +. +.+... ++.+.++.+.+. +.-++++.++---..+.+.-+.
T Consensus 109 ~~~~~~~~~~~~~~G~q~iv~slD~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dG~~~G~d~~~ 188 (252)
T d1h5ya_ 109 VRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREATGLDAVKWAKEVEELGAGEILLTSIDRDGTGLGYDVEL 188 (252)
T ss_dssp HHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEEEEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCCCHHH
T ss_pred cCCcchHHHHHHhcCCCcEEEEEEEEEcCCcEEEEEeCCeEcCCCCHHHHHHHHHhcCCCEEEEEeecccCccCCcCHHH
Confidence 34555566666777754 33 333211 233445555443 7889998886422333344444
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEccccc-CCCCHHHHHHHHH
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVF-GAKDYAEAIKGIK 271 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf-~a~dp~~~~~~l~ 271 (281)
+++ +++.. +.++.+.||++ .+.+.++.+.|++.+++||++. +.-++.+.-+.++
T Consensus 189 ~~~---i~~~~-----~~pii~~GGv~~~~di~~l~~~g~~gv~~gs~l~~~~~~~~~lk~~l~ 244 (252)
T d1h5ya_ 189 IRR---VADSV-----RIPVIASGGAGRVEHFYEAAAAGADAVLAASLFHFRVLSIAQVKRYLK 244 (252)
T ss_dssp HHH---HHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHH
T ss_pred HHH---HHHhc-----CCCEEEecCCCCHHHHHHHHHCCCCEEEEhhHHHcCCCCHHHHHHHHH
Confidence 444 44443 36888999999 7999999999999999999975 4445554444443
|
| >d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Hypothetical protein HI0047 species: Haemophilus influenzae [TaxId: 727]
Probab=98.61 E-value=1.1e-06 Score=74.95 Aligned_cols=185 Identities=16% Similarity=0.142 Sum_probs=130.2
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc-CCCCCeeEEEEecChhhHHHHHHH
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP-VTDLPLDVHLMIVEPEQRVPDFIK 136 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~-~t~~~idaHLmv~dp~~~i~~~~~ 136 (281)
.+|.|-+-.-|..+..+..+.|.++|++.+++= -+.....+.++.+++ +++..+-+-- |.|++ -++.+.+
T Consensus 14 ~~iipvlr~~~~~~~~~~~~al~~~Gi~~iEit-------l~~~~a~~~I~~l~~~~p~~~vGaGT-V~~~~-~~~~a~~ 84 (212)
T d1vhca_ 14 LKIVPVIALDNADDILPLADTLAKNGLSVAEIT-------FRSEAAADAIRLLRANRPDFLIAAGT-VLTAE-QVVLAKS 84 (212)
T ss_dssp HCEEEEECCSSGGGHHHHHHHHHHTTCCEEEEE-------TTSTTHHHHHHHHHHHCTTCEEEEES-CCSHH-HHHHHHH
T ss_pred CCEEEEEeCCCHHHHHHHHHHHHHCCCCEEEEe-------CCChhHHHHHHHHHhcCCCceEeeee-cccHH-HHHHHHh
Confidence 357888888898899999999999999999982 223345678888875 4655555432 24544 6778899
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC-CCCCccchhHHHHHHH
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG-FGGQSFIESQVKKISD 215 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG-~~GQ~f~~~~l~kI~~ 215 (281)
+||+++.-+.-. .++++.++++++-..--. .||-|....+-..+|+|=+ .|. .-| .++.|+.
T Consensus 85 aGa~FivSP~~~------~~v~~~a~~~~i~~iPGv--~TpsEi~~A~~~G~~~vK~---FPA~~~g------G~~~lka 147 (212)
T d1vhca_ 85 SGADFVVTPGLN------PKIVKLCQDLNFPITPGV--NNPMAIEIALEMGISAVKF---FPAEASG------GVKMIKA 147 (212)
T ss_dssp HTCSEEECSSCC------HHHHHHHHHTTCCEECEE--CSHHHHHHHHHTTCCEEEE---TTTTTTT------HHHHHHH
T ss_pred hCCcEEECCCCC------HHHHHHHHhcCCCccCCc--CCHHHHHHHHHCCCCEEEE---ccccccc------hHHHHHH
Confidence 999998766542 368899999987664433 2455656555556787754 563 111 2344555
Q ss_pred HHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC-----CCCHHHHHHHHHH
Q 023494 216 LRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-----AKDYAEAIKGIKT 272 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~-----a~dp~~~~~~l~~ 272 (281)
++.-++ +.++...|||+.+|+.+.+++|+-.++.||.++. +.|+.+..++.++
T Consensus 148 l~~p~p----~~~~~ptGGV~~~N~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~~ 205 (212)
T d1vhca_ 148 LLGPYA----QLQIMPTGGIGLHNIRDYLAIPNIVACGGSWFVEKKLIQSNNWDEIGRLVRE 205 (212)
T ss_dssp HHTTTT----TCEEEEBSSCCTTTHHHHHTSTTBCCEEECGGGCHHHHHTTCHHHHHHHHHH
T ss_pred Hhcccc----CCeEEecCCCCHHHHHHHHhCCCEEEEEChhhCCHHHHhcCCHHHHHHHHHH
Confidence 665554 4788899999999999999999999999999995 3466654444444
|
| >d1piia2 c.1.2.4 (A:1-254) Indole-3-glycerophosphate synthase, IPGS {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Escherichia coli [TaxId: 562]
Probab=98.59 E-value=5e-07 Score=78.98 Aligned_cols=193 Identities=14% Similarity=0.121 Sum_probs=133.1
Q ss_pred EeEE--EeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPS--ILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pS--ila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
=||| .+.-++ +..+ +....++|+..|-| .-|-.| |.=..+.++.+|+.++.|+..-=.+-||.+ +.....+
T Consensus 57 aSPSkG~i~~~~-~p~~-~a~~~~~gA~aiSV-LTe~~~---F~Gs~~~l~~v~~~~~~PiLrKDFIid~~Q-I~ear~~ 129 (254)
T d1piia2 57 ASPSKGVIRDDF-DPAR-IAAIYKHYASAISV-LTDEKY---FQGSFNFLPIVSQIAPQPILCKDFIIDPYQ-IYLARYY 129 (254)
T ss_dssp EETTTEESCSSC-CHHH-HHHHHTTTCSEEEE-ECCSTT---TCCCTTHHHHHHHHCCSCEEEESCCCSHHH-HHHHHHT
T ss_pred cccchhhhcccc-hhHH-HHHHHHhccCceEE-eccccc---CCCCHHHHHHHHhccccccchhcccCcHHH-HHHHHhh
Confidence 4787 454454 4444 45577889998765 444322 334567788888888888777656677653 5567889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLR 217 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr 217 (281)
|||.|.+-....+.+.+.++++.+++.|+.+-+-++....++.... -.++.|.+=..+- .. |.- .+++-.++.
T Consensus 130 GADavLLI~~~L~~~~l~~l~~~a~~lgl~~LVEvh~~~El~~a~~--~~a~iIGINnRnL--~t--f~v-d~~~t~~L~ 202 (254)
T d1piia2 130 QADACLLMLSVLDDDQYRQLAAVAHSLEMGVLTEVSNEEEQERAIA--LGAKVVGINNRDL--RD--LSI-DLNRTRELA 202 (254)
T ss_dssp TCSEEEEETTTCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHH--TTCSEEEEESEET--TT--TEE-CTHHHHHHH
T ss_pred ccchhhhhHhhhcccHHHHHHHHHHHHhhhHHHhhccHHHHHHHHh--hcccccCccccch--hh--hhh-hhHHHHHHH
Confidence 9999999988765557999999999999999888874333333322 2467775432222 11 211 133444556
Q ss_pred HHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHH
Q 023494 218 RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGI 270 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l 270 (281)
.++++ +..+..-+||+ ++++..+ ++|+|.|.+|+++.+++||.+.+++|
T Consensus 203 ~~ip~---~~~~VsESGI~~~~d~~~l-~~g~davLiGeslm~~~dp~~~l~~L 252 (254)
T d1piia2 203 PKLGH---NVTVISESGINTYAQVREL-SHFANGFLIGSALMAHDDLHAAVRRV 252 (254)
T ss_dssp HHHCT---TSEEEEESCCCCHHHHHHH-TTTCSEEEECHHHHTCSCHHHHHHHH
T ss_pred HhCCC---CCEEEEcCCCCCHHHHHHH-HcCCCEEEEChHHhCCCCHHHHHHHH
Confidence 66654 34566689996 7888876 78999999999999999999998876
|
| >d1i4na_ c.1.2.4 (A:) Indole-3-glycerophosphate synthase, IPGS {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: Indole-3-glycerophosphate synthase, IPGS species: Thermotoga maritima [TaxId: 2336]
Probab=98.58 E-value=9.1e-07 Score=77.15 Aligned_cols=195 Identities=17% Similarity=0.265 Sum_probs=134.6
Q ss_pred EeEEE--eccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc
Q 023494 60 VSPSI--LSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 60 i~pSi--la~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
-|||. ++-+ .+..+..+..+ .|+..|-| .-|-+| |.=..+.++.+|+.++.|+..-=.+-||.. +.....+
T Consensus 50 ~SPS~G~i~~~-~d~~~~a~~ye-~GA~aiSV-LTd~~~---F~Gs~~~l~~vr~~~~~PiLrKDFIid~~Q-I~ea~~~ 122 (251)
T d1i4na_ 50 ASPSAGDINAD-ASLEDFIRMYD-ELADAISI-LTEKHY---FKGDPAFVRAARNLTCRPILAKDFYIDTVQ-VKLASSV 122 (251)
T ss_dssp BCSSSCBSCTT-CCHHHHHHHHH-HHCSEEEE-ECCCSS---SCCCTHHHHHHHTTCCSCEEEECCCCSTHH-HHHHHHT
T ss_pred CCCCCCCCcCC-ccHHHHHHHHh-cCCcceEE-ecccCC---CCCCHHHHHHHhhcccCchhhhhhhhCHHH-HHHHHhh
Confidence 37874 3333 36666666664 57888765 334322 333567788888888889877666677653 5567889
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISD 215 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~ 215 (281)
|||.|.+-....+.+.+.++++.+++.|+.+-+-++ ..++++..+. .++.|.+=..+.. .-...+.. -.+
T Consensus 123 GADaiLLI~~~L~~~~l~~l~~~a~~lgle~LvEvh---~~~El~~al~~~~a~iiGINnRdL~--t~~vd~~~---~~~ 194 (251)
T d1i4na_ 123 GADAILIIARILTAEQIKEIYEAAEELGMDSLVEVH---SREDLEKVFSVIRPKIIGINTRDLD--TFEIKKNV---LWE 194 (251)
T ss_dssp TCSEEEEEGGGSCHHHHHHHHHHHHTTTCEEEEEEC---SHHHHHHHHTTCCCSEEEEECBCTT--TCCBCTTH---HHH
T ss_pred ccceEEeecccccHHHHHHHHHHHHHhCCeeecccC---CHHHHHHHhcccccceeeeeecchh--ccchhhhH---HHH
Confidence 999999998876556799999999999999999986 3444554443 3677755333321 11122233 334
Q ss_pred HHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 216 LRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 216 lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+..++++ +..+..-.||+ ++.+..+ ++|+|.|.+|+++.+++||.+.+++|+..
T Consensus 195 L~~~ip~---~~~~IaESGI~~~~d~~~l-~~G~davLIG~sLm~~~~p~~~l~~l~a~ 249 (251)
T d1i4na_ 195 LLPLVPD---DTVVVAESGIKDPRELKDL-RGKVNAVLVGTSIMKAENPRRFLEEMRAW 249 (251)
T ss_dssp HGGGSCT---TSEEEEESCCCCGGGHHHH-TTTCSEEEECHHHHHCSSHHHHHHHHHHH
T ss_pred HHhhCCC---CCEEEEcCCCCCHHHHHHH-HhCCCEEEEChHHhCCCCHHHHHHHHHhc
Confidence 4445543 35566788996 8889876 68999999999999999999999999875
|
| >d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Escherichia coli [TaxId: 562]
Probab=98.56 E-value=1.5e-06 Score=74.17 Aligned_cols=185 Identities=15% Similarity=0.131 Sum_probs=129.8
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.|.|-+-.-|..+..+-.+.|.++|++.+++= -+.....+.++.+++. ++..+-+- -|.|++ -++.+.++
T Consensus 16 ~iipvlr~~~~~~a~~~~~al~~~Gi~~iEit-------l~tp~a~~~I~~l~~~~p~~~vGaG-TV~~~~-~~~~a~~a 86 (213)
T d1wbha1 16 PVVPVIVVKKLEHAVPMAKALVAGGVRVLNVT-------LRTECAVDAIRAIAKEVPEAIVGAG-TVLNPQ-QLAEVTEA 86 (213)
T ss_dssp SEEEEECCSSGGGHHHHHHHHHHTTCCEEEEE-------SCSTTHHHHHHHHHHHCTTSEEEEE-SCCSHH-HHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEe-------CCChhHHHHHHHHHHHCCCCeeecc-ccccHH-HHHHHHHC
Confidence 37787777888889899999999999999982 2223457888888864 66555543 234544 56788999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC-CCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF-GGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~l 216 (281)
||+++.-+.-. .++++.++++|+-..--.. ||-|....+-..++.|=+ .|.- -| ..+.++.+
T Consensus 87 Ga~FivSP~~~------~~v~~~a~~~~i~~iPGv~--TpsEi~~A~~~G~~~vKl---FPA~~~G------g~~~lkal 149 (213)
T d1wbha1 87 GAQFAISPGLT------EPLLKAATEGTIPLIPGIS--TVSELMLGMDYGLKEFKF---FPAEANG------GVKALQAI 149 (213)
T ss_dssp TCSCEEESSCC------HHHHHHHHHSSSCEEEEES--SHHHHHHHHHTTCCEEEE---TTTTTTT------HHHHHHHH
T ss_pred CCcEEECCCCC------HHHHHHHHhcCCCccCCcC--CHHHHHHHHHCCCCEEEe---ccchhcC------hHHHHHHh
Confidence 99988766542 3678999999987655443 455555555455777644 5532 12 13445556
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC-----CCHHHHHHHHHHh
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA-----KDYAEAIKGIKTS 273 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a-----~dp~~~~~~l~~~ 273 (281)
+..++ +.++...|||+.+|+.+.+++|+..+++||.+|.. .|+++-.++.++.
T Consensus 150 ~~p~p----~~~~~ptGGV~~~n~~~yl~~g~v~~~~Gs~l~~~~~i~~~d~~~i~~~a~~~ 207 (213)
T d1wbha1 150 AGPFS----QVRFCPTGGISPANYRDYLALKSVLCIGGSWLVPADALEAGDYDRITKLAREA 207 (213)
T ss_dssp HTTCT----TCEEEEBSSCCTTTHHHHHTSTTBSCEEEGGGSCHHHHHHTCHHHHHHHHHHH
T ss_pred cCccc----CCceeeeCCCCHHHHHHHHhCCCEEEEEChhhCChhhhhcCCHHHHHHHHHHH
Confidence 65554 47888999999999999999999999999999964 4555444444443
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=98.55 E-value=4e-07 Score=79.27 Aligned_cols=189 Identities=18% Similarity=0.132 Sum_probs=122.3
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
..+.++.+.+.|+|++|+=-.|+..-. ..-..+.++.+.+.++.|+.+-==+.+. +.++.++++||+.|.+..++ .
T Consensus 32 P~~~a~~~~~~g~dei~ivDld~~~~~-~~~~~~~i~~i~~~~~~pi~vgGGIr~~-e~i~~~l~~Ga~kviigs~~--~ 107 (253)
T d1thfd_ 32 PVELGKFYSEIGIDELVFLDITASVEK-RKTMLELVEKVAEQIDIPFTVGGGIHDF-ETASELILRGADKVSINTAA--V 107 (253)
T ss_dssp HHHHHHHHHHTTCCEEEEEESSCSSSH-HHHHHHHHHHHHTTCCSCEEEESSCCSH-HHHHHHHHTTCSEEEESHHH--H
T ss_pred HHHHHHHHHHcCCCEEEEEeecccccC-cccHHHHHHHHHhccCccceeecccccc-hhhhhHHhcCCCEEEEChHH--h
Confidence 445677888889999998334543221 1123466777766666776654444442 35778899999999999875 3
Q ss_pred ccHHHHHHHHHHcCCc---EEEEEC-----------CC---C---CHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHH
Q 023494 152 IHLHRTLNQIKDLGAK---AGVVLN-----------PA---T---SLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k---~Glai~-----------p~---t---~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
.++..+-+.++++|.. +.+.+. .. + ..+.+..+.+. +.-++++.++---..+.+.-+.+
T Consensus 108 ~n~~~l~~~~~~~G~~~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdI~~dGt~~G~d~~ll 187 (253)
T d1thfd_ 108 ENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLTSIDRDGTKSGYDTEMI 187 (253)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEEETTTTTSCSCCCHHHH
T ss_pred hChHHHHHHHHHcCCeeEEEeeeecccCCceeeeeeecccccchhHHHHHHHHHhccCCEEEEEEecccCccCCcccccc
Confidence 4555666666777754 223221 11 1 12445454443 78899998865223344554444
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHHHHHHHHHH
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKT 272 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l~~ 272 (281)
+++ ++. .+.++.+.||++ .+++.++.++|++.+++|+++... -++.+..+.+++
T Consensus 188 ~~i---~~~-----~~~pvi~~GGv~s~~di~~l~~~g~~gvivgsal~~~~~~~~~~k~~l~~ 243 (253)
T d1thfd_ 188 RFV---RPL-----TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEYLKK 243 (253)
T ss_dssp HHH---GGG-----CCSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTCSCHHHHHHHHHH
T ss_pred ccc---ccc-----ccceEEEecCCCCHHHHHHHHHCCCCEEEEchHHHcCCCCHHHHHHHHHH
Confidence 443 322 246888999999 799999999999999999998754 467766666555
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=98.47 E-value=1e-06 Score=76.51 Aligned_cols=189 Identities=17% Similarity=0.125 Sum_probs=122.2
Q ss_pred HHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccc
Q 023494 72 LGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSST 151 (281)
Q Consensus 72 l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~ 151 (281)
..+.++.+.+.|+|++|+=-.|+..- ......+.++.+.+.+..|+.+.=-+.+.+ .++.++++||+.|.+..++ .
T Consensus 32 P~~~a~~~~~~g~dei~iiDl~~~~~-~~~~~~~~i~~i~~~~~~pi~vgGGIrs~e-~~~~ll~~Ga~kVii~s~~--~ 107 (251)
T d1ka9f_ 32 PVEAARAYDEAGADELVFLDISATHE-ERAILLDVVARVAERVFIPLTVGGGVRSLE-DARKLLLSGADKVSVNSAA--V 107 (251)
T ss_dssp HHHHHHHHHHHTCSCEEEEECCSSTT-CHHHHHHHHHHHHTTCCSCEEEESSCCSHH-HHHHHHHHTCSEEEECHHH--H
T ss_pred HHHHHHHHHHcCCCEEEEEecccccc-cchhHHHHHHHHHhccCcchheeccccCHH-HHHHHHHcCCCEEEECchh--h
Confidence 34556777888999999854555321 112344677888776777877766666654 6678899999999999774 3
Q ss_pred ccHHHHHHHHHHcCCcEEEE-E-------------CCC------CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHH
Q 023494 152 IHLHRTLNQIKDLGAKAGVV-L-------------NPA------TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQV 210 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Gla-i-------------~p~------t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l 210 (281)
.++.-+-+.++..|.+..++ + +.. ++.+.++.+.+. +.-++++.++---..+.+.-+.+
T Consensus 108 ~n~~~i~~~~~~~G~q~iv~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dG~~~G~d~~l~ 187 (251)
T d1ka9f_ 108 RRPELIRELADHFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLTSMDRDGTKEGYDLRLT 187 (251)
T ss_dssp HCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEEETTTTTTCSCCCHHHH
T ss_pred hCHHHHHHHHHhhcccccccccchhhcccceEEEeccceecCCccHHHHHHHHHhcCCCEEEEEeecccCccCCcchhHH
Confidence 44555555666777654332 1 111 122444444443 78899998865222333443444
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CCHHHHHHHHHH
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKT 272 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l~~ 272 (281)
+++.+.. +.++.+.||++ .+.+.++.+.|++.+++|++++.. -++.+..+.+++
T Consensus 188 ---~~i~~~~-----~~pii~~GGv~~~~dl~~l~~~g~~gviig~al~~g~~~~~~~k~~l~~ 243 (251)
T d1ka9f_ 188 ---RMVAEAV-----GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRYLAE 243 (251)
T ss_dssp ---HHHHHHC-----SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHHHHH
T ss_pred ---HHHHhhc-----ceeEEEecCCCCHHHHHHHHHCCCCEEEEhHHHHcCCCCHHHHHHHHHH
Confidence 4444443 35788999999 799999999999999999998754 455544444433
|
| >d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: CutC-like family: CutC-like domain: Copper homeostasis protein CutC species: Shigella flexneri [TaxId: 623]
Probab=98.44 E-value=1.4e-06 Score=75.89 Aligned_cols=165 Identities=16% Similarity=0.220 Sum_probs=104.7
Q ss_pred CHHHHHHHHHHcCCCeEEE--EeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEec-Chh-------------hHHHHH
Q 023494 71 KLGEQVKAVELAGCDWIHV--DVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV-EPE-------------QRVPDF 134 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHi--DImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~-dp~-------------~~i~~~ 134 (281)
++++ ...+.++|+|.|++ +...|+.+|. ...++.+++..++|+. .|+. +++ +-++.+
T Consensus 9 s~~~-a~~A~~~GAdRIELc~~l~~GGlTPS----~g~i~~~~~~~~iPv~--vMIRPR~GdF~Ys~~E~~~M~~di~~~ 81 (247)
T d1twda_ 9 SMEC-ALTAQQNGADRVELCAAPKEGGLTPS----LGVLKSVRQRVTIPVH--PIIRPRGGDFCYSDGEFAAILEDVRTV 81 (247)
T ss_dssp SHHH-HHHHHHTTCSEEEECBCGGGTCBCCC----HHHHHHHHHHCCSCEE--EBCCSSSSCSCCCHHHHHHHHHHHHHH
T ss_pred CHHH-HHHHHHcCCCEEEEcCCcccCCCCCC----HHHHHHHHHhcCCCeE--EEEecCCCCCCCCHHHHHHHHHHHHHH
Confidence 4544 45677789999999 5667888884 5567777776666654 4885 221 135567
Q ss_pred HHcCCCEEEEcccccc-ccc---HHHHHHHHHHcCCcEEE--EECC-CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccc
Q 023494 135 IKAGADIVSVHCEQSS-TIH---LHRTLNQIKDLGAKAGV--VLNP-ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~-~~~---i~~~l~~ik~~G~k~Gl--ai~p-~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~ 206 (281)
.++|+|+|.|..-... .-+ .+++++.++ |+.+-. ++.. ..+.+.++.+++ .+|.||- . +|.+-.
T Consensus 82 k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~--~l~vTFHRAfD~~~d~~~al~~Li~lG~~rILT--S----Gg~~~a 153 (247)
T d1twda_ 82 RELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG--PLAVTFHRAFDMCANPLYTLNNLAELGIARVLT--S----GQKSDA 153 (247)
T ss_dssp HHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT--TSEEEECGGGGGCSCHHHHHHHHHHHTCCEEEE--C----TTSSST
T ss_pred HHcCCCeEEEEEECCCCCccHHHHHHHHHHhc--ccCeeeehhhhhhCCHHHHHHHHHhcCCCeEec--c----CCCCch
Confidence 8999999999976421 122 334444432 444332 2221 235566666555 3788863 1 334444
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
.+.++.|+++.+. . .+..|.+.||||.+|++.+++.|++-+=.+
T Consensus 154 ~~G~~~L~~L~~~---a-~~~iIm~GgGI~~~Ni~~l~~~g~~e~H~s 197 (247)
T d1twda_ 154 LQGLSKIMELIAH---R-DAPIIMAGAGVRAENLHHFLDAGVLEVHSS 197 (247)
T ss_dssp TTTHHHHHHHHTS---S-SCCEEEEESSCCTTTHHHHHHHTCSEEEEC
T ss_pred hHHHHHHHHHHHh---c-CCcEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 5666777666542 2 234588999999999999999999987654
|
| >d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: KDPG aldolase species: Pseudomonas putida [TaxId: 303]
Probab=98.34 E-value=1e-05 Score=68.98 Aligned_cols=184 Identities=16% Similarity=0.094 Sum_probs=125.8
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHc
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKA 137 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~a 137 (281)
.+.|-+-..|..+..+..+.|.++|++.+++=. +..-..+.++.+|+. ++..+-+-- |.|++ -++.+.++
T Consensus 18 ~iipvl~~~~~~~a~~~~~al~~~Gi~~iEitl-------~~p~a~~~i~~l~~~~p~~~vGaGT-V~~~~-~~~~a~~a 88 (216)
T d1mxsa_ 18 RILPVITIAREEDILPLADALAAGGIRTLEVTL-------RSQHGLKAIQVLREQRPELCVGAGT-VLDRS-MFAAVEAA 88 (216)
T ss_dssp SEEEEECCSCGGGHHHHHHHHHHTTCCEEEEES-------SSTHHHHHHHHHHHHCTTSEEEEEC-CCSHH-HHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEeC-------CChhHHHHHHHHHHhCCCcceeeee-eecHH-HHHHHHhC
Confidence 488888888999999999999999999998821 222356778888764 665555532 34544 57889999
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCC-CCCCccchhHHHHHHHH
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPG-FGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG-~~GQ~f~~~~l~kI~~l 216 (281)
||+++.-+.- -.++++.++++|+-..--.. ||-|....+-..+|+|=+ .|. ..| ..+.++.+
T Consensus 89 Ga~FivsP~~------~~~v~~~a~~~~i~~iPGv~--TpsEi~~A~~~G~~~vKl---FPA~~~~------g~~~ikal 151 (216)
T d1mxsa_ 89 GAQFVVTPGI------TEDILEAGVDSEIPLLPGIS--TPSEIMMGYALGYRRFKL---FPAEISG------GVAAIKAF 151 (216)
T ss_dssp TCSSEECSSC------CHHHHHHHHHCSSCEECEEC--SHHHHHHHHTTTCCEEEE---TTHHHHT------HHHHHHHH
T ss_pred CCCEEECCCC------cHHHHHHHHhcCCCccCCcC--CHHHHHHHHHCCCCEEEe---ccccccc------cHHHHHHH
Confidence 9998876654 24678899999876644332 455555555444666533 331 100 13445555
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC-----CCHHHHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA-----KDYAEAIKGIKT 272 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a-----~dp~~~~~~l~~ 272 (281)
+..++ ++++...|||+.+|+.+..++|+-..+.||.+|.. .|+++-.++.++
T Consensus 152 ~~p~p----~~~fiptGGV~~~n~~~yl~~~~v~avggs~l~~~~~i~~~d~~~i~~~a~~ 208 (216)
T d1mxsa_ 152 GGPFG----DIRFCPTGGVNPANVRNYMALPNVMCVGTTWMLDSSWIKNGDWARIEACSAE 208 (216)
T ss_dssp HTTTT----TCEEEEBSSCCTTTHHHHHHSTTBCCEEECTTSCHHHHHTTCHHHHHHHHHH
T ss_pred hcccc----cCceeccCCCCHHHHHHHHhcCCeEEEEccccCCHHHhhcCCHHHHHHHHHH
Confidence 55544 47888999999999999999998888999999963 455444333333
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=98.29 E-value=2.2e-06 Score=73.74 Aligned_cols=183 Identities=15% Similarity=0.206 Sum_probs=115.4
Q ss_pred HHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccc
Q 023494 73 GEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 73 ~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
.+.++.+.+.|+|++|+=-.|+..-. .-....++.+.+.+..|+.+.==+.+. +.++.+++.|++.|.+.-.+ ..
T Consensus 34 ~~~a~~~~~~ga~~l~i~DLd~~~~~--~~~~~~i~~i~~~~~~pi~vGGGIrs~-~~~~~ll~~Ga~kVvi~s~~--~~ 108 (239)
T d1vzwa1 34 LEAALAWQRSGAEWLHLVDLDAAFGT--GDNRALIAEVAQAMDIKVELSGGIRDD-DTLAAALATGCTRVNLGTAA--LE 108 (239)
T ss_dssp HHHHHHHHHTTCSEEEEEEHHHHHTS--CCCHHHHHHHHHHCSSEEEEESSCCSH-HHHHHHHHTTCSEEEECHHH--HH
T ss_pred HHHHHHHHHcCCCEEEEEeecccccc--cchHHHHHHHHhhcCcceEeecccccc-hhhhhhhccccccchhhHHh--hh
Confidence 34466777889999999666653222 224578888876665665554444443 36778899999999999775 34
Q ss_pred cHHHHHHHHHHcCCcEEEEECC-----------C---CCHHHHHHhhc-cCCEEEEEeecC-CCCCCccchhHHHHHHHH
Q 023494 153 HLHRTLNQIKDLGAKAGVVLNP-----------A---TSLSAIECVLD-VVDLVLIMSVNP-GFGGQSFIESQVKKISDL 216 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Glai~p-----------~---t~ie~~~~~l~-~vD~IlvmsV~p-G~~GQ~f~~~~l~kI~~l 216 (281)
++.-.-+..+..|-++.+++.. . ...+.++.+.+ .+.-|+++.+.- |. .+.+.-+.+++ +
T Consensus 109 ~~~~~~~~~~~~g~~~vv~~d~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~eii~tdi~~dGt-~~G~d~~l~~~---i 184 (239)
T d1vzwa1 109 TPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTDIAKDGT-LQGPNLELLKN---V 184 (239)
T ss_dssp CHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCCBHHHHHHHHHHTTCCCEEEEEC--------CCCHHHHHH---H
T ss_pred ccccchhhhccCCceeeeeeccceeeecCccceeeccccchhhhhhhhccccEEEEEeecccce-ecCCcchhhhh---h
Confidence 5555556667778777665421 1 11233444333 266688888854 32 22343344443 3
Q ss_pred HHHhhhcCCCCeEEEecCCC-hhcHHHHHH---cCCcEEEEcccccCC-CCHHHHHHH
Q 023494 217 RRMCLEKGVNPWIEVDGGVG-PKNAYKVIE---AGANALVAGSAVFGA-KDYAEAIKG 269 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~-~e~i~~~~~---aGAD~~VvGSaIf~a-~dp~~~~~~ 269 (281)
++. .+.++.+.|||+ .+++.++.+ .|++.+++||+++.. =+++++.+.
T Consensus 185 ~~~-----~~~pvi~sGGv~s~~Di~~l~~l~~~g~~gvivg~al~~g~i~~~e~~~~ 237 (239)
T d1vzwa1 185 CAA-----TDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKALYAKAFTLEEALEA 237 (239)
T ss_dssp HHT-----CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEECHHHHTTSSCHHHHHHH
T ss_pred hhc-----cCceEEEECCCCCHHHHHHHHhhhhCCccEeeEhHHHHCCCCCHHHHHHh
Confidence 333 246888999999 778887765 499999999999754 477776654
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.17 E-value=3.2e-06 Score=69.53 Aligned_cols=94 Identities=18% Similarity=0.266 Sum_probs=65.0
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+.+.++.+|+.....-+.+... .++.+.+.+. .+|.|++- .|.|+.+.+ +.+++...+.++.+++.
T Consensus 66 i~~~i~~~k~~~~~~~I~VEv~-s~~q~~~a~~~~~diImLD---------N~sp~~~k~---~v~~~~~~~~~i~lEaS 132 (169)
T d1qpoa1 66 VVDALRAVRNAAPDLPCEVEVD-SLEQLDAVLPEKPELILLD---------NFAVWQTQT---AVQRRDSRAPTVMLESS 132 (169)
T ss_dssp HHHHHHHHHHHCTTSCEEEEES-SHHHHHHHGGGCCSEEEEE---------TCCHHHHHH---HHHHHHHHCTTCEEEEE
T ss_pred hhhhhhhhhhhcCCCceEEEec-cHHHhhhhhhcCCcEEEec---------CcChHhHHH---HHHHhhccCCeeEEEEe
Confidence 5677888887654333333333 5555566554 69999872 365655443 33334444556899999
Q ss_pred cCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 233 GGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 233 GGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
||||++|+.++.+.|+|++++|+-.+++
T Consensus 133 GgI~~~ni~~ya~~GvD~IS~galt~sa 160 (169)
T d1qpoa1 133 GGLSLQTAATYAETGVDYLAVGALTHSV 160 (169)
T ss_dssp SSCCTTTHHHHHHTTCSEEECGGGTSSB
T ss_pred CCCCHHHHHHHHHcCCCEEECCccccCC
Confidence 9999999999999999999999766653
|
| >d1izca_ c.1.12.5 (A:) Macrophomate synthase {Macrophoma commelinae [TaxId: 108330]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: Macrophomate synthase species: Macrophoma commelinae [TaxId: 108330]
Probab=98.14 E-value=5.8e-06 Score=73.78 Aligned_cols=194 Identities=12% Similarity=0.145 Sum_probs=124.5
Q ss_pred HHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC--CCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccccccc
Q 023494 76 VKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV--TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIH 153 (281)
Q Consensus 76 l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~--t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~ 153 (281)
.+.+-.+|.||+-||...|.|-.. -=...+..++.. .+.+..|-+=-.||. ++.++.++||++|.|+.-. +.++
T Consensus 55 ~e~~a~~g~D~v~iD~EHg~~~~~--~~~~~i~a~~~~~~~~~~~iVRvp~~~~~-~I~~~LD~Ga~GIivP~V~-s~ee 130 (299)
T d1izca_ 55 TKVLAATKPDFVWIDVEHGMFNRL--ELHDAIHAAQHHSEGRSLVIVRVPKHDEV-SLSTALDAGAAGIVIPHVE-TVEE 130 (299)
T ss_dssp HHHHHHTCCSEEEEETTTSCCCHH--HHHHHHHHHHHHTTTCSEEEEECCTTCHH-HHHHHHHHTCSEEEETTCC-CHHH
T ss_pred HHHHHcCCCCEEEEcCCCCCCCHH--HHHHHHHHHHHhCCCCCCeEEeCCCCChH-HHHHHHHhCcCeeeccccc-cHHH
Confidence 556777899999999888843221 112334445432 222333432223333 6888999999999998654 3567
Q ss_pred HHHHHHHHH-----HcC-----------------------------CcEEEEECCCCCHHHHHHhhc--cCCEEEEEe--
Q 023494 154 LHRTLNQIK-----DLG-----------------------------AKAGVVLNPATSLSAIECVLD--VVDLVLIMS-- 195 (281)
Q Consensus 154 i~~~l~~ik-----~~G-----------------------------~k~Glai~p~t~ie~~~~~l~--~vD~Ilvms-- 195 (281)
.+++++.+| ..| ..+.+-|....-++.+++++. .+|.|.+.+
T Consensus 131 a~~~v~~~rypP~G~Rg~~~~~~~~g~~~~~~~~~~~~y~~~~n~~~~vi~qIEt~~av~nldeI~av~GVD~ifiGp~D 210 (299)
T d1izca_ 131 VREFVKEMYYGPIGRRSFSPWTFSPGIADASLFPNDPYNVATSNNHVCIIPQIESVKGVENVDAIAAMPEIHGLMFGPGD 210 (299)
T ss_dssp HHHHHHHHSCTTTCCCCCCSTTCBTTTBCCCSSTTCTTCHHHHHHHCEEEEEECSHHHHHTHHHHHTCTTCCCEEECHHH
T ss_pred HHHHHHhhhhccCCCccccccccccccccccccccchhHHhhhcccceeeeecCCHHHHHHHHHHhccccccEEEEcchH
Confidence 777777764 011 124445654446677777754 589998854
Q ss_pred --ecCCCC-----CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC-CCCHHHHH
Q 023494 196 --VNPGFG-----GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG-AKDYAEAI 267 (281)
Q Consensus 196 --V~pG~~-----GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~-a~dp~~~~ 267 (281)
..-|.. ||...|+..+-|+++.+.++++| .++ ..+..+++.++.+++.|++.+++|+.+.- ..-.+..+
T Consensus 211 Ls~slG~~~~~~~g~~~~p~v~~ai~~i~~a~k~~G--k~~-g~~~~~~~~~~~~~~~G~~~i~~g~D~~~l~~~~~~~l 287 (299)
T d1izca_ 211 YMIDAGLDLNGALSGVPHPTFVEAMTKFSTAAQRNG--VPI-FGGALSVDMVPSLIEQGYRAIAVQFDVWGLSRLVHGSL 287 (299)
T ss_dssp HHHHTTCCTTCCTTSCCCHHHHHHHHHHHHHHHHTT--CCE-EEECSSGGGHHHHHHTTEEEEEEEEHHHHHHHHHHHHH
T ss_pred HHhhcCCCcccccccccHHHHHHHHHHHHHHHHHcC--CcE-EeccCCHHHHHHHHHcCCCEEEEhHHHHHHHHHHHHHH
Confidence 233432 67778898888888888887765 343 34566899999999999999999976431 22234566
Q ss_pred HHHHHhcCc
Q 023494 268 KGIKTSKRP 276 (281)
Q Consensus 268 ~~l~~~~~~ 276 (281)
+++|...++
T Consensus 288 ~~~R~~~~~ 296 (299)
T d1izca_ 288 AQARASAKQ 296 (299)
T ss_dssp HHHHHHHGG
T ss_pred HHHHHHHhh
Confidence 666665544
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.02 E-value=4.9e-06 Score=68.48 Aligned_cols=92 Identities=17% Similarity=0.248 Sum_probs=64.5
Q ss_pred HHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeE
Q 023494 154 LHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWI 229 (281)
Q Consensus 154 i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I 229 (281)
+.+.++.+|+. ..++.+.. . .++++.+.++ .+|.|++- .|.|+.+.++.+ .++..+.++.|
T Consensus 64 ~~~~~~~~~~~~~~~~~I~VEv--~-~~~e~~~a~~~g~d~i~LD---------n~~pe~~k~~~~---~lk~~~~~i~l 128 (170)
T d1o4ua1 64 AERAVQEVRKIIPFTTKIEVEV--E-NLEDALRAVEAGADIVMLD---------NLSPEEVKDISR---RIKDINPNVIV 128 (170)
T ss_dssp HHHHHHHHHTTSCTTSCEEEEE--S-SHHHHHHHHHTTCSEEEEE---------SCCHHHHHHHHH---HHHHHCTTSEE
T ss_pred HHHHHHHHHhhCCCCceEEEEe--C-cHHHHHHHHhcCccEEEEc---------CcChhhHhHHHH---HHHhhCCcEEE
Confidence 66778888764 34455554 3 3555666555 49988762 366666554433 33334456899
Q ss_pred EEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 230 EVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 230 ~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
++.||||++|+.++.+.|+|++++|+-..++
T Consensus 129 EaSGGI~~~ni~~~a~~GVD~Is~g~lt~~a 159 (170)
T d1o4ua1 129 EVSGGITEENVSLYDFETVDVISSSRLTLQE 159 (170)
T ss_dssp EEEECCCTTTGGGGCCTTCCEEEEGGGTSSC
T ss_pred EEECCCCHHHHHHHHHcCCCEEEcCccccCC
Confidence 9999999999999999999999999766654
|
| >d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: HpcH/HpaI aldolase domain: 2-dehydro-3-deoxy-galactarate aldolase species: Escherichia coli [TaxId: 562]
Probab=97.99 E-value=4.9e-05 Score=65.98 Aligned_cols=175 Identities=14% Similarity=0.115 Sum_probs=117.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh-hHHHHHHHcCCCEEEEcccccccc
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE-QRVPDFIKAGADIVSVHCEQSSTI 152 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~-~~i~~~~~aGAd~Itvh~Ea~~~~ 152 (281)
...+.+-.+|.||+.+|.--|.|-.. -=...++.++. .+....| -|-++. .++..+.++||+.|.++.-. +.+
T Consensus 28 ~~~ei~a~~G~Dfv~iD~EHg~~~~~--~~~~~i~a~~~-~g~~~~V--Rvp~~~~~~i~~~LD~Ga~GIivP~v~-s~e 101 (253)
T d1dxea_ 28 ISTEVLGLAGFDWLVLDGEHAPNDIS--TFIPQLMALKG-SASAPVV--RVPTNEPVIIKRLLDIGFYNFLIPFVE-TKE 101 (253)
T ss_dssp HHHHHHTTSCCSEEEEESSSSSCCHH--HHHHHHHHTTT-CSSEEEE--ECSSSCHHHHHHHHHTTCCEEEESCCC-SHH
T ss_pred HHHHHHHcCCCCEEEEecccCCCChh--HHHHHHHHHhc-cCCCcee--cCCCCCHHHHHHHHhcCccEEEecccC-CHH
Confidence 45667778999999999887754321 11233444443 3333333 443333 36889999999999998654 355
Q ss_pred cHHHHHHHHH----------------------------HcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEE----eecC
Q 023494 153 HLHRTLNQIK----------------------------DLGAKAGVVLNPATSLSAIECVLD--VVDLVLIM----SVNP 198 (281)
Q Consensus 153 ~i~~~l~~ik----------------------------~~G~k~Glai~p~t~ie~~~~~l~--~vD~Ilvm----sV~p 198 (281)
+.+++++.+| .....+.+-|....-++.+++++. .+|.|.+. +..-
T Consensus 102 ea~~~v~~~~ypP~G~Rg~~~~~~~~~~~~~~~~~~~~n~~~~vi~~IEt~~av~nleeI~av~giD~i~iGp~DLs~sl 181 (253)
T d1dxea_ 102 EAELAVASTRYPPEGIRGVSVSHRANMFGTVADYFAQSNKNITILVQIESQQGVDNVDAIAATEGVDGIFVGPSDLAAAL 181 (253)
T ss_dssp HHHHHHHTTSCTTTCCCCCCSSSGGGGGGTSTTHHHHHTTSCEEEEEECSHHHHHTHHHHHTSTTCCEEEECHHHHHHHT
T ss_pred HHHHHHHhheeCCCCCcCcCcceeccccccccccccccccceEEEeecccHHHHHHHHHHhccCCCceEEEecCcHHhhc
Confidence 6666665431 112335566655556677777754 58999884 4456
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
|+.||...|...+.++++.+.+.++|. +..+= .-+++.++..++.|++.++.|+..
T Consensus 182 G~~g~~~~p~v~~ai~~v~~~~~~~gk--~~g~~-~~~~~~~~~~~~~G~~~i~~g~D~ 237 (253)
T d1dxea_ 182 GHLGNASHPDVQKAIQHIFNRASAHGK--PSGIL-APVEADARRYLEWGATFVAVGSDL 237 (253)
T ss_dssp TCTTCTTSHHHHHHHHHHHHHHHHTTC--CEEEE-CCSHHHHHHHHHTTCCEEEEEEHH
T ss_pred cCCCCCCChhHHHHHHHHHHHHHHcCC--CeEEe-cCCHHHHHHHHHcCCCEEEehHHH
Confidence 888888889999999999998887653 33332 337899999999999999999653
|
| >d1viza_ c.1.4.1 (A:) PcrB protein homolog YerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: PcrB protein homolog YerE species: Bacillus subtilis [TaxId: 1423]
Probab=97.99 E-value=2.7e-07 Score=79.43 Aligned_cols=172 Identities=18% Similarity=0.195 Sum_probs=86.8
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH-HHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV-VDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~-I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
...+.++.+.++|+|.|++. |...++.|+-. +.++++..+.|+. ||...... ...|+|.+.+..-..
T Consensus 20 ~t~e~i~~l~e~GaDiIElG-----fSDpiadg~viq~~~~~~~~~~p~i--l~~~~~~~-----~~~~~~~~~~~~~~~ 87 (229)
T d1viza_ 20 LPDEQLEILCESGTDAVIIG-----GSDGVTEDNVLRMMSKVRRFLVPCV--LEVSAIEA-----IVPGFDLYFIPSVLN 87 (229)
T ss_dssp CCHHHHHHHHTSCCSEEEEC-----C----CHHHHHHHHHHHTTSSSCEE--EECSCGGG-----CCSCCSEEEEEEETT
T ss_pred CHHHHHHHHHHcCCCEEEEc-----CCCcccccHHHHHHHHhhcCCCCEE--EEecccce-----eecccchhhHHHHHc
Confidence 55688999999999999993 33334443321 2233444557765 36543321 234666666553211
Q ss_pred cccc-----H-HHHHHH----------------HHHcCCcEEEEECCC--CCHHHHHHhhc--c--CCEEEEEeecCCCC
Q 023494 150 STIH-----L-HRTLNQ----------------IKDLGAKAGVVLNPA--TSLSAIECVLD--V--VDLVLIMSVNPGFG 201 (281)
Q Consensus 150 ~~~~-----i-~~~l~~----------------ik~~G~k~Glai~p~--t~ie~~~~~l~--~--vD~IlvmsV~pG~~ 201 (281)
..+. . ...... +++.+.+.+..+.|. ++-++...+.. . ...+..+++ +
T Consensus 88 g~~~~~~~~~~~~~~~~i~~~l~~de~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----t 163 (229)
T d1viza_ 88 SKNADWIVGMHQKAMKEYGELMSMEEIVAEGYCIANPDCKAAALTEADADLNMDDIVAYARVSELLQLPIFYLEY----S 163 (229)
T ss_dssp BSSGGGTTHHHHHHHHHCHHHHHHSCEEEEEEEECCTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEEEEEC----T
T ss_pred ccCHHHHhhhHHhhhccccCCCCcccCHHHHHHHHhcccceeeeeccCCCCCHHHHHHHHhhccceeEEEEEEec----c
Confidence 1110 0 000000 122233333322222 23333332221 1 222333322 3
Q ss_pred CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHH
Q 023494 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIK 268 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~ 268 (281)
|.....+..+++ ++.. .+.++.|.|||+ +|+++++. .+||++|+||+|.+ ++++..+
T Consensus 164 g~~~~~~~~~~v---~~~~----~~~Pl~VGFGIst~e~a~~v~-~~ADgVVVGSAiv~--~ie~~~~ 221 (229)
T d1viza_ 164 GVLGDIEAVKKT---KAVL----ETSTLFYGGGIKDAETAKQYA-EHADVIVVGNAVYE--DFDRALK 221 (229)
T ss_dssp TSCCCHHHHHHH---HHTC----SSSEEEEESSCCSHHHHHHHH-TTCSEEEECTHHHH--CHHHHHT
T ss_pred CccccchhHHHH---Hhhc----cCcceEEEcccCCHHHHHHHH-cCCCEEEECHHHHh--hHHHHHH
Confidence 433344444444 3332 247899999995 99999976 69999999999975 4544443
|
| >d1znna1 c.1.2.6 (A:18-271) Pyridoxal biosynthesis lyase PdxS {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: PdxS-like domain: Pyridoxal biosynthesis lyase PdxS species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.97 E-value=2.3e-05 Score=67.16 Aligned_cols=194 Identities=16% Similarity=0.186 Sum_probs=122.4
Q ss_pred cCccCHHHHHHHHHHcCCCeEEE------Eee-eCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHH--HHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHV------DVM-DGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVP--DFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHi------DIm-DG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~--~~~~a 137 (281)
.|..+.++ -+.++++|+=.++. ||- +|. +- -.-.|..++++.+....|+.+-.-+-+ +.+ .+-..
T Consensus 6 mDv~~~eq-A~iAe~aGAvaVmaLervpadiR~~GG-va-Rm~dp~~i~ei~~~vsipvmak~righ---~~eaqiLe~~ 79 (254)
T d1znna1 6 MDVVNAEQ-AKIAEAAGAVAVMALERVPADIRAAGG-VA-RMADPTVIEEVMNAVSIPVMAKVRIGH---YVEARVLEAL 79 (254)
T ss_dssp EEESSHHH-HHHHHHHTCSEEEECC---------CC-CC-CCCCHHHHHHHHHHCSSCEEEEEETTC---HHHHHHHHHH
T ss_pred EeccCHHH-HHHhhccCceeEeeeccCCHHHHhcCC-cc-cCCCHHHHHHHHHhcccccccccCCCc---hHHHHhHHhh
Confidence 47778765 45778888755432 333 332 11 122689999998877788887554444 543 34456
Q ss_pred CCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH-
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL- 216 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l- 216 (281)
|.|++-=-. .-++...-..+.++..|+=+.-...+-.|.+..+.+.+.+|- .-|+.|....-+....++.+
T Consensus 80 ~vd~idese----VLTpad~~~hi~k~~fkvpfVcg~r~Lgealrri~EgAamIr----tkGeagtgnvveav~h~R~i~ 151 (254)
T d1znna1 80 GVDYIDESE----VLTPADEEFHIDKRQFTVPFVCGCRDLGEAARRIAEGASMLR----TKGEPGTGNIVEAVRHMRKVN 151 (254)
T ss_dssp TCSEEEEET----TSCCSCSSCCCCGGGCSSCEEEEESSHHHHHHHHHTTCSEEE----ECCCTTSCCCHHHHHHHHHHH
T ss_pred CCCcccHhH----hcccccHHHhhcccceeeeeeCCCCccchhHHHHHHHHHHHH----hCCccCCCcHHHHHHHHHHHH
Confidence 888874221 111222223345556666666665666677888877776653 34666655443333222222
Q ss_pred ------H----------------------HHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHH
Q 023494 217 ------R----------------------RMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 217 ------r----------------------~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~ 267 (281)
. +......+.+++-+||||. +..+..+.+.|+|.+-+||+||+++||.+.+
T Consensus 152 ~~i~~~~~m~~~el~~~ak~lg~p~~l~~~v~~~g~l~v~~~~~~Gi~tpadaa~~MelG~dgV~v~s~I~~s~dP~~~a 231 (254)
T d1znna1 152 AQIRKVVNMSEDELVAEAKQLGAPVEVLREIKRLGRLPVVNFAAGGVTTPADAALMMHLGADGVFVGSGIFKSENPEKYA 231 (254)
T ss_dssp HHHHHHHHSCGGGHHHHHHHHTCCHHHHHHHHHHTSCSSEEEEESSCCSHHHHHHHHHTTCSEEEECGGGGGSSCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHhhCCchHHHHHHHHhCCCCceEEecCCCCChhhHHHHHHcCCCEEEEcchhhcCCCHHHHH
Confidence 1 1111123567788999998 8899999999999999999999999999999
Q ss_pred HHHHHhc
Q 023494 268 KGIKTSK 274 (281)
Q Consensus 268 ~~l~~~~ 274 (281)
+.+....
