Citrus Sinensis ID: 025836

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWRPFREGFL
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHcccHHHHHHHHHHHHcccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccHHHHHHHccccccccccccHHHccccHHHHHccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccccccHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHHHHHHHHcccccEEEEcccccccccccccEcccccEEcccccccccc
Coil and Loop (DISEMBL)
MEEKLLRDLTREICSLLSTMAssglnngippieqsghfnrvdVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEaftwtdgeavTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMcdrdpaprqvllslpcitpqdLLAFEDALtktaspreqKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELkrgnlldwrpfregfl
Flexible Loop (DISEMBL)
MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSShaaqimpqkielkrgnlldwrpfregfl
Low Complexity Region (SEG)
MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWRPFREGFL
Disordered region (IsUnstruct)
********LTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDAL***********************NLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWRP******
Disordered Region (DISOPRED)
MEEKLLRDLTREICSLLSTMA**********************************SMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAF****************MRSLLVSG*****************************************WRPFREGFL
Disordered Region (DISEMBL)
MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTK***********RSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWRPFREGFL
Disordered Region (DISPRO)
*EEKLLRDLTREICSLLSTMASSGL*****************VLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWRPFREGFL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGFLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWRPFREGFL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q0WP44	1202	Protein HASTY 1 OS=Arabid	yes	no	0.886	0.182	0.730	1e-83
Q54PQ8	1135	Exportin-5 OS=Dictyosteli	yes	no	0.421	0.091	0.298	0.0003

>sp|Q0WP44|HASTY_ARATH Protein HASTY 1 OS=Arabidopsis thaliana GN=HST1 PE=1 SV=1

 Score =  309 bits (792), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 160/219 (73%), Positives = 182/219 (83%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+  L DL AF S SMVGF
Sbjct: 960  MEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGF 1019

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+EL++FVSKD+FSA
Sbjct: 1020 LLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSA 1079

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            +IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A  KT
Sbjct: 1080 VIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEATAKT 1139

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
            +SP+EQKQ MRSLL+ GTGNNLKALAAQKS NVITNV++
Sbjct: 1140 SSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTA 1178

Nucleocytoplasmic transporter involved in the nuclear export of microRNAs (miRNAs). Required for several miRNAs accumulation. Specifically required for miR156 accumulation which targets SPL3, SPL4 and SPL5 transcription factors. Involved in plant development through its role in miRNAs processing. Required for vegetative phase change and vegetative to reproductive phase transition. Functionally dependent on RAN1 binding. Does not seem to be involved in small interfering RNAs (siRNAs) processing.
Arabidopsis thaliana (taxid: 3702)

>sp|Q54PQ8|XPO5_DICDI Exportin-5 OS=Dictyostelium discoideum GN=xpo5 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/104 (29%), Positives = 49/104 (47%)

Query: 105  NNIELQQFVSKDLFSAIIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPC 164
            N+ +  + +  ++F   I+ L +   A  S D+  + R I++        P+++LLSLP 
Sbjct: 1002 NDPKFFKLIGSEMFGCCIKILIVNKFAEFSNDIQSIIRLIYMKYYQICNYPQEILLSLPN 1061

Query: 165  ITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALAAQ 208
            ITP  L AF   L  T S + QK   + LL    G  L  L  +
Sbjct: 1062 ITPPILQAFNKDLISTRSEKSQKVLFKKLLQDVIGIPLNKLKKE 1105

Mediates the nuclear export of micro-RNA precursors, which form short hairpins.

Dictyostelium discoideum (taxid: 44689)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
225451181	1206	PREDICTED: protein HASTY 1 [Vitis vinife	0.886	0.181	0.789	1e-95
255542432	1430	conserved hypothetical protein [Ricinus	0.955	0.165	0.717	2e-95
356504082	1206	PREDICTED: protein HASTY 1-like [Glycine	0.886	0.181	0.703	8e-85
356573052	1206	PREDICTED: protein HASTY 1-like [Glycine	0.882	0.180	0.706	5e-84
449442883	1185	PREDICTED: protein HASTY 1-like [Cucumis	0.886	0.184	0.694	2e-82
307136050	1143	hypothetical protein [Cucumis melo subsp	0.894	0.193	0.687	3e-82
357512151	1191	Exportin-5 [Medicago truncatula] gi|3555	0.882	0.183	0.669	3e-82
79393760	1202	protein HASTY [Arabidopsis thaliana] gi|	0.886	0.182	0.730	6e-82
28629393	1202	HASTY [Arabidopsis thaliana]	0.886	0.182	0.730	7e-82
297833212	1202	hypothetical protein ARALYDRAFT_477786 [	0.894	0.183	0.719	1e-81

