Citrus Sinensis ID: 027757

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------22
Protein Sequence
MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ
Secondary Structure (PSIPRED)
cccccccEEEccccccccEEEEEEEEEEccccccccccccEEEEEccccccHHHHHHHHHcccccEEcccccccccEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEcccccccccccccHHHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
cccccccEEEEcccccccEEEEEEEEEcccHHHcccccccEEEEEccccccHHHHHHHHHcccHHccccccccccEEEEEEEEcccEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHccEEEEEEEccccccHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
milpgsnivvgpyaghsqiKEVEFVKssgrakdcpkddrpefailgrsnvgkSSLINALVRKKELaltskkpgktqLINHFLvnkswyivdlpgygfakapdvtrmdwssftkgyflnreSLVGVLLLIdasvppqkidldcanwlgrnnipltfVFTKcdkmkvakgrrpdenIKSFQQLIRenyphhppwimtssvtglgRDELLLHMSQLRNYWDQ
Flexible Loop (DISEMBL)
milpgsnivvgpyaghsqiKEVEFvkssgrakdcpkddrpefailgrsnvgkssliNALVRKKELaltskkpgktqliNHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKmkvakgrrpdeNIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ
Low Complexity Region (SEG)
MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ
Disordered region (IsUnstruct)
*******IVVGPYAGH**************************AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAK*******IKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW**
Disordered Region (DISOPRED)
*****SNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK*********NIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD*
Disordered Region (DISEMBL)
MILPGSNIVVGPYAGHSQIKEVEFV**********KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ
Disordered Region (DISPRO)
*ILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	219	2.2.26 [Sep-21-2011]
O81004	300	GTP-binding protein At2g2	yes	no	1.0	0.73	0.867	1e-115
A0M537	198	Probable GTP-binding prot	yes	no	0.890	0.984	0.444	1e-46
Q64UN4	201	Probable GTP-binding prot	yes	no	0.881	0.960	0.464	1e-46
Q5LDL2	201	Probable GTP-binding prot	yes	no	0.881	0.960	0.464	1e-46
A6LBY4	200	Probable GTP-binding prot	yes	no	0.890	0.975	0.459	3e-46
A5FIZ1	210	Probable GTP-binding prot	yes	no	0.881	0.919	0.456	5e-46
Q7MX68	201	Probable GTP-binding prot	yes	no	0.881	0.960	0.464	1e-45
B2RL89	201	Probable GTP-binding prot	yes	no	0.881	0.960	0.464	1e-45
Q8A8T4	202	Probable GTP-binding prot	yes	no	0.881	0.955	0.448	4e-45
A6L4J3	200	Probable GTP-binding prot	yes	no	0.881	0.965	0.428	6e-44

>sp|O81004|Y2287_ARATH GTP-binding protein At2g22870 OS=Arabidopsis thaliana GN=EMB2001 PE=2 SV=2

 Score =  412 bits (1059), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 190/219 (86%), Positives = 206/219 (94%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M+LPGSNIV+GP+AGHSQIKEVEFVKSS RA+DCPKDDRPE AILGRSNVGKSSLIN LV
Sbjct: 82  MVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAILGRSNVGKSSLINCLV 141

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           RKKE+ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK  D  + DWS+FTKGYFLNR+
Sbjct: 142 RKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVSDAAKTDWSAFTKGYFLNRD 201

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           SLV VLLLIDASVPPQKIDLDCANWLGRNN+P+TFVFTKCDKMK  KG+RPDENIK+FQQ
Sbjct: 202 SLVCVLLLIDASVPPQKIDLDCANWLGRNNVPMTFVFTKCDKMKATKGKRPDENIKAFQQ 261

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           +IREN+  HPPWI+TSSV+GLGRDELLLHMSQLRNYWDQ
Sbjct: 262 IIRENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYWDQ 300

Arabidopsis thaliana (taxid: 3702)

>sp|A0M537|ENGB_GRAFK Probable GTP-binding protein EngB OS=Gramella forsetii (strain KT0803) GN=engB PE=3 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 88/198 (44%), Positives = 130/198 (65%), Gaps = 3/198 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +IK  EFV S+ +   CP    PE+A +GRSNVGKSSLIN L  +K LA TS KPGKTQL
Sbjct: 2   KIKTAEFVISNSKVDHCPNSTLPEYAFIGRSNVGKSSLINMLTGRKSLAKTSAKPGKTQL 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHFL+N +W++VDLPGYG+A+    T+  +  F   YF  RE ++   +LID+   PQ 
Sbjct: 62  INHFLINNNWHLVDLPGYGYAQVSKSTKKVFQKFITAYFKKREQMICAFVLIDSRHKPQP 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           ID++   WLG +NIP   +FTK DK+   K +  D+NI++++  + E++   P + +TS+
Sbjct: 122 IDMEFMQWLGEHNIPFCIIFTKADKL---KPKILDKNIENYKNEMLESWVEMPEYFITSA 178

Query: 198 VTGLGRDELLLHMSQLRN 215
            + LG+D++L ++  + N
Sbjct: 179 TSKLGQDDILDYIEGINN 196

Necessary for normal cell division and for the maintenance of normal septation.

Gramella forsetii (strain KT0803) (taxid: 411154)

>sp|Q64UN4|ENGB_BACFR Probable GTP-binding protein EngB OS=Bacteroides fragilis (strain YCH46) GN=engB PE=3 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +I   EFV S+   K CP    PE+A +GRSNVGKSSLIN L  +K LA+TS  PGKT L
Sbjct: 2   EITNAEFVISNTDVKKCPAGTFPEYAFIGRSNVGKSSLINMLTGRKGLAMTSATPGKTML 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHFL+N SWY+VDLPGYG+A+     +    +  + Y L RE +  + +LID+ + PQK
Sbjct: 62  INHFLINNSWYLVDLPGYGYARRGQKGQEQIRTIIEDYILEREQMTNLFVLIDSRLEPQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           IDL+   WLG N IP   +FTK DK+   KG R   NI ++ + +R+ +   PP+ +TSS
Sbjct: 122 IDLEFMEWLGENGIPFAIIFTKADKL---KGGRLKINISAYLRELRKQWEELPPYFITSS 178

Query: 198 VTGLGRDELLLHMSQL 213
              LGR E+L ++  +
Sbjct: 179 EERLGRTEVLNYIESI 194

Necessary for normal cell division and for the maintenance of normal septation.

Bacteroides fragilis (strain YCH46) (taxid: 295405)

>sp|Q5LDL2|ENGB_BACFN Probable GTP-binding protein EngB OS=Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) GN=engB PE=3 SV=1

 Score =  186 bits (472), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +I   EFV S+   K CP    PE+A +GRSNVGKSSLIN L  +K LA+TS  PGKT L
Sbjct: 2   EITNAEFVISNTDVKKCPAGTFPEYAFIGRSNVGKSSLINMLTGRKGLAMTSATPGKTML 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHFL+N SWY+VDLPGYG+A+     +    +  + Y L RE +  + +LID+ + PQK
Sbjct: 62  INHFLINNSWYLVDLPGYGYARRGQKGQKQIRTIIEDYILEREQMTNLFVLIDSRLEPQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           IDL+   WLG N IP   +FTK DK+   KG R   NI ++ + +R+ +   PP+ +TSS
Sbjct: 122 IDLEFMEWLGENGIPFAIIFTKADKL---KGGRLKINISAYLRELRKQWEELPPYFITSS 178

Query: 198 VTGLGRDELLLHMSQL 213
              LGR E+L ++  +
Sbjct: 179 EERLGRTEVLNYIESI 194

Necessary for normal cell division and for the maintenance of normal septation.

Bacteroides fragilis (strain ATCC 25285 / NCTC 9343) (taxid: 272559)

>sp|A6LBY4|ENGB_PARD8 Probable GTP-binding protein EngB OS=Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) GN=engB PE=3 SV=1

 Score =  184 bits (468), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 3/198 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +IK  EFV S+   + CP+ ++PE+A +GRSNVGKSSLIN L  KK LA+TS+ PGKT L
Sbjct: 2   EIKSAEFVISNTDVRKCPEGNKPEYAFIGRSNVGKSSLINMLTNKKGLAMTSQTPGKTLL 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHFL+N  WY+VDLPGYGFA+     R       + Y L+RE L  + +L+D     QK
Sbjct: 62  INHFLINNEWYLVDLPGYGFAQRGKENREQLKRIIENYILDREQLTNLFVLLDCRHEAQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           IDL+   WLG + +P + +FTK D  K++KGR   EN+K +   + E +   PP  ++SS
Sbjct: 122 IDLEFMEWLGESGVPFSIIFTKID--KISKGRLK-ENLKVYTDKLLETWEELPPIFLSSS 178

Query: 198 VTGLGRDELLLHMSQLRN 215
               GRDE+L ++  + N
Sbjct: 179 EKKEGRDEILDYIESINN 196

Necessary for normal cell division and for the maintenance of normal septation.

Parabacteroides distasonis (strain ATCC 8503 / DSM 20701 / NCTC 11152) (taxid: 435591)

>sp|A5FIZ1|ENGB_FLAJ1 Probable GTP-binding protein EngB OS=Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) GN=engB PE=3 SV=1

 Score =  184 bits (466), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 90/197 (45%), Positives = 128/197 (64%), Gaps = 4/197 (2%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +I   EF+ S+  A  CPKD  PE+A +GRSNVGKSSLIN +   K LA TS KPGKTQL
Sbjct: 2   KINTAEFIVSNSDAAKCPKDFLPEYAFIGRSNVGKSSLINMITNHKNLAKTSGKPGKTQL 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHF +N +W++VDLPGYG+AK    T+  +  F   YF NRE LV   +LID     QK
Sbjct: 62  INHFKINNNWFLVDLPGYGYAKVSKKTKSIFQQFITDYFENREQLVCAFVLIDIRHEAQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSF-QQLIRENYPHHPPWIMTS 196
           ID++  +++G + IP   +FTK D  K++KG + D +I ++ +Q+   N+   P + +TS
Sbjct: 122 IDIEFMSYMGESEIPFCIIFTKAD--KISKG-KIDSHIAAYRKQMYANNWAEMPQYFVTS 178

Query: 197 SVTGLGRDELLLHMSQL 213
           S   +G+DELL ++ ++
Sbjct: 179 STESIGKDELLTYIDEV 195

Necessary for normal cell division and for the maintenance of normal septation.

Flavobacterium johnsoniae (strain ATCC 17061 / DSM 2064 / UW101) (taxid: 376686)

>sp|Q7MX68|ENGB_PORGI Probable GTP-binding protein EngB OS=Porphyromonas gingivalis (strain ATCC BAA-308 / W83) GN=engB PE=3 SV=1

 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 125/196 (63%), Gaps = 3/196 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +IK+  FV S+   + CP    PE+A +GRSNVGKSSLIN L  +K LA+TS+KPGKTQL
Sbjct: 2   EIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQL 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHF+++ SWY+VDLPGYG+A+     R       + Y L RE L  + +LID    PQK
Sbjct: 62  INHFIIDDSWYLVDLPGYGYARLGASNRESLRRIIETYILCREQLSSLFVLIDCRHEPQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           IDL+   WLG N IP + VFTK DK+  +   R  EN ++++Q + E +   PP  +TSS
Sbjct: 122 IDLEFLQWLGENGIPFSIVFTKADKLSFS---RLKENTEAYKQKLLETWEELPPVFITSS 178

Query: 198 VTGLGRDELLLHMSQL 213
               G++ELL ++  +
Sbjct: 179 EKKTGKEELLDYIDSI 194

Necessary for normal cell division and for the maintenance of normal septation.

Porphyromonas gingivalis (strain ATCC BAA-308 / W83) (taxid: 242619)

>sp|B2RL89|ENGB_PORG3 Probable GTP-binding protein EngB OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=engB PE=3 SV=1

 Score =  182 bits (463), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 125/196 (63%), Gaps = 3/196 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +IK+  FV S+   + CP    PE+A +GRSNVGKSSLIN L  +K LA+TS+KPGKTQL
Sbjct: 2   EIKKAAFVISNTDVRKCPDTRLPEYAFIGRSNVGKSSLINMLTGQKGLAMTSQKPGKTQL 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHF+++ SWY+VDLPGYG+A+     R       + Y L RE L  + +LID    PQK
Sbjct: 62  INHFIIDDSWYLVDLPGYGYARLGASNRESLRRIIETYILCREQLSSLFVLIDCRHEPQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           IDL+   WLG N IP + VFTK DK+  +   R  EN ++++Q + E +   PP  +TSS
Sbjct: 122 IDLEFLQWLGENGIPFSIVFTKADKLSFS---RLKENTEAYKQKLLETWEELPPVFITSS 178

Query: 198 VTGLGRDELLLHMSQL 213
               G++ELL ++  +
Sbjct: 179 EKKTGKEELLDYIDSI 194

Necessary for normal cell division and for the maintenance of normal septation.

Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) (taxid: 431947)

>sp|Q8A8T4|ENGB_BACTN Probable GTP-binding protein EngB OS=Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=engB PE=3 SV=1

 Score =  181 bits (458), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 88/196 (44%), Positives = 124/196 (63%), Gaps = 3/196 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +I   EFV S+   K CP    PE+A +GRSNVGKSSLIN L  +K LA+TS  PGKT L
Sbjct: 2   EITSAEFVISNTDVKKCPTGVFPEYAFIGRSNVGKSSLINMLTARKGLAMTSATPGKTML 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHFL+N+SWY+VDLPGYG+A+     +    +  + Y L RE +  + +LID+ + PQK
Sbjct: 62  INHFLINQSWYLVDLPGYGYARRGQKGKDQIRTIIEDYILEREQMTNLFVLIDSRLEPQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           IDL+   WLG N IP + +FTK DK+   KG R   NI ++ + + + +   PP+ ++SS
Sbjct: 122 IDLEFMEWLGENGIPFSIIFTKADKL---KGGRLKMNINNYLRELSKEWEELPPYFISSS 178

Query: 198 VTGLGRDELLLHMSQL 213
               GR E+L ++  +
Sbjct: 179 ENRTGRTEILDYIENI 194

Necessary for normal cell division and for the maintenance of normal septation.

Bacteroides thetaiotaomicron (strain ATCC 29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) (taxid: 226186)

>sp|A6L4J3|ENGB_BACV8 Probable GTP-binding protein EngB OS=Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) GN=engB PE=3 SV=1

 Score =  177 bits (448), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 84/196 (42%), Positives = 122/196 (62%), Gaps = 3/196 (1%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           +I   EFV S+ + + CP+D+ PE+A +GRSNVGKSSLIN L ++ +LA+TS  PGKT L
Sbjct: 2   EILSAEFVVSNTKVEKCPQDNLPEYAFIGRSNVGKSSLINMLAKRPKLAMTSSTPGKTLL 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           INHFL+NK WY+VDLPGYG+A              + Y L RE +  + +LID  + PQK
Sbjct: 62  INHFLINKEWYLVDLPGYGYASRGKKQVEKIQQIIEDYILEREQMTNLFVLIDCRLEPQK 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           IDL+   WLG N +P + +FTK DK+   K +   +N+  + + + E +   PP  ++SS
Sbjct: 122 IDLEFMEWLGENGVPFSIIFTKADKLTNGKVK---DNVNKYLKKLTEQWEELPPHFVSSS 178

Query: 198 VTGLGRDELLLHMSQL 213
               GR E+L ++  +
Sbjct: 179 EKKTGRQEILDYIDSI 194

Necessary for normal cell division and for the maintenance of normal septation.

Bacteroides vulgatus (strain ATCC 8482 / DSM 1447 / NCTC 11154) (taxid: 435590)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
255568647	296	GTP-binding protein engB, putative [Rici	1.0	0.739	0.890	1e-114
224095021	302	predicted protein [Populus trichocarpa]	1.0	0.725	0.894	1e-114
297821515	300	EMB2001 [Arabidopsis lyrata subsp. lyrat	1.0	0.73	0.863	1e-113
18400109	300	GTP-binding protein [Arabidopsis thalian	1.0	0.73	0.867	1e-113
449532169	219	PREDICTED: GTP-binding protein At2g22870	1.0	1.0	0.872	1e-112
356546231	305	PREDICTED: GTP-binding protein At2g22870	0.995	0.714	0.857	1e-112
356521366	301	PREDICTED: GTP-binding protein At2g22870	0.995	0.724	0.853	1e-111
297836256	300	EMB2001 [Arabidopsis lyrata subsp. lyrat	1.0	0.73	0.849	1e-110
242036437	310	hypothetical protein SORBIDRAFT_01g04217	1.0	0.706	0.826	1e-105
115451735	318	Os03g0232500 [Oryza sativa Japonica Grou	1.0	0.688	0.803	1e-104

>gi|255568647|ref|XP_002525297.1| GTP-binding protein engB, putative [Ricinus communis] gi|223535455|gb|EEF37125.1| GTP-binding protein engB, putative [Ricinus communis]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 195/219 (89%), Positives = 207/219 (94%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M+LPGSNIVVGPYAGHSQIKEVEFVKSS RA+DCP++DRPEFAILGRSNVGKSSLINALV
Sbjct: 78  MVLPGSNIVVGPYAGHSQIKEVEFVKSSSRARDCPREDRPEFAILGRSNVGKSSLINALV 137

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           RKKE+ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP   + DWSSFTKGYFLNRE
Sbjct: 138 RKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPASAQTDWSSFTKGYFLNRE 197

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           +LV VLLLIDASVPPQKIDLDCA+WLGRNNIPLTFVFTKCDKMK  K  RPDENI++FQ+
Sbjct: 198 TLVAVLLLIDASVPPQKIDLDCADWLGRNNIPLTFVFTKCDKMKGGKSTRPDENIRNFQE 257

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           LIR+NY  HPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ
Sbjct: 258 LIRQNYQEHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 296

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224095021|ref|XP_002310331.1| predicted protein [Populus trichocarpa] gi|222853234|gb|EEE90781.1| predicted protein [Populus trichocarpa]

 Score =  415 bits (1067), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 196/219 (89%), Positives = 206/219 (94%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           +ILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCP+DDRPEFAILGRSNVGKSSLIN L 
Sbjct: 84  IILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPRDDRPEFAILGRSNVGKSSLINVLA 143

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           RKKE+ALTSKKPGKTQLINHFLVNKSWY+VDLPGYGFAKAPD  RMDWSSFTKGYFLNRE
Sbjct: 144 RKKEVALTSKKPGKTQLINHFLVNKSWYLVDLPGYGFAKAPDSARMDWSSFTKGYFLNRE 203

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           +LV VLLLIDASVPPQKIDLDCANWLGRNNIP+T VFTKCDKMK  K  RPDENIK+FQ+
Sbjct: 204 TLVAVLLLIDASVPPQKIDLDCANWLGRNNIPMTLVFTKCDKMKGGKRTRPDENIKNFQE 263

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           L+R+NY  HP WIMTSSVTGLGRDELLLHMSQLRNYWDQ
Sbjct: 264 LMRQNYREHPAWIMTSSVTGLGRDELLLHMSQLRNYWDQ 302

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297821515|ref|XP_002878640.1| EMB2001 [Arabidopsis lyrata subsp. lyrata] gi|297324479|gb|EFH54899.1| EMB2001 [Arabidopsis lyrata subsp. lyrata]

 Score =  412 bits (1060), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 189/219 (86%), Positives = 207/219 (94%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M+LPGSNIV+GP+AGHSQIKEVEFVKSS RA+DCPKDDRPE AILGRSNVGKSSLIN LV
Sbjct: 82  MVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAILGRSNVGKSSLINCLV 141

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           RKKE+ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK  D  + DWS+FTKGYFLNR+
Sbjct: 142 RKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVSDAAKTDWSAFTKGYFLNRD 201

