Citrus Sinensis ID: 023945

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-----
MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
cccccHHHHcccccccccccccccccccccccccccccEEEHHHHHHHHHHHHHHHcccEEEEcccccccccccccccHHHHHcccccccccHHHHHHHHHHHHHHHcccccEEEEEccccHHcHHHHHHHHHHHHHHHcccccccccEEEEccccccccccccccccHHHHHHcccccEEEccccHHHHHHHHHHHHcccccEEEEccccccccccccccccccccccccEEEEEEcccEEEEEEcHHHHHHHHHHHHHHHccccEEEEEcccc
cHHHHHHHcHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccEEEEEcccccccEEEccHHHHHHHccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccHccccHHHHHHcccccEEEEcccHHHHHHHHHHHHcccccEEEEcHHHHHHHHHHcccccccEEEcccEEEEEccccEEEEEHHHHHHHHHHHHHHHHHcccEEEEEEcEcc
MASGLRRFVGSLSRRNLSTACANKQliqqhdggvgsgksLNLYSAINQALHIAletdprayvfgedvgfggvfrcttgladrfgksrvfntplceqGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRyrsgnqfncggltvrapygavghgghyhsqspeaffchvpglkvviprsprqaKGLLLscirdpnpvvffepkwlyrlsveevpeddymlplseaeviregsditlvGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
masglrrfVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLlscirdpnpvvFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYvfgedvgfggvfRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
*******************ACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENV**
*****************************************LYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
**********************************GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASGLRRFVGSLSRRNLSTACANKQLIQQHDGGVGSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query275 2.2.26 [Sep-21-2011]
Q55FN7370 2-oxoisovalerate dehydrog yes no 0.829 0.616 0.679 3e-93
P35738390 2-oxoisovalerate dehydrog yes no 0.861 0.607 0.668 3e-91
Q6P3A8390 2-oxoisovalerate dehydrog yes no 0.861 0.607 0.668 5e-91
P21839392 2-oxoisovalerate dehydrog yes no 0.861 0.604 0.659 1e-90
P21953392 2-oxoisovalerate dehydrog yes no 0.861 0.604 0.659 3e-90
P37941327 2-oxoisovalerate dehydrog yes no 0.807 0.678 0.522 1e-59
Q5SLR3324 2-oxoisovalerate dehydrog no no 0.84 0.712 0.532 4e-59
Q72GU2324 2-oxoisovalerate dehydrog no no 0.84 0.712 0.527 4e-58
P35488327 Pyruvate dehydrogenase E1 yes no 0.789 0.663 0.470 9e-55
Q9I1M1350 2-oxoisovalerate dehydrog yes no 0.814 0.64 0.439 2e-53
>sp|Q55FN7|ODBB_DICDI 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=bkdB PE=3 SV=1 Back     alignment and function desciption
 Score =  341 bits (875), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 155/228 (67%), Positives = 189/228 (82%)

Query: 35  GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
           G  + +NL+ AIN  + IA++ D +A VFGEDVGFGGVFRCT GL D++G SRVFNTPLC
Sbjct: 44  GEKQKMNLFQAINNGMDIAMQKDSKAVVFGEDVGFGGVFRCTVGLRDKYGASRVFNTPLC 103

Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           EQGI GFAIGLAA G   IAEIQFADYIFPAFDQIVNEAAK+RYRSG QF+CG LT+R+P
Sbjct: 104 EQGIAGFAIGLAAQGATPIAEIQFADYIFPAFDQIVNEAAKYRYRSGGQFDCGSLTIRSP 163

Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
           YGAVGHGGHYHSQSPE++F H PGLKVVIP +P +AKGLLL+ IR+ +PV+FFEPK +YR
Sbjct: 164 YGAVGHGGHYHSQSPESYFGHTPGLKVVIPSTPIEAKGLLLASIREKDPVIFFEPKLMYR 223

Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
            +VEEVP  DY +PL +A +++EG DIT++GWGAQ+ ++ QA   AE+
Sbjct: 224 SAVEEVPIGDYEIPLGKARIVKEGKDITIIGWGAQMRVLLQAVNMAEE 271
The branched-chain alpha-keto dehydrogenase complex catalyzes the overall conversion of alpha-keto acids to acyl-CoA and CO(2). It contains multiple copies of three enzymatic components: branched-chain alpha-keto acid decarboxylase (E1), lipoamide acyltransferase (E2) and lipoamide dehydrogenase (E3).
Dictyostelium discoideum (taxid: 44689)
EC: 1EC: .EC: 2EC: .EC: 4EC: .EC: 4
>sp|P35738|ODBB_RAT 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Rattus norvegicus GN=Bckdhb PE=1 SV=3 Back     alignment and function description
>sp|Q6P3A8|ODBB_MOUSE 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Mus musculus GN=Bckdhb PE=2 SV=2 Back     alignment and function description
>sp|P21839|ODBB_BOVIN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Bos taurus GN=BCKDHB PE=1 SV=2 Back     alignment and function description
>sp|P21953|ODBB_HUMAN 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial OS=Homo sapiens GN=BCKDHB PE=1 SV=2 Back     alignment and function description
>sp|P37941|ODBB_BACSU 2-oxoisovalerate dehydrogenase subunit beta OS=Bacillus subtilis (strain 168) GN=bfmBAB PE=1 SV=1 Back     alignment and function description
>sp|Q5SLR3|ODBB_THET8 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB8 / ATCC 27634 / DSM 579) GN=TTHA0230 PE=1 SV=1 Back     alignment and function description
>sp|Q72GU2|ODBB_THET2 2-oxoisovalerate dehydrogenase subunit beta OS=Thermus thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039) GN=TT_C1756 PE=3 SV=1 Back     alignment and function description
>sp|P35488|ODPB_ACHLA Pyruvate dehydrogenase E1 component subunit beta OS=Acholeplasma laidlawii GN=pdhB PE=1 SV=1 Back     alignment and function description
>sp|Q9I1M1|ODBB_PSEAE 2-oxoisovalerate dehydrogenase subunit beta OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=bkdA2 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
357469283358 2-oxoisovalerate dehydrogenase subunit b 0.949 0.729 0.843 1e-129
388511999358 unknown [Medicago truncatula] 0.949 0.729 0.843 1e-128
224075962368 predicted protein [Populus trichocarpa] 0.985 0.736 0.815 1e-127
449452632356 PREDICTED: 2-oxoisovalerate dehydrogenas 0.963 0.744 0.824 1e-127
356504362358 PREDICTED: 2-oxoisovalerate dehydrogenas 0.930 0.715 0.850 1e-126
358248148356 uncharacterized protein LOC100802853 [Gl 0.923 0.713 0.854 1e-125
297834170360 hypothetical protein ARALYDRAFT_478729 [ 0.974 0.744 0.811 1e-125
15231242358 2-oxoisovalerate dehydrogenase E1 compon 0.858 0.659 0.902 1e-124
297847914352 BCDH BETA1 [Arabidopsis lyrata subsp. ly 0.858 0.670 0.889 1e-124
3746568352 branched-chain alpha-keto acid decarboxy 0.858 0.670 0.889 1e-124
>gi|357469283|ref|XP_003604926.1| 2-oxoisovalerate dehydrogenase subunit beta [Medicago truncatula] gi|355505981|gb|AES87123.1| 2-oxoisovalerate dehydrogenase subunit beta [Medicago truncatula] Back     alignment and taxonomy information
 Score =  465 bits (1197), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 226/268 (84%), Positives = 242/268 (90%), Gaps = 7/268 (2%)

Query: 5   LRRFVGSLSRRNLSTACANKQLIQQHDGGVGSG-KSLNLYSAINQALHIALETDPRAYVF 63
           L ++V  +SRR LST+      I Q D    +G KSLNLYSA+NQALHIAL+TDPRAYVF
Sbjct: 8   LGKWVSLVSRRGLSTS------IVQKDAAAENGVKSLNLYSAVNQALHIALDTDPRAYVF 61

Query: 64  GEDVGFGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQFADYIF 123
           GEDVGFGGVFRCTTGLADRFGK RVFNTPLCEQGIVGF IGLAAMGNRAIAEIQFADYIF
Sbjct: 62  GEDVGFGGVFRCTTGLADRFGKKRVFNTPLCEQGIVGFGIGLAAMGNRAIAEIQFADYIF 121

Query: 124 PAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVI 183
           PAFDQIVNEAAKFRYRSGNQFNCGGLT+R PYGAVGHGGHYHSQSPEAFFCHVPG+KVVI
Sbjct: 122 PAFDQIVNEAAKFRYRSGNQFNCGGLTIRTPYGAVGHGGHYHSQSPEAFFCHVPGIKVVI 181

Query: 184 PRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITL 243
           PRSP++AKGLLLSCIRDPNP+VFFEPKWLYRL+VEEVPE DYMLPLSEAEVIREGSDITL
Sbjct: 182 PRSPKEAKGLLLSCIRDPNPIVFFEPKWLYRLAVEEVPEGDYMLPLSEAEVIREGSDITL 241