>gi|225451181|ref|XP_002272927.1| PREDICTED: protein HASTY 1 [Vitis vinifera] gi|298204940|emb|CBI34247.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 173/219 (78%), Positives = 196/219 (89%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTREIC+LLS +AS GLN G+P +EQSGH +R D+  LKDLDAFAS SMVGF
Sbjct: 963  MEEKLLRDLTREICALLSVLASPGLNTGLPSLEQSGHVSRGDMSSLKDLDAFASTSMVGF 1022

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LLKHK LALP  QISLEAFTWTDGEAVTKVSSFC  VVLLAI S+N+EL++FV+KDLF A
Sbjct: 1023 LLKHKGLALPLSQISLEAFTWTDGEAVTKVSSFCGVVVLLAISSSNVELREFVAKDLFYA 1082

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            II+GLALESNA +SADLVGLCREIF+Y+ DRDP+PRQVLLSLPCITP DLLAFE+AL KT
Sbjct: 1083 IIQGLALESNAFVSADLVGLCREIFVYLSDRDPSPRQVLLSLPCITPYDLLAFEEALAKT 1142

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
            +SP+EQKQHM+SLL+  TGN LKALAAQKS+NVITNVS+
Sbjct: 1143 SSPKEQKQHMKSLLLLATGNKLKALAAQKSMNVITNVST 1181

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542432|ref|XP_002512279.1| conserved hypothetical protein [Ricinus communis] gi|223548240|gb|EEF49731.1| conserved hypothetical protein [Ricinus communis]

 Score =  354 bits (908), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 175/244 (71%), Positives = 201/244 (82%), Gaps = 8/244 (3%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTRE CSLLS +AS G+N G+P +EQSGH NR+D+  LKDLDAFA   MVGF
Sbjct: 965  MEEKLLRDLTRETCSLLSAIASPGVNTGLPSLEQSGHVNRIDISSLKDLDAFALNCMVGF 1024

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LLKHK LALPALQI LEAFTWTD EAVTKVSSFC+ V++LAI +N++EL++FVSKDLF A
Sbjct: 1025 LLKHKGLALPALQICLEAFTWTDSEAVTKVSSFCATVIVLAISTNSVELREFVSKDLFYA 1084

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            II+GL LESNAVISADLVGLCREI+IY+ DRDPAPRQ+LLSLPCIT QDL+AFE+ALTKT
Sbjct: 1085 IIKGLELESNAVISADLVGLCREIYIYLRDRDPAPRQILLSLPCITTQDLVAFEEALTKT 1144

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHAAQIMPQKIELKRGNLLDWR 240
            +SP+EQKQH++SLL+  TGN LKAL  +K            AQ M QK EL RGNL DWR
Sbjct: 1145 SSPKEQKQHLKSLLLLATGNKLKALLLRK--------QDLEAQSMLQKPELTRGNLWDWR 1196

Query: 241  PFRE 244
            PF E
Sbjct: 1197 PFCE 1200

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356504082|ref|XP_003520828.1| PREDICTED: protein HASTY 1-like [Glycine max]

 Score =  319 bits (817), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 154/219 (70%), Positives = 189/219 (86%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEE +LRDLTRE+CSLLS +AS  LN GIP +EQSGH +R+D+  LK+LD  AS SMVGF
Sbjct: 964  MEETILRDLTREMCSLLSVIASPPLNTGIPSLEQSGHVSRLDMSSLKNLDTVASCSMVGF 1023

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LLKH+ LALP L++ LEAFTWTDGEAVTK+SS+CSA+V+LAI +N+ EL ++VS+DLF++
Sbjct: 1024 LLKHEGLALPTLRMCLEAFTWTDGEAVTKISSYCSALVVLAIVTNHAELIEYVSRDLFTS 1083

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            II+GLALESNA+ISADLVG+CREIF+Y+CDR PAPRQVL+SLP IT  DL+AFE++LTKT
Sbjct: 1084 IIKGLALESNAIISADLVGICREIFVYLCDRHPAPRQVLMSLPNITTHDLVAFEESLTKT 1143

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
             SP+EQKQ  RSL    TGN LKALAAQK+VN+ITNVS+
Sbjct: 1144 FSPKEQKQLTRSLFQLATGNKLKALAAQKTVNIITNVST 1182

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356573052|ref|XP_003554679.1| PREDICTED: protein HASTY 1-like [Glycine max]

 Score =  316 bits (810), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 154/218 (70%), Positives = 187/218 (85%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEE +LRDLTRE+CSLLS +AS  LN GIP +EQSGH  R+D+  LK+LD  AS SMVGF
Sbjct: 964  MEETILRDLTREMCSLLSAIASPPLNTGIPSLEQSGHVCRLDMSSLKNLDTVASCSMVGF 1023

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LLKH+ L LP LQ+ LEAFTWTDGEAVTK+SS+CSA+V+LAI +N+ EL ++VS+DLF++
Sbjct: 1024 LLKHECLVLPTLQMCLEAFTWTDGEAVTKISSYCSALVVLAIVTNHAELVEYVSRDLFTS 1083

