Citrus Sinensis ID: 025859

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------
Protein Sequence
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQF
Secondary Structure (PSIPRED)
ccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccHHHHHHHHHHccccccccccccEEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccEEEEEccEEcccccccccccccccccccccHHHHHHHccccccEEEEEEccccccccccccccccccccEEEccccEEEccccHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHccEEEEEEEcccccccccHHHHHHHHHccccccccccccEEEEEEEccccccEEEEEEccccccccccccccccccccccccccHHcccccccccEEEEEEEEEccccccccccccHHHHHHHHHHHHHHHccccccEEEEEEEccEEEcccccccccccccccEEEccccEEEccHHHHHHccc
Coil and Loop (DISEMBL)
msqsndssnpeekehDLESIFQQKRILRSQVRKTLksmdpslrshedNAIQKIVLeapwfkssqRLCAYISCsalrevdtSKLLSQILqipnadgdtktrkklyvprvedknshmrmFHISSIDDLIANsmnilepapvdadgneredvmqanepvdlfllpglafdrsgrrlgrgggyYDTFLKKYQELAKERNWRQPLFVALSYSLQIMdegiisatpkdmpvdalvspsgvipisAAALDRMQF
Flexible Loop (DISEMBL)
msqsndssnpeekehdlesifqqkrilRSQVRKTLKsmdpslrshednAIQKIVLeapwfkssqRLCAYISCSALREVDTSKLLSQIlqipnadgdtktrkklyvprvedknshmrMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQF
Low Complexity Region (SEG)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDrsgrrlgrgggYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQF
Disordered region (IsUnstruct)
************************************************AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNA********KLYVPRV*****HMRMFHISSIDDLIANSMNIL********************PVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALV****VI************
Disordered Region (DISOPRED)
*************************ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAAL*****
Disordered Region (DISEMBL)
******************SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQF
Disordered Region (DISPRO)
****************L*SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDR*QF
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	247	2.2.26 [Sep-21-2011]
Q9D110	203	5-formyltetrahydrofolate	yes	no	0.732	0.891	0.297	5e-17
P80405	201	5-formyltetrahydrofolate	yes	no	0.744	0.915	0.287	7e-17
P49914	203	5-formyltetrahydrofolate	yes	no	0.732	0.891	0.292	7e-17
Q9P7W2	204	Probable 5-formyltetrahyd	yes	no	0.769	0.931	0.306	2e-15
Q9XWE6	206	Probable 5-formyltetrahyd	yes	no	0.736	0.883	0.247	2e-13
P40099	211	5-formyltetrahydrofolate	yes	no	0.777	0.909	0.272	1e-11
Q8K9E3	199	Uncharacterized protein B	yes	no	0.724	0.899	0.248	1e-09
P0AC28	182	Uncharacterized protein Y	N/A	no	0.538	0.730	0.276	4e-07
P0AC29	182	Uncharacterized protein Y	N/A	no	0.538	0.730	0.276	4e-07
Q89AD6	195	Uncharacterized protein b	yes	no	0.570	0.723	0.271	5e-07

>sp|Q9D110|MTHFS_MOUSE 5-formyltetrahydrofolate cyclo-ligase OS=Mus musculus GN=Mthfs PE=2 SV=2

 Score = 88.2 bits (217), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 63/212 (29%), Positives = 113/212 (53%), Gaps = 31/212 (14%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR+++++ L+++    R  +   + + V+    +++S+R+  ++S     EV+T  +
Sbjct: 10  KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
           +  I          K  K  ++PR + +++HM M  ++S ++   L   S NI +P    
Sbjct: 68  IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG--- 115

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKK---YQELAKERNWR 197
            +G+ RE+ +     +DL  LPGL FD+ G RLGRG GYYDT+LK+   +QE+       
Sbjct: 116 -EGDVREEALSTG-GLDLIFLPGLGFDKDGNRLGRGKGYYDTYLKRCVQHQEV------- 166

Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
           +P  +AL++  QI  +  I     DM VD ++
Sbjct: 167 KPYTMALAFKEQICPQ--IPVDEHDMKVDEVL 196

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.
Mus musculus (taxid: 10090)
EC: 6EC: .EC: 3EC: .EC: 3EC: .EC: 2

>sp|P80405|MTHFS_RABIT 5-formyltetrahydrofolate cyclo-ligase OS=Oryctolagus cuniculus GN=MTHFS PE=1 SV=1

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 60/209 (28%), Positives = 112/209 (53%), Gaps = 25/209 (11%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR+++++ L+++    R      + + V+    ++ SQR+  ++S     E++T ++
Sbjct: 10  KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
           +  I Q           K  ++PR   +++HM M  ++S D++ +    S NI +P+  D
Sbjct: 68  IKDIFQ---------QGKVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPL 200
                RE+ + A   +DL  +PGL FDR+G RLGRG GYYDT+L++      ++   +P 
Sbjct: 119 T----REEAL-ATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYLQR----CLQQQGAKPY 169

Query: 201 FVALSYSLQIMDEGIISATPKDMPVDALV 229
            +AL++  QI  +  +  T  D+ VD ++
Sbjct: 170 TIALAFREQICPQVPVDDT--DVSVDEVL 196

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Oryctolagus cuniculus (taxid: 9986)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P49914|MTHFS_HUMAN 5-formyltetrahydrofolate cyclo-ligase OS=Homo sapiens GN=MTHFS PE=1 SV=2

 Score = 87.8 bits (216), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 62/212 (29%), Positives = 108/212 (50%), Gaps = 31/212 (14%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPVD 140
           +  I Q           K  ++PR   +++HM M  I S   I  L   S NI +P    
Sbjct: 68  IKDIFQ---------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG--- 115

Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKK---YQELAKERNWR 197
            +G+ RE+ +     +DL  +PGL FD+ G RLGRG GYYD +LK+   +QE+       
Sbjct: 116 -EGDVREEALSTG-GLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEV------- 166

Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
           +P  +AL++  QI  +  +     DM VD ++
Sbjct: 167 KPYTLALAFKEQICLQ--VPVNENDMKVDEVL 196

Contributes to tetrahydrofolate metabolism. Helps regulate carbon flow through the folate-dependent one-carbon metabolic network that supplies carbon for the biosynthesis of purines, thymidine and amino acids.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9P7W2|FTHC_SCHPO Probable 5-formyltetrahydrofolate cyclo-ligase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1703.08c PE=3 SV=1

 Score = 82.8 bits (203), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 66/215 (30%), Positives = 103/215 (47%), Gaps = 25/215 (11%)

Query: 28  RSQVRKTLKSMDPSLRSH----EDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           ++Q+R  L S    L  H    +  +I K V+E P +K  + +C Y++    +EV T  L
Sbjct: 5   KNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPK-KEVRTRCL 63

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSH-MRMFHI-SSIDDLIANSMNILEPAPVDA 141
           +         D   K  K +++P+     SH M M+ +    + L  N   I EP     
Sbjct: 64  I---------DVAFKEGKNVFIPKC--IGSHVMEMYQVFEKTESLTINKWGIAEP----- 107

Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLF 201
           +G  R+ +M      +L ++PG+AFD    RLG G GYYD ++ KYQ  A ++  R  +F
Sbjct: 108 NGESRK-IMDDETDCELIIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANMF 166

Query: 202 -VALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
            V +    QI+    I    +D  +DALV+P  VI
Sbjct: 167 KVGICLKEQILPNREIPMDTRDQKLDALVTPEKVI 201

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q9XWE6|MTHFS_CAEEL Probable 5-formyltetrahydrofolate cyclo-ligase OS=Caenorhabditis elegans GN=Y106G6E.4 PE=3 SV=1

 Score = 75.9 bits (185), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/210 (24%), Positives = 102/210 (48%), Gaps = 28/210 (13%)

Query: 27  LRSQVRKTLKSMDPSLRSHEDN----AIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82
           ++S++R+ +K++   +   E      A+ + ++E+ WF+ S+RL  Y+S S   E+ T  
Sbjct: 7   VKSELRQFMKTLLGKISKEETQRQTEAVFEKIIESKWFQESKRLSVYVSTSG--EIQTDS 64

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI---SSIDDLIANSMNILEPAPV 139
           ++ + L++          K++++P+    ++ M M  +   ++ D+L +    I +P P 
Sbjct: 65  IIQKALEM---------GKEVFIPQFTKGSTAMDMVRVPDQTAFDNLPSTLWGIRQPEP- 114

Query: 140 DADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQP 199
                 +        P+DL L PG+AF   G R G G GYYD F   + +   E +   P
Sbjct: 115 ----KWKWQSYHETGPLDLILAPGVAFSPYGLRCGHGKGYYDRFFSTHHKHFPENS---P 167

Query: 200 LFVALSYSLQIMDEGIISATPKDMPVDALV 229
             + L+   QI+  G I  +  D+ +D ++
Sbjct: 168 KKIGLALREQII--GTIPISETDVELDEVI 195

Caenorhabditis elegans (taxid: 6239)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|P40099|FTHC_YEAST 5-formyltetrahydrofolate cyclo-ligase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAU1 PE=1 SV=1

 Score = 70.1 bits (170), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 61/224 (27%), Positives = 104/224 (46%), Gaps = 32/224 (14%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K++LR Q+++ + ++D  + + E + I + V       +S+R+  Y+S     EV T ++
Sbjct: 4   KQLLRRQIKRVINALDYDIIAAESHTISQAVRSLIASANSRRVACYMSMDK-GEVTTGEI 62

Query: 84  LSQILQIPNADGD-------TKTRKKLYVPRVEDKNSHM---RMFHISSIDDLIANS-MN 132
           +  + Q    DG        T T +  +    ED + H+   RM  +  + DL       
Sbjct: 63  IKNLFQ----DGQEVFLPRCTHTSESKHFKLREDHHPHLIFHRMSSLKMVRDLKPQGPYQ 118

Query: 133 ILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFD-RSGRRLGRGGGYYDTFLKKYQELA 191
           + EP P      E  D++      D+ L+PG+AFD ++G R+G G GYYD F ++Y+ L 
Sbjct: 119 LKEPEP----HIEESDIL------DVVLVPGVAFDIKTGARMGHGAGYYDDFFQRYKIL- 167

Query: 192 KERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
                ++PL V L    Q+     I     D  +D +V   G I
Sbjct: 168 --HEGQKPLLVGLCLMEQVASP--IPLEKHDYSMDCIVCGDGSI 207

Utilizes 5-formyltetrahydrofolate (folinic acid) as substrate in an alternative way of folate biosynthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 6

EC: .

EC: 3

EC: .

EC: 3

EC: .

EC: 2

>sp|Q8K9E3|Y396_BUCAP Uncharacterized protein BUsg_396 OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=BUsg_396 PE=3 SV=1

 Score = 63.5 bits (153), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 55/221 (24%), Positives = 104/221 (47%), Gaps = 42/221 (19%)

Query: 22  QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTS 81
           Q ++ +RS +R    S+  + +  E N I +         +++ +  ++S     E++T 
Sbjct: 7   QNRKEIRSYIRIVRNSVTLTKKYDESNKIVRTAFNCNIIYNAKNIACFLSFDG--EINTY 64

Query: 82  KLLSQILQIPNAD------GDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
            L+ + L + N +        + +RK  +VP           F   SI  L  N  NIL+
Sbjct: 65  PLILK-LWLNNKNVFLPIVSSSYSRKLFFVP-----------FTCKSI--LYYNQYNILQ 110

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
           P       N ++ +++++  +DL ++P +AFD  G RLG GGG+YD FLK         N
Sbjct: 111 PF-----YNMKDIILESD--LDLIIVPLVAFDCRGVRLGMGGGFYDQFLK---------N 154

Query: 196 WRQPLF--VALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
           W +  F  + ++Y  Q ++   I   P D+ +  +++P+ +
Sbjct: 155 WERKKFIPIGMAYDFQFVNY--IPRQPWDISLPIVLTPNKI 193

Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804)

>sp|P0AC28|YGFA_ECOLI Uncharacterized protein YgfA OS=Escherichia coli (strain K12) GN=ygfA PE=1 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 26/159 (16%)

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILE 135
           E+DT  L+ Q+          +  K++Y+P +   ++   +F +     +L+ N + I E
Sbjct: 46  ELDTQPLIEQLW---------RAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHE 96

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
           P  +D       DV+  +  +D+ + P +AFD  G+RLG GGG+YD  L+ +Q       
Sbjct: 97  PK-LDV-----RDVLPLSR-LDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKT--- 146

Query: 196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
             QP  V  ++  Q++++  +     D+P+ A+V+PS V
Sbjct: 147 --QP--VGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKV 179

Escherichia coli (strain K12) (taxid: 83333)

>sp|P0AC29|YGFA_ECO57 Uncharacterized protein YgfA OS=Escherichia coli O157:H7 GN=ygfA PE=3 SV=1

 Score = 55.1 bits (131), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 81/159 (50%), Gaps = 26/159 (16%)

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILE 135
           E+DT  L+ Q+          +  K++Y+P +   ++   +F +     +L+ N + I E
Sbjct: 46  ELDTQPLIEQLW---------RAGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHE 96

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
           P  +D       DV+  +  +D+ + P +AFD  G+RLG GGG+YD  L+ +Q       
Sbjct: 97  PK-LDV-----RDVLPLSR-LDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQHYKT--- 146

Query: 196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
             QP  V  ++  Q++++  +     D+P+ A+V+PS V
Sbjct: 147 --QP--VGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKV 179

Escherichia coli O157:H7 (taxid: 83334)

>sp|Q89AD6|Y370_BUCBP Uncharacterized protein bbp_370 OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=bbp_370 PE=3 SV=1

 Score = 55.1 bits (131), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/162 (27%), Positives = 75/162 (46%), Gaps = 21/162 (12%)

Query: 28  RSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQI 87
           R   RK  K ++  +R     +I K +       S + +   I CS   E+DT  L+ ++
Sbjct: 10  RKYFRKLRKKINNKIREQLAISISKKIFYCNILDSVKNIA--IFCSFDGEIDTYPLILKL 67

Query: 88  LQIPNADGDTKTRKKLYVPRVEDKNSHMRMF--HISSIDDLIANSMNILEPAPVDADGNE 145
                     +    +Y+P +      +  F  ++ +   LI N  NILEP        +
Sbjct: 68  ---------WRQNYNVYLPIINYNYKKILGFMKYLPN-TSLIKNRFNILEPVF------D 111