Query: 244 VGWGAQLSIMEQACLDAEKVCDSFSLLE 271
           VGWGAQLSIMEQAC+DAEK   S  L++
Sbjct: 242 VGWGAQLSIMEQACVDAEKEGISCELID 269

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|388511999|gb|AFK44061.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224075962|ref|XP_002304849.1| predicted protein [Populus trichocarpa] gi|222842281|gb|EEE79828.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449452632|ref|XP_004144063.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cucumis sativus] gi|449493568|ref|XP_004159353.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356504362|ref|XP_003520965.1| PREDICTED: 2-oxoisovalerate dehydrogenase subunit beta, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|358248148|ref|NP_001239825.1| uncharacterized protein LOC100802853 [Glycine max] gi|255641168|gb|ACU20861.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|297834170|ref|XP_002884967.1| hypothetical protein ARALYDRAFT_478729 [Arabidopsis lyrata subsp. lyrata] gi|297330807|gb|EFH61226.1| hypothetical protein ARALYDRAFT_478729 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15231242|ref|NP_187954.1| 2-oxoisovalerate dehydrogenase E1 component, beta subunit [Arabidopsis thaliana] gi|7021286|gb|AAF35281.1|AF145452_1 branched chain alpha-keto acid dehydrogenase E1 beta subunit [Arabidopsis thaliana] gi|9280297|dbj|BAB01752.1| branched chain alpha-keto acid dehydrogenase E1 beta subunit [Arabidopsis thaliana] gi|90093294|gb|ABD85160.1| At3g13450 [Arabidopsis thaliana] gi|110738414|dbj|BAF01133.1| branched chain alpha-keto acid dehydrogenase E1 beta subunit [Arabidopsis thaliana] gi|332641836|gb|AEE75357.1| 2-oxoisovalerate dehydrogenase E1 component, beta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297847914|ref|XP_002891838.1| BCDH BETA1 [Arabidopsis lyrata subsp. lyrata] gi|297337680|gb|EFH68097.1| BCDH BETA1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|3746568|gb|AAC64005.1| branched-chain alpha-keto acid decarboxylase E1 beta subunit [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query275
TAIR|locus:2092835358 DIN4 "DARK INDUCIBLE 4" [Arabi 0.858 0.659 0.851 6.3e-108
TAIR|locus:2193889352 BCDH BETA1 "branched-chain alp 0.858 0.670 0.838 2.1e-107
UNIPROTKB|F1NK15392 BCKDHB "Uncharacterized protei 0.825 0.579 0.638 7.9e-78
DICTYBASE|DDB_G0268020370 bkdB "branched-chain alpha-ket 0.861 0.640 0.609 1.3e-77
UNIPROTKB|F1NXT5317 BCKDHB "Uncharacterized protei 0.829 0.719 0.631 2.1e-77
UNIPROTKB|E2QYD3387 BCKDHB "Uncharacterized protei 0.861 0.612 0.626 2.1e-77
MGI|MGI:88137390 Bckdhb "branched chain ketoaci 0.861 0.607 0.626 2.1e-77
RGD|2197390 Bckdhb "branched chain keto ac 0.861 0.607 0.626 2.1e-77
UNIPROTKB|P35738390 Bckdhb "2-oxoisovalerate dehyd 0.861 0.607 0.626 2.1e-77
UNIPROTKB|P21839392 BCKDHB "2-oxoisovalerate dehyd 0.861 0.604 0.617 3.4e-77
TAIR|locus:2092835 DIN4 "DARK INDUCIBLE 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1067 (380.7 bits), Expect = 6.3e-108, P = 6.3e-108
 Identities = 201/236 (85%), Positives = 214/236 (90%)

Query:    36 SGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLCE 95
             SGKS+NLYSAINQALHIALETDPR+Y            RCTTGLA+RFGKSRVFNTPLCE
Sbjct:    34 SGKSMNLYSAINQALHIALETDPRSYVFGEDVGFGGVFRCTTGLAERFGKSRVFNTPLCE 93

Query:    96 QGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPY 155
             QGIVGF IGLAAMGNR IAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLT+RAPY
Sbjct:    94 QGIVGFGIGLAAMGNRVIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTIRAPY 153

Query:   156 GAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYRL 215
             GAVGHGGHYHSQSPEAFFCHVPG+KVVIPRSPR+AKGLLLS IRDPNPVVFFEPKWLYR 
Sbjct:   154 GAVGHGGHYHSQSPEAFFCHVPGIKVVIPRSPREAKGLLLSSIRDPNPVVFFEPKWLYRQ 213

Query:   216 SVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLE 271
             +VE+VPEDDYM+PLSEAEV+REGSDITLVGWGAQL+IMEQACLDAE    S  L++
Sbjct:   214 AVEDVPEDDYMIPLSEAEVMREGSDITLVGWGAQLTIMEQACLDAENEGISCELID 269
GO:0003824 "catalytic activity" evidence=IEA
GO:0003863 "3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity" evidence=ISS
GO:0005739 "mitochondrion" evidence=ISM
GO:0008152 "metabolic process" evidence=IEA
GO:0009744 "response to sucrose stimulus" evidence=RCA
GO:0009750 "response to fructose stimulus" evidence=RCA
TAIR|locus:2193889 BCDH BETA1 "branched-chain alpha-keto acid decarboxylase E1 beta subunit" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NK15 BCKDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0268020 bkdB "branched-chain alpha-keto acid dehydrogenase E1 beta chain" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|F1NXT5 BCKDHB "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYD3 BCKDHB "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
MGI|MGI:88137 Bckdhb "branched chain ketoacid dehydrogenase E1, beta polypeptide" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|2197 Bckdhb "branched chain keto acid dehydrogenase E1, beta polypeptide" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P35738 Bckdhb "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|P21839 BCKDHB "2-oxoisovalerate dehydrogenase subunit beta, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P37941ODBB_BACSU1, ., 2, ., 4, ., 40.52230.80720.6788yesno
Q6P3A8ODBB_MOUSE1, ., 2, ., 4, ., 40.66800.86180.6076yesno
P35738ODBB_RAT1, ., 2, ., 4, ., 40.66800.86180.6076yesno
P21839ODBB_BOVIN1, ., 2, ., 4, ., 40.65960.86180.6045yesno
P21953ODBB_HUMAN1, ., 2, ., 4, ., 40.65960.86180.6045yesno
Q55FN7ODBB_DICDI1, ., 2, ., 4, ., 40.67980.82900.6162yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer1.2.40.921

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
fgenesh2_kg.3__1430__AT3G13450.1
annotation not avaliable (360 aa)
(Arabidopsis lyrata)
Predicted Functional Partners:
fgenesh1_pg.C_scaffold_6000748
annotation not avaliable (472 aa)
••••••• 0.946
fgenesh1_pm.C_scaffold_1001813
annotation not avaliable (472 aa)
••••••• 0.946
fgenesh2_kg.1__125__AT1G01090.1
annotation not avaliable (432 aa)
•••  •• 0.884
fgenesh2_kg.2__448__AT1G59900.1
annotation not avaliable (389 aa)
••• ••• 0.880
scaffold_300800.1
annotation not avaliable (484 aa)
• •• •• 0.874
scaffold_102761.1
annotation not avaliable (393 aa)
•••  •• 0.844
fgenesh2_kg.1__3892__AT1G48030.2
annotation not avaliable (505 aa)
•  • •• 0.721
scaffold_302028.1
annotation not avaliable (507 aa)
•    •• 0.710
fgenesh2_kg.1__3551__AT1G34430.1
annotation not avaliable (461 aa)
• •  •• 0.643
scaffold_500466.1
annotation not avaliable (482 aa)
• •  •• 0.589

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
PTZ00182355 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydro 1e-137
COG0022324 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogena 1e-115
cd07036167 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PY 4e-98
PRK09212327 PRK09212, PRK09212, pyruvate dehydrogenase subunit 2e-63
CHL00144327 CHL00144, odpB, pyruvate dehydrogenase E1 componen 1e-58
PLN02683356 PLN02683, PLN02683, pyruvate dehydrogenase E1 comp 2e-52
PRK11892464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 3e-52
pfam02779172 pfam02779, Transket_pyr, Transketolase, pyrimidine 5e-45
smart00861136 smart00861, Transket_pyr, Transketolase, pyrimidin 2e-39
cd07033156 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) bin 8e-12
PRK12571641 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate 5e-10
COG1154627 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [ 2e-09
COG3958312 COG3958, COG3958, Transketolase, C-terminal subuni 1e-08
TIGR00204617 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate syn 9e-08
PRK05444580 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate 1e-06
TIGR00239929 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenas 1e-05
PLN02225 701 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate 2e-05
cd06586154 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding 1e-04
pfam02780124 pfam02780, Transketolase_C, Transketolase, C-termi 0.002
COG0567906 COG0567, SucA, 2-oxoglutarate dehydrogenase comple 0.002
>gnl|CDD|185502 PTZ00182, PTZ00182, 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information 
 Score =  389 bits (1002), Expect = e-137
 Identities = 139/229 (60%), Positives = 169/229 (73%), Gaps = 2/229 (0%)