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            II+GLALESNA+ISADLVG+CREIF+Y+CDR PAPRQVL+SLP IT  DL+AFE++LTKT
Sbjct: 1084 IIKGLALESNAIISADLVGICREIFVYLCDRHPAPRQVLMSLPNITTHDLVAFEESLTKT 1143

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVS 218
             SP+EQKQ  RSLL   +GN LKALAAQK+VN+ITNVS
Sbjct: 1144 FSPKEQKQLTRSLLQLASGNKLKALAAQKTVNIITNVS 1181

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449442883|ref|XP_004139210.1| PREDICTED: protein HASTY 1-like [Cucumis sativus] gi|449482912|ref|XP_004156441.1| PREDICTED: protein HASTY 1-like [Cucumis sativus]

 Score =  311 bits (797), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 152/219 (69%), Positives = 182/219 (83%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTRE+CSLL+ MASS LN  +P +EQSGH NR  +   K LD ++S  MVGF
Sbjct: 942  MEEKLLRDLTREVCSLLAVMASSPLNPDLPSLEQSGHVNRAVISSPKHLDEYSSSCMVGF 1001

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LLKHK LA+ AL+I L+AFTWTDGEAV K+SSFCS +VLLAI +N+ EL +FVS+DLFSA
Sbjct: 1002 LLKHKGLAISALRICLDAFTWTDGEAVAKISSFCSTLVLLAISTNDGELNEFVSRDLFSA 1061

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            II+GL LESN   S+DLVGLCREIF+++ DR+PAPRQVLLSLPCI   DL+AFE+AL KT
Sbjct: 1062 IIQGLTLESNTFFSSDLVGLCREIFLFLSDRNPAPRQVLLSLPCIKHHDLVAFEEALAKT 1121

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
             SP+EQKQHM++LL+  TGN LKALAAQKS+N ITNVS+
Sbjct: 1122 FSPKEQKQHMKNLLLLATGNQLKALAAQKSINTITNVSA 1160

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|307136050|gb|ADN33901.1| hypothetical protein [Cucumis melo subsp. melo]

 Score =  310 bits (795), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 152/221 (68%), Positives = 183/221 (82%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTRE+CSLL+ MASS LN  +P +EQSGH NR  +   K LD ++S  MVGF
Sbjct: 900  MEEKLLRDLTREVCSLLAVMASSPLNPDLPSLEQSGHVNRAVLSSPKHLDEYSSSCMVGF 959

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LLKHK LA+ AL+I L+AFTWTDGEAV K+SSFCS +VLLAI +N+ EL +FVS+DLFSA
Sbjct: 960  LLKHKGLAISALRICLDAFTWTDGEAVAKISSFCSTLVLLAIATNDGELNEFVSRDLFSA 1019

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            II+GL LESN   S+DLVGLCREIF+++ DR+PAPRQVLLSLPCI   DL+AFE+AL KT
Sbjct: 1020 IIQGLTLESNTFFSSDLVGLCREIFLFLSDRNPAPRQVLLSLPCIKHHDLVAFEEALAKT 1079

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHA 221
             SP+EQKQHM++LL+  TGN LKALAAQKS+N ITNVS+ +
Sbjct: 1080 FSPKEQKQHMKNLLLLATGNQLKALAAQKSINTITNVSAKS 1120

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357512151|ref|XP_003626364.1| Exportin-5 [Medicago truncatula] gi|355501379|gb|AES82582.1| Exportin-5 [Medicago truncatula]

 Score =  310 bits (794), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 146/218 (66%), Positives = 186/218 (85%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEK+LRDLTRE+CSLLS +AS  LN G P +EQSGH  R D+  +K LDA AS S+VGF
Sbjct: 948  MEEKILRDLTREMCSLLSVIASPPLNTGFPSLEQSGHIIRFDMSSVKSLDAVASCSLVGF 1007

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LLKH+ LALP L++ LE FTWTDGEAVTK+SSFCS +V+++I +N+ EL ++VS+DLF++
Sbjct: 1008 LLKHESLALPTLRMCLEVFTWTDGEAVTKISSFCSTMVVISIVTNHTELIEYVSRDLFTS 1067

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            +I+GL+LESNA+IS+DLV +CREIF+ +CDR PAPRQ+L SLP +TP DL AFE++L+KT
Sbjct: 1068 VIQGLSLESNAIISSDLVAICREIFVNLCDRHPAPRQILQSLPFVTPHDLHAFEESLSKT 1127

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVS 218
            +SP+EQKQHM+SLL+  TGN LKALAAQKSVN+ITNVS
Sbjct: 1128 SSPKEQKQHMKSLLLLATGNKLKALAAQKSVNIITNVS 1165