T Consensus 232 ~A~~~Av 238 (254)
T d1znna1 232 RAIVEAT 238 (254)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988754
|
| >d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydropyrimidine dehydrogenase, domain 4 species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.91 E-value=2e-05 Score=69.91 Aligned_cols=187 Identities=18% Similarity=0.208 Sum_probs=110.2
Q ss_pred ceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc----------cCCH----HHHHHcCcCCCCCeeEEEE
Q 023494 58 IIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI----------TIGP----LVVDALRPVTDLPLDVHLM 123 (281)
Q Consensus 58 ~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~----------~~G~----~~I~~ir~~t~~~idaHLm 123 (281)
..+..+....+..++.+..+.+++.|+|.+++.+- .||. ..-+ +.++.+|+.++.|+.+-|-
T Consensus 104 ~~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~s----cPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~ 179 (312)
T d1gtea2 104 IVIASIMCSYNKNDWMELSRKAEASGADALELNLS----CPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT 179 (312)
T ss_dssp EEEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECC----CBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC
T ss_pred ccccccccccchhHHHHHHHHhccCCCCeEeeccC----CCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeeccc
Confidence 34445555556666777777888899999998632 2332 1112 3455666667788777543
Q ss_pred e--cChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCC
Q 023494 124 I--VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFG 201 (281)
Q Consensus 124 v--~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~ 201 (281)
. .+.....+.+.++|+|.++++--... ..++... ..+. +...... ....-|.+
T Consensus 180 ~~~~~~~~i~~~~~~~g~~gi~~~n~~~~----------------~~~~~~~-~~~~----~~~~~~~----~~~~gg~s 234 (312)
T d1gtea2 180 PNVTDIVSIARAAKEGGADGVTATNTVSG----------------LMGLKAD-GTPW----PAVGAGK----RTTYGGVS 234 (312)
T ss_dssp SCSSCHHHHHHHHHHHTCSEEEECCCEEE----------------CCCBCTT-SCBS----SCBTTTT----BBCCEEEE
T ss_pred ccchhHHHHHHHHHHhcccceEEEeeccc----------------ccccccc-cccc----ccccccc----cccccccc
Confidence 2 23333455566777777776532100 0000000 0000 0000000 01112445
Q ss_pred CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC-CC-HHHHHHHHHHhcCcC
Q 023494 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA-KD-YAEAIKGIKTSKRPQ 277 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a-~d-p~~~~~~l~~~~~~~ 277 (281)
|....|.+++-++++++..+ +++|...|||. .+++.+++.+|||.+=+||+++.. .+ .++..+.|++.+++.
T Consensus 235 G~~i~~~al~~v~~~~~~~~----~ipIi~~GGI~~~~d~~~~l~aGA~~Vqv~ta~~~~G~~~i~~i~~~L~~~m~~~ 309 (312)
T d1gtea2 235 GTAIRPIALRAVTTIARALP----GFPILATGGIDSAESGLQFLHSGASVLQVCSAVQNQDFTVIQDYCTGLKALLYLK 309 (312)
T ss_dssp SGGGHHHHHHHHHHHHHHST----TCCEEEESSCCSHHHHHHHHHTTCSEEEESHHHHTSCTTHHHHHHHHHHHHHHHT
T ss_pred CcCcchhhHHHHHHHHHHcC----CCcEEEEcCCCCHHHHHHHHHcCCCeeEECHhhhccChHHHHHHHHHHHHHHHHc
Confidence 66667888888888887754 37899999996 889999999999999999997643 44 345556666665543
|
| >d2ffca1 c.1.2.3 (A:20-351) Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) {Plasmodium vivax [TaxId: 5855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Orotidine 5'-monophosphate decarboxylase (OMP decarboxylase) species: Plasmodium vivax [TaxId: 5855]
Probab=97.89 E-value=3.6e-06 Score=76.18 Aligned_cols=168 Identities=14% Similarity=0.110 Sum_probs=93.8
Q ss_pred cCCHHH-------HHHcCcCCCCCeeEEEEecChhh----HHHHHHH-cCCCEEEEcccccccccHHHHHHHHHHc-CCc
Q 023494 101 TIGPLV-------VDALRPVTDLPLDVHLMIVEPEQ----RVPDFIK-AGADIVSVHCEQSSTIHLHRTLNQIKDL-GAK 167 (281)
Q Consensus 101 ~~G~~~-------I~~ir~~t~~~idaHLmv~dp~~----~i~~~~~-aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k 167 (281)
.+|++- ++.+|+ .++++.+|+|..|... |.+.+.+ .|+|.+|+|.-.. .+.+..++....+. +..
T Consensus 122 ~~G~~G~~~L~~ii~~l~~-~g~~VflD~K~~DIgnTv~~ya~a~~~~~~~DavTVhp~~G-~d~l~p~~~~~~~~~~kg 199 (332)
T d2ffca1 122 PYGSLGVDVLKNVFDYLHH-LNVPTILDIKMNDIGNTVKHYRKFIFDYLRSDSCTANIYMG-TQMLRDICLDEECKRYYS 199 (332)
T ss_dssp TTTHHHHHHHHHHHHHHHH-HTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-STTHHHHHBCTTSCCBCE
T ss_pred HhhHHHHHHHHHHHHHhcc-cccceeehhhhccHHHHHHHHHHHHHhccCCCEEEecccch-HHHHHHHHHHHHhccccc
Confidence 668764 344443 4789999999999874 5655655 6999999997653 45565555443333 333
Q ss_pred EEEEECCCCCH-HHHHHhhccCCE---------------EEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 168 AGVVLNPATSL-SAIECVLDVVDL---------------VLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 168 ~Glai~p~t~i-e~~~~~l~~vD~---------------IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+.+.....++- ..+......-.. ...+.-..|..|---.....+.++.+|+..++ ..| +
T Consensus 200 v~vL~~tSn~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~G~V~gat~p~e~~~iR~~~~~----~~i-L 274 (332)
T d2ffca1 200 TFVLVKTTNADSHIFQNRLSLDGKEAYVVIAEEVQKMAKQLHLEENGEFVGFVVGANCYDEIKKIRELFPD----CYI-L 274 (332)
T ss_dssp EEEEEECSSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTTTGGGTCCEEEEECTTCHHHHHHHHHHCTT----CCE-E
T ss_pred ceeecccCcchHHHHHhhcccccchhhHHHHHHHHHHHHHHHhhhcccccceeEeechhHHHHHHHHhCCC----CeE-E
Confidence 33333222221 222211100000 00000000110100001123456666766543 456 5
Q ss_pred ecCCChh--cHHHH------HHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 232 DGGVGPK--NAYKV------IEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 232 DGGI~~e--~i~~~------~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
-.||..+ +.+.+ .+.|+|++|+||.|+.++||.++++++++.++
T Consensus 275 ~PGIGaQggDq~rv~t~~~a~~~ga~~IvvGR~I~~A~dp~~aa~~i~~ei~ 326 (332)
T d2ffca1 275 APGVGAQKGDLRKMLCNGYSKNYEKVLINVGRAITKSGSPQQAAREYHQQIK 326 (332)
T ss_dssp ECCBSTTCBCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred eCCcCcCCCCHHHHhCHHhHhhcCceEEEeCccccCCCCHHHHHHHHHHHHH
Confidence 5888855 44443 35689999999999999999999999888765
|
| >d1qapa1 c.1.17.1 (A:130-296) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=97.82 E-value=2.8e-05 Score=63.57 Aligned_cols=89 Identities=16% Similarity=0.269 Sum_probs=59.9
Q ss_pred HHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 154 LHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 154 i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+.+.++.+++.....-+.+... .++.+.+.++ .+|.|++ ..|.|+.+ +++.+.+ +.++.+++.
T Consensus 66 ~~~~~~~~~~~~~~~~IeVEv~-~~~~~~~a~~~g~diImL---------DN~~pe~~---~~av~~i---~~~~~lEaS 129 (167)
T d1qapa1 66 VRQAVEKAFWLHPDVPVEVEVE-NLDELDDALKAGADIIML---------DNFNTDQM---REAVKRV---NGQARLEVS 129 (167)
T ss_dssp HHHHHHHHHHHSTTSCEEEEES-SHHHHHHHHHTTCSEEEE---------SSCCHHHH---HHHHHTT---CTTCCEEEC
T ss_pred hhhhhHHHhhcCCCceEEEecC-cHHHHHHHHhcCCcEEEe---------cCCCHHHH---HHHHHhc---CCceEEEEe
Confidence 5567777776654333333323 4555566555 5999876 33656544 3333333 345889999
Q ss_pred cCCChhcHHHHHHcCCcEEEEccccc
Q 023494 233 GGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 233 GGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
||||++|+.++.+.|+|++++|+-..
T Consensus 130 GgI~~~ni~~ya~~GVD~IS~galt~ 155 (167)
T d1qapa1 130 GNVTAETLREFAETGVDFISVGALTK 155 (167)
T ss_dssp CCSCHHHHHHHHHTTCSEEECSHHHH
T ss_pred CCCCHHHHHHHHHcCCCEEECCcccC
Confidence 99999999999999999999987544
|
| >d1piia1 c.1.2.4 (A:255-452) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Escherichia coli [TaxId: 562]
Probab=97.78 E-value=0.00012 Score=60.98 Aligned_cols=176 Identities=18% Similarity=0.146 Sum_probs=107.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCCCCCeeEEEEec-ChhhHHHHHHHcCCCEEEEcc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLPLDVHLMIV-EPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t~~~idaHLmv~-dp~~~i~~~~~aGAd~Itvh~ 146 (281)
.++ +.++.+.+.|+|++=+ .|.|.- ...++..++|.+..+.. -|-+.++ +|....+.+...+.|++-+|.
T Consensus 9 t~~-~d~~~~~~~gaD~iGf-----if~~~SpR~Vs~~~a~~i~~~~~~~-~V~Vfv~~~~~~i~~~~~~~~~d~iQlHG 81 (198)
T d1piia1 9 TRG-QDAKAAYDAGAIYGGL-----IFVATSPRCVNVEQAQEVMAAAPLQ-YVGVFRNHDIADVVDKAKVLSLAAVQLHG 81 (198)
T ss_dssp CSH-HHHHHHHHHTCSEEEE-----ECCTTCTTBCCHHHHHHHHHHCCCE-EEEEESSCCHHHHHHHHHHHTCSEEEECS
T ss_pred CcH-HHHHHHHhCCCCEEEE-----EccCCCCCCcCHHHHHHhhhhcccc-cceeeeccchhhHHHhhhcccccceeecC
Confidence 344 4577777889999744 233321 35677888876643333 3334554 444445566778999999998
Q ss_pred cccccccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhc
Q 023494 147 EQSSTIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEK 223 (281)
Q Consensus 147 Ea~~~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~ 223 (281)
.. ++ +.++.+++. ...+...++...... ......+|.+++= ..+|-.|+.|.-..+++.
T Consensus 82 ~e----~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~lld-~~~gGtG~~fdw~~~~~~---------- 143 (198)
T d1piia1 82 NE----EQ-LYIDTLREALPAHVAIWKALSVGETLP--AREFQHVDKYVLD-NGQGGSGQRFDWSLLNGQ---------- 143 (198)
T ss_dssp CC----CH-HHHHHHHHHSCTTSEEEEEEECSSSCC--CCCCTTCCEEEEE-SCSCCSSCCCCGGGGTTS----------
T ss_pred Cc----cH-HHHHHHhccccccccceeccchhhhhh--HHHhhhhcccccC-Ccccccceeeehhhhccc----------
Confidence 63 12 345556654 334555555443321 1223457776653 346777888876543211
Q ss_pred CCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC---CCHHHHHHHHHH
Q 023494 224 GVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA---KDYAEAIKGIKT 272 (281)
Q Consensus 224 ~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a---~dp~~~~~~l~~ 272 (281)
...++.+.||||++|+.++++.++..+=+-|.+=.+ .|+. .++++.+
T Consensus 144 -~~~~~~LAGGl~~~Nv~~a~~~~p~gvDvsSGvE~~pG~KD~~-ki~~f~~ 193 (198)
T d1piia1 144 -SLGNVLLAGGLGADNCVEAAQTGCAGLDFNSAVESQPGIKDAR-LLASVFQ 193 (198)
T ss_dssp -CCTTEEEESSCCTTTHHHHHTTCCSEEEECGGGEEETTEECHH-HHHHHHH
T ss_pred -ccceeEEecCCCHHHHHHHHhcCCCEEEeCCcccCCCCCcCHH-HHHHHHH
Confidence 113467999999999999999999999888887433 3664 3334433
|
| >d2f6ua1 c.1.4.1 (A:1001-1231) (S)-3-O-geranylgeranylglyceryl phosphate synthase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: (S)-3-O-geranylgeranylglyceryl phosphate synthase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=97.74 E-value=7.1e-07 Score=76.61 Aligned_cols=33 Identities=15% Similarity=0.443 Sum_probs=29.0
Q ss_pred CCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+.++.|.|||+ +|+++++.+ +||++|+||+|.+
T Consensus 187 ~~Pv~VGFGI~s~e~a~~~~~-~ADgvIVGSaive 220 (231)
T d2f6ua1 187 KARLFYGGGIDSREKAREMLR-YADTIIVGNVIYE 220 (231)
T ss_dssp SSEEEEESCCCSHHHHHHHHH-HSSEEEECHHHHH
T ss_pred CCCEEEEeCcCCHHHHHHHHh-cCCEEEEChHHhc
Confidence 47999999995 899999876 7999999999853
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=97.72 E-value=7.5e-05 Score=63.87 Aligned_cols=188 Identities=13% Similarity=0.086 Sum_probs=114.7
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCE
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADI 141 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~ 141 (281)
+..+..|+.++ .+.+.+.|+|++|+==+|+..-. -......++.+++.. .|+.+-==+.+. +.++.+++.||+.
T Consensus 25 ~~~y~~dP~~~---a~~~~~~g~~~l~ivDLda~~~~-~~~~~~~~~~~~~~~-~pl~~gGGI~s~-~~~~~~~~~Ga~k 98 (241)
T d1qo2a_ 25 TIFYEKDPVEL---VEKLIEEGFTLIHVVDLSNAIEN-SGENLPVLEKLSEFA-EHIQIGGGIRSL-DYAEKLRKLGYRR 98 (241)
T ss_dssp EEEESSCHHHH---HHHHHHTTCCCEEEEEHHHHHHC-CCTTHHHHHHGGGGG-GGEEEESSCCSH-HHHHHHHHTTCCE
T ss_pred ceEECCCHHHH---HHHHHHCCCCEEEEEeccccccc-CCcchhheehhcccc-cchhhhhhhhhh-hhhhhccccccce
Confidence 45566777664 45666789999998444442111 122345666666643 465543333332 3678889999999
Q ss_pred EEEcccccccccHHHHHHHHHHcCCcEEEEEC--------------CCCC-HHHHHHhhcc-CCEEEEEeecCCCCCCcc
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--------------PATS-LSAIECVLDV-VDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~--------------p~t~-ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f 205 (281)
|.+..... +++ ..++.+.+.+.+..+.+. .... .+.++.+.+. +.-++++.++---..+-+
T Consensus 99 Vvi~s~~~--~~~-~~~~~~~~~~~~~~v~iD~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~eii~~dId~dGt~~G~ 175 (241)
T d1qo2a_ 99 QIVSSKVL--EDP-SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKDGTLQEH 175 (241)
T ss_dssp EEECHHHH--HCT-THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHHHHTCCC
T ss_pred EecCcccc--cCc-hhhhhhcccccceeeecccccccccccCcccceeeehhHHHHHhhccccceEEEeehhhhhhcccc
Confidence 99987542 222 345556666666655542 1112 2444444443 778899988642122335
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC------CcEEEEcccccCCC-CHHHH
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG------ANALVAGSAVFGAK-DYAEA 266 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG------AD~~VvGSaIf~a~-dp~~~ 266 (281)
.-+.++++ ++.. +.++.+.||++ .+++..+.+.| ++.+++||+++... ++++.
T Consensus 176 d~~l~~~i---~~~~-----~~pvi~~GGv~s~~di~~l~~ig~~~~~~~~gvivG~al~~g~l~~~~~ 236 (241)
T d1qo2a_ 176 DFSLTKKI---AIEA-----EVKVLAAGGISSENSLKTAQKVHTETNGLLKGVIVGRAFLEGILTVEVM 236 (241)
T ss_dssp CHHHHHHH---HHHH-----TCEEEEESSCCSHHHHHHHHHHHHHTTTSEEEEEECHHHHTTSSCHHHH
T ss_pred chhhhhhh---hccC-----CceEEEECCCCCHHHHHHHHHccccccCCEeeEEEHHHHHCCCCCHHHH
Confidence 44444444 4433 36899999999 88899887754 89999999997543 55543
|
| >d2fdsa1 c.1.2.3 (A:1-324) Protozoan orotidine monophosphate decarboxylase {Plasmodium berghei [TaxId: 5821]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Protozoan orotidine monophosphate decarboxylase species: Plasmodium berghei [TaxId: 5821]
Probab=97.72 E-value=0.0001 Score=66.23 Aligned_cols=161 Identities=15% Similarity=0.184 Sum_probs=91.2
Q ss_pred cCCHHHHHHcCcC------CCCCeeEEEEecChhh----HHHHHHH-cCCCEEEEcccccccccHHHHHHHHHH-cCCcE
Q 023494 101 TIGPLVVDALRPV------TDLPLDVHLMIVEPEQ----RVPDFIK-AGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKA 168 (281)
Q Consensus 101 ~~G~~~I~~ir~~------t~~~idaHLmv~dp~~----~i~~~~~-aGAd~Itvh~Ea~~~~~i~~~l~~ik~-~G~k~ 168 (281)
.+|++-++.|++. .++++-+|+|..|... |++.+++ .|+|++|+|.-.. .+.+..++....+ .+..+
T Consensus 112 ~~G~~G~~~L~~~i~~l~~~g~~VflDlK~~DIpnTv~~ya~a~~~~l~aD~lTVh~~~G-~d~l~~~~~~~~~~~~kgv 190 (324)
T d2fdsa1 112 PYGSVGINALKNVFDYLNSMNIPTMLDMKINDIGNTVKNYRKFIFEYLKSDSCTINVYMG-TSMLKDICFDYEKNKYYSA 190 (324)
T ss_dssp GGTHHHHHHHHHHHHHHHHTTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-STTHHHHSEETTTTEECEE
T ss_pred HhHHHHHHHHHHHHHHhhccCCcEEEehhhcchHhHHHHHHHHhhccCCCcEEEecccCc-HHHHHHHHHHHHhccCccc
Confidence 5687644444332 5789999999999875 5555555 6999999997753 4556555543333 23444
Q ss_pred EEEECCCCCHH--------------------HHHHhhcc--CC--EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC
Q 023494 169 GVVLNPATSLS--------------------AIECVLDV--VD--LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG 224 (281)
Q Consensus 169 Glai~p~t~ie--------------------~~~~~l~~--vD--~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~ 224 (281)
.+...++.+-. .+.++... .+ +=.++.|- | . ...+.++.+|+..++
T Consensus 191 ~vL~~tSn~~s~~~q~~~~~~~~~~~~~v~~~~~~~a~~~~~~~~~~~~G~Vv-g--a-----t~p~el~~iR~~~~~-- 260 (324)
T d2fdsa1 191 YVLIKTTNKDSFIFQNELSINDKQAYIVMAEETQKMATDLKIDQNNEFIGFVV-G--S-----NAFEEMKIIRNKFPD-- 260 (324)
T ss_dssp EEEEECSSGGGHHHHTTCEETTEEHHHHHHHHHHHHHHHHTTGGGTCCEEEEE-C--T-----TCHHHHHHHHHHSTT--
T ss_pred eeeeecCchHHHHhhhhhccCCcccchhHHHHHHHHHHHHHhhcccCCcceee-c--c-----chhHHHHHHHHhCCC--
Confidence 44433332221 11111100 00 00000000 1 1 113445666666643
Q ss_pred CCCeEEEecCCChh--cHHHHH------HcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 225 VNPWIEVDGGVGPK--NAYKVI------EAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 225 ~~~~I~VDGGI~~e--~i~~~~------~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
..| +-.||..+ +.+.+. +.|+|.+|+||.|+.++||.++++++++.+.
T Consensus 261 --~~i-L~PGIGaQggDq~rv~~~~~a~~~g~~~ivvgR~I~~A~dp~~aa~~i~~~i~ 316 (324)
T d2fdsa1 261 --SYI-LSPGIGAQNGDLYKTLKNGYNKDYEKLLINVGRAITKSPNPKKSSESYYNQII 316 (324)
T ss_dssp --CCE-EECCC-----CHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred --CeE-EeCcccCCCCCHHHHhChhhhhhcCceEEEeChhhccCCCHHHHHHHHHHHHH
Confidence 345 44888865 344443 4588999999999999999999998887653
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=97.63 E-value=0.00059 Score=60.99 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=112.6
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcc--cccccCCHHHHHHcCcCCCCCeeEEEEecChh----------hHHHHHHHcC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRF--VPNITIGPLVVDALRPVTDLPLDVHLMIVEPE----------QRVPDFIKAG 138 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~f--vpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~----------~~i~~~~~aG 138 (281)
+-.+..+...+.|+|+||+==.|+.. .++-..-.+.|+.+.+.+..|+.+===+.+-+ ++.+.++++|
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ll~~G 128 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKTVFVPLTVGGGIKDIVDVDGTKIPALEVASLYFRSG 128 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTTCCSCEEEESSCSCEECTTCCEECHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccccceeEEEecCcccHHHhhhccchhhHHHHHHHHcC
Confidence 34566677888999999973334421 11112235778888777777877643333322 3467889999
Q ss_pred CCEEEEcccccc-----------cccHHHHHHHHHHcCCc-EEEEECCC-------------------------------
Q 023494 139 ADIVSVHCEQSS-----------TIHLHRTLNQIKDLGAK-AGVVLNPA------------------------------- 175 (281)
Q Consensus 139 Ad~Itvh~Ea~~-----------~~~i~~~l~~ik~~G~k-~Glai~p~------------------------------- 175 (281)
||-|.+.-.+.. .+++.-+-+.++.+|-. +.+++...
T Consensus 129 adKVvI~T~ai~~p~~~~e~~~~~~n~~li~~i~~~fGsq~IvvsiD~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~ 208 (323)
T d1jvna1 129 ADKVSIGTDAVYAAEKYYELGNRGDGTSPIETISKAYGAQAVVISVDPKRVYVNSQADTKNKVFETEYPGPNGEKYCWYQ 208 (323)
T ss_dssp CSEEEECHHHHHHHHHHHHTTSCCCSCSHHHHHHHHHCGGGEEEEECEEEEEESSGGGCSSCCEECSSCCTTCCCEEEEE
T ss_pred CCeEEechHHhhChHHHHHHHhhcccchhHHHHHHHhCCceEEEEEEEEeccccccccccccccccccccCCCccceeEE
Confidence 999999864310 01222334555667743 33333210
Q ss_pred ---------C--CH-HHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHH
Q 023494 176 ---------T--SL-SAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAY 241 (281)
Q Consensus 176 ---------t--~i-e~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~ 241 (281)
| ++ +.++.+.+. +--|++-+++---..+.+.-+. ++++++.. ++|+.+-||++ .+++.
T Consensus 209 v~~~gg~~~t~~~l~~~i~~~~~~G~GEIlltdIdrDGt~~G~D~el---~~~i~~~~-----~iPiIasGGi~s~~di~ 280 (323)
T d1jvna1 209 CTIKGGRESRDLGVWELTRACEALGAGEILLNCIDKDGSNSGYDLEL---IEHVKDAV-----KIPVIASSGAGVPEHFE 280 (323)
T ss_dssp EEETTTTEEEEEEHHHHHHHHHHTTCCEEEECCGGGTTTCSCCCHHH---HHHHHHHC-----SSCEEECSCCCSHHHHH
T ss_pred EEEcCCeEecCchHHHHhhhhhccCcceeEEEeecccccccccchhH---HHHHHHhC-----CCCEEEECCCCCHHHHH
Confidence 1 12 333333222 6667776665321222244444 44444443 46888999999 88887
Q ss_pred HH-HHcCCcEEEEccccc-CCCCHHHHHHHHHH
Q 023494 242 KV-IEAGANALVAGSAVF-GAKDYAEAIKGIKT 272 (281)
Q Consensus 242 ~~-~~aGAD~~VvGSaIf-~a~dp~~~~~~l~~ 272 (281)
++ ...|++.+++|+++. +.-++.+.-+.|++
T Consensus 281 ~ll~~~~v~gv~~gs~~~~~~~si~elK~~L~~ 313 (323)
T d1jvna1 281 EAFLKTRADACLGAGMFHRGEFTVNDVKEYLLE 313 (323)
T ss_dssp HHHHHSCCSEEEESHHHHTTSCCHHHHHHHHHH
T ss_pred HHHHhCCCeEEEEhhHHHcCCCCHHHHHHHHHH
Confidence 75 456899999999986 44567665555554
|
| >d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate decarboxylase {Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Decarboxylase domain: Protozoan orotidine monophosphate decarboxylase species: Plasmodium falciparum (isolate 3D7) (Plasmodium falciparum 3D7) [TaxId: 36329]
Probab=97.58 E-value=2.7e-05 Score=70.01 Aligned_cols=169 Identities=15% Similarity=0.096 Sum_probs=90.9
Q ss_pred cCCHHHHHHcCcC------CCCCeeEEEEecChhh----HHHHHH-HcCCCEEEEcccccccccHHHHHHHHHHc-CCcE
Q 023494 101 TIGPLVVDALRPV------TDLPLDVHLMIVEPEQ----RVPDFI-KAGADIVSVHCEQSSTIHLHRTLNQIKDL-GAKA 168 (281)
Q Consensus 101 ~~G~~~I~~ir~~------t~~~idaHLmv~dp~~----~i~~~~-~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G~k~ 168 (281)
.+|++-++.|++. .++++.+|+|..|... |.+..+ ..++|.+|+|.-.. .+.+..+++...+. +..+
T Consensus 110 ~~G~~G~~~L~~~i~~~~~~g~~VflD~K~gDIgnTv~~ya~a~~~~~~aD~vTVhp~~G-~d~l~~~~~~~~~~~~kgv 188 (323)
T d2q8za1 110 PYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNTVKNYRKFIFEYLKSDSCTVNIYMG-TNMLKDICYDEEKNKYYSA 188 (323)
T ss_dssp TTTHHHHHHHHHHHHHHHHHTCCEEEEEEECCCHHHHHHHHHHHHTTSCCSEEEECCTTC-SGGGGGTSEETTTTEECEE
T ss_pred HcCcHHHHHHHHHHHhhcccCceEEEeccccchHHHHHHHHHhhcccCCccEEEeccccc-HHHHHHHHHHHhhccccce
Confidence 6786554444332 4789999999999875 444333 46999999997653 34444444433222 2334
Q ss_pred EEEECCCCCH-HHHHHhhccC---------CEEE------EEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 169 GVVLNPATSL-SAIECVLDVV---------DLVL------IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 169 Glai~p~t~i-e~~~~~l~~v---------D~Il------vmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
.+....++|- ..+......- +.+. -+.-.+|..|----....+.++.+|+..++ ..| +-
T Consensus 189 ~vl~~tSn~~~~~~q~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~G~Vvgat~p~e~~~ir~~~~~----~~i-L~ 263 (323)
T d2q8za1 189 FVLVKTTNPDSAIFQKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPN----CYI-LS 263 (323)
T ss_dssp EEEEECCSTTTHHHHTTCEETTEEHHHHHHHHHHHHHHHTTTGGGTCCEEEEECTTCHHHHHHHHHHSTT----CCE-EE
T ss_pred eeecccCCchHHHHhhhcccccchhHHHHHHHHHHHHHHHhhhccccccceEEeecchHHHHHHHHhCCC----CeE-Ec
Confidence 4433333221 1111110000 0000 000001110100000123445666666543 456 44
Q ss_pred cCCChh--cHHHH------HHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 233 GGVGPK--NAYKV------IEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 233 GGI~~e--~i~~~------~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.||..+ ..+.+ .+.|+|++|+||.|+.++||.++++++++.++
T Consensus 264 PGIGaQggDq~rv~t~~~a~~~g~~~ivvgR~I~~a~dp~~aa~~~~~ei~ 314 (323)
T d2q8za1 264 PGIGAQNGDLHKTLTNGYHKSYEKILINIGRAITKNPYPQKAAQMYYDQIN 314 (323)
T ss_dssp CCSSTTCCCHHHHHHHHCCSSGGGEEEEECHHHHTSSCHHHHHHHHHHHHH
T ss_pred CCccccCCCHhHhhCHHHHhhcCceEEEEChhhcCCCCHHHHHHHHHHHHH
Confidence 888854 34443 35689999999999999999999999887654
|
| >d1nsja_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermotoga maritima [TaxId: 2336]
Probab=97.57 E-value=0.00098 Score=55.34 Aligned_cols=173 Identities=19% Similarity=0.219 Sum_probs=104.9
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CCCCeeEEEEecChhhHHH-HHHHcCCCEEEEc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP-DFIKAGADIVSVH 145 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~-~~~~aGAd~Itvh 145 (281)
.++ +.++.+.+.|+|++=+ .|.|.- ...++..++|.+. +....-|=+.++.+...+. .+.+.+.|++-+|
T Consensus 10 t~~-~da~~~~~~gad~iGf-----I~~~~SpR~Vs~~~a~~i~~~~~~~~~~V~V~v~~~~~~i~~~~~~~~~~~vQlh 83 (205)
T d1nsja_ 10 TNL-EDALFSVESGADAVGF-----VFYPKSKRYISPEDARRISVELPPFVFRVGVFVNEEPEKILDVASYVQLNAVQLH 83 (205)
T ss_dssp CSH-HHHHHHHHHTCSEEEE-----ECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHHTCSEEEEC
T ss_pred CcH-HHHHHHHhCCCCEEeE-----eccCCCCCccCHHHHHHHHhhhcccceeeccccccHHHHHHhhhhhccccchhcc
Confidence 344 4467778889999744 333331 3467777777543 3334444456665555544 4567899999999
Q ss_pred ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecC--CCCCCccchhHHHHHHHHHHHhhh
Q 023494 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNP--GFGGQSFIESQVKKISDLRRMCLE 222 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~p--G~~GQ~f~~~~l~kI~~lr~l~~~ 222 (281)
... +. +.++.+++. .....+...... ..+..... ..+++++-+..+ |-+|+.|.-..+..+.. .
T Consensus 84 g~e----~~-~~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~l~d~~~~~~GGtG~~~dw~~~~~~~~------~ 150 (205)
T d1nsja_ 84 GEE----PI-ELCRKIAER-ILVIKAVGVSNE-RDMERALNYREFPILLDTKTPEYGGSGKTFDWSLILPYRD------R 150 (205)
T ss_dssp SCC----CH-HHHHHHHTT-SEEEEEEEESSH-HHHHHHGGGTTSCEEEEESCSSSSSCCSCCCGGGTGGGGG------G
T ss_pred chh----hH-HHHhhcccc-eeeeeeccccch-HHHHHHhhcccceeeeccccccCCCCCcccchhhcccchh------c
Confidence 863 22 345555544 344444443333 33344333 356666665544 44578887665443321 1
Q ss_pred cCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccccCC---CCHH
Q 023494 223 KGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 223 ~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf~a---~dp~ 264 (281)
..++.+.|||+++|+.++++ .+++++=+-|.+=.+ .|+.
T Consensus 151 ---~~~~~LAGGl~~~Nv~~ai~~~~p~gvDvsSgvE~~~G~KD~~ 193 (205)
T d1nsja_ 151 ---FRYLVLSGGLNPENVRSAIDVVRPFAVDVSSGVEAFPGKKDHD 193 (205)
T ss_dssp ---SSCEEEESSCCTTTHHHHHHHHCCSEEEESGGGEEETTEECHH
T ss_pred ---ccceeeecCCCHHHHHHHHHHhCCCEEEEcCcccCCCCccCHH
Confidence 12567899999999998875 788988888887432 4664
|
| >d2b4ga1 c.1.4.1 (A:2-313) Dihydroorotate dehydrogenase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Trypanosoma brucei [TaxId: 5691]
Probab=97.54 E-value=0.00081 Score=59.07 Aligned_cols=212 Identities=17% Similarity=0.255 Sum_probs=126.9
Q ss_pred eEEEeccC-ccCHHHHHHHHHHcCCCeEEEEee-----eCc-----------ccccc---cCCHH----HHHHcCcCCCC
Q 023494 61 SPSILSAN-FAKLGEQVKAVELAGCDWIHVDVM-----DGR-----------FVPNI---TIGPL----VVDALRPVTDL 116 (281)
Q Consensus 61 ~pSila~D-~~~l~~~l~~l~~~G~d~iHiDIm-----DG~-----------fvpn~---~~G~~----~I~~ir~~t~~ 116 (281)
+|-++++= +.+-.+.++.+.+.|...+.+--. .|+ ....+ ..|.+ .++..++..+.
T Consensus 13 nPi~~aaG~~~~~~~~~~~~~~~g~g~vv~ktit~~p~~gnp~Pr~~~~~~~~~N~~G~~n~G~~~~~~~l~~~~~~~~~ 92 (312)
T d2b4ga1 13 NPFMNAAGVLCTTEEDLRRMTESESGSLIGKSCTLAPRTGNPEPRYFGLPLGSINSMGLPNLGVDFYLSYAAQTHDYSRK 92 (312)
T ss_dssp SSEEECTTSSCSSHHHHHHHHHSSCSCEEEEEECSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCCTTTC
T ss_pred CCcEeCcCCCCCCHHHHHHHHHcCCCEEEeCcccccCCCCCCCCeEEecCchheeccccCcchHHHHHHHHHHhhhcccc
Confidence 35555543 445556788888888877655211 111 11111 23554 33444555678
Q ss_pred CeeEEEEecChhhHHHHH------HHcCCCEEEEccccc----------ccccHHHHHHHHHH-cCCcEEEEECCCCCHH
Q 023494 117 PLDVHLMIVEPEQRVPDF------IKAGADIVSVHCEQS----------STIHLHRTLNQIKD-LGAKAGVVLNPATSLS 179 (281)
Q Consensus 117 ~idaHLmv~dp~~~i~~~------~~aGAd~Itvh~Ea~----------~~~~i~~~l~~ik~-~G~k~Glai~p~t~ie 179 (281)
|+.+-++-.+++.+.+.+ .+++||++.+-.-+. ..+...++++.+++ .++.+.+-+.|.....
T Consensus 93 pii~si~g~~~~~~~~~~~~~~~~~~~~ad~iElNiScPn~~~~~~~~~~~~~~~~i~~~v~~~~~~pi~vKl~p~~~~~ 172 (312)
T d2b4ga1 93 PLFLSMSGLSVEESVEMVKKLVPITKEKGTILELNLSCPNVPGKPQVGYDFDTTRTYLQKVSEAYGLPFGVKMPPYFDIA 172 (312)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHHCCEEEEECCCCCSTTCCCGGGCHHHHHHHHHHHHHHHCSCEEEEECCCCCHH
T ss_pred ceeccccccccccHHHHHHHHHHhhhhcccceeeccccCCcCcchhhhccHHHHHHHHHHhhccccccceeccccccchh
Confidence 999988877766554432 467899999854321 01235566777765 3677788899988775
Q ss_pred HHHH---hhcc---CCEEEE-------Eeec--------------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 180 AIEC---VLDV---VDLVLI-------MSVN--------------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 180 ~~~~---~l~~---vD~Ilv-------msV~--------------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
.+.. .+.. ++.+.. +.+. -|.+|.+..|.+++.++++++..+ +.+|..-
T Consensus 173 ~~~~~~~~~~~~~~~~~i~~~nt~~~~~~~~~~~~~~~~~~~~~~GGlSG~~l~~~al~~v~~~~~~~~----~~~Iig~ 248 (312)
T d2b4ga1 173 HFDMAAAVLNDFPLVKFITCVNSIGNGLVIDPANETVVIKPKQGFGGLGGKYVLPTALANVNAFFRRCP----DKLVFGC 248 (312)
T ss_dssp HHHHHHHHHTTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEEEGGGHHHHHHHHHHHHHHCT----TSEEEEE
T ss_pred HHHHHHHHHHhhhhhhhhhhcccccccccccccCCCccccccccccCcccccccchhhHHHHHHHHHcC----CCceeec
Confidence 4432 2222 222221 1111 112345556778888888777654 2468789
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEccccc-CCCC-HHHHHHHHHHhcCc
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVF-GAKD-YAEAIKGIKTSKRP 276 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf-~a~d-p~~~~~~l~~~~~~ 276 (281)
|||. .+++-+.+.+||+.+=++|+++ +-.. ..+..+.|.+.+++
T Consensus 249 GGI~s~~Da~e~i~aGAs~Vqv~Tal~~~Gp~~i~~i~~~L~~~l~~ 295 (312)
T d2b4ga1 249 GGVYSGEEAFLHILAGASMVQVGTALHDEGPIIFARLNKELQEIMTN 295 (312)
T ss_dssp SSCCSHHHHHHHHHHTEEEEEESHHHHHHCTTHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHcCCChheeehhhHhcCcHHHHHHHHHHHHHHHH
Confidence 9995 9999999999999999999975 3333 34555666665543
|
| >d1wv2a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.53 E-value=0.00039 Score=59.73 Aligned_cols=188 Identities=16% Similarity=0.158 Sum_probs=108.4
Q ss_pred ccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHcC--
Q 023494 69 FAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKAG-- 138 (281)
Q Consensus 69 ~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~aG-- 138 (281)
+.+.+...+.++..|++.+-+=+-=-.. ..-.-+..+...++ +.+++++-+..+ +..++..+++
T Consensus 21 y~s~~~~~~ai~aSgaeiVTVAvRR~~~-~~~~~~~~l~~~i~-----~~~~~~LPNTAGc~taeeAv~~A~larE~~~~ 94 (243)
T d1wv2a_ 21 YKDLDETRRAIEASGAEIVTVAVRRTNI-GQNPDEPNLLDVIP-----PDRYTILPNTAGCYDAVEAVRTCRLARELLDG 94 (243)
T ss_dssp SSSHHHHHHHHHHSCCSEEEEEGGGCCC--------------C-----TTTSEEEEECTTCCSHHHHHHHHHHHHTTTTS
T ss_pred CCCHHHHHHHHHHhCCCEEEEEcccccc-CCCcccchHHHhcc-----ccCeeecccccccccHHHHHHHHHHHHHHhCC
Confidence 3455555666777888876542211000 00011112222222 234556665543 2233445654
Q ss_pred CCEEEEcccccc---cccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEee-cCCCCCCccc-hhH
Q 023494 139 ADIVSVHCEQSS---TIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSV-NPGFGGQSFI-ESQ 209 (281)
Q Consensus 139 Ad~Itvh~Ea~~---~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV-~pG~~GQ~f~-~~~ 209 (281)
-++|-+-.-..+ .++..++++.++. .|.++-.-++++ .-..+++.+ .+.. +|+- .|.-+||... +..
T Consensus 95 ~~~iKLEVi~d~~~L~Pd~~etl~Aa~~Lv~egF~Vlpy~~~D--~v~ak~le~~Gc~~--vMplgsPIGsg~Gi~n~~~ 170 (243)
T d1wv2a_ 95 HNLVKLEVLADQKTLFPNVVETLKAAEQLVKDGFDVMVYTSDD--PIIARQLAEIGCIA--VMPLAGLIGSGLGICNPYN 170 (243)
T ss_dssp CCEEEECCBSCTTTCCBCHHHHHHHHHHHHTTTCEEEEEECSC--HHHHHHHHHSCCSE--EEECSSSTTCCCCCSCHHH
T ss_pred CceEEEeeeccccccCCcHHHHHHHHHHhhcCceEEEeccCCC--HHHHhHHHHcCcee--eeecccccccccccccHHH
Confidence 478877643211 3456677777664 577777777653 222333322 2444 4554 4544565543 554
Q ss_pred HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhc
Q 023494 210 VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSK 274 (281)
Q Consensus 210 l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~ 274 (281)
++. +++. .++++-||+||. +.++....+.|+|.+-+.|+|+++.||...++.|+...
T Consensus 171 l~~---i~~~-----~~vpvivdAGIg~psdaa~AMElG~dgVLvnsaIa~A~dP~~mA~A~~~Av 228 (243)
T d1wv2a_ 171 LRI---ILEE-----AKVPVLVDAGVGTASDAAIAMELGCEAVLMNTAIAHAKDPVMMAEAMKHAI 228 (243)
T ss_dssp HHH---HHHH-----CSSCBEEESCCCSHHHHHHHHHHTCSEEEESHHHHTSSSHHHHHHHHHHHH
T ss_pred HHh---cccc-----CCcceEeecccCCHHHHHHHHHccCCEEEechHhhcCCCHHHHHHHHHHHH
Confidence 433 3332 357888999999 88999999999999999999999999999999998754
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=97.50 E-value=0.00055 Score=61.34 Aligned_cols=138 Identities=25% Similarity=0.319 Sum_probs=86.5
Q ss_pred CCeeEEEEec-ChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhc-cCCEEE
Q 023494 116 LPLDVHLMIV-EPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLD-VVDLVL 192 (281)
Q Consensus 116 ~~idaHLmv~-dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~-~vD~Il 192 (281)
..+.+=+-++ +-.++++.+.++|+|.+++...........+.++.+|+...++-+ +=|..| .+..+.+.+ .+|.|.
T Consensus 87 ~~v~~~vgv~~~~~e~~~~li~agvd~ivId~A~G~~~~~~~~ik~ik~~~~~~~viaGnV~t-~~~a~~l~~~GaD~v~ 165 (330)
T d1vrda1 87 LLVGAAVGTSPETMERVEKLVKAGVDVIVIDTAHGHSRRVIETLEMIKADYPDLPVVAGNVAT-PEGTEALIKAGADAVK 165 (330)
T ss_dssp BCCEEEECSSTTHHHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTSCEEEEEECS-HHHHHHHHHTTCSEEE
T ss_pred cEEEEEEecCHHHHHHHHHHHHCCCCEEEEecCCCCchhHHHHHHHHHHhCCCCCEEeechhH-HHHHHHHHHcCCCEEe
Confidence 4444444433 223467888999999999875543344566778888876544433 334334 344555544 499988
Q ss_pred EEeecCCCC-------CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 193 IMSVNPGFG-------GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 193 vmsV~pG~~-------GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
+ .+-||.. |- -.|+ +.-+.+..+... +.+.+|..||||. ...+...+.+|||.+-+||.+-.
T Consensus 166 V-Gig~Gs~ctt~~~~G~-g~p~-~sai~~~~~~~~--~~~vpvIAdGGi~~~gdiakAla~GAd~Vm~Gs~fa~ 235 (330)
T d1vrda1 166 V-GVGPGSICTTRVVAGV-GVPQ-LTAVMECSEVAR--KYDVPIIADGGIRYSGDIVKALAAGAESVMVGSIFAG 235 (330)
T ss_dssp E-CSSCSTTCHHHHHHCC-CCCH-HHHHHHHHHHHH--TTTCCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHT
T ss_pred e-ccccCccccccceecc-cccc-chhHHHHHHHHH--hcCceEEecCCcccCCchheeeeccCceeeecchhee
Confidence 7 5666531 10 0121 222333333332 3468899999999 77999999999999999998765
|
| >d1juba_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme A [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme A [TaxId: 1358]
Probab=97.48 E-value=0.0015 Score=56.99 Aligned_cols=159 Identities=16% Similarity=0.268 Sum_probs=99.0
Q ss_pred CCCCeeEEEEecChhhHHH---HHHHcC-CCEEEEccccccc----------ccHHHHHHHHHHc-CCcEEEEECCCCCH
Q 023494 114 TDLPLDVHLMIVEPEQRVP---DFIKAG-ADIVSVHCEQSST----------IHLHRTLNQIKDL-GAKAGVVLNPATSL 178 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~---~~~~aG-Ad~Itvh~Ea~~~----------~~i~~~l~~ik~~-G~k~Glai~p~t~i 178 (281)
.+.|+-+.++-.++..+.+ .+.+++ +|.+.+..-+... +.+.+.++++++. .+.+.+-+.|....
T Consensus 92 ~~~pvi~si~~~~~~~~~~~~~~~~~~~~ad~ielNiscPn~~~~~~~~~~~~~~~~~~~~v~~~~~~pv~vKl~p~~~~ 171 (311)
T d1juba_ 92 QEGPIFFSIAGMSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDL 171 (311)
T ss_dssp SSSCCEEEECCSSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSH
T ss_pred cCCCceeeccccccchhHHHHHHHhhccccceeeeccccccccccccccccHHHHHHHHHHhhcccccceeecccccchh
Confidence 5678999998888876544 334555 8998888654211 1244566666654 44567778887765
Q ss_pred HHHHHhhc-----cCCEEEEE-------eecC-----------CCC---CCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 179 SAIECVLD-----VVDLVLIM-------SVNP-----------GFG---GQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 179 e~~~~~l~-----~vD~Ilvm-------sV~p-----------G~~---GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
..+....+ .+|.+... ...+ |++ |....|..++.++++++.. +.+++|...
T Consensus 172 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~sg~~l~~~al~~i~~i~~~~---~~~~~Iig~ 248 (311)
T d1juba_ 172 VHFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRL---KPEIQIIGT 248 (311)
T ss_dssp HHHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTS---CTTSEEEEE
T ss_pred hHHHHHHHHHHhhccceEeccccccccccccccccccccccccccCCccccccCchHHHHHHHHHHhc---CCCeeEEec
Confidence 44433322 25555432 1111 122 3334466666666665543 446899999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccC-CCC-HHHHHHHHHHhcC
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFG-AKD-YAEAIKGIKTSKR 275 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~-a~d-p~~~~~~l~~~~~ 275 (281)
|||. .+++.+++.+|||.+=++|+++. ..+ +.+..++|++.++
T Consensus 249 GGI~s~~Da~~~i~aGA~~Vql~tal~~~Gp~~i~~i~~~L~~~m~ 294 (311)
T d1juba_ 249 GGIETGQDAFEHLLCGATMLQIGTALHKEGPAIFDRIIKELEEIMN 294 (311)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECHHHHHHCTHHHHHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHcCCCceeeeHhhHhcChHHHHHHHHHHHHHHH
Confidence 9999 88999999999999999999763 232 3344455555443
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=97.47 E-value=0.0027 Score=54.33 Aligned_cols=197 Identities=13% Similarity=0.157 Sum_probs=134.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccc-cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI-TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHC 146 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~-~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~ 146 (281)
+.-++.+..+.++++|+|-|-+ |-=|.- -.-.+-+..||+..+.++.. -..--..+++.+.+.-++.+|+-+
T Consensus 22 ~~Pd~~~~a~~~~~~GadgITv-----H~R~DrRHI~~~Dv~~l~~~~~~~lNl--E~a~~~e~i~ia~~~kP~qvtLVP 94 (242)
T d1m5wa_ 22 AYPDPVQAAFIAEQAGADGITV-----HLREDRRHITDRDVRILRQTLDTRMNL--EMAVTEEMLAIAVETKPHFCCLVP 94 (242)
T ss_dssp CCSCHHHHHHHHHTTTCSEEEE-----ECCTTCSSSCHHHHHHHHHHCSSEEEE--EECSSHHHHHHHHHHCCSEEEECC
T ss_pred CCCCHHHHHHHHHHcCCCeEEe-----CCCCCccccchHHHHHHHHHhhccccc--ccccchhHHHHHHHhccceEEEee
Confidence 4557788899999999998644 212221 23356677888776666554 444444588888999999999998
Q ss_pred ccc---c----------cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCC-CCCCccchhHHH
Q 023494 147 EQS---S----------TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPG-FGGQSFIESQVK 211 (281)
Q Consensus 147 Ea~---~----------~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG-~~GQ~f~~~~l~ 211 (281)
|.. + ...+..+++.+++.|+++.+.+.|+ .+.++...+ .+|.|-+.|-.=. ..+++-....++
T Consensus 95 e~r~elTTegGld~~~~~~~L~~~i~~l~~~girvSLFiDpd--~~~i~~a~~lGad~IElhTG~Ya~a~~~~~~~~el~ 172 (242)
T d1m5wa_ 95 EKRQEVTTEGGLDVAGQRDKMRDACKRLADAGIQVSLFIDAD--EEQIKAAAEVGAPFIEIHTGCYADAKTDAEQAQELA 172 (242)
T ss_dssp CCSSCSSCCSCCCSGGGHHHHHHHHHHHHHTTCEEEEEECSC--HHHHHHHHHTTCSEEEEECHHHHHCCSHHHHHHHHH
T ss_pred cCccccCcCCceeehhhHHHHHHHHHHHHhcCCeEEEEeccc--hhhHHHHhhcCcceeeeecccccccccchhhHHHHH
Confidence 742 0 1238889999999999999999985 344444333 4899988654100 111122234467
Q ss_pred HHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCC---CCHHHHHHHHHHhcC
Q 023494 212 KISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGA---KDYAEAIKGIKTSKR 275 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a---~dp~~~~~~l~~~~~ 275 (281)
++++..++..+. ++.+-+.=|+|.+|++.+.+.+ .+=+-+|-+|+.. --.+++++++++.++
T Consensus 173 ~i~~aa~~A~~l--GL~VnAGHgLn~~Nl~~i~~ip~i~EvsIGHaiI~eal~~Gl~~aV~~~~~ii~ 238 (242)
T d1m5wa_ 173 RIAKAATFAASL--GLKVNAGHGLTYHNVKAIAAIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLML 238 (242)
T ss_dssp HHHHHHHHHHHT--TCEEEEESSCCTTTHHHHHTCTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCcccCCCCcCccchHHHhcCCCCeEEeccHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777776554 5778889999999999887654 5778889887742 246688888887765
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=97.44 E-value=0.00085 Score=61.33 Aligned_cols=128 Identities=23% Similarity=0.358 Sum_probs=83.0
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhc-cCCEEEEEeecCCCCC--C
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLD-VVDLVLIMSVNPGFGG--Q 203 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~G--Q 203 (281)
.++.+.+.++|+|.+.+........+..+.++++|+....+-+ +=|..| .+..+.+++ .+|.|.+ .+=||-.- +
T Consensus 153 ~~ra~~L~~aG~D~ivID~AhG~s~~~~~~i~~ik~~~~~v~vIaGNV~T-~e~a~~L~~~GaD~VkV-GiGpGs~CtTr 230 (388)
T d1eepa_ 153 IERVEELVKAHVDILVIDSAHGHSTRIIELIKKIKTKYPNLDLIAGNIVT-KEAALDLISVGADCLKV-GIGPGSICTTR 230 (388)
T ss_dssp HHHHHHHHHTTCSEEEECCSCCSSHHHHHHHHHHHHHCTTCEEEEEEECS-HHHHHHHHTTTCSEEEE-CSSCSTTSHHH
T ss_pred HHHHHHHHhhccceeeeeccccchHHHHHHHHHHHHHCCCCceeeccccC-HHHHHHHHhcCCCeeee-ccccccccccc
Confidence 3467778999999999976543345677888888876544443 334333 444555555 4999977 33344210 0
Q ss_pred c---c-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 204 S---F-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 204 ~---f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
. + .|+ +.-+.+..+.. ++.+.+|..||||. ...+.+.+.+|||.+-+||.+-+.