Query: 146 REDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKY 187
           R++ +Q+++ +D+  +P +AFD  G RLG GGG+YD  L  Y
Sbjct: 112 RKNFIQSDD-LDIMFVPLVAFDEFGYRLGMGGGFYDRILINY 152

Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
255540841	292	5-formyltetrahydrofolate cyclo-ligase, p	0.935	0.791	0.753	1e-101
449477615	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.967	0.709	0.781	3e-99
224121584	276	5-formyltetrahydrofolate cyclo-ligase [P	0.939	0.840	0.797	6e-99
449441041	337	PREDICTED: 5-formyltetrahydrofolate cycl	0.967	0.709	0.777	1e-98
359491756	273	PREDICTED: 5-formyltetrahydrofolate cycl	0.931	0.842	0.765	1e-95
297734059	242	unnamed protein product [Vitis vinifera]	0.923	0.942	0.771	1e-95
356508620	260	PREDICTED: 5-formyltetrahydrofolate cycl	0.955	0.907	0.757	1e-93
351720903	254	uncharacterized protein LOC100527426 [Gl	0.959	0.933	0.743	2e-92
217072924	241	unknown [Medicago truncatula]	0.919	0.941	0.745	1e-89
297811423	275	hypothetical protein ARALYDRAFT_488121 [	0.947	0.850	0.684	4e-85

>gi|255540841|ref|XP_002511485.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis] gi|223550600|gb|EEF52087.1| 5-formyltetrahydrofolate cyclo-ligase, putative [Ricinus communis]

 Score =  372 bits (955), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 174/231 (75%), Positives = 204/231 (88%)

Query: 11  EEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYI 70
           + +  + + IF+QKRILRS+VRK+LKSMDPSLRS EDNAIQ +VLEAPWFKSS+  CAYI
Sbjct: 41  QHQTANFDEIFKQKRILRSKVRKSLKSMDPSLRSEEDNAIQSLVLEAPWFKSSKTFCAYI 100

Query: 71  SCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANS 130
           SCSALREV+TS LL +IL+ P  DG  +T KKLYVPRVEDKNSHMRM +ISS+DDLIANS
Sbjct: 101 SCSALREVNTSVLLREILKNPEKDGCAQTPKKLYVPRVEDKNSHMRMLNISSMDDLIANS 160

Query: 131 MNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQEL 190
           MNILEPAP+D  GN+REDV+QAN+PVDLFLLPGLAF+R+G+RLGRGGGYYDTFL+KYQEL
Sbjct: 161 MNILEPAPIDGLGNKREDVLQANDPVDLFLLPGLAFERTGKRLGRGGGYYDTFLRKYQEL 220

Query: 191 AKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAA 241
           A+ERNW+QPLFV LSYSLQIMDEG+I  T  D+ VDALV+PSG+IPIS +A
Sbjct: 221 ARERNWKQPLFVGLSYSLQIMDEGVIPVTSHDVLVDALVTPSGMIPISPSA 271

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449477615|ref|XP_004155072.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  367 bits (941), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 190/243 (78%), Positives = 211/243 (86%), Gaps = 4/243 (1%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +K   K+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHSK---KIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTF 183
           DDLIANSMNILEPAPVD DGNEREDVMQ  +P+DLFLLPGLAFD+SGRRLGRGGGYYDTF
Sbjct: 214 DDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKSGRRLGRGGGYYDTF 273

Query: 184 LKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALD 243
           LKKYQELAK RNW+QPL VALSYS+QIMDEGII  TP D+ VDALVSPSGVIPIS+A LD
Sbjct: 274 LKKYQELAKARNWKQPLLVALSYSVQIMDEGIIPLTPNDVLVDALVSPSGVIPISSAGLD 333

Query: 244 RMQ 246
           +M+
Sbjct: 334 KMK 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224121584|ref|XP_002318620.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa] gi|222859293|gb|EEE96840.1| 5-formyltetrahydrofolate cyclo-ligase [Populus trichocarpa]

 Score =  366 bits (939), Expect = 6e-99,   Method: Compositional matrix adjust.
 Identities = 185/232 (79%), Positives = 209/232 (90%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L+ IF+QK++LRS+VRK+LKSMDPSLRS ED+AIQ +VLEAPWFKSSQRLCAYI+CSAL
Sbjct: 45  NLDGIFKQKQVLRSKVRKSLKSMDPSLRSQEDDAIQSLVLEAPWFKSSQRLCAYITCSAL 104

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLSQILQ P  DG  +  KKLYVPRVEDKNSHMRM +ISS+DDLIANSM+ILE
Sbjct: 105 REVDTSKLLSQILQNPTKDGSVENAKKLYVPRVEDKNSHMRMLNISSMDDLIANSMDILE 164

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
           PAPVD  GN REDVMQAN+PVDLFLLPGLAFD+SGRRLGRGGGYYDTFL+KYQELA+ER+
Sbjct: 165 PAPVDQHGNAREDVMQANDPVDLFLLPGLAFDKSGRRLGRGGGYYDTFLRKYQELAEERD 224

Query: 196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQF 247
           WRQPL VALSYSLQI+D+G I  T  D+PVD LVSP+GVIPIS AAL+RMQ 
Sbjct: 225 WRQPLLVALSYSLQIIDDGAIPVTLNDLPVDVLVSPAGVIPISQAALNRMQI 276

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449441041|ref|XP_004138292.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Cucumis sativus]

 Score =  365 bits (936), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 189/243 (77%), Positives = 210/243 (86%), Gaps = 4/243 (1%)

Query: 4   SNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSS 63
           +N+S  PE  E  L+ IF QKR+LRS VRK LK+MDPS RS EDN IQ IVLEAPWFKSS
Sbjct: 98  TNESIKPEN-EDQLKHIFDQKRVLRSSVRKALKAMDPSFRSQEDNVIQSIVLEAPWFKSS 156

Query: 64  QRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI 123
           QRLCAY+SCSALREVDTS+LLS+ILQ P  DG +K   K+YVPRVEDKNSHMRMF+IS +
Sbjct: 157 QRLCAYVSCSALREVDTSRLLSEILQHPPKDGHSK---KIYVPRVEDKNSHMRMFNISRM 213

Query: 124 DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTF 183
           DDLIANSMNILEPAPVD DGNEREDVMQ  +P+DLFLLPGLAFD+SGRRLGRGGGYYDTF
Sbjct: 214 DDLIANSMNILEPAPVDGDGNEREDVMQTKDPIDLFLLPGLAFDKSGRRLGRGGGYYDTF 273

Query: 184 LKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALD 243
           LK YQELAK RNW+QPL VALSYS+QIMDEGII  TP D+ VDALVSPSGVIPIS+A LD
Sbjct: 274 LKNYQELAKARNWKQPLLVALSYSVQIMDEGIIPLTPNDVLVDALVSPSGVIPISSAGLD 333

Query: 244 RMQ 246
           +M+
Sbjct: 334 KMK 336

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359491756|ref|XP_002266146.2| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase [Vitis vinifera]

 Score =  355 bits (911), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/230 (76%), Positives = 201/230 (87%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 44  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 103

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 104 EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 163

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNW 196
           APVD DGNEREDVMQA +PVDL LLPGLAFD+SGRRLGRGGGYYD FLK Y EL KERNW
Sbjct: 164 APVDGDGNEREDVMQATDPVDLLLLPGLAFDKSGRRLGRGGGYYDAFLKNYLELVKERNW 223

Query: 197 RQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQ 246
           +QPL VALSYS+QIMDEG+I  TP D+PVDALVSP+GVIPI+ AA +R  
Sbjct: 224 KQPLLVALSYSVQIMDEGVIPVTPNDVPVDALVSPAGVIPITTAAQERCH 273

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734059|emb|CBI15306.3| unnamed protein product [Vitis vinifera]

 Score =  355 bits (910), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 176/228 (77%), Positives = 201/228 (88%)

Query: 17  LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR 76
           LE++F+QK+ILRS VRK LK MDPS RS EDNA+Q I+LEAPWF+SSQRLCAYISCS+LR
Sbjct: 13  LEAVFKQKKILRSSVRKALKGMDPSSRSQEDNAVQNIILEAPWFRSSQRLCAYISCSSLR 72

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP 136
           EVDTSK+LS+ILQ P  DG T+  KKLYVPRVEDKNS+MRM +I+ +DDLI+NSMNILEP
Sbjct: 73  EVDTSKVLSEILQNPAKDGHTQMGKKLYVPRVEDKNSYMRMLNITHMDDLISNSMNILEP 132

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNW 196
           APVD DGNEREDVMQA +PVDL LLPGLAFD+SGRRLGRGGGYYD FLK Y EL KERNW
Sbjct: 133 APVDGDGNEREDVMQATDPVDLLLLPGLAFDKSGRRLGRGGGYYDAFLKNYLELVKERNW 192

Query: 197 RQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDR 244
           +QPL VALSYS+QIMDEG+I  TP D+PVDALVSP+GVIPI+ AA +R
Sbjct: 193 KQPLLVALSYSVQIMDEGVIPVTPNDVPVDALVSPAGVIPITTAAQER 240

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508620|ref|XP_003523053.1| PREDICTED: 5-formyltetrahydrofolate cyclo-ligase-like [Glycine max]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 184/243 (75%), Positives = 205/243 (84%), Gaps = 7/243 (2%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD L++IF+ KR+LR+QVRKTLKS+ PSLRSH+DN +Q IVL APWFKSS+R
Sbjct: 23  STNTNTPKHDGLDAIFKHKRLLRTQVRKTLKSIQPSLRSHQDNTVQDIVLGAPWFKSSRR 82

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNA-DGDTKTRKKLYVPRVEDKNSHMRMFHISSID 124
           LCAYISC+ALREVDT K+LSQILQ  NA DG     KKLYVPRVEDKNSHMRM HIS ID
Sbjct: 83  LCAYISCAALREVDTLKILSQILQHNNATDG-----KKLYVPRVEDKNSHMRMLHISGID 137

Query: 125 DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFL 184
           DLIANSM+ILEPAPVD DGN REDVMQAN+PVDLFLLPGLAFDRSGRRLGRG GYYDTFL
Sbjct: 138 DLIANSMDILEPAPVDVDGNAREDVMQANDPVDLFLLPGLAFDRSGRRLGRGRGYYDTFL 197

Query: 185 KKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDR 244
           K YQ+LAK RNW+QPL VALSYS QI+DEG+I  T  D+PVDALVSP GVIPIS  AL+ 
Sbjct: 198 KNYQDLAKTRNWKQPLLVALSYSEQILDEGLIPMTSSDLPVDALVSPEGVIPISKTALNS 257

Query: 245 MQF 247
           M  
Sbjct: 258 MDL 260

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351720903|ref|NP_001235912.1| uncharacterized protein LOC100527426 [Glycine max] gi|255632316|gb|ACU16516.1| unknown [Glycine max]

 Score =  344 bits (883), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 180/242 (74%), Positives = 203/242 (83%), Gaps = 5/242 (2%)

Query: 7   SSNPEEKEHD-LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQR 65
           S+N    +HD +++IF+QKR LR+QVRKTLKS+DPSL+SH+DN +Q IVL APWF+SS+R
Sbjct: 17  STNTNTPKHDDIDAIFKQKRFLRTQVRKTLKSIDPSLKSHQDNTVQDIVLGAPWFRSSRR 76

Query: 66  LCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD 125
           LCAYISC+ALREVDTSK+LSQILQ       T   KKLYVPRVEDKNSHMRM HIS IDD
Sbjct: 77  LCAYISCAALREVDTSKILSQILQ----HNSTTDGKKLYVPRVEDKNSHMRMLHISRIDD 132

Query: 126 LIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLK 185
           LIANSM+ILEP PVDADGN REDVMQAN+PVDLF LPGLAFDRSGRRLGRGGGYYDTFLK
Sbjct: 133 LIANSMDILEPTPVDADGNAREDVMQANDPVDLFPLPGLAFDRSGRRLGRGGGYYDTFLK 192

Query: 186 KYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRM 245
            YQ+LAK RNW+QPL VALSYS QI+DEG+I  T  D+PVDALVSP  VIPIS  AL+ M
Sbjct: 193 NYQDLAKTRNWKQPLLVALSYSEQILDEGVIPMTSSDLPVDALVSPESVIPISTTALNSM 252

Query: 246 QF 247
             
Sbjct: 253 DL 254

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072924|gb|ACJ84822.1| unknown [Medicago truncatula]

 Score =  335 bits (858), Expect = 1e-89,   Method: Compositional matrix adjust.
 Identities = 173/232 (74%), Positives = 200/232 (86%), Gaps = 5/232 (2%)

Query: 16  DLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSAL 75
           +L++IF+QK+ LR+QVRKTLK++DPSLRS +D AIQ I++ APWFKSS+ LCAYISCSAL
Sbjct: 15  ELDAIFKQKKALRTQVRKTLKAIDPSLRSQQDKAIQDIIVGAPWFKSSRGLCAYISCSAL 74

Query: 76  REVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILE 135
           REVDTSKLLS ILQ P A GD    KKLYVPRVEDKNSHMRM +IS IDDL+ANSMNILE
Sbjct: 75  REVDTSKLLSHILQPPPA-GD----KKLYVPRVEDKNSHMRMLNISRIDDLVANSMNILE 129

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
           P PVDADGN R+DV+QAN+PVD+ LLPGLAFD+SGRRLGRGGGYYDTFLK Y++LA+ RN
Sbjct: 130 PTPVDADGNARQDVLQANDPVDIMLLPGLAFDKSGRRLGRGGGYYDTFLKNYRDLAETRN 189

Query: 196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRMQF 247
           W QPL VALSYS QI+D+G+I  T  D+PVDALVSP GVIPIS+AA DRM  
Sbjct: 190 WTQPLLVALSYSQQILDDGVIPVTSTDIPVDALVSPEGVIPISSAAFDRMDL 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297811423|ref|XP_002873595.1| hypothetical protein ARALYDRAFT_488121 [Arabidopsis lyrata subsp. lyrata] gi|297319432|gb|EFH49854.1| hypothetical protein ARALYDRAFT_488121 [Arabidopsis lyrata subsp. lyrata]

 Score =  320 bits (820), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 163/238 (68%), Positives = 200/238 (84%), Gaps = 4/238 (1%)

Query: 8   SNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLC 67
           S   + + +L+SIF+QKR++RS VRK+LK+MDPSLR+ +D +IQK VLEAPWFKS +RLC
Sbjct: 42  STTSKSQEELDSIFKQKRVVRSTVRKSLKAMDPSLRTQQDESIQKTVLEAPWFKSCKRLC 101