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           +LV +LLLIDASVPPQKIDLDCANWLGRNN+P+TFVFTKCDKMK AKG+RPDENIK+FQQ
Sbjct: 202 TLVCILLLIDASVPPQKIDLDCANWLGRNNVPMTFVFTKCDKMKAAKGKRPDENIKAFQQ 261

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           +IREN+  HPPWI+TSSV+GLGRDELLLHMSQLRNYWDQ
Sbjct: 262 IIRENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYWDQ 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18400109|ref|NP_565543.1| GTP-binding protein [Arabidopsis thaliana] gi|21903474|sp|O81004.2|Y2287_ARATH RecName: Full=GTP-binding protein At2g22870; AltName: Full=Protein EMBRYO DEFECTIVE 2001 gi|20197273|gb|AAC32434.2| putative nucleotide-binding protein [Arabidopsis thaliana] gi|21592880|gb|AAM64830.1| putative nucleotide-binding protein [Arabidopsis thaliana] gi|52354269|gb|AAU44455.1| hypothetical protein AT2G22870 [Arabidopsis thaliana] gi|55740571|gb|AAV63878.1| hypothetical protein At2g22870 [Arabidopsis thaliana] gi|330252273|gb|AEC07367.1| GTP-binding protein [Arabidopsis thaliana]

 Score =  412 bits (1059), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 190/219 (86%), Positives = 206/219 (94%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M+LPGSNIV+GP+AGHSQIKEVEFVKSS RA+DCPKDDRPE AILGRSNVGKSSLIN LV
Sbjct: 82  MVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAILGRSNVGKSSLINCLV 141

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           RKKE+ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK  D  + DWS+FTKGYFLNR+
Sbjct: 142 RKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVSDAAKTDWSAFTKGYFLNRD 201

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           SLV VLLLIDASVPPQKIDLDCANWLGRNN+P+TFVFTKCDKMK  KG+RPDENIK+FQQ
Sbjct: 202 SLVCVLLLIDASVPPQKIDLDCANWLGRNNVPMTFVFTKCDKMKATKGKRPDENIKAFQQ 261

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           +IREN+  HPPWI+TSSV+GLGRDELLLHMSQLRNYWDQ
Sbjct: 262 IIRENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYWDQ 300

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532169|ref|XP_004173055.1| PREDICTED: GTP-binding protein At2g22870-like [Cucumis sativus]

 Score =  410 bits (1055), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 191/219 (87%), Positives = 207/219 (94%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M+LPGSNIV+GPYAG S++KEVEFVKSS RA+DCPKD +PEFAILGRSNVGKSSLINALV
Sbjct: 1   MLLPGSNIVLGPYAGDSRVKEVEFVKSSARARDCPKDSKPEFAILGRSNVGKSSLINALV 60

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           RKKE+ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK  +  RMDWSSFTKGYF+NR+
Sbjct: 61  RKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVSETARMDWSSFTKGYFMNRD 120

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           +LV VLLLIDASVPPQKIDLDCANWLGRNNIP+TFVFTKCDKMKV+KG+RPDENI+ FQQ
Sbjct: 121 TLVAVLLLIDASVPPQKIDLDCANWLGRNNIPMTFVFTKCDKMKVSKGKRPDENIREFQQ 180

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           LIR+NY  HP WIMTSSVTGLGRDELLLHMSQLRNYWDQ
Sbjct: 181 LIRQNYKVHPSWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546231|ref|XP_003541533.1| PREDICTED: GTP-binding protein At2g22870-like [Glycine max]

 Score =  409 bits (1051), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 187/218 (85%), Positives = 206/218 (94%)

Query: 2   ILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVR 61
           +LPGSNI VGPYAG S+IK+V+FVKSS RA+DCPKDD PEFA+LGRSNVGKSSLIN+LVR
Sbjct: 88  VLPGSNIAVGPYAGDSRIKDVQFVKSSARARDCPKDDLPEFAVLGRSNVGKSSLINSLVR 147

Query: 62  KKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121
           KKE+ALTSKKPGKTQLINHFLVNKSWY+VDLPGYGFAKAP+  + DWSSFTKGYFLNR +
Sbjct: 148 KKEIALTSKKPGKTQLINHFLVNKSWYLVDLPGYGFAKAPEAAKTDWSSFTKGYFLNRST 207

Query: 122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181
           LV VLLLIDASVPPQK+DLDCANWLGRNNIP+TFVFTKCDKMKVAKG+RPDENI+ FQ+L
Sbjct: 208 LVAVLLLIDASVPPQKVDLDCANWLGRNNIPITFVFTKCDKMKVAKGKRPDENIRDFQEL 267

Query: 182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           IR+NY  HPPWIMTSSVTG+GRDELLLHMSQLRNYWDQ
Sbjct: 268 IRQNYKQHPPWIMTSSVTGMGRDELLLHMSQLRNYWDQ 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521366|ref|XP_003529327.1| PREDICTED: GTP-binding protein At2g22870-like [Glycine max]

 Score =  407 bits (1047), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 186/218 (85%), Positives = 205/218 (94%)

Query: 2   ILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVR 61
           +LPGSNI VGPYAG S IK+V+FVKSS RA+DCPKD+RPEFA+LGRSNVGKSSLIN+LVR
Sbjct: 84  VLPGSNIAVGPYAGDSHIKDVQFVKSSARARDCPKDNRPEFAVLGRSNVGKSSLINSLVR 143

Query: 62  KKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121
           KKE+ALTSKKPGKTQLINHFLVNKSWY+VDLPGYGFAKAP+  + DWSSFTKGYFLN+ +
Sbjct: 144 KKEIALTSKKPGKTQLINHFLVNKSWYLVDLPGYGFAKAPEAAKTDWSSFTKGYFLNKST 203

Query: 122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181
           LV VLLLIDASVPPQKIDLDCANWLGRNNIP+TFVFTKCDKMKVAKG+RPDENI+ FQ+L
Sbjct: 204 LVAVLLLIDASVPPQKIDLDCANWLGRNNIPITFVFTKCDKMKVAKGKRPDENIRDFQEL 263

Query: 182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           IR+NY  HPPWIMTSS TG+GRDELLLHMSQLRNYWDQ
Sbjct: 264 IRQNYKQHPPWIMTSSATGMGRDELLLHMSQLRNYWDQ 301

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836256|ref|XP_002886010.1| EMB2001 [Arabidopsis lyrata subsp. lyrata] gi|297331850|gb|EFH62269.1| EMB2001 [Arabidopsis lyrata subsp. lyrata]

 Score =  404 bits (1037), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 186/219 (84%), Positives = 204/219 (93%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M+LPGSNIV+GP+AGHSQIKEVEFVKSS RA+DC KDDRPE AILGRSNVGKSSLIN LV
Sbjct: 82  MVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCTKDDRPEIAILGRSNVGKSSLINCLV 141

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           RKKE+ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK  D  + DWS+FTKGYFLNR+
Sbjct: 142 RKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVSDAAKTDWSAFTKGYFLNRD 201

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           +LV VLLLIDASVPPQKIDLDCANWLGRNN+ +TFVFTKCDKMK  KG+RPDENIK+FQQ
Sbjct: 202 TLVCVLLLIDASVPPQKIDLDCANWLGRNNVQMTFVFTKCDKMKATKGKRPDENIKAFQQ 261

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           +I+EN+  HPPWI+TSSV+GLGRDELLLHMSQLRNYWDQ
Sbjct: 262 IIKENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYWDQ 300

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242036437|ref|XP_002465613.1| hypothetical protein SORBIDRAFT_01g042170 [Sorghum bicolor] gi|241919467|gb|EER92611.1| hypothetical protein SORBIDRAFT_01g042170 [Sorghum bicolor]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 181/219 (82%), Positives = 195/219 (89%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M++PGSNIVVGPYAG +++KE EFVKSS RA+DCPKDDRPEFA+LGRSNVGKSSLINAL 
Sbjct: 89  MVIPGSNIVVGPYAGDARVKEAEFVKSSARARDCPKDDRPEFAVLGRSNVGKSSLINALT 148

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           R+KE ALTSKKPGKTQ INHFLVNKSWY+VDLPGYGFA A    RMDWSSFTKGYFLNR+
Sbjct: 149 RRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPGYGFAAASQSARMDWSSFTKGYFLNRD 208

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           +LVGVLLLIDAS+PPQKIDLDCANWLGRNNI LTFVFTKCDK+K  KG RPDENIK FQ+
Sbjct: 209 TLVGVLLLIDASIPPQKIDLDCANWLGRNNIGLTFVFTKCDKVKKGKGGRPDENIKQFQE 268

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
            I   YP  PPWIMTSSVTGLGRD LLLHMSQLRNYWD 
Sbjct: 269 TISGLYPDPPPWIMTSSVTGLGRDGLLLHMSQLRNYWDN 307

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115451735|ref|NP_001049468.1| Os03g0232500 [Oryza sativa Japonica Group] gi|108707011|gb|ABF94806.1| GTP-binding protein, putative, expressed [Oryza sativa Japonica Group] gi|113547939|dbj|BAF11382.1| Os03g0232500 [Oryza sativa Japonica Group] gi|215766877|dbj|BAG99105.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  382 bits (981), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 176/219 (80%), Positives = 193/219 (88%)

Query: 1   MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
           M++P SNIVVGPYAG S++KE EFVKSS RA+DCPKDDRPEFA+LGRSNVGKSSLINAL+
Sbjct: 94  MVIPASNIVVGPYAGDSRVKEAEFVKSSARARDCPKDDRPEFAVLGRSNVGKSSLINALI 153

Query: 61  RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
           R+KE ALTSKKPGKTQ INHFLVNKSWY+VDLPGYGFA A    R DWSSFTKGYFLNR+
Sbjct: 154 RRKEAALTSKKPGKTQTINHFLVNKSWYLVDLPGYGFAAASQSARTDWSSFTKGYFLNRD 213

Query: 121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
           +LVGVLLL+DAS+PPQKID+DCANWLGRNNI LT+VFTKCDK K  KG RP+ENIK FQ+
Sbjct: 214 TLVGVLLLVDASIPPQKIDIDCANWLGRNNIGLTYVFTKCDKSKKGKGGRPEENIKEFQE 273

Query: 181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
            I   YP  PPWIMTSSVTGLGRD LLLHMSQLRNYWD 
Sbjct: 274 TISSLYPEPPPWIMTSSVTGLGRDGLLLHMSQLRNYWDN 312

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	219
TAIR|locus:2059221	300	EMB2001 "embryo defective 2001	1.0	0.73	0.867	3.6e-105
TAIR|locus:2144271	318	AT5G11480 [Arabidopsis thalian	0.986	0.679	0.623	3.1e-74
UNIPROTKB|Q2GGM7	200	engB "Probable GTP-binding pro	0.863	0.945	0.415	1.6e-29
TIGR_CMR|ECH_0595	200	ECH_0595 "GTP-binding protein	0.863	0.945	0.415	1.6e-29
UNIPROTKB|Q748I9	206	engB "Probable GTP-binding pro	0.684	0.728	0.467	2.1e-29
TIGR_CMR|GSU_3013	206	GSU_3013 "GTP-binding protein"	0.684	0.728	0.467	2.1e-29
UNIPROTKB|P38424	195	engB "Probable GTP-binding pro	0.835	0.938	0.377	5e-28
UNIPROTKB|Q81LC2	198	engB "Probable GTP-binding pro	0.835	0.924	0.356	8.2e-28
TIGR_CMR|BA_4701	198	BA_4701 "GTP-binding protein"	0.835	0.924	0.356	8.2e-28
UNIPROTKB|Q9KVN0	220	engB "Probable GTP-binding pro	0.835	0.831	0.368	8.4e-26

TAIR|locus:2059221 EMB2001 "embryo defective 2001" [Arabidopsis thaliana (taxid:3702)]

 Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
 Identities = 190/219 (86%), Positives = 206/219 (94%)

Query:     1 MILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALV 60
             M+LPGSNIV+GP+AGHSQIKEVEFVKSS RA+DCPKDDRPE AILGRSNVGKSSLIN LV
Sbjct:    82 MVLPGSNIVIGPFAGHSQIKEVEFVKSSARARDCPKDDRPEIAILGRSNVGKSSLINCLV 141

Query:    61 RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE 120
             RKKE+ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK  D  + DWS+FTKGYFLNR+
Sbjct:   142 RKKEVALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKVSDAAKTDWSAFTKGYFLNRD 201

Query:   121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ 180
             SLV VLLLIDASVPPQKIDLDCANWLGRNN+P+TFVFTKCDKMK  KG+RPDENIK+FQQ
Sbjct:   202 SLVCVLLLIDASVPPQKIDLDCANWLGRNNVPMTFVFTKCDKMKATKGKRPDENIKAFQQ 261

Query:   181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
             +IREN+  HPPWI+TSSV+GLGRDELLLHMSQLRNYWDQ
Sbjct:   262 IIRENFKVHPPWILTSSVSGLGRDELLLHMSQLRNYWDQ 300

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2144271 AT5G11480 [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 136/218 (62%), Positives = 171/218 (78%)

Query:     2 ILPGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVR 61
             IL GSNIV+  YA  +Q+ + ++VKSS + +DCP D  PEFA++GRSNVGKSSL+N+LVR
Sbjct:    98 ILKGSNIVLSKYARDAQVVQADYVKSSVKTEDCPADGLPEFALVGRSNVGKSSLLNSLVR 157

Query:    62 KKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121
             +K LALTSKKPGKTQ INHF +N  WY+VDLPGYG+A AP   + DW+ FTK YFLNR +
Sbjct:   158 RKRLALTSKKPGKTQCINHFRINDKWYLVDLPGYGYASAPHELKQDWNKFTKDYFLNRST 217

Query:   122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAK--GRRPDENIKSFQ 179
             LV V LL+DAS+P + IDL+ A+WLG+N +P+T +FTKCDK K  K  G++P+ NIK FQ
Sbjct:   218 LVSVFLLVDASIPVKPIDLEYASWLGQNQVPMTLIFTKCDKRKKKKNGGKKPEANIKEFQ 277

Query:   180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW 217
              LI+  +   PPWIMTSSVT  GRDE+LLHM+QLRNYW
Sbjct:   278 DLIQGFFETTPPWIMTSSVTNQGRDEILLHMAQLRNYW 315

GO:0000917 "barrier septum assembly" evidence=IEA

GO:0005525 "GTP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0006364 "rRNA processing" evidence=RCA

GO:0006399 "tRNA metabolic process" evidence=RCA

GO:0009658 "chloroplast organization" evidence=RCA

UNIPROTKB|Q2GGM7 engB "Probable GTP-binding protein EngB" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 81/195 (41%), Positives = 112/195 (57%)

Query:    19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
             + + EF+  +   K  P    PE AI GRSNVGKSSLINA+   K+ A TS KPG T+ I
Sbjct:     7 MSKCEFMIGATHIKSLPDFSIPEIAIAGRSNVGKSSLINAITNNKKNAKTSSKPGCTKQI 66

Query:    79 NHFLVNKSWYI-VDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
             N +L+NK + + VDLPGYG++KA   T  ++    + Y LN  +L+ V+LLIDA V  ++
Sbjct:    67 NFYLINKDFMVLVDLPGYGYSKADKTTINNYLCLMEYYLLNSRNLLKVILLIDAKVGFKE 126

Query:   138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
             IDLD  NWL  + I    V TK DK+K       D N+   + L  +   +  P I TSS
Sbjct:   127 IDLDFINWLELHQIHYQLVLTKIDKIKK---EMLDVNVNYIKNLNLDFIMY--PIISTSS 181

Query:   198 VTGLGRDELLLHMSQ 212
                 G +EL+  ++Q
Sbjct:   182 QCKQGIEELIYEIAQ 196

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|ECH_0595 ECH_0595 "GTP-binding protein EngB" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 81/195 (41%), Positives = 112/195 (57%)

Query:    19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
             + + EF+  +   K  P    PE AI GRSNVGKSSLINA+   K+ A TS KPG T+ I
Sbjct:     7 MSKCEFMIGATHIKSLPDFSIPEIAIAGRSNVGKSSLINAITNNKKNAKTSSKPGCTKQI 66

Query:    79 NHFLVNKSWYI-VDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
             N +L+NK + + VDLPGYG++KA   T  ++    + Y LN  +L+ V+LLIDA V  ++
Sbjct:    67 NFYLINKDFMVLVDLPGYGYSKADKTTINNYLCLMEYYLLNSRNLLKVILLIDAKVGFKE 126

Query:   138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
             IDLD  NWL  + I    V TK DK+K       D N+   + L  +   +  P I TSS
Sbjct:   127 IDLDFINWLELHQIHYQLVLTKIDKIKK---EMLDVNVNYIKNLNLDFIMY--PIISTSS 181

Query:   198 VTGLGRDELLLHMSQ 212
                 G +EL+  ++Q
Sbjct:   182 QCKQGIEELIYEIAQ 196

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q748I9 engB "Probable GTP-binding protein EngB" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 71/152 (46%), Positives = 86/152 (56%)

Query:    19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
             I   EFV S  R +  P  D  E A +GRSNVGKSSLIN LV +K L  TS  PG+TQLI
Sbjct:     4 ITSAEFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLI 63

Query:    79 NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
             N F VN S  +VDLPGYGFA+ P   +  W    + Y   R  L  V+L++D    P + 
Sbjct:    64 NFFRVNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEE 123

Query:   139 DLDCANWLGRNNIPLTFVFTKCDKMKVAKGRR 170
             D     WL   +IP+  V TKCDK  V+K  R
Sbjct:   124 DRLMLQWLRAYDIPVLVVITKCDK--VSKNER 153

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|GSU_3013 GSU_3013 "GTP-binding protein" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
 Identities = 71/152 (46%), Positives = 86/152 (56%)

Query:    19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
             I   EFV S  R +  P  D  E A +GRSNVGKSSLIN LV +K L  TS  PG+TQLI
Sbjct:     4 ITSAEFVTSGTRPEHYPPGDLLEIAFVGRSNVGKSSLINVLVNRKSLVRTSSTPGRTQLI 63

Query:    79 NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
             N F VN S  +VDLPGYGFA+ P   +  W    + Y   R  L  V+L++D    P + 
Sbjct:    64 NFFRVNGSLMLVDLPGYGFARVPPEVKRQWGPMVETYLAGRSCLACVVLIVDVRRTPAEE 123

Query:   139 DLDCANWLGRNNIPLTFVFTKCDKMKVAKGRR 170
             D     WL   +IP+  V TKCDK  V+K  R
Sbjct:   124 DRLMLQWLRAYDIPVLVVITKCDK--VSKNER 153

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|P38424 engB "Probable GTP-binding protein EngB" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 71/188 (37%), Positives = 104/188 (55%)

Query:    18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
             ++ + E V S+ + +  P+   PE A+ GRSNVGKSS IN+L+ +K LA TS KPGKTQ 
Sbjct:     2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61

Query:    78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
             +N +++N   + VD+PGYGFAK     R  W    + Y   RE L  V+ ++D    P  
Sbjct:    62 LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121

Query:   138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
              D+    +L    IP+  + TK DK  + KG+  D++ K  +Q +  N       I+ SS
Sbjct:   122 DDVQMYEFLKYYGIPVIVIATKADK--IPKGKW-DKHAKVVRQTL--NIDPEDELILFSS 176

Query:   198 VTGLGRDE 205
              T  G+DE
Sbjct:   177 ETKKGKDE 184

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q81LC2 engB "Probable GTP-binding protein EngB" [Bacillus anthracis (taxid:1392)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 67/188 (35%), Positives = 107/188 (56%)