T Consensus 231 ~~~GvG~pq-~sai~~~~~~~--~~~~vpiIADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~ 289 (388)
T d1eepa_ 231 IVAGVGVPQ-ITAICDVYEAC--NNTNICIIADGGIRFSGDVVKAIAAGADSVMIGNLFAGT 289 (388)
T ss_dssp HHHCCCCCH-HHHHHHHHHHH--TTSSCEEEEESCCCSHHHHHHHHHHTCSEEEECHHHHTB
T ss_pred cccccCcch-HHHHHHHHHHh--ccCCceEEeccccCcCCceeeeEEeccceeecchhhhcc
Confidence 0 1 122 22233333332 34468899999999 779999999999999999998754
|
| >d1xm3a_ c.1.31.1 (A:) Thiazole biosynthesis protein ThiG {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: ThiG-like family: ThiG-like domain: Thiazole biosynthesis protein ThiG species: Bacillus subtilis [TaxId: 1423]
Probab=97.38 E-value=0.00059 Score=58.39 Aligned_cols=188 Identities=18% Similarity=0.148 Sum_probs=115.8
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChh--------hHHHHHHHc-C
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPE--------QRVPDFIKA-G 138 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~--------~~i~~~~~a-G 138 (281)
-+.+.+...+.++..|++.+-+=+---. .+-.-+..++..|+. ..++++-+..+ +..++..++ |
T Consensus 20 kY~s~~~~~~ai~aSgaeiVTVAlRR~~--~~~~~~~~~l~~i~~-----~~~~lLPNTAGc~tA~EAvr~A~lARE~~~ 92 (251)
T d1xm3a_ 20 KYPSFDIQKEAVAVSESDILTFAVRRMN--IFEASQPNFLEQLDL-----SKYTLLPNTAGASTAEEAVRIARLAKASGL 92 (251)
T ss_dssp CSSCHHHHHHHHHHHTCSEEEEETTSST--TC-------CTTCCG-----GGSEEEEECTTCSSHHHHHHHHHHHHHTTC
T ss_pred CCCCHHHHHHHHHHhCCCEEEEEEeeec--CcCCCCcchhhhccc-----cceEEccchHHHhhHHHHHHHHHHHHHhcC
Confidence 4456666667778889998766432210 000112233333332 24566766654 233445565 5
Q ss_pred CCEEEEccccc---ccccHHHHHHHHH---HcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCcc-chhHH
Q 023494 139 ADIVSVHCEQS---STIHLHRTLNQIK---DLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSF-IESQV 210 (281)
Q Consensus 139 Ad~Itvh~Ea~---~~~~i~~~l~~ik---~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f-~~~~l 210 (281)
-|||-+-.-.. -.+++.+++++.+ +.|.++-.-++++ ....+.+.+ .+..|+-+....|. ||-. .|+.+
T Consensus 93 t~~IKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlpY~~~D--~v~ak~Le~~Gc~avMPlgsPIGS-g~Gl~n~~~l 169 (251)
T d1xm3a_ 93 CDMIKVEVIGCSRSLLPDPVETLKASEQLLEEGFIVLPYTSDD--VVLARKLEELGVHAIMPGASPIGS-GQGILNPLNL 169 (251)
T ss_dssp CSSEEECCBCCTTTCCBCHHHHHHHHHHHHHTTCCEEEEECSC--HHHHHHHHHHTCSCBEECSSSTTC-CCCCSCHHHH
T ss_pred CceEEEEEecCCCCcCCCHHHHHHHHHHHHhCCcEEEEecCCC--HHHHHHHHHcCChhHHHhhhhhhc-CCCcCChHHH
Confidence 78887764321 1345667777665 5688888888753 323333333 25555544445564 4433 35544
Q ss_pred HHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 211 KKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 211 ~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
+.+++. .++++.||+||. +.++.+..+.|+|.+-+.|+|.++.||...++.|+..
T Consensus 170 ---~~i~~~-----~~vPvIvDAGIG~pSdAa~AMElG~daVLvNTAIA~a~dPv~MA~A~~~A 225 (251)
T d1xm3a_ 170 ---SFIIEQ-----AKVPVIVDAGIGSPKDAAYAMELGADGVLLNTAVSGADDPVKMARAMKLA 225 (251)
T ss_dssp ---HHHHHH-----CSSCBEEESCCCSHHHHHHHHHTTCSEEEESHHHHTSSSHHHHHHHHHHH
T ss_pred ---HHHHhc-----CCccEEEecCCCCHHHHHHHHHccCCEEEechhhhcCCCHHHHHHHHHHH
Confidence 444433 247899999999 8899999999999999999999999999998888864
|
| >d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Biotin synthase domain: Biotin synthase species: Escherichia coli [TaxId: 562]
Probab=97.33 E-value=0.011 Score=51.00 Aligned_cols=193 Identities=16% Similarity=0.188 Sum_probs=107.4
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
..+.++++.+.+.|...+ -+.+|.+... ....+ +++.+++. ...+.++....+.+ .++.++++|++.+.+.
T Consensus 76 e~i~~~~~~~~~~G~~~~--~~~~g~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~l~~e-~l~~lk~aG~~~i~~~ 150 (312)
T d1r30a_ 76 EQVLESARKAKAAGSTRF--CMGAAWKNPH-ERDMPYLEQMVQGVKAM-GLEACMTLGTLSES-QAQRLANAGLDYYNHN 150 (312)
T ss_dssp HHHHHHHHHHHHTTCSEE--EEEECCSSCC-TTTHHHHHHHHHHHHHT-TSEEEEECSSCCHH-HHHHHHHHCCCEEECC
T ss_pred HHHHHHHHHHHHcCCEEE--EEccCCCCCc-hhhHHHHHHHHHhcccc-cceeeeccccchHH-HHHHhhcccceeEecc
Confidence 345566677777887754 4566755432 22233 33333332 23333343333433 4677899999999999
Q ss_pred cccc-----------ccccHHHHHHHHHHcCCcEE--EEEC-CCCCHHHHHHhh---c---cCCEEEEEeec--CCCC--
Q 023494 146 CEQS-----------STIHLHRTLNQIKDLGAKAG--VVLN-PATSLSAIECVL---D---VVDLVLIMSVN--PGFG-- 201 (281)
Q Consensus 146 ~Ea~-----------~~~~i~~~l~~ik~~G~k~G--lai~-p~t~ie~~~~~l---~---~vD~IlvmsV~--pG~~-- 201 (281)
.|+. +.++..++++.+++.|++++ +.+. ++|.-+.++.+. + ..+.+.++... ||..
T Consensus 151 iEs~~~~~~~~~~~~~~~~~~~~~~~a~~~Gi~~~~~~i~G~~et~~d~~~~l~~l~~l~~~~~~i~~~~~~p~~gT~l~ 230 (312)
T d1r30a_ 151 LDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLA 230 (312)
T ss_dssp CBSCHHHHHHHCCSSCHHHHHHHHHHHHHHHCEEECCEEECSSCCHHHHHHHHHHHHSSSSCCSEEEEEECCCCTTSTTS
T ss_pred cchhhhhhccCCCCCCHHHHHHHHHHHHHhccceecceEecCcCcHHHHHHHHHHHHhcCCCCCeeeeccccCCCCcccc
Confidence 9863 11234567888999999875 3443 445444444432 1 23566655553 4532
Q ss_pred CCc-cc-hhHHHHHHHHHHHhhhcCCCCeEEEecC---CChhcHHHHHHcCCcEEEEcccccCC--CCHHHHHHHHH
Q 023494 202 GQS-FI-ESQVKKISDLRRMCLEKGVNPWIEVDGG---VGPKNAYKVIEAGANALVAGSAVFGA--KDYAEAIKGIK 271 (281)
Q Consensus 202 GQ~-f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGG---I~~e~i~~~~~aGAD~~VvGSaIf~a--~dp~~~~~~l~ 271 (281)
+++ -. .+.+.-+.-.|=+++. ..|.+.+| +..+.....+.+|||.++.|..+..+ .++++-.+-++
T Consensus 231 ~~~~~~~~e~l~~iA~~Rl~lp~----~~i~i~~~~~~~~~~~~~~~L~~Gan~~~~~~~~~t~~~~~~~~~~~~i~ 303 (312)
T d1r30a_ 231 DNDDVDAFDFIRTIAVARIMMPT----SYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 303 (312)
T ss_dssp SCCCCCHHHHHHHHHHHHHHCTT----SEEEEESSGGGSCHHHHHHHHHHTCCEEECSSBSSSSBCCCHHHHHHHHH
T ss_pred cccCCCHHHHHHHHHHHHHhCCC----cceEEEechhhcCHHHHHHHHhcCCcEEEecCccccCCCCCHHHHHHHHH
Confidence 221 12 2334445555555443 34555554 33455567799999999999776544 45554444444
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.29 E-value=0.0017 Score=59.01 Aligned_cols=127 Identities=19% Similarity=0.194 Sum_probs=82.1
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE-EECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCC---
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV-VLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQ--- 203 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl-ai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ--- 203 (281)
.+++.+.++|+|.++++.-........+.++.+|+....+-+ +=|..|+ +..+.+.+ .+|.|.+. +-||-.-.
T Consensus 122 ~~~~~l~~agv~vi~id~a~g~~~~~~~~i~~ik~~~~~~~iIaGnVaT~-e~a~~L~~aGAD~VkVG-iG~Gs~ctTr~ 199 (378)
T d1jr1a1 122 YRLDLLALAGVDVVVLDSSQGNSIFQINMIKYMKEKYPNLQVIGGNVVTA-AQAKNLIDAGVDALRVG-MGCGSICITQE 199 (378)
T ss_dssp HHHHHHHHHTCCEEEECCSSCCSHHHHHHHHHHHHHSTTCEEEEEEECSH-HHHHHHHHHTCSEEEEC-SSCSTTBCHHH
T ss_pred HHHHHHHhhccceEeeeccCccchhhHHHHHHHHHHCCCCceeecccccH-HHHHHHHHhCCCEEeec-ccccccccccc
Confidence 346778899999999987654345567788888887654444 3444444 33444443 59998763 33332100
Q ss_pred --cc-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 204 --SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 204 --~f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+ .| .+.-+....+... +++++|..||||. ...+...+.+|||.+-+||.+-..
T Consensus 200 ~tGvG~p-q~sai~~~~~~a~--~~~vpIIADGGi~~~gdiakAla~GAd~VMmGs~fAgt 257 (378)
T d1jr1a1 200 VLACGRP-QATAVYKVSEYAR--RFGVPVIADGGIQNVGHIAKALALGASTVMMGSLLAAT 257 (378)
T ss_dssp HHCCCCC-HHHHHHHHHHHHG--GGTCCEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ccccCcc-cchhhhHHHHhhc--ccCCceecccccccCCceeeEEEeecceeeecceeeee
Confidence 01 11 1333344444333 3468899999999 779999999999999999998754
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.23 E-value=0.0021 Score=58.19 Aligned_cols=128 Identities=25% Similarity=0.354 Sum_probs=80.9
Q ss_pred hhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEE-EEECCCCCHHHHHHhhc-cCCEEEEEeecCCCC--CC
Q 023494 128 EQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAG-VVLNPATSLSAIECVLD-VVDLVLIMSVNPGFG--GQ 203 (281)
Q Consensus 128 ~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~G-lai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~--GQ 203 (281)
.+.++.+.++|+|.+.+...........+.++.+|+.-..+- ++=|..| .+..+++.+ .+|.|.+ .+-||-. ..
T Consensus 109 ~er~~~l~~agvd~ivID~A~G~s~~~~~~i~~ik~~~~~~~iIaGNV~T-~e~a~~L~~aGaD~VkV-GiG~Gs~CTTr 186 (365)
T d1zfja1 109 FERAEALFEAGADAIVIDTAHGHSAGVLRKIAEIRAHFPNRTLIAGNIAT-AEGARALYDAGVDVVKV-GIGPGSICTTR 186 (365)
T ss_dssp HHHHHHHHHHTCSEEEECCSCTTCHHHHHHHHHHHHHCSSSCEEEEEECS-HHHHHHHHHTTCSEEEE-CSSCCTTBCHH
T ss_pred HHHHHHHHHcCCCEEEEECCcccccchhHHHHHHHhhCCCcceeeccccc-HHHHHHHHhcCCceEEe-eecccccccCc
Confidence 356777889999999997654323456677888887643332 3333333 344555555 4999876 3444421 00
Q ss_pred ---cc-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 204 ---SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 204 ---~f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+ .|+ +.-|.+..+...+ ++.+|..||||. ...+.+.+.+|||.+-+||.+-+.
T Consensus 187 ~~tGvGvPq-~sai~~~~~~~~~--~~~~iIADGGi~~~GDi~KAla~GAd~VMlG~~lAg~ 245 (365)
T d1zfja1 187 VVAGVGVPQ-VTAIYDAAAVARE--YGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMFAGT 245 (365)
T ss_dssp HHTCCCCCH-HHHHHHHHHHHHH--TTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ceeeeeccc-hhHHHHHHHHHHh--CCceEEecCCcCcchhhhhhhhccCCEEEecchhccc
Confidence 01 122 2223333333333 357899999999 779999999999999999998764
|
| >d1v5xa_ c.1.2.4 (A:) N-(5'phosphoribosyl)antranilate isomerase, PRAI {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Tryptophan biosynthesis enzymes domain: N-(5'phosphoribosyl)antranilate isomerase, PRAI species: Thermus thermophilus [TaxId: 274]
Probab=97.20 E-value=0.0073 Score=49.63 Aligned_cols=172 Identities=17% Similarity=0.176 Sum_probs=101.6
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcC-CCCCeeEEEEecChhhH-HHHHHHcCCCEEEEc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPV-TDLPLDVHLMIVEPEQR-VPDFIKAGADIVSVH 145 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~-i~~~~~aGAd~Itvh 145 (281)
.++ +.++.+.+.|+|++=+ .|.|.- ...++..++|.+. ++...-|=+.++.+... .+.+.+.+.|++-+|
T Consensus 9 t~~-ed~~~~~~~gad~iGf-----if~~~SpR~vs~~~a~~i~~~~~~~~~~V~Vf~~~~~~~i~~~~~~~~~d~vQlH 82 (200)
T d1v5xa_ 9 TRL-EDALLAEALGAFALGF-----VLAPGSRRRIAPEAARAIGEALGPFVVRVGVFRDQPPEEVLRLMEEARLQVAQLH 82 (200)
T ss_dssp CCH-HHHHHHHHHTCSEEEE-----ECCTTCTTBCCHHHHHHHHHHSCSSSEEEEEESSCCHHHHHHHHHHTTCSEEEEC
T ss_pred CcH-HHHHHHHhCCCCEEEE-----EcCCCCCCCcCHHHHHHHHHhhcCceeeeeeeeechhhhhhhhhccccccccccc
Confidence 344 4477888899999744 333321 3467777777543 32223333445444444 556678999999999
Q ss_pred ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCC
Q 023494 146 CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGV 225 (281)
Q Consensus 146 ~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~ 225 (281)
... ++ +.++.++ ....+-.++....+.. .+.....+|++++=+-.+| +|..+.-.-...+ ...
T Consensus 83 g~e----~~-~~~~~l~-~~~~iik~~~~~~~~~-~~~~~~~~~~~L~D~~~~g-~g~~~~~~~~~~~------~~~--- 145 (200)
T d1v5xa_ 83 GEE----PP-EWAEAVG-RFYPVIKAFPLEGPAR-PEWADYPAQALLLDGKRPG-SGEAYPRAWAKPL------LAT--- 145 (200)
T ss_dssp SCC----CH-HHHHHHT-TTSCEEEEEECSSSCC-GGGGGSSCSEEEEECSSTT-SCCCCCGGGGHHH------HHT---
T ss_pred ccC----CH-HHHHHHh-hccccceeeccCchhh-HHHhhcchhheeecccccC-cccccchHHHhhh------hhc---
Confidence 863 22 2344443 3455655665543321 1222235788887655555 3444432211111 111
Q ss_pred CCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC---CCHH
Q 023494 226 NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA---KDYA 264 (281)
Q Consensus 226 ~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a---~dp~ 264 (281)
..++.+.||||++|+.++++.++.++=+-|.+=++ .|+.
T Consensus 146 ~~~~~LAGGl~~~Nv~~~~~~~p~gvDvsSGvE~~~G~KD~~ 187 (200)
T d1v5xa_ 146 GRRVILAGGIAPENLEEVLALRPYALDLASGVEEAPGVKSAE 187 (200)
T ss_dssp TSCEEECSSCCSTTHHHHHHHCCSEEEESGGGEEETTEECHH
T ss_pred cCceEecCCCCHHHHHHHHhcCCCEEEEcCceECCCCccCHH
Confidence 23677999999999999999999999888888432 4665
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=97.01 E-value=0.003 Score=57.06 Aligned_cols=142 Identities=18% Similarity=0.256 Sum_probs=86.9
Q ss_pred CeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHH-cCCcE-EEEECCCCCHHHHHHhhc-cCCEEEE
Q 023494 117 PLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD-LGAKA-GVVLNPATSLSAIECVLD-VVDLVLI 193 (281)
Q Consensus 117 ~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~-~G~k~-Glai~p~t~ie~~~~~l~-~vD~Ilv 193 (281)
....-....+..+.++.+.++|+|++.+-.......+..+.++.+++ ..-.. -++=|..|+ +..+.+++ .+|.|-+
T Consensus 101 ~~~~~~~~~~~~~~~~~L~~ag~d~i~IDvAhG~~~~v~~~i~~ir~~~~~~~~IiAGNVaT~-e~~~~L~~aGaD~vkV 179 (362)
T d1pvna1 101 LVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKITIGWIREKYGDKVKVGAGNIVDG-EGFRYLADAGADFIKI 179 (362)
T ss_dssp CCEEEECSSSHHHHHHHHHHHTCSEEEECCSCCCBHHHHHHHHHHHHHHGGGSCEEEEEECSH-HHHHHHHHHTCSEEEE
T ss_pred ccccccchhhhHHHHHHHhhcCceEEeechhccchhHHHHHHHHHHHhhccceeeecccccCH-HHHHHHHHhCCcEEEe
Confidence 33443444555567888899999999998664334456677777754 32222 233354454 34555555 4999876
Q ss_pred EeecCCC-------C--CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 194 MSVNPGF-------G--GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 194 msV~pG~-------~--GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
.+=||- . |-+......+--...+++..+.+.+++|..||||+ ...+.+.+.+|||.+-+|+.+-+.
T Consensus 180 -GIG~Gs~CTTr~~tGvG~Pq~sAv~e~a~~~~~~~~~~~~~v~iiaDGGi~~~gdi~KAla~GAd~VM~G~~lAg~ 255 (362)
T d1pvna1 180 -GIGGGSICITREQKGIGRGQATAVIDVVAERNKYFEETGIYIPVCSDGGIVYDYHMTLALAMGADFIMLGRYFARF 255 (362)
T ss_dssp -CSSCSTTBCHHHHTCBCCCHHHHHHHHHHHHHHHHHHHSEECCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTB
T ss_pred -cccccccccchhhhccCCchHHHHHHHHHHHHHhhhhcccCCceeeccccCcccceeEEEEEeccceeehhhhhcc
Confidence 333432 1 11211222222222233333345568899999999 789999999999999999887653
|
| >d1ep3a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Lactococcus lactis, isozyme B [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Lactococcus lactis, isozyme B [TaxId: 1358]
Probab=96.99 E-value=0.002 Score=55.91 Aligned_cols=144 Identities=19% Similarity=0.218 Sum_probs=92.0
Q ss_pred CCCCeeEEEEecChhhHHHHHH----HcCCCEEEEcccccc-----------cccHHHHHHHHHHc-CCcEEEEECCCCC
Q 023494 114 TDLPLDVHLMIVEPEQRVPDFI----KAGADIVSVHCEQSS-----------TIHLHRTLNQIKDL-GAKAGVVLNPATS 177 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~~~----~aGAd~Itvh~Ea~~-----------~~~i~~~l~~ik~~-G~k~Glai~p~t~ 177 (281)
++.|+.+.++..++..+.+.+. .+|+|.|-+..-+.. .+...++++..++. .+.+.+-+.|...
T Consensus 97 ~~~pii~si~~~~~~~~~~~~~~~~~~~g~d~ielN~~cP~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~vkl~~~~~ 176 (311)
T d1ep3a_ 97 PELPIIANVAGSEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGTDPEVAAALVKACKAVSKVPLYVKLSPNVT 176 (311)
T ss_dssp TTSCEEEEECCSSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGGCHHHHHHHHHHHHHHCSSCEEEEECSCSS
T ss_pred CCCcccccccchhhhHHHHHHHHHhhcccccccccccCCCcccccccccccCHHHHHHHHHHHHhccCCCeeeeeccccc
Confidence 6789999999888887765442 258888877654320 11244556666655 4566676776642
Q ss_pred -HHHHHHhhc--cCCEEEEEeec------------------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 178 -LSAIECVLD--VVDLVLIMSVN------------------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 178 -ie~~~~~l~--~vD~IlvmsV~------------------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
...+...+. .+|.+.+.... .|..|....|..++.++++++. .+++|...|||.
T Consensus 177 ~~~~~a~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~g~sG~~i~~~~l~~i~~i~~~-----~~ipIig~GGI~ 251 (311)
T d1ep3a_ 177 DIVPIAKAVEAAGADGLTMINTLMGVRFDLKTRQPILANITGGLSGPAIKPVALKLIHQVAQD-----VDIPIIGMGGVA 251 (311)
T ss_dssp CSHHHHHHHHHTTCSEEEECCCEEECCBCTTTCSBSSTTSCEEEESGGGHHHHHHHHHHHHTT-----CSSCEEECSSCC
T ss_pred chHHHHHHHHHhhhheeEEEeeccccccccccccccccccCCCCCCCcccchhHHHHHHHhhh-----cceeEEEeCCcC
Confidence 223333332 36666542111 1112334446667777776643 357898999998
Q ss_pred -hhcHHHHHHcCCcEEEEcccccCCCC
Q 023494 237 -PKNAYKVIEAGANALVAGSAVFGAKD 262 (281)
Q Consensus 237 -~e~i~~~~~aGAD~~VvGSaIf~a~d 262 (281)
.+++.+++.+|||.+=+||+++..+.
T Consensus 252 s~~Da~~~i~~GAd~V~ig~~~~~~P~ 278 (311)
T d1ep3a_ 252 NAQDVLEMYMAGASAVAVGTANFADPF 278 (311)
T ss_dssp SHHHHHHHHHHTCSEEEECTHHHHCTT
T ss_pred CHHHHHHHHHcCCCEEEecHHHHcCCh
Confidence 77888888999999999999986543
|
| >d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Archaeal fructose 1,6-bisphosphate aldolase species: Archaeon Thermoproteus tenax [TaxId: 2271]
Probab=96.97 E-value=0.0054 Score=52.38 Aligned_cols=175 Identities=18% Similarity=0.120 Sum_probs=104.9
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecCh------h----hHHHHHHHcCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEP------E----QRVPDFIKAGA 139 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp------~----~~i~~~~~aGA 139 (281)
.+.+..++.+...|+|-+-. .+.+++.+-. .+.++.+++-.... . .-++.+.+.||
T Consensus 39 ~d~~~~~~~~~~~g~Da~~~-------------~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~sve~a~rlGa 104 (251)
T d1ojxa_ 39 ADPEYILRLARDAGFDGVVF-------------QRGIAEKYYD-GSVPLILKLNGKTTLYNGEPVSVANCSVEEAVSLGA 104 (251)
T ss_dssp GCHHHHHHHHHHHTCSEEEE-------------CHHHHHHHCC-SSSCEEEECEECCTTCCSSCCCEESSCHHHHHHTTC
T ss_pred cCHHHHHHHHHhcCCChhhc-------------chHHHHHhcc-cccCeeEEEecCcccccccchhhhccCHHHHHhchh
Confidence 35566677777888886532 1234444432 23444444433221 1 12788899999
Q ss_pred CEEEEcccccc------cccHHHHHHHHHHcCCcEEEEECCC-------CCHHHHHHhhc-----cCCEEEEEeecCCCC
Q 023494 140 DIVSVHCEQSS------TIHLHRTLNQIKDLGAKAGVVLNPA-------TSLSAIECVLD-----VVDLVLIMSVNPGFG 201 (281)
Q Consensus 140 d~Itvh~Ea~~------~~~i~~~l~~ik~~G~k~Glai~p~-------t~ie~~~~~l~-----~vD~IlvmsV~pG~~ 201 (281)
|.|.++.--.+ .+.+.++.++++++|+-+.+..-|- +..+.+..... .+|+|=+ -.||-
T Consensus 105 daV~~~v~~g~~~e~~~l~~~~~v~~e~~~~glP~v~e~~p~g~~~~~~~~~~~v~~aaria~ElGaDivK~--~~p~~- 181 (251)
T d1ojxa_ 105 SAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNETAPEIVAYAARIALELGADAMKI--KYTGD- 181 (251)
T ss_dssp SEEEEEECTTSTTHHHHHHHHHHHHHHHHHHTCCEEEEECCCSTTCCCTTCHHHHHHHHHHHHHHTCSEEEE--CCCSS-
T ss_pred ceEEEEEeCCCCchHHHHHHHHHHHHHHHHcCCeEEEEEeecCCccccCCCHHHHHHHHHHHHHhCCCEEEe--cCCCc-
Confidence 99998854221 2346788889999999988776552 23343333221 2687743 22321
Q ss_pred CCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh---h----cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHh
Q 023494 202 GQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP---K----NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTS 273 (281)
Q Consensus 202 GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~---e----~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~ 273 (281)
.+.+ .++..... ..++.+-||-.. + .++...++||..+++|+.||+++||.+.++.++..
T Consensus 182 -----~~~~---~~~v~~a~----~~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~~GRni~q~~~p~~~~~al~~i 248 (251)
T d1ojxa_ 182 -----PKTF---SWAVKVAG----KVPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIAVGRNVWQRRDALKFARALAEL 248 (251)
T ss_dssp -----HHHH---HHHHHHTT----TSCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEEESHHHHTSTTHHHHHHHHHHH
T ss_pred -----HHHH---HHHHHhcC----CCceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEeechhhhCcCcHHHHHHHHHHH
Confidence 1222 22222211 246666666542 2 34456788999999999999999999999888764
|
| >d1ykwa1 c.1.14.1 (A:146-428) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Chlorobium tepidum [TaxId: 1097]
Probab=96.84 E-value=0.006 Score=53.23 Aligned_cols=201 Identities=17% Similarity=0.189 Sum_probs=113.3
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+..+..|+-.. -+.|++.+.+|-.+..+=.......+|.| ..|...+.+..+.+.+.|.+.+++|++
T Consensus 50 D~IKDDE~l~~~~~~p-~~eRv~~~~~a~~~a~~~TG~~~lya~Ni-T~~~~em~~ra~~~~~~G~~~~mv~~~------ 121 (283)
T d1ykwa1 50 DIAKDDEMLADVTWSS-IEERAAHLGKARRKAEAETGEPKIYLANI-TDEVDSLMEKHDVAVRNGANALLINAL------ 121 (283)
T ss_dssp SEEECCTTCSSBTTBC-HHHHHHHHHHHHHHHHHHHSSCCEEEEEC-CCCGGGHHHHHHHHHHHTCCEEEEEHH------
T ss_pred ceecCCccCCCCCCcc-HHHHHHHHHHHHHHHHHHhCCeeEEeeec-CCCHHHHHHHHHHHHHhCCCEEEEecc------
Confidence 4444455554444333 34456666665544444333456788999 589999999999999999999998743
Q ss_pred cccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCH
Q 023494 99 NITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL 178 (281)
Q Consensus 99 n~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i 178 (281)
..|...++.+++.++.++.+|--.. -.+.......+++ +
T Consensus 122 --~~G~~a~~~l~~~~~lpi~~H~a~~------g~~~r~~~~Gis~--------------------------------~- 160 (283)
T d1ykwa1 122 --PVGLSAVRMLSNYTQVPLIGHFPFI------ASFSRMEKYGIHS--------------------------------K- 160 (283)
T ss_dssp --HHCHHHHHHHHHHCSSCEEEECTTT------HHHHCSTTSEECH--------------------------------H-
T ss_pred --cchHHHHHHHHhhcCCCeEeeeccc------eeeccCcCCCccH--------------------------------H-
Confidence 4578899999988888888874110 0011111111110 0
Q ss_pred HHHHHh--hccCCEEEEEeecCCCCCC-ccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHH-HcC-CcEEE
Q 023494 179 SAIECV--LDVVDLVLIMSVNPGFGGQ-SFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI-EAG-ANALV 252 (281)
Q Consensus 179 e~~~~~--l~~vD~IlvmsV~pG~~GQ-~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~-~aG-AD~~V 252 (281)
.+.++ +..+|.|.+. +++|. .+.++. ++....+++-...-..-+++ ..||+++.+++.+. ..| .|+++
T Consensus 161 -vl~KL~RLaGaD~ih~~----~~gg~~~~~~e~~~~~~~~~~~~~~~~k~~~Pv-~sGG~~~~~vp~~~~~~G~~Dvil 234 (283)
T d1ykwa1 161 -VMTKLQRLAGLDAVIMP----GFGDRVMTPEEEVLENVIECTKPMGRIKPCLPV-PGGSDSALTLQTVYEKVGNVDFGF 234 (283)
T ss_dssp -HHHHHHHHHTCSEEEEE----CSSTTSSSCHHHHHHHHHHHHSCCTTCCCCEEE-EECSBCTTTHHHHHHHHCSSCSEE
T ss_pred -HHHHHHHHcCCCceeec----CCcccccCchHHHHHHHHHhcCcccccCCceee-ccCCcchhhhHHHHHhcCCceEEE
Confidence 01111 1234555432 33331 111111 11111111100011122444 79999999998775 578 57766
Q ss_pred -EcccccCCCC-HHHHHHHHHHhc
Q 023494 253 -AGSAVFGAKD-YAEAIKGIKTSK 274 (281)
Q Consensus 253 -vGSaIf~a~d-p~~~~~~l~~~~ 274 (281)
+|.+|+..+| +++-++.+|+.+
T Consensus 235 ~aGGGi~gHP~G~~aGa~A~rqA~ 258 (283)
T d1ykwa1 235 VPGRGVFGHPMGPKAGAKSIRQAW 258 (283)
T ss_dssp CBSSSSSSCTTCHHHHHHHHHHHH
T ss_pred ecCcccccCCCchHHHHHHHHHHH
Confidence 6899999865 777777777643
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=96.81 E-value=0.008 Score=53.36 Aligned_cols=129 Identities=16% Similarity=0.196 Sum_probs=80.2
Q ss_pred HHHcCCCEEEEccccc--------------------ccc----cHHHHHHHHHHc-CCcEEEEECCCC------CHHHHH
Q 023494 134 FIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GAKAGVVLNPAT------SLSAIE 182 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------------------~~~----~i~~~l~~ik~~-G~k~Glai~p~t------~ie~~~ 182 (281)
+.++|.|+|-+|.-.. +.+ -+.++++.+|+. +..+++-+++.. ..+...
T Consensus 152 a~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~~~~~~ 231 (337)
T d1z41a1 152 AKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLDIADHI 231 (337)
T ss_dssp HHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCCHHHHH
T ss_pred HHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccchhhhH
Confidence 4578999999996311 001 156788888875 567777666542 222222
Q ss_pred Hh---hc--cCCEEEEEeecCCCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 183 CV---LD--VVDLVLIMSVNPGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 183 ~~---l~--~vD~IlvmsV~pG~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.+ +. .+|++.+...........+.|.. .+-.+.+|+.. +.++.+-|||+ ++.+.++++.| +|.+.+|
T Consensus 232 ~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~-----~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~g 306 (337)
T d1z41a1 232 GFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQA-----DMATGAVGMITDGSMAEEILQNGRADLIFIG 306 (337)
T ss_dssp HHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHH-----CCEEEECSSCCSHHHHHHHHHTTSCSEEEEC
T ss_pred HHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhc-----CceEEEeCCcCCHHHHHHHHHCCCcceehhh
Confidence 22 22 27887764332211222222222 23334455544 36888899996 99999999999 9999999
Q ss_pred ccccCCCCHHHHH
Q 023494 255 SAVFGAKDYAEAI 267 (281)
Q Consensus 255 SaIf~a~dp~~~~ 267 (281)
+++...+|....+
T Consensus 307 R~~iadPd~~~k~ 319 (337)
T d1z41a1 307 RELLRDPFFARTA 319 (337)
T ss_dssp HHHHHCTTHHHHH
T ss_pred HHHHhCchHHHHH
Confidence 9999877765444
|
| >d1thfd_ c.1.2.1 (D:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermotoga maritima [TaxId: 2336]
Probab=96.72 E-value=0.0011 Score=56.84 Aligned_cols=78 Identities=12% Similarity=0.242 Sum_probs=55.3
Q ss_pred CCHHHHHHhhcc-CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.|.+. +|.+.+........+. +.-++-++++.+. ...+++++|||+ .+.+..+..+|||-+|+
T Consensus 31 dP~~~a~~~~~~g~dei~ivDld~~~~~~---~~~~~~i~~i~~~-----~~~pi~vgGGIr~~e~i~~~l~~Ga~kvii 102 (253)
T d1thfd_ 31 DPVELGKFYSEIGIDELVFLDITASVEKR---KTMLELVEKVAEQ-----IDIPFTVGGGIHDFETASELILRGADKVSI 102 (253)
T ss_dssp CHHHHHHHHHHTTCCEEEEEESSCSSSHH---HHHHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccccCc---ccHHHHHHHHHhc-----cCccceeecccccchhhhhHHhcCCCEEEE
Confidence 467777776654 8888887665443331 2233444444332 357899999999 77999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
||..++..
T Consensus 103 gs~~~~n~ 110 (253)
T d1thfd_ 103 NTAAVENP 110 (253)
T ss_dssp SHHHHHCT
T ss_pred ChHHhhCh
Confidence 99998644
|
| >d1ka9f_ c.1.2.1 (F:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Thermus thermophilus [TaxId: 274]
Probab=96.71 E-value=0.0011 Score=56.75 Aligned_cols=79 Identities=16% Similarity=0.229 Sum_probs=53.4
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.|.+ .+|.+.+.-......+.. .-.+-|+++.+. ...+++++|||+ .+++..+.++||+-+|+
T Consensus 31 dP~~~a~~~~~~g~dei~iiDl~~~~~~~~---~~~~~i~~i~~~-----~~~pi~vgGGIrs~e~~~~ll~~Ga~kVii 102 (251)
T d1ka9f_ 31 DPVEAARAYDEAGADELVFLDISATHEERA---ILLDVVARVAER-----VFIPLTVGGGVRSLEDARKLLLSGADKVSV 102 (251)
T ss_dssp CHHHHHHHHHHHTCSCEEEEECCSSTTCHH---HHHHHHHHHHTT-----CCSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEecccccccch---hHHHHHHHHHhc-----cCcchheeccccCHHHHHHHHHcCCCEEEE
Confidence 35555555544 377777765554443322 223334443332 357899999999 78999999999999999
Q ss_pred cccccCCCC
Q 023494 254 GSAVFGAKD 262 (281)
Q Consensus 254 GSaIf~a~d 262 (281)
||..++..+
T Consensus 103 ~s~~~~n~~ 111 (251)
T d1ka9f_ 103 NSAAVRRPE 111 (251)
T ss_dssp CHHHHHCTH
T ss_pred CchhhhCHH
Confidence 999887553
|
| >d1h5ya_ c.1.2.1 (A:) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.66 E-value=0.00076 Score=57.89 Aligned_cols=78 Identities=15% Similarity=0.224 Sum_probs=55.7
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++.++.|.+ .+|.+.+.-.+....+. +.-++-|+++.+.. ..+++++|||+ .+.+..+..+|||-+++
T Consensus 33 dP~~~a~~~~~~gadei~ivDl~~~~~~~---~~~~~~i~~i~~~~-----~~pi~~gGGIr~~e~~~~ll~~G~~kVii 104 (252)
T d1h5ya_ 33 DPVEMAVRYEEEGADEIAILDITAAPEGR---ATFIDSVKRVAEAV-----SIPVLVGGGVRSLEDATTLFRAGADKVSV 104 (252)
T ss_dssp CHHHHHHHHHHTTCSCEEEEECCCCTTTH---HHHHHHHHHHHHHC-----SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred CHHHHHHHHHHCCCCEEEEEecccccccc---ccHHHHHHHHHhhc-----CCcceeecccchhhhhhhHhhcCCcEEEe
Confidence 46776666654 38888776665443332 22334455554432 47899999997 89999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
||..|...
T Consensus 105 ~s~~~~~~ 112 (252)
T d1h5ya_ 105 NTAAVRNP 112 (252)
T ss_dssp SHHHHHCT
T ss_pred cccccCCc
Confidence 99988644
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.59 E-value=0.018 Score=51.83 Aligned_cols=126 Identities=21% Similarity=0.357 Sum_probs=78.9
Q ss_pred hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCC-----C
Q 023494 129 QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGG-----Q 203 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~G-----Q 203 (281)
+..+.+.++|+|.+.+........+....++.+|+.=-..-++=|..|+-- ... +..+|.|-+ .+-||-.- .
T Consensus 119 ~r~~~l~~aGvd~ivID~A~Gh~~~~i~~lK~ir~~~~~~vIaGNVaT~e~-~~~-l~gaD~VkV-GIG~Gs~CTTr~~t 195 (368)
T d2cu0a1 119 KRAIELDKAGVDVIVVDTAHAHNLKAIKSMKEMRQKVDADFIVGNIANPKA-VDD-LTFADAVKV-GIGPGSICTTRIVA 195 (368)
T ss_dssp HHHHHHHHTTCSEEEEECSCCCCHHHHHHHHHHHHTCCSEEEEEEECCHHH-HTT-CTTSSEEEE-CSSCSTTBCHHHHT
T ss_pred HHHHHHHHcCCCEEEecCcccchhhhhhhhhhhhhhcccceeeccccCHHH-HHh-hhcCcceee-cccCcccccchhhc
Confidence 346678899999999887654344555667777654223344556555542 222 335898875 44444210 0
Q ss_pred cc-chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccCC
Q 023494 204 SF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 204 ~f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
-+ .|+ +.-|.+..+.... ++.+|..||||+ ...+.+.+.+|||.+.+||.+-+.
T Consensus 196 GvG~Pq-~sAi~e~~~~~~~--~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~ 251 (368)
T d2cu0a1 196 GVGVPQ-ITAVAMVADRAQE--YGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT 251 (368)
T ss_dssp CCCCCH-HHHHHHHHHHHHH--HTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ccccch-HHHHHHHHHHHhc--cCCeeEecCCCCcCChhheeeeeccceeeccchhccc
Confidence 01 122 3333444433333 247899999999 669999999999999999998764
|
| >d1jvna1 c.1.2.1 (A:230-552) Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF {Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Cyclase subunit (or domain) of imidazoleglycerolphosphate synthase HisF species: Baker's yeast (Saccharomyces cerevisiae), His7 [TaxId: 4932]
Probab=96.40 E-value=0.0018 Score=57.77 Aligned_cols=79 Identities=13% Similarity=0.081 Sum_probs=54.8
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-h-----------cHHH
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-K-----------NAYK 242 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-e-----------~i~~ 242 (281)
.|++.++.|.+ .+|.+.++-+..-..+..-....++.|+++.+. ..+||++.|||+- + .++.
T Consensus 49 dP~~~a~~~~~~gaDeL~ivDidas~~~~~~~~~~~~~I~~i~~~-----~~vPi~vGGGIrsi~di~~~~~~~~e~A~~ 123 (323)
T d1jvna1 49 KPVQLAQKYYQQGADEVTFLNITSFRDCPLKDTPMLEVLKQAAKT-----VFVPLTVGGGIKDIVDVDGTKIPALEVASL 123 (323)
T ss_dssp HHHHHHHHHHHTTCSEEEEEEEC---CCCGGGCHHHHHHHHHTTT-----CCSCEEEESSCSCEECTTCCEECHHHHHHH
T ss_pred CHHHHHHHHHHCCCCEEEEEECcCCCCCcCCCchHHHHHHhhccc-----cceeEEEecCcccHHHhhhccchhhHHHHH
Confidence 56777777755 499999887764334433333445556555432 3589999999994 3 4688
Q ss_pred HHHcCCcEEEEcccccC
Q 023494 243 VIEAGANALVAGSAVFG 259 (281)
Q Consensus 243 ~~~aGAD~~VvGSaIf~ 259 (281)
++++|||-+++||+.+.
T Consensus 124 ll~~GadKVvI~T~ai~ 140 (323)
T d1jvna1 124 YFRSGADKVSIGTDAVY 140 (323)
T ss_dssp HHHHTCSEEEECHHHHH
T ss_pred HHHcCCCeEEechHHhh
Confidence 99999999999998763
|
| >d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Type I 3-dehydroquinate dehydratase species: Salmonella typhi [TaxId: 90370]
Probab=96.38 E-value=0.012 Score=50.26 Aligned_cols=137 Identities=12% Similarity=0.120 Sum_probs=91.5
Q ss_pred CCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeC-cccccccCCHHHHHHcCcC-CCCCeeEEEEec-----
Q 023494 53 FSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNITIGPLVVDALRPV-TDLPLDVHLMIV----- 125 (281)
Q Consensus 53 ~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~----- 125 (281)
+-.++.+|+.+|..-+..++.++++.+...|+|.+++.+ |- .-.++...=.+.++.+|+. .++|+.+++-..
T Consensus 11 ~g~g~pkIcv~l~~~~~~~~~~~~~~~~~~~aD~vE~Rl-D~l~~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~ 89 (252)
T d1gqna_ 11 IGEGMPKIIVSLMGRDINSVKAEALAYREATFDILEWRV-DHFMDIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGE 89 (252)
T ss_dssp ETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEG-GGCSCTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCS
T ss_pred ecCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEEE-ccccccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCC
Confidence 345677899999999998888888888888999999974 31 0011111113455666664 458898877764
Q ss_pred ---ChhhHHH---HHHHcC-CCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC--CCCC-HHHHHHhhc-----cCCE
Q 023494 126 ---EPEQRVP---DFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN--PATS-LSAIECVLD-----VVDL 190 (281)
Q Consensus 126 ---dp~~~i~---~~~~aG-Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~--p~t~-ie~~~~~l~-----~vD~ 190 (281)
+...|++ .+.++| +|+|-+-... ....+.+.++.+++.|.++-++.+ ..|| .+.+.+++. .+|+
T Consensus 90 ~~~~~~~~~~ll~~~~~~~~~d~iDiEl~~-~~~~~~~li~~a~~~~~~vI~S~Hdf~~TP~~~~l~~~~~~m~~~gaDi 168 (252)
T d1gqna_ 90 QTITTQHYLTLNRAAIDSGLVDMIDLELFT-GDADVKATVDYAHAHNVYVVMSNHDFHQTPSAEEMVSRLRKMQALGADI 168 (252)
T ss_dssp BCCCHHHHHHHHHHHHHHSCCSEEEEEGGG-CHHHHHHHHHHHHHTTCEEEEEEEESSCCCCHHHHHHHHHHHHHTTCSE
T ss_pred CCCCHHHHHHHHHHHHHcCCCceEeccccc-cHHHHHHHHHHhhcCCCeEEEEecCCCCCCCHHHHHHHHHHHHHhCCCe
Confidence 2334544 456678 8999988764 234567788888999999999865 4454 344544443 2676
Q ss_pred E
Q 023494 191 V 191 (281)
Q Consensus 191 I 191 (281)
+
T Consensus 169 v 169 (252)
T d1gqna_ 169 P 169 (252)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain species: Pseudomonas sp. [TaxId: 306]
Probab=96.13 E-value=0.11 Score=43.82 Aligned_cols=175 Identities=12% Similarity=0.121 Sum_probs=103.3
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCccc--c-----c---ccCCHHHHHHcCcCCC-CCeeEEEEecCh-hhHHHHHHHcC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFV--P-----N---ITIGPLVVDALRPVTD-LPLDVHLMIVEP-EQRVPDFIKAG 138 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fv--p-----n---~~~G~~~I~~ir~~t~-~~idaHLmv~dp-~~~i~~~~~aG 138 (281)
.-.+.++.|.+.|++.|++ |.+. + . .....+.++.+++..+ ..+-+.+..... .+.+..+.+.|
T Consensus 30 ~k~~i~~~L~~~Gv~~IEv----G~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 105 (289)
T d1nvma2 30 DVRAIARALDKAKVDSIEV----AHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAG 105 (289)
T ss_dssp HHHHHHHHHHHHTCSEEEC----SCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCCEEEe----CCCcCcccccchhhhccchHHHHHHHHHHhcchhHHHHHHhhhhhhHHHHHHHHHhc
Confidence 3345667888999999887 3211 1 0 0112344555544322 223222221121 23466778889
Q ss_pred CCEEEEcccccccccHHHHHHHHHHcCCcEEEEE--CCCCCHHHHHHhhc-----cCCEEEEEeecCCCCCCccchhHHH
Q 023494 139 ADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVL--NPATSLSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVK 211 (281)
Q Consensus 139 Ad~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai--~p~t~ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~~~~l~ 211 (281)
++.+.+...........+.++.+++.|.++.+-+ ...++.+.+.++.+ .+|.|.+. -..|.....++.+
T Consensus 106 ~~~~r~~~~~~~~~~~~~~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~I~l~----DT~G~~~P~~v~~ 181 (289)
T d1nvma2 106 ARVVRVATHCTEADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESYGATCIYMA----DSGGAMSMNDIRD 181 (289)
T ss_dssp CCEEEEEEETTCGGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHHTCSEEEEE----CTTCCCCHHHHHH
T ss_pred ccceEEEeehhhhhhHhHHHHHHHHhCCceeeEeeeccccCchhhhHHHHhhccccceeeeec----chhhcccchhHHH
Confidence 9988887654335567889999999998876543 34456655555443 27887663 2234333334455
Q ss_pred HHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEEEEccccc
Q 023494 212 KISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 212 kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
.++.+++.+. .+.+|.+ |=|....|.-..+++|||.| =+++.
T Consensus 182 ~v~~l~~~~~---~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~i--d~si~ 227 (289)
T d1nvma2 182 RMRAFKAVLK---PETQVGMHAHHNLSLGVANSIVAVEEGCDRV--DASLA 227 (289)
T ss_dssp HHHHHHHHSC---TTSEEEEECBCTTSCHHHHHHHHHHTTCCEE--EEBGG
T ss_pred HHHHHHHHhc---ccccceeeechHHHHHHHHHHHHHHhCCcEe--ecccc
Confidence 5666665542 2456776 55677778889999999975 45554
|
| >d1icpa_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Tomato (Lycopersicon esculentum), OPR1 [TaxId: 4081]
Probab=96.10 E-value=0.013 Score=52.42 Aligned_cols=129 Identities=16% Similarity=0.232 Sum_probs=76.4
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-C-CcEEEEECCCCCH-------HH
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-G-AKAGVVLNPATSL-------SA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G-~k~Glai~p~t~i-------e~ 180 (281)
+.++|.|+|-+|.-.. + .+ -+.++++++|+. | -.+++-+++.+.. +.