Query: 68  AYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLI 127
           AYISC  L EVDTSK+LS+ILQ P    D+ T+KKLYVP VEDKNS+MRM HIS ++DLI
Sbjct: 102 AYISCKPLNEVDTSKILSEILQHP----DSNTQKKLYVPWVEDKNSNMRMLHISHMEDLI 157

Query: 128 ANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKY 187
           ANSMNILEPAPVDA GNEREDV QA+EP+DLF+LPGLAFDR GRRLGRGGGYYDTFLK+Y
Sbjct: 158 ANSMNILEPAPVDAQGNEREDVFQADEPIDLFILPGLAFDRCGRRLGRGGGYYDTFLKRY 217

Query: 188 QELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAALDRM 245
           Q+  KE++WR PL VALSYS QI+++G I  TP D+ +DALV+PSGV+PI+  A++ M
Sbjct: 218 QDRVKEKDWRYPLMVALSYSPQILEDGSIPVTPNDVLIDALVTPSGVVPITPRAIESM 275

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	247
TAIR|locus:2179827	277	5-FCL "5-formyltetrahydrofolat	0.959	0.855	0.636	8.7e-79
UNIPROTKB|F1NWN8	201	MTHFS "Uncharacterized protein	0.748	0.920	0.258	5.4e-15
FB|FBgn0085453	201	CG34424 [Drosophila melanogast	0.765	0.940	0.274	6.2e-14
POMBASE|SPBC1703.08c	204	SPBC1703.08c "5-formyltetrahyd	0.789	0.955	0.273	1.3e-13
RGD|1306876	203	Mthfs "5,10-methenyltetrahydro	0.744	0.906	0.253	1.5e-12
UNIPROTKB|P49914	203	MTHFS "5-formyltetrahydrofolat	0.761	0.926	0.246	2.4e-12
UNIPROTKB|P80405	201	MTHFS "5-formyltetrahydrofolat	0.744	0.915	0.253	2.4e-12
MGI|MGI:1340032	203	Mthfs "5, 10-methenyltetrahydr	0.744	0.906	0.253	3.1e-12
UNIPROTKB|E2RR20	203	MTHFS "Uncharacterized protein	0.765	0.931	0.238	1.3e-11
SGD|S000000985	211	FAU1 "5,10-methenyltetrahydrof	0.793	0.928	0.245	2.1e-08

TAIR|locus:2179827 5-FCL "5-formyltetrahydrofolate cycloligase" [Arabidopsis thaliana (taxid:3702)]

 Score = 792 (283.9 bits), Expect = 8.7e-79, P = 8.7e-79
 Identities = 156/245 (63%), Positives = 193/245 (78%)

Query:     1 MSQSNDSSNPEEKEHDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWF 60
             ++ S  S N EE    L+SIF+QKR++RS VRK+LK+MDPSLR+ +D AIQK VLEAPWF
Sbjct:    41 VAMSTTSKNQEE----LDSIFKQKRVVRSTVRKSLKAMDPSLRTQQDEAIQKTVLEAPWF 96

Query:    61 KSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHI 120
             KS + LCAYISC +L EVDTSK+LS+ILQ P    D+ T+KKLYVP VEDKNS+MRM HI
Sbjct:    97 KSCKGLCAYISCKSLNEVDTSKILSEILQHP----DSNTQKKLYVPWVEDKNSNMRMLHI 152

Query:   121 SSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYY 180
             S ++DL+ANSMNILEPAPVDA GN+REDV+QA+EP+DLF+LPGLAFD           YY
Sbjct:   153 SHMEDLVANSMNILEPAPVDAQGNDREDVLQADEPIDLFILPGLAFDRCGRRLGRGGGYY 212

Query:   181 DTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAA 240
             DTFLK+YQ+ AKE+ WR PL VALSYS QI+++G I  TP D+ +DALV+PSGV+PI+  
Sbjct:   213 DTFLKRYQDRAKEKGWRYPLMVALSYSPQILEDGSIPVTPNDVLIDALVTPSGVVPITPR 272

Query:   241 ALDRM 245
             A + M
Sbjct:   273 ATESM 277

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;IGI;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0046653 "tetrahydrofolate metabolic process" evidence=IMP

UNIPROTKB|F1NWN8 MTHFS "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 190 (71.9 bits), Expect = 5.4e-15, P = 5.4e-15
 Identities = 54/209 (25%), Positives = 104/209 (49%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++R+ L+++  + +  +   + + V+    ++ S+R+  ++S     E+ T ++
Sbjct:    10 KRALRTELRQKLRALGAAEKQRQSRLLSRKVIGHSKYQESKRIAIFLSMPD--EIQTEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
             +  I          K  K+ ++PR +  ++HM M  +SS +D   L   S NIL+P+   
Sbjct:    68 IKDIF---------KQGKECFIPRYKPHSNHMDMLKLSSAEDISSLTLTSWNILQPSD-- 116

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPL 200
              D + RE+ + A   +DL  +PGL FD           YYDT+L +  +    +    P 
Sbjct:   117 -DDSAREEAL-AGGGLDLIFMPGLGFDKKGNRLGRGKGYYDTYLGRCMKHPSGK----PY 170

Query:   201 FVALSYSLQIMDEGIISATPKDMPVDALV 229
              +AL++  QI +   +  T  D+ VD ++
Sbjct:   171 TIALAFREQICES--VPVTENDVQVDEIL 197

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

FB|FBgn0085453 CG34424 [Drosophila melanogaster (taxid:7227)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 57/208 (27%), Positives = 103/208 (49%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             K  LR +++  LK +D    + +  A+   VL++  F+ +QR+  Y+S ++  E+DT+ L
Sbjct:    10 KVALRKRMKDALKGIDAEAIARQSQAVTAKVLQSEIFRQAQRVSIYLSTAS--ELDTTAL 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHM-RMFHISSIDDLIANSMNILEPAPVDAD 142
             LS++ ++          K ++VP  E     M R+  +   + L     NI +P   +A 
Sbjct:    68 LSEMFRL---------EKMVFVPTYEGSRMKMVRLRGMEEYESLPLTKWNIKQPDFKEA- 117

Query:   143 GNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLFV 202
                RED M     +DLF++PG+AF            YYD FLK++ E  K  + +  L +
Sbjct:   118 ---REDAMTNGHGIDLFIVPGVAFTRCGARMGHGMGYYDKFLKQHAE--KYPHKKISL-M 171

Query:   203 ALSYSLQIMDEGIISATPKDMPVDALVS 230
             ALS + QI+    +     D+ + ++++
Sbjct:   172 ALSLNEQIVSNEELPMESHDVRLHSVIT 199

GO:0005524 "ATP binding" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005829 "cytosol" evidence=ISS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

POMBASE|SPBC1703.08c SPBC1703.08c "5-formyltetrahydrofolate cyclo-ligase (predicted)" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 177 (67.4 bits), Expect = 1.3e-13, P = 1.3e-13
 Identities = 59/216 (27%), Positives = 99/216 (45%)

Query:    23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSK 82
             +K  LR+ +  +L  +   +   +  +I K V+E P +K  + +C Y++    +EV T  
Sbjct:     4 KKNQLRAILNSSLGKLADHIIDSQSISICKQVVELPEWKRCKNVCLYMNMPK-KEVRTRC 62

Query:    83 LLSQILQIPNADGDTKTRKKLYVPRVEDKNSH-MRMFHI-SSIDDLIANSMNILEPAPVD 140
             L+         D   K  K +++P+     SH M M+ +    + L  N   I EP    
Sbjct:    63 LI---------DVAFKEGKNVFIPKCI--GSHVMEMYQVFEKTESLTINKWGIAEP---- 107

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPL 200
              +G  R+ +M      +L ++PG+AFD           YYD ++ KYQ  A ++  R  +
Sbjct:   108 -NGESRK-IMDDETDCELIIVPGVAFDEKLSRLGHGKGYYDNYISKYQSWALQKESRANM 165

Query:   201 F-VALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
             F V +    QI+    I    +D  +DALV+P  VI
Sbjct:   166 FKVGICLKEQILPNREIPMDTRDQKLDALVTPEKVI 201

GO:0005524 "ATP binding" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISS;IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=ISS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

RGD|1306876 Mthfs "5,10-methenyltetrahydrofolate synthetase (5-formyltetrahydrofolate cyclo-ligase)" [Rattus norvegicus (taxid:10116)]

 Score = 167 (63.8 bits), Expect = 1.5e-12, P = 1.5e-12
 Identities = 53/209 (25%), Positives = 104/209 (49%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  + + + + V+    +++S+R+  ++S     E++T ++
Sbjct:    10 KRGLRAELKQRLRALGAEERLRQSHLLTQKVIAHSQYQNSKRISIFLSMQD--EIETEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNILEPAPVD 140
             +  I          K  K  ++PR +  ++HM M  +++ ++   L   S NI +P    
Sbjct:    68 IKDIF---------KQGKICFIPRYQFHSNHMDMVRLTAPEEVALLPKTSWNIHQPG--- 115

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPL 200
              +G+ RE+ +     +DL  LPGL FD           YYDT+LK+  +  K +    P 
Sbjct:   116 -EGDVREEALSTGG-LDLIFLPGLGFDKDGNRLGRGKGYYDTYLKRCVQHQKVK----PY 169

Query:   201 FVALSYSLQIMDEGIISATPKDMPVDALV 229
              +AL++  QI  +  I     DM VD ++
Sbjct:   170 TLALAFREQICPQ--IPVDEHDMKVDEVL 196

GO:0003674 "molecular_function" evidence=ND

GO:0005524 "ATP binding" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0005737 "cytoplasm" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO

GO:0005794 "Golgi apparatus" evidence=ISO

GO:0005886 "plasma membrane" evidence=ISO

GO:0008150 "biological_process" evidence=ND

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

UNIPROTKB|P49914 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Homo sapiens (taxid:9606)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 53/215 (24%), Positives = 103/215 (47%)

Query:    19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREV 78
             ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E+
Sbjct:     5 AVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EI 62

Query:    79 DTSKLLSQILQIPNADGDTKTRKKL-YVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
             +T +++  I Q          R K+ ++PR   +++HM M  I S ++   L   S NI 
Sbjct:    63 ETEEIIKDIFQ----------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query:   135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKER 194
             +P     +G+ RE+ +     +DL  +PGL FD           YYD +LK+  +  + +
Sbjct:   113 QPG----EGDVREEALSTGG-LDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEVK 167

Query:   195 NWRQPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
                 P  +AL++  QI  +  +     DM VD ++
Sbjct:   168 ----PYTLALAFKEQICLQ--VPVNENDMKVDEVL 196

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0015942 "formate metabolic process" evidence=NAS

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IDA;NAS

GO:0005829 "cytosol" evidence=NAS

GO:0046653 "tetrahydrofolate metabolic process" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|P80405 MTHFS "5-formyltetrahydrofolate cyclo-ligase" [Oryctolagus cuniculus (taxid:9986)]

 Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
 Identities = 53/209 (25%), Positives = 104/209 (49%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R      + + V+    ++ SQR+  ++S     E++T ++
Sbjct:    10 KRSLRAELKQRLRAISAEERLRCQRLLTQKVIAHRQYQKSQRISIFLSMPD--EIETEEI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I Q     G     K  ++PR   +++HM M  ++S D++ +    S NI +P+  D
Sbjct:    68 IKDIFQ----QG-----KVCFIPRYRLQSNHMDMVKLASADEISSLPKTSWNIHQPSESD 118

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPL 200
                  RE+ + A   +DL  +PGL FD           YYDT+L++      ++   +P 
Sbjct:   119 T----REEAL-ATGGLDLIFMPGLGFDRNGNRLGRGRGYYDTYLQR----CLQQQGAKPY 169

Query:   201 FVALSYSLQIMDEGIISATPKDMPVDALV 229
              +AL++  QI  +  +  T  D+ VD ++
Sbjct:   170 TIALAFREQICPQVPVDDT--DVSVDEVL 196

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISS

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISS

MGI|MGI:1340032 Mthfs "5, 10-methenyltetrahydrofolate synthetase" [Mus musculus (taxid:10090)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 53/209 (25%), Positives = 103/209 (49%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             KR LR+++++ L+++    R  +   + + V+    +++S+R+  ++S     EV+T  +
Sbjct:    10 KRGLRAELKQRLRALSAEERLRQSLLLTQKVIAHNQYQNSKRISIFLSMQD--EVETEVI 67

Query:    84 LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIA---NSMNILEPAPVD 140
             +  I          K  K  ++PR + +++HM M  ++S +++      S NI +P    
Sbjct:    68 IKDIF---------KQGKICFIPRYQFQSNHMDMVRLTSSEEIALLPKTSWNIHQPG--- 115

Query:   141 ADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPL 200
              +G+ RE+ +     +DL  LPGL FD           YYDT+LK+  +  + +    P 
Sbjct:   116 -EGDVREEALSTGG-LDLIFLPGLGFDKDGNRLGRGKGYYDTYLKRCVQHQEVK----PY 169

Query:   201 FVALSYSLQIMDEGIISATPKDMPVDALV 229
              +AL++  QI  +  I     DM VD ++
Sbjct:   170 TMALAFKEQICPQ--IPVDEHDMKVDEVL 196

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005542 "folic acid binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=ISO

GO:0046653 "tetrahydrofolate metabolic process" evidence=ISO

UNIPROTKB|E2RR20 MTHFS "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 51/214 (23%), Positives = 101/214 (47%)

Query:    19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREV 78
             ++   KR LR+++++ L++M    R  +   + + V+    ++ S+R+  ++S     E+
Sbjct:     6 AVSSAKRSLRAELKQRLRAMSAEERLRQSRLLAQKVIAHSQYQKSKRISIFLSMHD--EI 63

Query:    79 DTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILE 135
             +T +++  I Q     G T      ++PR + +++HM M  ++S   I  L   S NI +
Sbjct:    64 ETEEIIRDIFQ----QGKT-----CFIPRYQFRSNHMDMVKLASPEEISSLPKTSWNIHQ 114

Query:   136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERN 195
             P     +   RE+ +     +DL  +PGL FD           YYD +L++      ++ 
Sbjct:   115 PG----EDEVREEALSTGG-LDLIFMPGLGFDKHGNRLGRGRGYYDAYLRR----CLQQQ 165

Query:   196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
                P  +AL++  QI  +  +     DM VD ++
Sbjct:   166 DVPPYTMALAFREQICPQ--VPVDENDMKVDEVL 197