Query:    18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
             ++ + + V S+ + +  P  D PE A+ GRSNVGKSS IN ++ +K+L   S KPGKTQ 
Sbjct:     2 KVTKADIVISAVKPEQYPDGDLPEIALAGRSNVGKSSFINKILNRKKLVRISSKPGKTQT 61

Query:    78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
             +N FL+N+  + VD+PGYG+AK     R  W    + YF  RE L   +L++D    P  
Sbjct:    62 LNFFLINEMMHFVDVPGYGYAKVSKTERAAWGKMIETYFTTREQLDAAVLVVDLRHKPTN 121

Query:   138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
              D+   ++L   +IP   + TK DK  + KG+   +++K  ++ +  +       ++ SS
Sbjct:   122 DDVMMYDFLKHYDIPTIIIATKADK--IPKGKW-QKHLKVVKETL--DIESGDEVVLFSS 176

Query:   198 VTGLGRDE 205
              TGLG++E
Sbjct:   177 ETGLGKEE 184

GO:0008150 "biological_process" evidence=ND

TIGR_CMR|BA_4701 BA_4701 "GTP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
 Identities = 67/188 (35%), Positives = 107/188 (56%)

Query:    18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
             ++ + + V S+ + +  P  D PE A+ GRSNVGKSS IN ++ +K+L   S KPGKTQ 
Sbjct:     2 KVTKADIVISAVKPEQYPDGDLPEIALAGRSNVGKSSFINKILNRKKLVRISSKPGKTQT 61

Query:    78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
             +N FL+N+  + VD+PGYG+AK     R  W    + YF  RE L   +L++D    P  
Sbjct:    62 LNFFLINEMMHFVDVPGYGYAKVSKTERAAWGKMIETYFTTREQLDAAVLVVDLRHKPTN 121

Query:   138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
              D+   ++L   +IP   + TK DK  + KG+   +++K  ++ +  +       ++ SS
Sbjct:   122 DDVMMYDFLKHYDIPTIIIATKADK--IPKGKW-QKHLKVVKETL--DIESGDEVVLFSS 176

Query:   198 VTGLGRDE 205
              TGLG++E
Sbjct:   177 ETGLGKEE 184

GO:0005525 "GTP binding" evidence=ISS

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|Q9KVN0 engB "Probable GTP-binding protein EngB" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 69/187 (36%), Positives = 101/187 (54%)

Query:    20 KEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN 79
             +   F+ S+   +  P+D+  E A  GRSN GKSS +N L  +K LA TSK PG+TQLIN
Sbjct:     8 QNTHFITSAPDIRHLPEDEGIEIAFAGRSNAGKSSSLNRLTNQKNLAKTSKTPGRTQLIN 67

Query:    80 HFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID 139
              F V    +IVDLPGYGFA+ P   ++ W      Y   R+SL G+++L+D   P + +D
Sbjct:    68 LFKVADGCHIVDLPGYGFAQVPLEMKLKWQRALGEYLQKRQSLKGLVVLMDIRHPMKDLD 127

Query:   140 LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199
                  W     IP+  + TK DK+K   G R  + +K  ++   + +         SS++
Sbjct:   128 QQLIIWAVECGIPVQVMLTKADKLK--SGARKAQVLKVREEA--KTFGGDVAVDAFSSLS 183

Query:   200 GLGRDEL 206
             G+G D L
Sbjct:   184 GIGVDTL 190

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A5D451	ENGB_PELTS	No assigned EC number	0.4105	0.8447	0.9343	yes	no
B0TFJ0	ENGB_HELMI	No assigned EC number	0.4105	0.8447	0.9024	yes	no
B3ES13	ENGB_AMOA5	No assigned EC number	0.4278	0.9041	0.9428	yes	no
O81004	Y2287_ARATH	No assigned EC number	0.8675	1.0	0.73	yes	no
A0M537	ENGB_GRAFK	No assigned EC number	0.4444	0.8904	0.9848	yes	no
Q97FU0	ENGB_CLOAB	No assigned EC number	0.395	0.8721	0.955	yes	no
B9K8C0	ENGB_THENN	No assigned EC number	0.4642	0.8584	0.9641	yes	no
Q9X1H7	ENGB_THEMA	No assigned EC number	0.4642	0.8584	0.9641	yes	no
Q64UN4	ENGB_BACFR	No assigned EC number	0.4642	0.8812	0.9601	yes	no
B8CY70	ENGB_HALOH	No assigned EC number	0.3968	0.8447	0.9296	yes	no
C5D5L1	ENGB_GEOSW	No assigned EC number	0.3796	0.8310	0.9430	yes	no
Q8RHK1	ENGB_FUSNN	No assigned EC number	0.435	0.8675	0.9793	yes	no
B2RL89	ENGB_PORG3	No assigned EC number	0.4642	0.8812	0.9601	yes	no
B3EP28	ENGB_CHLPB	No assigned EC number	0.3846	0.8493	0.9687	yes	no
Q8A8T4	ENGB_BACTN	No assigned EC number	0.4489	0.8812	0.9554	yes	no
Q5KWK2	ENGB_GEOKA	No assigned EC number	0.4117	0.8310	0.9333	yes	no
Q042T8	ENGB_LACGA	No assigned EC number	0.4074	0.8447	0.9536	yes	no
A4IRG9	ENGB_GEOTN	No assigned EC number	0.4064	0.8310	0.9333	yes	no
A6L4J3	ENGB_BACV8	No assigned EC number	0.4285	0.8812	0.965	yes	no
B7GH28	ENGB_ANOFW	No assigned EC number	0.4042	0.8356	0.9481	yes	no
Q5WEP2	ENGB_BACSK	No assigned EC number	0.3882	0.8356	0.9289	yes	no
Q5LDL2	ENGB_BACFN	No assigned EC number	0.4642	0.8812	0.9601	yes	no
B0KBA1	ENGB_THEP3	No assigned EC number	0.3789	0.8401	0.9583	yes	no
B3QS35	ENGB_CHLT3	No assigned EC number	0.4444	0.8356	0.9481	yes	no
B0K530	ENGB_THEPX	No assigned EC number	0.3789	0.8401	0.9583	yes	no
C0QLA5	ENGB_DESAH	No assigned EC number	0.4111	0.8721	0.9845	yes	no
B3QQY9	ENGB_CHLP8	No assigned EC number	0.4196	0.8219	0.9375	yes	no
Q0TQK6	ENGB_CLOP1	No assigned EC number	0.3794	0.8493	0.9441	yes	no
A6LBY4	ENGB_PARD8	No assigned EC number	0.4595	0.8904	0.975	yes	no
Q7MX68	ENGB_PORGI	No assigned EC number	0.4642	0.8812	0.9601	yes	no
A5IMB8	ENGB_THEP1	No assigned EC number	0.4642	0.8584	0.9641	yes	no
Q2LVW9	ENGB_SYNAS	No assigned EC number	0.4157	0.8356	0.9336	yes	no
B1LBK5	ENGB_THESQ	No assigned EC number	0.4591	0.8584	0.9641	yes	no
A4J7L5	ENGB_DESRM	No assigned EC number	0.4188	0.8447	0.9024	yes	no
Q5FKR5	ENGB_LACAC	No assigned EC number	0.3989	0.8401	0.9387	yes	no
B2A1E8	ENGB_NATTJ	No assigned EC number	0.4021	0.8401	0.9533	yes	no
B1MXT9	ENGB_LEUCK	No assigned EC number	0.3989	0.8401	0.9484	yes	no
A6H1A5	ENGB_FLAPJ	No assigned EC number	0.4234	0.8858	0.9463	yes	no
Q8KAK5	ENGB_CHLTE	No assigned EC number	0.4	0.8356	0.9531	yes	no
A5FIZ1	ENGB_FLAJ1	No assigned EC number	0.4568	0.8812	0.9190	yes	no
A0Q2K7	ENGB_CLONN	No assigned EC number	0.3877	0.8538	0.935	yes	no
Q8XKK5	ENGB_CLOPE	No assigned EC number	0.3794	0.8493	0.9441	yes	no
Q11RJ8	ENGB_CYTH3	No assigned EC number	0.4270	0.8630	0.9497	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	gw1.VII.101.1	hypothetical protein (245 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.IX.3521.1	hypothetical protein; GTPase of unknown physiological role (By similarity) (489 aa)			•				•		0.544
	gw1.X.4400.1	hypothetical protein (451 aa)				•			•		0.450

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	219
PRK00454	196	PRK00454, engB, GTP-binding protein YsxC; Reviewed	4e-79
TIGR03598	178	TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-bi	1e-75
cd01876	170	cd01876, YihA_EngB, YihA (EngB) GTPase family	1e-71
COG0218	200	COG0218, COG0218, Predicted GTPase [General functi	3e-62
pfam01926	117	pfam01926, MMR_HSR1, 50S ribosome-binding GTPase	6e-24
cd00880	161	cd00880, Era_like, E	9e-21
cd00882	161	cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like s	2e-20
cd04163	168	cd04163, Era, E	1e-14
PRK00089	292	PRK00089, era, GTPase Era; Reviewed	1e-13
PRK04213	201	PRK04213, PRK04213, GTP-binding protein; Provision	1e-12
cd01895	174	cd01895, EngA2, EngA2 GTPase contains the second d	4e-12
TIGR03918	391	TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster	8e-12
cd01894	157	cd01894, EngA1, EngA1 GTPase contains the first do	1e-11
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	6e-11
COG1159	298	COG1159, Era, GTPase [General function prediction	8e-11
COG1161	322	COG1161, COG1161, Predicted GTPases [General funct	1e-10
COG0486	454	COG0486, ThdF, Predicted GTPase [General function	2e-10
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	6e-10
TIGR03594	429	TIGR03594, GTPase_EngA, ribosome-associated GTPase	7e-10
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-09
TIGR00231	162	TIGR00231, small_GTP, small GTP-binding protein do	4e-09
PRK00093	435	PRK00093, PRK00093, GTP-binding protein Der; Revie	1e-08
COG1160	444	COG1160, COG1160, Predicted GTPases [General funct	2e-08
PRK05291	449	PRK05291, trmE, tRNA modification GTPase TrmE; Rev	3e-08
cd01855	191	cd01855, YqeH, Circularly permuted YqeH GTPase	1e-07
cd00881	183	cd00881, GTP_translation_factor, GTP translation f	1e-07
cd01856	171	cd01856, YlqF, Circularly permuted YlqF GTPase	2e-07
cd11383	140	cd11383, YfjP, YfjP GTPase	1e-06
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	2e-06
TIGR03597	360	TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase	4e-06
COG3596	296	COG3596, COG3596, Predicted GTPase [General functi	4e-06
cd01857	140	cd01857, HSR1_MMR1, A circularly permuted subfamil	6e-06
cd01859	157	cd01859, MJ1464, An uncharacterized, circularly pe	9e-06
cd01849	146	cd01849, YlqF_related_GTPase, Circularly permuted	1e-05
pfam00009	184	pfam00009, GTP_EFTU, Elongation factor Tu GTP bind	2e-05
COG0370	653	COG0370, FeoB, Fe2+ transport system protein B [In	2e-05
cd01879	159	cd01879, FeoB, Ferrous iron transport protein B (F	5e-05
TIGR03596	276	TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-bi	6e-05
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	7e-05
cd04164	159	cd04164, trmE, trmE is a tRNA modification GTPase	8e-05
PRK09563	287	PRK09563, rbgA, GTPase YlqF; Reviewed	8e-05
pfam02421	190	pfam02421, FeoB_N, Ferrous iron transport protein	9e-05
cd01858	157	cd01858, NGP_1, A novel nucleolar GTP-binding prot	1e-04
PRK09518	712	PRK09518, PRK09518, bifunctional cytidylate kinase	2e-04
TIGR00436	270	TIGR00436, era, GTP-binding protein Era	2e-04
cd01881	167	cd01881, Obg_like, Obg-like family of GTPases cons	4e-04
TIGR00450	442	TIGR00450, mnmE_trmE_thdF, tRNA modification GTPas	5e-04
cd01854	211	cd01854, YjeQ_EngC, Ribosomal interacting GTPase Y	0.001
pfam03193	161	pfam03193, DUF258, Protein of unknown function, DU	0.001
COG1162	301	COG1162, COG1162, Predicted GTPases [General funct	0.002
cd09912	180	cd09912, DLP_2, Dynamin-like protein including dyn	0.002
PRK13796	365	PRK13796, PRK13796, GTPase YqeH; Provisional	0.003
cd04178	171	cd04178, Nucleostemin_like, A circularly permuted	0.003

>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed

 Score =  235 bits (601), Expect = 4e-79
 Identities = 85/195 (43%), Positives = 113/195 (57%), Gaps = 6/195 (3%)

Query: 19  IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
           I   EFV S+ + +  P DD PE A  GRSNVGKSSLINAL  +K LA TSK PG+TQLI
Sbjct: 4   IHNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLI 63

Query: 79  NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
           N F VN    +VDLPGYG+AK     +  W    + Y   RE+L GV+LLID+  P +++
Sbjct: 64  NFFEVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKEL 123

Query: 139 DLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV 198
           DL    WL    IP+  V TK DK+K  KG R  + +K  ++ ++         I+ SS+
Sbjct: 124 DLQMIEWLKEYGIPVLIVLTKADKLK--KGER-KKQLKKVRKALKFGDDEV---ILFSSL 177

Query: 199 TGLGRDELLLHMSQL 213
              G DEL   +++ 
Sbjct: 178 KKQGIDELRAAIAKW 192

Length = 196

>gnl|CDD|213835 TIGR03598, GTPase_YsxC, ribosome biogenesis GTP-binding protein YsxC/EngB

 Score =  225 bits (577), Expect = 1e-75
 Identities = 80/183 (43%), Positives = 110/183 (60%), Gaps = 5/183 (2%)

Query: 22  VEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF 81
            EFVKS+ + K  P DD PE A  GRSNVGKSSLINAL  +K+LA TSK PG+TQLIN F
Sbjct: 1   AEFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF 60

Query: 82  LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD 141
            VN  + +VDLPGYG+AK     +  W    + Y   RE+L GV+LL+D   P +++DL+
Sbjct: 61  EVNDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLE 120

Query: 142 CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL 201
              WL    IP+  V TK DK+K  K    ++ +K  ++ ++++        + SS+   
Sbjct: 121 MIEWLRERGIPVLIVLTKADKLK--KSEL-NKQLKKIKKALKKDADDSV--QLFSSLKKT 175

Query: 202 GRD 204
           G D
Sbjct: 176 GID 178

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes [Protein synthesis, Other]. Length = 178

>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family

 Score =  215 bits (549), Expect = 1e-71
 Identities = 79/173 (45%), Positives = 101/173 (58%), Gaps = 4/173 (2%)

Query: 41  EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA 100
           E A  GRSNVGKSSLINAL  +K+LA TSK PG+TQLIN F V   + +VDLPGYG+AK 
Sbjct: 1   EVAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKV 60

Query: 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160
               R  W    + Y  NRE+L GV+LLIDA   P  IDL+   +L    IP   V TK 
Sbjct: 61  SKEVREKWGKLIEEYLENRENLKGVVLLIDARHGPTPIDLEMLEFLEELGIPFLIVLTKA 120

Query: 161 DKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
           DK+K  K     + +K  ++ +   +   PP I+ SS  G G DEL   +++ 
Sbjct: 121 DKLK--KSEL-AKVLKKIKEEL-NLFNILPPVILFSSKKGTGIDELRALIAEW 169

The YihA (EngB) subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. Length = 170

>gnl|CDD|223296 COG0218, COG0218, Predicted GTPase [General function prediction only]

 Score =  192 bits (490), Expect = 3e-62
 Identities = 82/193 (42%), Positives = 107/193 (55%), Gaps = 11/193 (5%)

Query: 19  IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
             + +F+ S+   K  P+DD PE A  GRSNVGKSSLINAL  +K LA TSK PG+TQLI
Sbjct: 4   YHKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLI 63

Query: 79  NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
           N F V+    +VDLPGYG+AK P   +  W    + Y   R +L GV+LLIDA  PP+ +
Sbjct: 64  NFFEVDDELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDL 123

Query: 139 DLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW----IM 194
           D +   +L    IP+  V TK DK+K        E  K   + + E     PP     ++
Sbjct: 124 DREMIEFLLELGIPVIVVLTKADKLK------KSERNKQLNK-VAEELKKPPPDDQWVVL 176

Query: 195 TSSVTGLGRDELL 207
            SS+   G DEL 
Sbjct: 177 FSSLKKKGIDELK 189

Length = 200

>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase

 Score = 91.6 bits (228), Expect = 6e-24
 Identities = 33/120 (27%), Positives = 53/120 (44%), Gaps = 8/120 (6%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKSWYIVDLPGYGFAKA 100
           A++GR NVGKS+LINAL   K +A+ S  PG T+  ++    + +   +VD PG     +
Sbjct: 3   ALVGRPNVGKSTLINALTGAK-VAIVSDYPGTTRDPILGVLGLGRQIILVDTPGLIEGAS 61

Query: 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-NNIPLTFVFTK 159
                         +         +LL++DAS    + D +    L +    P+  V  K
Sbjct: 62  EG----KGVEGFNRFLEAIREADLILLVVDASEGLTEDDEEILEELEKLPKKPIILVLNK 117

The full-length GTPase protein is required for the complete activity of the protein of interacting with the 50S ribosome and binding of both adenine and guanine nucleotides, with a preference for guanine nucleotide. Length = 117

>gnl|CDD|206646 cd00880, Era_like, E

 Score = 84.6 bits (210), Expect = 9e-21
 Identities = 44/171 (25%), Positives = 65/171 (38%), Gaps = 23/171 (13%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN----HFLVNKSWYIVDLPGYGFA 98
           AI GR NVGKSSL+NAL+ +  + + S  PG T+         L      ++D PG    
Sbjct: 1   AIFGRPNVGKSSLLNALLGQN-VGIVSPIPGTTRDPVRKEWELLPLGPVVLIDTPGLDEE 59

Query: 99  KAPDVTR--MDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFV 156
                 R         +           VLL++D+ + P + +      L     P+  V
Sbjct: 60  GGLGRERVEEARQVADR--------ADLVLLVVDSDLTPVEEEAKL-GLLRERGKPVLLV 110

Query: 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
             K D           E  +  ++   E  P  P  I  S++ G G DEL 
Sbjct: 111 LNKIDL------VPESEEEELLRERKLELLPDLPV-IAVSALPGEGIDELR 154

coli Ras-like protein (Era)-like GTPase. The Era (E. coli Ras-like protein)-like family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngB), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Length = 161

>gnl|CDD|206648 cd00882, Ras_like_GTPase, Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases)

 Score = 84.0 bits (208), Expect = 2e-20
 Identities = 40/174 (22%), Positives = 63/174 (36%), Gaps = 27/174 (15%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSW-------YIVDLPGY 95
            ++GR  VGKSSL+NAL+   E+   S  PG T+  +  +  K          +VD PG 
Sbjct: 1   VVVGRGGVGKSSLLNALL-GGEVGEVSDVPGTTRDPD--VYVKELDKGKVKLVLVDTPGL 57

Query: 96  GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP--QKIDLDCANWLGRNNIPL 153
                     +                  +LL++D++     +   L     L +  IP+
Sbjct: 58  DEFGGLGREELARLLLRG--------ADLILLVVDSTDRESEEDAKLLILRRLRKEGIPI 109

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
             V  K D          +  ++   +L         P    S+ TG G DEL 
Sbjct: 110 ILVGNKID-------LLEEREVEELLRLEELAKILGVPVFEVSAKTGEGVDELF 156

Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulates initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Members of the Ras superfamily are identified by the GTP binding site, which is made up of five characteristic sequence motifs, and the switch I and switch II regions. Length = 161