T Consensus 167 A~~AGfDgVeIH~ahGyLl~QFlSp~tN~RtDeYGGsleNR~Rf~~Eii~aIr~~~g~~~i~~r~s~~~~~~~~g~~~~~ 246 (364)
T d1icpa_ 167 AIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTNPT 246 (364)
T ss_dssp HHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSCHH
T ss_pred HHHhCCCeEEEeccCcchhhceehhhcCCcCccccchhhhhhhHHHHHhhhhhcccCCcceeEEecccccccCCcCcchH
Confidence 4678999999996321 0 00 045788888875 4 2577777764331 11
Q ss_pred -----HHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEEEEc
Q 023494 181 -----IECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 181 -----~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~VvG 254 (281)
....+...|+..+....|......+.....+....+++.. ..++.+.||++++.+.+++..| +|.+-+|
T Consensus 247 ~~~l~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-----~~~vi~~g~~~~~~ae~~l~~g~aD~V~~g 321 (364)
T d1icpa_ 247 ALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAY-----KGTFIVAGGYDREDGNRALIEDRADLVAYG 321 (364)
T ss_dssp HHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHC-----CSCEEEESSCCHHHHHHHHHTTSCSEEEES
T ss_pred HHHHHHHHHhhccceeeeeeecCcccccccccccHHHHHHHHHhc-----CCCEEEECCCCHHHHHHHHHcCCCceehhH
Confidence 1112334565555445555433222222222233344432 3578899999999998877765 9999999
Q ss_pred ccccCCCCHHHHH
Q 023494 255 SAVFGAKDYAEAI 267 (281)
Q Consensus 255 SaIf~a~dp~~~~ 267 (281)
+++...+|....+
T Consensus 322 R~~iadPd~~~k~ 334 (364)
T d1icpa_ 322 RLFISNPDLPKRF 334 (364)
T ss_dssp HHHHHCTTHHHHH
T ss_pred HHHHHCccHHHHH
Confidence 9998777765433
|
| >d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Pentaerythritol tetranirate reductase species: Enterobacter cloacae [TaxId: 550]
Probab=96.09 E-value=0.057 Score=48.10 Aligned_cols=125 Identities=18% Similarity=0.283 Sum_probs=78.3
Q ss_pred HHHcCCCEEEEccccc--------------------ccc----cHHHHHHHHHHc-CC-cEEEEECCC----------CC
Q 023494 134 FIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-GA-KAGVVLNPA----------TS 177 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------------------~~~----~i~~~l~~ik~~-G~-k~Glai~p~----------t~ 177 (281)
+.++|.|+|-+|+... +.+ -+.++++++|+. |- .+|+-+++. ..
T Consensus 169 A~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg~~ 248 (363)
T d1vyra_ 169 AREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGPNE 248 (363)
T ss_dssp HHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCTTH
T ss_pred HHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhcccc
Confidence 4678999999996421 011 166888888865 32 477777652 12
Q ss_pred HHHHHHhhc-----cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEE
Q 023494 178 LSAIECVLD-----VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 178 ie~~~~~l~-----~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~ 251 (281)
.++..++++ .+|++-+-.... ..+.++.....+++ |+.. +.++.+.|+++++.+.++++.| +|.+
T Consensus 249 ~~e~~~~~~~l~~~gvd~i~vs~~~~-~~~~~~~~~~~~~~---~~~~-----~~~vi~~G~~t~~~ae~~l~~G~~DlV 319 (363)
T d1vyra_ 249 EADALYLIEELAKRGIAYLHMSETDL-AGGKPYSEAFRQKV---RERF-----HGVIIGAGAYTAEKAEDLIGKGLIDAV 319 (363)
T ss_dssp HHHHHHHHHHHHHTTCSEEEEECCBT-TBCCCCCHHHHHHH---HHHC-----CSEEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred hHHHHHHHHHHHhcCCeeeecccCCc-cCCccccHHHHHHH---HHhc-----CceEEecCCCCHHHHHHHHHCCCccee
Confidence 333333332 279987642221 12333443333322 3222 3578788999999999999999 8999
Q ss_pred EEcccccCCCCHHHHH
Q 023494 252 VAGSAVFGAKDYAEAI 267 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~ 267 (281)
-+|+++...+|....+
T Consensus 320 ~~gR~liadP~~~~K~ 335 (363)
T d1vyra_ 320 AFGRDYIANPDLVARL 335 (363)
T ss_dssp EESHHHHHCTTHHHHH
T ss_pred hhhHHHHHCccHHHHH
Confidence 9999999777765433
|
| >d1vzwa1 c.1.2.1 (A:2-240) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Streptomyces coelicolor [TaxId: 1902]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Streptomyces coelicolor [TaxId: 1902]
Probab=96.05 E-value=0.0018 Score=54.86 Aligned_cols=77 Identities=14% Similarity=0.272 Sum_probs=53.5
Q ss_pred CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEE
Q 023494 176 TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVA 253 (281)
Q Consensus 176 t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~Vv 253 (281)
.|++..+.|.+ .+|.+.+.-.+.-. +..-.... ++++.+.. ..+++++|||+ .+.+..+.+.|||-+|+
T Consensus 32 dP~~~a~~~~~~ga~~l~i~DLd~~~-~~~~~~~~---i~~i~~~~-----~~pi~vGGGIrs~~~~~~ll~~Ga~kVvi 102 (239)
T d1vzwa1 32 SPLEAALAWQRSGAEWLHLVDLDAAF-GTGDNRAL---IAEVAQAM-----DIKVELSGGIRDDDTLAAALATGCTRVNL 102 (239)
T ss_dssp CHHHHHHHHHHTTCSEEEEEEHHHHH-TSCCCHHH---HHHHHHHC-----SSEEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CHHHHHHHHHHcCCCEEEEEeecccc-cccchHHH---HHHHHhhc-----CcceEeecccccchhhhhhhccccccchh
Confidence 57777777654 48888776554322 22222233 34444332 46999999999 88999999999999999
Q ss_pred cccccCCC
Q 023494 254 GSAVFGAK 261 (281)
Q Consensus 254 GSaIf~a~ 261 (281)
||..+..+
T Consensus 103 ~s~~~~~~ 110 (239)
T d1vzwa1 103 GTAALETP 110 (239)
T ss_dssp CHHHHHCH
T ss_pred hHHhhhcc
Confidence 99998654
|
| >d1qo2a_ c.1.2.1 (A:) Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Ribulose-phoshate binding barrel family: Histidine biosynthesis enzymes domain: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotite isomerase HisA species: Thermotoga maritima [TaxId: 2336]
Probab=95.91 E-value=0.0014 Score=55.55 Aligned_cols=83 Identities=14% Similarity=0.259 Sum_probs=54.4
Q ss_pred CCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEE
Q 023494 175 ATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALV 252 (281)
Q Consensus 175 ~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~V 252 (281)
..|++..+.|.+ .+|.+.+.-.+.-..|........++ +++. ..++++.|||+ .+++..+.+.|||.++
T Consensus 30 ~dP~~~a~~~~~~g~~~l~ivDLda~~~~~~~~~~~~~~---~~~~------~~pl~~gGGI~s~~~~~~~~~~Ga~kVv 100 (241)
T d1qo2a_ 30 KDPVELVEKLIEEGFTLIHVVDLSNAIENSGENLPVLEK---LSEF------AEHIQIGGGIRSLDYAEKLRKLGYRRQI 100 (241)
T ss_dssp SCHHHHHHHHHHTTCCCEEEEEHHHHHHCCCTTHHHHHH---GGGG------GGGEEEESSCCSHHHHHHHHHTTCCEEE
T ss_pred CCHHHHHHHHHHCCCCEEEEEecccccccCCcchhheeh---hccc------ccchhhhhhhhhhhhhhhccccccceEe
Confidence 457776666654 37777766554322233222222222 2221 25899999996 8999999999999999
Q ss_pred EcccccCCCCHHHH
Q 023494 253 AGSAVFGAKDYAEA 266 (281)
Q Consensus 253 vGSaIf~a~dp~~~ 266 (281)
+||++++.++..+.
T Consensus 101 i~s~~~~~~~~~~~ 114 (241)
T d1qo2a_ 101 VSSKVLEDPSFLKS 114 (241)
T ss_dssp ECHHHHHCTTHHHH
T ss_pred cCcccccCchhhhh
Confidence 99999876654443
|
| >d1p0ka_ c.1.4.1 (A:) Isopentenyl-diphosphate delta-isomerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Bacillus subtilis [TaxId: 1423]
Probab=95.90 E-value=0.12 Score=44.60 Aligned_cols=140 Identities=15% Similarity=0.075 Sum_probs=82.2
Q ss_pred CCCCeeEEEEecChhhHHH-HHHHcCCCEEEEccccc----------ccccHHHHHHHHHH-cCCcEEEE-ECCCCCHHH
Q 023494 114 TDLPLDVHLMIVEPEQRVP-DFIKAGADIVSVHCEQS----------STIHLHRTLNQIKD-LGAKAGVV-LNPATSLSA 180 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~-~~~~aGAd~Itvh~Ea~----------~~~~i~~~l~~ik~-~G~k~Gla-i~p~t~ie~ 180 (281)
+..+..+............ ...+.|++.+.+|.... ......+.++++++ .+.++.+- +......+.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~ai~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~vivk~v~~~~~~~~ 174 (329)
T d1p0ka_ 95 PNGLIFANLGSEATAAQAKEAVEMIGANALQIHLNVIQEIVMPEGDRSFSGALKRIEQICSRVSVPVIVKEVGFGMSKAS 174 (329)
T ss_dssp SSSCEEEEEETTCCHHHHHHHHHHTTCSEEEEEECTTTTC--------CTTHHHHHHHHHHHCSSCEEEEEESSCCCHHH
T ss_pred CcceEEEeeccchhHHHHHHHHHHcCCCEEEecccccchhhhccccccccchHHHHHHHHHHcCCCcEEEecCCcchHHH
Confidence 3455566666655554444 44567999998886431 01233456666665 45666653 333345666
Q ss_pred HHHhhc-cCCEEEEEeecCCCCCC---------------ccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHH
Q 023494 181 IECVLD-VVDLVLIMSVNPGFGGQ---------------SFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKV 243 (281)
Q Consensus 181 ~~~~l~-~vD~IlvmsV~pG~~GQ---------------~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~ 243 (281)
...+.+ .+|.|.+- .+.|.... .+-......+.+.+... .+++|.+||||. ...+-++
T Consensus 175 a~~~~~~GaD~i~v~-~~gG~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~~~~~~----~~v~viadGGIr~g~Dv~KA 249 (329)
T d1p0ka_ 175 AGKLYEAGAAAVDIG-GYGGTNFSKIENLRRQRQISFFNSWGISTAASLAEIRSEF----PASTMIASGGLQDALDVAKA 249 (329)
T ss_dssp HHHHHHHTCSEEEEE-C---------------CCGGGGTTCSCCHHHHHHHHHHHC----TTSEEEEESSCCSHHHHHHH
T ss_pred HHHHHhcCCCEEEEc-CCCCCCccccchhhcccCccchhHhHHHHHHHHHHHHhhc----CCceEEEcCCcccHHHHHHH
Confidence 666555 59999874 33332110 01111233333333332 258999999999 6788899
Q ss_pred HHcCCcEEEEccccc
Q 023494 244 IEAGANALVAGSAVF 258 (281)
Q Consensus 244 ~~aGAD~~VvGSaIf 258 (281)
+.+|||.+-+|+...
T Consensus 250 lalGAdaV~iGr~~l 264 (329)
T d1p0ka_ 250 IALGASCTGMAGHFL 264 (329)
T ss_dssp HHTTCSEEEECHHHH
T ss_pred HHcCCCchhccHHHH
Confidence 999999999998754
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.87 E-value=0.028 Score=49.49 Aligned_cols=127 Identities=11% Similarity=0.063 Sum_probs=75.6
Q ss_pred HHHcCCCEEEEccccc--------c------------cc----cHHHHHHHHHHc-C--CcEEEEECCCC------CHHH
Q 023494 134 FIKAGADIVSVHCEQS--------S------------TI----HLHRTLNQIKDL-G--AKAGVVLNPAT------SLSA 180 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------~------------~~----~i~~~l~~ik~~-G--~k~Glai~p~t------~ie~ 180 (281)
+.++|.|+|-+|.-.. + .+ -+.++++++|+. | .-+|+=+++.. ..++
T Consensus 150 a~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g~~~~~ 229 (330)
T d1ps9a1 150 AREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAE 229 (330)
T ss_dssp HHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHH
T ss_pred HHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCCCCHHH
Confidence 4578999999996421 0 00 156778888764 3 44666554332 3344
Q ss_pred HHHhhc-----cCCEEEEEeec-----CCCCCCccchhH-HHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-
Q 023494 181 IECVLD-----VVDLVLIMSVN-----PGFGGQSFIESQ-VKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG- 247 (281)
Q Consensus 181 ~~~~l~-----~vD~IlvmsV~-----pG~~GQ~f~~~~-l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG- 247 (281)
..++++ .+|++.+..-. |.. ..++.+.. ....+++|+ ..+.++.+.|||+ ++.+.++++.|
T Consensus 230 ~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~~~ik~-----~~~~pvi~~G~i~~~~~ae~~l~~g~ 303 (330)
T d1ps9a1 230 TVELAQAIEAAGATIINTGIGWHEARIPTI-ATPVPRGAFSWVTRKLKG-----HVSLPLVTTNRINDPQVADDILSRGD 303 (330)
T ss_dssp HHHHHHHHHHHTCSEEEEEECBTTCSSCSS-STTSCTTTTHHHHHHHTT-----SCSSCEEECSSCCSHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhhhhhhhccccccccccccc-CCCCcchhHHHHHHHHHh-----hCCceEEEeCCCCCHHHHHHHHHCCC
Confidence 444332 37887664321 111 11111111 122223332 2356888899996 99999999998
Q ss_pred CcEEEEcccccCCCCHHHH
Q 023494 248 ANALVAGSAVFGAKDYAEA 266 (281)
Q Consensus 248 AD~~VvGSaIf~a~dp~~~ 266 (281)
+|.+-+|+++...+|....
T Consensus 304 ~D~V~~gR~~iadP~~~~k 322 (330)
T d1ps9a1 304 ADMVSMARPFLADAELLSK 322 (330)
T ss_dssp CSEEEESTHHHHCTTHHHH
T ss_pred cchhHhhHHHHhChhHHHH
Confidence 9999999999877765443
|
| >d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Pyridoxine 5'-phosphate synthase family: Pyridoxine 5'-phosphate synthase domain: Pyridoxine 5'-phosphate synthase species: Escherichia coli [TaxId: 562]
Probab=95.60 E-value=0.11 Score=43.89 Aligned_cols=125 Identities=17% Similarity=0.236 Sum_probs=78.0
Q ss_pred ChhhHHHHHHHcCCCEEEEcccccccccHH-HHHHHHHH-cCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCC-
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQSSTIHLH-RTLNQIKD-LGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGF- 200 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~-~~l~~ik~-~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~- 200 (281)
||.++...+.++|||+||+|.-. +..|+. .-+..+++ .....-+-..|.... ..+.. .+|+|.+..-.|.-
T Consensus 25 d~~~~a~~~~~~GadgITvH~R~-DrRHI~~~Dv~~l~~~~~~~lNlE~a~~~e~---i~ia~~~kP~qvtLVPe~r~el 100 (242)
T d1m5wa_ 25 DPVQAAFIAEQAGADGITVHLRE-DRRHITDRDVRILRQTLDTRMNLEMAVTEEM---LAIAVETKPHFCCLVPEKRQEV 100 (242)
T ss_dssp CHHHHHHHHHTTTCSEEEEECCT-TCSSSCHHHHHHHHHHCSSEEEEEECSSHHH---HHHHHHHCCSEEEECCCCSSCS
T ss_pred CHHHHHHHHHHcCCCeEEeCCCC-CccccchHHHHHHHHHhhcccccccccchhH---HHHHHHhccceEEEeecCcccc
Confidence 56678888999999999999864 223321 23344444 456677777764333 22222 47999876544431
Q ss_pred ---CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccc
Q 023494 201 ---GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAV 257 (281)
Q Consensus 201 ---~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaI 257 (281)
+|-.+ ..-.++++.+.+.+.+.|..+-+=||. +++.+..+.+.|||.+=+=+.=
T Consensus 101 TTegGld~-~~~~~~L~~~i~~l~~~girvSLFiDp--d~~~i~~a~~lGad~IElhTG~ 157 (242)
T d1m5wa_ 101 TTEGGLDV-AGQRDKMRDACKRLADAGIQVSLFIDA--DEEQIKAAAEVGAPFIEIHTGC 157 (242)
T ss_dssp SCCSCCCS-GGGHHHHHHHHHHHHHTTCEEEEEECS--CHHHHHHHHHTTCSEEEEECHH
T ss_pred CcCCceee-hhhHHHHHHHHHHHHhcCCeEEEEecc--chhhHHHHhhcCcceeeeeccc
Confidence 24333 233566776666666655444455776 5678999999999998765443
|
| >d1pkla2 c.1.12.1 (A:1-87,A:187-357) Pyruvate kinase, N-terminal domain {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Leishmania mexicana [TaxId: 5665]
Probab=95.29 E-value=0.039 Score=47.29 Aligned_cols=195 Identities=10% Similarity=0.121 Sum_probs=117.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEecChh-------hHHHHHHHcCCC
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPE-------QRVPDFIKAGAD 140 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~dp~-------~~i~~~~~aGAd 140 (281)
.-.+.|+.|.++|+|.+-+..-.|. ...-.+.++.+|+. .+.++.+-+-+..|. ..++...+.|+|
T Consensus 32 ~~~~~l~~li~aGvdv~RiN~SHg~----~e~~~~~i~~iR~~~~~~g~~v~i~~d~~gp~~~t~kd~~di~~a~~~~vD 107 (258)
T d1pkla2 32 QSVEALKGLIQSGMSVARMNFSHGS----HEYHQTTINNVRQAAAELGVNIAIALDTKGPPAVSAKDRVDLQFGVEQGVD 107 (258)
T ss_dssp CSHHHHHHHHHHTEEEEEEETTSSC----HHHHHHHHHHHHHHHHHTTCCCEEEEECCCCCSSCHHHHHHHHHHHHHTCS
T ss_pred CCHHHHHHHHHcCCCEEEEECCCCC----HHHHHHHHHHHHHHHHHhCCCccccccccccccccccHHHHHHHHHhcCCC
Confidence 3456788999999998877555542 11223456666653 455555544444442 125556789999
Q ss_pred EEEEcccccccccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhccCCEEEEEeecCCCC-CCccchhHHHHHHHHH
Q 023494 141 IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPGFG-GQSFIESQVKKISDLR 217 (281)
Q Consensus 141 ~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~vD~IlvmsV~pG~~-GQ~f~~~~l~kI~~lr 217 (281)
++.+-.-- +..++.++-+.+++.|.++.+...-+ ..++.+.+++...|.|++--.+-|.- +-.-.|..-++|-+.+
T Consensus 108 ~ialSFVr-s~~Dv~~ir~~l~~~~~~~~iiaKIE~~~al~nldeI~~~sDgImIaRGDLg~ei~~e~vp~~Qk~Ii~~~ 186 (258)
T d1pkla2 108 MIFASFIR-SAEQVGDVRKALGPKGRDIMIICKIENHQGVQNIDSIIEESDGIMVARGDLGVEIPAEKVVVAQKILISKC 186 (258)
T ss_dssp EEEETTCC-SHHHHHHHHHHHCGGGTTSEEEEEECSHHHHHTHHHHHHHSSEEEECHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred eEEEeCCC-CHHHHHHHHHHHHHcCCCCceEEEecCchhhhhhhhHHhhCCeeeEechhhhhhcchhhhhhHHHHHHHHH
Confidence 99987654 35677777777777787777654434 45578888999999998732232221 1011233333333222
Q ss_pred HHhhhcCCCCeEEEecCC--------Ch-----hcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 218 RMCLEKGVNPWIEVDGGV--------GP-----KNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI--------~~-----e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.. . +.++.+..-+ .| ..+...+..|+|.+.+..-=-....|.++++.|.+.++
T Consensus 187 ~~---~--~kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~imLs~ETa~G~~P~~~V~~l~~i~~ 252 (258)
T d1pkla2 187 NV---A--GKPVICATQMLESMTYNPRPTRAEVSDVANAVFNGADCVMLSGETAKGKYPNEVVQYMARICL 252 (258)
T ss_dssp HH---H--TCCEEECSSSSGGGGTSSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHHHHHHHHHH
T ss_pred HH---c--CCCEEEEeceeHhhccCCCCCHHHHHHHHHHHHhCCCEEEEccccccCCCHHHHHHHHHHHHH
Confidence 22 2 2356565522 11 14556678899999996433334678999988887654
|
| >d2btma_ c.1.1.1 (A:) Triosephosphate isomerase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.25 E-value=0.076 Score=45.05 Aligned_cols=128 Identities=14% Similarity=0.181 Sum_probs=80.2
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccCC--
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVVD-- 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~vD-- 189 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+.+-+-+.-+-. . +.+...+....
T Consensus 79 a~mlkd~g~~yviiGHSErR~~~~E--~~~~i~~K~~~~~~~~l~pI~CiGE~~~e~~~~~~~~~~~~ql~~~~~~~~~~ 156 (251)
T d2btma_ 79 PVMLKDLGVTYVILGHSERRQMFAE--TDETVNKKVLAAFTRGLIPIICCGESLEEREAGQTNAVVASQVEKALAGLTPE 156 (251)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhCcceeeecchhhhhhhcc--hHHHHHHHHHHhhcCCCeEEEEecccccccccchhhhHHHHHHHhhhcccchh
Confidence 567888999988875 44 3566778888888999999887753210 0 11222222211
Q ss_pred -----EEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhh-----cCCCCeEEEecCCChhcHHHHHH-cCCcEEEEc
Q 023494 190 -----LVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLE-----KGVNPWIEVDGGVGPKNAYKVIE-AGANALVAG 254 (281)
Q Consensus 190 -----~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~-----~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvG 254 (281)
+|.+ +|=+ +|+.-.++-.+. ++.+|+.+.+ ...+++|.=.|+|+++|+.++.+ -++|++-+|
T Consensus 157 ~~~~iiIAY---EPvWAIGTG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG 233 (251)
T d2btma_ 157 QVKQAVIAY---EPIWAIGTGKSSTPEDANSVCGHIRSVVSRLFGPEAAEAIRIQYGGSVKPDNIRDFLAQQQIDGALVG 233 (251)
T ss_dssp HHTTCEEEE---CCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHTTSEEEEESSCCTTTHHHHHTSTTCCEEEES
T ss_pred ccceEEEEe---ccccccccccCCChhhhhhhHHHHHHHHHhhcchhhcccCcEEeeCCCCHhHHHHHhcCCCCCEEEec
Confidence 3333 5532 355544443322 3344444432 12357888899999999999876 678999999
Q ss_pred ccccCCCCH
Q 023494 255 SAVFGAKDY 263 (281)
Q Consensus 255 SaIf~a~dp 263 (281)
+|=.+.++.
T Consensus 234 ~ASl~~~~F 242 (251)
T d2btma_ 234 GASLEPASF 242 (251)
T ss_dssp GGGSSHHHH
T ss_pred hHhCCHHHH
Confidence 997754433
|
| >d1vhna_ c.1.4.1 (A:) Putative flavin oxidoreducatase TM0096 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Putative flavin oxidoreducatase TM0096 species: Thermotoga maritima [TaxId: 2336]
Probab=95.19 E-value=0.11 Score=45.10 Aligned_cols=152 Identities=17% Similarity=0.223 Sum_probs=93.0
Q ss_pred CCHHHHHHcCcC-CCCCeeEEEEecChhhHHH--HHHHcCCCEEEEccccc---------------ccccHHHHHHHHHH
Q 023494 102 IGPLVVDALRPV-TDLPLDVHLMIVEPEQRVP--DFIKAGADIVSVHCEQS---------------STIHLHRTLNQIKD 163 (281)
Q Consensus 102 ~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~--~~~~aGAd~Itvh~Ea~---------------~~~~i~~~l~~ik~ 163 (281)
.+....+.+... .+.|+.+.|.-+||..+.+ .+.+.|+|.|=+-.-+. ..+-+.++++++++
T Consensus 40 ~~~~~~~~~~~~~~e~p~~~Ql~g~~p~~~~~aa~~~~~~~~~IdlN~GCP~~~v~~~g~Ga~Ll~~p~~~~~iv~~~~~ 119 (305)
T d1vhna_ 40 MNSQKTEELLPQPHERNVAVQIFGSEPNELSEAARILSEKYKWIDLNAGCPVRKVVKEGAGGALLKDLRHFRYIVRELRK 119 (305)
T ss_dssp TTCHHHHHHSCCTTCTTEEEEEECSCHHHHHHHHHHHTTTCSEEEEEECCCCHHHHHTTCGGGGGSCHHHHHHHHHHHHH
T ss_pred hCChhhHhhccCCCCCCeEEEEeccchhhhhhhhhhhhhheeeeeEEEEecchhhcccccceeeccCHHHHHHHhhhhhh
Confidence 344444444433 4589999999999987654 34567999887763321 12235677777764
Q ss_pred -cCCcEEEEECCCCCH----HHHHHhhc-cCCEEEEEeecCCCCCCccc-hhHHHHHHHHHHHhhhcCCCCeEEEecCCC
Q 023494 164 -LGAKAGVVLNPATSL----SAIECVLD-VVDLVLIMSVNPGFGGQSFI-ESQVKKISDLRRMCLEKGVNPWIEVDGGVG 236 (281)
Q Consensus 164 -~G~k~Glai~p~t~i----e~~~~~l~-~vD~IlvmsV~pG~~GQ~f~-~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~ 236 (281)
.++.+.+=+....+. +.+..+.+ .+|.|.| |+-...|.+. +.-.+.|++++ .++++.+-|||.
T Consensus 120 ~~~~pvsvK~RlG~d~~~~~~~~~~l~~~G~~~itv---H~Rt~~q~~~~~a~~~~i~~~~-------~~ipvi~NGdI~ 189 (305)
T d1vhna_ 120 SVSGKFSVKTRLGWEKNEVEEIYRILVEEGVDEVFI---HTRTVVQSFTGRAEWKALSVLE-------KRIPTFVSGDIF 189 (305)
T ss_dssp HCSSEEEEEEESCSSSCCHHHHHHHHHHTTCCEEEE---ESSCTTTTTSSCCCGGGGGGSC-------CSSCEEEESSCC
T ss_pred hcccccccccccCcccchhhHHHHHHHHhCCcEEEe---chhhhhhccccchhhhHHHhhh-------hhhhhhcccccc
Confidence 466655544333222 22332222 3788865 4444445443 22244444432 247888999997
Q ss_pred -hhcHHHHHH-cCCcEEEEcccccCCCCH
Q 023494 237 -PKNAYKVIE-AGANALVAGSAVFGAKDY 263 (281)
Q Consensus 237 -~e~i~~~~~-aGAD~~VvGSaIf~a~dp 263 (281)
.+.+..+.+ .|+|.+-+|++.+..+-.
T Consensus 190 s~~d~~~~l~~tg~dgVMiGRgal~nP~i 218 (305)
T d1vhna_ 190 TPEDAKRALEESGCDGLLVARGAIGRPWI 218 (305)
T ss_dssp SHHHHHHHHHHHCCSEEEESGGGTTCTTH
T ss_pred cHHHHHHHHHhcCCCeEehhHHHHHhhhH
Confidence 888888765 699999999998876543
|
| >d1djqa1 c.1.4.1 (A:1-340) Trimethylamine dehydrogenase, N-terminal domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Trimethylamine dehydrogenase, N-terminal domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=95.18 E-value=0.058 Score=47.48 Aligned_cols=42 Identities=10% Similarity=0.150 Sum_probs=35.4
Q ss_pred CCeEEEecCCC-hhcHHHHHHcC-CcEEEEcccccCCCCHHHHH
Q 023494 226 NPWIEVDGGVG-PKNAYKVIEAG-ANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGSaIf~a~dp~~~~ 267 (281)
+.+|.+-|||+ ++.+.++++.| +|.+-+|+.++..+|....+
T Consensus 291 ~~pVi~~G~i~~~~~a~~~l~~G~aDlV~~gR~~iadPdl~~k~ 334 (340)
T d1djqa1 291 KKPVLGVGRYTDPEKMIEIVTKGYADIIGCARPSIADPFLPQKV 334 (340)
T ss_dssp SSCEEECSCCCCHHHHHHHHHTTSCSBEEESHHHHHCTTHHHHH
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCccchhhHHHHHHCccHHHHH
Confidence 46788889996 99999999999 99999999999777755443
|
| >d1d3ga_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.16 E-value=0.052 Score=48.13 Aligned_cols=143 Identities=17% Similarity=0.219 Sum_probs=86.7
Q ss_pred HHHHcCCCEEEEcccccccc---------cHH----HHHHHHHH----cCCcEEEEECCCCCHHHHHHhhc-----cCCE
Q 023494 133 DFIKAGADIVSVHCEQSSTI---------HLH----RTLNQIKD----LGAKAGVVLNPATSLSAIECVLD-----VVDL 190 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~~~---------~i~----~~l~~ik~----~G~k~Glai~p~t~ie~~~~~l~-----~vD~ 190 (281)
...+.+||++.+...+.... ... ..++..+. ..+.+.+-+.|+...+.+.++.+ .+|-
T Consensus 171 ~~~~~~ad~lelNiScPn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Pv~vKlsP~~~~~~i~~~a~~~~~~g~~g 250 (367)
T d1d3ga_ 171 RVLGPLADYLVVNVSSPNTAGLRSLQGKAELRRLLTKVLQERDGLRRVHRPAVLVKIAPDLTSQDKEDIASVVKELGIDG 250 (367)
T ss_dssp HHHGGGCSEEEEESCCTTSTTC----CHHHHHHHHHHHHHHHHTSCGGGCCEEEEEECSCCCHHHHHHHHHHHHHHTCCE
T ss_pred HHhhhcccccccccccccccccccccccchhhhHHHHHHHhhhhcccccCCccccccCcccchhhhhhhHHHHHhhhhhe
Confidence 34677999999987542111 011 11222121 12345667899877655444433 2565
Q ss_pred EEEEeec---------------CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 191 VLIMSVN---------------PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 191 IlvmsV~---------------pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
|..--.. -|.+|....+..+..++++++... .+++|..-|||. .+++.+++.+|||.+=+|
T Consensus 251 i~~~nt~~~~~~~~~~~~~~~~gg~sG~~~~~i~l~~v~~v~~~~~---~~ipIig~GGI~s~~Da~e~i~aGAs~VQi~ 327 (367)
T d1d3ga_ 251 LIVTNTTVSRPAGLQGALRSETGGLSGKPLRDLSTQTIREMYALTQ---GRVPIIGVGGVSSGQDALEKIRAGASLVQLY 327 (367)
T ss_dssp EEECCCBSCCCTTCCCTTTTSSSEEEEGGGHHHHHHHHHHHHHHTT---TCSCEEEESSCCSHHHHHHHHHHTCSEEEES
T ss_pred eecccccccccccccccccccccccccccchhhhHHHHHHHHHHhC---CCccEEEECCCCCHHHHHHHHHcCCCHHHhh
Confidence 5432110 112344455777777888877653 358899999998 889999999999999999
Q ss_pred ccc-cCCCC-HHHHHHHHHHhcCcCc
Q 023494 255 SAV-FGAKD-YAEAIKGIKTSKRPQA 278 (281)
Q Consensus 255 SaI-f~a~d-p~~~~~~l~~~~~~~~ 278 (281)
|++ |.-.+ +.+..+.|.+.+++..
T Consensus 328 Ta~~~~Gp~ii~~I~~~L~~~l~~~G 353 (367)
T d1d3ga_ 328 TALTFWGPPVVGKVKRELEALLKEQG 353 (367)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHcC
Confidence 995 54333 3455566666555443
|
| >d1trea_ c.1.1.1 (A:) Triosephosphate isomerase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.1 Score=44.28 Aligned_cols=136 Identities=18% Similarity=0.262 Sum_probs=81.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------HH----HHHHhhcc---C
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDV---V 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------ie----~~~~~l~~---v 188 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+++-+-+.-+.. .+ .++..+.. .
T Consensus 80 a~mlkd~G~~~viiGHSERR~~~~E--~~~~i~~K~~~al~~~l~pIlCvGE~~~~r~~~~~~~~~~~Ql~~~~~~~~~~ 157 (255)
T d1trea_ 80 AAMLKDIGAQYIIIGHSERRTYHKE--SDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQGAA 157 (255)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHHhccchhhhccccccccccc--cCHHHHHHHHHHHhhheeeEEecccchhhhcchhhhhhhhhhhhhhhcccchh
Confidence 678899999999875 45 3556788888899999999888853211 01 12222211 1
Q ss_pred --CEEEEEeecCCC---CCCccchhHHHH-HHHHHHHhh----hcCCCCeEEEecCCChhcHHHHHH-cCCcEEEEcccc
Q 023494 189 --DLVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCL----EKGVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAV 257 (281)
Q Consensus 189 --D~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~----~~~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaI 257 (281)
+-+ +..-+|=+ +|..-.++-.+. ...+|+.+. ....+++|-=.|+||++|+.++.. -++|++-+|++-
T Consensus 158 ~~~~i-iIAYEPvWAIGtG~~a~~~~~~~~~~~ir~~l~~~~~~~~~~v~iLYGGSV~~~N~~~i~~~~~vdG~LVGgAS 236 (255)
T d1trea_ 158 AFEGA-VIAYEPVWAIGTGKSATPAQAQAVHKFIRDHIAKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGAS 236 (255)
T ss_dssp GGTTC-EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred hccCc-EEEecchhhcccccccCcchhhhhHHHHHHHHhhhchhhcCCccEEecCCcCHhHHHHHhcCCCCCEEEechhh
Confidence 111 12336632 344433333322 222233221 111246777899999999998764 789999999998
Q ss_pred cCCCCHHHHHHH
Q 023494 258 FGAKDYAEAIKG 269 (281)
Q Consensus 258 f~a~dp~~~~~~ 269 (281)
.+.++...-++.
T Consensus 237 l~~~~F~~Ii~~ 248 (255)
T d1trea_ 237 LKADAFAVIVKA 248 (255)
T ss_dssp GCHHHHHHHHHH
T ss_pred cCHHHHHHHHHH
Confidence 876655544443
|
| >d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Isopentenyl-diphosphate delta-isomerase species: Thermus thermophilus [TaxId: 274]
Probab=94.95 E-value=0.22 Score=42.16 Aligned_cols=141 Identities=19% Similarity=0.176 Sum_probs=83.1
Q ss_pred cCcC-CCCCeeEEEEecChhhH----HHHH-HHcCCCEEEEccccc---------ccccHHHHHHHHHHcCCcEEEEECC
Q 023494 110 LRPV-TDLPLDVHLMIVEPEQR----VPDF-IKAGADIVSVHCEQS---------STIHLHRTLNQIKDLGAKAGVVLNP 174 (281)
Q Consensus 110 ir~~-t~~~idaHLmv~dp~~~----i~~~-~~aGAd~Itvh~Ea~---------~~~~i~~~l~~ik~~G~k~Glai~p 174 (281)
+++. ++.++.+.++...+.++ .... ...+++.+..|.... ......+......+.+..+.+-..+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~k~v~ 168 (310)
T d1vcfa1 89 VRKVAPKALLIANLGLAQLRRYGRDDLLRLVEMLEADALAFHVNPLQEAVQRGDTDFRGLVERLAELLPLPFPVMVKEVG 168 (310)
T ss_dssp CTTTCSSSCEEEEEEGGGGGTCCHHHHHHHHHHHTCSEEEEECCHHHHHHTTSCCCCTTHHHHHHHHCSCSSCEEEECSS
T ss_pred hHHhcCCcceeeeecccchhhhhHHHHHHHHHhcCCCeeccccccchhhhcccccccccHHHHHHHHhhccCCceeeeec
Confidence 4443 56778888887655432 2222 335888888875311 0112334444444556666554333
Q ss_pred C-CCHHHHHHhhcc-CCEEEEEeecCCCCCCccc--------------------hhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 175 A-TSLSAIECVLDV-VDLVLIMSVNPGFGGQSFI--------------------ESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 175 ~-t~ie~~~~~l~~-vD~IlvmsV~pG~~GQ~f~--------------------~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+ ...+..+.+.+. +|.|.+- -+ | |..+. ...++.+.++++.. .+++|.+|
T Consensus 169 ~~~~~e~a~~~~~aGvd~i~vs-n~-g--g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~al~~~~~~~----~~i~Ii~d 240 (310)
T d1vcfa1 169 HGLSREAALALRDLPLAAVDVA-GA-G--GTSWARVEEWVRFGEVRHPELCEIGIPTARAILEVREVL----PHLPLVAS 240 (310)
T ss_dssp SCCCHHHHHHHTTSCCSEEECC-CB-T--SCCHHHHHHTC--------CCTTCSCBHHHHHHHHHHHC----SSSCEEEE
T ss_pred CcccHHHHHHHHHcCCCEEEec-cc-c--ccchhhcccccccCchhhhhhhhcchHHHHHHHHHHhhc----CCCeEEeC
Confidence 2 456666666554 8988652 22 2 21110 11233444444432 35889999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEccccc
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf 258 (281)
|||. -..+-+.+.+|||.+-+||.+.
T Consensus 241 GGIr~g~Dv~KALalGAdaV~iGr~~l 267 (310)
T d1vcfa1 241 GGVYTGTDGAKALALGADLLAVARPLL 267 (310)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred CCCCchHHHHHHHHhCCCEeeEhHHHH
Confidence 9999 6688888999999999999875
|
| >d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Fructose-bisphosphate aldolase (FBP aldolase) species: Thermus aquaticus [TaxId: 271]
Probab=94.95 E-value=0.29 Score=42.59 Aligned_cols=188 Identities=15% Similarity=0.197 Sum_probs=115.5
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCc--ccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCC
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVDVMDGR--FVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGA 139 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~--fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGA 139 (281)
|..-+.|+..+.-.++.+++.....| +-+-.|. |.+ ..+. ..+..+.+..+.|+-+||==....+.+..+.++|.
T Consensus 20 ~AfN~~n~e~~~avi~AAee~~sPvI-iq~s~~~~~~~~-~~~~-~~~~~~a~~~~vpv~lHlDH~~~~e~i~~ai~~Gf 96 (305)
T d1rvga_ 20 GAFNVNNMEFLQAVLEAAEEQRSPVI-LALSEGAMKYGG-RALT-LMAVELAKEARVPVAVHLDHGSSYESVLRALRAGF 96 (305)
T ss_dssp EEEECCSHHHHHHHHHHHHHTTCCEE-EEEEHHHHHHHH-HHHH-HHHHHHHHHCSSCEEEEEEEECSHHHHHHHHHTTC
T ss_pred EEEEECCHHHHHHHHHHHHHHCCCEE-EECCccHHhHcc-HHHH-HHHHHHHhccCCcEEEeehhccChhhhHHHHhcCC
Confidence 34444455455556777888777765 4443331 221 1111 12233333467999999977666667889999998
Q ss_pred CEEEEcccccc----cccHHHHHHHHHHcCCcEE------------EEEC----CCCCHHHHHHhhcc--CCEEEE--Ee
Q 023494 140 DIVSVHCEQSS----TIHLHRTLNQIKDLGAKAG------------VVLN----PATSLSAIECVLDV--VDLVLI--MS 195 (281)
Q Consensus 140 d~Itvh~Ea~~----~~~i~~~l~~ik~~G~k~G------------lai~----p~t~ie~~~~~l~~--vD~Ilv--ms 195 (281)
+.|-+=.-..+ ...-+++++.++.+|+-+= +... .-|..+..+.+.+. +|.+.+ .+
T Consensus 97 tSVMiDgS~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGn 176 (305)
T d1rvga_ 97 TSVMIDKSHEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMERTGADYLAVAIGT 176 (305)
T ss_dssp SEEEECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHHHCCSEEEECSSC
T ss_pred ceEEEcCccccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHHHhCccHhhhhhhh
Confidence 87776543322 1234577888888886551 1111 12677888887764 898765 23
Q ss_pred ecCCCCCCccch-hHHHHHHHHHHHhhhcCCCCeEEEec-----------------------CCChhcHHHHHHcCCcEE
Q 023494 196 VNPGFGGQSFIE-SQVKKISDLRRMCLEKGVNPWIEVDG-----------------------GVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 196 V~pG~~GQ~f~~-~~l~kI~~lr~l~~~~~~~~~I~VDG-----------------------GI~~e~i~~~~~aGAD~~ 251 (281)
+| |..-++-.| -.+++|+++++.. ++++..-| |+..+.++++++.|+.-+
T Consensus 177 ~H-G~Yk~~~~~~l~~~~l~~I~~~~-----~~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~~GV~Ki 250 (305)
T d1rvga_ 177 SH-GAYKGKGRPFIDHARLERIARLV-----PAPLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAISLGIAKI 250 (305)
T ss_dssp CS-SSBCSSSSCCCCHHHHHHHHHHC-----CSCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHHTTEEEE
T ss_pred hh-cccCCCCcccchHHHHHHHHhcc-----CCCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHHcCeEEE
Confidence 33 221111111 2366777777664 36888777 778999999999999999
Q ss_pred EEccccc
Q 023494 252 VAGSAVF 258 (281)
Q Consensus 252 VvGSaIf 258 (281)
=+++.+.
T Consensus 251 Ni~T~l~ 257 (305)
T d1rvga_ 251 NTDTDLR 257 (305)
T ss_dssp EECHHHH
T ss_pred EeChHHH
Confidence 9998774
|
| >d1n55a_ c.1.1.1 (A:) Triosephosphate isomerase {Leishmania mexicana [TaxId: 5665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Leishmania mexicana [TaxId: 5665]
Probab=94.86 E-value=0.22 Score=41.97 Aligned_cols=130 Identities=15% Similarity=0.194 Sum_probs=80.8
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCH-------H----HHHHhhccCC--
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------S----AIECVLDVVD-- 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-------e----~~~~~l~~vD-- 189 (281)
..++.+.|++++.+. .| +.+.+.+=++.+.++|+.+-+-+.-+... + .+...+..+.
T Consensus 79 a~mL~d~g~~yviiGHSERR~~~~E--td~~v~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~l~~ql~~~l~~~~~~ 156 (249)
T d1n55a_ 79 MPILKDIGVHWVILGHSERRTYYGE--TDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLTKD 156 (249)
T ss_dssp HHHHHHHTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTCCGG
T ss_pred HHHHHHhccceeeeccchhhhhhcc--cHHHHHHHHHHHHHcCCceEEEecccccccccccceeeehhhhhhhhcccccc
Confidence 678899999999985 44 35567777888889999999888532110 1 1222222221
Q ss_pred ---EEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhcC-----CCCeEEEecCCChhcHHHHHH-cCCcEEEEccc
Q 023494 190 ---LVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEKG-----VNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA 256 (281)
Q Consensus 190 ---~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~~-----~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSa 256 (281)
-+. ..=+|=+ +|+.-.++-.+. ...+|+.+.+.. .+++|-=.|+|+++|+.++.+ -++|++-+|+|
T Consensus 157 ~~~~ii-IAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vdG~LVG~A 235 (249)
T d1n55a_ 157 AWNQVV-LAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGA 235 (249)
T ss_dssp GGGGEE-EEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCEEEEESSCCTTTHHHHHTSTTCCEEEESGG
T ss_pred cccceE-EEecceecccCCcccChHHHHHHHHHHHHHHHhhcchhhcCcccEEEcCCCCHhHHHHHhcCCCCCeEEeehh
Confidence 111 1235632 355444443333 334455543311 136788899999999998765 79999999999
Q ss_pred ccCCCCHH
Q 023494 257 VFGAKDYA 264 (281)
Q Consensus 257 If~a~dp~ 264 (281)
=.++ +..
T Consensus 236 Sl~~-~F~ 242 (249)
T d1n55a_ 236 SLKP-EFR 242 (249)
T ss_dssp GGST-THH
T ss_pred hcCH-HHH
Confidence 7764 344
|
| >d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Thermotoga maritima [TaxId: 2336]
Probab=94.80 E-value=0.15 Score=44.73 Aligned_cols=113 Identities=15% Similarity=0.248 Sum_probs=70.8
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccch
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
....+.++|.=++ +|-.. +.++..+.++.+++....++.++..+ ...++++.+++ .+|++.+ .+-- | ...