Query: 35  GSGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPL 93
           G+   +N+  AIN AL   L  DP+ +V GEDV  +GGV++CT GL D++G  RVF+TP+
Sbjct: 30  GATVKMNVREAINSALDEELARDPKVFVLGEDVAQYGGVYKCTKGLLDKYGPDRVFDTPI 89

Query: 94  CEQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRA 153
            EQG  GFAIG A  G R IAE  FAD+IFPAFDQIVNEAAK+RY SG QF+C  + +R 
Sbjct: 90  TEQGFAGFAIGAAMNGLRPIAEFMFADFIFPAFDQIVNEAAKYRYMSGGQFDCP-IVIRG 148

Query: 154 PYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLY 213
           P GAVGHGG YHSQS EA+F HVPGLKVV P  P  AKGLL + IRDPNPVVFFEPK LY
Sbjct: 149 PNGAVGHGGAYHSQSFEAYFAHVPGLKVVAPSDPEDAKGLLKAAIRDPNPVVFFEPKLLY 208

Query: 214 RLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
           R SVE VPE DY LPL +A+V+REG D+T+VG+G+Q+ +  +A  +  K
Sbjct: 209 RESVEVVPEADYTLPLGKAKVVREGKDVTIVGYGSQVHVALKAAEELAK 257

Length = 355
>gnl|CDD|223101 COG0022, AcoB, Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|132919 cd07036, TPP_PYR_E1-PDHc-beta_like, Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>gnl|CDD|169719 PRK09212, PRK09212, pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>gnl|CDD|177066 CHL00144, odpB, pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>gnl|CDD|215368 PLN02683, PLN02683, pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|217226 pfam02779, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|214865 smart00861, Transket_pyr, Transketolase, pyrimidine binding domain Back     alignment and domain information
>gnl|CDD|132916 cd07033, TPP_PYR_DXS_TK_like, Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>gnl|CDD|183601 PRK12571, PRK12571, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|224076 COG1154, Dxs, Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>gnl|CDD|226467 COG3958, COG3958, Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|129308 TIGR00204, dxs, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|235470 PRK05444, PRK05444, 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>gnl|CDD|161785 TIGR00239, 2oxo_dh_E1, 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>gnl|CDD|177870 PLN02225, PLN02225, 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>gnl|CDD|132915 cd06586, TPP_enzyme_PYR, Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>gnl|CDD|217227 pfam02780, Transketolase_C, Transketolase, C-terminal domain Back     alignment and domain information
>gnl|CDD|223641 COG0567, SucA, 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 275
COG0022324 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
CHL00144327 odpB pyruvate dehydrogenase E1 component beta subu 100.0
PTZ00182355 3-methyl-2-oxobutanate dehydrogenase; Provisional 100.0
COG3958312 Transketolase, C-terminal subunit [Carbohydrate tr 100.0
PRK09212327 pyruvate dehydrogenase subunit beta; Validated 100.0
PLN02683356 pyruvate dehydrogenase E1 component subunit beta 100.0
PRK11892464 pyruvate dehydrogenase subunit beta; Provisional 100.0
KOG0524359 consensus Pyruvate dehydrogenase E1, beta subunit 100.0
PLN02225701 1-deoxy-D-xylulose-5-phosphate synthase 100.0
PLN02234641 1-deoxy-D-xylulose-5-phosphate synthase 100.0
COG1154627 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme m 100.0
PLN02582677 1-deoxy-D-xylulose-5-phosphate synthase 100.0
KOG0525362 consensus Branched chain alpha-keto acid dehydroge 100.0
TIGR00204617 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP s 100.0
PRK12571641 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK12315581 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK05444580 1-deoxy-D-xylulose-5-phosphate synthase; Provision 100.0
PRK12753663 transketolase; Reviewed 100.0
PRK12754663 transketolase; Reviewed 100.0
TIGR00232653 tktlase_bact transketolase, bacterial and yeast. T 100.0
PTZ00089661 transketolase; Provisional 100.0
PRK05899624 transketolase; Reviewed 100.0
cd07036167 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding 100.0
PLN02790654 transketolase 100.0
KOG0523632 consensus Transketolase [Carbohydrate transport an 100.0
PF02779178 Transket_pyr: Transketolase, pyrimidine binding do 100.0
cd07033156 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domai 100.0
PRK09405 891 aceE pyruvate dehydrogenase subunit E1; Reviewed 100.0
TIGR03186 889 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. S 100.0
PRK13012 896 2-oxoacid dehydrogenase subunit E1; Provisional 100.0
COG0021663 TktA Transketolase [Carbohydrate transport and met 100.0
TIGR00239929 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 compon 100.0
PRK09404924 sucA 2-oxoglutarate dehydrogenase E1 component; Re 100.0
smart00861168 Transket_pyr Transketolase, pyrimidine binding dom 100.0
PRK05261 785 putative phosphoketolase; Provisional 99.89
TIGR00759 885 aceE pyruvate dehydrogenase E1 component, homodime 99.42
cd06586154 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of 99.4
KOG0451913 consensus Predicted 2-oxoglutarate dehydrogenase, 99.4
PRK07119352 2-ketoisovalerate ferredoxin reductase; Validated 99.32
PRK122701228 kgd alpha-ketoglutarate decarboxylase; Reviewed 99.17
PRK08659376 2-oxoglutarate ferredoxin oxidoreductase subunit a 99.11
COG2609 887 AceE Pyruvate dehydrogenase complex, dehydrogenase 99.02
PF02780124 Transketolase_C: Transketolase, C-terminal domain; 98.98
KOG04501017 consensus 2-oxoglutarate dehydrogenase, E1 subunit 98.96
TIGR03336 595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 98.92
PRK09627375 oorA 2-oxoglutarate-acceptor oxidoreductase subuni 98.88
COG3957 793 Phosphoketolase [Carbohydrate transport and metabo 98.88
COG0567906 SucA 2-oxoglutarate dehydrogenase complex, dehydro 98.78
PRK09622 407 porA pyruvate flavodoxin oxidoreductase subunit al 98.76
TIGR03710562 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha s 98.75
PRK08366390 vorA 2-ketoisovalerate ferredoxin oxidoreductase s 98.61
PRK08367394 porA pyruvate ferredoxin oxidoreductase subunit al 98.43
TIGR02176 1165 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxid 98.02
COG0674365 PorA Pyruvate:ferredoxin oxidoreductase and relate 97.75
PF03894179 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate 97.73
PF01855230 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreducta 97.68
COG4231 640 Indolepyruvate ferredoxin oxidoreductase, alpha an 97.07
cd07035155 TPP_PYR_POX_like Pyrimidine (PYR) binding domain o 97.02
cd07034160 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) bindi 97.01
PF02776172 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-ter 96.98
TIGR03297 361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 96.81
PRK08199 557 thiamine pyrophosphate protein; Validated 96.24
PRK13030 1159 2-oxoacid ferredoxin oxidoreductase; Provisional 96.04
TIGR02418 539 acolac_catab acetolactate synthase, catabolic. Ace 95.88
PRK08155 564 acetolactate synthase catalytic subunit; Validated 95.7
PRK08322 547 acetolactate synthase; Reviewed 95.67
PRK07092 530 benzoylformate decarboxylase; Reviewed 95.67
TIGR03845157 sulfopyru_alph sulfopyruvate decarboxylase, alpha 95.62
TIGR00118 558 acolac_lg acetolactate synthase, large subunit, bi 95.55
cd07039164 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX 95.5
PRK07979 574 acetolactate synthase 3 catalytic subunit; Validat 95.37
PRK05858 542 hypothetical protein; Provisional 95.33
PRK06457 549 pyruvate dehydrogenase; Provisional 95.29
PRK07710 571 acetolactate synthase catalytic subunit; Reviewed 95.26
PRK07418 616 acetolactate synthase 3 catalytic subunit; Reviewe 95.26
PRK06048 561 acetolactate synthase 3 catalytic subunit; Reviewe 95.24
PRK07525 588 sulfoacetaldehyde acetyltransferase; Validated 95.19
PRK06466 574 acetolactate synthase 3 catalytic subunit; Validat 95.0
PRK07524 535 hypothetical protein; Provisional 94.94
PRK07282 566 acetolactate synthase catalytic subunit; Reviewed 94.89
PRK06456 572 acetolactate synthase catalytic subunit; Reviewed 94.8
PRK09124 574 pyruvate dehydrogenase; Provisional 94.68
PRK08266 542 hypothetical protein; Provisional 94.59
PRK06965 587 acetolactate synthase 3 catalytic subunit; Validat 94.46
cd02014178 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruv 94.4
cd02010177 TPP_ALS Thiamine pyrophosphate (TPP) family, Aceto 94.39
cd07037162 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2- 94.37
cd02001157 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) famil 94.32
cd02009175 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) fa 94.27
PRK08617 552 acetolactate synthase; Reviewed 94.26
TIGR03457 579 sulphoacet_xsc sulfoacetaldehyde acetyltransferase 94.23
PRK07789 612 acetolactate synthase 1 catalytic subunit; Validat 94.16
PRK07586 514 hypothetical protein; Validated 94.12
PRK07064 544 hypothetical protein; Provisional 94.08
PRK11866279 2-oxoacid ferredoxin oxidoreductase subunit beta; 94.01
PRK06112 578 acetolactate synthase catalytic subunit; Validated 93.93
PRK11865299 pyruvate ferredoxin oxidoreductase subunit beta; P 93.88
PRK06882 574 acetolactate synthase 3 catalytic subunit; Validat 93.84
PRK09193 1165 indolepyruvate ferredoxin oxidoreductase; Validate 93.82
PRK08979 572 acetolactate synthase 3 catalytic subunit; Validat 93.81
PRK08978 548 acetolactate synthase 2 catalytic subunit; Reviewe 93.77
PLN02573 578 pyruvate decarboxylase 93.68
TIGR01504 588 glyox_carbo_lig glyoxylate carboligase. Glyoxylate 93.6
PRK11864300 2-ketoisovalerate ferredoxin oxidoreductase subuni 93.41
cd02004172 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) fam 93.27
PRK11269 591 glyoxylate carboligase; Provisional 93.24
PRK06725 570 acetolactate synthase 3 catalytic subunit; Validat 93.19
TIGR02720 575 pyruv_oxi_spxB pyruvate oxidase. Members of this f 93.15
PRK09107 595 acetolactate synthase 3 catalytic subunit; Validat 93.02
PLN02470 585 acetolactate synthase 93.01
PRK13029 1186 2-oxoacid ferredoxin oxidoreductase; Provisional 92.99
cd03376235 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP fam 92.71
TIGR02177287 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta 92.47
cd02003205 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD 92.46
PRK12474 518 hypothetical protein; Provisional 92.39
cd07038162 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding dom 92.32
COG0028 550 IlvB Thiamine pyrophosphate-requiring enzymes [ace 92.17
cd02018237 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyru 91.94
PRK09259 569 putative oxalyl-CoA decarboxylase; Validated 91.93
cd02015186 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acet 91.81
TIGR03254 554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 91.81
PRK08155564 acetolactate synthase catalytic subunit; Validated 91.73
PRK07449 568 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1 91.69
PRK08527 563 acetolactate synthase 3 catalytic subunit; Validat 91.65
CHL00099 585 ilvB acetohydroxyacid synthase large subunit 91.63
PRK08327 569 acetolactate synthase catalytic subunit; Validated 91.52
PRK08611 576 pyruvate oxidase; Provisional 91.5
cd03375193 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-o 91.47
TIGR03846181 sulfopy_beta sulfopyruvate decarboxylase, beta sub 91.41
PRK06276 586 acetolactate synthase catalytic subunit; Reviewed 91.38
PF02775153 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-ter 90.97
PRK06154 565 hypothetical protein; Provisional 90.97
PRK06546 578 pyruvate dehydrogenase; Provisional 90.87
cd02013196 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, 90.54
cd03371188 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, Pp 90.5
COG4032172 Predicted thiamine-pyrophosphate-binding protein [ 90.3
TIGR03394 535 indol_phenyl_DC indolepyruvate/phenylpyruvate deca 89.99
PRK08266542 hypothetical protein; Provisional 89.89
cd00568168 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme fa 89.81
PRK06457549 pyruvate dehydrogenase; Provisional 88.84
PRK07092530 benzoylformate decarboxylase; Reviewed 88.46
TIGR03297361 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. Thi 88.25
PRK09628277 oorB 2-oxoglutarate-acceptor oxidoreductase subuni 88.25
cd02002178 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC 87.98
cd02008178 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, 87.67
cd02006202 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl s 87.28
TIGR03393 539 indolpyr_decarb indolepyruvate decarboxylase, Erwi 87.09
PRK11867286 2-oxoglutarate ferredoxin oxidoreductase subunit b 86.56
TIGR00173 432 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohex 86.48
PF09363 203 XFP_C: XFP C-terminal domain; InterPro: IPR018969 85.64
PRK08273 597 thiamine pyrophosphate protein; Provisional 85.54
cd03372179 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE 84.81
PRK08617552 acetolactate synthase; Reviewed 84.73
PRK11869280 2-oxoacid ferredoxin oxidoreductase subunit beta; 84.68
PLN02980 1655 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesi 84.33
cd02012255 TPP_TK Thiamine pyrophosphate (TPP) family, Transk 84.26
PRK08322547 acetolactate synthase; Reviewed 84.08
PRK06048561 acetolactate synthase 3 catalytic subunit; Reviewe 83.37
TIGR00118558 acolac_lg acetolactate synthase, large subunit, bi 83.28
TIGR03254554 oxalate_oxc oxalyl-CoA decarboxylase. In a number 83.26
PRK08273597 thiamine pyrophosphate protein; Provisional 82.71
PRK06276586 acetolactate synthase catalytic subunit; Reviewed 82.26
PRK06546578 pyruvate dehydrogenase; Provisional 82.05
PRK06163202 hypothetical protein; Provisional 81.5
TIGR02418539 acolac_catab acetolactate synthase, catabolic. Ace 81.33
PRK08978548 acetolactate synthase 2 catalytic subunit; Reviewe 80.89
cd02007195 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS s 80.89
PF10740172 DUF2529: Protein of unknown function (DUF2529); In 80.41
TIGR03336595 IOR_alpha indolepyruvate ferredoxin oxidoreductase 80.38
>COG0022 AcoB Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit [Energy production and conversion] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-62  Score=441.32  Aligned_cols=235  Identities=52%  Similarity=0.869  Sum_probs=228.5