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

SGD|S000000985 FAU1 "5,10-methenyltetrahydrofolate synthetase" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 141 (54.7 bits), Expect = 2.1e-08, P = 2.1e-08
 Identities = 54/220 (24%), Positives = 100/220 (45%)

Query:    24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
             K++LR Q+++ + ++D  + + E + I + V       +S+R+  Y+S     EV T ++
Sbjct:     4 KQLLRRQIKRVINALDYDIIAAESHTISQAVRSLIASANSRRVACYMSMDK-GEVTTGEI 62

Query:    84 LSQILQ------IPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEP- 136
             +  + Q      +P     T T +  +    ED + H+ +FH  S   ++ +    L+P 
Sbjct:    63 IKNLFQDGQEVFLPRC---THTSESKHFKLREDHHPHL-IFHRMSSLKMVRD----LKPQ 114

Query:   137 APVDADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXX-YYDTFLKKYQELAKERN 195
              P      E E  ++ ++ +D+ L+PG+AFD            YYD F ++Y+ L     
Sbjct:   115 GPYQL--KEPEPHIEESDILDVVLVPGVAFDIKTGARMGHGAGYYDDFFQRYKIL---HE 169

Query:   196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
              ++PL V L    Q+     I     D  +D +V   G I
Sbjct:   170 GQKPLLVGLCLMEQVASP--IPLEKHDYSMDCIVCGDGSI 207

GO:0005739 "mitochondrion" evidence=IEA;IDA

GO:0030272 "5-formyltetrahydrofolate cyclo-ligase activity" evidence=IEA;IDA

GO:0009396 "folic acid-containing compound biosynthetic process" evidence=IEA;IDA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0016874 "ligase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.3	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	5FCL	5-formyltetrahydrofolate cyclo-ligase (237 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	GART	hypothetical protein (215 aa)						•	•		0.915
	gw1.V.378.1	hypothetical protein (318 aa)						•			0.800
	NIT2	nitrilase 2 (EC-3.5.5.1) (266 aa)							•		0.700

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	247
PLN02812	211	PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo	1e-124
TIGR02727	179	TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofola	8e-37
COG0212	191	COG0212, COG0212, 5-formyltetrahydrofolate cyclo-l	5e-35
pfam01812	182	pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolat	8e-34
PRK10333	182	PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo	4e-10

>gnl|CDD|178408 PLN02812, PLN02812, 5-formyltetrahydrofolate cyclo-ligase

 Score =  350 bits (899), Expect = e-124
 Identities = 150/219 (68%), Positives = 177/219 (80%), Gaps = 9/219 (4%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
           + I +QK+ LR +VR+ LK++ P  R+ ED AIQ  +LE PWFKSS+RLCAY+SC+ LRE
Sbjct: 1   DEIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLRE 60

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEP 136
           VDTSK+LS+ILQ P         K+LYVPRVEDKNS+MRM HI+ + DDL+ANSMNILEP
Sbjct: 61  VDTSKILSEILQNP--------DKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEP 112

Query: 137 APVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNW 196
            PVDADGN REDV+QA EP+DL LLPGLAFDRSGRRLGRGGGYYDTFL KYQELAKE+ W
Sbjct: 113 TPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRGGGYYDTFLSKYQELAKEKGW 172

Query: 197 RQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
           +QPL VALSYS QI+DEG +     D+ VDALV+PSGVI
Sbjct: 173 KQPLLVALSYSPQILDEGSVPVDETDVLVDALVTPSGVI 211

Length = 211

>gnl|CDD|233985 TIGR02727, MTHFS_bact, 5,10-methenyltetrahydrofolate synthetase

 Score =  127 bits (321), Expect = 8e-37
 Identities = 64/210 (30%), Positives = 106/210 (50%), Gaps = 33/210 (15%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALR-EVDTSK 82
           K+ LR ++ +  K++  + R    +AI K +L    +K+++ +  Y+    LR EVDT  
Sbjct: 1   KKELRKKLLEARKALSSAERKAASSAIAKRLLALIEWKNAKTIALYLP---LRGEVDTRP 57

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-LIANSMNILEPAPVDA 141
           L+ Q+L+           K++ +P+V+     M  F I S +  L      ILEP     
Sbjct: 58  LIEQLLKEG---------KRVALPKVDGDGKEMLFFRIWSPEQPLTKGPFGILEP---VG 105

Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLF 201
           D  E     +    +DL ++PG+AFDR G RLG GGGYYD FL +           + + 
Sbjct: 106 DLEEPVPPDE----IDLIIVPGVAFDRRGYRLGYGGGYYDRFLARL----------KGIT 151

Query: 202 VALSYSLQIMDEGIISATPKDMPVDALVSP 231
           + L++  Q++DE  +   P D+PVDA+++ 
Sbjct: 152 IGLAFDFQLVDE--LPREPHDVPVDAIITE 179

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism [Central intermediary metabolism, One-carbon metabolism]. Length = 179

>gnl|CDD|223290 COG0212, COG0212, 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

 Score =  123 bits (311), Expect = 5e-35
 Identities = 60/212 (28%), Positives = 95/212 (44%), Gaps = 28/212 (13%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR  + +   ++ P  R   D  I K++      K ++ +  Y+  +   E+DT  L
Sbjct: 5   KSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPL 62

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           + Q L+     G     K+L +P++ D       +    +  LI N   ILEP       
Sbjct: 63  IRQALR----RG-----KRLLLPKLRDYKLLFLRYIPDPLQPLIKNRFGILEP------- 106

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
                       +DL L+P +AFD+ G RLG GGGYYD +L   +        R+   V 
Sbjct: 107 -GEYGRKIPPPEIDLVLVPLVAFDKQGYRLGYGGGYYDRYLANLR-------GRKTPTVG 158

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
           ++Y  Q++D       P D+P+DA+V+  GVI
Sbjct: 159 IAYDCQLVDHLPRE--PHDVPLDAIVTEEGVI 188

Length = 191

>gnl|CDD|216717 pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family

 Score =  120 bits (302), Expect = 8e-34
 Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 28/209 (13%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K+ LR Q+    +++    R+    A+ + +      + ++R+  Y+S     E+DT +L
Sbjct: 1   KQELRKQLLAKRRALSEEERAAASRALHQKLPSFVGAQKAKRVALYVSVK--GEIDTREL 58

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHIS-SIDDLIANSMNILEPAPVDAD 142
           +  +L+           K + +PR    +  +           L +    + EP     +
Sbjct: 59  IELLLEE---------GKLVLLPRPRPDSGLVVRITPYYPETGLPSGPYGLPEPI----E 105

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFV 202
             +RE    A   +DL L+PG+AFDR G RLGRGGGYYD +L + Q          PL V
Sbjct: 106 EEQREL---ALNQIDLVLVPGVAFDRQGYRLGRGGGYYDRYLARLQ-------GHGPLTV 155

Query: 203 ALSYSLQIMDEGIISATPKDMPVDALVSP 231
            L+Y  Q+++   +   P D+PVD +V+ 
Sbjct: 156 GLAYDEQLVER--LPQEPHDVPVDEIVTE 182

5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase EC:6.3.3.2 catalyzes the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin. Length = 182

>gnl|CDD|182385 PRK10333, PRK10333, 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

 Score = 57.2 bits (138), Expect = 4e-10
 Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 26/159 (16%)

Query: 77  EVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMF-HISSIDDLIANSMNILE 135
           E+DT  L+ Q+ +           K++Y+P +   ++   +F +     +L+ N + I E
Sbjct: 46  ELDTQPLIEQLWR---------AGKRVYLPVLHPFSAGNLLFLNYHPQSELVMNRLKIHE 96

Query: 136 PAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERN 195
           P  +D       DV+  +  +D+ + P +AFD  G+RLG GGG+YD  L+         N
Sbjct: 97  PK-LDV-----RDVLPLSR-LDVLITPLVAFDEYGQRLGMGGGFYDRTLQ---------N 140

Query: 196 WRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
           W+      + Y+        +     D+P+ A+V+PS V
Sbjct: 141 WQHYKTQPVGYAHDCQLVEKLPVEEWDIPLPAVVTPSKV 179

Length = 182

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	247
PLN02812	211	5-formyltetrahydrofolate cyclo-ligase	100.0
PRK10333	182	5-formyltetrahydrofolate cyclo-ligase family prote	100.0
PF01812	186	5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-lig	100.0
TIGR02727	181	MTHFS_bact 5,10-methenyltetrahydrofolate synthetas	100.0
KOG3093	200	consensus 5-formyltetrahydrofolate cyclo-ligase [C	100.0
COG0212	191	5-formyltetrahydrofolate cyclo-ligase [Coenzyme me	100.0
KOG4410	396	consensus 5-formyltetrahydrofolate cyclo-ligase [C	99.68

>PLN02812 5-formyltetrahydrofolate cyclo-ligase

Probab=100.00  E-value=3.2e-56  Score=382.33  Aligned_cols=206  Identities=71%  Similarity=1.158  Sum_probs=171.5

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 025859           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK   98 (247)
Q Consensus        19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~   98 (247)
                      .+.+.|++||++++++|++++++++...|.+|+++|.+++.|+++++|++|+|+++.+||||.+|++.+++         
T Consensus         2 ~~~~~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~~~---------   72 (211)
T PLN02812          2 EIREQKKALRKEVRRALKALSPEQRAQEDAAIQSRLLELPWFKSSKRLCAYVSCAKLREVDTSKILSEILQ---------   72 (211)
T ss_pred             hHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHcChhhHhcCEEEEEEECCCCCCcCHHHHHHHHHH---------
Confidence            35678999999999999999999999999999999999999999999999999982139999999999998         


Q ss_pred             CC-cEEEEeeEeCCCCceEEEEccCC-cccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccC
Q 025859           99 TR-KKLYVPRVEDKNSHMRMFHISSI-DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRG  176 (247)
Q Consensus        99 ~g-k~v~lP~~~~~~~~m~f~~~~~~-~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~G  176 (247)
                      .| |+|+||+|...+..|.|+.|.+. ++|..|.|||+||.........+.+.+.....+|||||||||||++|+|||||
T Consensus        73 ~g~k~v~lP~~~~~~~~m~f~~~~~~~~~l~~~~~gI~EP~~~~~~~~~~~~~~~~~~~iDliiVP~lafD~~G~RLG~G  152 (211)
T PLN02812         73 NPDKRLYVPRVEDKNSNMRMLHITDMADDLVANSMNILEPTPVDADGNPREDVLQAPEPLDLLLLPGLAFDRSGRRLGRG  152 (211)
T ss_pred             cCCcEEEEeEEecCCCeEEEEEeCCccccccCCCCCccCCCccccccccccccccCCCCCCEEEeCceEECCCCCcCcCC
Confidence            89 99999999865456999999986 78999999999997532111000001112467899999999999999999999


Q ss_pred             CchHhhhhhhhhhHHhhhccCCccEEEEeecccccc--CCCCCCCCCCccCCEEEeCCcEE
Q 025859          177 GGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMD--EGIISATPKDMPVDALVSPSGVI  235 (247)
Q Consensus       177 gGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d--~~~lP~e~hDi~ld~iiTe~~ii  235 (247)
                      ||||||||+.++......++..+.+|||||++|+++  +  ||+|+||++||+||||+|+|
T Consensus       153 gGyYDR~L~~~~~~~~~~~~~~~~~igla~~~Q~~~~~~--iP~e~hD~~ld~iiTe~~vi  211 (211)
T PLN02812        153 GGYYDTFLSKYQELAKEKGWKQPLLVALSYSPQILDEGS--VPVDETDVLVDALVTPSGVI  211 (211)
T ss_pred             CchHHHHHHHhhhhhccccCCCceEEEEeeheeeECCCC--CCCccccccCCEEEcCCcCC
Confidence            999999999875210001122466899999999999  8  99999999999999999974

>PRK10333 5-formyltetrahydrofolate cyclo-ligase family protein; Provisional

Probab=100.00  E-value=2.2e-54  Score=363.12  Aligned_cols=180  Identities=24%  Similarity=0.453  Sum_probs=160.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEEEEeeEeC
Q 025859           31 VRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVED  110 (247)
Q Consensus        31 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v~lP~~~~  110 (247)
                      ++++|++++++++...|++|+++|.+++.|+++++|++|+|++  +||||.+|++.+++         .||+|+||+|.+
T Consensus         2 ~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~gk~v~lP~v~~   70 (182)
T PRK10333          2 IRQRRRALTPEQQQEMGQQAATRMMTYPPVVMAHTVAVFLSFD--GELDTQPLIEQLWR---------AGKRVYLPVLHP   70 (182)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEEEEeEEec
Confidence            5788999999999999999999999999999999999999998  79999999999998         899999999975


Q ss_pred             C-CCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhhhhhhhhh
Q 025859          111 K-NSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQE  189 (247)
Q Consensus       111 ~-~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR~L~~~~~  189 (247)
                      . ...|.|+.|.+.++|++|+|||+||.....      . ......+|+|||||||||++|+|||||||||||||+.++.
T Consensus        71 ~~~~~m~f~~~~~~~~l~~~~~gI~EP~~~~~------~-~~~~~~iDlviVP~laFD~~G~RLG~GgGyYDR~L~~~~~  143 (182)
T PRK10333         71 FSAGNLLFLNYHPQSELVMNRLKIHEPKLDVR------D-VLPLSRLDVLITPLVAFDEYGQRLGMGGGFYDRTLQNWQH  143 (182)
T ss_pred             CCCCEEEEEECCCCCccccCCCCCCCCCcccc------c-cCCcccCCEEEeCceEECCCCCcccCCcchHHHHHHHhcc
Confidence            4 246999999998999999999999975311      0 1234678999999999999999999999999999998753


Q ss_pred             HHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEc
Q 025859          190 LAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPI  237 (247)
Q Consensus       190 ~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~  237 (247)
                             ..+.+||+||++|++++  ||+|+||++||+||||++++++
T Consensus       144 -------~~~~~igla~~~Q~~~~--ip~e~hD~~ld~iiTe~~~~~~  182 (182)
T PRK10333        144 -------YKTQPVGYAHDCQLVEK--LPVEEWDIPLPAVVTPSKVWEW  182 (182)
T ss_pred             -------cCCcEEEEeeeeEEeCC--cCCCcccCcCCEEEeCCeEEeC
Confidence                   13468999999999999  9999999999999999999874

>PF01812 5-FTHF_cyc-lig: 5-formyltetrahydrofolate cyclo-ligase family; InterPro: IPR002698 5-formyltetrahydrofolate cyclo-ligase or methenyl-THF synthetase 6