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|79393760|ref|NP_187155.2| protein HASTY [Arabidopsis thaliana] gi|122229983|sp|Q0WP44.1|HASTY_ARATH RecName: Full=Protein HASTY 1; AltName: Full=Protein HASTY gi|110738356|dbj|BAF01105.1| hypothetical protein [Arabidopsis thaliana] gi|332640658|gb|AEE74179.1| protein HASTY [Arabidopsis thaliana]

 Score =  309 bits (792), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 160/219 (73%), Positives = 182/219 (83%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+  L DL AF S SMVGF
Sbjct: 960  MEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGF 1019

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+EL++FVSKD+FSA
Sbjct: 1020 LLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSA 1079

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            +IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A  KT
Sbjct: 1080 VIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEATAKT 1139

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
            +SP+EQKQ MRSLL+ GTGNNLKALAAQKS NVITNV++
Sbjct: 1140 SSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTA 1178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|28629393|gb|AAO34666.1| HASTY [Arabidopsis thaliana]

 Score =  309 bits (792), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 160/219 (73%), Positives = 182/219 (83%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+  L DL AF S SMVGF
Sbjct: 960  MEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGF 1019

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+EL++FVSKD+FSA
Sbjct: 1020 LLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSA 1079

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            +IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A  KT
Sbjct: 1080 VIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEATAKT 1139

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
            +SP+EQKQ MRSLL+ GTGNNLKALAAQKS NVITNV++
Sbjct: 1140 SSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTA 1178

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297833212|ref|XP_002884488.1| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata] gi|297330328|gb|EFH60747.1| hypothetical protein ARALYDRAFT_477786 [Arabidopsis lyrata subsp. lyrata]

 Score =  308 bits (789), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 159/221 (71%), Positives = 183/221 (82%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
            MEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+  L DL AF S SMVGF
Sbjct: 960  MEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGF 1019

Query: 61   LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
            LL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+EL++FVSKD+FSA
Sbjct: 1020 LLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSA 1079

Query: 121  IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
            +IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A  KT
Sbjct: 1080 VIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEAAAKT 1139

Query: 181  ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSSHA 221
             SP+EQKQ MRSLL+ GTGNNLKALAAQK++NVITNV++ +
Sbjct: 1140 TSPKEQKQLMRSLLLLGTGNNLKALAAQKNLNVITNVTARS 1180

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2114784	1202	HST "AT3G05040" [Arabidopsis t	0.886	0.182	0.730	5.6e-80

TAIR|locus:2114784 HST "AT3G05040" [Arabidopsis thaliana (taxid:3702)]

 Score = 808 (289.5 bits), Expect = 5.6e-80, P = 5.6e-80
 Identities = 160/219 (73%), Positives = 182/219 (83%)

Query:     1 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKSMVGF 60
             MEEKLLRDLTREI +L STMAS GLN G+P +E SGH  RVD+  L DL AF S SMVGF
Sbjct:   960 MEEKLLRDLTREIATLFSTMASPGLNTGVPVLEHSGHVGRVDMSTLTDLHAFRSNSMVGF 1019

Query:    61 LLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSA 120
             LL HK +ALPALQI LE FTWTDGEA TKV  FC  VVLLA  +NN+EL++FVSKD+FSA
Sbjct:  1020 LLNHKSVALPALQICLETFTWTDGEATTKVCYFCGVVVLLAKLTNNVELREFVSKDMFSA 1079

Query:   121 IIRGLALESNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALTKT 180
             +IRGL +ESNA+ S DLV +CREIFIY+ DRDPAPRQVLLSLPC+TP DL AFE+A  KT
Sbjct:  1080 VIRGLGMESNAINSPDLVNICREIFIYLSDRDPAPRQVLLSLPCLTPNDLHAFEEATAKT 1139

Query:   181 ASPREQKQHMRSLLVSGTGNNLKALAAQKSVNVITNVSS 219
             +SP+EQKQ MRSLL+ GTGNNLKALAAQKS NVITNV++
Sbjct:  1140 SSPKEQKQLMRSLLLLGTGNNLKALAAQKSQNVITNVTA 1178


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.321   0.134   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      247       247   0.00078  114 3  11 22  0.40    33
                                                     32  0.46    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  601 (64 KB)
  Total size of DFA:  167 KB (2098 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.34u 0.08s 20.42t   Elapsed:  00:00:01
  Total cpu time:  20.34u 0.08s 20.42t   Elapsed:  00:00:01
  Start:  Sat May 11 04:50:13 2013   End:  Sat May 11 04:50:14 2013

GO:0005487 "nucleocytoplasmic transporter activity" evidence=NAS

GO:0005635 "nuclear envelope" evidence=NAS

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0048364 "root development" evidence=IMP