>gnl|CDD|206726 cd04163, Era, E

 Score = 68.3 bits (168), Expect = 1e-14
 Identities = 51/183 (27%), Positives = 77/183 (42%), Gaps = 46/183 (25%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKP-------------GKTQLINHFLVNKSWYI 89
           AI+GR NVGKS+L+NALV +K +++ S KP                Q+I           
Sbjct: 7   AIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIYTDDDAQII----------F 55

Query: 90  VDLPGYGFAKAPDVTRMD---WSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWL 146
           VD PG    K     RM    WS+        ++  + VL ++DAS    + D      L
Sbjct: 56  VDTPGIHKPKKKLGERMVKAAWSAL-------KDVDL-VLFVVDASEWIGEGDEFILELL 107

Query: 147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW--IMTSSVTGLGRD 204
            ++  P+  V  K D +K        E++    + ++E    HP       S++ G   D
Sbjct: 108 KKSKTPVILVLNKIDLVK------DKEDLLPLLEKLKE---LHPFAEIFPISALKGENVD 158

Query: 205 ELL 207
           ELL
Sbjct: 159 ELL 161

coli Ras-like protein (Era) is a multifunctional GTPase. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA. Length = 168

>gnl|CDD|234624 PRK00089, era, GTPase Era; Reviewed

 Score = 67.8 bits (167), Expect = 1e-13
 Identities = 48/190 (25%), Positives = 67/190 (35%), Gaps = 60/190 (31%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKP-------------GKTQLINHFLVNKSWYI 89
           AI+GR NVGKS+L+NALV +K +++ S KP                Q+I           
Sbjct: 9   AIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRHRIRGIVTEDDAQII----------F 57

Query: 90  VDLPGYGFAKAPDVTRMDWSSFTKGYFLNR-------ESLVGV---LLLIDASVPPQKID 139
           VD PG                      LNR        SL  V   L ++DA       D
Sbjct: 58  VDTPGI---------------HKPKRALNRAMNKAAWSSLKDVDLVLFVVDADEKIGPGD 102

Query: 140 LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW--IMTSS 197
                 L +   P+  V  K D +K        E +    + + E          +  S+
Sbjct: 103 EFILEKLKKVKTPVILVLNKIDLVK------DKEELLPLLEELSE---LMDFAEIVPISA 153

Query: 198 VTGLGRDELL 207
           + G   DELL
Sbjct: 154 LKGDNVDELL 163

Length = 292

>gnl|CDD|179790 PRK04213, PRK04213, GTP-binding protein; Provisional

 Score = 63.8 bits (156), Expect = 1e-12
 Identities = 38/123 (30%), Positives = 59/123 (47%), Gaps = 9/123 (7%)

Query: 32  KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVD 91
            +   D +PE   +GRSNVGKS+L+  L  KK      K+PG T+  NH+     + + D
Sbjct: 2   FETRPDRKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDW-GDFILTD 58

Query: 92  LPGYGF-AKAPDVTRMDWSSFTKGYFL-NRESLVGVLLLIDASVPPQKIDLDCANWLGRN 149
           LPG+GF +  P   +         Y   N + ++  +L++D     + I+     W GR 
Sbjct: 59  LPGFGFMSGVPKEVQEKIKDEIVRYIEDNADRILAAVLVVDGKSFIEIIE----RWEGRG 114

Query: 150 NIP 152
            IP
Sbjct: 115 EIP 117

Length = 201

>gnl|CDD|206682 cd01895, EngA2, EngA2 GTPase contains the second domain of EngA

 Score = 62.1 bits (152), Expect = 4e-12
 Identities = 48/177 (27%), Positives = 82/177 (46%), Gaps = 17/177 (9%)

Query: 38  DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-----LINHFLVNKSWYIVDL 92
           D  + AI+GR NVGKSSL+NAL+  +E  + S   G T+        +    + + ++D 
Sbjct: 1   DPIKIAIIGRPNVGKSSLLNALL-GEERVIVSDIAGTTRDSIDVPFEYD--GQKYTLIDT 57

Query: 93  PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP 152
            G    K      ++  S  +       + V VLL++DAS    + DL  A  +      
Sbjct: 58  AGIR-KKGKVTEGIEKYSVLRTLKAIERADV-VLLVLDASEGITEQDLRIAGLILEEGKA 115

Query: 153 LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH--HPPWIMTSSVTGLGRDELL 207
           L  V  K D ++     + ++ +K F++ +R   P   + P +  S++TG G D+L 
Sbjct: 116 LIIVVNKWDLVE-----KDEKTMKEFEKELRRKLPFLDYAPIVFISALTGQGVDKLF 167

This EngA2 subfamily CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 174

>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase HydF

 Score = 63.3 bits (155), Expect = 8e-12
 Identities = 56/188 (29%), Positives = 76/188 (40%), Gaps = 47/188 (25%)

Query: 35  PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           PK +R    I GR N GKSSLINAL   +++A+ S  PG T       V K+   ++L  
Sbjct: 2   PKGNRLHIGIFGRRNAGKSSLINALTG-QDIAIVSDVPGTTTDP----VYKA---MELLP 53

Query: 95  YGFAKAPDVTRMDWSSFTKGYFLNRESLVG----------------VLLLIDASVPPQKI 138
            G    P V  +D    T G  L+ E  +G                 LL++DA V P + 
Sbjct: 54  LG----P-VVLID----TAG--LDDEGELGELRVEKTREVLDKTDLALLVVDAGVGPGEY 102

Query: 139 DLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV 198
           +L+    L    IP   V  K D  + +      E                 P I  S++
Sbjct: 103 ELELIEELKERKIPYIVVINKIDLGEESAELEKLEKKFGL------------PPIFVSAL 150

Query: 199 TGLGRDEL 206
           TG G DEL
Sbjct: 151 TGEGIDEL 158

This model describes the family of the [Fe] hydrogenase maturation protein HypF as characterized in Chlamydomonas reinhardtii and found, in an operon with radical SAM proteins HydE and HydG, in numerous bacteria. It has GTPase activity, can bind an 4Fe-4S cluster, and is essential for hydrogenase activity [Protein fate, Protein modification and repair]. Length = 391

>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA

 Score = 60.1 bits (147), Expect = 1e-11
 Identities = 38/175 (21%), Positives = 66/175 (37%), Gaps = 35/175 (20%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAK 99
           AI+GR NVGKS+L N L  +++ A+ S  PG T+   +       + + ++D  G     
Sbjct: 1   AIVGRPNVGKSTLFNRLTGRRD-AIVSDTPGVTRDRKYGEAEWGGREFILIDTGGIEPDD 59

Query: 100 APDVTRMDWSSFTKGYFLNRESLVG------VLLLIDASVPPQKIDLDCANWLGRNNIPL 153
                 +             ++ +       +L ++D        D + A +L ++  P+
Sbjct: 60  EGISKEI-----------REQAEIAIEEADVILFVVDGREGLTPADEEIAKYLRKSKKPV 108

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
             V  K D        + +E    F  L   E  P        S+  G G  +LL
Sbjct: 109 ILVVNKID------NIKEEEEAAEFYSLGFGEPIP-------ISAEHGRGIGDLL 150

This EngA1 subfamily CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability. Length = 157

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 60.9 bits (149), Expect = 6e-11
 Identities = 51/189 (26%), Positives = 82/189 (43%), Gaps = 36/189 (19%)

Query: 35  PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-----LINHFLVNKSWYI 89
            +D   + AI+GR NVGKS+L+NAL+  +E  + S   G T+             K + +
Sbjct: 168 EEDGPIKIAIIGRPNVGKSTLVNALL-GEERVIVSDIAGTTRDSIDIPFERN--GKKYTL 224

Query: 90  VDLPGYGFAKAPDVTRMDWSSFTKG---YFLNR------ESLVGVLLLIDASVPPQKIDL 140
           +D  G        + R      T+G   Y + R       + V VLL++DA+    + DL
Sbjct: 225 IDTAG--------IRRK--GKVTEGVEKYSVLRTLKAIERADV-VLLVLDATEGITEQDL 273

Query: 141 DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH--HPPWIMTSSV 198
             A         L  V  K D +K       ++  + F++ +R   P     P +  S++
Sbjct: 274 RIAGLALEAGKALVIVVNKWDLVK------DEKTREEFKKELRRKLPFLDFAPIVFISAL 327

Query: 199 TGLGRDELL 207
           TG G D+LL
Sbjct: 328 TGQGVDKLL 336

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|224081 COG1159, Era, GTPase [General function prediction only]

 Score = 59.9 bits (146), Expect = 8e-11
 Identities = 48/174 (27%), Positives = 74/174 (42%), Gaps = 28/174 (16%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQL-INHFLVNKSWYI--VDLPGYGFAK 99
           AI+GR NVGKS+L+NALV +K +++ S KP  T+  I   +   +  I  VD PG    K
Sbjct: 10  AIIGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK 68

Query: 100 APDVTRMDWSSFTKGYFLNRE---SLVGV---LLLIDASVPPQKIDLDCANWLGRNNIPL 153
                 +       G  +N+    +L  V   L ++DA       D      L +   P+
Sbjct: 69  ----HAL-------GELMNKAARSALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPV 117

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
             V  K DK+K      P   +      +++  P     +  S++ G   D LL
Sbjct: 118 ILVVNKIDKVK------PKTVLLKLIAFLKKLLPFKEI-VPISALKGDNVDTLL 164

Length = 298

>gnl|CDD|224083 COG1161, COG1161, Predicted GTPases [General function prediction only]

 Score = 59.7 bits (145), Expect = 1e-10
 Identities = 23/54 (42%), Positives = 34/54 (62%), Gaps = 1/54 (1%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGF 97
           ++G  NVGKS+LIN L+ KK +A TS +PG T+ I    ++   Y++D PG   
Sbjct: 137 VVGYPNVGKSTLINRLLGKK-VAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIP 189

Length = 322

>gnl|CDD|223561 COG0486, ThdF, Predicted GTPase [General function prediction only]

 Score = 58.7 bits (143), Expect = 2e-10
 Identities = 49/191 (25%), Positives = 72/191 (37%), Gaps = 57/191 (29%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-------LINHFLVNKSWYIVDLPGY 95
            I+GR NVGKSSL+NAL+  ++ A+ +   G T+        +N   V     +VD  G 
Sbjct: 221 VIIGRPNVGKSSLLNALLG-RDRAIVTDIAGTTRDVIEEDINLNGIPVR----LVDTAGI 275

Query: 96  ----------GFAKAPDVTRMDWSSFTKGYFLNRESLV---GVLLLIDASVPPQKIDLDC 142
                     G  +A                  ++++     VL ++DAS P  K DL  
Sbjct: 276 RETDDVVERIGIERA------------------KKAIEEADLVLFVLDASQPLDKEDLA- 316

Query: 143 ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLG 202
              L     P+  V  K D             + S  +L  E   +    I  S+ TG G
Sbjct: 317 LIELLPKKKPIIVVLNKAD-------------LVSKIELESEKLANGDAIISISAKTGEG 363

Query: 203 RDELLLHMSQL 213
            D L   + QL
Sbjct: 364 LDALREAIKQL 374

Length = 454

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 57.6 bits (140), Expect = 6e-10
 Identities = 42/179 (23%), Positives = 67/179 (37%), Gaps = 42/179 (23%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAK 99
           AI+GR NVGKS+L N L  ++ +A+ S  PG T+   +     + + + ++D  G     
Sbjct: 7   AIVGRPNVGKSTLFNRLTGRR-IAIVSDTPGVTRDRIYGDAEWLGREFILIDTGG----- 60

Query: 100 APDVTRMDWSSFTKGYFLNR----------ESLVGVLLLIDASVPPQKIDLDCANWLGRN 149
                        +                E+ V +L ++D        D + A  L R+
Sbjct: 61  --------LDDGDEDELQELIREQALIAIEEADV-ILFVVDGREGITPADEEIAKILRRS 111

Query: 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
             P+  V  K D +K       +E    F  L   E  P        S+  G G  +LL
Sbjct: 112 KKPVILVVNKIDNLK------AEELAYEFYSLGFGEPVP-------ISAEHGRGIGDLL 157

Length = 444

>gnl|CDD|234274 TIGR03594, GTPase_EngA, ribosome-associated GTPase EngA

 Score = 57.5 bits (140), Expect = 7e-10
 Identities = 41/175 (23%), Positives = 67/175 (38%), Gaps = 35/175 (20%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAK 99
           AI+GR NVGKS+L N L  K+  A+ S  PG T+   +       + + ++D  G     
Sbjct: 3   AIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD 61

Query: 100 APDVTRMDWSSFTKGYFLNRESLVG------VLLLIDASVPPQKIDLDCANWLGRNNIPL 153
                ++             ++ +       +L ++D        D + A WL ++  P+
Sbjct: 62  DGLDKQI-----------REQAEIAIEEADVILFVVDGREGLTPEDEEIAKWLRKSGKPV 110

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
             V  K D      G++ D     F  L   E  P        S+  G G  +LL
Sbjct: 111 ILVANKID------GKKEDAVAAEFYSLGFGEPIP-------ISAEHGRGIGDLL 152

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability [Protein synthesis, Other]. Length = 429

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 57.0 bits (139), Expect = 1e-09
 Identities = 39/175 (22%), Positives = 68/175 (38%), Gaps = 35/175 (20%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAK 99
           AI+GR NVGKS+L N L  K+  A+ +  PG T+   +     + + + ++D  G     
Sbjct: 5   AIVGRPNVGKSTLFNRLTGKR-DAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDD 63

Query: 100 APDVTRMDWSSFTKGYFLNRESLVG------VLLLIDASVPPQKIDLDCANWLGRNNIPL 153
                ++             ++ +       +L ++D        D + A  L ++N P+
Sbjct: 64  DGFEKQI-----------REQAELAIEEADVILFVVDGRAGLTPADEEIAKILRKSNKPV 112

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
             V  K D          + +   F  L + E YP        S+  G G  +LL
Sbjct: 113 ILVVNKVDGPD------EEADAYEFYSLGLGEPYP-------ISAEHGRGIGDLL 154

Length = 435

>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain

 Score = 53.5 bits (129), Expect = 4e-09
 Identities = 38/173 (21%), Positives = 67/173 (38%), Gaps = 30/173 (17%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVNKSWY---IVDLPGYGF 97
            I+G  NVGKS+L+N L    ++++T  KPG T+         +   Y   ++D  G   
Sbjct: 5   VIVGDPNVGKSTLLNRL-LGNKISITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAG--- 60

Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGV----LLLIDASVPPQKIDLDCANWLGRNNIPL 153
                  + D+ +  + Y+   ES + V    +L++D     +K           + +P+
Sbjct: 61  -------QEDYDAIRRLYYRAVESSLRVFDIVILVLDVEEILEK-QTKEIIHHAESGVPI 112

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDEL 206
             V  K D          D  +K+    +     +  P I  S+ TG   D  
Sbjct: 113 ILVGNKIDL--------RDAKLKTHVAFLFAKL-NGEPIIPLSAETGKNIDSA 156

Proteins with a small GTP-binding domain recognized by this model include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others. In some proteins the domain occurs more than once.This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model [Unknown function, General]. Length = 162

>gnl|CDD|234628 PRK00093, PRK00093, GTP-binding protein Der; Reviewed

 Score = 53.9 bits (131), Expect = 1e-08
 Identities = 52/194 (26%), Positives = 83/194 (42%), Gaps = 47/194 (24%)

Query: 35  PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-----LINHFLVNKSWYI 89
            +D+  + AI+GR NVGKSSLINAL+  +E  + S   G T+             + + +
Sbjct: 169 EEDEPIKIAIIGRPNVGKSSLINALL-GEERVIVSDIAGTTRDSIDTPFERD--GQKYTL 225

Query: 90  VDLPGYGFAKAPDVTRMDWSSFTKG--------YFLNR------ESLVGVLLLIDASVPP 135
           +D  G        + R       KG        Y + R       + V VLL+IDA+   
Sbjct: 226 IDTAG--------IRR-------KGKVTEGVEKYSVIRTLKAIERADV-VLLVIDATEGI 269

Query: 136 QKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH--HPPWI 193
            + DL  A         L  V  K D +        ++ ++ F++ +R   P   + P +
Sbjct: 270 TEQDLRIAGLALEAGRALVIVVNKWDLVD-------EKTMEEFKKELRRRLPFLDYAPIV 322

Query: 194 MTSSVTGLGRDELL 207
             S++TG G D+LL
Sbjct: 323 FISALTGQGVDKLL 336

Length = 435

>gnl|CDD|224082 COG1160, COG1160, Predicted GTPases [General function prediction only]

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 49/197 (24%), Positives = 83/197 (42%), Gaps = 41/197 (20%)

Query: 30  RAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-LIN-HFLVN-KS 86
             ++  + D  + AI+GR NVGKSSLINA++  +E  + S   G T+  I+  F  + + 
Sbjct: 169 EEEEEEETDPIKIAIIGRPNVGKSSLINAIL-GEERVIVSDIAGTTRDSIDIEFERDGRK 227

Query: 87  WYIVDLPG-------------YGFAKA-PDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS 132
           + ++D  G             Y  A+    + R D                 VLL+IDA+
Sbjct: 228 YVLIDTAGIRRKGKITESVEKYSVARTLKAIERADV----------------VLLVIDAT 271

Query: 133 VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP-- 190
               + DL  A  +      +  V  K D +        +  ++ F++ +R   P     
Sbjct: 272 EGISEQDLRIAGLIEEAGRGIVIVVNKWDLV-----EEDEATMEEFKKKLRRKLPFLDFA 326

Query: 191 PWIMTSSVTGLGRDELL 207
           P +  S++TG G D+L 
Sbjct: 327 PIVFISALTGQGLDKLF 343

Length = 444

>gnl|CDD|235392 PRK05291, trmE, tRNA modification GTPase TrmE; Reviewed

 Score = 52.8 bits (128), Expect = 3e-08
 Identities = 50/200 (25%), Positives = 64/200 (32%), Gaps = 79/200 (39%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIV-DLPGYGFAKAP 101
            I GR NVGKSSL+NAL+  +E A                      IV D+ G       
Sbjct: 219 VIAGRPNVGKSSLLNALLG-EERA----------------------IVTDIAG------- 248

Query: 102 DVTRMDW--SSFT-KGYFLN-------RES--LV---G-------------VLLLIDASV 133
             TR D         G  L        RE+   V   G             VLL++DAS 
Sbjct: 249 -TTR-DVIEEHINLDGIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADLVLLVLDASE 306

Query: 134 PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193
           P  + D          + P+  V  K D          +                  P I
Sbjct: 307 PLTEEDD--EILEELKDKPVIVVLNKADLTGEIDLEEEN----------------GKPVI 348

Query: 194 MTSSVTGLGRDELLLHMSQL 213
             S+ TG G DEL   + +L
Sbjct: 349 RISAKTGEGIDELREAIKEL 368

Length = 449

>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase

 Score = 49.6 bits (119), Expect = 1e-07
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 10/62 (16%)

Query: 44  ILGRSNVGKSSLINALVRK----------KELALTSKKPGKTQLINHFLVNKSWYIVDLP 93
           ++G +NVGKS+LINAL++            +    S  PG T  +    + +   + D P
Sbjct: 130 VVGATNVGKSTLINALLKSNGGKVQAQALVQRLTVSPIPGTTLGLIKIPLGEGKKLYDTP 189

Query: 94  GY 95
           G 
Sbjct: 190 GI 191

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. Length = 191

>gnl|CDD|206647 cd00881, GTP_translation_factor, GTP translation factor family primarily contains translation initiation, elongation and release factors

 Score = 49.2 bits (118), Expect = 1e-07
 Identities = 40/191 (20%), Positives = 72/191 (37%), Gaps = 44/191 (23%)