Probab=100.00  E-value=1.7e-53  Score=358.25  Aligned_cols=183  Identities=36%  Similarity=0.664  Sum_probs=144.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (247)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v  103 (247)
                      |++||++++++|++|+++++...|..|+++|.+++.+++|++|++|+|++  +|+||.+|++.+++         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Ev~t~~li~~~~~---------~gk~v   69 (186)
T PF01812_consen    1 KKELRKEIRARRRALSPEERAEASQAICERLLALPEYRKAQTIALYLPMG--GEVDTRPLIERALK---------DGKRV   69 (186)
T ss_dssp             HHHHHHHHHHHHHTS-HHHHHHHHHHHHHHHHCCHHHHCTSEEEE----T--TS---HHHHHHHHH---------TTCEE
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhhhceEEEccCCC--CCCCHHHHHHHHHH---------cCCeE
Confidence            89999999999999999999999999999999999999999999999998  79999999999999         89999


Q ss_pred             EEeeEeCCC---CceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchH
Q 025859          104 YVPRVEDKN---SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYY  180 (247)
Q Consensus       104 ~lP~~~~~~---~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyY  180 (247)
                      ++|++....   ..|.|+.+...++|.+|.|||+||.....       .......+|+|||||||||++|+|||||||||
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~gI~EP~~~~~-------~~~~~~~idlvlVP~lafd~~G~RLG~GgGyY  142 (186)
T PF01812_consen   70 YLPRVHPDDGRMRMMEFRRYDSDDPLEKGRFGIPEPDGESP-------PPDPPEEIDLVLVPGLAFDRNGNRLGYGGGYY  142 (186)
T ss_dssp             EEEEEETTCTEECEEEEEEESSCGCCEECETTCEEEESTCS-------EEGGGGG-SEEEEE-SEEETTSBEE-SSSTHH
T ss_pred             ecceecccccccceeEEeecCCcccccccccCccCCccccc-------cccccccCCEEEeCcEEECCCCCeEecCCCHH
Confidence            999998865   24677888888999999999999976421       11112378999999999999999999999999


Q ss_pred             hhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeC
Q 025859          181 DTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSP  231 (247)
Q Consensus       181 DR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe  231 (247)
                      ||||+.++.     ....+.+|||||++|+++.  ||+|+||++||+||||
T Consensus       143 DR~L~~~~~-----~~~~~~~igl~~~~q~~~~--iP~e~hD~~ld~iiTe  186 (186)
T PF01812_consen  143 DRFLARLPP-----GRKKPLKIGLAFDFQIVDD--IPVEPHDIPLDAIITE  186 (186)
T ss_dssp             HHHHHHHTS------SS--EEEEEE-GGGEES-------TTS-B-SEEEET
T ss_pred             HhHHHhhhc-----ccCCCeEEEEeehhheeCC--CCCCcccccCCEEEcC
Confidence            999999864     1235789999999999998  9999999999999998

3.3.2 from EC catalyses the interchange of 5-formyltetrahydrofolate (5-FTHF) to 5-10-methenyltetrahydrofolate, this requires ATP and Mg2+ []. 5-FTHF is used in chemotherapy where it is clinically known as Leucovorin [].; GO: 0005524 ATP binding, 0030272 5-formyltetrahydrofolate cyclo-ligase activity, 0009396 folic acid-containing compound biosynthetic process; PDB: 1WKC_A 1SBQ_A 1U3G_A 1U3F_B 1YDM_B 1SOU_A 2JCB_B 3HY6_A 3HY4_A 3HXT_A ....

>TIGR02727 MTHFS_bact 5,10-methenyltetrahydrofolate synthetase

Probab=100.00  E-value=3e-52  Score=349.76  Aligned_cols=180  Identities=33%  Similarity=0.589  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (247)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v  103 (247)
                      |++||++++++|++++.+++..++.+|+++|.+++.++++++|++|+|++  +|+||.+|++.+++         .||+|
T Consensus         1 K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~l~~~~~~~~~~~I~~Y~~~~--~E~~t~~li~~~~~---------~~k~v   69 (181)
T TIGR02727         1 KKELRKKLLERRKALSSEERKAASEAIAKRLLALIEWKNAKTIALYLPLR--GEVDTRPLIEQLLK---------EGKRV   69 (181)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH---------CCCEE
Confidence            68999999999999999999999999999999999999999999999998  79999999999998         89999


Q ss_pred             EEeeEeCCC-CceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhh
Q 025859          104 YVPRVEDKN-SHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDT  182 (247)
Q Consensus       104 ~lP~~~~~~-~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR  182 (247)
                      +||++...+ ..|.|..|...++|..|+|||+||.....      . ......+|+|||||||||++|+|||||||||||
T Consensus        70 ~lP~~~~~~~~~~~~~~~~~~~~l~~~~~gi~eP~~~~~------~-~~~~~~idlvivP~lafD~~G~RLG~GgGyYDR  142 (181)
T TIGR02727        70 ALPKVDPDGKEMLFFRIWSPSDLLTKGKFGILEPPGDST------E-PVDPDEIDLIIVPGVAFDRRGYRLGYGGGYYDR  142 (181)
T ss_pred             EEEEEecCCCceeEEEecCCCCccccCCCCCCCCCCccc------C-cCCcccCCEEEeCceEEcCCCccccCCcchHHH
Confidence            999997654 23566677766689999999999974310      0 123567899999999999999999999999999


Q ss_pred             hhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeC
Q 025859          183 FLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSP  231 (247)
Q Consensus       183 ~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe  231 (247)
                      ||+.++.        .+.+|||||++|+++.  +|+|+||++||+||||
T Consensus       143 ~L~~~~~--------~~~~igv~~~~q~~~~--lp~e~~Di~ld~iiTe  181 (181)
T TIGR02727       143 FLANLKG--------KTVVVGLAFDFQLVDE--LPREPHDVPVDAIITE  181 (181)
T ss_pred             HHHhccc--------CCCEEEEEecceeeCc--cCCCccCccCCEEeCC
Confidence            9998752        2448999999999999  9999999999999997

This enzyme, 5,10-methenyltetrahydrofolate synthetase, is also called 5-formyltetrahydrofolate cycloligase. Function of bacterial proteins in this family was inferred originally from the known activity of eukaryotic homologs. Recently, activity was shown explicitly for the member from Mycoplasma pneumonia. Members of this family from alpha- and gamma-proteobacteria, designated ygfA, are often found in an operon with 6S structural RNA, and show a similar pattern of high expression during stationary phase. The function may be to deplete folate to slow 1-carbon biosynthetic metabolism.

>KOG3093 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]

Probab=100.00  E-value=2.4e-51  Score=335.64  Aligned_cols=196  Identities=40%  Similarity=0.735  Sum_probs=176.1

Q ss_pred             hhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCC
Q 025859           18 ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDT   97 (247)
Q Consensus        18 ~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~   97 (247)
                      +.+...|+.||+.++..+++|+++.+.++|.+|++.++++++|+++++|++|+||++ +||+|..||+.+++        
T Consensus         2 ~~i~~~K~~LR~~lk~~L~ald~e~i~rQs~ai~~kV~e~~~fk~skrvs~YmSm~~-~Ev~T~~Ii~~~fq--------   72 (200)
T KOG3093|consen    2 DAISATKRLLRRQLKRSLGALDAEIIARQSEAISKKVLELPWFKNSKRVSIYMSMDK-GEVDTGEIIKEAFQ--------   72 (200)
T ss_pred             chHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHhhHHHHhcCceEEEEecCc-ccccHHHHHHHHHh--------
Confidence            457788999999999999999999999999999999999999999999999999995 69999999999999        


Q ss_pred             CCCcEEEEeeEeCCCCceEEEEccCCccc---ccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccc
Q 025859           98 KTRKKLYVPRVEDKNSHMRMFHISSIDDL---IANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLG  174 (247)
Q Consensus        98 ~~gk~v~lP~~~~~~~~m~f~~~~~~~~L---~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG  174 (247)
                       .||.||+|+|...+..|.++++...+++   ..+.|||++|.+.    ..+++.+.....+|||||||||||+.|.|||
T Consensus        73 -~gK~vFiP~~~~~~s~m~Mvr~~~~e~~~~l~~t~w~i~qp~~~----~~re~~~~t~~~lDLiivPGvAFd~~g~RlG  147 (200)
T KOG3093|consen   73 -DGKEVFIPRCTHTSSKMDMVRIDHMEELESLPMTSWGIRQPKPG----GPREDALETGHPLDLIIVPGVAFDRKGARLG  147 (200)
T ss_pred             -cCCeEEeeeeecCCCceeEEEeCChHHHhhCcccccCCCCCCCC----CchhhhccCCCcceEEEecccccchhhhhcc
Confidence             8999999999877778999999887554   4578999999764    2455555444579999999999999999999


Q ss_pred             cCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCC
Q 025859          175 RGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPS  232 (247)
Q Consensus       175 ~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~  232 (247)
                      +|+||||+||.++..+.   .+.+|.+||+||.+|++.+  ||+++||+.||.||||+
T Consensus       148 hGkGYYD~flkry~~~~---~~~kp~~vgL~l~EQI~~~--IPv~~~Dv~lD~vvt~~  200 (200)
T KOG3093|consen  148 HGKGYYDDFLKRYQIHA---PEQKPLLVGLCLKEQILSE--IPVEEHDVKLDAVVTED  200 (200)
T ss_pred             CCcchHHHHHHHHHHhc---cccCchhhhhhhhHhhccc--CCCCccceeeeEeecCC
Confidence            99999999999998753   5678999999999999998  99999999999999985

>COG0212 5-formyltetrahydrofolate cyclo-ligase [Coenzyme metabolism]

Probab=100.00  E-value=3.8e-49  Score=333.54  Aligned_cols=186  Identities=32%  Similarity=0.570  Sum_probs=167.8

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCc
Q 025859           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRK  101 (247)
Q Consensus        22 ~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk  101 (247)
                      +.|++||++++++|.++++..+...+..+++++..++.+.++++|++|+|++  +|+||.++++.+|+         +||
T Consensus         3 ~~K~~lR~~~~~~r~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~ia~y~~~~--~E~~~~~l~~~~l~---------~gk   71 (191)
T COG0212           3 ATKSALRKLLLERRIALSPEERHEADQRIAKLLASLIEVKKAKTIALYVPFN--GEIDTRPLIRQALR---------RGK   71 (191)
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccccccEEEEEeccC--CCCCcHHHHHHHHH---------cCC
Confidence            5699999999999999999999999999999999999999999999999998  79999999999998         899


Q ss_pred             EEEEeeEeCCCCceEEEEccCC--cccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCch
Q 025859          102 KLYVPRVEDKNSHMRMFHISSI--DDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGY  179 (247)
Q Consensus       102 ~v~lP~~~~~~~~m~f~~~~~~--~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGy  179 (247)
                      +|++|++.+  ..+.|..|.+.  ..+..+.|||.||.....      .+ .+ ..+|+||||+||||++|+||||||||
T Consensus        72 ~l~lP~~~~--~~~~f~~~~~~~~~~~~~~~~gi~eP~~~~~------~~-~~-~~iDlvlvP~Vafd~~G~RLG~GgGy  141 (191)
T COG0212          72 RLLLPKLRD--YKLLFLRYIPDPLQPLIKNRFGILEPGEYGR------KI-PP-PEIDLVLVPLVAFDKQGYRLGYGGGY  141 (191)
T ss_pred             EEEEeEEEc--CcceeEEecCCCCcccccccccccCCCccCC------cc-CC-CcCCEEEeCceeECCCCccccCCCch
Confidence            999999986  34778888887  888899999999976421      11 12 67899999999999999999999999


Q ss_pred             HhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEc
Q 025859          180 YDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPI  237 (247)
Q Consensus       180 YDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~  237 (247)
                      |||||+.+.       +.++.+||+||+||+++.  +|.|+||++||.||||++++++
T Consensus       142 YDR~la~~~-------~~~~~~ig~~~~~Q~v~~--lP~e~hDv~ld~ivt~~~~~~~  190 (191)
T COG0212         142 YDRYLANLR-------GRKTPTVGIAYDCQLVDH--LPREPHDVPLDAIVTEEGVIRC  190 (191)
T ss_pred             HHHHHHhhc-------cCCCCEEEEEEeeeeecc--CCCCcccCcccEEEeCCceEec
Confidence            999999985       135789999999999999  9999999999999999999986

>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]

Probab=99.68  E-value=2.1e-16  Score=137.80  Aligned_cols=189  Identities=21%  Similarity=0.290  Sum_probs=133.4

Q ss_pred             hHHHHHHHHHHHHHHHHhc----CCHHHH------HHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHH
Q 025859           19 SIFQQKRILRSQVRKTLKS----MDPSLR------SHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQIL   88 (247)
Q Consensus        19 ~~~~~K~~LR~~~~~~R~~----l~~~~~------~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l   88 (247)
                      ++...|..+|.+++....+    +++.-.      ...+.++|+.+.++..|+.|+.|-+-..      -.+..+...+|
T Consensus        29 d~~~~k~~iR~q~W~~me~~n~a~~prpvhhRIPnFvGa~~Aa~~~a~ld~F~~Aq~vKVnpD------~pl~~~r~L~L  102 (396)
T KOG4410|consen   29 DIEPTKRSIRVQTWKKMEEGNVAIGPRPVHHRIPNFVGADKAAALFANLDEFKKAQHVKVNPD------RPLHEFRELAL  102 (396)
T ss_pred             CcchhHHHHHHHHHHHHhhcccccCCcchhhcCccccchHHHHHHhhhhHHHhhcceeecCCC------chHHHHHHHHh
Confidence            5777899999999987543    222211      1346677888889999999999877532      23556666666


Q ss_pred             hCCCCCCCCCCCcEEEEeeEeCCCCceEEEEccCCcc-----ccc--ccCCcc---CCCCCCCCCCchhhhcccCCCccE
Q 025859           89 QIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD-----LIA--NSMNIL---EPAPVDADGNEREDVMQANEPVDL  158 (247)
Q Consensus        89 ~~~~~~~~~~~gk~v~lP~~~~~~~~m~f~~~~~~~~-----L~~--g~~gI~---EP~~~~~~~~~~~~~~~~~~~iDl  158 (247)
                      .         ..|++++|.......  .|..++...+     +..  ..-|+.   .+..           +.....+||
T Consensus       103 ~---------~~Ksll~PspRlrtg--lf~kv~~~~~ate~i~~~c~tsqgv~ky~~~IG-----------LDs~lkvDl  160 (396)
T KOG4410|consen  103 L---------ADKSLLLPSPRLRTG--LFLKVDVLADATEEIKKECLTSQGVQKYRSEIG-----------LDSGLKVDL  160 (396)
T ss_pred             h---------cccceecCCchhhcc--eeeeeccCCCCcHHHHHHHHhhhhHHHhCcccc-----------cccCceEEE
Confidence            6         679999998765432  2555554311     110  112221   1222           122346899