GO:0035281 "pre-miRNA export from nucleus" evidence=IMP;TAS

GO:0009910 "negative regulation of flower development" evidence=IMP

GO:0009944 "polarity specification of adaxial/abaxial axis" evidence=IMP

GO:0009965 "leaf morphogenesis" evidence=IMP

GO:0048367 "shoot system development" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WP44	HASTY_ARATH	No assigned EC number	0.7305	0.8866	0.1821	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00031073001	SubName- Full=Chromosome chr14 scaffold_54, whole genome shotgun sequence; (1207 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00034551001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (267 aa)						•			0.800
	GSVIVG00032601001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (254 aa)						•			0.800
	GSVIVG00032600001	SubName- Full=Chromosome chr4 scaffold_6, whole genome shotgun sequence; (241 aa)						•			0.800
	GSVIVG00034073001	SubName- Full=Chromosome chr9 scaffold_7, whole genome shotgun sequence; (992 aa)							•		0.404

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PF08767	319	CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1	83.37
PF13660	238	DUF4147: Domain of unknown function (DUF4147); PDB	81.41

>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES)

Probab=83.37  E-value=39  Score=31.43  Aligned_cols=92  Identities=17%  Similarity=0.215  Sum_probs=54.4

Q ss_pred             hhHHHHHHH---HHHHHHHHHhcccchHhhHHHHHHHHHHHHHH------hcCCCc-----------cHHHHHHh-CCCC
Q 025836          107 IELQQFVSK---DLFSAIIRGLALESNAVISADLVGLCREIFIY------MCDRDP-----------APRQVLLS-LPCI  165 (247)
Q Consensus       107 ~~l~efi~~---ev~~a~L~~L~~~~f~d~q~eL~~L~~~Iy~~------l~p~~~-----------~pr~VL~s-LP~I  165 (247)
                      +...+|...   ++++-++..|+|+......+.-..+++.++..      =.|..+           ...+.|.+ -|++
T Consensus       202 ~~~~~F~~~y~~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l  281 (319)
T PF08767_consen  202 EFANQFYQQYYLDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGSIQVPLFDPGMSNQEFVSEYIANLLSEAFPNL  281 (319)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT-SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHcccccccccCCCCccHHHHHHHHHHHHHHhCCCC
Confidence            334444443   34555556666665555444444444444422      112222           23345554 4999


Q ss_pred             CHHhHHHHHHHHhcCCC-hHHHHHHHHHHHhccC
Q 025836          166 TPQDLLAFEDALTKTAS-PREQKQHMRSLLVSGT  198 (247)
Q Consensus       166 ~~~~l~~f~~~L~~~~s-~K~QR~l~~~LL~~~~  198 (247)
                      +++.+..|-..|-+... ...=|.+++|||-.++
T Consensus       282 ~~~qi~~fv~~Lf~~~~d~~~Fk~~lrDFlI~~k  315 (319)
T PF08767_consen  282 SPKQIENFVQGLFELNNDPEKFKTHLRDFLIQLK  315 (319)
T ss_dssp             -HHHHHHHHHHHHHTTT-HHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhh
Confidence            99999999999977654 7777999999998765

CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.

>PF13660 DUF4147: Domain of unknown function (DUF4147); PDB: 1X3L_A 2B8N_A

Probab=81.41  E-value=1.8  Score=38.96  Aligned_cols=75  Identities=19%  Similarity=0.308  Sum_probs=49.7

Q ss_pred             HHHhCC--CCCHHhHHHHHHHHhcCCChHHHHHHHHHHHhccCCCchHHHh-hhcccc-cccccccccccccccccccc
Q 025836          158 VLLSLP--CITPQDLLAFEDALTKTASPREQKQHMRSLLVSGTGNNLKALA-AQKSVN-VITNVSSHAAQIMPQKIELK  232 (247)
Q Consensus       158 VL~sLP--~I~~~~l~~f~~~L~~~~s~K~QR~l~~~LL~~~~g~~l~a~~-~~k~~~-~i~~v~~~~~~~~~~~~~~~  232 (247)
                      =|+.+|  ||+-+|+.++.+.|.+.+.+-++=+.+++-|..+||-.|-..+ ..+-.+ ++.||---+...-..|++.-
T Consensus       129 ALl~~P~~gisLed~~~~~~~Ll~sGa~I~EiN~VRkhLS~vKGG~La~~~~~a~v~sLilSDV~Gd~l~~IaSGPt~p  207 (238)
T PF13660_consen  129 ALLELPADGISLEDKQELTKLLLRSGADIHEINTVRKHLSRVKGGRLARAAAPARVVSLILSDVPGDDLSVIASGPTVP  207 (238)
T ss_dssp             HHS--B-TT--HHHHHHHHHHHHHCT--HHHHHHHHHTTBSSTTTHHHHCHTTSEEEEEEE--STT--TTTGGG-TTS-
T ss_pred             HhhcCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCchHHHHHhcCCeEEEEEecCCCCCChhhcccCCccC
Confidence            455555  8999999999999999999999999999999999999988776 333333 78888877776443344443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	8e-34