Q ss_pred             cchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945           39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ  117 (275)
Q Consensus        39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~  117 (275)
                      ++++++|++++|.+.+++|++|+++|+|++ +||+|++|++|.++||++|++|+||+|.+++|+|.|+|+.|+||++++|
T Consensus         1 ~~~~~eAi~~Am~~eM~rD~~V~v~GEDVg~~GGvf~~T~GL~~kfG~~RV~DTPiaE~gi~G~avGaA~~GlrPivEiq   80 (324)
T COG0022           1 QMTMIEAINEAMDEEMERDERVVVLGEDVGVYGGVFRVTKGLQEKFGEERVIDTPIAESGIAGIAVGAALTGLRPIVEIQ   80 (324)
T ss_pred             CccHHHHHHHHHHHHHhcCCCEEEEcccccccCChhhhchhHHHHhCccceecCccchhhhHHHHHHHHHcCCcceEEEE
Confidence            367999999999999999999999999999 8999999999999999999999999999999999999999999999999


Q ss_pred             ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945          118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC  197 (275)
Q Consensus       118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a  197 (275)
                      |.+|++.++|||.|++++.+||++|+++| |+|++.+.|..-.++.|||++.++++.++||++|++|++|.|+++||++|
T Consensus        81 f~dF~~~a~dqi~n~aAk~ryrsgG~~~~-PiviR~p~G~g~~~~~~HSqs~ea~f~h~PGlKVV~PStpyDAKGLL~aA  159 (324)
T COG0022          81 FADFIYPAFDQIVNQAAKIRYRSGGQFTV-PIVIRTPNGGGIGGGAQHSQSLEALFAHIPGLKVVMPSTPYDAKGLLKAA  159 (324)
T ss_pred             ecchhHHHHHHHHHHHHHHhhhcCCceeC-CEEEEcCCCCCCCchhhccCCHHHHHhcCCCceEEecCChHHHHHHHHHH
Confidence            99999999999999999999999999999 99999998887778899999999999999999999999999999999999


Q ss_pred             hcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945          198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF  274 (275)
Q Consensus       198 ~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~  274 (275)
                      +++++||+++|||++||....++|+++|.+|+||+.+.|+|+|+|||+||.|++.+++||++|+++||++||||+|.
T Consensus       160 Ird~dPViflE~k~lY~~~~~eVP~~~Y~iPlGkA~i~reG~DvTivtyg~mv~~al~AAe~l~~~Gis~EVIDLRT  236 (324)
T COG0022         160 IRDPDPVIFLEHKRLYRSFKGEVPEEDYTIPLGKAKIVREGSDVTIVTYGAMVHTALEAAEELEKEGISAEVIDLRT  236 (324)
T ss_pred             hcCCCCEEEEecHHHhcccccCCCCCCccccccceeeEecCCceEEEEechHHHHHHHHHHHHhhcCCCeEEEeccc
Confidence            99999999999999999766789999999999999999999999999999999999999999999999999999986