Q ss_pred             EEEecceecCCCCccccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCC---CCCCccCCEEEeCCcEE
Q 025859          159 FLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISA---TPKDMPVDALVSPSGVI  235 (247)
Q Consensus       159 ilVPglAfD~~G~RLG~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~---e~hDi~ld~iiTe~~ii  235 (247)
                      |+|..||+++.|+|||.|-||-|--...+...+  ......+.|.++++||+||.  ||.   +.||+|||+|.||+++|
T Consensus       161 vViGSVavs~~G~RiGkGeGfAdLeygmli~mG--Ai~~~TpvVTiVHDcQvVD~--iP~el~~~hD~pVDiI~TPTrvI  236 (396)
T KOG4410|consen  161 VVIGSVAVSREGYRIGKGEGFADLEYGMLIEMG--AITPKTPVVTIVHDCQVVDS--IPPELFQKHDTPVDIIATPTRVI  236 (396)
T ss_pred             EEEeeEEecccceeeccCCchhhhhhHHHHHhc--ccCCCCceEEEEecceeecc--CCHHHHhhcCCCccEEeccceEE
Confidence            999999999999999999999998888776543  23345678999999999999  987   49999999999999999


Q ss_pred             Eccc
Q 025859          236 PISA  239 (247)
Q Consensus       236 ~~~~  239 (247)
                      +...
T Consensus       237 ~t~~  240 (396)
T KOG4410|consen  237 RTPK  240 (396)
T ss_pred             ecCC
Confidence            9853

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	247
3hxt_A	203	Structure Of Human Mthfs Length = 203		3e-12
1sou_A	194	Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltet		3e-09

>pdb|3HXT|A Chain A, Structure Of Human Mthfs Length = 203

Iteration: 1
 Score = 68.6 bits (166), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/212 (25%), Positives = 100/212 (47%), Gaps = 31/212 (14%)
Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E++T ++
Sbjct: 10  KRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQD--EIETEEI 67
Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISS---IDDLIANSMNILEPAPVD 140
           +  I Q           K  ++PR   +++HM M  I S   I  L   S NI +P    
Sbjct: 68  IKDIFQ---------RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPG--- 115
Query: 141 ADGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKK---YQELAKERNWR 197
            +G+ RE+ +     +DL  +PGL FD           YYD +LK+   +QE+       
Sbjct: 116 -EGDVREEALSTG-GLDLIFMPGLGFDKHGNRLGRGKGYYDAYLKRCLQHQEV------- 166
Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALV 229
           +P  +AL++  QI  +  +     DM VD ++
Sbjct: 167 KPYTLALAFKEQICLQ--VPVNENDMKVDEVL 196

>pdb|1SOU|A Chain A, Nmr Structure Of Aquifex Aeolicus 5,10- Methenyltetrahydrofolate Synthetase: Northeast Structural Genomics Consortium Target Qr46 Length = 194

Iteration: 1
 Score = 58.9 bits (141), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 94/213 (44%), Gaps = 39/213 (18%)
Query: 26  ILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE----APWFKSSQRLCAYISCSALREVDTS 81
           +L+S++RK +     +L   E   + + V+      P FK S+++  Y  C    EVD +
Sbjct: 1   MLKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALY--CPIKGEVDLT 58
Query: 82  KLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDA 141
            L  ++L+           K+L +P+VE   + + ++ + S   L   +  I+EP  V+ 
Sbjct: 59  PLFPEVLK----------EKELILPKVE--GNEISLYRVHSPACLGVGAFGIMEP--VEG 104
Query: 142 DGNEREDVMQANEPVDLFLLPGLAFDXXXXXXXXXXXYYDTFLKKYQELAKERNWRQPLF 201
           +    EDV       D   +PG+AFD           YYD  LK+ + L           
Sbjct: 105 ERVNPEDV-------DFIAVPGVAFDLEGYRLGFGKGYYDRLLKRVKGLK---------- 147
Query: 202 VALSYSLQIMDEGIISATPKDMPVDALVSPSGV 234
           V ++YS Q+ +   +     D+PVD LV+   V
Sbjct: 148 VGVAYSFQVFER--LPRDAWDIPVDVLVTEKNV 178

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	247
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	6e-59
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	9e-56
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	1e-55
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	1e-46
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	5e-41
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	9e-33

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A Length = 203

 Score =  184 bits (469), Expect = 6e-59
 Identities = 60/221 (27%), Positives = 107/221 (48%), Gaps = 25/221 (11%)

Query: 18  ESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALRE 77
            ++   KR LR ++++ L++M    R  +   + + V+    ++ S+R+  ++S     E
Sbjct: 4   AAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DE 61

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDD---LIANSMNIL 134
           ++T +++  I Q     G     K  ++PR   +++HM M  I S ++   L   S NI 
Sbjct: 62  IETEEIIKDIFQ----RG-----KICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIP 112

Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKER 194
           +P      G+ RE+ +      DL  +PGL FD+ G RLGRG GYYD +LK+      + 
Sbjct: 113 QPGE----GDVREEALSTGGL-DLIFMPGLGFDKHGNRLGRGKGYYDAYLKRC----LQH 163

Query: 195 NWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
              +P  +AL++  QI  +  +     DM VD ++      
Sbjct: 164 QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSST 202

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis} Length = 200

 Score =  176 bits (448), Expect = 9e-56
 Identities = 53/221 (23%), Positives = 98/221 (44%), Gaps = 30/221 (13%)

Query: 15  HDLESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSA 74
           H    + ++K  LR Q+ + + S+     +     I   + E   +  ++ +   +S   
Sbjct: 4   HHHHHVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME- 62

Query: 75  LREVDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNIL 134
             EV+T  ++ +           K  K++ VP+   +   M    IS+ D L    MN+ 
Sbjct: 63  -NEVNTYPIIEKAW---------KEGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLR 112

Query: 135 EPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKER 194
           EP P         + + A+E  DL ++PG+A+   G R+G GGGYYD +L  Y       
Sbjct: 113 EPIP------ALTEEVNADEI-DLQIVPGVAYTERGERIGYGGGYYDRYLVHY------- 158

Query: 195 NWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
              +   ++L+YS Q+++   I   P D  V+ +++  G +
Sbjct: 159 ---KGKTLSLAYSFQMVEH--IPVEPFDKNVEKIITEKGTM 194

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis} Length = 187

 Score =  175 bits (446), Expect = 1e-55
 Identities = 47/212 (22%), Positives = 90/212 (42%), Gaps = 30/212 (14%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +  + L ++       +   + K +   P ++++  +   IS     E+ T  +
Sbjct: 2   KSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPV 59

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           + Q  +    +G     K++ +P+       M+     + D L      +LEP       
Sbjct: 60  IEQAWE----EG-----KQVCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVI----- 105

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
            E+   +  ++  DL ++PG+ FD +G R+G GGGYYD +L +Y          +   V+
Sbjct: 106 -EKTKEVNPSQI-DLMIVPGVCFDVNGFRVGFGGGYYDRYLSEY----------EGKTVS 153

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
           L    Q+     +   P D+PV  L++   +I
Sbjct: 154 LLLECQLFAH--VPRLPHDIPVHKLITEDRII 183

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6 Length = 194

 Score =  152 bits (387), Expect = 1e-46
 Identities = 55/212 (25%), Positives = 90/212 (42%), Gaps = 35/212 (16%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +V     ++    R      +   +   P FK S+++  Y       EVD + L
Sbjct: 3   KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
             ++L+           K+L +P+VE     + ++ + S   L   +  I+EP       
Sbjct: 61  FPEVLK----------EKELILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVE----- 103

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
               + +   + VD   +PG+AFD  G RLG G GYYD  LK+           + L V 
Sbjct: 104 ---GERVNPED-VDFIAVPGVAFDLEGYRLGFGKGYYDRLLKRV----------KGLKVG 149

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
           ++YS Q+ +   +     D+PVD LV+   V 
Sbjct: 150 VAYSFQVFER--LPRDAWDIPVDVLVTEKNVR 179

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6 Length = 184

 Score =  138 bits (349), Expect = 5e-41
 Identities = 50/218 (22%), Positives = 77/218 (35%), Gaps = 44/218 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y       E++   L
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPLP--HELNLLPL 57

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
           +                 + Y+P+V  K       H      L      +LEP       
Sbjct: 58  MEAY------------PARYYLPKVAGKG---LTVH--PFGPLAPGPFGLLEPTT----- 95

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
                        DL ++PGLAFDR G RLG G G+YD FLK+           +   V 
Sbjct: 96  ----PPEDPRVL-DLVVVPGLAFDREGYRLGHGQGFYDRFLKEV----------RAATVG 140

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAA 241
           +     +     +   P D+PVD L + +GV  +   A
Sbjct: 141 VVPQALLFPA--LPRDPWDVPVDHLATEAGVEAVKRPA 176

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A* Length = 189

 Score =  116 bits (294), Expect = 9e-33
 Identities = 43/214 (20%), Positives = 76/214 (35%), Gaps = 49/214 (22%)

Query: 19  SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAP-WFKSSQRLCAYISCSALRE 77
                K  LR Q+ +   ++    +SH D  I + ++         + +  Y       E
Sbjct: 23  QGHMDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NE 80

Query: 78  VDTSKLLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPA 137
           V       + L+          + +   P+V   ++ +           I    N  EP 
Sbjct: 81  VTFVDFFFEFLK--------INQIRAVYPKVI-SDTEI---------IFIDQETNTFEP- 121

Query: 138 PVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWR 197
                          N+  D FL+P + F++   RLG G GYYD +L +          R
Sbjct: 122 ---------------NQI-DCFLIPLVGFNKDNYRLGFGKGYYDRYLMQLT--------R 157

Query: 198 QPLFVALSYSLQIMDEGIISATPKDMPVDALVSP 231
           Q   + ++YS Q  D     A P D+ +D +++ 
Sbjct: 158 QQPKIGIAYSFQKGD---FLADPWDVQLDLIIND 188

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	247
3hy3_A	203	5-formyltetrahydrofolate cyclo-ligase; antifolate,	100.0
1ydm_A	187	Hypothetical protein YQGN; northeast structural ge	100.0
2jcb_A	200	5-formyltetrahydrofolate cyclo-ligase family PROT;	100.0
1sou_A	194	5,10-methenyltetrahydrofolate synthetase; structur	100.0
1wkc_A	184	HB8 TT1367 protein; structural genomics, riken str	100.0
1sbq_A	189	H91_ORF164, 5,10-methenyltetrahydrofolate syntheta	100.0

>3hy3_A 5-formyltetrahydrofolate cyclo-ligase; antifolate, cancer, ATP-binding, binding, magnesium, nucleotide-binding; HET: 10F; 1.80A {Homo sapiens} PDB: 3hxt_A* 3hy4_A* 3hy6_A

Probab=100.00  E-value=7.7e-58  Score=388.94  Aligned_cols=196  Identities=30%  Similarity=0.553  Sum_probs=167.9

Q ss_pred             hhhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCC
Q 025859           17 LESIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGD   96 (247)
Q Consensus        17 ~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~   96 (247)
                      |+++...|++||++++++|++|+++++..+|.+|+++|.+++.|+++++|++|+|++  +|+||.+||+.+++       
T Consensus         3 ~~~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~-------   73 (203)
T 3hy3_A            3 AAAVSSAKRSLRGELKQRLRAMSAEERLRQSRVLSQKVIAHSEYQKSKRISIFLSMQ--DEIETEEIIKDIFQ-------   73 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHTCHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH-------
T ss_pred             hhHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHhhhcCCEEEEEcCCC--CCcCHHHHHHHHHH-------
Confidence            567888999999999999999999999999999999999999999999999999998  69999999999998       


Q ss_pred             CCCCcEEEEeeEeCCCCceEEEEccCCc---ccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCcc
Q 025859           97 TKTRKKLYVPRVEDKNSHMRMFHISSID---DLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRL  173 (247)
Q Consensus        97 ~~~gk~v~lP~~~~~~~~m~f~~~~~~~---~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RL  173 (247)
                        .||+|+||+|...+..|.|+.|.+.+   .|.+|.|||+||.....    ..+.+ ....+|||||||||||++|+||
T Consensus        74 --~gk~v~lP~~~~~~~~m~~~~~~~~~~~~~L~~g~~GI~EP~~~~~----~~~~~-~~~~~DlvlVP~vaFD~~G~RL  146 (203)
T 3hy3_A           74 --RGKICFIPRYRFQSNHMDMVRIESPEEISLLPKTSWNIPQPGEGDV----REEAL-STGGLDLIFMPGLGFDKHGNRL  146 (203)
T ss_dssp             --TTCEEEEEEEETTTTEEEEEEECCHHHHTTSCBCTTSCBCCCTTCC----CCBGG-GTTCCSEEEECCSEECTTCCEE
T ss_pred             --CCCEEEEEEEecCCCeEEEEEeCChhhhhhccCCCCCCCCCCCccc----ccccc-CccCCCEEEeCCeEECCCCcee
Confidence              89999999998655579999998865   47899999999975311    01111 3457899999999999999999


Q ss_pred             ccCCchHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcE
Q 025859          174 GRGGGYYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGV  234 (247)
Q Consensus       174 G~GgGyYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~i  234 (247)
                      |||||||||||+.++..    .+..+.+|||||++|++++  ||+|+||++||+||||+|+
T Consensus       147 G~GgGyYDR~L~~~~~~----~~~~~~~igla~~~Q~~~~--lP~e~hDi~ld~iiTe~~~  201 (203)
T 3hy3_A          147 GRGKGYYDAYLKRCLQH----QEVKPYTLALAFKEQICLQ--VPVNENDMKVDEVLYEDSS  201 (203)
T ss_dssp             CSSSCHHHHHHHHHTTT----CSSCCEEEEECCGGGBCSC--CCCC--CCCCSEEECC---
T ss_pred             cCCCchHHHHHHHhhhh----cCCCCeEEEEecHHhccCC--CCCCcccccCCEEEeCCCc
Confidence            99999999999987531    1235778999999999998  9999999999999999986