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens} Length = 1204

 Score =  127 bits (320), Expect = 8e-34
 Identities = 44/211 (20%), Positives = 83/211 (39%), Gaps = 8/211 (3%)

Query: 1    MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLFLKDLDAFASKS-MVG 59
            +EE+L+R LTRE+  L++    S           +   +   +       A A  + +  
Sbjct: 957  LEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGK 1016

Query: 60   FLLKHKDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFS 119
             L+KH+D+    L  +  +  W D  +  + +S     +L  + S    L       LF+
Sbjct: 1017 CLMKHEDVCTALLITAFNSLAWKDTLSCQRTTSQLCWPLLKQVLSG--TLLADAVTWLFT 1074

Query: 120  AIIRGLALE-SNAVISADLVGLCREIFIYMCDRDPAPRQVLLSLPCITPQDLLAFEDALT 178
            ++++GL +   +    A LV L  +I+  +  R    R V+  +P I    L  F+  L 
Sbjct: 1075 SVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRAVMEQIPEIQKDSLDQFDCKLL 1134

Query: 179  KT----ASPREQKQHMRSLLVSGTGNNLKAL 205
                   + + +K   + L+    G  L   
Sbjct: 1135 NPSLQKVADKRRKDQFKRLIAGCIGKPLGEQ 1165

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	100.0
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.72
2x1g_F	971	Cadmus; transport protein, developmental protein,	95.02
2x19_B	963	Importin-13; nuclear transport, protein transport;	94.59

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=100.00  E-value=1e-33  Score=296.06  Aligned_cols=204  Identities=21%  Similarity=0.278  Sum_probs=123.6

Q ss_pred             ChhhHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcCCCccchhhhh-hcchhhhhhhhHHHHHhcCcccHHHHHHHHhhhh
Q 025836            1 MEEKLLRDLTREICSLLSTMASSGLNNGIPPIEQSGHFNRVDVLF-LKDLDAFASKSMVGFLLKHKDLALPALQISLEAF   79 (247)
Q Consensus         1 leE~lLRqLTr~vv~ll~~~~~p~~~~~~~s~~~~~~~~~~~~st-~~~~~~~~~~~L~~~iL~~~~i~~plL~~~~~~l   79 (247)
                      |||+|||||||++|+++..++.++.+..+.+..+.+.+++.++++ ..+......++||+|+|+|+++++|+|.+|+|+|
T Consensus       957 ~~e~llr~lTr~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~l~~~~~~l 1036 (1204)
T 3a6p_A          957 LEEQLVRMLTREVMDLITVCCVSKKGADHSSAPPADGDDEEMMATEVTPSAMAELTDLGKCLMKHEDVCTALLITAFNSL 1036 (1204)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHBC------------------------------CBCHHHHHHHSSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCCCccccccccccccccccccccccchhhcchHHHHHhcCHHHHHHHHHHHHHHh
Confidence            589999999999999999988877433333322222233233333 2333344558999999999999999999999999


Q ss_pred             ccccCc-chhhhhhhhhHHHHHHhcCCchhHHHHHHHHHHHHHHHHhc-ccchHhhHHHHHHHHHHHHHHhcCCCccHHH
Q 025836           80 TWTDGE-AVTKVSSFCSAVVLLAIQSNNIELQQFVSKDLFSAIIRGLA-LESNAVISADLVGLCREIFIYMCDRDPAPRQ  157 (247)
Q Consensus        80 ~wkDt~-~~~~~~sf~~~lv~~~i~~~~~~l~efi~~ev~~a~L~~L~-~~~f~d~q~eL~~L~~~Iy~~l~p~~~~pr~  157 (247)
                      +|+||+ ||.+++.||..++ +.+.. +..+.++ +.++|+++|+||. ...+.++|+|+++|++.||+.|+|++++||+
T Consensus      1037 ~~~D~~~~~~~~~~~~~~~v-~~~~~-~~~~~~~-~~~l~~~vl~~l~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~~ 1113 (1204)
T 3a6p_A         1037 AWKDTLSCQRTTSQLCWPLL-KQVLS-GTLLADA-VTWLFTSVLKGLQMHGQHDGCMASLVHLAFQIYEALRPRYLEIRA 1113 (1204)
T ss_dssp             TSSCHHHHHHHHHHTHHHHH-TTSCS-SCCCHHH-HHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHSTTTCSTHHH
T ss_pred             cccCcHHHHHHHHHHHHHHH-HHHhc-ccCchHH-HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHhCCCCccHHH
Confidence            999999 7788888887774 44332 2222333 5555555555554 3333449999999999999999999999999