>CHL00144 odpB pyruvate dehydrogenase E1 component beta subunit; Validated Back     alignment and domain information
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional Back     alignment and domain information
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK09212 pyruvate dehydrogenase subunit beta; Validated Back     alignment and domain information
>PLN02683 pyruvate dehydrogenase E1 component subunit beta Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>KOG0524 consensus Pyruvate dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism] Back     alignment and domain information
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>KOG0525 consensus Branched chain alpha-keto acid dehydrogenase E1, beta subunit [Energy production and conversion] Back     alignment and domain information
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase Back     alignment and domain information
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional Back     alignment and domain information
>PRK12753 transketolase; Reviewed Back     alignment and domain information
>PRK12754 transketolase; Reviewed Back     alignment and domain information
>TIGR00232 tktlase_bact transketolase, bacterial and yeast Back     alignment and domain information
>PTZ00089 transketolase; Provisional Back     alignment and domain information
>PRK05899 transketolase; Reviewed Back     alignment and domain information
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins Back     alignment and domain information
>PLN02790 transketolase Back     alignment and domain information
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2 Back     alignment and domain information
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins Back     alignment and domain information
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed Back     alignment and domain information
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase Back     alignment and domain information
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional Back     alignment and domain information
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component Back     alignment and domain information
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed Back     alignment and domain information
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain Back     alignment and domain information
>PRK05261 putative phosphoketolase; Provisional Back     alignment and domain information
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type Back     alignment and domain information
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes Back     alignment and domain information
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated Back     alignment and domain information
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion] Back     alignment and domain information
>PF02780 Transketolase_C: Transketolase, C-terminal domain; InterPro: IPR005476 Transketolase 2 Back     alignment and domain information
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism] Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information
>PRK09627 oorA 2-oxoglutarate-acceptor oxidoreductase subunit OorA; Reviewed Back     alignment and domain information
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PRK09622 porA pyruvate flavodoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>TIGR03710 OAFO_sf 2-oxoacid:acceptor oxidoreductase, alpha subunit Back     alignment and domain information
>PRK08366 vorA 2-ketoisovalerate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>PRK08367 porA pyruvate ferredoxin oxidoreductase subunit alpha; Reviewed Back     alignment and domain information
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric Back     alignment and domain information
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion] Back     alignment and domain information
>PF03894 XFP: D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase; InterPro: IPR005593 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>PF01855 POR_N: Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg; InterPro: IPR002880 This family includes the N-terminal region of the pyruvate ferredoxin oxidoreductase, corresponding to the first two structural domains Back     alignment and domain information
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion] Back     alignment and domain information
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins Back     alignment and domain information
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins Back     alignment and domain information
>PF02776 TPP_enzyme_N: Thiamine pyrophosphate enzyme, N-terminal TPP binding domain; InterPro: IPR012001 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK08199 thiamine pyrophosphate protein; Validated Back     alignment and domain information
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX Back     alignment and domain information
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK05858 hypothetical protein; Provisional Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07710 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated Back     alignment and domain information
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK07524 hypothetical protein; Provisional Back     alignment and domain information
>PRK07282 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06456 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK09124 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions Back     alignment and domain information
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation Back     alignment and domain information
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins Back     alignment and domain information
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase) Back     alignment and domain information
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD) Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase Back     alignment and domain information
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated Back     alignment and domain information
>PRK07586 hypothetical protein; Validated Back     alignment and domain information
>PRK07064 hypothetical protein; Provisional Back     alignment and domain information
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK06112 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated Back     alignment and domain information
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>PLN02573 pyruvate decarboxylase Back     alignment and domain information
>TIGR01504 glyox_carbo_lig glyoxylate carboligase Back     alignment and domain information
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL) Back     alignment and domain information
>PRK11269 glyoxylate carboligase; Provisional Back     alignment and domain information
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase Back     alignment and domain information
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>PLN02470 acetolactate synthase Back     alignment and domain information
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional Back     alignment and domain information
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria Back     alignment and domain information
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family Back     alignment and domain information
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv Back     alignment and domain information
>PRK12474 hypothetical protein; Provisional Back     alignment and domain information
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins Back     alignment and domain information
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways Back     alignment and domain information
>PRK09259 putative oxalyl-CoA decarboxylase; Validated Back     alignment and domain information
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK08155 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated Back     alignment and domain information
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated Back     alignment and domain information
>CHL00099 ilvB acetohydroxyacid synthase large subunit Back     alignment and domain information
>PRK08327 acetolactate synthase catalytic subunit; Validated Back     alignment and domain information
>PRK08611 pyruvate oxidase; Provisional Back     alignment and domain information
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor Back     alignment and domain information
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor Back     alignment and domain information
>PRK06154 hypothetical protein; Provisional Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc) Back     alignment and domain information
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins Back     alignment and domain information
>COG4032 Predicted thiamine-pyrophosphate-binding protein [General function prediction only] Back     alignment and domain information
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family Back     alignment and domain information
>PRK08266 hypothetical protein; Provisional Back     alignment and domain information
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor Back     alignment and domain information
>PRK06457 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK07092 benzoylformate decarboxylase; Reviewed Back     alignment and domain information
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase Back     alignment and domain information
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed Back     alignment and domain information
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC) Back     alignment and domain information
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit Back     alignment and domain information
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl) Back     alignment and domain information
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family Back     alignment and domain information
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed Back     alignment and domain information
>TIGR00173 menD 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase Back     alignment and domain information
>PF09363 XFP_C: XFP C-terminal domain; InterPro: IPR018969 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE) Back     alignment and domain information
>PRK08617 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional Back     alignment and domain information
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding Back     alignment and domain information
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates Back     alignment and domain information
>PRK08322 acetolactate synthase; Reviewed Back     alignment and domain information
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed Back     alignment and domain information
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type Back     alignment and domain information
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase Back     alignment and domain information
>PRK08273 thiamine pyrophosphate protein; Provisional Back     alignment and domain information
>PRK06276 acetolactate synthase catalytic subunit; Reviewed Back     alignment and domain information
>PRK06546 pyruvate dehydrogenase; Provisional Back     alignment and domain information
>PRK06163 hypothetical protein; Provisional Back     alignment and domain information
>TIGR02418 acolac_catab acetolactate synthase, catabolic Back     alignment and domain information
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed Back     alignment and domain information
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis Back     alignment and domain information
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales Back     alignment and domain information
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
1dtw_B342 Human Branched-Chain Alpha-Keto Acid Dehydrogenase 5e-83
2j9f_B350 Human Branched-Chain Alpha-Ketoacid Dehydrogenase- 5e-83
1olx_B342 Roles Of His291-alpha And His146-beta' In The Reduc 6e-82
1ik6_A369 3d Structure Of The E1beta Subunit Of Pyruvate Dehy 3e-53
1um9_B324 Branched-chain 2-oxo Acid Dehydrogenase (e1) From T 3e-51
1w85_B324 The Crystal Structure Of Pyruvate Dehydrogenase E1 1e-45
3duf_B325 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 1e-45
2bp7_B339 New Crystal Form Of The Pseudomonas Putida Branched 9e-44
1qs0_B338 Crystal Structure Of Pseudomonas Putida 2-Oxoisoval 1e-42
2ozl_B341 Human Pyruvate Dehydrogenase S264e Variant Length = 2e-29
3exe_B329 Crystal Structure Of The Pyruvate Dehydrogenase (E1 2e-29
1ni4_B341 Human Pyruvate Dehydrogenase Length = 341 4e-23
2o1x_A629 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From 3e-05
>pdb|1DTW|B Chain B, Human Branched-Chain Alpha-Keto Acid Dehydrogenase Length = 342 Back     alignment and structure 
Iteration: 1

 Score =  303 bits (777), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 146/230 (63%), Positives = 173/230 (75%), Gaps = 1/230 (0%)
Query: 35  GSGKSLNLYSAINQALHIALETDPRAYXXXXXXXXXXXXRCTTGLADRFGKSRVFNTPLC 94
           G  + +NL+ ++  AL  +L  DP A             RCT GL D++GK RVFNTPLC
Sbjct: 16  GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75
Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           EQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76  EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135
Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
           +G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195
Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIM-EQACLDAEKV 263
            + EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ E A +  EK+
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKEKL 245
>pdb|2J9F|B Chain B, Human Branched-Chain Alpha-Ketoacid Dehydrogenase- Decarboxylase E1b Length = 350 Back     alignment and structure
>pdb|1OLX|B Chain B, Roles Of His291-alpha And His146-beta' In The Reductive Acylation Reaction Catalyzed By Human Branched-chain Alpha-ketoacid Dehydrogenase Length = 342 Back     alignment and structure
>pdb|1IK6|A Chain A, 3d Structure Of The E1beta Subunit Of Pyruvate Dehydrogenase From The Archeon Pyrobaculum Aerophilum Length = 369 Back     alignment and structure
>pdb|1UM9|B Chain B, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus Thermophilus Hb8 In Apo-form Length = 324 Back     alignment and structure
>pdb|1W85|B Chain B, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound To The Peripheral Subunit Binding Domain Of E2 Length = 324 Back     alignment and structure
>pdb|3DUF|B Chain B, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 325 Back     alignment and structure
>pdb|2BP7|B Chain B, New Crystal Form Of The Pseudomonas Putida Branched-Chain Dehydrogenase (E1) Length = 339 Back     alignment and structure
>pdb|1QS0|B Chain B, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate Dehydrogenase (Branched-Chain Alpha-Keto Acid Dehydrogenase, E1b) Length = 338 Back     alignment and structure
>pdb|2OZL|B Chain B, Human Pyruvate Dehydrogenase S264e Variant Length = 341 Back     alignment and structure
>pdb|3EXE|B Chain B, Crystal Structure Of The Pyruvate Dehydrogenase (E1p) Component Of Human Pyruvate Dehydrogenase Complex Length = 329 Back     alignment and structure
>pdb|1NI4|B Chain B, Human Pyruvate Dehydrogenase Length = 341 Back     alignment and structure
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From Deinococcus Radiodurans Length = 629 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query275
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 1e-149
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 1e-144
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 1e-143
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 1e-140
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 1e-139
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 1e-102
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 2e-07
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 4e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Length = 342 Back     alignment and structure
 Score =  420 bits (1083), Expect = e-149
 Identities = 153/228 (67%), Positives = 182/228 (79%)