T Consensus 53 mA~als~~GGlGv-i~r~~-~~e~~~~~i~~vk~~~~~v~~~vgv~~~~~e~~~~li~agvd~ivI-d~A~---G--~~~ 124 (330)
T d1vrda1 53 LAKALAREGGIGI-IHKNL-TPDEQARQVSIVKKTRLLVGAAVGTSPETMERVEKLVKAGVDVIVI-DTAH---G--HSR 124 (330)
T ss_dssp HHHHHHTTTCEEE-ECSSS-CHHHHHHHHHHHHTCCBCCEEEECSSTTHHHHHHHHHHTTCSEEEE-CCSC---C--SSH
T ss_pred HHHHHHHCCCeEE-eeccc-chhhhHHHHHHHhhhccEEEEEEecCHHHHHHHHHHHHCCCCEEEE-ecCC---C--Cch
Confidence 4455667765333 45443 23455667778888887888877432 24566666665 4898765 2211 2 223
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvG 254 (281)
...+.++++|+..+ +.+|.+..-.+.+....+.++|||.+.+|
T Consensus 125 ~~~~~ik~ik~~~~----~~~viaGnV~t~~~a~~l~~~GaD~v~VG 167 (330)
T d1vrda1 125 RVIETLEMIKADYP----DLPVVAGNVATPEGTEALIKAGADAVKVG 167 (330)
T ss_dssp HHHHHHHHHHHHCT----TSCEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred hHHHHHHHHHHhCC----CCCEEeechhHHHHHHHHHHcCCCEEeec
Confidence 44556666666533 45664444555889999999999999997
|
| >d1gwja_ c.1.4.1 (A:) Morphinone reductase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Morphinone reductase species: Pseudomonas putida [TaxId: 303]
Probab=94.78 E-value=0.16 Score=45.15 Aligned_cols=125 Identities=19% Similarity=0.286 Sum_probs=76.4
Q ss_pred HHHcCCCEEEEccccc--------------------ccc----cHHHHHHHHHHc-C-CcEEEEECCCCCH--------H
Q 023494 134 FIKAGADIVSVHCEQS--------------------STI----HLHRTLNQIKDL-G-AKAGVVLNPATSL--------S 179 (281)
Q Consensus 134 ~~~aGAd~Itvh~Ea~--------------------~~~----~i~~~l~~ik~~-G-~k~Glai~p~t~i--------e 179 (281)
+.++|.|+|-+|+-.. +.+ -+.++++.+|+. | ..+++-+++.... +
T Consensus 172 A~~AGfDgVEIH~ahGYLl~qFLSp~~N~RtDeYGGSlENR~Rf~~EIi~aIR~~vg~~~v~~r~~~~~~~~g~~~~~~~ 251 (374)
T d1gwja_ 172 AKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDEPE 251 (374)
T ss_dssp HHHTTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSCHH
T ss_pred HHHhCCCEEEeccchhhhHHHHHHhhcCccccccccchhhhhhhHHHHHHHHHHHcCCcceeeeeeeeccccCCcccchH
Confidence 4678999999995421 001 166788888865 3 3577777653221 1
Q ss_pred -HHHHh---hc--cCCEEEEEeecCCCCCCcc-chhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcC-CcEE
Q 023494 180 -AIECV---LD--VVDLVLIMSVNPGFGGQSF-IESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAG-ANAL 251 (281)
Q Consensus 180 -~~~~~---l~--~vD~IlvmsV~pG~~GQ~f-~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aG-AD~~ 251 (281)
....+ ++ .+|++.+. .|.+.+..+ .+..+ .+.+++.. +.++.+.|+++++.+.++++.| +|.+
T Consensus 252 ~~~~~~~~~ld~~~i~~~~~~--~~~~~~~~~~~~~~~--~~~i~~~~-----~~pvi~~G~i~~~~ae~~l~~g~aDlV 322 (374)
T d1gwja_ 252 AMAFYLAGELDRRGLAYLHFN--EPDWIGGDITYPEGF--REQMRQRF-----KGGLIYCGNYDAGRAQARLDDNTADAV 322 (374)
T ss_dssp HHHHHHHHHHHHHTCSEEEEE--CSCBTTBCCCCCTTH--HHHHHHHC-----CSEEEEESSCCHHHHHHHHHTTSCSEE
T ss_pred HHHHHhhccccccCceEEEec--cCcccCCCcchhHHH--HHHHHHHc-----CCCEEEECCcCHHHHHHHHHcCCCcEe
Confidence 11111 22 26777653 344332221 22222 12334433 3678899999999999999988 9999
Q ss_pred EEcccccCCCCHHHHH
Q 023494 252 VAGSAVFGAKDYAEAI 267 (281)
Q Consensus 252 VvGSaIf~a~dp~~~~ 267 (281)
.+|+++...+|+-..+
T Consensus 323 ~~gR~~iadPd~~~K~ 338 (374)
T d1gwja_ 323 AFGRPFIANPDLPERF 338 (374)
T ss_dssp EESHHHHHCTTHHHHH
T ss_pred hhhHHHHHCccHHHHH
Confidence 9999999777765443
|
| >d1vkfa_ c.1.29.1 (A:) Glycerol uptake operon antiterminator-related protein TM1436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: GlpP-like family: GlpP-like domain: Glycerol uptake operon antiterminator-related protein TM1436 species: Thermotoga maritima [TaxId: 2336]
Probab=94.74 E-value=0.028 Score=45.38 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=88.9
Q ss_pred hhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCC-CeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEE
Q 023494 43 IVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGC-DWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVH 121 (281)
Q Consensus 43 ~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~-d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaH 121 (281)
++-|-+-.|.+.+.+..+. .+|-.|..+|.+.++.+.+.|= =++|+|..+| ++-....++
T Consensus 5 iIaavkd~d~l~~s~~~~i-flL~g~I~~l~~~v~~~k~~gK~v~VHiDLi~G-----L~~d~~av~------------- 65 (172)
T d1vkfa_ 5 IIAALWDMDSIGEIEPDVV-FLLKSDILNLKFHLKILKDRGKTVFVDMDFVNG-----LGEGEEAIL------------- 65 (172)
T ss_dssp EEEEESCSSSCCCCCSSEE-EECCEETTTHHHHHHHHHHTTCEEEEEGGGEET-----CCSSHHHHH-------------
T ss_pred hhhhHhhhhhhhhcCCCEE-EEecCcHHHHHHHHHHHHHcCCEEEEEeeecCC-----CCCCHHHHH-------------
Confidence 3444445566666554433 6788999999999999998873 3589999998 211222222
Q ss_pred EEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEE--EECCCCCHHHHHHhhc--cCCEEEEEeec
Q 023494 122 LMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGV--VLNPATSLSAIECVLD--VVDLVLIMSVN 197 (281)
Q Consensus 122 Lmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gl--ai~p~t~ie~~~~~l~--~vD~IlvmsV~ 197 (281)
|+ .+.++|+|. ++ -...++.+|+.|+.+.- .+-.+..++...+.+. .+|+|-+|
T Consensus 66 --------fl---k~~~~dGII------ST--k~~~i~~Ak~~Gl~tIqR~FliDS~al~~~~~~i~~~~PD~IEiL--- 123 (172)
T d1vkfa_ 66 --------FV---KKAGADGII------TI--KPKNYVVAKKNGIPAVLRFFALDSKAVERGIEQIETLGVDVVEVL--- 123 (172)
T ss_dssp --------HH---HHHTCSEEE------ES--CHHHHHHHHHTTCCEEEEEECCSHHHHHHHHHHHHHHTCSEEEEE---
T ss_pred --------HH---HHcCCCEEE------EC--CHHHHHHHHHcCCeEEEEEEeeehHHHHHHHHHHhhcCCCEEEEC---
Confidence 32 234577664 12 23578888999987753 3443445555445444 58999887
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC-CC-hhcHHHHHHcCC
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG-VG-PKNAYKVIEAGA 248 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG-I~-~e~i~~~~~aGA 248 (281)
||. ..|..+ ++.. +.+| +.|| |+ .|.+..+.++|+
T Consensus 124 PG~----i~p~ii------~~~~-----~~pi-IAGGLI~~~edv~~al~~g~ 160 (172)
T d1vkfa_ 124 PGA----VAPKVA------RKIP-----GRTV-IAAGLVETEEEAREILKHVS 160 (172)
T ss_dssp SGG----GHHHHH------TTST-----TSEE-EEESCCCSHHHHHHHTTTSS
T ss_pred Cch----hhHHHH------HHhc-----CCCE-EeeCCcCCHHHHHHHHhcCe
Confidence 652 112221 2221 2466 4555 44 778888886553
|
| >d1e0ta2 c.1.12.1 (A:1-69,A:168-344) Pyruvate kinase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.65 E-value=0.051 Score=46.19 Aligned_cols=195 Identities=14% Similarity=0.097 Sum_probs=110.9
Q ss_pred CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CCCCeeEEEEecChh------hHHHHHHHcCCCE
Q 023494 71 KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TDLPLDVHLMIVEPE------QRVPDFIKAGADI 141 (281)
Q Consensus 71 ~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~~~idaHLmv~dp~------~~i~~~~~aGAd~ 141 (281)
+-.+.|+.|.++|+|.+-+..-.|.. ..--+.++.+|+. .+.++-+.+-+.-|. +.++...+.|+|+
T Consensus 15 ~~~~~l~~li~aGvdv~RlN~SHg~~----~~~~~~i~~ir~~~~~~~~~~~I~~Dl~gp~ltekD~~~i~~a~~~~vD~ 90 (246)
T d1e0ta2 15 ESEEMLAKMLDAGMNVMRLNFSHGDY----AEHGQRIQNLRNVMSKTGKTAAILLDTKGPALAEKDKQDLIFGCEQGVDF 90 (246)
T ss_dssp CSHHHHHHHHHHTEEEEEEETTSSCH----HHHHHHHHHHHHHHHHHTCCCEEEEECCCCSSCHHHHHHHHHHHHHTCSE
T ss_pred CCHHHHHHHHHCCCCEEEEECCCCCH----HHHHHHHHHHHHHHHHcCCCCcccccccccccccCcchhhhHHHHcCCCE
Confidence 44567889999999988775554421 1223455555543 344433333333331 2455678999999
Q ss_pred EEEcccccccccHHHHHHHHHHcC---CcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC-CCCccchhHHHHHHHHH
Q 023494 142 VSVHCEQSSTIHLHRTLNQIKDLG---AKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF-GGQSFIESQVKKISDLR 217 (281)
Q Consensus 142 Itvh~Ea~~~~~i~~~l~~ik~~G---~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~lr 217 (281)
|.+-.-- +.+++.++-+.+++.| .++..=|.....++.+.++++..|.|++=--+-|. -+-.-.|..-++|-+.+
T Consensus 91 ialSFVr-~~~Dv~~~r~~l~~~~~~~~~iiaKIE~~~al~nldeIi~~sDgImIaRGDLg~ei~~e~vp~~Qk~ii~~~ 169 (246)
T d1e0ta2 91 VAASFIR-KRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKC 169 (246)
T ss_dssp EEESSCC-SHHHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHHSCHHHHHHHHHHHHHHH
T ss_pred EEEcCCC-CHHHHHHHHHHHHHhCCCCceEEEEecchhhhhchHHHHhhcceEEEEccchhhhCCHHHHHHHHHHHHHHH
Confidence 9998654 3566777777777764 34444565555668889999999999873222111 01111233333333333
Q ss_pred HHhhhcCCCCeEEEecCCCh-----------h--cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 218 RMCLEKGVNPWIEVDGGVGP-----------K--NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 218 ~l~~~~~~~~~I~VDGGI~~-----------e--~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
... +.++.+...+=. | .+..++.-|+|.+.+-.-=-....|.++++.|.+.++
T Consensus 170 ~~~-----~kpvi~ATq~LeSM~~~p~PTRAEv~Dv~nav~dG~D~vmLs~ETa~G~~P~~~v~~l~~i~~ 235 (246)
T d1e0ta2 170 IRA-----RKVVITATMMLDSMIKNPRPTDAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICE 235 (246)
T ss_dssp HHH-----TCEEEEECC---------CCCHHHHHHHHHHHHHTCSEEEECCC------CHHHHHHHHHHHH
T ss_pred HHh-----CCCEEEehhhhhhhhcCCCCchHHHHHHHHHHHhCCcEEEEccccccCCCHHHHHHHHHHHHH
Confidence 332 246666665421 2 4556678899999986332223567788888777543
|
| >d1a3xa2 c.1.12.1 (A:1-87,A:189-366) Pyruvate kinase, N-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.40 E-value=0.024 Score=48.84 Aligned_cols=196 Identities=14% Similarity=0.173 Sum_probs=114.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCc---C-CCCCeeEEEEecChh------hHHHHHHHcCC
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRP---V-TDLPLDVHLMIVEPE------QRVPDFIKAGA 139 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~---~-t~~~idaHLmv~dp~------~~i~~~~~aGA 139 (281)
.+-.+.|+.+.++|+|.+-+..-.|.. ..-.+.++.+|+ . .+.++-+-+-+..|. ..++.+.+.|+
T Consensus 31 s~~~e~l~~li~aG~dv~RlN~SHg~~----~~h~~~i~~iR~~~e~~~G~~v~i~~dl~~p~ltekD~~di~~a~~~~v 106 (265)
T d1a3xa2 31 TNNPETLVALRKAGLNIVRMNFSHGSY----EYHKSVIDNARKSEELYPGRPLAIALDTKGPALSEKDKEDLRFGVKNGV 106 (265)
T ss_dssp TCSHHHHHHHHHHTEEEEEEETTSCCH----HHHHHHHHHHHHHHHHCCCSCCBCEEECCCCSSCHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHcCCCEEEEECCCCCH----HHHHHHHHHHHHHhhhccCCceeeeccccchhcccchHHHHHHhhhccc
Confidence 344577899999999988775555531 112234444443 2 455554444444442 23556789999
Q ss_pred CEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC--CCHHHHHHhhccCCEEEEEeecCCC-CCCccchhHHHHHHHH
Q 023494 140 DIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA--TSLSAIECVLDVVDLVLIMSVNPGF-GGQSFIESQVKKISDL 216 (281)
Q Consensus 140 d~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~--t~ie~~~~~l~~vD~IlvmsV~pG~-~GQ~f~~~~l~kI~~l 216 (281)
|+|.+-.-- +.+++.++-+.+++.|..+.+...-+ ..++.+.++++..|.|++---+-|. -+-.-.|..-++|-+
T Consensus 107 D~ialSFVr-s~~Di~~~r~~l~~~~~~~~IiaKIE~~~al~NldeIi~~sDgimIaRGDLgvei~~e~vp~~Qk~Ii~- 184 (265)
T d1a3xa2 107 HMVFASFIR-TANDVLTIREVLGEQGKDVKIIVKIENQQGVNNFDEILKVTDGVMVARGDLGIEIPAPEVLAVQKKLIA- 184 (265)
T ss_dssp CEECCTTCC-SHHHHHHHHHHHCGGGTTSCCEEEECSHHHHTTHHHHHHHCSEEEEEHHHHHHHSCHHHHHHHHHHHHH-
T ss_pred ceEeeccCC-CHHHHHHHHHHHHHhcCCCeEEeeccchHHHhChHHHHhhcceeEEEccchhhhccHHHHHHHHHHHHH-
Confidence 999988654 34567777777777666666554434 4557888999999999873222111 011112333333333
Q ss_pred HHHhhhcCCCCeEEEecCC----------Chh---cHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcC
Q 023494 217 RRMCLEKGVNPWIEVDGGV----------GPK---NAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKR 275 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI----------~~e---~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~ 275 (281)
.+.+.+ .++.+..-+ +.. .+...+..|+|.+.+..-=-....|.++++.+.+.++
T Consensus 185 --~~~~~g--kpvivATq~LeSM~~~~~PTRAEv~Dvanav~dG~D~vmLs~ETA~G~~Pv~~V~~~~~I~~ 252 (265)
T d1a3xa2 185 --KSNLAG--KPVICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAVTTMAETAV 252 (265)
T ss_dssp --HHHHHT--CCEEEESSSSGGGGTCSSCCHHHHHHHHHHHHTTCSEECCSHHHHSCSCHHHHHHHHHHHHH
T ss_pred --HHHHcC--CcEEehhhhhhhhccCCCCcHHHHHHHHHHHHhCCCEEEEccccccCCCHHHHHHHHHHHHH
Confidence 233332 355565544 211 3444577799999986333334688999998887654
|
| >d1m6ja_ c.1.1.1 (A:) Triosephosphate isomerase {Entamoeba histolytica [TaxId: 5759]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Entamoeba histolytica [TaxId: 5759]
Probab=94.36 E-value=0.16 Score=43.24 Aligned_cols=128 Identities=17% Similarity=0.282 Sum_probs=80.0
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------HH----HHHHhhccC---
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDVV--- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------ie----~~~~~l~~v--- 188 (281)
..++.+.|++++.+. .| +.+.+.+=++.+.++|+.+-+-+--+.. .+ .+...+..+
T Consensus 86 a~mLkd~G~~yviiGHSERR~~f~E--td~~i~~K~~~al~~gl~pIlCIGE~~~~re~~~~~~~~~~Ql~~~~~~~~~~ 163 (260)
T d1m6ja_ 86 VGMLVDCQVPYVILGHSERRQIFHE--SNEQVAEKVKVAIDAGLKVIACIGETEAQRIANQTEEVVAAQLKAINNAISKE 163 (260)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHSCTG
T ss_pred HHHHHhhCcceeeecchhhhhhhcc--cHHHHHHHHHHHHhcCCcEEEEeccchhhhhcCchHHHHHHHHHhhhcccchh
Confidence 678899999999985 45 3556778888888999999888742211 01 122222211
Q ss_pred ---CEEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhcC-----CCCeEEEecCCChhcHHHHHH-cCCcEEEEcc
Q 023494 189 ---DLVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEKG-----VNPWIEVDGGVGPKNAYKVIE-AGANALVAGS 255 (281)
Q Consensus 189 ---D~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~~-----~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGS 255 (281)
..|+ .=+|=+ +|+.-.|+-.+. .+.+|+.+.+.. .+++|.=.|.||++|+.++.. -++|++-+|+
T Consensus 164 ~~~~iiI--AYEPvWAIGTG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~v~ilYGGSV~~~N~~~i~~~~~vDG~LVGg 241 (260)
T d1m6ja_ 164 AWKNIIL--AYEPVWAIGTGKTATPDQAQEVHQYIRKWMTENISKEVAEATRIQYGGSVNPANCNELAKKADIDGFLVGG 241 (260)
T ss_dssp GGGGEEE--EECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEECSCCCTTTHHHHHTSTTCCEEEESG
T ss_pred hhhccEE--eccceecccCCcccChHHHHHHHHHHHHHHHhhcchhhcCCCcEEEcCCCCHhHHHHHhCCCCCCeEEech
Confidence 2332 336632 355555544433 334444443211 136787899999999998875 7999999999
Q ss_pred cccCCCC
Q 023494 256 AVFGAKD 262 (281)
Q Consensus 256 aIf~a~d 262 (281)
|=.+.++
T Consensus 242 ASL~~~~ 248 (260)
T d1m6ja_ 242 ASLDAAK 248 (260)
T ss_dssp GGGSHHH
T ss_pred HhcCHHH
Confidence 8775443
|
| >d1o5xa_ c.1.1.1 (A:) Triosephosphate isomerase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Plasmodium falciparum [TaxId: 5833]
Probab=94.31 E-value=0.58 Score=39.22 Aligned_cols=130 Identities=16% Similarity=0.255 Sum_probs=80.4
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCH-----------HHHHHhhccCCE-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-----------SAIECVLDVVDL- 190 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-----------e~~~~~l~~vD~- 190 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+.+-+-+.-+... ..+...+..++.
T Consensus 78 a~mLkd~G~~~viiGHSERR~~~~E--td~~i~~K~~~al~~~l~pI~CiGE~~~~~~~~~~~~~~~~Ql~~~l~~~~~~ 155 (246)
T d1o5xa_ 78 AEIAKDLNIEYVIIGHFERRKYFHE--TDEDVREKLQASLKNNLKAVVCFGESLEQREQNKTIEVITKQVKAFVDLIDNF 155 (246)
T ss_dssp HHHHHHTTCCEEEECCHHHHHHSCC--CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHTTGGGCCCT
T ss_pred HHHHhhcccceeeeccccchhhhcc--chHHHHHHHHHHHHcccceEEEEecccccccchhhHHHHHHHHHhhhhhhccc
Confidence 578889999999885 34 35567778888889999999877532111 112222222321
Q ss_pred --EEEEeecCCC---CCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHH-cCCcEEEEccccc
Q 023494 191 --VLIMSVNPGF---GGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVF 258 (281)
Q Consensus 191 --IlvmsV~pG~---~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf 258 (281)
+ +..=+|=+ +|+.-.++..+ -.+.+|+.+.+. ..+++|-=.|.||++|+.++.+ -++|++-+|+|=.
T Consensus 156 ~~i-iIAYEPvWAIGTG~~as~~~i~e~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~idG~LVG~ASL 234 (246)
T d1o5xa_ 156 DNV-ILVYEPLWAIGTGKTATPEQAQLVHKEIRKIVKDTCGEKQANQIRILYGGSVNTENCSSLIQQEDIDGFLVGNASL 234 (246)
T ss_dssp TSE-EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSEEEECSCCCTTTHHHHHTSTTCCEEEECGGGG
T ss_pred ccE-EEEecccccccCCCCcccchhhhhhhHHHHHHHHHhhHhhcCcccEEEeCCCCHhHHHHHhcCCCCCEEEeecccC
Confidence 2 12336632 35554444433 334455544321 1136787899999999998865 7899999998866
Q ss_pred CCCCHH
Q 023494 259 GAKDYA 264 (281)
Q Consensus 259 ~a~dp~ 264 (281)
+ ++..
T Consensus 235 ~-~~F~ 239 (246)
T d1o5xa_ 235 K-ESFV 239 (246)
T ss_dssp S-TTHH
T ss_pred C-HHHH
Confidence 5 4443
|
| >d1q45a_ c.1.4.1 (A:) 12-oxophytodienoate reductase (OPR, OYE homolog) {Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 12-oxophytodienoate reductase (OPR, OYE homolog) species: Thale cress (Arabidopsis thaliana), OPR3 [TaxId: 3702]
Probab=94.24 E-value=0.29 Score=43.38 Aligned_cols=40 Identities=18% Similarity=0.289 Sum_probs=34.8
Q ss_pred CCeEEEecCCChhcHHHHHHcC-CcEEEEcccccCCCCHHH
Q 023494 226 NPWIEVDGGVGPKNAYKVIEAG-ANALVAGSAVFGAKDYAE 265 (281)
Q Consensus 226 ~~~I~VDGGI~~e~i~~~~~aG-AD~~VvGSaIf~a~dp~~ 265 (281)
+.+|.+.||++++.+.++++.| +|.+-+|+.++..+|...
T Consensus 307 ~~pv~~~Gg~~~~~ae~~l~~G~~DlV~~gR~liaDPdlv~ 347 (380)
T d1q45a_ 307 NGTFMSSGGFNKELGMQAVQQGDADLVSYGRLFIANPDLVS 347 (380)
T ss_dssp CSCEEEESSCCHHHHHHHHHTTSCSEEEESHHHHHCTTHHH
T ss_pred CCcEEeCCCCCHHHHHHHHHcCCccchhhhHHHHHCccHHH
Confidence 4689999999999999999987 999999999997776554
|
| >d1f76a_ c.1.4.1 (A:) Dihydroorotate dehydrogenase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.032 Score=48.95 Aligned_cols=108 Identities=19% Similarity=0.120 Sum_probs=69.9
Q ss_pred cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 153 HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 153 ~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
++.+..+.+.+.|......+|..+........ ... ...-|.+|....+.+++.++++++..+. +++|.--
T Consensus 226 ~i~~~a~~~~~~g~~gv~~int~~~~~~~~~~-~~~------~~~GGlSG~~i~~~al~~v~~v~~~~~~---~ipIIG~ 295 (336)
T d1f76a_ 226 ELIQVADSLVRHNIDGVIATNTTLDRSLVQGM-KNC------DQTGGLSGRPLQLKSTEIIRRLSLELNG---RLPIIGV 295 (336)
T ss_dssp HHHHHHHHHHHTTCSEEEECCCBCCCTTSTTS-TTT------TCSSEEEEGGGHHHHHHHHHHHHHHHTT---SSCEEEE
T ss_pred hhhhhHHHHHhcCccchhhhhhhhcccccccc-ccc------ccccccccchhHHHHHHHHHHHHHHcCC---CCeEEEE
Confidence 45666677777777666666654333211000 000 0011335677778889889888887642 4788889
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
|||. .+++.+++.+||+.+=+||++.. ++|. .++++.+
T Consensus 296 GGI~s~~Da~e~i~aGAsaVQv~Tal~~-~Gp~-ii~~I~~ 334 (336)
T d1f76a_ 296 GGIDSVIAAREKIAAGASLVQIYSGFIF-KGPP-LIKEIVT 334 (336)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEESHHHHH-HCHH-HHHHHHH
T ss_pred CCCCCHHHHHHHHHcCCcHHHHHHHHHh-cChH-HHHHHHh
Confidence 9998 88999999999999999999641 3443 4444443
|
| >d1kv5a_ c.1.1.1 (A:) Triosephosphate isomerase {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Trypanosoma brucei [TaxId: 5691]
Probab=93.95 E-value=0.37 Score=40.55 Aligned_cols=127 Identities=16% Similarity=0.190 Sum_probs=78.9
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCH-------HH----HHHhhccC---
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------SA----IECVLDVV--- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-------e~----~~~~l~~v--- 188 (281)
.+++.+.|++++.+. .| +.+.+.+-++.+.++|+.+.+-+.-+... +. +...+..+
T Consensus 79 ~~mLkd~G~~yvIiGHSERR~~~~E--t~~~i~~K~~~~~~~~l~pI~CiGE~~~~~~~~~~~~~l~~Ql~~~~~~~~~~ 156 (249)
T d1kv5a_ 79 LPILKDFGVNWIVLGHSERRAYYGE--TNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLKKA 156 (249)
T ss_dssp HHHHHHTTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCCGG
T ss_pred HHHHHhhccchhhhcchhhhhhhcc--cHHHHHHHHHHHHhcCCceEEEeccccccccccchHHHHHHHHHhhhcccccc
Confidence 678999999999985 34 34567777888889999998887532111 11 11122211
Q ss_pred C--EEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHHc-CCcEEEEccc
Q 023494 189 D--LVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIEA-GANALVAGSA 256 (281)
Q Consensus 189 D--~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~a-GAD~~VvGSa 256 (281)
+ -| +..=+|=+ +|+.-.++..+. .+.+|+.+.+. ..+++|-=.|.||++|+.++.+. ++|++-+|+|
T Consensus 157 ~~~~i-iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~~~ilYGGSV~~~N~~~i~~~~~vDG~LVGgA 235 (249)
T d1kv5a_ 157 DWAKV-VIAYEPVWAIGTGKVATPQQAQEAHALISSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGA 235 (249)
T ss_dssp GGGGE-EEEECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEEESSCCTTTHHHHHTSTTCCEEEESGG
T ss_pred cccce-EEecCceecccccccccchhhhhhhHHHHHHHHHhcChhhcCCCcEEEcCCCCHhHHHHHhcCCCCCEEEechH
Confidence 1 11 12336632 355544444433 33345544331 12367878999999999998765 7899999998
Q ss_pred ccCC
Q 023494 257 VFGA 260 (281)
Q Consensus 257 If~a 260 (281)
=.+.
T Consensus 236 Sl~~ 239 (249)
T d1kv5a_ 236 SLKP 239 (249)
T ss_dssp GGST
T ss_pred hcCH
Confidence 7764
|
| >d1ea0a2 c.1.4.1 (A:423-1193) Alpha subunit of glutamate synthase, central and FMN domains {Azospirillum brasilense [TaxId: 192]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Azospirillum brasilense [TaxId: 192]
Probab=93.80 E-value=0.22 Score=48.45 Aligned_cols=127 Identities=19% Similarity=0.270 Sum_probs=84.9
Q ss_pred HHHHH--HHcCCCEEEEccccc--ccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCC
Q 023494 130 RVPDF--IKAGADIVSVHCEQS--STIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFG 201 (281)
Q Consensus 130 ~i~~~--~~aGAd~Itvh~Ea~--~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~ 201 (281)
.|... ..-|.|.++-..... +.+++...+..+|+. |+++|+-+.....++.+..... .+|+|.+=+-+-|.+
T Consensus 530 ~IA~~R~~~~G~~~iSP~~h~di~siedL~~~I~~Lr~~~~~~pv~vKl~~~~~~~~i~~~v~ka~~D~I~IdG~eGGTG 609 (771)
T d1ea0a2 530 MIARLRHSTPGVMLISPPPHHDIYSIEDLAQLIYDLKQINPDAKVTVKLVSRSGIGTIAAGVAKANADIILISGNSGGTG 609 (771)
T ss_dssp HHHHHHTCCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTCEEEEEEECCTTHHHHHHHHHHTTCSEEEEECTTCCCS
T ss_pred HHHHhcCCCCCCCccCCCCCCCCCCHHHHHHHHHHHHhcCCCCCEEEEECCcCcHHHHHHHHHhcCCCEEEEecCCCccc
Confidence 44444 345888888654431 345566677777763 6899998876777877666542 489998865554443
Q ss_pred CCc--cchhH----HHHHHHHHHHhhhcCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 202 GQS--FIESQ----VKKISDLRRMCLEKGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 202 GQ~--f~~~~----l~kI~~lr~l~~~~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
.-+ +...+ ..-|.+.++.+..+|+ .+.+.+|||+. +.++-.....|||.+-.|++
T Consensus 610 Aap~~~~d~~GlP~~~~l~~~~~~L~~~glr~~V~l~a~Ggl~t~~Dv~ka~aLGAD~v~~gt~ 673 (771)
T d1ea0a2 610 ASPQTSIKFAGLPWEMGLSEVHQVLTLNRLRHRVRLRTDGGLKTGRDIVIAAMLGAEEFGIGTA 673 (771)
T ss_dssp SEETTHHHHSCCCHHHHHHHHHHHHHTTTCTTTSEEEEESSCCSHHHHHHHHHTTCSEEECCHH
T ss_pred cccHHHhhcCCcCHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchHHhHH
Confidence 322 22111 2336667777765553 47899999998 77888999999999999976
|
| >d1tv5a1 c.1.4.1 (A:158-566) Dihydroorotate dehydrogenase {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Dihydroorotate dehydrogenase species: Plasmodium falciparum [TaxId: 5833]
Probab=93.80 E-value=0.016 Score=52.67 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=76.7
Q ss_pred ccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE
Q 023494 152 IHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV 231 (281)
Q Consensus 152 ~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V 231 (281)
+++.+.++.+++.|....++.|..+....... .. ...-|.+|.+..|..++.++++++.... +++|.-
T Consensus 280 ~~i~~i~~~~~~~g~dgii~~Nt~~~~~~~~~-~~--------~~~GGlSG~~l~~~al~~v~~v~~~~~~---~ipIIG 347 (409)
T d1tv5a1 280 EQKKEIADVLLETNIDGMIISNTTTQINDIKS-FE--------NKKGGVSGAKLKDISTKFICEMYNYTNK---QIPIIA 347 (409)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCBSCCCCCGG-GT--------TCCSEEEEHHHHHHHHHHHHHHHHHTTT---CSCEEE
T ss_pred hhhHHHHHHHHhccccceeccccccccccccc-cc--------ccCCcccchhHHHHHHHHHHHHHHHcCC---CceEEE
Confidence 35778888888888888777776544321000 00 0012345677778888888888887643 478888
Q ss_pred ecCCC-hhcHHHHHHcCCcEEEEcccc-cCCCC-HHHHHHHHHHhcCc
Q 023494 232 DGGVG-PKNAYKVIEAGANALVAGSAV-FGAKD-YAEAIKGIKTSKRP 276 (281)
Q Consensus 232 DGGI~-~e~i~~~~~aGAD~~VvGSaI-f~a~d-p~~~~~~l~~~~~~ 276 (281)
-|||. .+.+.+.+.+|||.+=+||++ ++-.. +.+..+.|.+.+++
T Consensus 348 vGGI~s~~Da~e~i~AGAs~VQv~T~li~~Gp~~v~~I~~~L~~~l~~ 395 (409)
T d1tv5a1 348 SGGIFSGLDALEKIEAGASVCQLYSCLVFNGMKSAVQIKRELNHLLYQ 395 (409)
T ss_dssp ESSCCSHHHHHHHHHTTEEEEEESHHHHHHGGGHHHHHHHHHHHHHHH
T ss_pred ECCCCCHHHHHHHHHcCCCHHhhhhHHHhcChHHHHHHHHHHHHHHHH
Confidence 99997 889999999999999999986 44333 34444566665543
|
| >d1r2ra_ c.1.1.1 (A:) Triosephosphate isomerase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.70 E-value=0.48 Score=39.77 Aligned_cols=126 Identities=16% Similarity=0.173 Sum_probs=78.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------H----HHHHHhhccC---
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------L----SAIECVLDVV--- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------i----e~~~~~l~~v--- 188 (281)
..++.+.|++++.+. .| +.+.+.+=++.+.++|+.+.+-+.-.-. . +.++..++.+
T Consensus 78 a~mL~d~G~~~viiGHSERR~~f~E--td~~i~~K~~~al~~gl~pIlCVGEt~~er~~g~t~~~l~~Ql~~~l~~~~~~ 155 (246)
T d1r2ra_ 78 PGMIKDCGATWVVLGHSERRHVFGE--SDELIGQKVAHALSEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVKDW 155 (246)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHTCSCG
T ss_pred HHHHHHHhhhhhhhcchhhhhhcCC--CHHHHHHHHHHhhccCceEEEEecCccccccccchhhhHHHHHHHHhhccccc
Confidence 678899999999985 34 3556778888888999998887753211 0 1122333322
Q ss_pred C-EEEEEeecCCC---CCCccchhHHH-HHHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHH-HcCCcEEEEcccc
Q 023494 189 D-LVLIMSVNPGF---GGQSFIESQVK-KISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVI-EAGANALVAGSAV 257 (281)
Q Consensus 189 D-~IlvmsV~pG~---~GQ~f~~~~l~-kI~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~-~aGAD~~VvGSaI 257 (281)
+ .|+ .=+|=+ +|..-.|+..+ -...+|+.+.+. ..+++|-=.|.+|++|+.++. .-++|++-+|+|=
T Consensus 156 ~~iii--AYEPvWAIGTG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGgAS 233 (246)
T d1r2ra_ 156 SKVVL--AYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGAS 233 (246)
T ss_dssp GGEEE--EECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHCCEEECSCCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred ceEEE--ecCceeeccCCCCccchhhhhhHHHHHHHHHHhhhHhhcCcccEEecCCCCHHHHHHHhcCCCCCeEEeehhh
Confidence 1 222 335622 35444444332 233444444321 113577789999999999986 4789999999987
Q ss_pred cCC
Q 023494 258 FGA 260 (281)
Q Consensus 258 f~a 260 (281)
.+.
T Consensus 234 L~~ 236 (246)
T d1r2ra_ 234 LKP 236 (246)
T ss_dssp GST
T ss_pred CCH
Confidence 753
|
| >d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Putative aldolase YihT species: Salmonella typhimurium [TaxId: 90371]
Probab=93.65 E-value=1.4 Score=37.35 Aligned_cols=123 Identities=19% Similarity=0.123 Sum_probs=68.8
Q ss_pred HHHHHHHcCCCEEEEccccc---ccc----cHHHHHHHHHHcCCcEEEEECC---C-C-C---HHHHHH----hhc-cCC
Q 023494 130 RVPDFIKAGADIVSVHCEQS---STI----HLHRTLNQIKDLGAKAGVVLNP---A-T-S---LSAIEC----VLD-VVD 189 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~---~~~----~i~~~l~~ik~~G~k~Glai~p---~-t-~---ie~~~~----~l~-~vD 189 (281)
.++.+...|+|.|-++.--. +.+ .+.++.+.++++|+...+.+-| . . . -+.+.. ..+ .+|
T Consensus 111 sv~~a~~~GadaVk~lv~~~~d~~~e~~~~~~~~l~~~c~~~glp~llE~l~~~~~~~~~~~~~~~i~~a~r~~~e~GaD 190 (291)
T d1to3a_ 111 NAQAVKRDGAKALKLLVLWRSDEDAQQRLNMVKEFNELCHSNGLLSIIEPVVRPPRCGDKFDREQAIIDAAKELGDSGAD 190 (291)
T ss_dssp CHHHHHHTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHTTTCEEEEEEEECCCSSCSCCCHHHHHHHHHHHHTTSSCS
T ss_pred CHHHHHhccCceEEEEEeeCCcccHHHHHHHHHHHHHHHHHcCCcceEEEEecCCCcccccchHHHHHHHHHHHHhcCCc
Confidence 36788899999887653211 111 2456667788899988875431 1 1 1 112221 122 267
Q ss_pred EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe-EEEecCCChhcHH----HHHHcCCcEEEEcccccCC
Q 023494 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW-IEVDGGVGPKNAY----KVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~-I~VDGGI~~e~i~----~~~~aGAD~~VvGSaIf~a 260 (281)
.+-+ -.||.... .. .+.+...++..... ..+ |...||.+.+.+. ...++||.+|++|++||..
T Consensus 191 i~K~--~~p~~~~~-~~---~~~~~~~~~~~~~~--~~p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~ 258 (291)
T d1to3a_ 191 LYKV--EMPLYGKG-AR---SDLLTASQRLNGHI--NMPWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSS 258 (291)
T ss_dssp EEEE--CCGGGGCS-CH---HHHHHHHHHHHHTC--CSCEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGG
T ss_pred EEEE--ecCCCchh-hh---HHHHHHHHHHhhcC--CCcEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChhhhhC
Confidence 6543 23553211 11 12233333333322 234 6668899877554 4677999999999999964
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=93.53 E-value=1.6 Score=37.26 Aligned_cols=181 Identities=13% Similarity=0.168 Sum_probs=111.5
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHH----HHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEE
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPL----VVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIV 142 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~----~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~I 142 (281)
.|+..+.-.++.+++.+...| +-+-.|.. . -+|.+ +++.+.+..+.|+-+||==......+..+.++|.+.|
T Consensus 25 ~~~e~~~avi~AAe~~~sPvI-lq~~~~~~-~--~~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~ai~~GftSV 100 (284)
T d1gvfa_ 25 HNAETIQAILEVCSEMRSPVI-LAGTPGTF-K--HIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSA 100 (284)
T ss_dssp CSHHHHHHHHHHHHHHTCCCE-EEECTTHH-H--HSCHHHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCCEE
T ss_pred CCHHHHHHHHHHHHHHCCCEE-EEcCHhHH-h--hCCHHHHHHHHHHHHHhcCCeEEeeeccccchHHHHHHHhcCCCeE
Confidence 344444455667777777654 43333321 0 12333 3344444567999999966555567888999998877
Q ss_pred EEccccccc----ccHHHHHHHHHHcCCcEEEEE--------------C--CCCCHHHHHHhhcc--CCEEEE--EeecC
Q 023494 143 SVHCEQSST----IHLHRTLNQIKDLGAKAGVVL--------------N--PATSLSAIECVLDV--VDLVLI--MSVNP 198 (281)
Q Consensus 143 tvh~Ea~~~----~~i~~~l~~ik~~G~k~Glai--------------~--p~t~ie~~~~~l~~--vD~Ilv--msV~p 198 (281)
-+=.-..+. ..-.++.+.++++|+-+-.-| . .-|..+....+.+. +|.+.+ .++|-
T Consensus 101 MiD~S~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~~TgvD~LAvaiGt~HG 180 (284)
T d1gvfa_ 101 MIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHG 180 (284)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHHHHCCSEEEECSSCCSS
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHHHhCCCEEeeecCceee
Confidence 665433221 124567777888886652211 1 12677778887764 898754 23332
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC--CChhcHHHHHHcCCcEEEEccccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG--VGPKNAYKVIEAGANALVAGSAVF 258 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG--I~~e~i~~~~~aGAD~~VvGSaIf 258 (281)
-+.+.+ .--+++|+++++.. ++++..=|| +..+.++++++.|+.-+=+|+.+.
T Consensus 181 ~y~~~p--~l~~~~L~~i~~~~-----~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~T~l~ 235 (284)
T d1gvfa_ 181 LYSKTP--KIDFQRLAEIREVV-----DVPLVLHGASDVPDEFVRRTIELGVTKVNVATELK 235 (284)
T ss_dssp CCSSCC--CCCHHHHHHHHHHC-----CSCEEECCCTTCCHHHHHHHHHTTEEEEEECHHHH
T ss_pred ccCCCC--ccccchhhhhhccc-----cCCeEeeCCCCCCHHHHHHHHHcCeEEEEechHHH
Confidence 122211 11256777777665 368888775 447899999999999999999874
|
| >d1tb3a1 c.1.4.1 (A:1-349) Hydroxyacid oxidase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Hydroxyacid oxidase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.33 E-value=0.081 Score=46.63 Aligned_cols=111 Identities=13% Similarity=0.199 Sum_probs=69.3
Q ss_pred HHHHHHHHc-CCcEEE-EECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEe
Q 023494 156 RTLNQIKDL-GAKAGV-VLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVD 232 (281)
Q Consensus 156 ~~l~~ik~~-G~k~Gl-ai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VD 232 (281)
+.+.++|+. +..+.+ -+ ...+......+ .+|.|.+ +.|.| ..-...+.+++.+.++++.... +++|-+|
T Consensus 207 ~~i~~l~~~~~~pii~Kgi---~~~~da~~a~~~G~d~i~v-snhgg-r~~d~~~~~~~~l~~i~~~~~~---~~~iiad 278 (349)
T d1tb3a1 207 NDLSLLQSITRLPIILKGI---LTKEDAELAMKHNVQGIVV-SNHGG-RQLDEVSASIDALREVVAAVKG---KIEVYMD 278 (349)
T ss_dssp HHHHHHHTTCCSCEEEEEE---CSHHHHHHHHHTTCSEEEE-CCGGG-TSSCSBCCHHHHHHHHHHHHTT---SSEEEEE
T ss_pred HHHHHHHHhcCCCcccchh---hhhHHHHHHHHhhccceee-ecccc-ccccccccchhhcceeeeccCC---CeeEEec
Confidence 456777765 444333 22 23344444333 4888876 33433 2333457777777777776643 5889999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCC------CCHHHHHHHHHHhc
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSK 274 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a------~dp~~~~~~l~~~~ 274 (281)
|||. --.+-+.+..|||.+-+|+.+..+ +-..+.++.|++.+
T Consensus 279 GGIR~G~Dv~KALALGA~~V~igrp~L~~la~~G~~gv~~~l~~l~~EL 327 (349)
T d1tb3a1 279 GGVRTGTDVLKALALGARCIFLGRPILWGLACKGEDGVKEVLDILTAEL 327 (349)
T ss_dssp SSCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcCcHHHHHHHHHcCCCEEEEChHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999 447778899999999999875421 22345555555543
|
| >d2g50a2 c.1.12.1 (A:12-115,A:218-395) Pyruvate kinase, N-terminal domain {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Phosphoenolpyruvate/pyruvate domain family: Pyruvate kinase domain: Pyruvate kinase, N-terminal domain species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.33 E-value=0.22 Score=42.78 Aligned_cols=205 Identities=12% Similarity=0.114 Sum_probs=119.7
Q ss_pred eEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC---CC----CCeeEEEEecC--h--
Q 023494 59 IVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV---TD----LPLDVHLMIVE--P-- 127 (281)
Q Consensus 59 ~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~---t~----~~idaHLmv~d--p-- 127 (281)
+|...| +.-.+-.+.|+.|.++|++.+-+..-.|.. ..-.+.++.+|+. .+ +.-++.++... |
T Consensus 34 KIIaTi--GPas~~~e~l~~Li~aGvnv~RiN~SHg~~----e~h~~~i~~iR~~~~~~~~~~il~~~~~I~~d~~~~~l 107 (282)
T d2g50a2 34 GIICTI--GPASRSVETLKEMIKSGMNVARMNFSHGTH----EYHAETIKNVRTATESFASDPILYRPVAVALDTKGPAV 107 (282)
T ss_dssp EEEEEC--STTTCSHHHHHHHHHHTCCEEEEETTSSCH----HHHHHHHHHHHHHHHTTTTCTTTCCCCEEEEECCCCSS
T ss_pred cEEEEe--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCH----HHHHHHHHHHHHHHHHhCCCceeccccccccccccccc
Confidence 455555 334455678899999999998775444421 1113445555543 11 11223333322 2
Q ss_pred --h--hHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEE--ECCCCCHHHHHHhhccCCEEEEEeecCCC-
Q 023494 128 --E--QRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVV--LNPATSLSAIECVLDVVDLVLIMSVNPGF- 200 (281)
Q Consensus 128 --~--~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Gla--i~p~t~ie~~~~~l~~vD~IlvmsV~pG~- 200 (281)
. ..++...+.|+|++.+-.-- +.+++.++-+.++++|..+.+. |.....++.+.+++...|.|++=-.+-|.
T Consensus 108 ~~~di~di~~a~~~~vD~ialSFVr-s~~DI~~~r~~l~~~g~~~~IiaKIE~~~al~NldeIi~~sDgIMIaRGDLg~e 186 (282)
T d2g50a2 108 SEKDIQDLKFGVEQDVDMVFASFIR-KAADVHEVRKILGEKGKNIKIISKIENHEGVRRFDEILEASDGIMVARGDLGIE 186 (282)
T ss_dssp CHHHHHHHHHHHHTTCSEEEETTCC-SHHHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHHSSEEEEEHHHHHHH
T ss_pred cchHHHHHHHhhhccccceeecccC-CHHHHHHHHHHHHHcCCCceEEEeecchhhhhcchhhccccceeeeeccccccc
Confidence 1 12455678999999998654 3566777777888777666654 55445668888999999999873222111
Q ss_pred CCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC----------Ch---hcHHHHHHcCCcEEEEcccccCCCCHHHHH
Q 023494 201 GGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV----------GP---KNAYKVIEAGANALVAGSAVFGAKDYAEAI 267 (281)
Q Consensus 201 ~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI----------~~---e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~ 267 (281)
-+..-.|..-++|-+.+.. . +.++.|..-+ |. ..+...+..|+|++.+..-=-....|.+++
T Consensus 187 i~~e~vp~~Qk~Ii~~~~~---~--~kpvivAt~~leSMi~~~~pTRaEv~Dianav~~G~D~imLs~ETa~G~~p~~~V 261 (282)
T d2g50a2 187 IPAEKVFLAQKMIIGRCNR---A--GKPVICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAV 261 (282)
T ss_dssp SCGGGHHHHHHHHHHHHHH---H--TCCEEEESSTTGGGGTCSSCCHHHHHHHHHHHHHTCSEEEESHHHHTCSCHHHHH
T ss_pred cCHHHhHHHHHHHHHHHHh---c--CCcEEEecccccccccCCCCCHHHHHHHHHHHHhCCCEEEECcccccCCCHHHHH
Confidence 1111223333333333332 2 2356555433 11 145567889999999985443346889999
Q ss_pred HHHHHhcC
Q 023494 268 KGIKTSKR 275 (281)
Q Consensus 268 ~~l~~~~~ 275 (281)
+.+.+.++
T Consensus 262 ~~l~~i~~ 269 (282)
T d2g50a2 262 RMQHLIAR 269 (282)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88887654
|
| >d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR species: Moorella thermoacetica [TaxId: 1525]
Probab=93.02 E-value=0.96 Score=37.95 Aligned_cols=97 Identities=14% Similarity=0.140 Sum_probs=55.4
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccc---cCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHH--cCCC
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNI---TIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIK--AGAD 140 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~---~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~--aGAd 140 (281)
.-|+....+..+.+.+.|+|+| ||==| ++.. ..=..++..+++.++.|+-+| +.+|+ .++...+ +|++
T Consensus 21 ~~d~~~~~~~A~~m~~~GAdiI--DIg~g--~~~~~e~e~~~~vi~~l~~~~~vpiSID--T~~~~-v~~aal~~~~Ga~ 93 (262)
T d1f6ya_ 21 ERDPAPVQEWARRQEEGGARAL--DLNVG--PAVQDKVSAMEWLVEVTQEVSNLTLCLD--STNIK-AIEAGLKKCKNRA 93 (262)
T ss_dssp HTCHHHHHHHHHHHHHHTCSEE--EEBCC------CHHHHHHHHHHHHHTTCCSEEEEE--CSCHH-HHHHHHHHCSSCE
T ss_pred cCCHHHHHHHHHHHHHCCCCEE--EeCCC--CCCCCHHHHHHHHHHHHHHhhcCCcccc--CCccH-HHHHHHHhhcccc
Confidence 3466667777778888899986 66322 1211 112334555666677776653 34544 5555655 6998
Q ss_pred EEE-EcccccccccHHHHHHHHHHcCCcEEEEE
Q 023494 141 IVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVL 172 (281)
Q Consensus 141 ~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai 172 (281)
+|- +..+ ...........+++|.-+....
T Consensus 94 iINdIsg~---~~~~~~~~~~~~~~~~~v~~~~ 123 (262)
T d1f6ya_ 94 MINSTNAE---REKVEKLFPLAVEHGAALIGLT 123 (262)
T ss_dssp EEEEECSC---HHHHHHHHHHHHHTTCEEEEES
T ss_pred eeechhcc---cchHHHHHHHHhcCCceEEEEe
Confidence 763 2233 1234455666778877665543
|
| >d1kbia1 c.1.4.1 (A:98-511) Flavocytochrome b2, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Flavocytochrome b2, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.88 E-value=0.15 Score=45.93 Aligned_cols=116 Identities=16% Similarity=0.165 Sum_probs=66.2
Q ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhh--cCCCCeEEEe
Q 023494 156 RTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLE--KGVNPWIEVD 232 (281)
Q Consensus 156 ~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~--~~~~~~I~VD 232 (281)
+.++++++.....-+...-. ..+....... .+|.+.+. +.|.....+.+....-+..+.+.+.. .+.+++|-+|
T Consensus 236 ~~i~~i~~~~~~~~i~kgi~-~~~da~~~~~~G~~~i~vs--nhggr~~d~~~~~~~~l~~i~~~~~~~~v~~~~~viad 312 (414)
T d1kbia1 236 KDIEELKKKTKLPIVIKGVQ-RTEDVIKAAEIGVSGVVLS--NHGGRQLDFSRAPIEVLAETMPILEQRNLKDKLEVFVD 312 (414)
T ss_dssp HHHHHHHHHCSSCEEEEEEC-SHHHHHHHHHTTCSEEEEC--CTTTTSSTTCCCHHHHHHHHHHHHHTTTCBTTBEEEEE
T ss_pred HHHHHHhccCCceEEeeccc-hhHHHHHHHhcCCcceeec--cccccccccccccccchhhhhhhhhhhccCCceeEEec
Confidence 34666665433322222212 2333333333 47887652 44443333444445555555555432 2345789999
Q ss_pred cCCC-hhcHHHHHHcCCcEEEEcccccCC------CCHHHHHHHHHHhc
Q 023494 233 GGVG-PKNAYKVIEAGANALVAGSAVFGA------KDYAEAIKGIKTSK 274 (281)
Q Consensus 233 GGI~-~e~i~~~~~aGAD~~VvGSaIf~a------~dp~~~~~~l~~~~ 274 (281)
|||. --.+-+.+..|||.+-+|+.+... +...+.++.|++.+
T Consensus 313 GGIR~G~DVaKALALGAdaVgigrp~L~~la~~G~egv~~~l~~l~~EL 361 (414)
T d1kbia1 313 GGVRRGTDVLKALCLGAKGVGLGRPFLYANSCYGRNGVEKAIEILRDEI 361 (414)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9999 447778899999999999876532 23445555555533
|
| >d1mo0a_ c.1.1.1 (A:) Triosephosphate isomerase {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=92.59 E-value=1.3 Score=37.12 Aligned_cols=126 Identities=16% Similarity=0.197 Sum_probs=78.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCC-------HH----HHHHhhcc---C
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATS-------LS----AIECVLDV---V 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~-------ie----~~~~~l~~---v 188 (281)
..++.+.|++++.+. .| +.+.+.+-++.+.++|+.+-+-+.-... .+ .+...++. .
T Consensus 87 a~mL~d~G~~yviiGHSERR~~~~E--td~~i~~K~~~al~~~l~pIlCvGE~~~~~~~~~~~~~~~~Ql~~~~~~~~~~ 164 (257)
T d1mo0a_ 87 PAMIKDLGLEWVILGHSERRHVFGE--SDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGVSW 164 (257)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHTTTCCS
T ss_pred HHHHHHhCcceeeecchhhhhhhcc--hHHHHHHHHHHHhhccceEEEeeccccccccccchhheehhhhhccccccccc
Confidence 678999999999985 34 3566778888889999999988742211 11 12222221 1
Q ss_pred CEEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHH-cCCcEEEEccccc
Q 023494 189 DLVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAVF 258 (281)
Q Consensus 189 D~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaIf 258 (281)
+-+ +..=+|=+ +|+.-.++.++. .+.+|+.+.+. ..+++|-=.|.|+++|+.++.+ -++|++-+|+|=.