>1ydm_A Hypothetical protein YQGN; northeast structural genomics, SR44, X-RAY, PSI, protein structure initiative; 2.50A {Bacillus subtilis}

Probab=100.00  E-value=5.2e-57  Score=379.28  Aligned_cols=186  Identities=24%  Similarity=0.439  Sum_probs=163.1

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 025859           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (247)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~  102 (247)
                      .|++||++++++|++++++++..+|.+|+++|.+++.|++|++|++|+|++  +|+||.+|++.+|+         .||+
T Consensus         1 ~K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~gk~   69 (187)
T 1ydm_A            1 MKSQLRKKTLEALSALSNEDILQKTERMYKYLFSLPEWQNAGTIAVTISRG--LEIPTRPVIEQAWE---------EGKQ   69 (187)
T ss_dssp             ---CHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTSHHHHTCSEEECCCCCT--TSCCCHHHHHHHHH---------TTCE
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCHHhhhCCEEEEECCCC--CCCCHHHHHHHHHH---------CCCE
Confidence            388999999999999999999999999999999999999999999999998  79999999999999         8999


Q ss_pred             EEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhh
Q 025859          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDT  182 (247)
Q Consensus       103 v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR  182 (247)
                      |+||++...+..|.|+.|++.++|++|.|||+||.....      . ......+|+|||||||||++|+|||||||||||
T Consensus        70 v~lP~~~~~~~~m~f~~~~~~~~L~~~~~gi~EP~~~~~------~-~~~~~~iDlvivP~vafD~~G~RLG~GgGyYDR  142 (187)
T 1ydm_A           70 VCIPKCHPDTKKMQFRTYQTDDQLETVYAGLLEPVIEKT------K-EVNPSQIDLMIVPGVCFDVNGFRVGFGGGYYDR  142 (187)
T ss_dssp             EEEECC---CCCCCEEECCCCTTHHHHHTTSCCCC--CC------C-CCCGGGCCEEECCCSEEETTSCEECCSCCSTTT
T ss_pred             EEEeEEecCCCcEEEEEeCCCCccCcCCCCCCCCCCccc------c-cCCccCCCEEEeCCeEECCCCCcccCCccHHHH
Confidence            999998644456999999998899999999999974210      0 112357899999999999999999999999999


Q ss_pred             hhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEcc
Q 025859          183 FLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPIS  238 (247)
Q Consensus       183 ~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~  238 (247)
                      ||+.++          ..+||+||++|++++  ||+|+||++||+||||+++++|.
T Consensus       143 ~L~~~~----------~~~igla~~~Q~~~~--lP~e~hD~~ld~iiTe~~~~~~~  186 (187)
T 1ydm_A          143 YLSEYE----------GKTVSLLLECQLFAH--VPRLPHDIPVHKLITEDRIISCF  186 (187)
T ss_dssp             GGGTCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEECSSCEEECC
T ss_pred             HHHhCC----------CCEEEEEeHHHhcCC--CCCccccCcCCEEEECCcEEecc
Confidence            999763          257999999999998  99999999999999999999984

>2jcb_A 5-formyltetrahydrofolate cyclo-ligase family PROT; folate metabolism; HET: ADP; 1.6A {Bacillus anthracis}

Probab=100.00  E-value=1.3e-56  Score=380.49  Aligned_cols=188  Identities=26%  Similarity=0.483  Sum_probs=169.7

Q ss_pred             hHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCC
Q 025859           19 SIFQQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTK   98 (247)
Q Consensus        19 ~~~~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~   98 (247)
                      .+.+.|++||++++++|++|+++++..+|.+|+++|.+++.|++|++|++|+|++  +|+||.+|++.+++         
T Consensus         8 ~~~~~K~~LR~~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------   76 (200)
T 2jcb_A            8 HVREEKLRLRKQIIEHMNSLSKERYTTLSEQIVFSLYEQKEWAEAKTIGITLSME--NEVNTYPIIEKAWK---------   76 (200)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTSHHHHHCSEEECCCCCT--TSCCCHHHHHHHHH---------
T ss_pred             hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------
Confidence            4678899999999999999999999999999999999999999999999999998  79999999999999         


Q ss_pred             CCcEEEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCc
Q 025859           99 TRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGG  178 (247)
Q Consensus        99 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgG  178 (247)
                      .||+|+||++...+..|.|+.|++.++|++|.|||+||.....      . ......+|||||||||||++|+|||||||
T Consensus        77 ~gk~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~GI~EP~~~~~------~-~~~~~~iDlvlVP~vAfD~~G~RLG~GgG  149 (200)
T 2jcb_A           77 EGKRVVVPKCNKETRTMSFRQISNFDQLETVYMNLREPIPALT------E-EVNADEIDLQIVPGVAYTERGERIGYGGG  149 (200)
T ss_dssp             TTCEEEEEEEETTTTEEEEEEESSGGGEEEEETTEEEECGGGC------E-ECCGGGCSEEECCCSEECTTSCEECSSSC
T ss_pred             CCCEEEEeEEEcCCCcEEEEEeCCCcccccCCCCCCCCCCccc------c-cCCccCCCEEEECCeEECCCCCeeccCCc
Confidence            8999999999765567999999998999999999999964210      0 11235789999999999999999999999


Q ss_pred             hHhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEE
Q 025859          179 YYDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIP  236 (247)
Q Consensus       179 yYDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~  236 (247)
                      ||||||+.++          ..+||+||++|++++  ||+|+||++||+||||++++.
T Consensus       150 yYDR~La~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~~  195 (200)
T 2jcb_A          150 YYDRYLVHYK----------GKTLSLAYSFQMVEH--IPVEPFDKNVEKIITEKGTMV  195 (200)
T ss_dssp             HHHHHTTTCC----------SEEEEECCGGGBCSC--CCCCTTCCCCSEEEETTEEEE
T ss_pred             hHHHHHhhcC----------CCEEEEEehhhccCC--CCCCccCCcCCEEEECCeEEE
Confidence            9999999763          258999999999998  999999999999999999983

>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6

Probab=100.00  E-value=1.5e-55  Score=372.46  Aligned_cols=183  Identities=30%  Similarity=0.519  Sum_probs=166.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (247)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v  103 (247)
                      |++||++++++|++++++++..+|.+|+++|.+++.|++|++|++|+|++  +|+||.+|++.+++         . |+|
T Consensus         3 K~~lR~~~~~~r~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~~~~~---------~-k~v   70 (194)
T 1sou_A            3 KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK---------E-KEL   70 (194)
T ss_dssp             HHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH---------H-SEE
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhChhhhcCCEEEEECCCC--CCCCHHHHHHHHHH---------c-CCE
Confidence            89999999999999999999999999999999999999999999999998  79999999999998         8 999


Q ss_pred             EEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhhh
Q 025859          104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTF  183 (247)
Q Consensus       104 ~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR~  183 (247)
                      +||++ . +..|.|+.|.+.++|++|.|||+||.. .   .     ......+|||||||||||++|+||||||||||||
T Consensus        71 ~lP~~-~-~~~m~f~~~~~~~~L~~g~~GI~EP~~-~---~-----~~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~  139 (194)
T 1sou_A           71 ILPKV-E-GNEISLYRVHSPACLGVGAFGIMEPVE-G---E-----RVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRL  139 (194)
T ss_dssp             EEEEE-S-SSSEEEEEESSSCCCEECSSSCEECCS-S---E-----EECGGGCSEEEECCSCBCSSSCBCCSCCSSHHHH
T ss_pred             EEEEe-c-CCeeEEEEECCCCccCCCCCCCCCCCc-c---c-----cCCCCCCCEEEECCeEECCCCceeccCCcHHHHH
Confidence            99998 3 346999999998999999999999963 1   0     1123578999999999999999999999999999


Q ss_pred             hhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEccccc
Q 025859          184 LKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAAA  241 (247)
Q Consensus       184 L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~~~~  241 (247)
                      |+.++          +.+||+||++|++++  ||+|+||++||+||||++++++....
T Consensus       140 L~~~~----------~~~igla~~~Q~v~~--lP~e~hDi~ld~iiTe~~~~~~~~~~  185 (194)
T 1sou_A          140 LKRVK----------GLKVGVAYSFQVFER--LPRDAWDIPVDVLVTEKNVRRLRDGR  185 (194)
T ss_dssp             HHHCC----------SEEEEECCGGGBCSC--CCCCSCCCCCSEEECSSCEEESCCCC
T ss_pred             HHhcC----------CCEEEEEchHhccCC--CCCCcccccCCEEEECCeEEEecCCC
Confidence            99763          257999999999998  99999999999999999999996543

>1wkc_A HB8 TT1367 protein; structural genomics, riken structural genomics/proteomi initiative, RSGI, unknown function; 1.70A {Thermus thermophilus} SCOP: c.124.1.6

Probab=100.00  E-value=3.2e-53  Score=355.35  Aligned_cols=173  Identities=27%  Similarity=0.474  Sum_probs=149.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcEE
Q 025859           24 KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKKL  103 (247)
Q Consensus        24 K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~v  103 (247)
                      |++||++++++|++++.++   +|.+|+++|.+++.|++|++|++|+|++  +|+||.+|++  |+         . |+|
T Consensus         3 K~~lR~~~~~~r~~l~~~~---~s~~i~~~l~~~~~~~~a~~I~~y~~~~--~Evdt~~li~--~~---------~-k~v   65 (184)
T 1wkc_A            3 KAELRRRARAAWRRLDLKA---LSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLME--AY---------P-ARY   65 (184)
T ss_dssp             HHHHHHHHHHHHHTSCHHH---HHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHH--HS---------C-CEE
T ss_pred             HHHHHHHHHHHHHcCCHHH---HHHHHHHHHHhChhhhcCCEEEEECCCC--CCcCHHHHHH--hh---------c-CCE
Confidence            8999999999999999987   7889999999999999999999999998  7999999999  66         7 999


Q ss_pred             EEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhhh
Q 025859          104 YVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTF  183 (247)
Q Consensus       104 ~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR~  183 (247)
                      +||+|..+  .|.|+.|+   +|.+|.|||+|| ...        . .....+|+|||||||||++|+||||||||||||
T Consensus        66 ~lP~~~~~--~m~f~~~~---~L~~~~~gi~EP-~~~--------~-~~~~~iDlvlvP~vafD~~G~RLG~GgGyYDR~  130 (184)
T 1wkc_A           66 YLPKVAGK--GLTVHPFG---PLAPGPFGLLEP-TTP--------P-EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDRF  130 (184)
T ss_dssp             EEEEEETT--EEEEEESC---CBC-------CB-CSC--------C-BCGGGCSEEEECCSEEETTSCEECCSSCHHHHH
T ss_pred             EEeEEeCC--ceEEEEec---ccCCCCCCCCCC-CCc--------c-CCCCCCCEEEECcEEECCCCCEeeCCccHHHHH
Confidence            99998643  69999997   899999999999 321        0 123568999999999999999999999999999


Q ss_pred             hhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEcccc
Q 025859          184 LKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAA  240 (247)
Q Consensus       184 L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~~~  240 (247)
                      |+.++          +.+||+||++|++++  ||+|+||++||+||||+++++++..
T Consensus       131 L~~~~----------~~~igl~~~~Q~~~~--lp~e~hD~~ld~iiT~~~~~~~~~~  175 (184)
T 1wkc_A          131 LKEVR----------AATVGVVPQALLFPA--LPRDPWDVPVDHLATEAGVEAVKRP  175 (184)
T ss_dssp             HHHCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEEETTEEEECCCC
T ss_pred             HHhcC----------CCEEEEEchhhccCC--CCCccccCccCEEEECCEEEEcCCC
Confidence            99763          358999999999998  9999999999999999999999775

>1sbq_A H91_ORF164, 5,10-methenyltetrahydrofolate synthetase homolog; MTHFS, 5- formyltetrahydrofolate cyclo-ligase, structural genomics; 2.20A {Mycoplasma pneumoniae} SCOP: c.124.1.6 PDB: 1u3f_A* 1u3g_A*

Probab=100.00  E-value=3.8e-49  Score=331.69  Aligned_cols=162  Identities=23%  Similarity=0.389  Sum_probs=145.2

Q ss_pred             HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCcc-CCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCC
Q 025859           22 QQKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTR  100 (247)
Q Consensus        22 ~~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~g  100 (247)
                      +.|++||++++++|++++++++..+|.+|+++|.+++.|+ +|++|++|+|++  +|+||.+|++.+|+         .|
T Consensus        26 m~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~L~~~~~~~~~a~~I~~Y~~~~--~Evdt~~li~~~~~---------~g   94 (189)
T 1sbq_A           26 MDKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLK---------IN   94 (189)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHH---------HT
T ss_pred             ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhHHhHhhCCEEEEECCCC--CCCCHHHHHHHHHH---------cC
Confidence            4599999999999999999999999999999999999999 999999999998  79999999999998         89


Q ss_pred             c-EEEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCch
Q 025859          101 K-KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGY  179 (247)
Q Consensus       101 k-~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGy  179 (247)
                      | +|+||++... ..|.|+.|.+.            |..              ...+|||||||||||++|+||||||||
T Consensus        95 k~~v~lP~~~~~-~~m~f~~~~~~------------~~~--------------~~~iDlvlVP~vAfD~~G~RLG~GgGy  147 (189)
T 1sbq_A           95 QIRAVYPKVISD-TEIIFIDQETN------------TFE--------------PNQIDCFLIPLVGFNKDNYRLGFGKGY  147 (189)
T ss_dssp             TCEEEEEEECSS-SCEEEECTTCC------------EEC--------------GGGCCEEEEECSEECTTCCEECCSSCH
T ss_pred             CCeEEEeEEccC-CceEEEEeCCC------------CCC--------------cccCCEEEECceEECCCCCEeecCCch
Confidence            9 9999999643 45999998754            211              135799999999999999999999999


Q ss_pred             HhhhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCC
Q 025859          180 YDTFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPS  232 (247)
Q Consensus       180 YDR~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~  232 (247)
                      |||||+.++.        .+.+|||||++|+++   ||+|+||++||+||||+
T Consensus       148 YDR~La~~~~--------~~~~igla~~~Q~v~---lP~e~hDiplD~IiTe~  189 (189)
T 1sbq_A          148 YDRYLMQLTR--------QQPKIGIAYSFQKGD---FLADPWDVQLDLIINDE  189 (189)
T ss_dssp             HHHHGGGCCS--------CCCEEEEECGGGBCC---CCCCTTSCCCSEEEECC
T ss_pred             HHHHHHhcCC--------CCCEEEEechHheeC---CCCCcccCcCCEEEcCC
Confidence            9999998742        356899999999985   99999999999999995