Query: 35  GSGKSLNLYSAINQALHIALETDPRAYVFGEDVGFGGVFRCTTGLADRFGKSRVFNTPLC 94
           G  + +NL+ ++  AL  +L  DP A +FGEDV FGGVFRCT GL D++GK RVFNTPLC
Sbjct: 16  GQTQKMNLFQSVTSALDNSLAKDPTAVIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLC 75

Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           EQGIVGF IG+A  G  AIAEIQFADYIFPAFDQIVNEAAK+RYRSG+ FNCG LT+R+P
Sbjct: 76  EQGIVGFGIGIAVTGATAIAEIQFADYIFPAFDQIVNEAAKYRYRSGDLFNCGSLTIRSP 135

Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
           +G VGHG  YHSQSPEAFF H PG+KVVIPRSP QAKGLLLSCI D NP +FFEPK LYR
Sbjct: 136 WGCVGHGALYHSQSPEAFFAHCPGIKVVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYR 195

Query: 215 LSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEK 262
            + EEVP + Y +PLS+AEVI+EGSD+TLV WG Q+ ++ +    A++
Sbjct: 196 AAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQVHVIREVASMAKE 243
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Length = 324 Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Length = 369 Back     alignment and structure
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Length = 324 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Length = 338 Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Length = 341 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Length = 629 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Length = 621 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
1w85_B324 Pyruvate dehydrogenase E1 component, beta subunit; 100.0
1umd_B324 E1-beta, 2-OXO acid dehydrogenase beta subunit; al 100.0
2bfd_B342 2-oxoisovalerate dehydrogenase beta subunit; oxido 100.0
1ik6_A369 Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, o 100.0
1qs0_B338 2-oxoisovalerate dehydrogenase beta-subunit; heter 100.0
2ozl_B341 PDHE1-B, pyruvate dehydrogenase E1 component subun 100.0
3m49_A690 Transketolase; alpha-beta-alpha sandwich, csgid, t 100.0
3kom_A663 Transketolase; rossmann fold, csgid, transferase, 100.0
3rim_A700 Transketolase, TK; TPP, transferase; HET: TPP; 2.4 100.0
3uk1_A711 Transketolase; structural genomics, seattle struct 100.0
3l84_A632 Transketolase; TKT, structural genomics, center fo 100.0
3mos_A616 Transketolase, TK; thiamin diphosphate TPP THDP en 100.0
1gpu_A680 Transketolase; transferase(ketone residues); HET: 100.0
2r8o_A669 Transketolase 1, TK 1; reaction intermediate, calc 100.0
1itz_A675 Transketolase; calvin cycle, cofactor, thiamine py 100.0
2o1x_A629 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, 100.0
1r9j_A673 Transketolase; domains, EACH of the alpha/beta typ 100.0
2o1s_A621 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thia 100.0
2e6k_A651 Transketolase; structural genomics, NPPSFA, nation 100.0
2jgd_A933 2-oxoglutarate dehydrogenase E1 component; flavopr 100.0
2yic_A868 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.9 100.0
2xt6_A1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
2qtc_A 886 Pyruvate dehydrogenase E1 component; thiamin dipho 100.0
3ahc_A 845 Phosphoketolase, xylulose 5-phosphate/fructose 6-p 100.0
1yd7_A395 2-keto acid:ferredoxin oxidoreductase subunit alph 99.75
2c42_A 1231 Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, 99.41
3ju3_A118 Probable 2-oxoacid ferredoxin oxidoreductase, ALP; 98.18
1v5e_A 590 Pyruvate oxidase; oxidoreductase, flavoprotein; HE 95.82
3eya_A 549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 95.11
1ybh_A 590 Acetolactate synthase, chloroplast; acetohydroxyac 94.39
2wvg_A 568 PDC, pyruvate decarboxylase; thiamine diphosphate, 93.59
2vbi_A 566 Pyruvate decarboxylase; thiamine pyrophosphate, ly 93.58
1ozh_A 566 ALS, acetolactate synthase, catabolic; acetohydrox 93.39
4feg_A 603 Pyruvate oxidase; carbanion, structure activity re 92.43
2uz1_A 563 Benzaldehyde lyase; thiamine diphosphate, thiamine 92.42
1t9b_A677 Acetolactate synthase, mitochondrial; acetohydroxy 92.35
2iht_A 573 Carboxyethylarginine synthase; thiamin diphosphate 92.25
2nxw_A 565 Phenyl-3-pyruvate decarboxylase; thiamine pyrophos 92.18
2pgn_A 589 Cyclohexane-1,2-dione hydrolase (CDH); three alpha 91.93
1t9b_A 677 Acetolactate synthase, mitochondrial; acetohydroxy 91.59
1q6z_A 528 BFD, BFDC, benzoylformate decarboxylase; lyase, ca 90.95
3lq1_A 578 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 90.33
3hww_A 556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 90.26
2c31_A 568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 90.18
2q28_A 564 Oxalyl-COA decarboxylase; lyase, oxalate degradati 89.64
2pan_A 616 Glyoxylate carboligase; thiamin-diphosphate (THDP) 89.63
2vk8_A 563 Pyruvate decarboxylase isozyme 1; asymmetric activ 89.39
2x7j_A 604 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene - 89.38
2vbf_A 570 Branched-chain alpha-ketoacid decarboxylase; KDCA, 85.1
3eya_A549 Pyruvate dehydrogenase [cytochrome]; pyruvate oxid 81.79
1ybh_A590 Acetolactate synthase, chloroplast; acetohydroxyac 81.76
2c31_A568 Oxalyl-COA decarboxylase; oxalate, thiamin diphosp 80.23
3hww_A556 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 80.12
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B* Back     alignment and structure
Probab=100.00  E-value=1.8e-55  Score=407.11  Aligned_cols=235  Identities=45%  Similarity=0.775  Sum_probs=220.0

Q ss_pred             cchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEEec
Q 023945           39 SLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAEIQ  117 (275)
Q Consensus        39 ~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~~~  117 (275)
                      +++|+++++++|.+++++|++++++++|++ ++|+++.+++|+++|||+||+|+||+|++|+++|+|+|++|++||++++
T Consensus         2 ~~~~~~a~~~~L~~l~~~~~~vv~~~~d~~~~~g~~~~~~~~~~~~gp~r~~~~gIaE~~~v~~a~G~A~~G~rp~~~~t   81 (324)
T 1w85_B            2 QMTMVQAITDALRIELKNDPNVLIFGEDVGVNGGVFRATEGLQAEFGEDRVFDTPLAESGIGGLAIGLALQGFRPVPEIQ   81 (324)
T ss_dssp             EECHHHHHHHHHHHHHHHCTTEEEEETTCSTTCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHTTCEEEEBCS
T ss_pred             cchHHHHHHHHHHHHHhHCcCEEEEcCcccccCCcchhHHHHHHHhCCCcEEEcchhHHHHHHHHHHHHhCCCEEEEEec
Confidence            367999999999999999999999999998 5666777899999999999999999999999999999999999999867


Q ss_pred             ccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHHHh
Q 023945          118 FADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSC  197 (275)
Q Consensus       118 f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~~a  197 (275)
                      |++|++|++|||++++|+++|+++|+.++ |+|++++.|..+.+|+||+++|++++|++|||+|++|+|+.|++.+++++
T Consensus        82 ~~~F~~~a~dqi~~~~a~~~~~~~g~~~~-pvv~~~~~g~~~~~g~~hs~~~~a~~~~iP~l~V~~Psd~~e~~~~l~~a  160 (324)
T 1w85_B           82 FFGFVYEVMDSICGQMARIRYRTGGRYHM-PITIRSPFGGGVHTPELHSDSLEGLVAQQPGLKVVIPSTPYDAKGLLISA  160 (324)
T ss_dssp             SGGGGGGTHHHHHTTGGGHHHHTTTSSCC-CCEEEEEECSSSCCCTTSSCCCHHHHTTSTTCEEECCSSHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHhhhccCCCcC-CEEEEEeccCCCCCCCcccccHHHHHccCCCCEEEeeCCHHHHHHHHHHH
Confidence            99999999999999999999999998899 99988766666778899998999999999999999999999999999999