Query: 42  FAILGRSNVGKSSLINALVRK----------KELALTSKKP----G---KTQLINHFLVN 84
             ++G  + GK++L  +L+ +          KE  L + K     G   KT ++      
Sbjct: 2   VGVIGHVDHGKTTLTGSLLYQTGAIDRRGTRKETFLDTLKEERERGITIKTGVVEFEWPK 61

Query: 85  KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLV---GVLLLIDASVPPQKIDLD 141
           +    +D PG+           D+S  T         L    G LL++DA+   +    +
Sbjct: 62  RRINFIDTPGHE----------DFSKETVR------GLAQADGALLVVDANEGVEPQTRE 105

Query: 142 CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE-----NYPHHPPWIMTS 196
             N      +P+     K D+         DE ++  ++L++            P I  S
Sbjct: 106 HLNIALAGGLPIIVAVNKIDR---VGEEDFDEVLREIKELLKLIGFTFLKGKDVPIIPIS 162

Query: 197 SVTGLGRDELL 207
           ++TG G +ELL
Sbjct: 163 ALTGEGIEELL 173

The GTP translation factor family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function. Length = 183

>gnl|CDD|206749 cd01856, YlqF, Circularly permuted YlqF GTPase

 Score = 49.1 bits (118), Expect = 2e-07
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           ++G  NVGKS+LIN L  KK +A    KPG T+      +  +  ++D PG
Sbjct: 120 VVGIPNVGKSTLINRLRGKK-VAKVGNKPGVTRGQQWIRIGPNIELLDTPG 169

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in all eukaryotes as well as a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga). Length = 171

>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase

 Score = 46.2 bits (110), Expect = 1e-06
 Identities = 35/134 (26%), Positives = 51/134 (38%), Gaps = 29/134 (21%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKT--------QLINHFLVNKSWYIVDLPG 94
            ++G++  GKSSL NAL    E+A    +   T        Q     LV     ++DLPG
Sbjct: 1   GLMGKTGAGKSSLCNALFG-TEVAAVGDRRPTTRAAQAYVWQTGGDGLV-----LLDLPG 54

Query: 95  YGFAKAPDVTRMDWSSFTKGYFLNRESLVG----VLLLIDASVPPQKIDLDC-ANWLGRN 149
            G          +     + Y      L+     VL L+DA       D D     L  +
Sbjct: 55  VG----------ERGRRDREYEELYRRLLPEADLVLWLLDADDRALAADHDFYLLPLAGH 104

Query: 150 NIPLTFVFTKCDKM 163
           + PL FV  + D +
Sbjct: 105 DAPLLFVLNQVDPV 118

The Era (E. coli Ras-like protein)-like YfjP subfamily includes several uncharacterized bacterial GTPases that are similar to Era. They generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. Length = 140

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 45.9 bits (110), Expect = 2e-06
 Identities = 16/33 (48%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
           I G+ NVGKSSL+NAL   ++ A+ S   G T
Sbjct: 7  VIAGKPNVGKSSLLNALAG-RDRAIVSDIAGTT 38

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|213834 TIGR03597, GTPase_YqeH, ribosome biogenesis GTPase YqeH

 Score = 46.5 bits (111), Expect = 4e-06
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 4/56 (7%)

Query: 44  ILGRSNVGKSSLINALVR----KKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95
           ++G +NVGKSSLIN L++     K++  TS  PG T  +    ++    + D PG 
Sbjct: 159 VVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGI 214

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli [Protein synthesis, Other]. Length = 360

>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction only]

 Score = 45.9 bits (109), Expect = 4e-06
 Identities = 46/188 (24%), Positives = 74/188 (39%), Gaps = 35/188 (18%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKA 100
           ++G +  GKSSLINAL  + E+   SK    T +     ++   ++  + D PG G  K 
Sbjct: 44  LMGATGAGKSSLINALF-QGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKD 102

Query: 101 PDVTRMDWSSFTKGY--FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN--NIPLTFV 156
            D      +   + Y  +L +  L  VL LI A       D D    +     +  + FV
Sbjct: 103 KD------AEHRQLYRDYLPKLDL--VLWLIKADDRALGTDEDFLRDVIILGLDKRVLFV 154

Query: 157 FTKCDK-MKV----AKGRRPDENIKSF--------QQLIRENYPHHPPWIMTSSV-TGLG 202
            T+ D+        + G +P   IK F         +L +E  P     ++  S     G
Sbjct: 155 VTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKP-----VVAVSGRLPWG 209

Query: 203 RDELLLHM 210
             EL+  +
Sbjct: 210 LKELVRAL 217

Length = 296

>gnl|CDD|206750 cd01857, HSR1_MMR1, A circularly permuted subfamily of the Ras GTPases

 Score = 44.1 bits (105), Expect = 6e-06
 Identities = 22/49 (44%), Positives = 28/49 (57%), Gaps = 1/49 (2%)

Query: 46  GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           G  NVGKSSLINALV  K+++  S  PGKT+      +     + D PG
Sbjct: 89  GYPNVGKSSLINALVGSKKVS-VSSTPGKTKHFQTIFLEPGITLCDCPG 136

Human HSR1 is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N-terminus. Length = 140

>gnl|CDD|206752 cd01859, MJ1464, An uncharacterized, circularly permuted subfamily of the Ras GTPases

 Score = 43.8 bits (104), Expect = 9e-06
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 4/55 (7%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSK---KPGKTQLINHFLVNKSWYIVDLPG 94
            ++G   VGKSS+INAL + +  A TS     PG T+ I    ++   Y++D PG
Sbjct: 103 GVVGYPKVGKSSIINAL-KGRHSASTSPIPGSPGYTKGIQLVRIDSKIYLIDTPG 156

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|206746 cd01849, YlqF_related_GTPase, Circularly permuted YlqF-related GTPases

 Score = 43.5 bits (103), Expect = 1e-05
 Identities = 22/52 (42%), Positives = 30/52 (57%), Gaps = 1/52 (1%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
            ++G  NVGKSS INAL+ K +L      PG T+L     ++K  Y+ D PG
Sbjct: 95  GVVGLPNVGKSSFINALLNKFKL-KVGSIPGTTKLQQDVKLDKEIYLYDTPG 145

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. Length = 146

>gnl|CDD|215653 pfam00009, GTP_EFTU, Elongation factor Tu GTP binding domain

 Score = 43.3 bits (103), Expect = 2e-05
 Identities = 44/193 (22%), Positives = 71/193 (36%), Gaps = 50/193 (25%)

Query: 42  FAILGRSNVGKSSLINALV---------RKKELALTSKKP-----GKTQLINH--FLVNK 85
             I+G  + GK++L +AL+           K   +  K       G T  I    F   K
Sbjct: 6   IGIIGHVDHGKTTLTDALLYVTGAISKESAKGARVLDKLKEERERGITIKIAAVSFETKK 65

Query: 86  SWY-IVDLPGY-GFAKAPDVTR----MDWSSFTKGYFLNRESLVGVLLLIDAS--VPPQK 137
               I+D PG+  F K  ++ R     D                G +L++DA   V PQ 
Sbjct: 66  RLINIIDTPGHVDFTK--EMIRGASQAD----------------GAILVVDAVEGVMPQT 107

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP---PWIM 194
            +           +P+     K D++        +E ++   + + E Y       P + 
Sbjct: 108 REH--LLLAKTLGVPIIVFINKIDRVD---DAELEEVVEEISRELLEKYGFGGETVPVVP 162

Query: 195 TSSVTGLGRDELL 207
            S++TG G DELL
Sbjct: 163 GSALTGEGIDELL 175

This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. Length = 184

>gnl|CDD|223447 COG0370, FeoB, Fe2+ transport system protein B [Inorganic ion transport and metabolism]

 Score = 44.2 bits (105), Expect = 2e-05
 Identities = 48/193 (24%), Positives = 66/193 (34%), Gaps = 71/193 (36%)

Query: 43  AILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSWY 88
           A++G  NVGK++L NAL              V KKE  L  K                  
Sbjct: 7   ALVGNPNVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK-------------GHEIE 53

Query: 89  IVDLPG-YGF-AKAPD--VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN 144
           IVDLPG Y   A + D  V R          FL       ++ ++DA+            
Sbjct: 54  IVDLPGTYSLTAYSEDEKVAR---------DFLLEGKPDLIVNVVDATN----------- 93

Query: 145 WLGRN----------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194
            L RN           IP+       D    AK R    +I+   +L+        P + 
Sbjct: 94  -LERNLYLTLQLLELGIPMILALNMID---EAKKRGIRIDIEKLSKLLG------VPVVP 143

Query: 195 TSSVTGLGRDELL 207
           T +  G G +EL 
Sbjct: 144 TVAKRGEGLEELK 156

Length = 653

>gnl|CDD|206667 cd01879, FeoB, Ferrous iron transport protein B (FeoB) family

 Score = 41.7 bits (99), Expect = 5e-05
 Identities = 50/199 (25%), Positives = 72/199 (36%), Gaps = 71/199 (35%)

Query: 43  AILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSWY 88
           A++G  NVGK++L NAL              V KKE                    K   
Sbjct: 1   ALVGNPNVGKTTLFNALTGARQKVGNWPGVTVEKKEGEFKLG-------------GKEIE 47

Query: 89  IVDLPG-YGF-AKAPD--VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN 144
           IVDLPG Y     + D  V R D        FL  E    ++ ++DA+           N
Sbjct: 48  IVDLPGTYSLTPYSEDEKVAR-D--------FLLGEEPDLIVNVVDAT-----------N 87

Query: 145 WLGRN----------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM 194
            L RN           +P+       D    A+ R    ++    +L+        P + 
Sbjct: 88  -LERNLYLTLQLLELGLPVVVALNMID---EAEKRGIKIDLDKLSELLG------VPVVP 137

Query: 195 TSSVTGLGRDELLLHMSQL 213
           TS+  G G DELL  +++L
Sbjct: 138 TSARKGEGIDELLDAIAKL 156

Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 159

>gnl|CDD|213833 TIGR03596, GTPase_YlqF, ribosome biogenesis GTP-binding protein YlqF

 Score = 42.5 bits (101), Expect = 6e-05
 Identities = 20/51 (39%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           I+G  NVGKS+LIN L  KK +A    +PG T+      ++    ++D PG
Sbjct: 123 IVGIPNVGKSTLINRLAGKK-VAKVGNRPGVTKGQQWIKLSDGLELLDTPG 172

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members [Protein synthesis, Other]. Length = 276

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 42.9 bits (101), Expect = 7e-05
 Identities = 49/189 (25%), Positives = 78/189 (41%), Gaps = 23/189 (12%)

Query: 40  PEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
              A++GR NVGKSSL+N L  ++     +LA T++ P   +++   +  + W  +D  G
Sbjct: 451 RRVALVGRPNVGKSSLLNQLTHEERAVVNDLAGTTRDP-VDEIVE--IDGEDWLFIDTAG 507

Query: 95  YGFAKAPDVTRMD-WSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
               +   +T  + +SS      + R  L   L L DAS P  + DL   +        L
Sbjct: 508 IK-RRQHKLTGAEYYSSLRTQAAIERSEL--ALFLFDASQPISEQDLKVMSMAVDAGRAL 564

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW---IMTSSVTGLGRDELLLHM 210
             VF K D M        DE  +   + + +       W   +  S+ TG   + L   M
Sbjct: 565 VLVFNKWDLM--------DEFRRQRLERLWKTEFDRVTWARRVNLSAKTGWHTNRLAPAM 616

Query: 211 SQLRNYWDQ 219
            +    WDQ
Sbjct: 617 QEALESWDQ 625

Length = 712

>gnl|CDD|206727 cd04164, trmE, trmE is a tRNA modification GTPase

 Score = 41.3 bits (98), Expect = 8e-05
 Identities = 23/89 (25%), Positives = 32/89 (35%), Gaps = 17/89 (19%)

Query: 125 VLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE 184
           VLL++DAS    +   D          P+  V  K D +  A+G                
Sbjct: 86  VLLVVDASEGLDE--EDLEILELPAKKPVIVVLNKSDLLSDAEGISELNG---------- 133

Query: 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
                 P I  S+ TG G DEL   + +L
Sbjct: 134 -----KPIIAISAKTGEGIDELKEALLEL 157

TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 159

>gnl|CDD|236570 PRK09563, rbgA, GTPase YlqF; Reviewed

 Score = 42.1 bits (100), Expect = 8e-05
 Identities = 24/54 (44%), Positives = 31/54 (57%), Gaps = 7/54 (12%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINHFLVNKSWYIVDLPG 94
           I+G  NVGKS+LIN L  KK +A T  +PG T   Q I    + K   ++D PG
Sbjct: 126 IIGIPNVGKSTLINRLAGKK-IAKTGNRPGVTKAQQWIK---LGKGLELLDTPG 175

Length = 287

>gnl|CDD|217025 pfam02421, FeoB_N, Ferrous iron transport protein B

 Score = 41.3 bits (98), Expect = 9e-05
 Identities = 47/194 (24%), Positives = 67/194 (34%), Gaps = 71/194 (36%)

Query: 42  FAILGRSNVGKSSLINAL--------------VRKKELALTSKKPGKTQLINHFLVNKSW 87
            A++G  NVGK++L NAL              V KKE     K                 
Sbjct: 3   IALVGNPNVGKTTLFNALTGARQHVGNWPGVTVEKKEGTFKYK-------------GYEI 49

Query: 88  YIVDLPG-YGF-AKAPD--VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCA 143
            IVDLPG Y     + +  V R          +L  E    ++ ++DA+           
Sbjct: 50  EIVDLPGTYSLSPYSEEEKVARD---------YLLEEKPDVIINVVDAT----------- 89

Query: 144 NWLGRN----------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI 193
           N L RN           IP+       D    A+ +    +IK   +L+        P +
Sbjct: 90  N-LERNLYLTLQLLELGIPVVVALNMMD---EAEKKGIKIDIKKLSELLG------VPVV 139

Query: 194 MTSSVTGLGRDELL 207
            TS+  G G DEL 
Sbjct: 140 PTSARKGEGIDELK 153

Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent. Length = 190

>gnl|CDD|206751 cd01858, NGP_1, A novel nucleolar GTP-binding protein, circularly permuted subfamily of the Ras GTPases

 Score = 40.4 bits (95), Expect = 1e-04
 Identities = 21/59 (35%), Positives = 37/59 (62%), Gaps = 3/59 (5%)

Query: 38  DRPEFAI--LGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           D+ + ++  +G  NVGKSS+IN L R K++   +  PG+T++  +  + K  Y++D PG
Sbjct: 99  DKKQISVGFIGYPNVGKSSVINTL-RSKKVCKVAPIPGETKVWQYITLMKRIYLIDCPG 156

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. Length = 157

>gnl|CDD|236546 PRK09518, PRK09518, bifunctional cytidylate kinase/GTPase Der; Reviewed

 Score = 41.3 bits (97), Expect = 2e-04
 Identities = 32/122 (26%), Positives = 52/122 (42%), Gaps = 9/122 (7%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQ---LINHFLVNKSWYIVDLPGYGFAK 99
           AI+GR NVGKS+L+N ++ ++E A+    PG T+     +       + +VD  G+    
Sbjct: 279 AIVGRPNVGKSTLVNRILGRRE-AVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGW---- 333

Query: 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK 159
             DV  +D S+      +       V+ ++D  V     D      L R   P+     K
Sbjct: 334 EADVEGID-SAIASQAQIAVSLADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNK 392

Query: 160 CD 161
            D
Sbjct: 393 ID 394

Length = 712

>gnl|CDD|129528 TIGR00436, era, GTP-binding protein Era

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 4/56 (7%)

Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKTQL-INHFLVNKSWYI--VDLPGY 95
          AILGR NVGKS+L+N L  +K +++TS K   T+  I+      +  I  +D PG+
Sbjct: 4  AILGRPNVGKSTLLNQLHGQK-ISITSPKAQTTRNRISGIHTTGASQIIFIDTPGF 58

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein [Protein synthesis, Other]. Length = 270

>gnl|CDD|206668 cd01881, Obg_like, Obg-like family of GTPases consist of five subfamilies: Obg, DRG, YyaF/YchF, Ygr210, and NOG1

 Score = 39.3 bits (92), Expect = 4e-04
 Identities = 45/181 (24%), Positives = 69/181 (38%), Gaps = 37/181 (20%)

Query: 43  AILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLIN----HFLVNKSWYIVDLPGYGF 97
            ++G  NVGKS+L++AL   K E+A     P  T   N     F       I+DLPG   
Sbjct: 1   GLVGLPNVGKSTLLSALTSAKVEIA---SYPFTTLEPNVGVFEFGDGVDIQIIDLPGL-- 55

Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLL-LIDAS-------VPPQKI---DLDCANWL 146
                +             L       ++L +IDAS       +  QK    ++  +  L
Sbjct: 56  -----LDGASEGRGLGEQILAHLYRSDLILHVIDASEDCVGDPLEDQKTLNEEVSGSF-L 109

Query: 147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDEL 206
              N P   V  K D          + N+K   +L  +      P + TS++T LG D +
Sbjct: 110 FLKNKPEMIVANKIDMAS-------ENNLK---RLKLDKLKRGIPVVPTSALTRLGLDRV 159

Query: 207 L 207
           +
Sbjct: 160 I 160

The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to form one major branch of the Obg family and the Ygr210 and YchF subfamilies form another branch. No GEFs, GAPs, or GDIs for Obg have been identified. Length = 167

>gnl|CDD|232980 TIGR00450, mnmE_trmE_thdF, tRNA modification GTPase TrmE

 Score = 40.2 bits (94), Expect = 5e-04
 Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 14/124 (11%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-LINHFLVNKSWYIVDLPGYGFAKAP 101
           AI+G  NVGKSSL+NAL++ ++ A+ S   G T+ ++          I  L   G  +  
Sbjct: 207 AIVGSPNVGKSSLLNALLK-QDRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA 265

Query: 102 D-VTRMDWSSFTKGYFLNRESLVG---VLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
           D V R+       G   + +++     V+ ++DAS P  K D      L ++  P   V 
Sbjct: 266 DFVERL-------GIEKSFKAIKQADLVIYVLDASQPLTK-DDFLIIDLNKSKKPFILVL 317

Query: 158 TKCD 161
            K D
Sbjct: 318 NKID 321

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer [Protein synthesis, tRNA and rRNA base modification]. Length = 442

>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a circularly permuted subfamily of the Ras GTPases

 Score = 38.1 bits (90), Expect = 0.001
 Identities = 21/61 (34%), Positives = 33/61 (54%), Gaps = 12/61 (19%)

Query: 43  AILGRSNVGKSSLINALVRKKELA--LTSKKPGK-------TQLINHFLVNKSWYIVDLP 93
            ++G+S VGKS+L+NAL+ +  LA    S+K G+        +L   F +     I+D P
Sbjct: 89  VLVGQSGVGKSTLLNALLPELVLATGEISEKLGRGRHTTTHREL---FPLPGGGLIIDTP 145

Query: 94  G 94
           G
Sbjct: 146 G 146

YjeQ (YloQ in Bacillus subtilis) is a ribosomal small subunit-dependent GTPase; hence also known as RsgA. YjeQ is a late-stage ribosomal biogenesis factor involved in the 30S subunit maturation, and it represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. Length = 211

>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258

 Score = 37.9 bits (89), Expect = 0.001
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 12/61 (19%)

Query: 43 AILGRSNVGKSSLINALVRKKELAL--TSKKPGK-------TQLINHFLVNKSWYIVDLP 93
           + G+S VGKS+L+NAL+ + +L     S+K G+        +L   F +     ++D P
Sbjct: 39 VLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTHVEL---FPLPGGGLLIDTP 95