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	247
d1soua_	194	c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquif	8e-20
d1wkca_	175	c.124.1.6 (A:) Hypothetical protein TTHA1611 {Ther	2e-18
d1sbqa_	164	c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synth	2e-15

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]} Length = 194

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

 Score = 81.8 bits (201), Expect = 8e-20
 Identities = 51/212 (24%), Positives = 82/212 (38%), Gaps = 35/212 (16%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR +V     ++    R      +   +   P FK S+++  Y       EVD + L
Sbjct: 3   KSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPL 60

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
                         +  K+  +   + + + + ++ + S   L   +  I+EP       
Sbjct: 61  ------------FPEVLKEKELILPKVEGNEISLYRVHSPACLGVGAFGIMEPVE----- 103

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
                     E VD   +PG+AFD  G RLG G GYYD  LK            + L V 
Sbjct: 104 ----GERVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDRLLK----------RVKGLKVG 149

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVI 235
           ++YS Q+ +   +     D+PVD LV+   V 
Sbjct: 150 VAYSFQVFER--LPRDAWDIPVDVLVTEKNVR 179

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

 Score = 78.0 bits (191), Expect = 2e-18
 Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 44/214 (20%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKL 83
           K  LR + R   + +D    S    A+   +L     +  + +  Y              
Sbjct: 3   KAELRRRARAAWRRLDLKALSR---AVGAALLPWLRERGFRHILLYHPL----------- 48

Query: 84  LSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADG 143
                     + +     + Y  R        +   +     L      +LEP     D 
Sbjct: 49  --------PHELNLLPLMEAYPARYYLPKVAGKGLTVHPFGPLAPGPFGLLEPTTPPEDP 100

Query: 144 NEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFVA 203
                       +DL ++PGLAFDR G RLG G G+YD FLK+           +   V 
Sbjct: 101 RV----------LDLVVVPGLAFDREGYRLGHGQGFYDRFLKEV----------RAATVG 140

Query: 204 LSYSLQIMDEGIISATPKDMPVDALVSPSGVIPI 237
           +     +     +   P D+PVD L + +GV  +
Sbjct: 141 VVPQALLFPA--LPRDPWDVPVDHLATEAGVEAV 172

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]} Length = 164

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

 Score = 69.5 bits (169), Expect = 2e-15
 Identities = 38/209 (18%), Positives = 69/209 (33%), Gaps = 49/209 (23%)

Query: 24  KRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLE-APWFKSSQRLCAYISCSALREVDTSK 82
           K  LR Q+ +   ++    +SH D  I + ++         + +  Y       EV    
Sbjct: 3   KNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVD 60

Query: 83  LLSQILQIPNADGDTKTRKKLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDAD 142
              + L         K  +   V      ++ +      +                    
Sbjct: 61  FFFEFL---------KINQIRAVYPKVISDTEIIFIDQETN------------------- 92

Query: 143 GNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDTFLKKYQELAKERNWRQPLFV 202
                        +D FL+P + F++   RLG G GYYD +L +          RQ   +
Sbjct: 93  -------TFEPNQIDCFLIPLVGFNKDNYRLGFGKGYYDRYLMQL--------TRQQPKI 137

Query: 203 ALSYSLQIMDEGIISATPKDMPVDALVSP 231
            ++YS Q  D     A P D+ +D +++ 
Sbjct: 138 GIAYSFQKGD---FLADPWDVQLDLIIND 163

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	247
d1soua_	194	Hypothetical protein aq_1731 {Aquifex aeolicus [Ta	100.0
d1wkca_	175	Hypothetical protein TTHA1611 {Thermus thermophilu	100.0
d1sbqa_	164	5,10-methenyltetrahydrofolate synthetase homolog M	100.0

>d1soua_ c.124.1.6 (A:) Hypothetical protein aq_1731 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein aq 1731
species: Aquifex aeolicus [TaxId: 63363]

Probab=100.00  E-value=3.6e-56  Score=374.20  Aligned_cols=183  Identities=31%  Similarity=0.516  Sum_probs=166.7

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 025859           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (247)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~  102 (247)
                      .|++||++++++|++|+++++...|..|+++|.+++.|+++++|++|+|++  +||||.+|++.+++          +|+
T Consensus         2 ~K~~lRk~~~~~R~~ls~~~~~~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~l~~----------~k~   69 (194)
T d1soua_           2 LKSELRKKVLHKRINLSEEERRRLSEKVISNLKSLPEFKKSKKVALYCPIK--GEVDLTPLFPEVLK----------EKE   69 (194)
T ss_dssp             CHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHCHHHHHCCEEEECCCCS--SCCCCGGGHHHHHH----------HSE
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHHhhcCCEEEEEeccc--ccCChHHHHHHHhh----------ccc
Confidence            489999999999999999999999999999999999999999999999998  79999999999986          578


Q ss_pred             EEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhh
Q 025859          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDT  182 (247)
Q Consensus       103 v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR  182 (247)
                      |++|++.++  .|.|+.|.+.+.|..|.|||+||....         ...+..+|+|||||||||++|+|||||||||||
T Consensus        70 v~lP~i~~~--~m~~~~~~~~~~l~~~~~gI~EP~~~~---------~~~~~~iDlilVP~lafD~~G~RlG~G~GyYDR  138 (194)
T d1soua_          70 LILPKVEGN--EISLYRVHSPACLGVGAFGIMEPVEGE---------RVNPEDVDFIAVPGVAFDLEGYRLGFGKGYYDR  138 (194)
T ss_dssp             EEEEEESSS--SEEEEEESSSCCCEECSSSCEECCSSE---------EECGGGCSEEEECCSCBCSSSCBCCSCCSSHHH
T ss_pred             ccccccchh--ceeeeccCCCcccccccccccCCCccc---------cccccccceehhhHHHHhhcCCccccCCEeHHH
Confidence            999999754  599999999899999999999996421         123457899999999999999999999999999


Q ss_pred             hhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEcccc
Q 025859          183 FLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPISAA  240 (247)
Q Consensus       183 ~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~~~  240 (247)
                      ||+.++          +.+|||||++|+++.  +|+|+||++||+||||+|+++|...
T Consensus       139 ~L~~~~----------~~~igl~~~~Q~~~~--ip~e~hD~~ld~iiTe~~i~~~~~~  184 (194)
T d1soua_         139 LLKRVK----------GLKVGVAYSFQVFER--LPRDAWDIPVDVLVTEKNVRRLRDG  184 (194)
T ss_dssp             HHHHCC----------SEEEEECCGGGBCSC--CCCCSCCCCCSEEECSSCEEESCCC
T ss_pred             hhhccC----------CCEEEEEecceecCC--CCCCCcCeECCEEEEccceEEecCC
Confidence            999863          468999999999998  9999999999999999999999664

>d1wkca_ c.124.1.6 (A:) Hypothetical protein TTHA1611 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: Hypothetical protein TTHA1611
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=1.6e-52  Score=346.58  Aligned_cols=172  Identities=27%  Similarity=0.479  Sum_probs=145.0

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCccCCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCcE
Q 025859           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFKSSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRKK  102 (247)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk~  102 (247)
                      +|++||++++++|++++.+   +.|.+|+++|.++..++++++|++|+|++  +||||.++++.            .||+
T Consensus         2 ~K~~lRk~~r~~r~~l~~~---~~s~~i~~~l~~~~~~~~~~~I~~Y~p~~--~Evdt~~li~~------------~~k~   64 (175)
T d1wkca_           2 TKAELRRRARAAWRRLDLK---ALSRAVGAALLPWLRERGFRHILLYHPLP--HELNLLPLMEA------------YPAR   64 (175)
T ss_dssp             CHHHHHHHHHHHHHTSCHH---HHHHHHHHHHHHHHHHHTCCEEECCCCCT--TCCCCTTHHHH------------SCCE
T ss_pred             CHHHHHHHHHHHHhcCCHH---HHHHHHHHHHHHHHHhcCCCEEEEEEeEC--CccCcchhhhc------------ccce
Confidence            4999999999999999865   46778999999988899999999999998  79999999864            4799


Q ss_pred             EEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHhh
Q 025859          103 LYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYDT  182 (247)
Q Consensus       103 v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYDR  182 (247)
                      |+||++...  .|.|+.|   ++|++|.|||+||....          .....+|+|||||||||++|+|||||||||||
T Consensus        65 v~lP~i~~~--~l~~~~~---~~l~~~~~gI~EP~~~~----------~~~~~~DliivP~vafD~~G~RlG~G~GyYDR  129 (175)
T d1wkca_          65 YYLPKVAGK--GLTVHPF---GPLAPGPFGLLEPTTPP----------EDPRVLDLVVVPGLAFDREGYRLGHGQGFYDR  129 (175)
T ss_dssp             EEEEEEETT--EEEEEES---CCBC-------CBCSCC----------BCGGGCSEEEECCSEEETTSCEECCSSCHHHH
T ss_pred             eeeeccccc--ceeecch---hhcchhhhhcccccccc----------cccccccEEEeeehheeecCcccccCcchHHH
Confidence            999999864  4888776   56999999999997531          12346899999999999999999999999999


Q ss_pred             hhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCCcEEEcc
Q 025859          183 FLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPSGVIPIS  238 (247)
Q Consensus       183 ~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~~ii~~~  238 (247)
                      ||+.++          +.+||+||++|+++.  +|+|+||++||+||||+|++++.
T Consensus       130 ~L~~~~----------~~~igl~~~~q~~~~--ip~e~hDi~ld~iiTe~gi~~~k  173 (175)
T d1wkca_         130 FLKEVR----------AATVGVVPQALLFPA--LPRDPWDVPVDHLATEAGVEAVK  173 (175)
T ss_dssp             HHHHCC----------SEEEEECCGGGEESC--CCCCTTCCCCSEEEETTEEEECC
T ss_pred             HHhhcC----------CCEEEEEehhheeCC--CCCCcccccCCEEEeCcccEEec
Confidence            999763          468999999999998  99999999999999999999986

>d1sbqa_ c.124.1.6 (A:) 5,10-methenyltetrahydrofolate synthetase homolog MPN348 {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: Methenyltetrahydrofolate synthetase
domain: 5,10-methenyltetrahydrofolate synthetase homolog MPN348
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=100.00  E-value=1.2e-47  Score=313.92  Aligned_cols=162  Identities=26%  Similarity=0.442  Sum_probs=138.4

Q ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCcCcc-CCCeEEEEeeCCCCCCCChHHHHHHHHhCCCCCCCCCCCc
Q 025859           23 QKRILRSQVRKTLKSMDPSLRSHEDNAIQKIVLEAPWFK-SSQRLCAYISCSALREVDTSKLLSQILQIPNADGDTKTRK  101 (247)
Q Consensus        23 ~K~~LR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~-~a~~I~~Y~~~~~~~Evdt~~li~~~l~~~~~~~~~~~gk  101 (247)
                      .|++||++++++|++++++++...|..|+++|.++..+. .+++|++|+|++  +|+||.+++..++..        .++
T Consensus         2 ~K~~lR~~~~~~R~~l~~~~~~~~s~~i~~~l~~~~~~~~~~~~I~~Y~p~~--~Evd~~~l~~~~l~~--------~~~   71 (164)
T d1sbqa_           2 DKNALRKQILQKRMALSTIEKSHLDQKINQKLVAFLTPKPCIKTIALYEPIK--NEVTFVDFFFEFLKI--------NQI   71 (164)
T ss_dssp             CHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHTTCTTCCEEECCCCCT--TSCCCCHHHHHHHHH--------TTC
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhhhhhhcCEEEEEeccC--CcccchHHHHHHHHc--------CCe
Confidence            499999999999999999999999999999998865554 468999999998  799999999888761        345


Q ss_pred             EEEEeeEeCCCCceEEEEccCCcccccccCCccCCCCCCCCCCchhhhcccCCCccEEEEecceecCCCCccccCCchHh
Q 025859          102 KLYVPRVEDKNSHMRMFHISSIDDLIANSMNILEPAPVDADGNEREDVMQANEPVDLFLLPGLAFDRSGRRLGRGGGYYD  181 (247)
Q Consensus       102 ~v~lP~~~~~~~~m~f~~~~~~~~L~~g~~gI~EP~~~~~~~~~~~~~~~~~~~iDlilVPglAfD~~G~RLG~GgGyYD  181 (247)
                      ++++|++..+ ..|.|..         ..+|+.||.                 .+|+|||||||||++|+||||||||||
T Consensus        72 ~~~~P~i~~~-~~~~~~~---------~~~~~~eP~-----------------~iDliivP~lafD~~G~RLGyGgGyYD  124 (164)
T d1sbqa_          72 RAVYPKVISD-TEIIFID---------QETNTFEPN-----------------QIDCFLIPLVGFNKDNYRLGFGKGYYD  124 (164)
T ss_dssp             EEEEEEECSS-SCEEEEC---------TTCCEECGG-----------------GCCEEEEECSEECTTCCEECCSSCHHH
T ss_pred             EEEEeeccCc-ccceecc---------ccccccCCc-----------------ccCEEEeeeheeeeecCccccccChHH
Confidence            8999999765 3576654         346888873                 369999999999999999999999999


Q ss_pred             hhhhhhhhHHhhhccCCccEEEEeeccccccCCCCCCCCCCccCCEEEeCC
Q 025859          182 TFLKKYQELAKERNWRQPLFVALSYSLQIMDEGIISATPKDMPVDALVSPS  232 (247)
Q Consensus       182 R~L~~~~~~~~~~~~~~~~~igl~~~~Q~~d~~~lP~e~hDi~ld~iiTe~  232 (247)
                      |||+.++.        .+.+|||||++|+++   +|.|+||++||+||||+
T Consensus       125 R~L~~~~~--------~~~~igla~~~Q~~~---~~~e~hDi~ld~iiTek  164 (164)
T d1sbqa_         125 RYLMQLTR--------QQPKIGIAYSFQKGD---FLADPWDVQLDLIINDE  164 (164)
T ss_dssp             HHGGGCCS--------CCCEEEEECGGGBCC---CCCCTTSCCCSEEEECC
T ss_pred             HHHHhcCC--------CCCEEEEEehhhccC---CCCCcccccCCEEeCCC
Confidence            99998742        356899999999886   45699999999999996