T Consensus 165 ~~i-iIAYEPvWAIGtG~~a~~~~i~e~~~~Ir~~l~~~~~~~~~~~~~iLYGGSV~~~N~~~i~~~~~vDG~LVGgASL 243 (257)
T d1mo0a_ 165 ENI-VIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASL 243 (257)
T ss_dssp TTE-EEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHTCHHHHHHSCEEEESSCCTTTHHHHTTSTTCCEEEESGGGG
T ss_pred cce-EEEecchhhcccccccchhhhhhHHHHHHHHHHHhhCHhhcCcccEEeeCCcCHHHHHHHhcCCCCCeEEeehHhC
Confidence 212 12336632 355554444333 34444444321 1135677799999999998866 5899999998866
Q ss_pred C
Q 023494 259 G 259 (281)
Q Consensus 259 ~ 259 (281)
+
T Consensus 244 ~ 244 (257)
T d1mo0a_ 244 K 244 (257)
T ss_dssp S
T ss_pred C
Confidence 5
|
| >d1b9ba_ c.1.1.1 (A:) Triosephosphate isomerase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Thermotoga maritima [TaxId: 2336]
Probab=92.49 E-value=0.5 Score=39.80 Aligned_cols=132 Identities=16% Similarity=0.207 Sum_probs=79.7
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCH-----------HHHHHhhccCC--
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-----------SAIECVLDVVD-- 189 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-----------e~~~~~l~~vD-- 189 (281)
.+++.+.|++++.+. .| +.+.+.+=++.+.++|+.+-+-+.-+... +.+...+..++
T Consensus 80 a~mL~d~G~~~viiGHSERR~~~~E--td~~i~~K~~~al~~gl~pIlCIGE~~~~r~~g~t~~~l~~Ql~~~l~~~~~~ 157 (252)
T d1b9ba_ 80 PLMLQEIGVEYVIVGHSERRRIFKE--DDEFINRKVKAVLEKGMTPILCVGETLEEREKGLTFCVVEKQVREGFYGLDKE 157 (252)
T ss_dssp HHHHHTTTCCEEEESCHHHHHTSCC--CHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHTCHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHhhcchheecchhhhhhhcc--cCHHHHHHHHHHHHCCCeEEEEecccchhhhccchHHHHHHHHHhhhcccchh
Confidence 677889999999885 34 24557778888889999998888532111 11222222222
Q ss_pred ----EEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHH-cCCcEEEEcc
Q 023494 190 ----LVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGS 255 (281)
Q Consensus 190 ----~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGS 255 (281)
+|+ .=+|=+ +|+.-.++-.+. ...+|+.+.+. ..+++|-=.|++|++|+.++.+ -++|++-+|+
T Consensus 158 ~~~~iiI--AYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVGg 235 (252)
T d1b9ba_ 158 EAKRVVI--AYEPVWAIGTGRVATPQQAQEVHAFIRKLLSEMYDEETAGSIRILYGGSIKPDNFLGLIVQKDIDGGLVGG 235 (252)
T ss_dssp HHTTCEE--EECCGGGSSSSCCCCHHHHHHHHHHHHHHHHHHSCHHHHHHSEEEEESSCCHHHHTTTSSSTTCCEEEESG
T ss_pred cccceEE--EeccccccccccCCChHHHHHHHHHHHHHHHHhccccccCcccEEEcCCCCHHHHHHHhcCCCCCEEEeec
Confidence 222 225522 355444443333 33345444321 1136787899999999998754 5799999998
Q ss_pred cccCCCCHHHHH
Q 023494 256 AVFGAKDYAEAI 267 (281)
Q Consensus 256 aIf~a~dp~~~~ 267 (281)
|=.+ ++..+-+
T Consensus 236 ASL~-~~F~~I~ 246 (252)
T d1b9ba_ 236 ASLK-ESFIELA 246 (252)
T ss_dssp GGTS-THHHHHH
T ss_pred hhCC-HHHHHHH
Confidence 8775 4444433
|
| >d1ccwa_ c.23.6.1 (A:) Glutamate mutase, small subunit {Clostridium cochlearium [TaxId: 1494]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Glutamate mutase, small subunit species: Clostridium cochlearium [TaxId: 1494]
Probab=92.43 E-value=0.53 Score=35.80 Aligned_cols=103 Identities=17% Similarity=0.185 Sum_probs=60.5
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC-CCCeEEEec
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIEVDG 233 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~-~~~~I~VDG 233 (281)
+...++..|.++- .+.+++|.+.+...+. .+|.|.+-... +. ....++++.+.+.+++ .+++|.|.|
T Consensus 23 va~~l~~~G~~V~-~LG~~~p~e~iv~a~~~~~~d~v~lS~~~-~~--------~~~~~~~~~~~l~~~~~~~i~iivGG 92 (137)
T d1ccwa_ 23 LDHAFTNAGFNVV-NIGVLSPQELFIKAAIETKADAILVSSLY-GQ--------GEIDCKGLRQKCDEAGLEGILLYVGG 92 (137)
T ss_dssp HHHHHHHTTCEEE-EEEEEECHHHHHHHHHHHTCSEEEEEECS-ST--------HHHHHTTHHHHHHHTTCTTCEEEEEE
T ss_pred HHHHHHHCCCeEE-ecccccCHHHHHHHHHhcCCCEEEEeecc-cc--------chHHHHHHHHHHHHhccCCCEEEEeC
Confidence 3345577787763 3333467776666544 48888764333 21 1222333333333333 367888888
Q ss_pred CCC------hhcHHHHHHcCCcEEEEcccccCC-CCHHHHHHHHHHhcC
Q 023494 234 GVG------PKNAYKVIEAGANALVAGSAVFGA-KDYAEAIKGIKTSKR 275 (281)
Q Consensus 234 GI~------~e~i~~~~~aGAD~~VvGSaIf~a-~dp~~~~~~l~~~~~ 275 (281)
++. ++-.+++.+.|+|. ||.. .++.+.++.+++.++
T Consensus 93 ~~~~~~~~~~~~~~~l~~~Gv~~------if~~~t~~~~~~~~l~~~l~ 135 (137)
T d1ccwa_ 93 NIVVGKQHWPDVEKRFKDMGYDR------VYAPGTPPEVGIADLKKDLN 135 (137)
T ss_dssp SCSSSSCCHHHHHHHHHHTTCSE------ECCTTCCHHHHHHHHHHHHT
T ss_pred CcCCCccccHHHHHHHHHcCCCE------EECCCCCHHHHHHHHHHHhC
Confidence 874 33455778888774 4533 678888888888654
|
| >d1vpxa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermotoga maritima [TaxId: 2336]
Probab=92.38 E-value=1.6 Score=35.69 Aligned_cols=176 Identities=15% Similarity=0.152 Sum_probs=105.3
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeC-cccccc--cCC---HHHHHHcCcCCCCCeeEEEEecChhhHHHHH---HHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNI--TIG---PLVVDALRPVTDLPLDVHLMIVEPEQRVPDF---IKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~--~~G---~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~---~~a 137 (281)
+|-.++++ ++.+.+.|. .+| ++-|.+ ..| .+.++.++.....++-++..-.|+...++.+ .+.
T Consensus 7 lDtad~~~-i~~~~~~g~-------i~GvTTNPsl~~k~g~~~~~~~~~i~~~~~~~is~ev~~~~~~~m~~~a~~l~~~ 78 (218)
T d1vpxa_ 7 LDTANLEE-IKKGVEWGI-------VDGVTTNPTLISKEGAEFKQRVKEICDLVKGPVSAEVVSLDYEGMVREARELAQI 78 (218)
T ss_dssp EECCCHHH-HHHHHHTTC-------CCEEECCC-----------CHHHHHHHHHCSCEEEECSCCSHHHHHHHHHHHHTT
T ss_pred EeCCCHHH-HHHHHhcCC-------cCcCccCHHHHHHcCCCHHHHHHHHHhccCCcchhhhccCcHHHHHHHHHHHhcc
Confidence 56667655 555555553 334 333443 122 2345555555557888888888888766544 445
Q ss_pred CCCE-EEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHH
Q 023494 138 GADI-VSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDL 216 (281)
Q Consensus 138 GAd~-Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~l 216 (281)
+-+. |=++.. .+=.+.++.+++.|+++-+..--+ .-..+......++||... .|.- ........+.++++
T Consensus 79 ~~ni~VKIP~t----~~G~~ai~~L~~~Gi~~n~Tavfs-~~Qa~~Aa~aga~yispy---~gR~-~d~g~d~~~~i~~~ 149 (218)
T d1vpxa_ 79 SEYVVIKIPMT----PDGIKAVKTLSAEGIKTNVTLVFS-PAQAILAAKAGATYVSPF---VGRM-DDLSNDGMRMLGEI 149 (218)
T ss_dssp CTTEEEEEESS----HHHHHHHHHHHHTTCCEEEEEECS-HHHHHHHHHHTCSEEEEB---HHHH-HHTTSCHHHHHHHH
T ss_pred ccceEEEeccc----ccchHHHHHHHHcCCceeeEEecC-HHHHHHHHhcCCCEEEee---ecch-hhhcccchhhHHHH
Confidence 5553 333332 233467888889999998854322 222233333358888542 2310 00111345667888
Q ss_pred HHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEcccccC
Q 023494 217 RRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 217 r~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
++++..++++.+|-+..=-+.+++.++..+|+|++-+.-.+++
T Consensus 150 ~~~~~~~~~~tkil~AS~r~~~~v~~a~~~G~d~iTip~~v~~ 192 (218)
T d1vpxa_ 150 VEIYNNYGFETEIIAASIRHPMHVVEAALMGVDIVTMPFAVLE 192 (218)
T ss_dssp HHHHHHHTCSCEEEEBSCCSHHHHHHHHHHTCSEEEECHHHHH
T ss_pred HHHHhhhcccceeeeeccCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 8888888888888665544599999999999999999977764
|
| >d1ofda2 c.1.4.1 (A:431-1239) Alpha subunit of glutamate synthase, central and FMN domains {Synechocystis sp. [TaxId: 1143]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Alpha subunit of glutamate synthase, central and FMN domains species: Synechocystis sp. [TaxId: 1143]
Probab=92.06 E-value=0.55 Score=45.76 Aligned_cols=127 Identities=18% Similarity=0.254 Sum_probs=82.2
Q ss_pred HHHHHH--HcCCCEEEEccccc--ccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHh-hc-cCCEEEEEeecCCCC
Q 023494 130 RVPDFI--KAGADIVSVHCEQS--STIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECV-LD-VVDLVLIMSVNPGFG 201 (281)
Q Consensus 130 ~i~~~~--~aGAd~Itvh~Ea~--~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~-l~-~vD~IlvmsV~pG~~ 201 (281)
+|..+. .-|.|.++-..... +.+++...+..+|+. |+.+|+=+.....+..+..- .+ .+|+|.+=+-+-|.+
T Consensus 557 ~IA~~R~~~~G~~liSP~~h~diysiedL~q~I~~Lr~~~~~~pv~vKl~~~~g~~~ia~~vaka~aD~I~IdG~eGGTG 636 (809)
T d1ofda2 557 YIAMLRRSKPGVTLISPPPHHDIYSIEDLAQLIYDLHQINPEAQVSVKLVAEIGIGTIAAGVAKANADIIQISGHDGGTG 636 (809)
T ss_dssp HHHHHHTSCTTCCEECCSSCTTCSSHHHHHHHHHHHHHHCTTSEEEEEEECSTTHHHHHHHHHHTTCSEEEEECTTCCCS
T ss_pred HHHhhcCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeeecChHHHHHHHhhcCCCEEEEeCCCCccc
Confidence 455443 45888887654431 345666777777774 67899877666666554443 23 489998855554443
Q ss_pred CCc--cchh----HHHHHHHHHHHhhhcCC--CCeEEEecCCC-hhcHHHHHHcCCcEEEEccc
Q 023494 202 GQS--FIES----QVKKISDLRRMCLEKGV--NPWIEVDGGVG-PKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 202 GQ~--f~~~----~l~kI~~lr~l~~~~~~--~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSa 256 (281)
.-+ +... ...-|.+..+.+..+|+ .+.+.+|||+. ...+-..+..|||.+-.|++
T Consensus 637 Aap~~~~~~~GlP~~~gl~~a~~~L~~~glR~~V~Lia~Ggl~t~~Dv~ka~aLGAD~v~~gt~ 700 (809)
T d1ofda2 637 ASPLSSIKHAGSPWELGVTEVHRVLMENQLRDRVLLRADGGLKTGWDVVMAALMGAEEYGFGSI 700 (809)
T ss_dssp SEEHHHHHHBCCCHHHHHHHHHHHHHHTTCGGGCEEEEESSCCSHHHHHHHHHTTCSEEECSHH
T ss_pred cccHHHHhcCCccHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCHHHHHHHHHhCCCchhHhHH
Confidence 322 1111 12235666666665554 47899999998 66888889999999999976
|
| >d1goxa_ c.1.4.1 (A:) Glycolate oxidase {Spinach (Spinacia oleracea) [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Glycolate oxidase species: Spinach (Spinacia oleracea) [TaxId: 3562]
Probab=91.99 E-value=0.2 Score=43.95 Aligned_cols=113 Identities=12% Similarity=0.217 Sum_probs=67.8
Q ss_pred HHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecC
Q 023494 156 RTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGG 234 (281)
Q Consensus 156 ~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGG 234 (281)
+.++.+++.+....+.- -....+....... .+|-+.+ + +.|.....+-+.+++.+..+++... .+++|-+|||
T Consensus 214 ~~v~~l~~~~~~~~~~k-g~~~~~da~~a~~~g~~~~~v-s-nhggr~ld~~~~~~~~l~~i~~~~~---~~~~iiadGG 287 (359)
T d1goxa_ 214 KDVAWLQTITSLPILVK-GVITAEDARLAVQHGAAGIIV-S-NHGARQLDYVPATIMALEEVVKAAQ---GRIPVFLDGG 287 (359)
T ss_dssp HHHHHHHHHCCSCEEEE-CCCSHHHHHHHHHTTCSEEEE-C-CGGGTSSTTCCCHHHHHHHHHHHTT---TSSCEEEESS
T ss_pred HHHHHHHhhcccceeee-cccchHHHHHHHHccccceec-c-cccccccccccchhhhchhhhhccC---CccceeeccC
Confidence 45677777643332222 2334444444333 4777654 2 3343333444556666666666654 3578999999
Q ss_pred CC-hhcHHHHHHcCCcEEEEccccc-C-----CCCHHHHHHHHHHhc
Q 023494 235 VG-PKNAYKVIEAGANALVAGSAVF-G-----AKDYAEAIKGIKTSK 274 (281)
Q Consensus 235 I~-~e~i~~~~~aGAD~~VvGSaIf-~-----a~dp~~~~~~l~~~~ 274 (281)
|. --.+-+.+..|||.+-+|+.+. . .+-.++.++.|++.+
T Consensus 288 IR~G~Di~KALaLGAd~vgigrp~L~~la~~g~~gv~~~i~~l~~EL 334 (359)
T d1goxa_ 288 VRRGTDVFKALALGAAGVFIGRPVVFSLAAEGEAGVKKVLQMMRDEF 334 (359)
T ss_dssp CCSHHHHHHHHHHTCSEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 99 4478888999999999998754 2 123445556665543
|
| >d1jpma1 c.1.11.2 (A:126-359) L-Ala-D/L-Glu epimerase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: L-Ala-D/L-Glu epimerase species: Bacillus subtilis [TaxId: 1423]
Probab=91.69 E-value=1.4 Score=35.56 Aligned_cols=126 Identities=13% Similarity=0.218 Sum_probs=81.5
Q ss_pred CeeEEEEecChhhHHH---HHHHcCCCEEEEcccccccccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccC--
Q 023494 117 PLDVHLMIVEPEQRVP---DFIKAGADIVSVHCEQSSTIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVV-- 188 (281)
Q Consensus 117 ~idaHLmv~dp~~~i~---~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~v-- 188 (281)
+...-+-+.+|+++++ .+.+.|.+.+=++.-..+.+.-.+.++++|+ .++++.+..|.....+...+++...
T Consensus 6 ~~~~t~~~~~pe~~~~~a~~~~~~G~~~~Kikig~~~~~~d~~~i~~ir~~~g~~~~i~vD~N~~~~~~~a~~~~~~le~ 85 (234)
T d1jpma1 6 ETDYTVSVNSPEEMAADAENYLKQGFQTLKIKVGKDDIATDIARIQEIRKRVGSAVKLRLDANQGWRPKEAVTAIRKMED 85 (234)
T ss_dssp EBCEEECCSCHHHHHHHHHHHHHTTCCEEEEECSSSCHHHHHHHHHHHHHHHGGGSEEEEECTTCSCHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHcCchhhhhhhcccccchHHHHHHHHHHHh
Confidence 4445556678988744 5567899999998632111222244555554 3577788888887777666665532
Q ss_pred ---CEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEcc
Q 023494 189 ---DLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAGS 255 (281)
Q Consensus 189 ---D~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvGS 255 (281)
+...+ .|++.++.++.++++++.. +.+|++|.... ......+++.| +|++...-
T Consensus 86 ~~~~i~~~--------EeP~~~~d~~~~~~l~~~~-----~~pia~gE~~~~~~~~~~~i~~~~~d~v~~d~ 144 (234)
T d1jpma1 86 AGLGIELV--------EQPVHKDDLAGLKKVTDAT-----DTPIMADESVFTPRQAFEVLQTRSADLINIKL 144 (234)
T ss_dssp TTCCEEEE--------ECCSCTTCHHHHHHHHHHC-----SSCEEESTTCSSHHHHHHHHHTTCCSEEEECH
T ss_pred ccCceeee--------cCCccccCHHHHHHhhccc-----cceeecccccccchhhhhhhccCCcCeEEEee
Confidence 22222 4667777777777777654 36898888876 66777777766 88887753
|
| >d1aw1a_ c.1.1.1 (A:) Triosephosphate isomerase {Vibrio marinus [TaxId: 90736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Vibrio marinus [TaxId: 90736]
Probab=91.31 E-value=1.5 Score=36.59 Aligned_cols=135 Identities=19% Similarity=0.327 Sum_probs=79.6
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCH-------H----HHHHhhcc----
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSL-------S----AIECVLDV---- 187 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~i-------e----~~~~~l~~---- 187 (281)
..++.+.|++++.+. .| +.+.+.+-++.+.++|+.+-+-+.-.... + .+...+..
T Consensus 81 a~mlkd~g~~yviiGHSERR~~~~E--td~~i~~Kv~~al~~gl~pIlCVGE~~~~r~~~~~~~vv~~Ql~~~~~~~~~~ 158 (255)
T d1aw1a_ 81 PAMLKEFGATHIIIGHSERREYHAE--SDEFVAKKFAFLKENGLTPVLCIGESDAQNEAGETMAVCARQLDAVINTQGVE 158 (255)
T ss_dssp HHHHGGGTCCEEEESCHHHHHHSCC--CHHHHHHHHHHHHHHTCEEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHCGG
T ss_pred HHHHHhhhcceeeecchhccccccc--cHHHHHHHHHHHHHhccceEEEeccchhhhhcccceeeeehhhhhhhcchhhh
Confidence 567888999998885 34 34567777788889999998887532110 0 11111111
Q ss_pred -CCEEEEEeecCCC---CCCccchhHHHHHH-HHHHHhhhcC----CCCeEEEecCCChhcHHHHHH-cCCcEEEEcccc
Q 023494 188 -VDLVLIMSVNPGF---GGQSFIESQVKKIS-DLRRMCLEKG----VNPWIEVDGGVGPKNAYKVIE-AGANALVAGSAV 257 (281)
Q Consensus 188 -vD~IlvmsV~pG~---~GQ~f~~~~l~kI~-~lr~l~~~~~----~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSaI 257 (281)
.+-++ ..=+|=+ +|+.-.++-.+++. .+|+.+.+.. .+++|-=.|.+|++|+.++.. -++|++-+|++-
T Consensus 159 ~~~~ii-IAYEPvWAIGtg~~a~~~~i~~~~~~i~~~~~~~~~~~~~~i~ilYGGSV~~~N~~~i~~~~~vDG~LVG~AS 237 (255)
T d1aw1a_ 159 ALEGAI-IAYEPIWAIGTGKAATAEDAQRIHAQIRAHIAEKSEAVAKNVVIQYGGSVKPENAAAYFAQPDIDGALVGGAA 237 (255)
T ss_dssp GGTTCE-EEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHTTCHHHHHHCEEEECSCCCTTTHHHHHTSTTCCEEEESGGG
T ss_pred hcccce-EEecchhcccCCcccchhhhhHHHHHHHHhhhcccccccccceEEEcCCCCHhHHHHHhcCCCCCeEEechHh
Confidence 11111 2336633 34444344443332 3333333211 135676699999999999765 789999999998
Q ss_pred cCCCCHHHHHH
Q 023494 258 FGAKDYAEAIK 268 (281)
Q Consensus 258 f~a~dp~~~~~ 268 (281)
.+.++..+-++
T Consensus 238 l~~~~F~~Ii~ 248 (255)
T d1aw1a_ 238 LDAKSFAAIAK 248 (255)
T ss_dssp GSHHHHHHHHH
T ss_pred cCHHHHHHHHH
Confidence 76554444433
|
| >d2d69a1 c.1.14.1 (A:134-424) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=90.82 E-value=0.23 Score=42.88 Aligned_cols=199 Identities=16% Similarity=0.223 Sum_probs=108.3
Q ss_pred ceeeccccCCCCCccccccccchhhhhhccccccCCCCCceEeEEEeccCccCHHHHHHHHHHcCCCeEEEEeeeCcccc
Q 023494 19 GFMLQKTNLNQPSSLSFTRRRIQTIVKASARVDKFSKSDIIVSPSILSANFAKLGEQVKAVELAGCDWIHVDVMDGRFVP 98 (281)
Q Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~pSila~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvp 98 (281)
++--.+-.+..||-.. -+.|+.....|-.+.++=.....+.+|.| ..|...+.+..+.+.+.|++.+++|++
T Consensus 50 D~IKDDe~l~~~~~~p-~~eRv~~~~~a~~~a~~~tG~~~~Ya~Ni-t~~~~~m~~ra~~~~~~G~~~vmi~~~------ 121 (291)
T d2d69a1 50 DLLKDDENFTSFPFNR-FEERVRKLYRVRDRVEAETGETKEYLINI-TGPVNIMEKRAEMVANEGGQYVMIDIV------ 121 (291)
T ss_dssp SEEECCTTCSCBTTBC-HHHHHHHHHHHHHHHHHHHSSCCEEECBC-CSSHHHHHHHHHHHHHHTCCEEEEEHH------
T ss_pred ceecCCccCCCCCCCC-HHHHHHHHHHHHHHHHHHhCCeeEEEEec-cCCHHHHHHHHHHHHHcCCCEEEeccc------
Confidence 4555556665554333 34445555554433333233356788888 478888888899999999999988732
Q ss_pred cccCCHHHHHHcCcC---CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCC
Q 023494 99 NITIGPLVVDALRPV---TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPA 175 (281)
Q Consensus 99 n~~~G~~~I~~ir~~---t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~ 175 (281)
..|...++.+++. .+.++..|--. ...+...... |+.
T Consensus 122 --~~G~~al~~l~~~~~~~~l~ih~Hra~------~g~~~r~~~~----------------------------Gis---- 161 (291)
T d2d69a1 122 --VAGWSALQYMREVTEDLGLAIHAHRAM------HAAFTRNPRH----------------------------GIT---- 161 (291)
T ss_dssp --HHCHHHHHHHHHHHHHHTCEEEEECTT------THHHHSCTTS----------------------------EEC----
T ss_pred --ccchHHHHHHHHhhccccceeeecccc------cceeccCCCC----------------------------ccc----
Confidence 3477888888864 23566665210 0001111111 111
Q ss_pred CCHHHHHHh--hccCCEEEEEeecCCCCC-CccchhHHHHHHHHHHHhhh---cCCCCeEEEecCCChhcHHHH-HHcCC
Q 023494 176 TSLSAIECV--LDVVDLVLIMSVNPGFGG-QSFIESQVKKISDLRRMCLE---KGVNPWIEVDGGVGPKNAYKV-IEAGA 248 (281)
Q Consensus 176 t~ie~~~~~--l~~vD~IlvmsV~pG~~G-Q~f~~~~l~kI~~lr~l~~~---~~~~~~I~VDGGI~~e~i~~~-~~aGA 248 (281)
...+.++ +-.+|.+.+ |+.+| -.+.++...+ +.+.+.+ .-..+.=...||+++.+++++ ...|-
T Consensus 162 --~~v~~kL~RLaGaD~ih~----~~~~Gk~~~~~~e~~~---~~~~~~~~~~~~k~~~Pv~sGG~~~~~vp~~~~~~G~ 232 (291)
T d2d69a1 162 --MLALAKAARMIGVDQIHT----GTAVGKMAGNYEEIKR---INDFLLSKWEHIRPVFPVASGGLHPGLMPELIRLFGK 232 (291)
T ss_dssp --HHHHHHHHHHHTCSEEEC----CCCCSSSCCCHHHHHH---HHHHHHSCCTTCCCCEEEEESSCCGGGHHHHHHHHCS
T ss_pred --HHHHHHHHHHcCCCeeec----CCCCCCCCCCHHHHHH---HHHHhccccccCCCceeccccccchhhhHHHHHHcCC
Confidence 0011222 223566643 33322 1122322222 2222221 001122347999999998866 55688
Q ss_pred cEEE-EcccccCCCC-HHHHHHHHHHhc
Q 023494 249 NALV-AGSAVFGAKD-YAEAIKGIKTSK 274 (281)
Q Consensus 249 D~~V-vGSaIf~a~d-p~~~~~~l~~~~ 274 (281)
|++. +|.+|+..+| +++-++.+|+.+
T Consensus 233 D~il~~GGgi~gHP~G~~aGa~A~RqA~ 260 (291)
T d2d69a1 233 DLVIQAGGGVMGHPDGPRAGAKALRDAI 260 (291)
T ss_dssp CCEEECHHHHHTCTTCHHHHHHHHHHHH
T ss_pred ceEEEcCccccCCCCchHHHHHHHHHHH
Confidence 8765 4688998864 877777777643
|
| >d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: Cobalamin (vitamin B12)-binding domain family: Cobalamin (vitamin B12)-binding domain domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]
Probab=90.80 E-value=1.3 Score=34.80 Aligned_cols=84 Identities=19% Similarity=0.146 Sum_probs=50.6
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhc--cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcC-CCCeEEEec
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLD--VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKG-VNPWIEVDG 233 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~--~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~-~~~~I~VDG 233 (281)
+-..++..|..+ +.+.+.++.+.+..... .+|.|.+-+.. | ..++.++++.+.+++.+ .+++|.+.|
T Consensus 57 va~~l~~~G~eV-i~lg~~~~~e~iv~aa~~~~advI~iSs~~-~--------~~~~~~~~l~~~L~~~g~~~v~VivGG 126 (168)
T d7reqa2 57 IATAYADLGFDV-DVGPLFQTPEETARQAVEADVHVVGVSSLA-G--------GHLTLVPALRKELDKLGRPDILITVGG 126 (168)
T ss_dssp HHHHHHHTTCEE-EECCTTBCHHHHHHHHHHHTCSEEEEEECS-S--------CHHHHHHHHHHHHHHTTCTTSEEEEEE
T ss_pred HHHHHHhCCcce-ecCCCcCcHHHHHHHHHccCCCEEEEecCc-c--------cchHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 345567778776 44555556655554433 48888764332 2 12344455555555544 346675555
Q ss_pred CCChhcHHHHHHcCCcE
Q 023494 234 GVGPKNAYKVIEAGANA 250 (281)
Q Consensus 234 GI~~e~i~~~~~aGAD~ 250 (281)
-|-.+....+.++|+|-
T Consensus 127 ~ip~~d~~~l~~~Gv~~ 143 (168)
T d7reqa2 127 VIPEQDFDELRKDGAVE 143 (168)
T ss_dssp SCCGGGHHHHHHHTEEE
T ss_pred CCCHHHHHHHHhCCCCE
Confidence 56788999999999874
|
| >d1neya_ c.1.1.1 (A:) Triosephosphate isomerase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Triosephosphate isomerase (TIM) family: Triosephosphate isomerase (TIM) domain: Triosephosphate isomerase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.77 E-value=1.7 Score=36.30 Aligned_cols=125 Identities=18% Similarity=0.252 Sum_probs=76.3
Q ss_pred HHHHHHcCCCEEEEc--------ccccccccHHHHHHHHHHcCCcEEEEECCCCCHHH-------------HHHhhccC-
Q 023494 131 VPDFIKAGADIVSVH--------CEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSA-------------IECVLDVV- 188 (281)
Q Consensus 131 i~~~~~aGAd~Itvh--------~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~-------------~~~~l~~v- 188 (281)
.+++.+.|++++.+. .| +.+.+.+=++.+.++|+++-+-+.- +.+. +...++.+
T Consensus 79 a~mLkd~G~~yviIGHSERR~~f~E--td~~i~~K~~~al~~gl~pIlCVGE--tle~r~~~~~~~~~~~Ql~~~l~~~~ 154 (247)
T d1neya_ 79 VDQIKDVGAKYVILGHSERRSYFHE--DDKFIADKTKFALGQGVGVILCIGE--TLEEKKAGKTLDVVERQLNAVLEEVK 154 (247)
T ss_dssp HHHHHHTTCCEEEESCHHHHHTTCC--CHHHHHHHHHHHHHTTCEEEEEECC--CHHHHHTTCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHhhccchhhhcchhhhhhccc--hHHHHHHHHHHHhhcCceEEEEecc--hhhhhccccchhhhHHHHHhhhcccc
Confidence 678899999999985 34 2455667788888999999888752 2211 11222221
Q ss_pred --CEEEEEeecCCC---CCCccchhHHHH-HHHHHHHhhhc-----CCCCeEEEecCCChhcHHHHHH-cCCcEEEEccc
Q 023494 189 --DLVLIMSVNPGF---GGQSFIESQVKK-ISDLRRMCLEK-----GVNPWIEVDGGVGPKNAYKVIE-AGANALVAGSA 256 (281)
Q Consensus 189 --D~IlvmsV~pG~---~GQ~f~~~~l~k-I~~lr~l~~~~-----~~~~~I~VDGGI~~e~i~~~~~-aGAD~~VvGSa 256 (281)
+-+ +..=+|=+ +|+.-.|+..+. .+.+|+.+.+. ..+++|-=.|++|++|+.++.+ -++|++-+|+|
T Consensus 155 ~~~~i-iIAYEPvWAIGtG~~a~~~~i~~~~~~Ir~~l~~~~~~~~~~~i~iLYGGSV~~~N~~~i~~~~~iDG~LVGgA 233 (247)
T d1neya_ 155 DFTNV-VVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGA 233 (247)
T ss_dssp CCTTE-EEEECCGGGTTTSCCCCHHHHHHHHHHHHHHHHHHHCHHHHHHCCEEEESSCCTTTGGGGTTCTTCCEEEESGG
T ss_pred cccce-EEEecchhcccCCcccChhhhhhhhHHHHHHHHHhhhhhhcccCcEEEeCCCCHHHHHHHhcCCCCCeEEeehH
Confidence 111 22336632 355444444333 33344433221 1135677799999999998766 56899999988
Q ss_pred ccCC
Q 023494 257 VFGA 260 (281)
Q Consensus 257 If~a 260 (281)
=.+.
T Consensus 234 SL~~ 237 (247)
T d1neya_ 234 SLKP 237 (247)
T ss_dssp GGST
T ss_pred hCCh
Confidence 7653
|
| >d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId: 5724]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Tritrichomonas foetus [TaxId: 5724]
Probab=90.11 E-value=1.2 Score=39.11 Aligned_cols=113 Identities=17% Similarity=0.182 Sum_probs=70.3
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhc-cCCEEEEEeecCCCCCCccchh
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIES 208 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~ 208 (281)
....+.+.|.=.+ +|-.. +.++..+.....+.....++.........++++.+.+ .+|++.+= +.-| ....
T Consensus 66 mA~~la~~Gglgv-ihR~~-~ie~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ag~d~i~ID-vAhG-----~~~~ 137 (362)
T d1pvna1 66 MAIALAREGGISF-IFGSQ-SIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCID-SSDG-----FSEW 137 (362)
T ss_dssp HHHHHHHTTCEEE-ECCSS-CHHHHHHHHHHHHTCCCCCEEEECSSSHHHHHHHHHHHTCSEEEEC-CSCC-----CBHH
T ss_pred HHHHHHHCCCEEE-EeecC-CHHHHHHHhhhhhhcccccccccchhhhHHHHHHHhhcCceEEeec-hhcc-----chhH
Confidence 4445667774333 44332 2344445555556666666777766666667766655 48887652 2212 3345
Q ss_pred HHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCCcEEEEc
Q 023494 209 QVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGANALVAG 254 (281)
Q Consensus 209 ~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGAD~~VvG 254 (281)
..+.++.+++.... +.+| +.|.| |.|..+.+.++|||++-||
T Consensus 138 v~~~i~~ir~~~~~---~~~I-iAGNVaT~e~~~~L~~aGaD~vkVG 180 (362)
T d1pvna1 138 QKITIGWIREKYGD---KVKV-GAGNIVDGEGFRYLADAGADFIKIG 180 (362)
T ss_dssp HHHHHHHHHHHHGG---GSCE-EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHhhcc---ceee-ecccccCHHHHHHHHHhCCcEEEec
Confidence 66677777665533 2456 45555 5999999999999999999
|
| >d1zfja1 c.1.5.1 (A:2-94,A:221-492) Inosine monophosphate dehydrogenase (IMPDH) {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.06 E-value=1.7 Score=38.28 Aligned_cols=112 Identities=16% Similarity=0.308 Sum_probs=67.6
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc-C-CcEEEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCcc
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL-G-AKAGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~-G-~k~Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f 205 (281)
....+.++|. .-.+|-+.. .++..+..+..++. + ..++.++... ...+++..+++ .+|+|.+ .+- +..
T Consensus 60 mA~~ls~~Gg-lgvlhr~~~-~~e~~~~~~~~~~~~~~~~v~aavGv~~~~~er~~~l~~agvd~ivI-D~A-----~G~ 131 (365)
T d1zfja1 60 MAIAIARAGG-LGVIHKNMS-ITEQAEEVRKVKRSEGRLLVAAAVGVTSDTFERAEALFEAGADAIVI-DTA-----HGH 131 (365)
T ss_dssp HHHHHHHTTC-EEEECCSSC-HHHHHHHHHHHHHHTSCBCCEEEECSSTTHHHHHHHHHHHTCSEEEE-CCS-----CTT
T ss_pred HHHHHHHCCC-ceEEcCccC-HHHHHHHhhhhhhccCceEEEEEeccCchHHHHHHHHHHcCCCEEEE-ECC-----ccc
Confidence 4445667663 334576642 33334444444433 2 3467776533 34466666665 4898865 221 223
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.....+.++++|+..+ +.+| +.|+|- .+.+..+.++|||++.||
T Consensus 132 s~~~~~~i~~ik~~~~----~~~i-IaGNV~T~e~a~~L~~aGaD~VkVG 176 (365)
T d1zfja1 132 SAGVLRKIAEIRAHFP----NRTL-IAGNIATAEGARALYDAGVDVVKVG 176 (365)
T ss_dssp CHHHHHHHHHHHHHCS----SSCE-EEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred ccchhHHHHHHHhhCC----Ccce-eecccccHHHHHHHHhcCCceEEee
Confidence 3455666777776643 3456 567665 899999999999999998
|
| >d1p4ca_ c.1.4.1 (A:) Membrane-associated (S)-mandelate dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Membrane-associated (S)-mandelate dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=89.77 E-value=0.2 Score=43.48 Aligned_cols=112 Identities=20% Similarity=0.209 Sum_probs=63.3
Q ss_pred HHHHHHHHHcCCcEEEEECCCCCHHHHHHh-hccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEec
Q 023494 155 HRTLNQIKDLGAKAGVVLNPATSLSAIECV-LDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDG 233 (281)
Q Consensus 155 ~~~l~~ik~~G~k~Glai~p~t~ie~~~~~-l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDG 233 (281)
.+.++.+++.+....+.-.- +..+..... ...+|.+.+ +-+.| ......+.+.+-+.+++... +.+|-+||
T Consensus 211 ~~~i~~l~~~~~~~i~~kgv-~~~~~~~~a~~~g~~~~~~-s~~gg-~~~~~~~~~~~~l~~i~~~~-----~~~viasG 282 (353)
T d1p4ca_ 211 WEALRWLRDLWPHKLLVKGL-LSAEDADRCIAEGADGVIL-SNHGG-RQLDCAISPMEVLAQSVAKT-----GKPVLIDS 282 (353)
T ss_dssp HHHHHHHHHHCCSEEEEEEE-CCHHHHHHHHHTTCSEEEE-CCGGG-TSCTTCCCGGGTHHHHHHHH-----CSCEEECS
T ss_pred HHHHHHHHhccccchhhhcc-hhhhhHHHHHhcCCchhhh-ccccc-ccccccccchhcccchhccc-----ccceeecC
Confidence 35677888877554443332 344444433 335787765 33322 22223333333333333322 35788999
Q ss_pred CCC-hhcHHHHHHcCCcEEEEccccc-C-C----CCHHHHHHHHHHhc
Q 023494 234 GVG-PKNAYKVIEAGANALVAGSAVF-G-A----KDYAEAIKGIKTSK 274 (281)
Q Consensus 234 GI~-~e~i~~~~~aGAD~~VvGSaIf-~-a----~dp~~~~~~l~~~~ 274 (281)
||+ .-.+-+.+..|||.+=+|+.+. . + +-.++.++.|++.+
T Consensus 283 GIR~G~Dv~KALaLGAd~vgigrp~L~~l~~~G~egv~~~l~~l~~El 330 (353)
T d1p4ca_ 283 GFRRGSDIVKALALGAEAVLLGRATLYGLAARGETGVDEVLTLLKADI 330 (353)
T ss_dssp SCCSHHHHHHHHHTTCSCEEESHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCchHHHHHHHHcCCCEEEEcHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 999 5578888999999999998754 2 1 22344555555543
|
| >d1jr1a1 c.1.5.1 (A:17-112,A:233-514) Inosine monophosphate dehydrogenase (IMPDH) {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=89.13 E-value=1.1 Score=39.87 Aligned_cols=112 Identities=18% Similarity=0.193 Sum_probs=64.0
Q ss_pred HHHHHHHcCCCEEEEcccccccccHHHHHHHHHHc------------CCcEEEEECCCCCH-HHHHHhh-ccCCEEEEEe
Q 023494 130 RVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDL------------GAKAGVVLNPATSL-SAIECVL-DVVDLVLIMS 195 (281)
Q Consensus 130 ~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~------------G~k~Glai~p~t~i-e~~~~~l-~~vD~Ilvms 195 (281)
....+.++|.=+ .+|-.. +.++..+.++.+++. .+.++.++.+.... +....+. ..+|++.+-.
T Consensus 62 mA~als~~GGLG-vLhr~~-~~e~~~~ev~~v~~~~~~p~~~~~~~~~l~v~aavg~~~~~~~~~~~l~~agv~vi~id~ 139 (378)
T d1jr1a1 62 MAIAMALTGGIG-FIHHNC-TPEFQANEVRKVKKYEQYPLASKDAKKQLLCGAAIGTHEDDKYRLDLLALAGVDVVVLDS 139 (378)
T ss_dssp HHHHHHHHTCEE-EECCSS-CHHHHHHHHHHHHTSCCCTTCCBCTTSCBCCEEEECSSTHHHHHHHHHHHHTCCEEEECC
T ss_pred HHHHHHHCCCee-EEcCCC-CHHHHHHHHheehhhhhCcccccccccCEEEEEEeccCHHHHHHHHHHHhhccceEeeec
Confidence 444566776433 335432 223333344444432 23467788665333 3333333 2488886532
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEc
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAG 254 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvG 254 (281)
.+ .......+.++++++..+ +.+| +.|++. .+.+..+.++|||++.+|
T Consensus 140 a~------g~~~~~~~~i~~ik~~~~----~~~i-IaGnVaT~e~a~~L~~aGAD~VkVG 188 (378)
T d1jr1a1 140 SQ------GNSIFQINMIKYMKEKYP----NLQV-IGGNVVTAAQAKNLIDAGVDALRVG 188 (378)
T ss_dssp SS------CCSHHHHHHHHHHHHHST----TCEE-EEEEECSHHHHHHHHHHTCSEEEEC
T ss_pred cC------ccchhhHHHHHHHHHHCC----CCce-eecccccHHHHHHHHHhCCCEEeec
Confidence 22 233455666777776643 3455 567766 888999999999999998
|
| >d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: HMGL-like domain: Transcarboxylase 5S subunit, N-terminal domain species: Propionibacterium freudenreichii shermanii [TaxId: 1752]
Probab=89.11 E-value=5.2 Score=33.03 Aligned_cols=167 Identities=14% Similarity=0.129 Sum_probs=93.9
Q ss_pred HHHHHHHHcCCCeEEEEeeeCcccc-----cc-cCC-HHHHHHcCcC-CCCCeeEEEEecC-------hhh----HHHHH
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFVP-----NI-TIG-PLVVDALRPV-TDLPLDVHLMIVE-------PEQ----RVPDF 134 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fvp-----n~-~~G-~~~I~~ir~~-t~~~idaHLmv~d-------p~~----~i~~~ 134 (281)
+.++.|.++|+++|++ |.|+. .+ ... ......+++. .+..+.+...-.+ |.. .+...
T Consensus 37 ~i~~~L~~~Gv~~IEv----g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (303)
T d1rqba2 37 GACADIDAAGYWSVEC----WGGATYDSCIRFLNEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYNDEVVDRFVDKS 112 (303)
T ss_dssp GGHHHHHHTTCSEEEE----EETTHHHHHHHTSCCCHHHHHHHHHHHCTTSCEEEEECGGGTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCEEEe----CCCcChHHHHHHhcCchHHHHHHHHhhhhhHHHHHHhcccccccccccchhhhHHHHHHH
Confidence 3467788999999987 44431 01 111 1223333332 3344444332111 111 23445
Q ss_pred HHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEEC-CC---CCHHHHHHhh----c-cCCEEEEEeecCCCCCCcc
Q 023494 135 IKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLN-PA---TSLSAIECVL----D-VVDLVLIMSVNPGFGGQSF 205 (281)
Q Consensus 135 ~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~-p~---t~ie~~~~~l----~-~vD~IlvmsV~pG~~GQ~f 205 (281)
.+.+.+.+..-......+.....++.+++.|..+-..+. +. .+.+.+.++. + .+|.|.+- + ..|...
T Consensus 113 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~i~l~--D--T~G~~~ 188 (303)
T d1rqba2 113 AENGMDVFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSIALK--D--MAALLK 188 (303)
T ss_dssp HHTTCCEEEECCTTCCTHHHHHHHHHHHHTTCEEEEEEECCCSTTCCHHHHHHHHHHHHHTTCSEEEEE--E--TTCCCC
T ss_pred HHhhhhHHhhhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCCCCCCHHHHHHHHHHHHhcCCcEEeec--C--ccchhh
Confidence 667888776654322245677888889999988755443 22 2344433332 2 27877653 2 224433
Q ss_pred chhHHHHHHHHHHHhhhcCCCCeEEE----ecCCChhcHHHHHHcCCcEE
Q 023494 206 IESQVKKISDLRRMCLEKGVNPWIEV----DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 206 ~~~~l~kI~~lr~l~~~~~~~~~I~V----DGGI~~e~i~~~~~aGAD~~ 251 (281)
..++.+.++.+++.+. .+++|.+ |-|....|.-..+++|++.|
T Consensus 189 P~~v~~li~~l~~~~~---~~i~i~~H~Hnd~Gla~AN~laA~~aG~~~i 235 (303)
T d1rqba2 189 PQPAYDIIKAIKDTYG---QKTQINLHCHSTTGVTEVSLMKAIEAGVDVV 235 (303)
T ss_dssp HHHHHHHHHHHHHHHC---TTCCEEEEEBCTTSCHHHHHHHHHHTTCSEE
T ss_pred hHHHHHHHHHHHhhcC---CcccceeccCchHHHHHHHHHHHHHcCCCEE
Confidence 3444556777776653 2456666 88888889999999999975
|
| >d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Dihydropteroate synthetase-like family: Methyltetrahydrofolate-utiluzing methyltransferases domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.08 E-value=2.4 Score=35.56 Aligned_cols=96 Identities=22% Similarity=0.303 Sum_probs=58.9
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCH----HHHHHcCcCCCCCeeEEEEecChhhHHHHHHHc--CC
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGP----LVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKA--GA 139 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~----~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~a--GA 139 (281)
.-|+....+..+...+.|+++| ||-=| +|.. ... .+++.++..++.|+-+ =+.+|. .++...++ |+
T Consensus 36 ~~d~d~~~~~A~~qv~~GA~iL--DIn~~--~~~~-~e~~~m~~li~~l~~~~d~PlsI--DT~~~~-v~eaaLk~~~G~ 107 (260)
T d3bofa1 36 KGNEEIVIKEAKTQVEKGAEVL--DVNFG--IESQ-IDVRYVEKIVQTLPYVSNVPLSL--DIQNVD-LTERALRAYPGR 107 (260)
T ss_dssp TTCSHHHHHHHHHHHHTTCSEE--EEECS--SGGG-SCHHHHHHHHHHHHHHTCSCEEE--ECCCHH-HHHHHHHHCSSC
T ss_pred cCCHHHHHHHHHHHHHcCCCEE--EeecC--Cchh-hhHHHHHHHHHHHHhcCCCCccc--cCCCHH-HHHHHHHHhcCc
Confidence 3466556666666777899996 76333 2322 233 3455556667777444 234544 56777776 98
Q ss_pred CEEE-EcccccccccHHHHHHHHHHcCCcEEEEE
Q 023494 140 DIVS-VHCEQSSTIHLHRTLNQIKDLGAKAGVVL 172 (281)
Q Consensus 140 d~It-vh~Ea~~~~~i~~~l~~ik~~G~k~Glai 172 (281)
++|- +-.| .....+.+..++++|..+.+..
T Consensus 108 ~iINsis~e---~~~~~~~~~l~~~yga~vI~l~ 138 (260)
T d3bofa1 108 SLFNSAKVD---EEELEMKINLLKKYGGTLIVLL 138 (260)
T ss_dssp CEEEEEESC---HHHHHHHHHHHHHHCCEEEEES
T ss_pred ceEeecccc---cchHHHHHHHHHhcCCCEEEEe
Confidence 8774 3344 2245667899999999876543
|
| >d1ytda1 c.1.17.1 (A:120-389) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Nicotinate phosphoribosyltransferase Ta1145 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=88.77 E-value=0.26 Score=42.04 Aligned_cols=49 Identities=31% Similarity=0.389 Sum_probs=41.9
Q ss_pred HHHHHHHHhhhcCC-CCeEEEecCCChhcHHHHHHcCCcEEEEcccccCC
Q 023494 212 KISDLRRMCLEKGV-NPWIEVDGGVGPKNAYKVIEAGANALVAGSAVFGA 260 (281)
Q Consensus 212 kI~~lr~l~~~~~~-~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSaIf~a 260 (281)
-+++.|+.+++.|+ ++.|.+.+|++++.|.++.++++|.|=+|+.+...
T Consensus 130 l~~~~r~~Ld~~G~~~vkIi~S~glde~~I~~l~~~~~d~fGvGt~Lvt~ 179 (270)
T d1ytda1 130 LIREVRWELALRGRSDIKIMVSGGLDENTVKKLREAGAEAFGVGTSISSA 179 (270)
T ss_dssp HHHHHHHHHHHTTCTTSEEEEESSCCHHHHHHHHHHTCCEEEECHHHHTC
T ss_pred HHHHHHHhcCccCCCcceEEECCCCCHHHHHHHHhcCCceEeeccccccC
Confidence 45677888887765 56799999999999999999999999999998654
|
| >d1eepa_ c.1.5.1 (A:) Inosine monophosphate dehydrogenase (IMPDH) {Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Lyme disease spirochete (Borrelia burgdorferi) [TaxId: 139]
Probab=88.39 E-value=2 Score=38.02 Aligned_cols=78 Identities=21% Similarity=0.315 Sum_probs=51.8
Q ss_pred cEEEEECCC-CCHHHHHHhhc-cCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHH
Q 023494 167 KAGVVLNPA-TSLSAIECVLD-VVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVI 244 (281)
Q Consensus 167 k~Glai~p~-t~ie~~~~~l~-~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~ 244 (281)
.+|.++... ...++...+.+ .+|++.+=+-| | ....+++-++++++..+ +.+|.+.+=.+.+....+.
T Consensus 141 ~vgaAvg~~~~~~~ra~~L~~aG~D~ivID~Ah----G--~s~~~~~~i~~ik~~~~----~v~vIaGNV~T~e~a~~L~ 210 (388)
T d1eepa_ 141 RVGAAVSIDIDTIERVEELVKAHVDILVIDSAH----G--HSTRIIELIKKIKTKYP----NLDLIAGNIVTKEAALDLI 210 (388)
T ss_dssp CCEEEECSCTTHHHHHHHHHHTTCSEEEECCSC----C--SSHHHHHHHHHHHHHCT----TCEEEEEEECSHHHHHHHH
T ss_pred hhhhccCCCHHHHHHHHHHHhhccceeeeeccc----c--chHHHHHHHHHHHHHCC----CCceeeccccCHHHHHHHH
Confidence 356666533 34567777665 48998763222 2 33455677777776643 4677444445588999999
Q ss_pred HcCCcEEEEc
Q 023494 245 EAGANALVAG 254 (281)
Q Consensus 245 ~aGAD~~VvG 254 (281)
++|||.+-||
T Consensus 211 ~~GaD~VkVG 220 (388)
T d1eepa_ 211 SVGADCLKVG 220 (388)
T ss_dssp TTTCSEEEEC
T ss_pred hcCCCeeeec
Confidence 9999999998
|
| >d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=87.72 E-value=3.7 Score=33.77 Aligned_cols=113 Identities=19% Similarity=0.212 Sum_probs=65.3
Q ss_pred HHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHcCCcEEEEECCC-CCHHHHHHhhc-----cCCEEEEEeecCC
Q 023494 131 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDLGAKAGVVLNPA-TSLSAIECVLD-----VVDLVLIMSVNPG 199 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~G~k~Glai~p~-t~ie~~~~~l~-----~vD~IlvmsV~pG 199 (281)
++.+.+.|||=|-+...-. ..+++.+.++.++..|..+=+.+... -+.+.+..... .+|+|= | -.|
T Consensus 94 ~~~Ai~~GAdEID~Vin~~~~~~~~~~ev~~~~~~~~~~g~~lKVIlEt~~L~~~~i~~a~~~a~~aGadFVK--T-STG 170 (234)
T d1n7ka_ 94 AQTVLEAGATELDVVPHLSLGPEAVYREVSGIVKLAKSYGAVVKVILEAPLWDDKTLSLLVDSSRRAGADIVK--T-STG 170 (234)
T ss_dssp HHHHHHHTCCEEEECCCGGGCHHHHHHHHHHHHHHHHHTTCEEEEECCGGGSCHHHHHHHHHHHHHTTCSEEE--S-CCS
T ss_pred HHHHHHcCCCeEEEEechhhhhhhhHHHHHHHHHHHhccCceEEEEEeccccchHHHHHHHHHHHHhhhhhee--e-ccc
Confidence 4567788999887764311 12246677777788786555544322 12233333322 378874 2 246
Q ss_pred CCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 200 FGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 200 ~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
|....-.+ ..+..+.+.... .++.|-+.|||+ .+++..++++||+-+
T Consensus 171 ~~~~gat~---~~~~~l~~~~~~--~~vgIKasGGIrt~~~a~~~i~aGa~rI 218 (234)
T d1n7ka_ 171 VYTKGGDP---VTVFRLASLAKP--LGMGVKASGGIRSGIDAVLAVGAGADII 218 (234)
T ss_dssp SSCCCCSH---HHHHHHHHHHGG--GTCEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred ccCCCCCH---HHHHHHHHHhcC--CCCcEEeeCCcCCHHHHHHHHHccCcee
Confidence 53211123 333344443322 246788999999 689999999999953
|
| >d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: KguE-like domain: Hypothetical protein PA2260 species: Pseudomonas aeruginosa [TaxId: 287]
Probab=87.46 E-value=0.72 Score=37.65 Aligned_cols=203 Identities=11% Similarity=0.014 Sum_probs=107.8
Q ss_pred eEeEEEeccCcc---CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEec----------
Q 023494 59 IVSPSILSANFA---KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIV---------- 125 (281)
Q Consensus 59 ~i~pSila~D~~---~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~---------- 125 (281)
-|+.+-+.+|.. .....++.+.+.|.|.|++. +.+.+. ......++++-+..++.+..+....