Query: 94 G 94
          G
Sbjct: 96 G 96

Length = 161

>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction only]

 Score = 38.0 bits (89), Expect = 0.002
 Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 12/61 (19%)

Query: 43  AILGRSNVGKSSLINALVRKKELAL--TSKKPGK-------TQLINHFLVNKSWYIVDLP 93
            +LG+S VGKS+LINAL+ +        S+K G+        +L          +I+D P
Sbjct: 168 VLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELF-PL--PGGGWIIDTP 224

Query: 94  G 94
           G
Sbjct: 225 G 225

Length = 301

>gnl|CDD|206739 cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 24/129 (18%)

Query: 42  FAILGRSNVGKSSLINALVRKKEL-----ALTSKKPGKTQLINH--FLVNKSWYIVDLPG 94
            A++G  + GKS+L+NAL+ ++ L       T+        I    + + K   +VD PG
Sbjct: 3   LAVVGEFSAGKSTLLNALLGEEVLPTGVTPTTAV-------ITVLRYGLLKGVVLVDTPG 55

Query: 95  YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGRNNIPL 153
                +      +    T+ +    +    V+ ++ A  P  + + +     L  +   +
Sbjct: 56  LN---STIEHHTEI---TESFLPRAD---AVIFVLSADQPLTESEREFLKEILKWSGKKI 106

Query: 154 TFVFTKCDK 162
            FV  K D 
Sbjct: 107 FFVLNKIDL 115

The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner. Length = 180

>gnl|CDD|237511 PRK13796, PRK13796, GTPase YqeH; Provisional

 Score = 37.9 bits (89), Expect = 0.003
 Identities = 21/56 (37%), Positives = 35/56 (62%), Gaps = 6/56 (10%)

Query: 44  ILGRSNVGKSSLINALVR----KKELALTSKKPGKT-QLINHFLVNKSWYIVDLPG 94
           ++G +NVGKS+LIN +++    +K++  TS+ PG T   I   L + S ++ D PG
Sbjct: 165 VVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGS-FLYDTPG 219

Length = 365

>gnl|CDD|206753 cd04178, Nucleostemin_like, A circularly permuted subfamily of the Ras GTPases

 Score = 36.8 bits (86), Expect = 0.003
 Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 1/53 (1%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95
            ++G  NVGKSS+IN+L R +        PG T+ +    ++K   ++D PG 
Sbjct: 120 GVVGYPNVGKSSVINSLKRSRACN-VGATPGVTKSMQEVHLDKHVKLLDSPGV 171