Q ss_pred             HHHhCCCCCHHhHHHHHHHHhcCCC----hHHHHHHHHHHHhccCCCchHHHhh
Q 025836          158 VLLSLPCITPQDLLAFEDALTKTAS----PREQKQHMRSLLVSGTGNNLKALAA  207 (247)
Q Consensus       158 VL~sLP~I~~~~l~~f~~~L~~~~s----~K~QR~l~~~LL~~~~g~~l~a~~~  207 (247)
                      ||++||||+++++++|+++|.++.+    +|+||++|||||.+++|+++..+..
T Consensus      1114 vl~~lP~i~~~~~~~f~~~l~~~~~~~~~~k~qr~~~~~ll~~~~g~~~~~~~~ 1167 (1204)
T 3a6p_A         1114 VMEQIPEIQKDSLDQFDCKLLNPSLQKVADKRRKDQFKRLIAGCIGKPLGEQFR 1167 (1204)
T ss_dssp             HHTTSSSCCHHHHHHHHHHSSCC-------------------------------
T ss_pred             HHHhCCCCCHHHHHHHHHHHhcccccccchHHHHHHHHHHHHHhcCCcHHHhhc
Confidence            9999999999999999999987654    9999999999999999999777643

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=95.72  E-value=0.17  Score=51.69  Aligned_cols=136  Identities=15%  Similarity=0.024  Sum_probs=85.2

Q ss_pred             cccHHHHHHHHhhhhccccCcchhhhhhhhhHHHHHHhcCCc-hhHHHHH---HHHHHHHHHHHhcccchHhhHHHHHHH
Q 025836           65 KDLALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNN-IELQQFV---SKDLFSAIIRGLALESNAVISADLVGL  140 (247)
Q Consensus        65 ~~i~~plL~~~~~~l~wkDt~~~~~~~sf~~~lv~~~i~~~~-~~l~efi---~~ev~~a~L~~L~~~~f~d~q~eL~~L  140 (247)
                      +.....++..+..++.-+|...+..++.|..-++...-...+ .....|+   ...+++.++.+|.+..+.........+
T Consensus       844 ~~~~~~v~~~~~~al~~~~~~~~~~~l~~l~~l~~~~~~~~~~~~~~~f~~~~~~~l~~~~~~~l~~~~h~s~~~~~~~~  923 (1049)
T 3m1i_C          844 PAAFKLFVDAICWAFKHNNRDVEVNGLQIALDLVKNIERMGNVPFANEFHKNYFFIFVSETFFVLTDSDHKSGFSKQALL  923 (1049)
T ss_dssp             HHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHHHHHHSTTCGGGHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHhcchHhhhHHHHHHH
Confidence            333455666677777767766666666777666654432112 2233333   245556666666666655555555566


Q ss_pred             HHHHHHHh------cCCCc------------cHHH----HH-HhCCCCCHHhHHHHHHHHhcCCChHHH-HHHHHHHHhc
Q 025836          141 CREIFIYM------CDRDP------------APRQ----VL-LSLPCITPQDLLAFEDALTKTASPREQ-KQHMRSLLVS  196 (247)
Q Consensus       141 ~~~Iy~~l------~p~~~------------~pr~----VL-~sLP~I~~~~l~~f~~~L~~~~s~K~Q-R~l~~~LL~~  196 (247)
                      ++.++...      .|.|+            ..++    +| .+.|++++++++.|-+.|.+...++.. |+++++|+..
T Consensus       924 l~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~f~~~~rdf~~~ 1003 (1049)
T 3m1i_C          924 LMKLISLVYDNKISVPLYQEAEVPQGTSNQVYLSQYLANMLSNAFPHLTSEQIASFLSALTKQYKDLVVFKGTLRDFLVQ 1003 (1049)
T ss_dssp             HHHHHHHHHTTCCCSCSSCGGGSSTTCCHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcccccccCccccCCCCCcHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHccCCHHHHHHHHHHHhHh
Confidence            66655322      23321            1223    33 557999999999999999888777876 9999999999


Q ss_pred             cCCC
Q 025836          197 GTGN  200 (247)
Q Consensus       197 ~~g~  200 (247)
                      +++-
T Consensus      1004 ~~~~ 1007 (1049)
T 3m1i_C         1004 IKEV 1007 (1049)
T ss_dssp             HTSS
T ss_pred             hhhh
Confidence            9654

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=95.02  E-value=0.12  Score=52.00  Aligned_cols=131  Identities=11%  Similarity=0.125  Sum_probs=82.6