Q ss_pred             hcCCCcEEEecccccccccccccCCCCCcccCCceEEeeeCCcEEEEEecHhHHHHHHHHHHHHhcCCCeEEEeccc
Q 023945          198 IRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSEAEVIREGSDITLVGWGAQLSIMEQACLDAEKVCDSFSLLENVF  274 (275)
Q Consensus       198 ~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk~~v~~~G~dvtIia~G~~v~~al~Aa~~L~~~Gi~~~VId~~~  274 (275)
                      +++++|++|++||+++|...+.++++++.+++||++++++|.|++|||+|++++.|++|+++|+++||+++|||++|
T Consensus       161 ~~~~~Pv~i~~p~~l~r~~~~~~~~~~~~~~~Gk~~~~~~g~dv~iva~G~~~~~a~~Aa~~L~~~Gi~v~vi~~~~  237 (324)
T 1w85_B          161 IRDNDPVIFLEHLKLYRSFRQEVPEGEYTIPIGKADIKREGKDITIIAYGAMVHESLKAAAELEKEGISAEVVDLRT  237 (324)
T ss_dssp             HHSSSCEEEEEETTTSSSCCEECCSSCCCCCTTCCEEEECCSSEEEEECTTHHHHHHHHHHHHHHTTCCEEEEECSE
T ss_pred             HHcCCCEEEEechHhcCCCCCCCCCccccccCCceEEEecCCCEEEEEecHHHHHHHHHHHHHHhcCCCEEEEEeee
Confidence            99999999999999998766667766778899999999999999999999999999999999999999999999987
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B* Back     alignment and structure
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ... Back     alignment and structure
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2 Back     alignment and structure
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B Back     alignment and structure
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B Back     alignment and structure
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A* Back     alignment and structure
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp} Back     alignment and structure
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis} Back     alignment and structure
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A* Back     alignment and structure
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A* Back     alignment and structure
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A* Back     alignment and structure
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A* Back     alignment and structure
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A* Back     alignment and structure
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans} Back     alignment and structure
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 Back     alignment and structure
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli} Back     alignment and structure
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus} Back     alignment and structure
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B* Back     alignment and structure
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A* Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A* Back     alignment and structure
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A* Back     alignment and structure
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus} Back     alignment and structure
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A* Back     alignment and structure
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum} Back     alignment and structure
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A* Back     alignment and structure
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus} Back     alignment and structure
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A* Back     alignment and structure
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A* Back     alignment and structure
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A* Back     alignment and structure
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A* Back     alignment and structure
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A* Back     alignment and structure
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A* Back     alignment and structure
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X* Back     alignment and structure
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes} Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A* Back     alignment and structure
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli} Back     alignment and structure
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A* Back     alignment and structure
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis} Back     alignment and structure
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A* Back     alignment and structure
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A* Back     alignment and structure
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A* Back     alignment and structure
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A* Back     alignment and structure
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 275
d1qs0b1204 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase 1e-66
d2bfdb1203 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid 2e-65
d1w85b1192 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, 9e-63
d1ik6a1191 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate deh 9e-62
d2ozlb1192 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate deh 2e-60
d1umdb1186 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid 1e-51
d1umdb2137 c.48.1.2 (B:188-324) Branched-chain alpha-keto aci 8e-08
d2ozlb2138 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate d 1e-07
d2bfdb2138 c.48.1.2 (B:205-342) Branched-chain alpha-keto aci 2e-07
d1ik6a2135 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate d 1e-06
d1qs0b2134 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenas 2e-06
d1w85b2132 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-bet 2e-06
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Length = 204 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

 Score =  204 bits (520), Expect = 1e-66
 Identities = 94/206 (45%), Positives = 127/206 (61%), Gaps = 5/206 (2%)

Query: 36  SGKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLC 94
           +  ++ +  A+  A+ + LE D    V+G+DVG FGGVFRCT GL  ++GKSRVF+ P+ 
Sbjct: 1   ATTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPIS 60

Query: 95  EQGIVGFAIGLAAMGNRAIAEIQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAP 154
           E GIVG A+G+ A G R + EIQFADY +PA DQIV+E A+ RYRS  +F     T+R P
Sbjct: 61  ESGIVGTAVGMGAYGLRPVVEIQFADYFYPASDQIVSEMARLRYRSAGEFIAPL-TLRMP 119

Query: 155 YGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLLSCIRDPNPVVFFEPKWLYR 214
            G   +GG  HSQSPEA F  V GL+ V+P +P  AKGLL++ I   +PV+F EPK LY 
Sbjct: 120 CGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLIASIECDDPVIFLEPKRLYN 179

Query: 215 LSVEEVPEDDYMLPL--SEAEVIREG 238
               +   D  + P        + +G
Sbjct: 180 GPF-DGHHDRPVTPWSKHPHSAVPDG 204
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 203 Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 192 Back     information, alignment and structure
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 191 Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Length = 192 Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Length = 186 Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Length = 137 Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 138 Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 135 Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Length = 134 Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Length = 132 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query275
d1qs0b1204 2-oxoisovalerate dehydrogenase (E1B), Pyr module { 100.0
d1ik6a1191 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d2bfdb1203 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1umdb1186 Branched-chain alpha-keto acid dehydrogenase, Pyr 100.0
d1w85b1192 Pyruvate dehydrogenase E1-beta, PdhB, N-terminal d 100.0
d2ozlb1192 E1-beta subunit of pyruvate dehydrogenase, Pyr mod 100.0
d1itza2192 Transketolase (TK), Pyr module {Maize (Zea mays) [ 100.0
d1gpua2197 Transketolase (TK), Pyr module {Baker's yeast (Sac 100.0
d1r9ja1190 Transketolase (TK), Pyr module {Leishmania mexican 100.0
d2r8oa1195 Transketolase (TK), Pyr module {Escherichia coli [ 100.0
d1umdb2137 Branched-chain alpha-keto acid dehydrogenase {Ther 99.43
d2bfdb2138 Branched-chain alpha-keto acid dehydrogenase {Huma 99.32
d2ozlb2138 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.27
d1w85b2132 Pyruvate dehydrogenase E1-beta, PdhB, C-terminal d 99.19
d1ik6a2135 E1-beta subunit of pyruvate dehydrogenase, C-domai 99.1
d1qs0b2134 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseu 99.05
d2ieaa1230 Pyruvate dehydrogenase E1 component, Pyr module {E 98.92
d1gpua3146 Transketolase (TK), C-domain {Baker's yeast (Sacch 98.83
d2r8oa3136 Transketolase (TK), C-domain {Escherichia coli [Ta 98.78
d1itza3136 Transketolase (TK), C-domain {Maize (Zea mays) [Ta 98.68
d1r9ja3143 Transketolase (TK), C-domain {Leishmania mexicana 98.45
d2c42a1257 Pyruvate-ferredoxin oxidoreductase, PFOR, domain I 97.45
d2ieaa3 186 Pyruvate dehydrogenase E1 component, C-domain {Esc 97.18
d2djia2184 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 96.96
d2ji7a3183 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 96.49
d1q6za2180 Benzoylformate decarboxylase {Pseudomonas putida [ 96.44
d2ez9a2174 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 96.22
d1t9ba2175 Acetohydroxyacid synthase catalytic subunit {Baker 95.94
d1pvda2180 Pyruvate decarboxylase {Baker's yeast (Saccharomyc 95.79
d2ihta2186 Carboxyethylarginine synthase {Streptomyces clavul 95.6
d1zpda2186 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 95.16
d1ovma2178 Indole-3-pyruvate decarboxylase {Enterobacter cloa 94.53
d1ozha2181 Catabolic acetolactate synthase {Klebsiella pneumo 94.15
d1ybha2195 Acetohydroxyacid synthase catalytic subunit {Thale 94.0
d1t9ba3227 Acetohydroxyacid synthase catalytic subunit {Baker 93.83
d1q6za3183 Benzoylformate decarboxylase {Pseudomonas putida [ 93.41
d2ji7a2188 Oxalyl-CoA decarboxylase {Oxalobacter formigenes [ 93.15
d2ihta3198 Carboxyethylarginine synthase {Streptomyces clavul 92.38
d1ybha3208 Acetohydroxyacid synthase catalytic subunit {Thale 92.15
d1ozha3192 Catabolic acetolactate synthase {Klebsiella pneumo 91.75
d2djia3229 Pyruvate oxidase {Aerococcus viridans [TaxId: 1377 86.7
d1ovma3196 Indole-3-pyruvate decarboxylase {Enterobacter cloa 86.43
d1zpda3204 Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 83.11
d2ez9a3228 Pyruvate oxidase {Lactobacillus plantarum [TaxId: 80.24
>d1qs0b1 c.36.1.7 (B:2-205) 2-oxoisovalerate dehydrogenase (E1B), Pyr module {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Thiamin diphosphate-binding fold (THDP-binding)
superfamily: Thiamin diphosphate-binding fold (THDP-binding)
family: Branched-chain alpha-keto acid dehydrogenase Pyr module
domain: 2-oxoisovalerate dehydrogenase (E1B), Pyr module
species: Pseudomonas putida [TaxId: 303]

Probab=100.00  E-value=4.6e-51  Score=352.11  Aligned_cols=200  Identities=48%  Similarity=0.843  Sum_probs=187.8