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the protein. Length = 171

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	219
COG0218	200	Predicted GTPase [General function prediction only	99.97
TIGR03598	179	GTPase_YsxC ribosome biogenesis GTP-binding protei	99.96
PRK00454	196	engB GTP-binding protein YsxC; Reviewed	99.96
KOG0084	205	consensus GTPase Rab1/YPT1, small G protein superf	99.95
cd04120	202	Rab12 Rab12 subfamily. Rab12 was first identified	99.94
KOG0092	200	consensus GTPase Rab5/YPT51 and related small G pr	99.93
cd04121	189	Rab40 Rab40 subfamily. This subfamily contains Rab	99.93
PF02421	156	FeoB_N: Ferrous iron transport protein B; InterPro	99.93
COG1159	298	Era GTPase [General function prediction only]	99.93
cd04141	172	Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like p	99.93
cd04122	166	Rab14 Rab14 subfamily. Rab14 GTPases are localized	99.93
cd01867	167	Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Yp	99.93
cd04107	201	Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38	99.93
cd04127	180	Rab27A Rab27a subfamily. The Rab27a subfamily cons	99.93
cd01864	165	Rab19 Rab19 subfamily. Rab19 proteins are associat	99.93
cd01865	165	Rab3 Rab3 subfamily. The Rab3 subfamily contains R	99.93
cd04172	182	Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE	99.92
KOG0394	210	consensus Ras-related GTPase [General function pre	99.92
cd01875	191	RhoG RhoG subfamily. RhoG is a GTPase with high se	99.92
KOG0078	207	consensus GTP-binding protein SEC4, small G protei	99.92
cd01876	170	YihA_EngB The YihA (EngB) subfamily. This subfamil	99.92
cd04175	164	Rap1 Rap1 subgroup. The Rap1 subgroup is part of t	99.92
cd01869	166	Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in ev	99.92
TIGR00436	270	era GTP-binding protein Era. Era is an essential G	99.92
cd04119	168	RJL RJL (RabJ-Like) subfamily. RJLs are found in m	99.92
cd04108	170	Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found pr	99.92
cd04138	162	H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras,	99.92
cd04133	176	Rop_like Rop subfamily. The Rop (Rho-related prote	99.92
smart00173	164	RAS Ras subfamily of RAS small GTPases. Similar in	99.92
cd01874	175	Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPas	99.92
cd04140	165	ARHI_like ARHI subfamily. ARHI (A Ras homolog memb	99.92
cd04106	162	Rab23_lke Rab23-like subfamily. Rab23 is a member	99.92
cd04117	161	Rab15 Rab15 subfamily. Rab15 colocalizes with the	99.92
cd04131	178	Rnd Rnd subfamily. The Rnd subfamily contains Rnd1	99.92
cd04136	163	Rap_like Rap-like subfamily. The Rap subfamily con	99.92
PRK04213	201	GTP-binding protein; Provisional	99.92
cd04144	190	Ras2 Ras2 subfamily. The Ras2 subfamily, found exc	99.92
PLN03071	219	GTP-binding nuclear protein Ran; Provisional	99.92
cd04145	164	M_R_Ras_like M-Ras/R-Ras-like subfamily. This subf	99.92
cd04174	232	Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a memb	99.92
cd04110	199	Rab35 Rab35 subfamily. Rab35 is one of several Rab	99.92
cd04113	161	Rab4 Rab4 subfamily. Rab4 has been implicated in n	99.92
cd01868	165	Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 a	99.92
PTZ00369	189	Ras-like protein; Provisional	99.92
cd04142	198	RRP22 RRP22 subfamily. RRP22 (Ras-related protein	99.92
KOG0098	216	consensus GTPase Rab2, small G protein superfamily	99.91
cd04109	215	Rab28 Rab28 subfamily. First identified in maize,	99.91
cd04124	161	RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily	99.91
cd01887	168	IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryo	99.91
cd01866	168	Rab2 Rab2 subfamily. Rab2 is localized on cis-Golg	99.91
cd04128	182	Spg1 Spg1p. Spg1p (septum-promoting GTPase) was fi	99.91
PRK12297	424	obgE GTPase CgtA; Reviewed	99.91
cd04112	191	Rab26 Rab26 subfamily. First identified in rat pan	99.91
cd01871	174	Rac1_like Rac1-like subfamily. The Rac1-like subfa	99.91
cd04125	188	RabA_like RabA-like subfamily. RabA was first iden	99.91
cd04116	170	Rab9 Rab9 subfamily. Rab9 is found in late endosom	99.91
PLN03110	216	Rab GTPase; Provisional	99.91
COG1160	444	Predicted GTPases [General function prediction onl	99.91
PRK03003	472	GTP-binding protein Der; Reviewed	99.91
cd04111	211	Rab39 Rab39 subfamily. Found in eukaryotes, Rab39	99.91
smart00175	164	RAB Rab subfamily of small GTPases. Rab GTPases ar	99.91
cd00877	166	Ran Ran (Ras-related nuclear proteins) /TC4 subfam	99.91
cd01862	172	Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase th	99.91
cd04149	168	Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor	99.91
cd04134	189	Rho3 Rho3 subfamily. Rho3 is a member of the Rho f	99.91
KOG2486	320	consensus Predicted GTPase [General function predi	99.91
cd04118	193	Rab24 Rab24 subfamily. Rab24 is distinct from othe	99.91
cd04176	163	Rap2 Rap2 subgroup. The Rap2 subgroup is part of t	99.91
cd04126	220	Rab20 Rab20 subfamily. Rab20 is one of several Rab	99.91
COG1160	444	Predicted GTPases [General function prediction onl	99.91
cd04132	187	Rho4_like Rho4-like subfamily. Rho4 is a GTPase th	99.91
cd01860	163	Rab5_related Rab5-related subfamily. This subfamil	99.91
KOG0094	221	consensus GTPase Rab6/YPT6/Ryh1, small G protein s	99.91
PRK12298	390	obgE GTPase CgtA; Reviewed	99.91
cd01897	168	NOG NOG1 is a nucleolar GTP-binding protein presen	99.91
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.91
cd01861	161	Rab6 Rab6 subfamily. Rab6 is involved in microtubu	99.91
cd04154	173	Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are	99.9
PRK00093	435	GTP-binding protein Der; Reviewed	99.9
cd04115	170	Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is u	99.9
PRK12299	335	obgE GTPase CgtA; Reviewed	99.9
cd01863	161	Rab18 Rab18 subfamily. Mammalian Rab18 is implicat	99.9
PRK00089	292	era GTPase Era; Reviewed	99.9
PTZ00133	182	ADP-ribosylation factor; Provisional	99.9
PLN03118	211	Rab family protein; Provisional	99.9
cd04101	164	RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove	99.9
PLN03108	210	Rab family protein; Provisional	99.9
cd04157	162	Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a sub	99.9
PLN00223	181	ADP-ribosylation factor; Provisional	99.9
PRK15494	339	era GTPase Era; Provisional	99.9
cd04123	162	Rab21 Rab21 subfamily. The localization and functi	99.9
cd01892	169	Miro2 Miro2 subfamily. Miro (mitochondrial Rho) pr	99.9
cd04163	168	Era Era subfamily. Era (E. coli Ras-like protein)	99.9
cd01894	157	EngA1 EngA1 subfamily. This CD represents the firs	99.9
cd01895	174	EngA2 EngA2 subfamily. This CD represents the seco	99.9
smart00177	175	ARF ARF-like small GTPases; ARF, ADP-ribosylation	99.9
smart00174	174	RHO Rho (Ras homology) subfamily of Ras-like small	99.9
cd04173	222	Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a memb	99.9
cd04150	159	Arf1_5_like Arf1-Arf5-like subfamily. This subfami	99.9
cd04152	183	Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) i	99.9
cd04177	168	RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the	99.9
cd04130	173	Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive	99.9
cd01889	192	SelB_euk SelB subfamily. SelB is an elongation fac	99.89
cd04158	169	ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor	99.89
PF00071	162	Ras: Ras family; InterPro: IPR001806 Small GTPases	99.89
cd04139	164	RalA_RalB RalA/RalB subfamily. The Ral (Ras-like)	99.89
TIGR02729	329	Obg_CgtA Obg family GTPase CgtA. This model descri	99.89
cd04114	169	Rab30 Rab30 subfamily. Rab30 appears to be associa	99.89
cd04135	174	Tc10 TC10 subfamily. TC10 is a Rho family protein	99.89
cd04164	157	trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein	99.89
cd04156	160	ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor su	99.89
KOG0093	193	consensus GTPase Rab3, small G protein superfamily	99.89
cd01898	170	Obg Obg subfamily. The Obg nucleotide binding prot	99.89
cd04143	247	Rhes_like Rhes_like subfamily. This subfamily incl	99.89
cd04171	164	SelB SelB subfamily. SelB is an elongation factor	99.89
KOG0080	209	consensus GTPase Rab18, small G protein superfamil	99.89
cd01870	175	RhoA_like RhoA-like subfamily. The RhoA subfamily	99.89
cd04103	158	Centaurin_gamma Centaurin gamma. The centaurins (a	99.89
cd01893	166	Miro1 Miro1 subfamily. Miro (mitochondrial Rho) pr	99.89
PRK03003	472	GTP-binding protein Der; Reviewed	99.89
cd04148	221	RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Ki	99.89
cd04147	198	Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-v	99.89
cd01890	179	LepA LepA subfamily. LepA belongs to the GTPase fa	99.88
cd00154	159	Rab Rab family. Rab GTPases form the largest famil	99.88
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.88
cd00878	158	Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-lik	99.88
COG0486	454	ThdF Predicted GTPase [General function prediction	99.88
TIGR02528	142	EutP ethanolamine utilization protein, EutP. This	99.88
smart00176	200	RAN Ran (Ras-related nuclear proteins) /TC4 subfam	99.88
smart00178	184	SAR Sar1p-like members of the Ras-family of small	99.88
cd01878	204	HflX HflX subfamily. A distinct conserved domain w	99.88
cd04153	174	Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) a	99.88
cd04146	165	RERG_RasL11_like RERG/RasL11-like subfamily. RERG	99.88
KOG0079	198	consensus GTP-binding protein H-ray, small G prote	99.88
cd04137	180	RheB Rheb (Ras Homolog Enriched in Brain) subfamil	99.88
PF00009	188	GTP_EFTU: Elongation factor Tu GTP binding domain;	99.88
cd00157	171	Rho Rho (Ras homology) family. Members of the Rho	99.88
cd04151	158	Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes t	99.88
cd04160	167	Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related prote	99.88
cd00879	190	Sar1 Sar1 subfamily. Sar1 is an essential componen	99.88
cd00881	189	GTP_translation_factor GTP translation factor fami	99.88
cd00876	160	Ras Ras family. The Ras family of the Ras superfam	99.88
cd01879	158	FeoB Ferrous iron transport protein B (FeoB) subfa	99.88
cd04161	167	Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (	99.87
PRK12296	500	obgE GTPase CgtA; Reviewed	99.87
cd01873	195	RhoBTB RhoBTB subfamily. Members of the RhoBTB sub	99.87
KOG0091	213	consensus GTPase Rab39, small G protein superfamil	99.87
TIGR03156	351	GTP_HflX GTP-binding protein HflX. This protein fa	99.87
KOG0095	213	consensus GTPase Rab30, small G protein superfamil	99.87
TIGR03594	429	GTPase_EngA ribosome-associated GTPase EngA. EngA	99.87
KOG0087	222	consensus GTPase Rab11/YPT3, small G protein super	99.87
cd04155	173	Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf f	99.87
cd04162	164	Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9	99.87
cd04159	159	Arl10_like Arl10-like subfamily. Arl9/Arl10 was id	99.86
cd04129	187	Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that	99.86
PRK15467	158	ethanolamine utilization protein EutP; Provisional	99.86
PRK05291	449	trmE tRNA modification GTPase TrmE; Reviewed	99.86
PRK00093	435	GTP-binding protein Der; Reviewed	99.86
cd01888	203	eIF2_gamma eIF2-gamma (gamma subunit of initiation	99.86
PF10662	143	PduV-EutP: Ethanolamine utilisation - propanediol	99.85
TIGR00450	442	mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE	99.85
PRK09518	712	bifunctional cytidylate kinase/GTPase Der; Reviewe	99.85
cd00880	163	Era_like Era (E. coli Ras-like protein)-like. This	99.85
KOG0086	214	consensus GTPase Rab4, small G protein superfamily	99.85
cd01891	194	TypA_BipA TypA (tyrosine phosphorylated protein A)	99.85
PF00025	175	Arf: ADP-ribosylation factor family The prints ent	99.85
PRK11058	426	GTPase HflX; Provisional	99.84
CHL00189	742	infB translation initiation factor 2; Provisional	99.84
TIGR00487	587	IF-2 translation initiation factor IF-2. This mode	99.84
TIGR00491	590	aIF-2 translation initiation factor aIF-2/yIF-2. T	99.84
PTZ00132	215	GTP-binding nuclear protein Ran; Provisional	99.84
cd01881	176	Obg_like The Obg-like subfamily consists of five w	99.84
KOG1423	379	consensus Ras-like GTPase ERA [Cell cycle control,	99.84
KOG0395	196	consensus Ras-related GTPase [General function pre	99.83
PRK09554	772	feoB ferrous iron transport protein B; Reviewed	99.83
cd01884	195	EF_Tu EF-Tu subfamily. This subfamily includes ort	99.83
cd04165	224	GTPBP1_like GTPBP1-like. Mammalian GTP binding pro	99.83
COG1084	346	Predicted GTPase [General function prediction only	99.83
TIGR00475	581	selB selenocysteine-specific elongation factor Sel	99.83
COG0370	653	FeoB Fe2+ transport system protein B [Inorganic io	99.83
PRK05306	787	infB translation initiation factor IF-2; Validated	99.83
KOG1145	683	consensus Mitochondrial translation initiation fac	99.82
cd04102	202	RabL3 RabL3 (Rab-like3) subfamily. RabL3s are nove	99.82
TIGR00231	161	small_GTP small GTP-binding protein domain. This m	99.81
KOG0088	218	consensus GTPase Rab21, small G protein superfamil	99.81
cd04166	208	CysN_ATPS CysN_ATPS subfamily. CysN, together with	99.81
PF01926	116	MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I	99.81
TIGR01393	595	lepA GTP-binding protein LepA. LepA (GUF1 in Sacca	99.8
PRK10512	614	selenocysteinyl-tRNA-specific translation factor;	99.8
cd01852	196	AIG1 AIG1 (avrRpt2-induced gene 1). This represent	99.8
COG0536	369	Obg Predicted GTPase [General function prediction	99.8
KOG0097	215	consensus GTPase Rab14, small G protein superfamil	99.8
KOG0073	185	consensus GTP-binding ADP-ribosylation factor-like	99.79
KOG0081	219	consensus GTPase Rab27, small G protein superfamil	99.79
cd04104	197	p47_IIGP_like p47 (47-kDa) family. The p47 GTPase	99.79
PRK04004	586	translation initiation factor IF-2; Validated	99.79
cd00882	157	Ras_like_GTPase Ras-like GTPase superfamily. The R	99.79
COG2262	411	HflX GTPases [General function prediction only]	99.79
COG0532	509	InfB Translation initiation factor 2 (IF-2; GTPase	99.79
TIGR03680	406	eif2g_arch translation initiation factor 2 subunit	99.78
PRK04000	411	translation initiation factor IF-2 subunit gamma;	99.78
TIGR00437	591	feoB ferrous iron transporter FeoB. FeoB (773 amin	99.78
PRK05433	600	GTP-binding protein LepA; Provisional	99.78
PRK12736	394	elongation factor Tu; Reviewed	99.78
PRK12317	425	elongation factor 1-alpha; Reviewed	99.78
cd04105	203	SR_beta Signal recognition particle receptor, beta	99.77
KOG1489	366	consensus Predicted GTP-binding protein (ODN super	99.77
cd01896	233	DRG The developmentally regulated GTP-binding prot	99.76
COG3596	296	Predicted GTPase [General function prediction only	99.76
cd01883	219	EF1_alpha Eukaryotic elongation factor 1 (EF1) alp	99.76
KOG0075	186	consensus GTP-binding ADP-ribosylation factor-like	99.75
PLN00023	334	GTP-binding protein; Provisional	99.75
PRK12735	396	elongation factor Tu; Reviewed	99.75
CHL00071	409	tufA elongation factor Tu	99.75
COG1100	219	GTPase SAR1 and related small G proteins [General	99.75
PRK00049	396	elongation factor Tu; Reviewed	99.75
cd04168	237	TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), T	99.74
TIGR00485	394	EF-Tu translation elongation factor TU. This align	99.74
KOG1532	366	consensus GTPase XAB1, interacts with DNA repair p	99.74
PRK09866	741	hypothetical protein; Provisional	99.74
KOG1191	531	consensus Mitochondrial GTPase [Translation, ribos	99.74
TIGR02034	406	CysN sulfate adenylyltransferase, large subunit. H	99.73
KOG0083	192	consensus GTPase Rab26/Rab37, small G protein supe	99.73
PRK10218	607	GTP-binding protein; Provisional	99.73
KOG4252	246	consensus GTP-binding protein [Signal transduction	99.73
COG2229	187	Predicted GTPase [General function prediction only	99.73
PLN03127	447	Elongation factor Tu; Provisional	99.72
TIGR01394	594	TypA_BipA GTP-binding protein TypA/BipA. This bact	99.72
TIGR00483	426	EF-1_alpha translation elongation factor EF-1 alph	99.72
cd01850	276	CDC_Septin CDC/Septin. Septins are a conserved fam	99.71
PTZ00327	460	eukaryotic translation initiation factor 2 gamma s	99.71
KOG0076	197	consensus GTP-binding ADP-ribosylation factor-like	99.71
PRK05506	632	bifunctional sulfate adenylyltransferase subunit 1	99.7
KOG0393	198	consensus Ras-related small GTPase, Rho type [Gene	99.7
PLN03126	478	Elongation factor Tu; Provisional	99.7
PRK05124	474	cysN sulfate adenylyltransferase subunit 1; Provis	99.7
KOG0070	181	consensus GTP-binding ADP-ribosylation factor Arf1	99.69
cd04167	213	Snu114p Snu114p subfamily. Snu114p is one of sever	99.69
cd01886	270	EF-G Elongation factor G (EF-G) subfamily. Translo	99.68
PF08477	119	Miro: Miro-like protein; InterPro: IPR013684 Mitoc	99.68
PTZ00141	446	elongation factor 1- alpha; Provisional	99.68
cd04170	268	EF-G_bact Elongation factor G (EF-G) subfamily. Tr	99.67
KOG1490	620	consensus GTP-binding protein CRFG/NOG1 (ODN super	99.66
cd01885	222	EF2 EF2 (for archaea and eukarya). Translocation r	99.66
PTZ00099	176	rab6; Provisional	99.66
PRK00741	526	prfC peptide chain release factor 3; Provisional	99.65
COG4917	148	EutP Ethanolamine utilization protein [Amino acid	99.65
PRK13351	687	elongation factor G; Reviewed	99.65
PF04548	212	AIG1: AIG1 family; InterPro: IPR006703 This entry	99.65
PRK12739	691	elongation factor G; Reviewed	99.64
cd04169	267	RF3 RF3 subfamily. Peptide chain release factor 3	99.64
COG1163	365	DRG Predicted GTPase [General function prediction	99.64
KOG0462	650	consensus Elongation factor-type GTP-binding prote	99.63
TIGR00503	527	prfC peptide chain release factor 3. This translat	99.62
cd01853	249	Toc34_like Toc34-like (Translocon at the Outer-env	99.62
cd01882	225	BMS1 Bms1. Bms1 is an essential, evolutionarily co	99.62
PLN00043	447	elongation factor 1-alpha; Provisional	99.61
PF04670	232	Gtr1_RagA: Gtr1/RagA G protein conserved region; I	99.6
PRK00007	693	elongation factor G; Reviewed	99.6
PF09439	181	SRPRB: Signal recognition particle receptor beta s	99.59
PRK13768	253	GTPase; Provisional	99.59
TIGR00484	689	EF-G translation elongation factor EF-G. After pep	99.58
KOG0090	238	consensus Signal recognition particle receptor, be	99.58
cd01899	318	Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg	99.57
KOG3883	198	consensus Ras family small GTPase [Signal transduc	99.57
COG5256	428	TEF1 Translation elongation factor EF-1alpha (GTPa	99.56
PRK14845	1049	translation initiation factor IF-2; Provisional	99.56
PRK09602	396	translation-associated GTPase; Reviewed	99.55
COG0481	603	LepA Membrane GTPase LepA [Cell envelope biogenesi	99.54
PRK09435	332	membrane ATPase/protein kinase; Provisional	99.54
TIGR00991	313	3a0901s02IAP34 GTP-binding protein (Chloroplast En	99.53
KOG0461	522	consensus Selenocysteine-specific elongation facto	99.52
KOG0071	180	consensus GTP-binding ADP-ribosylation factor Arf6	99.52
KOG0072	182	consensus GTP-binding ADP-ribosylation factor-like	99.51
PF05049	376	IIGP: Interferon-inducible GTPase (IIGP); InterPro	99.51
smart00053	240	DYNc Dynamin, GTPase. Large GTPases that mediate v	99.5
KOG0074	185	consensus GTP-binding ADP-ribosylation factor-like	99.48
PRK12740	668	elongation factor G; Reviewed	99.48
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	99.48
COG1217	603	TypA Predicted membrane GTPase involved in stress	99.47
COG3276	447	SelB Selenocysteine-specific translation elongatio	99.47
KOG1144	1064	consensus Translation initiation factor 5B (eIF-5B	99.46
PLN00116	843	translation elongation factor EF-2 subunit; Provis	99.46
PTZ00416	836	elongation factor 2; Provisional	99.46
TIGR00073	207	hypB hydrogenase accessory protein HypB. HypB is i	99.45
PF03308	266	ArgK: ArgK protein; InterPro: IPR005129 Bacterial	99.44
PF00735	281	Septin: Septin; InterPro: IPR000038 Septins consti	99.44
TIGR00993	763	3a0901s04IAP86 chloroplast protein import componen	99.43
TIGR00101	199	ureG urease accessory protein UreG. This model rep	99.43
COG1703	323	ArgK Putative periplasmic protein kinase ArgK and	99.43
TIGR02836	492	spore_IV_A stage IV sporulation protein A. A compa	99.42
PRK07560	731	elongation factor EF-2; Reviewed	99.42
PTZ00258	390	GTP-binding protein; Provisional	99.42
COG5257	415	GCD11 Translation initiation factor 2, gamma subun	99.41
TIGR00490	720	aEF-2 translation elongation factor aEF-2. This mo	99.41
COG0378	202	HypB Ni2+-binding GTPase involved in regulation of	99.41
PF03029	238	ATP_bind_1: Conserved hypothetical ATP binding pro	99.41
PF00350	168	Dynamin_N: Dynamin family; InterPro: IPR001401 Mem	99.41
COG2895	431	CysN GTPases - Sulfate adenylate transferase subun	99.4
TIGR00750	300	lao LAO/AO transport system ATPase. Mutations have	99.38
COG4108	528	PrfC Peptide chain release factor RF-3 [Translatio	99.34
COG5019	373	CDC3 Septin family protein [Cell division and chro	99.34
PRK10463	290	hydrogenase nickel incorporation protein HypB; Pro	99.34
KOG0410	410	consensus Predicted GTP binding protein [General f	99.33
KOG0077	193	consensus Vesicle coat complex COPII, GTPase subun	99.33
KOG0096	216	consensus GTPase Ran/TC4/GSP1 (nuclear protein tra	99.31
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.27
KOG2655	366	consensus Septin family protein (P-loop GTPase) [C	99.26
COG0480	697	FusA Translation elongation factors (GTPases) [Tra	99.26
KOG0458	603	consensus Elongation factor 1 alpha [Translation,	99.25
KOG1673	205	consensus Ras GTPases [General function prediction	99.24
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	99.24
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	99.22
KOG1547	336	consensus Septin CDC10 and related P-loop GTPases	99.2
KOG1954	532	consensus Endocytosis/signaling protein EHD1 [Sign	99.18
PRK09601	364	GTP-binding protein YchF; Reviewed	99.17
COG0050	394	TufB GTPases - translation elongation factors [Tra	99.17
cd01900	274	YchF YchF subfamily. YchF is a member of the Obg f	99.14
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	99.13
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	99.12
cd01858	157	NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei	99.1
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.09
KOG1486	364	consensus GTP-binding protein DRG2 (ODN superfamil	99.07
KOG4423	229	consensus GTP-binding protein-like, RAS superfamil	99.07
KOG3886	295	consensus GTP-binding protein [Signal transduction	99.06
PRK09563	287	rbgA GTPase YlqF; Reviewed	99.06
COG1161	322	Predicted GTPases [General function prediction onl	99.05
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.05
COG5258	527	GTPBP1 GTPase [General function prediction only]	99.04
cd01855	190	YqeH YqeH. YqeH is an essential GTP-binding protei	99.04
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	99.02
cd01849	155	YlqF_related_GTPase YlqF-related GTPases. These pr	99.02
KOG0448	749	consensus Mitofusin 1 GTPase, involved in mitochon	98.98
KOG3905	473	consensus Dynein light intermediate chain [Cell mo	98.97
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.97
cd01856	171	YlqF YlqF. Proteins of the YlqF family contain all	98.96
PF03193	161	DUF258: Protein of unknown function, DUF258; Inter	98.95
PRK12288	347	GTPase RsgA; Reviewed	98.95
cd01857	141	HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t	98.95
cd01859	156	MJ1464 MJ1464. This family represents archaeal GTP	98.93
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.92
KOG0460	449	consensus Mitochondrial translation elongation fac	98.92
PRK12289	352	GTPase RsgA; Reviewed	98.91
KOG1707	625	consensus Predicted Ras related/Rac-GTP binding pr	98.91
TIGR03596	276	GTPase_YlqF ribosome biogenesis GTP-binding protei	98.91
TIGR03348	1169	VI_IcmF type VI secretion protein IcmF. Members of	98.86
TIGR03597	360	GTPase_YqeH ribosome biogenesis GTPase YqeH. This	98.85
cd01851	224	GBP Guanylate-binding protein (GBP), N-terminal do	98.85
TIGR00157	245	ribosome small subunit-dependent GTPase A. The Aqu	98.84
PRK13796	365	GTPase YqeH; Provisional	98.83
COG1162	301	Predicted GTPases [General function prediction onl	98.83
KOG0468	971	consensus U5 snRNP-specific protein [Translation,	98.83
PRK09563	287	rbgA GTPase YlqF; Reviewed	98.83
KOG1143	591	consensus Predicted translation elongation factor	98.83
smart00010	124	small_GTPase Small GTPase of the Ras superfamily;	98.8
KOG0463	641	consensus GTP-binding protein GP-1 [General functi	98.79
PRK00098	298	GTPase RsgA; Reviewed	98.79
KOG0464	753	consensus Elongation factor G [Translation, riboso	98.78
KOG1487	358	consensus GTP-binding protein DRG1 (ODN superfamil	98.78
KOG0466	466	consensus Translation initiation factor 2, gamma s	98.78
COG0012	372	Predicted GTPase, probable translation factor [Tra	98.77
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	98.77
PF05783	472	DLIC: Dynein light intermediate chain (DLIC); Inte	98.76
KOG0467	887	consensus Translation elongation factor 2/ribosome	98.73
PRK12289	352	GTPase RsgA; Reviewed	98.72
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.69
COG5192	1077	BMS1 GTP-binding protein required for 40S ribosome	98.67
KOG0465	721	consensus Mitochondrial elongation factor [Transla	98.65
PRK00098	298	GTPase RsgA; Reviewed	98.64
cd00066	317	G-alpha G protein alpha subunit. The alpha subunit	98.62
KOG0447	980	consensus Dynamin-like GTP binding protein [Genera	98.62
PRK10416	318	signal recognition particle-docking protein FtsY;	98.59
KOG2423	572	consensus Nucleolar GTPase [General function predi	98.57
cd03112	158	CobW_like The function of this protein family is u	98.57
COG3523	1188	IcmF Type VI protein secretion system component Va	98.56
PRK14974	336	cell division protein FtsY; Provisional	98.54
TIGR00092	368	GTP-binding protein YchF. This predicted GTP-bindi	98.54
TIGR00064	272	ftsY signal recognition particle-docking protein F	98.52
smart00275	342	G_alpha G protein alpha subunit. Subunit of G prot	98.51
PRK13796	365	GTPase YqeH; Provisional	98.51
COG0523	323	Putative GTPases (G3E family) [General function pr	98.5
KOG1491	391	consensus Predicted GTP-binding protein (ODN super	98.49
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	98.48
PRK12288	347	GTPase RsgA; Reviewed	98.48
KOG2484	435	consensus GTPase [General function prediction only	98.45
KOG3859	406	consensus Septins (P-loop GTPases) [Cell cycle con	98.41
cd04178	172	Nucleostemin_like Nucleostemin-like. Nucleostemin	98.4
TIGR02475	341	CobW cobalamin biosynthesis protein CobW. A broade	98.38
PF00448	196	SRP54: SRP54-type protein, GTPase domain; InterPro	98.38
TIGR01425	429	SRP54_euk signal recognition particle protein SRP5	98.37
PRK11889	436	flhF flagellar biosynthesis regulator FlhF; Provis	98.35
PRK14722	374	flhF flagellar biosynthesis regulator FlhF; Provis	98.32
PRK01889	356	GTPase RsgA; Reviewed	98.31
cd03114	148	ArgK-like The function of this protein family is u	98.29
PRK12727	559	flagellar biosynthesis regulator FlhF; Provisional	98.26
PF02492	178	cobW: CobW/HypB/UreG, nucleotide-binding domain; I	98.25
KOG3887	347	consensus Predicted small GTPase involved in nucle	98.23
KOG0459	501	consensus Polypeptide release factor 3 [Translatio	98.22
KOG1534	273	consensus Putative transcription factor FET5 [Tran	98.19
KOG0705	749	consensus GTPase-activating protein Centaurin gamm	98.18
PRK11537	318	putative GTP-binding protein YjiA; Provisional	98.17
KOG2485	335	consensus Conserved ATP/GTP binding protein [Gener	98.16
COG1618	179	Predicted nucleotide kinase [Nucleotide transport	98.15
PRK00771	437	signal recognition particle protein Srp54; Provisi	98.13
PRK14723	767	flhF flagellar biosynthesis regulator FlhF; Provis	98.1
KOG2743	391	consensus Cobalamin synthesis protein [Coenzyme tr	98.08
PRK14721	420	flhF flagellar biosynthesis regulator FlhF; Provis	98.06
KOG2484	435	consensus GTPase [General function prediction only	98.04
PRK05703	424	flhF flagellar biosynthesis regulator FlhF; Valida	98.03
COG1419	407	FlhF Flagellar GTP-binding protein [Cell motility	98.02
PRK10867	433	signal recognition particle protein; Provisional	98.0
PRK12724	432	flagellar biosynthesis regulator FlhF; Provisional	97.98
PRK12726	407	flagellar biosynthesis regulator FlhF; Provisional	97.96
cd03115	173	SRP The signal recognition particle (SRP) mediates	97.96
cd02038	139	FleN-like FleN is a member of the Fer4_NifH superf	97.95
KOG1424	562	consensus Predicted GTP-binding protein MMR1 [Gene	97.95
KOG2423	572	consensus Nucleolar GTPase [General function predi	97.94
TIGR00959	428	ffh signal recognition particle protein. This mode	97.94
COG1161	322	Predicted GTPases [General function prediction onl	97.92
PRK06731	270	flhF flagellar biosynthesis regulator FlhF; Valida	97.91
PRK01889	356	GTPase RsgA; Reviewed	97.89
PF09547	492	Spore_IV_A: Stage IV sporulation protein A (spore_	97.89
PRK06995	484	flhF flagellar biosynthesis regulator FlhF; Valida	97.88
COG1162	301	Predicted GTPases [General function prediction onl	97.87
COG3640	255	CooC CO dehydrogenase maturation factor [Cell divi	97.85
PRK13695	174	putative NTPase; Provisional	97.85
PRK12723	388	flagellar biosynthesis regulator FlhF; Provisional	97.85
KOG0082	354	consensus G-protein alpha subunit (small G protein	97.78
PF06858	58	NOG1: Nucleolar GTP-binding protein 1 (NOG1); Inte	97.69
KOG0446	657	consensus Vacuolar sorting protein VPS1, dynamin,	97.67
TIGR03574	249	selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem	97.62
PF13207	121	AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6	97.53
cd03111	106	CpaE_like This protein family consists of proteins	97.52
KOG0469	842	consensus Elongation factor 2 [Translation, riboso	97.5
KOG1533	290	consensus Predicted GTPase [General function predi	97.5
PF00004	132	AAA: ATPase family associated with various cellula	97.46
PF08433	270	KTI12: Chromatin associated protein KTI12 ; InterP	97.46
COG3840	231	ThiQ ABC-type thiamine transport system, ATPase co	97.43
COG1116	248	TauB ABC-type nitrate/sulfonate/bicarbonate transp	97.41
PRK14737	186	gmk guanylate kinase; Provisional	97.41
COG0194	191	Gmk Guanylate kinase [Nucleotide transport and met	97.4
COG1136	226	SalX ABC-type antimicrobial peptide transport syst	97.38
COG0563	178	Adk Adenylate kinase and related kinases [Nucleoti	97.37
PF13555	62	AAA_29: P-loop containing region of AAA domain	97.37
PRK07261	171	topology modulation protein; Provisional	97.36
cd00071	137	GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.	97.36
PRK08118	167	topology modulation protein; Reviewed	97.34
KOG0780	483	consensus Signal recognition particle, subunit Srp	97.31
cd02019	69	NK Nucleoside/nucleotide kinase (NK) is a protein	97.28
PF00005	137	ABC_tran: ABC transporter This structure is on hol	97.25
cd01983	99	Fer4_NifH The Fer4_NifH superfamily contains a var	97.22
TIGR03263	180	guanyl_kin guanylate kinase. Members of this famil	97.2
KOG4181	491	consensus Uncharacterized conserved protein [Funct	97.2
PF13671	143	AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1	97.2
cd02036	179	MinD Bacterial cell division requires the formatio	97.18
PF03205	140	MobB: Molybdopterin guanine dinucleotide synthesis	97.17
PF13521	163	AAA_28: AAA domain; PDB: 1LW7_A.	97.14
PRK14738	206	gmk guanylate kinase; Provisional	97.11
PRK10078	186	ribose 1,5-bisphosphokinase; Provisional	97.09
COG1126	240	GlnQ ABC-type polar amino acid transport system, A	97.09
cd02042	104	ParA ParA and ParB of Caulobacter crescentus belon	97.09
cd00820	107	PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC	97.08
PRK14530	215	adenylate kinase; Provisional	97.07
PF13238	129	AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB	97.06
KOG3347	176	consensus Predicted nucleotide kinase/nuclear prot	97.05
PRK06217	183	hypothetical protein; Validated	97.04
TIGR00235	207	udk uridine kinase. Model contains a number of lon	97.03
TIGR02322	179	phosphon_PhnN phosphonate metabolism protein/1,5-b	97.02
COG3839	338	MalK ABC-type sugar transport systems, ATPase comp	97.02
PRK08233	182	hypothetical protein; Provisional	96.99
COG4525	259	TauB ABC-type taurine transport system, ATPase com	96.99
smart00382	148	AAA ATPases associated with a variety of cellular	96.99
cd03222	177	ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi	96.99
PRK10751	173	molybdopterin-guanine dinucleotide biosynthesis pr	96.99
TIGR01360	188	aden_kin_iso1 adenylate kinase, isozyme 1 subfamil	96.98
PF07015	231	VirC1: VirC1 protein; InterPro: IPR009744 This fam	96.98
cd01130	186	VirB11-like_ATPase Type IV secretory pathway compo	96.97
PRK05480	209	uridine/cytidine kinase; Provisional	96.96
KOG0054	1381	consensus Multidrug resistance-associated protein/	96.95
cd02023	198	UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.	96.95
COG0541	451	Ffh Signal recognition particle GTPase [Intracellu	96.94
PRK03839	180	putative kinase; Provisional	96.94
cd03238	176	ABC_UvrA The excision repair protein UvrA; Nucleot	96.93
cd03225	211	ABC_cobalt_CbiO_domain1 Domain I of the ABC compon	96.93
TIGR00960	216	3a0501s02 Type II (General) Secretory Pathway (IIS	96.92
cd03255	218	ABC_MJ0796_Lo1CDE_FtsE This family is comprised of	96.91
cd03261	235	ABC_Org_Solvent_Resistant ABC (ATP-binding cassett	96.91
cd03226	205	ABC_cobalt_CbiO_domain2 Domain II of the ABC compo	96.91
COG0552	340	FtsY Signal recognition particle GTPase [Intracell	96.9
cd02025	220	PanK Pantothenate kinase (PanK) catalyzes the phos	96.89
cd01131	198	PilT Pilus retraction ATPase PilT. PilT is a nucle	96.88
TIGR01166	190	cbiO cobalt transport protein ATP-binding subunit.	96.87
TIGR02673	214	FtsE cell division ATP-binding protein FtsE. This	96.87
cd03264	211	ABC_drug_resistance_like ABC-type multidrug transp	96.86
TIGR03608	206	L_ocin_972_ABC putative bacteriocin export ABC tra	96.86
cd03292	214	ABC_FtsE_transporter FtsE is a hydrophilic nucleot	96.86
cd03221	144	ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is	96.86
cd03229	178	ABC_Class3 This class is comprised of all BPD (Bin	96.85
cd03265	220	ABC_DrrA DrrA is the ATP-binding protein component	96.85
COG3638	258	ABC-type phosphate/phosphonate transport system, A	96.84