Q ss_pred             HHHHHHHHhhhhccccCcchhhhhhhhhHHHHHHhcCCchhHHHHHH---HHHHHHHHHHhcccchHhhHHHHHHHHHHH
Q 025836           68 ALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQFVS---KDLFSAIIRGLALESNAVISADLVGLCREI  144 (247)
Q Consensus        68 ~~plL~~~~~~l~wkDt~~~~~~~sf~~~lv~~~i~~~~~~l~efi~---~ev~~a~L~~L~~~~f~d~q~eL~~L~~~I  144 (247)
                      +.+++.+...++.-+|...+.-++.|.+.++....  ..+.+++|+.   ..+...++.++....-.....+++.++..+
T Consensus       827 l~~i~~~~~~~l~~~~~~~~~s~~~fl~~~i~~~~--~~~~~~~~~~~~g~~l~~~l~~~~~~~~~~s~~~~~a~~l~~l  904 (971)
T 2x1g_F          827 YDRLVFYAQRGMTLPESGAIRNSIQFLTHFVMQSR--NHAHVTEVVLATGEQTLYTAMMCVGYLTPRSQVDKFADILLAM  904 (971)
T ss_dssp             HHHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHHHHHHHTTSCGGGGGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--chHHHHHHHHHhHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence            57788888888887777666666678777655421  2344555443   455555655553332233444555555555


Q ss_pred             HHHhcCCC-ccHHHHHH--hCC--CCCHHhHHHHHHHHhcCC-ChHHHHHHHHHHHhccCCC
Q 025836          145 FIYMCDRD-PAPRQVLL--SLP--CITPQDLLAFEDALTKTA-SPREQKQHMRSLLVSGTGN  200 (247)
Q Consensus       145 y~~l~p~~-~~pr~VL~--sLP--~I~~~~l~~f~~~L~~~~-s~K~QR~l~~~LL~~~~g~  200 (247)
                      +..+...+ +...++|.  .+|  ++++++.++|-++|.+.+ +.|.=|.++++|...++|-
T Consensus       905 ~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~r~~~~~~~~f~~~~r~~  966 (971)
T 2x1g_F          905 NRKYAAEMAVWMKSLMSTPNFPTQLITDADKTRYTALIIKEKVNKRLLQQHLSEMAMKTRGL  966 (971)
T ss_dssp             HHHHHHHHHHHHHHHHTSSSCSCSSSCHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHCcHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHcCc
Confidence            54432111 12334443  577  489999999999996664 7888899999999998764

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=94.59  E-value=0.075  Score=53.17  Aligned_cols=131  Identities=10%  Similarity=0.151  Sum_probs=83.7

Q ss_pred             HHHHHHHHhhhhccccCcchhhhhhhhhHHHHHHhcCCchhHHHH---HHHHHHHHHHHHhcccchHhhHHHHHHHHHHH
Q 025836           68 ALPALQISLEAFTWTDGEAVTKVSSFCSAVVLLAIQSNNIELQQF---VSKDLFSAIIRGLALESNAVISADLVGLCREI  144 (247)
Q Consensus        68 ~~plL~~~~~~l~wkDt~~~~~~~sf~~~lv~~~i~~~~~~l~ef---i~~ev~~a~L~~L~~~~f~d~q~eL~~L~~~I  144 (247)
                      +.+++..+..++.-.|...+..++.|..-++....  ....+.+|   .+..++..++.++.+........++..++..+
T Consensus       815 ~~~i~~~~~~~l~~~~~~~~~~~l~~l~~l~~~~~--~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~il~~l  892 (963)
T 2x19_B          815 VKAVFQCAVLALKFPEAPTVKASCGFFTELLPRCG--EVESVGKVVQEDGRMLLIAVLEAIGGQASRSLMDCFADILFAL  892 (963)
T ss_dssp             HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHGGGTT--SSCHHHHHTTTSHHHHHHHHHHHHTTTSCGGGHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHhcccCChhHHHHHHHHHHHH
Confidence            77788888888886776666666676666543211  12233333   25677777777776543333445556555666


Q ss_pred             HHHhcCCCc-cHHHHHH--hCC--CCCHHhHHHHHHHHhcCC-ChHHHHHHHHHHHhccCCC
Q 025836          145 FIYMCDRDP-APRQVLL--SLP--CITPQDLLAFEDALTKTA-SPREQKQHMRSLLVSGTGN  200 (247)
Q Consensus       145 y~~l~p~~~-~pr~VL~--sLP--~I~~~~l~~f~~~L~~~~-s~K~QR~l~~~LL~~~~g~  200 (247)
                      +..+...+. ...++|.  .+|  +++++..++|-++|.+.+ ..|.=|..+++|+..++|-
T Consensus       893 ~~~~~~~~~~~l~~~l~~~~~p~~~~~~~~~~~f~~~l~~~~~~~~~f~~~l~~F~~~~r~~  954 (963)
T 2x19_B          893 NKHCFSLLSMWIKEALQPPGFPSARLSPEQKDTFSQQILRERVNKRRVKEMVKEFTLLCRGL  954 (963)
T ss_dssp             HHHSHHHHHHHHHHHTCSTTSSCTTCCHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHC-
T ss_pred             HHHChHHHHHHHHHHhcccCCCCCcCCHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHcCc
Confidence            554221111 1333442  588  899999999999997665 7888899999999998763

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00