Q ss_pred             CccchHHHHHHHHHHHHHhcCCCEEEEccCCC-CCCccccccchhhhhCCCCeEecchhHHHHHHHHHHHHhcCCeeEEE
Q 023945           37 GKSLNLYSAINQALHIALETDPRAYVFGEDVG-FGGVFRCTTGLADRFGKSRVFNTPLCEQGIVGFAIGLAAMGNRAIAE  115 (275)
Q Consensus        37 ~~~~~~~~a~~~~L~~l~~~d~~iv~i~~Dl~-~gg~~~~~~~f~~~~gp~r~i~~GIaE~~~vg~A~GlA~~G~~piv~  115 (275)
                      ++.+++++|++++|.+++++|++++++++|++ .||+|+++++|.++|||||++|+||+|++++|+|+|+|++|++||++
T Consensus         2 ~~~m~~~~ai~~al~e~m~~d~~v~~~Gedv~~~Gg~f~~t~gl~~kfgp~Rv~dtpIaE~~~vG~A~GlA~~G~rPvve   81 (204)
T d1qs0b1           2 TTTMTMIQALRSAMDVMLERDDNVVVYGQDVGYFGGVFRCTEGLQTKYGKSRVFDAPISESGIVGTAVGMGAYGLRPVVE   81 (204)
T ss_dssp             EEECCHHHHHHHHHHHHHHHCTTEEEEETTCSSSCCTTSTTTTHHHHHCTTTEEECCSCHHHHHHHHHHHHHHTCEEEEE
T ss_pred             CceehHHHHHHHHHHHHHhhCCCEEEEecCCCccCCccccchHHHHHHhhhheecccccceeehhHHHHHhcCCCcEEEE
Confidence            46789999999999999999999999999998 68899999999999999999999999999999999999999999999


Q ss_pred             ecccchHHhHHHHHHHHHHhcccccCCCcccceEEEEeCccccCCCCCCCCchHHHHHcCCCCcEEEccCCHHHHHHHHH
Q 023945          116 IQFADYIFPAFDQIVNEAAKFRYRSGNQFNCGGLTVRAPYGAVGHGGHYHSQSPEAFFCHVPGLKVVIPRSPRQAKGLLL  195 (275)
Q Consensus       116 ~~f~~F~~ra~dQi~~~~a~~~~~~~~~~~v~~iv~~~~~g~~g~~g~~Hs~~d~a~lr~iPnl~V~~P~d~~e~~~ll~  195 (275)
                      ++|.+|+.+++|||+|++|+.+||++++.++ |++++.++|..+.+|+|||++|+++++++|||+|++|+|+.|++++++
T Consensus        82 ~~~~df~~~a~dqi~n~~ak~~~~~~~~~~~-p~vir~~~g~~~~~g~~Hs~~~~s~~~~iPgl~Vv~Ps~~~da~~ll~  160 (204)
T d1qs0b1          82 IQFADYFYPASDQIVSEMARLRYRSAGEFIA-PLTLRMPCGGGIYGGQTHSQSPEAMFTQVCGLRTVMPSNPYDAKGLLI  160 (204)
T ss_dssp             CSCGGGCGGGHHHHHTTTTTHHHHTTTSSCC-CCEEEEEECCSSSCCSSSSCCCHHHHTTSTTCEEECCCSHHHHHHHHH
T ss_pred             EEecchhhHHHHHHHHHHHHhhcccccCccc-ceEEEcCcccccCcccccccCHHHHHhcCCCcEEEeeCCHHHHHHHHH
Confidence            9999999999999999999999999999999 999999888777788999999999999999999999999999999999


Q ss_pred             HhhcCCCcEEEecccccccccccccCCCCCcccCCc--eEEeeeC
Q 023945          196 SCIRDPNPVVFFEPKWLYRLSVEEVPEDDYMLPLSE--AEVIREG  238 (275)
Q Consensus       196 ~a~~~~~P~~i~~pk~l~r~~~~~v~~~~~~~~~Gk--~~v~~~G  238 (275)
                      +++++++|++|+|||.||+.. .+++++.+..|+|+  +.++|+|
T Consensus       161 ~a~~~~~Pvi~~e~k~ly~~~-~~~~~~~~~~p~~~~~~~~v~~G  204 (204)
T d1qs0b1         161 ASIECDDPVIFLEPKRLYNGP-FDGHHDRPVTPWSKHPHSAVPDG  204 (204)
T ss_dssp             HHHHSSSCEEEEEEGGGSSSC-CCSCSSSCCCCSTTSTTCEEESS
T ss_pred             HHHhCCCcEEEEeeHHHhCCC-ccCCCccCCCCcccCccccCCCC
Confidence            999999999999999999865 35666667778887  7888876
>d1ik6a1 c.36.1.7 (A:1-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d2bfdb1 c.36.1.7 (B:2-204) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1umdb1 c.36.1.7 (B:2-187) Branched-chain alpha-keto acid dehydrogenase, Pyr module {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1w85b1 c.36.1.7 (B:1-192) Pyruvate dehydrogenase E1-beta, PdhB, N-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d2ozlb1 c.36.1.7 (B:0-191) E1-beta subunit of pyruvate dehydrogenase, Pyr module {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1itza2 c.36.1.6 (A:348-539) Transketolase (TK), Pyr module {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1gpua2 c.36.1.6 (A:338-534) Transketolase (TK), Pyr module {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r9ja1 c.36.1.6 (A:337-526) Transketolase (TK), Pyr module {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2r8oa1 c.36.1.6 (A:333-527) Transketolase (TK), Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1umdb2 c.48.1.2 (B:188-324) Branched-chain alpha-keto acid dehydrogenase {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d2bfdb2 c.48.1.2 (B:205-342) Branched-chain alpha-keto acid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2ozlb2 c.48.1.2 (B:192-329) E1-beta subunit of pyruvate dehydrogenase, C-domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1w85b2 c.48.1.2 (B:193-324) Pyruvate dehydrogenase E1-beta, PdhB, C-terminal domain {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1ik6a2 c.48.1.2 (A:192-326) E1-beta subunit of pyruvate dehydrogenase, C-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Back     information, alignment and structure
>d1qs0b2 c.48.1.2 (B:206-339) 2-oxoisovalerate dehydrogenase E1b, C-domain {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ieaa1 c.36.1.6 (A:471-700) Pyruvate dehydrogenase E1 component, Pyr module {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gpua3 c.48.1.1 (A:535-680) Transketolase (TK), C-domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2r8oa3 c.48.1.1 (A:528-663) Transketolase (TK), C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1itza3 c.48.1.1 (A:540-675) Transketolase (TK), C-domain {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1r9ja3 c.48.1.1 (A:527-669) Transketolase (TK), C-domain {Leishmania mexicana mexicana [TaxId: 44270]} Back     information, alignment and structure
>d2c42a1 c.36.1.8 (A:2-258) Pyruvate-ferredoxin oxidoreductase, PFOR, domain I {Desulfovibrio africanus [TaxId: 873]} Back     information, alignment and structure
>d2ieaa3 c.48.1.1 (A:701-886) Pyruvate dehydrogenase E1 component, C-domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2djia2 c.36.1.5 (A:3-186) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d2ji7a3 c.36.1.9 (A:370-552) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d1q6za2 c.36.1.5 (A:2-181) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ez9a2 c.36.1.5 (A:9-182) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure
>d1t9ba2 c.36.1.5 (A:89-263) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1pvda2 c.36.1.5 (A:2-181) Pyruvate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1zpda2 c.36.1.5 (A:2-187) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d1ovma2 c.36.1.5 (A:3-180) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1ozha2 c.36.1.5 (A:7-187) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d1ybha2 c.36.1.5 (A:86-280) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1t9ba3 c.36.1.9 (A:461-687) Acetohydroxyacid synthase catalytic subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1q6za3 c.36.1.9 (A:342-524) Benzoylformate decarboxylase {Pseudomonas putida [TaxId: 303]} Back     information, alignment and structure
>d2ji7a2 c.36.1.5 (A:7-194) Oxalyl-CoA decarboxylase {Oxalobacter formigenes [TaxId: 847]} Back     information, alignment and structure
>d2ihta3 c.36.1.9 (A:375-572) Carboxyethylarginine synthase {Streptomyces clavuligerus [TaxId: 1901]} Back     information, alignment and structure
>d1ybha3 c.36.1.9 (A:460-667) Acetohydroxyacid synthase catalytic subunit {Thale cress (Arabidopsis thaliana), chloroplast [TaxId: 3702]} Back     information, alignment and structure
>d1ozha3 c.36.1.9 (A:367-558) Catabolic acetolactate synthase {Klebsiella pneumoniae [TaxId: 573]} Back     information, alignment and structure
>d2djia3 c.36.1.9 (A:364-592) Pyruvate oxidase {Aerococcus viridans [TaxId: 1377]} Back     information, alignment and structure
>d1ovma3 c.36.1.9 (A:356-551) Indole-3-pyruvate decarboxylase {Enterobacter cloacae [TaxId: 550]} Back     information, alignment and structure
>d1zpda3 c.36.1.9 (A:363-566) Pyruvate decarboxylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
>d2ez9a3 c.36.1.9 (A:366-593) Pyruvate oxidase {Lactobacillus plantarum [TaxId: 1590]} Back     information, alignment and structure