T Consensus 5 ~i~l~~fg~~~v~~~~~~~~l~~~a~~G~dgIEi~---~~~~~~-~~~~~~l~~~~~~~GL~i~~~~~~~~~~~~~~~~~ 80 (250)
T d1yx1a1 5 SISLSSYGADLVRSRGQASFLPLLAMAGAQRVELR---EELFAG-PPDTEALTAAIQLQGLECVFSSPLELWREDGQLNP 80 (250)
T ss_dssp EEEGGGGCHHHHHHHCGGGGHHHHHHHTCSEEEEE---GGGCSS-CCCHHHHHHHHHHTTCEEEEEEEEEEECTTSSBCT
T ss_pred EEEhhhcccccccccCHHHHHHHHHHhCCCEEEEe---cccCCC-cchHHHHHHHHHHcCCEEEEecccccccCchhhHH
Confidence 344444444443 23344788889999999874 222221 2234444444333566665443321
Q ss_pred ChhhHHHHHHHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEEEECCCC---CHHHHHHhhcc----CCEEEEEeec
Q 023494 126 EPEQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGVVLNPAT---SLSAIECVLDV----VDLVLIMSVN 197 (281)
Q Consensus 126 dp~~~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Glai~p~t---~ie~~~~~l~~----vD~IlvmsV~ 197 (281)
+-.++++.+.+.|+..|.++.-.. ..+.+.++.+.++++|+++++-..+.+ ..+....+... -..|-+ ..+
T Consensus 81 ~~~~~i~~A~~LG~~~v~~~~g~~~~~~~l~~l~~~a~~~Gv~l~iE~h~~~~~~~~~~~~~~~~~~~~~~p~vg~-~~D 159 (250)
T d1yx1a1 81 ELEPTLRRAEACGAGWLKVSLGLLPEQPDLAALGRRLARHGLQLLVENDQTPQGGRIEVLERFFRLAERQQLDLAM-TFD 159 (250)
T ss_dssp THHHHHHHHHHTTCSEEEEEEECCCSSCCHHHHHHHHTTSSCEEEEECCSSHHHHCHHHHHHHHHHHHHTTCSEEE-EEE
T ss_pred HHHHHHHHHHHhCCCEEEEeecccchhHHHHHHHHHHHHcCCEEEEEeCCCcccCCHHHHHHHHHHhhccCCcccc-ccc
Confidence 113567788899999999885432 245689999999999999999876543 22333333221 123322 234
Q ss_pred CCC---CCCccchhHHHHHHHHHHHhhh--------cCCCCeE-EEecCCChh-cHHHHHHcCCcEEEEcccccCCCCHH
Q 023494 198 PGF---GGQSFIESQVKKISDLRRMCLE--------KGVNPWI-EVDGGVGPK-NAYKVIEAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 198 pG~---~GQ~f~~~~l~kI~~lr~l~~~--------~~~~~~I-~VDGGI~~e-~i~~~~~aGAD~~VvGSaIf~a~dp~ 264 (281)
+|- .|. ...+-++.+...+.. ....-.. .-+|.+... -.+.+.+.|.|+.+.=-.-...+|+.
T Consensus 160 ~~h~~~~g~----dp~~~~~~~~~~i~~vHvkD~~~~~~~~~~~~g~G~~d~~~~~~~L~~~~~d~~~~iE~p~~~~d~~ 235 (250)
T d1yx1a1 160 IGNWRWQEQ----AADEAALRLGRYVGYVHCKAVIRNRDGKLVAVPPSAADLQYWQRLLQHFPEGVARAIEYPLQGDDLL 235 (250)
T ss_dssp TTGGGGGTC----CHHHHHHHHGGGEEEEEECEEEECTTSCEEEECCCHHHHHHHHHHHTTSCTTCEEEECSCCCSSCHH
T ss_pred hHHHHHcCC----cHHHHHHHhcCCEEEEEeccccCCCCCceecCCCCCCCHHHHHHHHHhCCCCceEEEEecCCCCChh
Confidence 442 221 123334444433320 0000111 124555543 34456778989877665434456776
Q ss_pred HHHHHH
Q 023494 265 EAIKGI 270 (281)
Q Consensus 265 ~~~~~l 270 (281)
+.+++=
T Consensus 236 ~~~r~~ 241 (250)
T d1yx1a1 236 SLSRRH 241 (250)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655543
|
| >d1zcca1 c.1.18.3 (A:1-240) Glycerophosphodiester phosphodiesterase UgpQ {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: PLC-like phosphodiesterases family: Glycerophosphoryl diester phosphodiesterase domain: Glycerophosphodiester phosphodiesterase UgpQ species: Agrobacterium tumefaciens [TaxId: 358]
Probab=87.32 E-value=5.8 Score=31.49 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=92.0
Q ss_pred cCHHHHHHHHHHcCCCeEEEEee---eCcccccc---------------cCCHHHHHHcC--------------------
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVM---DGRFVPNI---------------TIGPLVVDALR-------------------- 111 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDIm---DG~fvpn~---------------~~G~~~I~~ir-------------------- 111 (281)
-|...+++.+.+.|+|++++||. ||..|-.. .+....++.++
T Consensus 16 ENT~~a~~~A~~~G~~~iE~Dv~~TkDg~~Vv~HD~~l~r~t~~~~~v~~~t~~el~~l~~~~~~~~~~~~~~IptL~ev 95 (240)
T d1zcca1 16 ENTFAAADLALQQGADYIELDVRESADGVLYVIHDETLDRTTNGTGPVGHMLSSEIDTLDAGGWFDDRFKGAIVPRLDAY 95 (240)
T ss_dssp SSSHHHHHHHHHTTCSEEEEEEEECTTCCEEECSSSBTTTTSSCCSBSTTSCHHHHTTSCSSTTTCGGGTTCCCCBHHHH
T ss_pred ccHHHHHHHHHHcCCCEEEEEEEEecCCCEEEeccccccccccccccHHHhhHHHHHHhhccCcCccccCCCcCChHHHh
Confidence 46677888888999999999975 44322110 11112222211
Q ss_pred --cC-CCCCeeEEEEecChhhHHHHHHHcC-CCEEEEcccccccccHHHHHHHHHHc--CCcEEEEECCCCCHHHHHHhh
Q 023494 112 --PV-TDLPLDVHLMIVEPEQRVPDFIKAG-ADIVSVHCEQSSTIHLHRTLNQIKDL--GAKAGVVLNPATSLSAIECVL 185 (281)
Q Consensus 112 --~~-t~~~idaHLmv~dp~~~i~~~~~aG-Ad~Itvh~Ea~~~~~i~~~l~~ik~~--G~k~Glai~p~t~ie~~~~~l 185 (281)
.. .+..+.+.++..++....+.+.+.| .+.+.+.... .+.++.+|+. .++.|+.+....+.. .....
T Consensus 96 l~~~~~~~~l~iEiK~~~~~~v~~l~~~~~~~~~v~~~Sf~------~~~l~~~~~~~P~~~~~~~~~~~~~~~-~~~~~ 168 (240)
T d1zcca1 96 LEHLRGRAGVYIELKYCDPAKVAALVRHLGMVRDTFYFSFS------EEMRQGLQSIAPEFRRMMTLDIAKSPS-LVGAV 168 (240)
T ss_dssp HHHHTTTCEEEEEEEESCHHHHHHHHHHHTCSTTEEEECSC------HHHHHHHHHHCTTSEEEEEHHHHSSTH-HHHHT
T ss_pred hhcccccceeEEEEccCcchhhhHHHHHHHhhccccccccc------HHHHHHHHHhhhccceEEeecccccch-hHHHH
Confidence 00 1345777888888776666666666 3567666552 1345666665 567777653222221 12222
Q ss_pred ccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCCh-hcHHHHHHcCCcEEEEcccccCCCCHH
Q 023494 186 DVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGP-KNAYKVIEAGANALVAGSAVFGAKDYA 264 (281)
Q Consensus 186 ~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~-e~i~~~~~aGAD~~VvGSaIf~a~dp~ 264 (281)
.....+.+. + ..-..+. .++++++ +| .++.+=...+. +..+.+.+.|+|+++ .+.|
T Consensus 169 ~~~~~~~~~----~--~~~~~~~---~v~~~~~----~G--l~v~~wTvnd~~~~~~~l~~~gVdgI~-------TD~P- 225 (240)
T d1zcca1 169 HHASIIEIT----P--AQMRRPG---IIEASRK----AG--LEIMVYYGGDDMAVHREIATSDVDYIN-------LDRP- 225 (240)
T ss_dssp TCCSEEEEC----H--HHHHSHH---HHHHHHH----HT--CEEEEECCCCCHHHHHHHHHSSCSEEE-------ESCH-
T ss_pred hcccccccc----h--hhhCCHH---HHHHHHH----CC--CEEEEEccCCHHHHHHHHHHcCCCEEE-------eCcH-
Confidence 233333220 0 0001122 2333333 33 45544344443 456778999999997 3566
Q ss_pred HHHHHHHHhc
Q 023494 265 EAIKGIKTSK 274 (281)
Q Consensus 265 ~~~~~l~~~~ 274 (281)
+.+.++++.+
T Consensus 226 ~l~~~vr~~~ 235 (240)
T d1zcca1 226 DLFAAVRSGM 235 (240)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666643
|
| >d1wx0a1 c.1.10.1 (A:1-211) Decameric fructose-6-phosphate aldolase/transaldolase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Thermus thermophilus [TaxId: 274]
Probab=87.00 E-value=3.9 Score=32.81 Aligned_cols=136 Identities=15% Similarity=0.115 Sum_probs=84.2
Q ss_pred CCCCeeEEEEecChhhHHHHH---HHcCCCEE-EEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCC
Q 023494 114 TDLPLDVHLMIVEPEQRVPDF---IKAGADIV-SVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVD 189 (281)
Q Consensus 114 t~~~idaHLmv~dp~~~i~~~---~~aGAd~I-tvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD 189 (281)
.+.++.+.+.-.+++..++.. ...+-+.+ =++. +.+=-+.++.+++.|+++-+..-- +.-+.+......++
T Consensus 59 ~~~~is~ev~~~~~e~m~~~a~~l~~~~~ni~iKIP~----t~~G~~a~~~L~~~Gi~vn~T~vf-s~~Qa~~Aa~aga~ 133 (211)
T d1wx0a1 59 VGGPVSAEVTALEAEAMVAEGRRLAAIHPNIVVKLPT----TEEGLKACKRLSAEGIKVNMTLIF-SANQALLAARAGAS 133 (211)
T ss_dssp HTSCEEEECCCSSHHHHHHHHHHHHHHCTTEEEEEES----SHHHHHHHHHHHHTTCCEEEEEEC-SHHHHHHHHHTTCS
T ss_pred ccCCeEEEEeeCcHHHHHHHHHHHhhcCCceEEEecc----chhhhHHHHHHhhcCCceeEEEec-CHHHHHHHHHcCCC
Confidence 345666666667776555543 33444433 2332 223346778889999999885532 22233333344688
Q ss_pred EEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 190 LVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 190 ~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
||..+ .|.-. ...-...+.++++++++..++++.+|-+ ..++ .+++.++.++|+|++-+.-.+++
T Consensus 134 yispy---vgR~~-d~g~d~~~~~~~~~~~~~~~~~~tkil~-AS~R~~~~~~~~~~~G~d~vTi~~~v~~ 199 (211)
T d1wx0a1 134 YVSPF---LGRVD-DISWDGGELLREIVEMIQVQDLPVKVIA-ASIRHPRHVTEAALLGADIATMPHAVFK 199 (211)
T ss_dssp EEEEB---HHHHH-HTTSCHHHHHHHHHHHHHHTTCSCEEEE-BCCCSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred EEEEe---eecch-hccccchhHHHHHHHHHHhccccceeEe-eecCCHHHHHHHHHcCCCEEEeCHHHHH
Confidence 88653 23210 0111235667778888877777888854 6665 88999999999999999877664
|
| >d1tzza1 c.1.11.2 (A:1146-1392) Hypothetical protein Bll6730 {Bradyrhizobium japonicum [TaxId: 375]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Hypothetical protein Bll6730 species: Bradyrhizobium japonicum [TaxId: 375]
Probab=86.81 E-value=0.85 Score=37.41 Aligned_cols=122 Identities=9% Similarity=0.006 Sum_probs=75.1
Q ss_pred cChhhH---HHHHHHcCCCEEEEcccccccccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecC
Q 023494 125 VEPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNP 198 (281)
Q Consensus 125 ~dp~~~---i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~p 198 (281)
.+|+.+ ++.+.+.|...+=++.-..+.+.-.+.++++|+ .++++.+..|.....+...+++...+-. .+
T Consensus 19 ~~~~~~~~~~~~~~~~Gf~~~Kikvg~~~~~~di~~v~~vr~~~g~~~~l~vDan~~~~~~~Ai~~~~~l~~~-----~i 93 (247)
T d1tzza1 19 KGLSMLRGEMRGYLDRGYNVVKMKIGGAPIEEDRMRIEAVLEEIGKDAQLAVDANGRFNLETGIAYAKMLRDY-----PL 93 (247)
T ss_dssp -CHHHHHHHHHHHHTTTCSEEEEECSSSCHHHHHHHHHHHHHHHTTTCEEEEECTTCCCHHHHHHHHHHHTTS-----CC
T ss_pred cCHHHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHHHHHhccCCceEEecccccccchhHHHHHhhcchh-----hh
Confidence 356655 455678899999999642122333345666654 3456777778777777666665532111 01
Q ss_pred CCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCC-ChhcHHHHHHcCC-----cEEEEccc
Q 023494 199 GFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGV-GPKNAYKVIEAGA-----NALVAGSA 256 (281)
Q Consensus 199 G~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI-~~e~i~~~~~aGA-----D~~VvGSa 256 (281)
-+-.|++.+..++-++++++. .+++|++|-.+ +.+....+++.|| |++...-.
T Consensus 94 ~wiEeP~~~~d~~~~~~l~~~-----~~ipia~gE~~~~~~~~~~~i~~~a~~~~~Di~~~d~~ 152 (247)
T d1tzza1 94 FWYEEVGDPLDYALQAALAEF-----YPGPMATGENLFSHQDARNLLRYGGMRPDRDWLQFDCA 152 (247)
T ss_dssp SEEECCSCTTCHHHHHHHTTT-----CCSCEEECTTCCSHHHHHHHHHHSCCCTTTCEECCCTT
T ss_pred hhhccccccccchhhhhhhhc-----cccccccchhhhhhHHHHHHHHccCCcCcceeEeeccc
Confidence 112466766666666655543 35789888887 4888888899886 77776543
|
| >d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: NADPH dehydrogenase NamA species: Bacillus subtilis [TaxId: 1423]
Probab=85.95 E-value=2.4 Score=36.56 Aligned_cols=120 Identities=20% Similarity=0.203 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCCeEEEEeeeCccc-----c--c-------------ccCCHHHHHHcCcCCCCCeeEEEEecCh------
Q 023494 74 EQVKAVELAGCDWIHVDVMDGRFV-----P--N-------------ITIGPLVVDALRPVTDLPLDVHLMIVEP------ 127 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~fv-----p--n-------------~~~G~~~I~~ir~~t~~~idaHLmv~dp------ 127 (281)
++.+++.++|.|.++|-.-.|..+ | | ..|-.++++++|+..+.++.+-+-..+-
T Consensus 147 ~AA~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~~~~~g~~ 226 (337)
T d1z41a1 147 QAAARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASDYTDKGLD 226 (337)
T ss_dssp HHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCCCSTTSCC
T ss_pred HHHHHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccccccCccc
Confidence 344566789999998875544211 1 1 2355778999998767777775544322
Q ss_pred ----hhHHHHHHHcCCCEEEEcccccc-------cccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--CCEEEE
Q 023494 128 ----EQRVPDFIKAGADIVSVHCEQSS-------TIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--VDLVLI 193 (281)
Q Consensus 128 ----~~~i~~~~~aGAd~Itvh~Ea~~-------~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--vD~Ilv 193 (281)
..+++.+.++|.|++.+..-... ........+.+|+.-....++..--+..+..++.+.. +|+|.+
T Consensus 227 ~~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~D~V~~ 305 (337)
T d1z41a1 227 IADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQADMATGAVGMITDGSMAEEILQNGRADLIFI 305 (337)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHCCEEEECSSCCSHHHHHHHHHTTSCSEEEE
T ss_pred hhhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcCceEEEeCCcCCHHHHHHHHHCCCcceehh
Confidence 13566678999999999743210 1123356677777644444444444677888888774 898865
|
| >d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Dihydrodipicolinate synthase species: Bacillus anthracis [TaxId: 1392]
Probab=85.76 E-value=2.8 Score=34.80 Aligned_cols=172 Identities=15% Similarity=0.125 Sum_probs=96.2
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcC--CCCCeeEEEEecChh---hHHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPV--TDLPLDVHLMIVEPE---QRVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~--t~~~idaHLmv~dp~---~~i~~~~~ 136 (281)
++|+..+++.++.+.+.|++.+-+ -|+.--...+..+. ++...+. .+.++.++.-..+.. +..+.+.+
T Consensus 20 ~iD~~~~~~~i~~l~~~Gv~gl~~---~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~ 96 (292)
T d1xkya1 20 NIDFAKTTKLVNYLIDNGTTAIVV---GGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATE 96 (292)
T ss_dssp SBCHHHHHHHHHHHHHTTCCEEEE---SSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHCCCCEEEE---CeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHH
Confidence 467778889999999999997644 23222222333333 3333332 346888877766655 34556789
Q ss_pred cCCCEEEEcccc---cccccHHHHHHHHHH-cCCcEEEEECC-----CCCHHHHHHhhccCCEEEEEeecCCCCCCccch
Q 023494 137 AGADIVSVHCEQ---SSTIHLHRTLNQIKD-LGAKAGVVLNP-----ATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIE 207 (281)
Q Consensus 137 aGAd~Itvh~Ea---~~~~~i~~~l~~ik~-~G~k~Glai~p-----~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~ 207 (281)
+|||.+.+..-. .+.+.+.+..+.+-+ .++.+.+--+| ..+.+.+.++.+...++.+= ...
T Consensus 97 ~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~~pi~iYn~P~~~~~~~~~~~~~~l~~~p~v~giK----------~~~ 166 (292)
T d1xkya1 97 VGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTPLPVMLYNVPGRSIVQISVDTVVRLSEIENIVAIK----------DAG 166 (292)
T ss_dssp TTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHTSTTEEEEE----------ECS
T ss_pred cCCCEEEECCCCCCCCCHHHHHHHHHHHhccCCCcEEEEeCCcccCCccCHHHHhhhccCCCEEEEe----------ccc
Confidence 999999886321 122334444544433 35555554333 35667777776654444331 111
Q ss_pred hHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 208 SQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 208 ~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
.......++.+. .+.++.+ ..|+ . +.+......|++.++.|.+
T Consensus 167 ~~~~~~~~~~~~---~~~~~~v-~~G~-~-~~~~~~~~~G~~G~~~~~~ 209 (292)
T d1xkya1 167 GDVLTMTEIIEK---TADDFAV-YSGD-D-GLTLPAMAVGAKGIVSVAS 209 (292)
T ss_dssp SCHHHHHHHHHH---SCTTCEE-EESS-G-GGHHHHHHTTCCEEEESTH
T ss_pred cchhhhheeeee---cCCCCEE-EECC-c-cccchHHHcCCCccccchh
Confidence 112233333333 2234444 3443 3 3455567789999999965
|
| >d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: 2,4-dienoyl-CoA reductase, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=85.07 E-value=2.1 Score=36.87 Aligned_cols=133 Identities=19% Similarity=0.204 Sum_probs=79.5
Q ss_pred HHHHHHHHcCCCeEEEEeeeCc----c-cc--c-------------ccCCHHHHHHcCcCC--CCCeeEEEEecCh----
Q 023494 74 EQVKAVELAGCDWIHVDVMDGR----F-VP--N-------------ITIGPLVVDALRPVT--DLPLDVHLMIVEP---- 127 (281)
Q Consensus 74 ~~l~~l~~~G~d~iHiDImDG~----f-vp--n-------------~~~G~~~I~~ir~~t--~~~idaHLmv~dp---- 127 (281)
++.+++.++|.|.|+|-.-.|. | .| | ..|-.++++++|+.. +.++.+-+=..|.
T Consensus 145 ~aA~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d~~~~g 224 (330)
T d1ps9a1 145 RCAQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDG 224 (330)
T ss_dssp HHHHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTC
T ss_pred HHHHHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccccccCC
Confidence 3445667999999988755442 1 11 1 246678888998863 4556655544432
Q ss_pred ------hhHHHHHHHcCCCEEEEccc---c------c--ccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhcc--C
Q 023494 128 ------EQRVPDFIKAGADIVSVHCE---Q------S--STIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDV--V 188 (281)
Q Consensus 128 ------~~~i~~~~~aGAd~Itvh~E---a------~--~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~--v 188 (281)
.++++.+.++|.|++.+..- . . .........+.+|+.-....+...--+..+..++++.. +
T Consensus 225 ~~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~pvi~~G~i~~~~~ae~~l~~g~~ 304 (330)
T d1ps9a1 225 GTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVSLPLVTTNRINDPQVADDILSRGDA 304 (330)
T ss_dssp CCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCSSCEEECSSCCSHHHHHHHHHTTSC
T ss_pred CCHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCCceEEEeCCCCCHHHHHHHHHCCCc
Confidence 23455677889999987521 0 0 01123455667776533333444444677888888774 9
Q ss_pred CEEEEEeecCCCCCCccc--hhHHHHHH
Q 023494 189 DLVLIMSVNPGFGGQSFI--ESQVKKIS 214 (281)
Q Consensus 189 D~IlvmsV~pG~~GQ~f~--~~~l~kI~ 214 (281)
|+|.+ |..|+ |+..+|++
T Consensus 305 D~V~~--------gR~~iadP~~~~k~~ 324 (330)
T d1ps9a1 305 DMVSM--------ARPFLADAELLSKAQ 324 (330)
T ss_dssp SEEEE--------STHHHHCTTHHHHHH
T ss_pred chhHh--------hHHHHhChhHHHHHH
Confidence 98865 34454 66666664
|
| >d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: N-acetylneuraminate lyase species: Escherichia coli [TaxId: 562]
Probab=84.80 E-value=3.1 Score=34.61 Aligned_cols=171 Identities=18% Similarity=0.092 Sum_probs=93.4
Q ss_pred ccCccCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHH----HHHcCcC--CCCCeeEEEEecChh---hHHHHHHH
Q 023494 66 SANFAKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLV----VDALRPV--TDLPLDVHLMIVEPE---QRVPDFIK 136 (281)
Q Consensus 66 a~D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~----I~~ir~~--t~~~idaHLmv~dp~---~~i~~~~~ 136 (281)
.+|+..+.+.++.+.+.|++-+-+ -|+.--...+..+. ++...+. .+.|+.++.--.+.. ++.+.+.+
T Consensus 19 ~iD~~~l~~~i~~l~~~Gv~gi~~---~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~ 95 (295)
T d1hl2a_ 19 ALDKASLRRLVQFNIQQGIDGLYV---GGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKR 95 (295)
T ss_dssp SBCHHHHHHHHHHHHHHTCSEEEE---SSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHcCCCEEEE---CeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHh
Confidence 478888999999999999997643 23322333344333 4433333 235777654444443 45666788
Q ss_pred cCCCEEEEccccc---ccccHHH-HHHHHHHc-CCcEEEEECCC-----CCHHHHHHhhccCCEEEEEeecCCCCCCccc
Q 023494 137 AGADIVSVHCEQS---STIHLHR-TLNQIKDL-GAKAGVVLNPA-----TSLSAIECVLDVVDLVLIMSVNPGFGGQSFI 206 (281)
Q Consensus 137 aGAd~Itvh~Ea~---~~~~i~~-~l~~ik~~-G~k~Glai~p~-----t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~ 206 (281)
+|+|.+.+..-.. +.+.+.+ +.+.+.+. +..+.+--+|. .+.+.+.++.+...++.+= +.+ + .
T Consensus 96 ~Gad~~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~~~l~~L~~~pnvvgiK--~~~--~---~ 168 (295)
T d1hl2a_ 96 YGFDAVSAVTPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTLDQINTLVTLPGVGALK--QTS--G---D 168 (295)
T ss_dssp HTCSEEEEECCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCHHHHHHHHTSTTEEEEE--ECC--C---C
T ss_pred cCCceeeeeeccccCCChHHHHHHHHHHhcccCcCcccccccccccccccccccccccccCcchhhhc--ccc--c---c
Confidence 9999988763321 1222222 22334434 33444433332 4667788877655555431 111 1 1
Q ss_pred hhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCcEEEEccc
Q 023494 207 ESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGANALVAGSA 256 (281)
Q Consensus 207 ~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD~~VvGSa 256 (281)
+.++.+++...+ ++. |-+| +.+.+......|++.++.|.+
T Consensus 169 ---~~~~~~~~~~~~----~~~--v~~g-~~~~~~~~~~~G~~G~is~~~ 208 (295)
T d1hl2a_ 169 ---LYQMEQIRREHP----DLV--LYNG-YDEIFASGLLAGADGGIGSTY 208 (295)
T ss_dssp ---HHHHHHHHHHCT----TCE--EEEC-CGGGHHHHHHHTCCEEEETTH
T ss_pred ---HHHHHHHhhcCC----Cce--Eecc-cHHHHhhhhccCCCceeccch
Confidence 223444444322 333 3344 234566778899999999964
|
| >d1l6wa_ c.1.10.1 (A:) Decameric fructose-6-phosphate aldolase/transaldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Decameric fructose-6-phosphate aldolase/transaldolase species: Escherichia coli [TaxId: 562]
Probab=84.75 E-value=3.4 Score=33.59 Aligned_cols=175 Identities=17% Similarity=0.101 Sum_probs=101.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeeeC-cccccc--cCCH---HHHHHcCcCC--CCCeeEEEEecChhhHHHHH---H
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMDG-RFVPNI--TIGP---LVVDALRPVT--DLPLDVHLMIVEPEQRVPDF---I 135 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImDG-~fvpn~--~~G~---~~I~~ir~~t--~~~idaHLmv~dp~~~i~~~---~ 135 (281)
+|-.++++ ++.+.+.|. .|| ++-|.+ .-|. ..++.+++.. +.++.+..+-.|++..++.+ .
T Consensus 5 lDtAd~~e-ik~~~~~~~-------i~GvTTNPsll~k~~~~~~~~~~~i~~~~~~~~~is~ev~~~~~~~mi~~A~~l~ 76 (220)
T d1l6wa_ 5 LDTSDVVA-VKALSRIFP-------LAGVTTNPSIIAAGKKPLDVVLPQLHEAMGGQGRLFAQVMATTAEGMVNDALKLR 76 (220)
T ss_dssp EECCCHHH-HHHHHTTSC-------CCEEECCHHHHHHHCSCHHHHHHHHHHHTTTCSEEEEECCCSSHHHHHHHHHHHH
T ss_pred EEcCCHHH-HHHHHhcCC-------CCEEecCHHHHHhCCCCHHHHHHHHHHHhCcCCeEEeEEeeehhhhhHHHHHHHH
Confidence 46666654 566666552 335 222322 0011 2344555442 34566655667776655543 3
Q ss_pred HcCCC-EEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHH
Q 023494 136 KAGAD-IVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKIS 214 (281)
Q Consensus 136 ~aGAd-~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~ 214 (281)
+.+-+ .|=++.. .+--+.++.+++.|+++-+..-- +.-..+......++||... .|.- ...-....+.++
T Consensus 77 ~~~~nv~IKIP~t----~~g~~ai~~L~~~Gi~vn~Tavf-s~~Qa~~Aa~aga~yvspy---~gR~-~d~g~dg~~~i~ 147 (220)
T d1l6wa_ 77 SIIADIVVKVPVT----AEGLAAIKMLKAEGIPTLGTAVY-GAAQGLLSALAGAEYVAPY---VNRI-DAQGGSGIQTVT 147 (220)
T ss_dssp HHSTTCEEEEECS----HHHHHHHHHHHHHTCCEEEEEEC-SHHHHHHHHHHTCSEEEEB---HHHH-HHTTSCHHHHHH
T ss_pred HhccccEEEeecc----ccccchhhhhhhcccchhhhhcc-cHHHHHHhhhcCCcEEeee---eeeh-hhcccCChHHHH
Confidence 44444 4445543 22346677888889999775432 2223333333358888543 2310 001123466778
Q ss_pred HHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEEEEcccccC
Q 023494 215 DLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANALVAGSAVFG 259 (281)
Q Consensus 215 ~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~VvGSaIf~ 259 (281)
++++++..++++.+|-+ ++++ .+++.++.++|+|++.+.-.+++
T Consensus 148 ~~~~~~~~~~~~tkIl~-AS~R~~~~v~~~~~~G~d~iTip~~v~~ 192 (220)
T d1l6wa_ 148 DLHQLLKMHAPQAKVLA-ASFKTPRQALDCLLAGCESITLPLDVAQ 192 (220)
T ss_dssp HHHHHHHHHCTTCEEEE-BCCSSHHHHHHHHHTTCSEEEECHHHHH
T ss_pred HHHHHHHhcCCCceEee-hhcCCHHHHHHHHHcCCCEEEcCHHHHH
Confidence 88888877788888854 6666 88999999999999999977764
|
| >d1l6sa_ c.1.10.3 (A:) 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) domain: 5-aminolaevulinate dehydratase, ALAD (porphobilinogen synthase) species: Escherichia coli [TaxId: 562]
Probab=84.45 E-value=6.7 Score=33.78 Aligned_cols=174 Identities=16% Similarity=0.235 Sum_probs=102.4
Q ss_pred EEEeccCccCHHHHHHHHHHcCCCeEEEE-e---ee--C--cccccccCCHHHHHHcCcC-CCCCeeEEEEecC------
Q 023494 62 PSILSANFAKLGEQVKAVELAGCDWIHVD-V---MD--G--RFVPNITIGPLVVDALRPV-TDLPLDVHLMIVE------ 126 (281)
Q Consensus 62 pSila~D~~~l~~~l~~l~~~G~d~iHiD-I---mD--G--~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~d------ 126 (281)
|.+.-.-...+.++++.+.+.|+..+=+= + .| | .|-|+ .+=.+.++.+|+. +++.+-+|+-...
T Consensus 50 PGv~R~Sid~Lv~eie~~~~lGI~av~LFpv~~~kdk~gseA~n~d-~lv~rai~~iK~~~pdi~vi~DVcLcpYT~hGH 128 (323)
T d1l6sa_ 50 PGVMRIPEKHLAREIERIANAGIRSVMTFGISHHTDETGSDAWRED-GLVARMSRICKQTVPEMIVMSDTCFCEYTSHGH 128 (323)
T ss_dssp TTCEEEEGGGHHHHHHHHHHHTCCEEEEEEECSSCBSSCGGGGSTT-SHHHHHHHHHHHHCTTSEEEEEECSTTTBSSCC
T ss_pred CCceEeCHHHHHHHHHHHHHcccceeeeeccccccCCCchhhcCCc-cHHHHHHHHHHhhCCCceeeeccccchhhhhcc
Confidence 44555555689999999999999976441 1 11 1 11111 2223577888775 6666666654311
Q ss_pred ------------h--hhHHHH---HHHcCCCEEEEcccccccccHHHHHHHHHHcCCc-EEEE-----------------
Q 023494 127 ------------P--EQRVPD---FIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAK-AGVV----------------- 171 (281)
Q Consensus 127 ------------p--~~~i~~---~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k-~Gla----------------- 171 (281)
. ..+.++ ++++|||+|.--.- .+-.+..+-+.+.++|.. +++.
T Consensus 129 cGil~~~~IdND~Tl~~L~k~Al~~A~AGaDiVAPSdM--MDGrV~aIR~~Ld~~g~~~v~ImSYsaKyaS~fYGPFRdA 206 (323)
T d1l6sa_ 129 CGVLCEHGVDNDATLENLGKQAVVAAAAGADFIAPSAA--MDGQVQAIRQALDAAGFKDTAIMSYSTKFASSFYGPFREA 206 (323)
T ss_dssp SSCBCSSSBCHHHHHHHHHHHHHHHHHHTCSEEEECSC--CTTHHHHHHHHHHHTTCTTCEEBCCCEEBCCSCCHHHHHH
T ss_pred ceeeccCCCCcHHHHHHHHHHHHHHHHhcCCeeecccc--cCCHHHHHHHHHHhcCccccceeehhhhccccccchhHHH
Confidence 0 112222 47899999976543 234566666667777764 3332
Q ss_pred -------------ECCCCCHHHHHHh----hccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE---
Q 023494 172 -------------LNPATSLSAIECV----LDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV--- 231 (281)
Q Consensus 172 -------------i~p~t~ie~~~~~----l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V--- 231 (281)
++|...-|.+.+. .+.+|+++| -||.. .|+-|+++++.. +.++.+
T Consensus 207 ~~s~~~gdr~sYQmd~~n~~ea~~e~~~d~~EGAD~lmV---KPa~~-------yLDii~~~k~~~-----~~Pv~aYqV 271 (323)
T d1l6sa_ 207 AGSALKGDRKSYQMNPMNRREAIRESLLDEAQGADCLMV---KPAGA-------YLDIVRELRERT-----ELPIGAYQV 271 (323)
T ss_dssp HTCCCSSCCTTTSBCTTCHHHHHHHHHHHHHTTCSBEEE---ESCTT-------CHHHHHHHHTTC-----SSCEEEEEC
T ss_pred hcCCCCCCCcceecCcccchHHHHHHHHHHhhccceEEe---ccchh-------hHHHHHHHHHhc-----CCCEEEEEc
Confidence 2233333444443 234899875 67642 266777776543 466653
Q ss_pred ------------ecCCChh-----cHHHHHHcCCcEEEE
Q 023494 232 ------------DGGVGPK-----NAYKVIEAGANALVA 253 (281)
Q Consensus 232 ------------DGGI~~e-----~i~~~~~aGAD~~Vv 253 (281)
.|.++.+ .+.-+..||||+++-
T Consensus 272 SGEYami~~aa~~g~~d~~~~~~E~l~~~kRAGAd~Iit 310 (323)
T d1l6sa_ 272 SGEYAMIKFAALAGAIDEEKVVLESLGSIKRAGADLIFS 310 (323)
T ss_dssp HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHHcCCCchHhHHHHHHHHHHhcCCCEEEE
Confidence 5778754 566779999998874
|
| >d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Putative cytoplasmic protein STM4435 species: Salmonella typhimurium [TaxId: 90371]
Probab=84.18 E-value=6 Score=31.88 Aligned_cols=122 Identities=11% Similarity=-0.055 Sum_probs=70.5
Q ss_pred eccCccCHHHHHHHHHHcCCCeEEEEeee-CcccccccCCHHHHHHcCcCCCCCeeEEEEe----cCh--------hhHH
Q 023494 65 LSANFAKLGEQVKAVELAGCDWIHVDVMD-GRFVPNITIGPLVVDALRPVTDLPLDVHLMI----VEP--------EQRV 131 (281)
Q Consensus 65 la~D~~~l~~~l~~l~~~G~d~iHiDImD-G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv----~dp--------~~~i 131 (281)
+.+.-..+++.++.+.+.|.|.|++.... +.+.+ -...++.++++.+..++.+.. +.. .++ .+.+
T Consensus 13 ~~~p~l~lee~l~~a~~~G~dgiEl~~~~~~~~~~-~~~~~~~~k~~l~~~gl~i~~-l~~~~~~~~~~~~~~~~~~~~i 90 (271)
T d2q02a1 13 KIAPGLSIEAFFRLVKRLEFNKVELRNDMPSGSVT-DDLNYNQVRNLAEKYGLEIVT-INAVYPFNQLTEEVVKKTEGLL 90 (271)
T ss_dssp GGCTTSCHHHHHHHHHHTTCCEEEEETTSTTSSTT-TTCCHHHHHHHHHHTTCEEEE-EEEETTTTSCCHHHHHHHHHHH
T ss_pred hhcCCCCHHHHHHHHHHhCCCEEEEecCccccccc-ccCCHHHHHHHHHHcCCcEEE-eecccccCCCCHHHHHHHHHHH
Confidence 33445689999999999999999884222 11111 123455555553335554433 121 122 2346
Q ss_pred HHHHHcCCCEEEEcccccc--------cccHHHHHHHHHHcCCcEEEEE-CCC----CCHHHHHHhhccC
Q 023494 132 PDFIKAGADIVSVHCEQSS--------TIHLHRTLNQIKDLGAKAGVVL-NPA----TSLSAIECVLDVV 188 (281)
Q Consensus 132 ~~~~~aGAd~Itvh~Ea~~--------~~~i~~~l~~ik~~G~k~Glai-~p~----t~ie~~~~~l~~v 188 (281)
+.+.+.|++.|.++..... .+.+.++.+.++++|+++++-. +.. ...+....+++.+
T Consensus 91 ~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~~~~~~~~~~~~~li~~~ 160 (271)
T d2q02a1 91 RDAQGVGARALVLCPLNDGTIVPPEVTVEAIKRLSDLFARYDIQGLVEPLGFRVSSLRSAVWAQQLIREA 160 (271)
T ss_dssp HHHHHHTCSEEEECCCCSSBCCCHHHHHHHHHHHHHHHHTTTCEEEECCCCSTTCSCCCHHHHHHHHHHH
T ss_pred HHHHHcCCcEEEEecCCCCccchHHHHHHHHHHHHHHhccCCeEEEEeecCCcCcccCCHHHHHHHHHHh
Confidence 6778889999999754211 1235566677788898888854 222 2344455555543
|
| >d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.96 E-value=1.3 Score=34.93 Aligned_cols=84 Identities=13% Similarity=0.172 Sum_probs=61.2
Q ss_pred HHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHH
Q 023494 105 LVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIEC 183 (281)
Q Consensus 105 ~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~ 183 (281)
+.++.+|+. +..++.+ -+.+.+ ....+.++|+|.|-+=-. +.+++.+.++.+++.+-.+-+..+.+-..+.+.+
T Consensus 68 ~~i~~~k~~~~~~~I~V--Ev~s~~-q~~~a~~~~~diImLDN~--sp~~~k~~v~~~~~~~~~i~lEaSGgI~~~ni~~ 142 (169)
T d1qpoa1 68 DALRAVRNAAPDLPCEV--EVDSLE-QLDAVLPEKPELILLDNF--AVWQTQTAVQRRDSRAPTVMLESSGGLSLQTAAT 142 (169)
T ss_dssp HHHHHHHHHCTTSCEEE--EESSHH-HHHHHGGGCCSEEEEETC--CHHHHHHHHHHHHHHCTTCEEEEESSCCTTTHHH
T ss_pred hhhhhhhhhcCCCceEE--EeccHH-HhhhhhhcCCcEEEecCc--ChHhHHHHHHHhhccCCeeEEEEeCCCCHHHHHH
Confidence 456666664 4445554 566654 456678899999886644 4677889999988888778888777777888888
Q ss_pred hhc-cCCEEEE
Q 023494 184 VLD-VVDLVLI 193 (281)
Q Consensus 184 ~l~-~vD~Ilv 193 (281)
|.. .+|+|.+
T Consensus 143 ya~~GvD~IS~ 153 (169)
T d1qpoa1 143 YAETGVDYLAV 153 (169)
T ss_dssp HHHTTCSEEEC
T ss_pred HHHcCCCEEEC
Confidence 876 5999964
|
| >d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Radical SAM enzymes family: Oxygen-independent coproporphyrinogen III oxidase HemN domain: Oxygen-independent coproporphyrinogen III oxidase HemN species: Escherichia coli [TaxId: 562]
Probab=83.82 E-value=4.6 Score=35.98 Aligned_cols=167 Identities=16% Similarity=0.236 Sum_probs=93.7
Q ss_pred HHHHHcCcCCCCCeeEEEEe-cChh----hHHHHHHHcCCCEEEEccccc------------ccccHHHHHHHHHHcCCc
Q 023494 105 LVVDALRPVTDLPLDVHLMI-VEPE----QRVPDFIKAGADIVSVHCEQS------------STIHLHRTLNQIKDLGAK 167 (281)
Q Consensus 105 ~~I~~ir~~t~~~idaHLmv-~dp~----~~i~~~~~aGAd~Itvh~Ea~------------~~~~i~~~l~~ik~~G~k 167 (281)
++++.|++..+..-++.+-+ .||. ..++.+.++|++.+++..++. +.+++.+.++.+|+.|..
T Consensus 122 ~ll~~l~~~~~~~~~~e~t~E~~P~~~~~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~~~~~~~~~~~~~~r~~g~~ 201 (441)
T d1olta_ 122 RLMKLLRENFQFNADAEISIEVDPREIELDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNREQDEEFIFALLNHAREIGFT 201 (441)
T ss_dssp HHHHHHHHHSCEEEEEEEEEEECSSSCCTHHHHHHHHTTCCEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHhhhccccchhcccccccccccchHHHHHHHHhCCceEEecchhcchhhhhhhhcCCCHHHHHHHHHHHHhcccc
Confidence 34455555433322332333 4664 468889999999999997754 223477889999999985
Q ss_pred -EEEEEC---CCCCHHHHHHhh----c-cCCEEEEEe--ecCCCC-CCc--------cchhHHHHHHHHHHHhhhcCCCC
Q 023494 168 -AGVVLN---PATSLSAIECVL----D-VVDLVLIMS--VNPGFG-GQS--------FIESQVKKISDLRRMCLEKGVNP 227 (281)
Q Consensus 168 -~Glai~---p~t~ie~~~~~l----~-~vD~Ilvms--V~pG~~-GQ~--------f~~~~l~kI~~lr~l~~~~~~~~ 227 (281)
+.+.+- |+...+.+.+-+ . .+|.|.+.. +.|+.. .|. .....++......+.+.+.|+.
T Consensus 202 ~vn~DLI~GlPgqT~~~~~~tl~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L~~~GY~- 280 (441)
T d1olta_ 202 STNIDLIYGLPKQTPESFAFTLKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFLTQSGYQ- 280 (441)
T ss_dssp SCEEEEEESCTTCCHHHHHHHHHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHHHHTTCE-
T ss_pred eeecccccccCCcchHHHHHHHHHHHhhCCCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHHHHcCch-
Confidence 888763 444444333322 2 378887754 456542 222 1233345555666666666643
Q ss_pred eEEEecCCChhcH-HHHHH--------------cCCcEEEEc-ccc--------cCCCCHHHHHHHHHH
Q 023494 228 WIEVDGGVGPKNA-YKVIE--------------AGANALVAG-SAV--------FGAKDYAEAIKGIKT 272 (281)
Q Consensus 228 ~I~VDGGI~~e~i-~~~~~--------------aGAD~~VvG-SaI--------f~a~dp~~~~~~l~~ 272 (281)
.+++|-=..++.- ....+ .+.+.+-+| |++ .+..|+.+..+.+.+
T Consensus 281 ~~~~~~far~~~~~~~a~~~g~~~r~~~gy~~~~~~~~iGlG~sA~S~~~~~~~~N~~~l~~Y~~~i~~ 349 (441)
T d1olta_ 281 FIGMDHFARPDDELAVAQREGVLHRNFQGYTTQGDTDLLGMGVSAISMIGDCYAQNQKELKQYYQQVDE 349 (441)
T ss_dssp EEETTEEECTTSHHHHHHHHTCCEECSSCEESCCSCEEEEESTTCEEEETTEEEEECSSHHHHHHHHHH
T ss_pred hhhHHHhhhcchhhhhhhhhhhhcccccccccCCCcceeecccCceeeeecceeeeehhhhhhhhhhhh
Confidence 3555544443321 12122 234666666 332 134677777766655
|
| >d1geha1 c.1.14.1 (A:137-443) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Archaeon Thermococcus kodakaraensis [TaxId: 311400]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Archaeon Thermococcus kodakaraensis [TaxId: 311400]
Probab=83.77 E-value=4.2 Score=34.76 Aligned_cols=200 Identities=14% Similarity=0.162 Sum_probs=103.4
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEE--eeeCccccc---ccCCHHHHHHcCcCCCCCeeEEEEe-cChhhH---HHHHHHc
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVD--VMDGRFVPN---ITIGPLVVDALRPVTDLPLDVHLMI-VEPEQR---VPDFIKA 137 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn---~~~G~~~I~~ir~~t~~~idaHLmv-~dp~~~---i~~~~~a 137 (281)
+++..+.+....+..+|+|.|-=| +.|..|.|- +....+.+++..+.|+....--.-+ .++.+. .+.+.++
T Consensus 32 ls~~~~a~~~~~~~~GGvD~IKDDe~la~~~~~p~~eRv~~~~~a~~~a~~~TG~~~lYa~NiT~~~~em~~ra~~a~~~ 111 (307)
T d1geha1 32 YSPEEFEKLAYDLLSNGADYMKDDENLTSPWYNRFEERAEIMAKIIDKVENETGEKKTWFANITADLLEMEQRLEVLADL 111 (307)
T ss_dssp CCHHHHHHHHHHHHHTTCCEEECCTTCCCCTTSCHHHHHHHHHHHHHHHHHHTCSCCEEECBCCSSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCeeeCCccccCCCCCcHHHHHHHHHHHHHHHHHHhCCeeEEEEEccCChHHHHHHHHHHHHc
Confidence 566788898999999999986433 344455552 1223344444444466432222233 455444 3456789
Q ss_pred CCCEEEEcccccccccHHHHHHH-HHHcCCcEEEEEC----------CCCCH--HHHHHhhc--cCCEEEEEeecCCCCC
Q 023494 138 GADIVSVHCEQSSTIHLHRTLNQ-IKDLGAKAGVVLN----------PATSL--SAIECVLD--VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 138 GAd~Itvh~Ea~~~~~i~~~l~~-ik~~G~k~Glai~----------p~t~i--e~~~~~l~--~vD~IlvmsV~pG~~G 202 (281)
|++.+.+-.-.. --+.-+.++. .++.++ -+-.+ |..-+ ..+.+++. .+|.+.+ ++.++
T Consensus 112 G~~~vmi~~~~~-G~~al~~lr~~~~~~~l--pIh~H~A~~ga~~~~~~~Gis~~vl~kl~Rl~GaD~ih~----~~~~~ 184 (307)
T d1geha1 112 GLKHAMVDVVIT-GWGALRYIRDLAADYGL--AIHGHRAMHAAFTRNPYHGISMFVLAKLYRLIGIDQLHV----GTAGA 184 (307)
T ss_dssp TCCEEEEEHHHH-CHHHHHHHHHHHHHTTC--EEEEECTTGGGTSSCTTSEECHHHHHHHHHHHTCSEEEC----CCC--
T ss_pred CCCEEEEecccc-chHHHHHHHHhhccCCe--EEEeccccceeeecCccCCccHHHHHHHHHHhCcCceec----ccccc
Confidence 999887664321 1111223332 234333 22222 22212 23444433 3787654 23333
Q ss_pred CccchhHHHHHHHHHHHhhhc-----------------C-CCCeEEEecCCChhcHHHH-HHcCCcEEEE-cccccCCCC
Q 023494 203 QSFIESQVKKISDLRRMCLEK-----------------G-VNPWIEVDGGVGPKNAYKV-IEAGANALVA-GSAVFGAKD 262 (281)
Q Consensus 203 Q~f~~~~l~kI~~lr~l~~~~-----------------~-~~~~I~VDGGI~~e~i~~~-~~aGAD~~Vv-GSaIf~a~d 262 (281)
-+|....-+.++ ..+.+.+. + ....=...||+++..++.+ ...|-|+++. |.+|+..+|
T Consensus 185 g~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~g~~k~~~Pv~sgG~~~~~vp~~~~~~G~Dvil~~GGgi~gHP~ 263 (307)
T d1geha1 185 GKLEGGKWDVIQ-NARILRESHYKPDENDVFHLEQKFYSIKAAFPTSSGGLHPGNIQPVIEALGTDIVLQLGGGTLGHPD 263 (307)
T ss_dssp ---CTHHHHHHH-HHHHHHCSEECCCTTCCSCCCEECTTCCCCEEEEESSCCTTTHHHHHHHTCSSSEEECSHHHHSCTT
T ss_pred ccccCCHHHHHH-HHHHHhhhhccccccccceecccccccCCcccccCCCCcHHHHHHHHHHhCCcEEEEcCccccCCCC
Confidence 333322222222 22221110 0 1122347999999998866 5678887664 688998855
Q ss_pred -HHHHHHHHHHhc
Q 023494 263 -YAEAIKGIKTSK 274 (281)
Q Consensus 263 -p~~~~~~l~~~~ 274 (281)
+++-++.+|+.+
T Consensus 264 G~aaGa~A~RqA~ 276 (307)
T d1geha1 264 GPAAGARAVRQAI 276 (307)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 888888888754
|
| >d1o4ua1 c.1.17.1 (A:104-273) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like family: NadC C-terminal domain-like domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.60 E-value=1.4 Score=34.81 Aligned_cols=85 Identities=20% Similarity=0.205 Sum_probs=60.0
Q ss_pred HHHHHcCcCC--CCCeeEEEEecChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHH
Q 023494 105 LVVDALRPVT--DLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIE 182 (281)
Q Consensus 105 ~~I~~ir~~t--~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~ 182 (281)
+.++.+|+.. ..++.+ -+.+.. .+..+.++|+|.|-+--. +.+++.++.+.++..+-++-+..+-+-..+.+.
T Consensus 66 ~~~~~~~~~~~~~~~I~V--Ev~~~~-e~~~a~~~g~d~i~LDn~--~pe~~k~~~~~lk~~~~~i~lEaSGGI~~~ni~ 140 (170)
T d1o4ua1 66 RAVQEVRKIIPFTTKIEV--EVENLE-DALRAVEAGADIVMLDNL--SPEEVKDISRRIKDINPNVIVEVSGGITEENVS 140 (170)
T ss_dssp HHHHHHHTTSCTTSCEEE--EESSHH-HHHHHHHTTCSEEEEESC--CHHHHHHHHHHHHHHCTTSEEEEEECCCTTTGG
T ss_pred HHHHHHHhhCCCCceEEE--EeCcHH-HHHHHHhcCccEEEEcCc--ChhhHhHHHHHHHhhCCcEEEEEECCCCHHHHH
Confidence 4567776542 345554 566654 456688999998776544 456788888888888888888777666777778
Q ss_pred Hhhc-cCCEEEEE
Q 023494 183 CVLD-VVDLVLIM 194 (281)
Q Consensus 183 ~~l~-~vD~Ilvm 194 (281)
+|.. .+|+|.+.
T Consensus 141 ~~a~~GVD~Is~g 153 (170)
T d1o4ua1 141 LYDFETVDVISSS 153 (170)
T ss_dssp GGCCTTCCEEEEG
T ss_pred HHHHcCCCEEEcC
Confidence 8876 49988653
|
| >d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Thermus thermophilus [TaxId: 274]
Probab=83.59 E-value=9.5 Score=30.65 Aligned_cols=111 Identities=19% Similarity=0.262 Sum_probs=65.9
Q ss_pred HHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHc-C-C--cEEEEECCCCCHHHHHHhhc-----cCCEEEEEee
Q 023494 131 VPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL-G-A--KAGVVLNPATSLSAIECVLD-----VVDLVLIMSV 196 (281)
Q Consensus 131 i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~-G-~--k~Glai~p~t~ie~~~~~l~-----~vD~IlvmsV 196 (281)
++.+.+.|||=|-+-..-. ..+.+.+.++.+++. + . |+.+...-=+ -+.+..... .+|+|=-
T Consensus 76 ~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~-~~ei~~a~~~a~~aGadfiKT--- 151 (211)
T d1ub3a_ 76 AALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFS-PEEIARLAEAAIRGGADFLKT--- 151 (211)
T ss_dssp HHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSC-HHHHHHHHHHHHHHTCSEEEC---
T ss_pred HHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCC-HHHHHHHHHHHHHhccceEEe---
Confidence 4567889999777664311 122344455555553 2 2 3322221112 233333322 3788842
Q ss_pred cCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 197 NPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 197 ~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
-.||+.. ..+++.++.+++.++. ++.|-+.|||+ .+++..++++|++-+
T Consensus 152 STG~~~~---gat~e~v~~m~~~~~~---~~~iKasGGIrt~~~a~~~l~aGa~ri 201 (211)
T d1ub3a_ 152 STGFGPR---GASLEDVALLVRVAQG---RAQVKAAGGIRDRETALRMLKAGASRL 201 (211)
T ss_dssp CCSSSSC---CCCHHHHHHHHHHHTT---SSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred cCCCCCC---CCCHHHHHHHHHHhCC---CceEECcCCCCCHHHHHHHHHHhhhHh
Confidence 2455321 2467777888888754 46788999999 899999999999954
|
| >d2chra1 c.1.11.2 (A:127-370) Chlormuconate cycloisomerase {Alcaligenes eutrophus [TaxId: 106590]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Chlormuconate cycloisomerase species: Alcaligenes eutrophus [TaxId: 106590]
Probab=83.40 E-value=3.8 Score=33.19 Aligned_cols=125 Identities=13% Similarity=0.082 Sum_probs=75.5
Q ss_pred CCeeEEEEecChhhH----HHHHHHcCCCEEEEcccccc-cccHHHHHHHHHHc---CCcEEEEECCCCCHHHHHHhhcc
Q 023494 116 LPLDVHLMIVEPEQR----VPDFIKAGADIVSVHCEQSS-TIHLHRTLNQIKDL---GAKAGVVLNPATSLSAIECVLDV 187 (281)
Q Consensus 116 ~~idaHLmv~dp~~~----i~~~~~aGAd~Itvh~Ea~~-~~~i~~~l~~ik~~---G~k~Glai~p~t~ie~~~~~l~~ 187 (281)
+|+-..+-..+|.+. .+.+.+.|.+.+=+..-..+ ..++ +.++.+|+. ++++.+..|.....+....+++.
T Consensus 6 vP~~~~~~~~~~~~~~~~~~~~~~~~Gf~~~KiKvG~~~~~~D~-~~v~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~ 84 (244)
T d2chra1 6 IPIAWTLASGDTKRDLDSAVEMIERRRHNRFKVKLGFRSPQDDL-IHMEALSNSLGSKAYLRVDVNQAWDEQVASVYIPE 84 (244)
T ss_dssp EEBEEEECSSCHHHHHHHHHHHHHTTSCCEEEEECSSSCHHHHH-HHHHHHHHHTTTTSEEEEECTTCCCTHHHHHHHHH
T ss_pred EEEEEEEcCCCcHHHHHHHHHHHHhCCCCEEEEEcCCCCHHHHH-HHHHHHHHhcCCCceEEEeCCCCcchHHHHHHHHH
Confidence 445444444455543 33445579999999752111 2233 445566654 56777788888777666665543
Q ss_pred ---CCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcC-CcEEEEc
Q 023494 188 ---VDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAG-ANALVAG 254 (281)
Q Consensus 188 ---vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aG-AD~~VvG 254 (281)
.++.. -.|++.++.++.++++++.. +++|..|-.+. .+.+.++++.| +|++...
T Consensus 85 l~~~~i~~--------iEeP~~~~d~~~~~~l~~~~-----~ipia~~E~~~~~~~~~~~i~~~~~d~v~~d 143 (244)
T d2chra1 85 LEALGVEL--------IEQPVGRENTQALRRLSDNN-----RVAIMADESLSTLASAFDLARDRSVDVFSLK 143 (244)
T ss_dssp HHTTTCCE--------EECCSCSSCHHHHHHHHHHC-----SSEEEESSSCCSHHHHHHHHTTTCCSEECCC
T ss_pred HhhhhHHH--------Hhhhhhhccchhhhhhccce-----eeeeeecccccccchhhhhhhcceeEEEeec
Confidence 23222 14666666667777777654 36888777776 57777777776 7777655
|
| >d1x7fa2 c.1.8.12 (A:1-244) Outer surface protein, N-terminal domain {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: (Trans)glycosidases family: Outer surface protein, N-terminal domain domain: Outer surface protein, N-terminal domain species: Bacillus cereus [TaxId: 1396]
Probab=83.17 E-value=4.7 Score=33.42 Aligned_cols=106 Identities=14% Similarity=0.157 Sum_probs=64.0
Q ss_pred hHHHHHHHcCCCEEEE--c-ccccc---cccHHHHHHHHHHcCCcEEEEECCCCCHHH------HHHhhc-cCCEEEEEe
Q 023494 129 QRVPDFIKAGADIVSV--H-CEQSS---TIHLHRTLNQIKDLGAKAGVVLNPATSLSA------IECVLD-VVDLVLIMS 195 (281)
Q Consensus 129 ~~i~~~~~aGAd~Itv--h-~Ea~~---~~~i~~~l~~ik~~G~k~Glai~p~t~ie~------~~~~l~-~vD~Ilvms 195 (281)
.|++.+.+.|.+.|.- | .|... .+.+.++++.++++|+++.+.++|.+--.. +..+.+ .++.| -
T Consensus 21 ~yi~~a~~~Gf~~iFTSL~~~e~~~~~~~~~~~~l~~~a~~~g~~vi~DIsp~~l~~lg~s~~dl~~~~~lGi~gl---R 97 (244)
T d1x7fa2 21 AYISAAARHGFSRIFTCLLSVNRPKEEIVAEFKEIINHAKDNNMEVILDVAPAVFDQLGISYSDLSFFAELGADGI---R 97 (244)
T ss_dssp HHHHHHHTTTEEEEEEEECCC--------HHHHHHHHHHHHTTCEEEEEECTTCC------CCCTHHHHHHTCSEE---E
T ss_pred HHHHHHHHCCCCEEEecCccCCCCHHHHHHHHHHHHHHHHHCCCEEEEEcCHHHHHHhCCCHHHHHHHHHCCCCEE---E
Confidence 5899999999987654 3 33211 124678899999999999999999854321 122211 24444 4
Q ss_pred ecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCChhcHHHHHHcCCc
Q 023494 196 VNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVGPKNAYKVIEAGAN 249 (281)
Q Consensus 196 V~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~~e~i~~~~~aGAD 249 (281)
.+-||+++. +..+. .+..+++|++=-....+.+..+...++|
T Consensus 98 lD~Gf~~~e-----------~a~ms-~n~~~l~I~LNaSt~t~~l~~l~~~~~n 139 (244)
T d1x7fa2 98 LDVGFDGLT-----------EAKMT-NNPYGLKIELNVSNDIAYLENILSHQAN 139 (244)
T ss_dssp ESSCCSSHH-----------HHHHT-TCTTCCEEEEETTSCSSHHHHHTTSSCC
T ss_pred EcCCCChHH-----------HHHHh-cCCcCCEEEEECCcCHHHHHHHHHcCCC
Confidence 467777621 22222 2223567777666555567777777774
|
| >d1mb3a_ c.23.1.1 (A:) Cell division response regulator DivK {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Cell division response regulator DivK species: Caulobacter crescentus [TaxId: 155892]
Probab=83.02 E-value=3.6 Score=29.51 Aligned_cols=105 Identities=15% Similarity=0.112 Sum_probs=57.3
Q ss_pred HHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeec-CCCCCCccchhHHHHHHHHHHHhhhcCCCCe-EEEecC
Q 023494 157 TLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVN-PGFGGQSFIESQVKKISDLRRMCLEKGVNPW-IEVDGG 234 (281)
Q Consensus 157 ~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~-pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~-I~VDGG 234 (281)
+.+.+++.|..+-.+-+...-++.+.+ ...|.|++ -.+ ||.+| ++-++++|+.-. ..+++ |.+.+.
T Consensus 17 l~~~L~~~g~~v~~a~~~~~al~~~~~--~~~dlil~-D~~mp~~dG-------~el~~~ir~~~~--~~~iPii~lt~~ 84 (123)
T d1mb3a_ 17 FHDLLEAQGYETLQTREGLSALSIARE--NKPDLILM-DIQLPEISG-------LEVTKWLKEDDD--LAHIPVVAVTAF 84 (123)
T ss_dssp HHHHHHHTTCEEEEESCHHHHHHHHHH--HCCSEEEE-ESBCSSSBH-------HHHHHHHHHSTT--TTTSCEEEEC--
T ss_pred HHHHHHHCCCEEEEECCHHHHHHHHHh--CCCCEEEE-EeccCCCcH-------HHHHHHHHhCCC--cCCCCeEEEEEe
Confidence 334455667776655433222222222 14677754 332 66555 445566665321 12455 445565
Q ss_pred CChhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHHhcCcCc
Q 023494 235 VGPKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKTSKRPQA 278 (281)
Q Consensus 235 I~~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~~~~~~~ 278 (281)
-..+....+.++|+|.+ |.+.=++.+..+.+++.++++|
T Consensus 85 ~~~~~~~~~~~~G~~~~-----l~KP~~~~~L~~~i~~~l~r~P 123 (123)
T d1mb3a_ 85 AMKGDEERIREGGCEAY-----ISKPISVVHFLETIKRLLERQP 123 (123)
T ss_dssp ----CHHHHHHHTCSEE-----ECSSCCHHHHHHHHHHHHSCCC
T ss_pred cCHHHHHHHHHcCCCEE-----EECCCCHHHHHHHHHHHHhCCC
Confidence 55778888999999976 4455578888888888777653
|
| >d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class II FBP aldolase domain: Tagatose-1,6-bisphosphate aldolase species: Escherichia coli [TaxId: 562]
Probab=82.63 E-value=1.1 Score=38.30 Aligned_cols=80 Identities=28% Similarity=0.319 Sum_probs=64.7
Q ss_pred CccCHHHHHHHHHHcCCCeEEEEeee--CcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEc
Q 023494 68 NFAKLGEQVKAVELAGCDWIHVDVMD--GRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVH 145 (281)
Q Consensus 68 D~~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh 145 (281)
-+.+.+++.+.+++.|+|+|-+-|=- |.|.+.-.+..+.+++|++.++.|++.|==.--|.+.++++.+.|..=|-+.
T Consensus 152 ~~T~peea~~Fv~~TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~vPLVlHGgSG~~~e~i~~ai~~Gi~KiNi~ 231 (284)
T d1gvfa_ 152 FLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVA 231 (284)
T ss_dssp SSCCHHHHHHHHHHHCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCCSCEEECCCTTCCHHHHHHHHHTTEEEEEEC
T ss_pred ccCCHHHHHHHHHHhCCCEEeeecCceeeccCCCCccccchhhhhhccccCCeEeeCCCCCCHHHHHHHHHcCeEEEEec
Confidence 35788999999999999999886544 5666555667788999998888999999888888888899999997666666
Q ss_pred cc
Q 023494 146 CE 147 (281)
Q Consensus 146 ~E 147 (281)
-+
T Consensus 232 T~ 233 (284)
T d1gvfa_ 232 TE 233 (284)
T ss_dssp HH
T ss_pred hH
Confidence 44
|
| >d1vhka2 c.116.1.5 (A:74-253) Hypothetical protein YqeU {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: alpha/beta knot superfamily: alpha/beta knot family: YggJ C-terminal domain-like domain: Hypothetical protein YqeU species: Bacillus subtilis [TaxId: 1423]
Probab=82.63 E-value=9 Score=29.66 Aligned_cols=141 Identities=13% Similarity=0.078 Sum_probs=80.9
Q ss_pred CCeeEEEEecCh--h--h-HHHHHHHcCCCEEEEccccccc------------ccHHH-HHHHHHHcCCcEEEEECCCCC
Q 023494 116 LPLDVHLMIVEP--E--Q-RVPDFIKAGADIVSVHCEQSST------------IHLHR-TLNQIKDLGAKAGVVLNPATS 177 (281)
Q Consensus 116 ~~idaHLmv~dp--~--~-~i~~~~~aGAd~Itvh~Ea~~~------------~~i~~-~l~~ik~~G~k~Glai~p~t~ 177 (281)
.|+.+||...=| . + .++++.+.|++.++.-.-.-+. +.+++ ++.++++.|...---+++..+
T Consensus 4 ~p~~i~L~~~l~K~~~~~~ilqk~tELGV~~i~p~~s~rs~~~~~~~~~~~~~~r~~~i~~eA~eQsgr~~lP~i~~~~~ 83 (180)
T d1vhka2 4 LPIKVYIASGLPKGDKLEWIIQKGTELGAHAFIPFQAARSVVKLDDKKAKKKRERWTKIAKEAAEQSYRNEVPRVMDVHS 83 (180)
T ss_dssp CSSEEEEEEECCSTTHHHHHHHHHHHTTCCEEEEECCTTCCCC---------HHHHHHHHHHHHHHTTCSSCCEECCCBC
T ss_pred CCcEEEEEEeecCcchHHHHHHHHHhhCcceEEeeecccccccccchhhhhhHHHHHHHHHHHHHhhccccccccccCCC
Confidence 567888877433 2 2 4788999999988875321111 12333 233445555544446777777
Q ss_pred HHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE--ecCCChhcHHHHHHcCCcEEEEcc
Q 023494 178 LSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV--DGGVGPKNAYKVIEAGANALVAGS 255 (281)
Q Consensus 178 ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V--DGGI~~e~i~~~~~aGAD~~VvGS 255 (281)
++.+.+..+.-|.+++... ..... .....+ ........ ++..+.|.| -||-+.+.+..+.++|+-.+-+|.
T Consensus 84 l~~~l~~~~~~~~~~i~~~--~~~~~-~~~~~~---~~~~~~~~-~~~~i~i~IGPEGGfs~~E~~~l~~~g~~~v~LG~ 156 (180)
T d1vhka2 84 FQQLLQRMQDFDKCVVAYE--ESSKQ-GEISAF---SAIVSSLP-KGSSLLIVFGPEGGLTEAEVERLTEQDGVTCGLGP 156 (180)
T ss_dssp HHHHHHHGGGSSEEEEECC-----------CHH---HHHHHTCC-TTCEEEEEECCTTCCCHHHHHHHHHTTCEEECCCS
T ss_pred HHHHHHhccccccEEEEec--ccccc-cchhHH---HHHHhccC-CCCeEEEEecCCCCCCHHHHHHHHHCCCEEEECCC
Confidence 7766665666676654321 11111 111111 11111111 111223333 699999999999999999999999
Q ss_pred cccCCCCH
Q 023494 256 AVFGAKDY 263 (281)
Q Consensus 256 aIf~a~dp 263 (281)
.|.+++--
T Consensus 157 ~ILR~ETA 164 (180)
T d1vhka2 157 RILRTETA 164 (180)
T ss_dssp SCCCTTTH
T ss_pred CcchHHhH
Confidence 99998754
|
| >d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein IolI species: Bacillus subtilis [TaxId: 1423]
Probab=82.41 E-value=4.4 Score=32.74 Aligned_cols=117 Identities=14% Similarity=0.190 Sum_probs=67.4
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccc--cCCHHHHHHcCcCCCCC-eeEEEEec----Chh----------hHHH
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNI--TIGPLVVDALRPVTDLP-LDVHLMIV----EPE----------QRVP 132 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~--~~G~~~I~~ir~~t~~~-idaHLmv~----dp~----------~~i~ 132 (281)
.+|++.++.+.++|.+.|++...|. .|.. ....+.++..-+..++. ..+|.... ++. +.++
T Consensus 14 ~~l~~~l~~a~~~Gf~~IEl~~~~~--~~~~~~~~~~~~l~~~l~~~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 91 (278)
T d1i60a_ 14 SNLKLDLELCEKHGYDYIEIRTMDK--LPEYLKDHSLDDLAEYFQTHHIKPLALNALVFFNNRDEKGHNEIITEFKGMME 91 (278)
T ss_dssp CCHHHHHHHHHHTTCSEEEEETTTH--HHHHTTSSCHHHHHHHHHTSSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHCcCEEEeCCccc--cccccCcccHHHHHHHHHHcCCcEEEEecCCCCCCCCHHHHHHHHHHHHHHHH
Confidence 5899999999999999998765442 2222 22344444332223443 23443331 221 2456
Q ss_pred HHHHcCCCEEEEcccccc------------cccHHHHHHHHHHcCCcEEEEE-C-CCC---CHHHHHHhhccC
Q 023494 133 DFIKAGADIVSVHCEQSS------------TIHLHRTLNQIKDLGAKAGVVL-N-PAT---SLSAIECVLDVV 188 (281)
Q Consensus 133 ~~~~aGAd~Itvh~Ea~~------------~~~i~~~l~~ik~~G~k~Glai-~-p~t---~ie~~~~~l~~v 188 (281)
.+.+.|+..+.+|.-... .+.+.++.+.++++|+++++-. + +.+ ..+....+++.+
T Consensus 92 ~a~~lG~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~~~~~~~ll~~v 164 (278)
T d1i60a_ 92 TCKTLGVKYVVAVPLVTEQKIVKEEIKKSSVDVLTELSDIAEPYGVKIALEFVGHPQCTVNTFEQAYEIVNTV 164 (278)
T ss_dssp HHHHHTCCEEEEECCBCSSCCCHHHHHHHHHHHHHHHHHHHGGGTCEEEEECCCCTTBSSCSHHHHHHHHHHH
T ss_pred HHHHcCCCccccccccCCCCCCHHHHHHHHHHHHHHHHHHHHHhCCeeeeeeccccccccCCHHHHHHHHHHh
Confidence 677889999999843110 1225556666778999988863 2 222 334445566654
|
| >d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: Class I aldolase domain: Deoxyribose-phosphate aldolase DeoC species: Aquifex aeolicus [TaxId: 63363]
Probab=81.95 E-value=7 Score=31.82 Aligned_cols=166 Identities=19% Similarity=0.269 Sum_probs=88.8
Q ss_pred EeEEEeccCcc--CHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChh------h-
Q 023494 60 VSPSILSANFA--KLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPE------Q- 129 (281)
Q Consensus 60 i~pSila~D~~--~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~------~- 129 (281)
|--++|..|.. ++++..+.+.+.|...+-+ .|..++..|+. .+. -+.--+.=|. .
T Consensus 8 ID~TlL~~~~t~~~i~~lc~~A~~~~~~aVcV-------------~P~~v~~a~~~l~~v--kv~tVigFP~G~~~~~~K 72 (225)
T d1mzha_ 8 IDNAALKPHLSEKEIEEFVLKSEELGIYAVCV-------------NPYHVKLASSIAKKV--KVCCVIGFPLGLNKTSVK 72 (225)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHHHTTCSEEEE-------------CGGGHHHHHHHCSSS--EEEEEESTTTCCSCHHHH
T ss_pred hhhccCCCCCCHHHHHHHHHHHHHhCCcEEEE-------------CHHHHHHHHhhccCC--ceEEEeccCCCCCcHHHH
Confidence 44556655432 4555556666666665543 22233333322 222 2333454442 1
Q ss_pred --HHHHHHHcCCCEEEEccccc-----ccccHHHHHHHHHHc--CCcEEEEECCCCCH---HHHHHhhc-----cCCEEE
Q 023494 130 --RVPDFIKAGADIVSVHCEQS-----STIHLHRTLNQIKDL--GAKAGVVLNPATSL---SAIECVLD-----VVDLVL 192 (281)
Q Consensus 130 --~i~~~~~aGAd~Itvh~Ea~-----~~~~i~~~l~~ik~~--G~k~Glai~p~t~i---e~~~~~l~-----~vD~Il 192 (281)
-++.+.+.|||=|-+-..-. ..+.+.+.++.+++. |..+=+.+ +|+. +.+..... .+|+|=
T Consensus 73 ~~E~~~Ai~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIl--Et~~L~~~ei~~a~~~a~~aGadfiK 150 (225)
T d1mzha_ 73 VKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIV--ETPYLNEEEIKKAVEICIEAGADFIK 150 (225)
T ss_dssp HHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEEC--CGGGCCHHHHHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhh--hhccCCHHHHHHHHHHHHHcccceEe
Confidence 24567889998776654311 112233444444443 32222333 2222 33333222 379884
Q ss_pred EEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCCcEE
Q 023494 193 IMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGANAL 251 (281)
Q Consensus 193 vmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGAD~~ 251 (281)
.-.||+.. ..+++.++.+++..+. ++.|=+.|||+ .+++..++++|+|-+
T Consensus 151 ---TSTG~~~~---gat~e~v~~m~~~~~~---~~~iKasGGIrt~~~a~~~i~~Ga~Ri 201 (225)
T d1mzha_ 151 ---TSTGFAPR---GTTLEEVRLIKSSAKG---RIKVKASGGIRDLETAISMIEAGADRI 201 (225)
T ss_dssp ---CCCSCSSS---CCCHHHHHHHHHHHTT---SSEEEEESSCCSHHHHHHHHHTTCSEE
T ss_pred ---ecCCCCCC---CCCHHHHHHHHHHhCC---CceEECcCCCCCHHHHHHHHHhchhhe
Confidence 23455422 2456677777777653 47888999999 889999999999954
|
| >d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Xylose isomerase-like family: IolI-like domain: Hypothetical protein Lmo2234 species: Listeria monocytogenes [TaxId: 1639]
Probab=81.66 E-value=2.6 Score=34.12 Aligned_cols=126 Identities=11% Similarity=0.052 Sum_probs=66.5
Q ss_pred EeEEEecc-CccCHHHHHHHHHHcCCCeEEEEeeeCccccc--ccCCHHHHHHcCcCCCCCeeE-EEEe---cCh-----
Q 023494 60 VSPSILSA-NFAKLGEQVKAVELAGCDWIHVDVMDGRFVPN--ITIGPLVVDALRPVTDLPLDV-HLMI---VEP----- 127 (281)
Q Consensus 60 i~pSila~-D~~~l~~~l~~l~~~G~d~iHiDImDG~fvpn--~~~G~~~I~~ir~~t~~~ida-HLmv---~dp----- 127 (281)
|+-|-+++ .-..+++.++.+.+.|.|.+++-..+. .+. -......++++-+.+++.+.. +... .++
T Consensus 4 i~i~~~tl~~~~~lee~l~~aa~~Gfd~iEl~~~~~--~~~~~~~~~~~~~~~~l~~~gl~i~~~~~~~~~~~~~~~~~~ 81 (275)
T d2g0wa1 4 ITISSYTLGTEVSFPKRVKVAAENGFDGIGLRAENY--VDALAAGLTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAE 81 (275)
T ss_dssp EEECGGGGTTTSCHHHHHHHHHHTTCSEEEEEHHHH--HHHHHTTCCHHHHHHHHHHTTCEEEEEECBCCCSSTTTCCHH
T ss_pred eEeeHhHhCCCCCHHHHHHHHHHhCCCEEEEccccc--cccccCcCCHHHHHHHHHHcCCceEEEeeccccCCCchhHHH
Confidence 44444444 446999999999999999988753332 121 123445554443335655432 2111 112
Q ss_pred -----hhHHHHHHHcCCCEEEEccccc-ccccHHHHHHHHHHcCCcEEE--EECCCC---CHHHHHHhhcc
Q 023494 128 -----EQRVPDFIKAGADIVSVHCEQS-STIHLHRTLNQIKDLGAKAGV--VLNPAT---SLSAIECVLDV 187 (281)
Q Consensus 128 -----~~~i~~~~~aGAd~Itvh~Ea~-~~~~i~~~l~~ik~~G~k~Gl--ai~p~t---~ie~~~~~l~~ 187 (281)
.+.++.+...|+..|.+|.-.. ..+...+.++++.+...+.|+ .+.+.+ ..+.+..+++.
T Consensus 82 ~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~l~~l~~~a~~~gi~le~~~~~~~~t~~~~~~l~~~ 152 (275)
T d2g0wa1 82 QQKKEQTTFHMARLFGVKHINCGLLEKIPEEQIIVALGELCDRAEELIIGLEFMPYSGVADLQAAWRVAEA 152 (275)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEECCCSCCCHHHHHHHHHHHHHHHTTSEEEEECCTTSSSCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCceEecCCCCchHHHHHHHHHHHHHHHHHhcCeeEeeeccCCCCCHHHHHHHHHH
Confidence 1345666788999999986431 112233333333333334444 444444 33445555543
|
| >d2mnra1 c.1.11.2 (A:133-359) Mandelate racemase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Enolase C-terminal domain-like family: D-glucarate dehydratase-like domain: Mandelate racemase species: Pseudomonas putida [TaxId: 303]
Probab=81.39 E-value=6.2 Score=31.38 Aligned_cols=119 Identities=9% Similarity=0.032 Sum_probs=73.1
Q ss_pred ecChhhH---HHHHHHcCCCEEEEcccccccccHHHHHHHHHH---cCCcEEEEECCCCCHHHHHHhhccC---CEEEEE
Q 023494 124 IVEPEQR---VPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKD---LGAKAGVVLNPATSLSAIECVLDVV---DLVLIM 194 (281)
Q Consensus 124 v~dp~~~---i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~---~G~k~Glai~p~t~ie~~~~~l~~v---D~Ilvm 194 (281)
..+++.. +..+.+.|...+=++.-..+.+.--+.++++|+ .+.++.+..|.....+...+++... ++..
T Consensus 10 ~d~~~~~~e~~~~~~~~G~~~~KikvG~~~~~~di~~i~~ir~~~g~~~~l~vDaN~~~~~~~A~~~~~~l~~~~~~~-- 87 (227)
T d2mnra1 10 LDGVKLATERAVTAAELGFRAVKTKIGYPALDQDLAVVRSIRQAVGDDFGIMVDYNQSLDVPAAIKRSQALQQEGVTW-- 87 (227)
T ss_dssp SCHHHHHHHHHHHHHHTTCSEEEEECCCSSHHHHHHHHHHHHHHHCTTSEEEEECTTCSCHHHHHHHHHHHHHHTCSE--
T ss_pred CCcHHHHHHHHHHHHHCCCCEEEEccCCCCHHHHHHHHHHHHHHhCCCcEEEEeccccCChHHHHHHHHHhhhchhhh--
Confidence 3455544 345567899999998521111222245566665 3566777778777777766665532 2111
Q ss_pred eecCCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEEecCCC-hhcHHHHHHcCC-cEEEEcc
Q 023494 195 SVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEVDGGVG-PKNAYKVIEAGA-NALVAGS 255 (281)
Q Consensus 195 sV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~VDGGI~-~e~i~~~~~aGA-D~~VvGS 255 (281)
-.|++.+..++-++++++.. +++|++|-.+. .++...+++.|+ |++..--
T Consensus 88 ------iEeP~~~~~~~~~~~l~~~~-----~ipia~gE~~~~~~~~~~~~~~~~~d~~~~d~ 139 (227)
T d2mnra1 88 ------IEEPTLQHDYEGHQRIQSKL-----NVPVQMGENWLGPEEMFKALSIGACRLAMPDA 139 (227)
T ss_dssp ------EECCSCTTCHHHHHHHHHTC-----SSCEEECTTCCSHHHHHHHHHTTCCSEECCBT
T ss_pred ------hcCcccccchhhhHHHHHHc-----CCccccCceeEeechhhhhHhcCceeeeeccc
Confidence 14677766666667766543 47898888877 777777777765 6665543
|
| >d1oyaa_ c.1.4.1 (A:) Old yellow enzyme (OYE) {Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: FMN-linked oxidoreductases family: FMN-linked oxidoreductases domain: Old yellow enzyme (OYE) species: Lager yeast (Saccharomyces pastorianus) [TaxId: 27292]
Probab=81.30 E-value=3 Score=36.84 Aligned_cols=41 Identities=7% Similarity=0.061 Sum_probs=30.4
Q ss_pred CCeEEEecCCC-hhc-HHHHHHcCCcEEEEcccccCCCCHHHH
Q 023494 226 NPWIEVDGGVG-PKN-AYKVIEAGANALVAGSAVFGAKDYAEA 266 (281)
Q Consensus 226 ~~~I~VDGGI~-~e~-i~~~~~aGAD~~VvGSaIf~a~dp~~~ 266 (281)
+.++.+-|||+ .+. ...+.+-++|.+-+|++++..+|....
T Consensus 317 ~~PVi~~G~i~~~~~~~~~i~~~~aDlV~~gR~liaDP~l~~K 359 (399)
T d1oyaa_ 317 KGPVIRAGNFALHPEVVREEVKDKRTLIGYGRFFISNPDLVDR 359 (399)
T ss_dssp CSCEEEESSCTTCHHHHHHHTTSTTEEEECCHHHHHCTTHHHH
T ss_pred CCCEEEECCCCChHHHHHHHHcCCCeEhHHHHHHHHCccHHHH
Confidence 35788899996 444 556666679999999999876765433
|
| >d1a04a2 c.23.1.1 (A:5-142) Nitrate/nitrite response regulator (NarL), receiver domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Nitrate/nitrite response regulator (NarL), receiver domain species: Escherichia coli [TaxId: 562]
Probab=80.85 E-value=6.1 Score=28.86 Aligned_cols=85 Identities=21% Similarity=0.171 Sum_probs=52.9
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcC-CCCCeeEEEEecChhhHHHHHHHcCCCEEEEcccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPV-TDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQ 148 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~-t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea 148 (281)
.+-++.++.+.+...|.+=+| -. .|.. =|.+++++||+. ++.++.+=-...++ .+...+.++||+....=...
T Consensus 35 ~~~~~al~~~~~~~~DlvllD---~~-mP~~-~G~el~~~ir~~~~~~~vivlt~~~~~-~~~~~a~~~Ga~~yl~Kp~~ 108 (138)
T d1a04a2 35 SNGEQGIELAESLDPDLILLD---LN-MPGM-NGLETLDKLREKSLSGRIVVFSVSNHE-EDVVTALKRGADGYLLKDME 108 (138)
T ss_dssp SSHHHHHHHHHHHCCSEEEEE---TT-STTS-CHHHHHHHHHHSCCCSEEEEEECCCCH-HHHHHHHHTTCSEEEETTCC
T ss_pred CCHHHHHHHHHhcCCCEEEEe---cC-CCCC-CHHHHHHHHHhhCCCCCEEEEEEECCH-HHHHHHHHcCCCEEEECCCC
Confidence 366777888887778876555 32 2433 388999999875 55666542222343 46778889999877666442
Q ss_pred cccccHHHHHHHHH
Q 023494 149 SSTIHLHRTLNQIK 162 (281)
Q Consensus 149 ~~~~~i~~~l~~ik 162 (281)
.+++.+.++.+.
T Consensus 109 --~~~L~~~i~~v~ 120 (138)
T d1a04a2 109 --PEDLLKALHQAA 120 (138)
T ss_dssp --HHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHH
Confidence 334444444443
|
| >d2cu0a1 c.1.5.1 (A:3-96,A:207-480) Inosine monophosphate dehydrogenase (IMPDH) {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Inosine monophosphate dehydrogenase (IMPDH) family: Inosine monophosphate dehydrogenase (IMPDH) domain: Inosine monophosphate dehydrogenase (IMPDH) species: Pyrococcus horikoshii [TaxId: 53953]
Probab=80.79 E-value=3.9 Score=35.83 Aligned_cols=122 Identities=18% Similarity=0.099 Sum_probs=76.8
Q ss_pred cCHHHHHHHHHHcCCCeEEEEeeeCcccccccCCHHHHHHcCcCCCCCeeEEEEecChhhHHHHHHHcCCCEEEEccccc
Q 023494 70 AKLGEQVKAVELAGCDWIHVDVMDGRFVPNITIGPLVVDALRPVTDLPLDVHLMIVEPEQRVPDFIKAGADIVSVHCEQS 149 (281)
Q Consensus 70 ~~l~~~l~~l~~~G~d~iHiDImDG~fvpn~~~G~~~I~~ir~~t~~~idaHLmv~dp~~~i~~~~~aGAd~Itvh~Ea~ 149 (281)
..+++ +..+.++|+|+|-+|+..||-.. -.+.++.+|+..+.++.+ --|.+++.. ....|||.|-+..-..
T Consensus 116 ~~~~r-~~~l~~aGvd~ivID~A~Gh~~~----~i~~lK~ir~~~~~~vIa-GNVaT~e~~---~~l~gaD~VkVGIG~G 186 (368)
T d2cu0a1 116 FDIKR-AIELDKAGVDVIVVDTAHAHNLK----AIKSMKEMRQKVDADFIV-GNIANPKAV---DDLTFADAVKVGIGPG 186 (368)
T ss_dssp TCHHH-HHHHHHTTCSEEEEECSCCCCHH----HHHHHHHHHHTCCSEEEE-EEECCHHHH---TTCTTSSEEEECSSCS
T ss_pred HHHHH-HHHHHHcCCCEEEecCcccchhh----hhhhhhhhhhhcccceee-ccccCHHHH---HhhhcCcceeecccCc
Confidence 34444 66778899999999999986321 245677777655555444 334554433 2346999999885422
Q ss_pred c---c--------c---cHHHHHHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCC
Q 023494 150 S---T--------I---HLHRTLNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGF 200 (281)
Q Consensus 150 ~---~--------~---~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~ 200 (281)
+ + + -+.++.+..+++|..+.-.=.-.++-...+.+.-.+|+|++.+.-.|.
T Consensus 187 s~CTTr~~tGvG~Pq~sAi~e~~~~~~~~~~~iiADGGi~~~Gdi~KAla~GAd~VMlG~~lAg~ 251 (368)
T d2cu0a1 187 SICTTRIVAGVGVPQITAVAMVADRAQEYGLYVIADGGIRYSGDIVKAIAAGADAVMLGNLLAGT 251 (368)
T ss_dssp TTBCHHHHTCCCCCHHHHHHHHHHHHHHHTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTTTTB
T ss_pred ccccchhhcccccchHHHHHHHHHHHhccCCeeEecCCCCcCChhheeeeeccceeeccchhccc
Confidence 1 0 1 144566667788876544434446667777777789999987665443
|
| >d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: Aldolase family: NeuB-like domain: Capsule biosynthesis protein SiaC, N-terminal domain species: Neisseria meningitidis [TaxId: 487]
Probab=80.55 E-value=9.8 Score=31.46 Aligned_cols=172 Identities=10% Similarity=0.083 Sum_probs=102.7
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEEeee--Cccccc-------------------ccCCHHHHHHcCcCC-CCCeeEEEEe
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVDVMD--GRFVPN-------------------ITIGPLVVDALRPVT-DLPLDVHLMI 124 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiDImD--G~fvpn-------------------~~~G~~~I~~ir~~t-~~~idaHLmv 124 (281)
+|+....+-++.+.++|+|.+-+=..+ --+.++ ..+..+....+.+++ ...++.-.-+
T Consensus 31 Gd~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~ 110 (280)
T d2zdra2 31 GSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTP 110 (280)
T ss_dssp TCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCcccccc
Confidence 456666677778889999987664331 111111 234445555554432 1233332244
Q ss_pred cChhhHHHHHHHcCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECCCCCHHHHHHh---hc--cCCEEEEEee--c
Q 023494 125 VEPEQRVPDFIKAGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNPATSLSAIECV---LD--VVDLVLIMSV--N 197 (281)
Q Consensus 125 ~dp~~~i~~~~~aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p~t~ie~~~~~---l~--~vD~IlvmsV--~ 197 (281)
-|+. -++.+.+.|++.+=++--. ..+ ..+++.+.+.++.+-+.+...+ .++++.. +. ..++++++++ +
T Consensus 111 fd~~-s~~~~~~~~~~~~KIaS~d--~~n-~~Li~~i~k~~kpiiiStG~s~-~~EI~~av~~~~~~~~~~~llhc~s~Y 185 (280)
T d2zdra2 111 FSRA-AALRLQRMDIPAYKIGSGE--CNN-YPLIKLVASFGKPIILSTGMNS-IESIKKSVEIIREAGVPYALLHCTNIY 185 (280)
T ss_dssp CSHH-HHHHHHHHTCSCEEECGGG--TTC-HHHHHHHHTTCSCEEEECTTCC-HHHHHHHHHHHHHHTCCEEEEECCCCS
T ss_pred chhh-cccccccccccceeccchh--ccc-cHhhhhhhhccCceeecccccc-hhHhhhhhhhhhhccccceEEEeeccC
Confidence 5543 4566788899999988653 223 3589999999999888887654 3333333 32 3677777665 3
Q ss_pred CCCCCCccchhHHHHHHHHHHHhhhcCCCCeEEE-ecCCChhcHHHHHHcCCcEE
Q 023494 198 PGFGGQSFIESQVKKISDLRRMCLEKGVNPWIEV-DGGVGPKNAYKVIEAGANAL 251 (281)
Q Consensus 198 pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~I~V-DGGI~~e~i~~~~~aGAD~~ 251 (281)
|. +....-+.+|..+++..+. +.|.- |=..+.+..-..+..||+++
T Consensus 186 Pt----~~~~~nL~~i~~lk~~f~~----~~iG~SdH~~g~~~~~~Ava~GA~~I 232 (280)
T d2zdra2 186 PT----PYEDVRLGGMNDLSEAFPD----AIIGLSDHTLDNYACLGAVALGGSIL 232 (280)
T ss_dssp SC----CGGGCCTTHHHHHHHHCTT----SEEEEECCSSSSHHHHHHHHTTCCEE
T ss_pred cc----ccccccccccceeeccccc----cceeecCcccchhhHHHHHHCCCeEE
Confidence 43 2333447778888877642 34543 33344555667788999966
|
| >d1wdda1 c.1.14.1 (A:151-475) Ribulose 1,5-bisphosphate carboxylase-oxygenase {Rice (Oryza sativa) [TaxId: 4530]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: TIM beta/alpha-barrel superfamily: RuBisCo, C-terminal domain family: RuBisCo, large subunit, C-terminal domain domain: Ribulose 1,5-bisphosphate carboxylase-oxygenase species: Rice (Oryza sativa) [TaxId: 4530]
Probab=80.40 E-value=3 Score=36.06 Aligned_cols=201 Identities=12% Similarity=0.039 Sum_probs=104.6
Q ss_pred cCccCHHHHHHHHHHcCCCeEEEE--eeeCccccc---ccCCHHHHHHcCcCCCC--CeeEEEEecChhhHH---HHHHH
Q 023494 67 ANFAKLGEQVKAVELAGCDWIHVD--VMDGRFVPN---ITIGPLVVDALRPVTDL--PLDVHLMIVEPEQRV---PDFIK 136 (281)
Q Consensus 67 ~D~~~l~~~l~~l~~~G~d~iHiD--ImDG~fvpn---~~~G~~~I~~ir~~t~~--~idaHLmv~dp~~~i---~~~~~ 136 (281)
+++..+.+.+..+..+|+|.|-=| +.|..|.|- +....+.+++-.+.|+. -+-+.+--.++.+.. +.+.+
T Consensus 30 lsp~~~a~~~~~~~~GGvD~IKDDE~l~~~~~~p~~eRv~~~~~av~~a~~eTG~~k~y~~nit~~~~~em~~ra~~a~e 109 (325)
T d1wdda1 30 LSAKNYGRACYECLRGGLDFTKDDENVNSQPFMRWRDRFVFCAEAIYKSQAETGEIKGHYLNATAGTCEEMIKRAVFARE 109 (325)
T ss_dssp CCHHHHHHHHHHHHHTTCSEEECCTTCSSBTTBCHHHHHHHHHHHHHHHHHHHSSCCEEEEECCCSSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCceeeCCcccCCCCCcchHHHHHHHHHHHHHHHHhhCCceeEEeccCCCCHHHHHHHHHHHHH
Confidence 566788888999999999987544 445556653 12333333433333543 233322223455444 44678
Q ss_pred cCCCEEEEcccccccccHHHHHHHHHHcCCcEEEEECC----------CC--CHHHHHHhhc--cCCEEEEEeecCCCCC
Q 023494 137 AGADIVSVHCEQSSTIHLHRTLNQIKDLGAKAGVVLNP----------AT--SLSAIECVLD--VVDLVLIMSVNPGFGG 202 (281)
Q Consensus 137 aGAd~Itvh~Ea~~~~~i~~~l~~ik~~G~k~Glai~p----------~t--~ie~~~~~l~--~vD~IlvmsV~pG~~G 202 (281)
+|++.+.+-.-.....-+..+.+..++.++- +-.++ +. +...+.++.. .+|.+.+ |+.+|
T Consensus 110 ~G~~~~mi~~~~~G~~a~~~l~~~~~~~~l~--ih~Hra~~ga~tr~~~~Gis~~vl~kl~RLaGaD~ih~----~~~~G 183 (325)
T d1wdda1 110 LGVPIVMHDYLTGGFTANTSLAHYCRDNGLL--LHIHRAMHAVIDRQKNHGMHFRVLAKALRMSGGDHIHA----GTVVG 183 (325)
T ss_dssp HTCSEEEEEHHHHCHHHHHHHHHHHHHHTCE--EEEECTTHHHHHSCSSSEECHHHHHHHHHHHCCSEEEC----CCSSS
T ss_pred cCCCEEEEecccccHHHHHHHHHhhhhcCce--eecccccccccccCCCCCccHHHHHHHHHHcCCCcccc----Ccccc
Confidence 9999988764421111122233333444443 22222 21 1223445443 4898865 34433
Q ss_pred C-ccchhHHHH-HHHHHHHhh----h---------cCC-CCeEEEecCCChhcHHHHH-HcCCcEEEE-cccccCCCC-H
Q 023494 203 Q-SFIESQVKK-ISDLRRMCL----E---------KGV-NPWIEVDGGVGPKNAYKVI-EAGANALVA-GSAVFGAKD-Y 263 (281)
Q Consensus 203 Q-~f~~~~l~k-I~~lr~l~~----~---------~~~-~~~I~VDGGI~~e~i~~~~-~aGAD~~Vv-GSaIf~a~d-p 263 (281)
. .+.++.... .+.++...- . .+. .+.=..-||+++.+++.+. ..|-|+++. |.+|++.++ +
T Consensus 184 k~~~~~~~~~~~~~~l~~~~~~~d~~~~~~~~q~~~~~k~~~Pv~sGG~~~g~vp~~~~~~G~D~il~~GGGi~gHP~G~ 263 (325)
T d1wdda1 184 KLEGEREMTLGFVDLLRDDFIEKDRARGIFFTQDWVSMPGVIPVASGGIHVWHMPALTEIFGDDSVLQFGGGTLGHPWGN 263 (325)
T ss_dssp SBCCCHHHHHHHHHHHHCSEECCBGGGTBCSCEECTTCCCCEEEEESSCCGGGHHHHHHHHCSSSEEECSHHHHTSTTCH
T ss_pred CcCCCHHHHHHHHHHHHhhhcccccccCccccCcccCCCCeeeecCCCCCHhHHHHHHHhcCCcEEEEcCcceecCCCcc
Confidence 2 223333322 333332100 0 000 1223479999999999764 467776654 788998754 6
Q ss_pred HHHHHHHHHh
Q 023494 264 AEAIKGIKTS 273 (281)
Q Consensus 264 ~~~~~~l~~~ 273 (281)
++=++.+|+.
T Consensus 264 aAGa~A~RqA 273 (325)
T d1wdda1 264 APGAAANRVA 273 (325)
T ss_dssp HHHHHHHHHH
T ss_pred cchHHHHHHH
Confidence 6666666653
|
| >d1w25a1 c.23.1.1 (A:2-140) Response regulator PleD, receiver domain {Caulobacter crescentus [TaxId: 155892]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Flavodoxin-like superfamily: CheY-like family: CheY-related domain: Response regulator PleD, receiver domain species: Caulobacter crescentus [TaxId: 155892]
Probab=80.07 E-value=7.9 Score=28.30 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=57.1
Q ss_pred HHHHHHcCCcEEEEECCCCCHHHHHHhhccCCEEEEEeecCCCCCCccchhHHHHHHHHHHHhhhcCCCCe-EEEecCCC
Q 023494 158 LNQIKDLGAKAGVVLNPATSLSAIECVLDVVDLVLIMSVNPGFGGQSFIESQVKKISDLRRMCLEKGVNPW-IEVDGGVG 236 (281)
Q Consensus 158 l~~ik~~G~k~Glai~p~t~ie~~~~~l~~vD~IlvmsV~pG~~GQ~f~~~~l~kI~~lr~l~~~~~~~~~-I~VDGGI~ 236 (281)
-+.+++.|..+-.+-+...-++.+.+. .+|.|++=-.-||..| ++-++.+|..- ...+++ |.+.|--+
T Consensus 18 ~~~L~~~g~~v~~a~~~~eal~~~~~~--~~dlil~D~~~p~~~G-------~~~~~~ir~~~--~~~~~piI~lt~~~~ 86 (139)
T d1w25a1 18 EAKLTAEYYEVSTAMDGPTALAMAARD--LPDIILLDVMMPGMDG-------FTVCRKLKDDP--TTRHIPVVLITALDG 86 (139)
T ss_dssp HHHHHHTTCEEEEESSHHHHHHHHHHH--CCSEEEEESCCSSSCH-------HHHHHHHHHST--TTTTSCEEEEECSSC
T ss_pred HHHHHHCCCEEEEEccchhhhhhhhcc--cceeeeeeccccCCCc-------hHHHHHhhhcc--cccCCCEEEEEcCCC
Confidence 334466788776665544333333332 4787765333466665 23334444421 123455 45577777
Q ss_pred hhcHHHHHHcCCcEEEEcccccCCCCHHHHHHHHHH
Q 023494 237 PKNAYKVIEAGANALVAGSAVFGAKDYAEAIKGIKT 272 (281)
Q Consensus 237 ~e~i~~~~~aGAD~~VvGSaIf~a~dp~~~~~~l~~ 272 (281)
.+...++.++|||-++. +.-++.+-..+++.
T Consensus 87 ~~~~~~a~~~Ga~dyl~-----KP~~~~~L~~~i~~ 117 (139)
T d1w25a1 87 RGDRIQGLESGASDFLT-----KPIDDVMLFARVRS 117 (139)
T ss_dssp HHHHHHHHHHTCCEEEE-----SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCEEEE-----CCCCHHHHHHHHHH
Confidence 88888999999998865 45566655555544
|