>COG0218 Predicted GTPase [General function prediction only]

Probab=99.97  E-value=2.4e-29  Score=182.97  Aligned_cols=194  Identities=40%  Similarity=0.644  Sum_probs=168.0

Q ss_pred             cceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757           20 KEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      .+++|+.++...+++|....+-|+++|.+|+|||||+|+|+++...+.++.+||.|+.+.++..++.+.++|.||++...
T Consensus         5 ~~~~f~~sa~~~~~~P~~~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNff~~~~~~~lVDlPGYGyAk   84 (200)
T COG0218           5 HKAKFITSAPDIKQYPEDDLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINFFEVDDELRLVDLPGYGYAK   84 (200)
T ss_pred             cccEEEEecCCHhhCCCCCCcEEEEEccCcccHHHHHHHHhCCcceeecCCCCCccceeEEEEecCcEEEEeCCCccccc
Confidence            57889999999999999999999999999999999999999987889999999999999999999999999999999988


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                      -....++.|..+...|+..++...++++++|+..+....+.+..+|+...++|+++|+||+|..+..+.   ...+....
T Consensus        85 v~k~~~e~w~~~i~~YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~---~k~l~~v~  161 (200)
T COG0218          85 VPKEVKEKWKKLIEEYLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSER---NKQLNKVA  161 (200)
T ss_pred             CCHHHHHHHHHHHHHHHhhchhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChhHH---HHHHHHHH
Confidence            888889999999999999999999999999999999999999999999999999999999999875311   11122333


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +.+.........++.+|+..+.|++++...|.+....
T Consensus       162 ~~l~~~~~~~~~~~~~ss~~k~Gi~~l~~~i~~~~~~  198 (200)
T COG0218         162 EELKKPPPDDQWVVLFSSLKKKGIDELKAKILEWLKE  198 (200)
T ss_pred             HHhcCCCCccceEEEEecccccCHHHHHHHHHHHhhc
Confidence            3333333332238999999999999999999887654

>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB

Probab=99.96  E-value=4.6e-28  Score=179.58  Aligned_cols=179  Identities=45%  Similarity=0.745  Sum_probs=139.7

Q ss_pred             eeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCC
Q 027757           22 VEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        22 ~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~  101 (219)
                      ++|+.++....+.+....++|+|+|.+|+|||||+|+|++..+...+++.+++|..+..+..+..+.++||||+......
T Consensus         1 ~~~~~~~~~~~~~~~~~~~~i~ivG~~~~GKStlin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpG~~~~~~~   80 (179)
T TIGR03598         1 AEFVKSAVKLKQLPPDDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFEVNDGFRLVDLPGYGYAKVS   80 (179)
T ss_pred             CEEEeeeccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCcceEEEEEEeCCcEEEEeCCCCccccCC
Confidence            36888888899999999999999999999999999999997556777888888887776666678999999998655444


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL  181 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  181 (219)
                      ......|..+...|++....+|++++|+|++++.+..+.....++...++|+++|+||+|+......   ....+++.+.
T Consensus        81 ~~~~~~~~~~~~~~l~~~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~~~~---~~~~~~i~~~  157 (179)
T TIGR03598        81 KEEKEKWQKLIEEYLEKRENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKKSEL---NKQLKKIKKA  157 (179)
T ss_pred             hhHHHHHHHHHHHHHHhChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCHHHH---HHHHHHHHHH
Confidence            4455667777778888766679999999999887777777677777788999999999998754211   1223334444


Q ss_pred             HHhcCCCCCCeEEeecCCCCChH
Q 027757          182 IRENYPHHPPWIMTSSVTGLGRD  204 (219)
Q Consensus       182 ~~~~~~~~~~~~~~Sa~~~~~v~  204 (219)
                      +... ....+++++||++|.|++
T Consensus       158 l~~~-~~~~~v~~~Sa~~g~gi~  179 (179)
T TIGR03598       158 LKKD-ADDPSVQLFSSLKKTGID  179 (179)
T ss_pred             Hhhc-cCCCceEEEECCCCCCCC
Confidence            4432 233589999999999974

Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.

>PRK00454 engB GTP-binding protein YsxC; Reviewed

Probab=99.96  E-value=3e-27  Score=177.58  Aligned_cols=191  Identities=42%  Similarity=0.676  Sum_probs=148.7

Q ss_pred             cceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757           20 KEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      -++++..+....++.+....++|+++|.+|+|||||+|+|++..+...+.+.+++|..+..+..+.++.+|||||+....
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~v~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~l~l~DtpG~~~~~   84 (196)
T PRK00454          5 HNAEFVTSAPKLEQLPPDDGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINFFEVNDKLRLVDLPGYGYAK   84 (196)
T ss_pred             hHHHHHHhhccHhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCCcccccCCCCceeEEEEEecCCeEEEeCCCCCCCcC
Confidence            35566667767777778889999999999999999999999976677888888888877766666789999999987666


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                      .....+..+..+...+++....++++++|+|++.+.+..+.....++...++|+++++||+|+......+   ...+.+.
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~~~~~---~~~~~i~  161 (196)
T PRK00454         85 VSKEEKEKWQKLIEEYLRTRENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKKGERK---KQLKKVR  161 (196)
T ss_pred             CCchHHHHHHHHHHHHHHhCccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCHHHHH---HHHHHHH
Confidence            6666677788888888888777789999999988776665566677777889999999999987642211   1111222


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +.+...   ..+++++||+++.|+++++++|.++++.
T Consensus       162 ~~l~~~---~~~~~~~Sa~~~~gi~~l~~~i~~~~~~  195 (196)
T PRK00454        162 KALKFG---DDEVILFSSLKKQGIDELRAAIAKWLAE  195 (196)
T ss_pred             HHHHhc---CCceEEEEcCCCCCHHHHHHHHHHHhcC
Confidence            222221   3689999999999999999999988763

>KOG0084 consensus GTPase Rab1/YPT1, small G protein superfamily, and related GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=2.5e-26  Score=165.11  Aligned_cols=159  Identities=18%  Similarity=0.263  Sum_probs=131.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+||+|+|++|+|||+|+.+|....+...+..+.|+...+..+..++   ++.+|||.          ||++|+.+..
T Consensus         7 dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTA----------GQERFrtit~   76 (205)
T KOG0084|consen    7 DYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTA----------GQERFRTITS   76 (205)
T ss_pred             ceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeecc----------ccHHHhhhhH
Confidence            4578999999999999999999999988888899999888776666655   45666665          4899999999


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .|||+   |++||+|+|+++..++...  ..|+.+      .++|.++|+||||+.+.  +.+..++.+++...+..   
T Consensus        77 syYR~---ahGii~vyDiT~~~SF~~v--~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~--~~v~~~~a~~fa~~~~~---  146 (205)
T KOG0084|consen   77 SYYRG---AHGIIFVYDITKQESFNNV--KRWIQEIDRYASENVPKLLVGNKCDLTEK--RVVSTEEAQEFADELGI---  146 (205)
T ss_pred             hhccC---CCeEEEEEEcccHHHhhhH--HHHHHHhhhhccCCCCeEEEeeccccHhh--eecCHHHHHHHHHhcCC---
Confidence            99999   9999999999998888654  456664      67899999999999876  55666667777766553   


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                        ++++++||++..|+++.|..+...++..
T Consensus       147 --~~f~ETSAK~~~NVe~~F~~la~~lk~~  174 (205)
T KOG0084|consen  147 --PIFLETSAKDSTNVEDAFLTLAKELKQR  174 (205)
T ss_pred             --cceeecccCCccCHHHHHHHHHHHHHHh
Confidence              2399999999999999999998877654

>cd04120 Rab12 Rab12 subfamily

Probab=99.94  E-value=7.2e-25  Score=164.81  Aligned_cols=156  Identities=20%  Similarity=0.216  Sum_probs=114.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +.|+++|..|+|||||+++|....+...+.++.+..........++   .+.+|||+|          ++.|..++..|+
T Consensus         1 ~~vvvlG~~gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~~~~v~l~iwDtaG----------qe~~~~l~~~y~   70 (202)
T cd04120           1 LQVIIIGSRGVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELRGKKIRLQIWDTAG----------QERFNSITSAYY   70 (202)
T ss_pred             CEEEEECcCCCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEECCEEEEEEEEeCCC----------chhhHHHHHHHh
Confidence            3689999999999999999998766666666666554433344433   578899987          456788889999


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH-HHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC-ANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      ++   +|++|+|+|++++.++..... ...+.   ..+.|+++|+||+|+...  +++...+.+++.+...     ...+
T Consensus        71 ~~---ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~~--~~v~~~~~~~~a~~~~-----~~~~  140 (202)
T cd04120          71 RS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD--REISRQQGEKFAQQIT-----GMRF  140 (202)
T ss_pred             cC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccccc--cccCHHHHHHHHHhcC-----CCEE
Confidence            98   999999999999888765421 11121   257899999999998653  3343444444433321     1579


Q ss_pred             EEeecCCCCChHHHHHHHHHHHh
Q 027757          193 IMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++||++|.|++++|+++.+.+.
T Consensus       141 ~etSAktg~gV~e~F~~l~~~~~  163 (202)
T cd04120         141 CEASAKDNFNVDEIFLKLVDDIL  163 (202)
T ss_pred             EEecCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999987654

Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic

>KOG0092 consensus GTPase Rab5/YPT51 and related small G protein superfamily GTPases [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=8.6e-26  Score=161.74  Aligned_cols=154  Identities=21%  Similarity=0.272  Sum_probs=122.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ...||+++|..++|||||+-+|....|.....++.|.......+..+.   ++.+|||.|          |++|+++.++
T Consensus         4 ~~~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~~~~ikfeIWDTAG----------QERy~slapM   73 (200)
T KOG0092|consen    4 REFKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVDDNTIKFEIWDTAG----------QERYHSLAPM   73 (200)
T ss_pred             ceEEEEEECCCCCCchhhhhhhhhCccccccccccccEEEEEEEEeCCcEEEEEEEEcCC----------cccccccccc
Confidence            468999999999999999999999877777677777555444444444   566777765          7889999999


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      |||+   +++.|+|+|+++..++..  ...|+++      .++-+.+|+||+|+...  +++..++...+.+..+     
T Consensus        74 YyRg---A~AAivvYDit~~~SF~~--aK~WvkeL~~~~~~~~vialvGNK~DL~~~--R~V~~~ea~~yAe~~g-----  141 (200)
T KOG0092|consen   74 YYRG---ANAAIVVYDITDEESFEK--AKNWVKELQRQASPNIVIALVGNKADLLER--REVEFEEAQAYAESQG-----  141 (200)
T ss_pred             eecC---CcEEEEEEecccHHHHHH--HHHHHHHHHhhCCCCeEEEEecchhhhhhc--ccccHHHHHHHHHhcC-----
Confidence            9999   999999999999888754  4566664      45667779999999874  5566666777666543     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                       ..++++||+++.|++++|..|.+.+
T Consensus       142 -ll~~ETSAKTg~Nv~~if~~Ia~~l  166 (200)
T KOG0092|consen  142 -LLFFETSAKTGENVNEIFQAIAEKL  166 (200)
T ss_pred             -CEEEEEecccccCHHHHHHHHHHhc
Confidence             6899999999999999999998754

>cd04121 Rab40 Rab40 subfamily

Probab=99.93  E-value=1.3e-24  Score=161.95  Aligned_cols=155  Identities=14%  Similarity=0.215  Sum_probs=115.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|..|+|||||+.+|....+...+.+..+..........++   .+.+|||+|          +..|..++..
T Consensus         5 ~~~KivviG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~iwDt~G----------~~~~~~l~~~   74 (189)
T cd04121           5 YLLKFLLVGDSDVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSG----------QGRFCTIFRS   74 (189)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEECCEEEEEEEEeCCC----------cHHHHHHHHH
Confidence            468999999999999999999998766555555555444333333333   577899987          3556788888


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++.   +|++|+|+|++++.++....  .|+.+     .+.|+++|+||+|+...  +.+..++.+++.+..+      
T Consensus        75 ~~~~---ad~illVfD~t~~~Sf~~~~--~w~~~i~~~~~~~piilVGNK~DL~~~--~~v~~~~~~~~a~~~~------  141 (189)
T cd04121          75 YSRG---AQGIILVYDITNRWSFDGID--RWIKEIDEHAPGVPKILVGNRLHLAFK--RQVATEQAQAYAERNG------  141 (189)
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECccchhc--cCCCHHHHHHHHHHcC------
Confidence            8887   99999999999988876642  33332     57899999999999653  3344455555554322      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+++++||++|.|++++|+++.+.+.
T Consensus       142 ~~~~e~SAk~g~~V~~~F~~l~~~i~  167 (189)
T cd04121         142 MTFFEVSPLCNFNITESFTELARIVL  167 (189)
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHH
Confidence            58999999999999999999987554

This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d

>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions

Probab=99.93  E-value=1.7e-25  Score=159.63  Aligned_cols=153  Identities=27%  Similarity=0.307  Sum_probs=110.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|.||+|||||+|+|+|..  ..+.+.+|+|.+......   +..+.++|+||+........    -+.+...++
T Consensus         1 i~ialvG~PNvGKStLfN~Ltg~~--~~v~n~pG~Tv~~~~g~~~~~~~~~~lvDlPG~ysl~~~s~----ee~v~~~~l   74 (156)
T PF02421_consen    1 IRIALVGNPNVGKSTLFNALTGAK--QKVGNWPGTTVEKKEGIFKLGDQQVELVDLPGIYSLSSKSE----EERVARDYL   74 (156)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHTTS--EEEEESTTSSSEEEEEEEEETTEEEEEEE----SSSSSSSH----HHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--ceecCCCCCCeeeeeEEEEecCceEEEEECCCcccCCCCCc----HHHHHHHHH
Confidence            479999999999999999999984  778999999887654333   35899999999633221111    134445555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      .. ...|++|+|+|+++.  ..++.+..++.+.++|+++|+||+|+........   +.+.+.+.++      +|++++|
T Consensus        75 ~~-~~~D~ii~VvDa~~l--~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~g~~i---d~~~Ls~~Lg------~pvi~~s  142 (156)
T PF02421_consen   75 LS-EKPDLIIVVVDATNL--ERNLYLTLQLLELGIPVVVVLNKMDEAERKGIEI---DAEKLSERLG------VPVIPVS  142 (156)
T ss_dssp             HH-TSSSEEEEEEEGGGH--HHHHHHHHHHHHTTSSEEEEEETHHHHHHTTEEE----HHHHHHHHT------S-EEEEB
T ss_pred             hh-cCCCEEEEECCCCCH--HHHHHHHHHHHHcCCCEEEEEeCHHHHHHcCCEE---CHHHHHHHhC------CCEEEEE
Confidence            43 337999999999974  3446777888889999999999999887654333   3455555554      7999999


Q ss_pred             cCCCCChHHHHHHH
Q 027757          197 SVTGLGRDELLLHM  210 (219)
Q Consensus       197 a~~~~~v~el~~~l  210 (219)
                      |+++.|++++++.|
T Consensus       143 a~~~~g~~~L~~~I  156 (156)
T PF02421_consen  143 ARTGEGIDELKDAI  156 (156)
T ss_dssp             TTTTBTHHHHHHHH
T ss_pred             eCCCcCHHHHHhhC
Confidence            99999999999865

FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....

>COG1159 Era GTPase [General function prediction only]

Probab=99.93  E-value=1.3e-24  Score=166.66  Aligned_cols=162  Identities=26%  Similarity=0.271  Sum_probs=128.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      --|+|+|.||+|||||+|+++|. ..+.+++.+.||+..  +.+. .+.+++++||||+....     ....+.+.+...
T Consensus         7 GfVaIiGrPNvGKSTLlN~l~G~-KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk-----~~l~~~m~~~a~   80 (298)
T COG1159           7 GFVAIIGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPK-----HALGELMNKAAR   80 (298)
T ss_pred             EEEEEEcCCCCcHHHHHHHHhcC-ceEeecCCcchhhhheeEEEEcCCceEEEEeCCCCCCcc-----hHHHHHHHHHHH
Confidence            35899999999999999999998 699999999999864  2222 35689999999987552     222355666777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      .....+|+++||+|+.++....+..++..++..+.|+++++||+|.....      ..+..+.+.+.....- ..++++|
T Consensus        81 ~sl~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~------~~l~~~~~~~~~~~~f-~~ivpiS  153 (298)
T COG1159          81 SALKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPK------TVLLKLIAFLKKLLPF-KEIVPIS  153 (298)
T ss_pred             HHhccCcEEEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcH------HHHHHHHHHHHhhCCc-ceEEEee
Confidence            77777999999999999888888888888888778999999999988752      2234555555444333 4899999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~  214 (219)
                      |+.|.|++.|.+.+...+
T Consensus       154 A~~g~n~~~L~~~i~~~L  171 (298)
T COG1159         154 ALKGDNVDTLLEIIKEYL  171 (298)
T ss_pred             ccccCCHHHHHHHHHHhC
Confidence            999999999999988754

>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily

Probab=99.93  E-value=2.5e-24  Score=158.51  Aligned_cols=156  Identities=14%  Similarity=0.158  Sum_probs=112.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||++++.+..+...+.++.+..... ....++   .+.+|||||.          ..|+.++..+
T Consensus         2 ~~ki~vvG~~~vGKTsL~~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~l~~~~   70 (172)
T cd04141           2 EYKIVMLGAGGVGKSAVTMQFISHSFPDYHDPTIEDAYKQ-QARIDNEPALLDILDTAGQ----------AEFTAMRDQY   70 (172)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCCCcCCcccceEEE-EEEECCEEEEEEEEeCCCc----------hhhHHHhHHH
Confidence            3699999999999999999999876655555555432221 222222   5788999883          3467788888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++|+|+|++++.++.... ...++.    ..++|+++|+||+|+...  +.+..++...+.+..+      +
T Consensus        71 ~~~---~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~a~~~~------~  139 (172)
T cd04141          71 MRC---GEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQ--RQVTTEEGRNLAREFN------C  139 (172)
T ss_pred             hhc---CCEEEEEEECCchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhhc--CccCHHHHHHHHHHhC------C
Confidence            887   89999999999988876643 112222    257999999999998654  3333444444443322      6


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+++.|++++|+++.+.+..
T Consensus       140 ~~~e~Sa~~~~~v~~~f~~l~~~~~~  165 (172)
T cd04141         140 PFFETSAALRHYIDDAFHGLVREIRR  165 (172)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999876543

Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign

>cd04122 Rab14 Rab14 subfamily

Probab=99.93  E-value=4e-24  Score=156.54  Aligned_cols=153  Identities=22%  Similarity=0.270  Sum_probs=111.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++.+..+.....++.+..........++   .+.+|||||          ++.+..+...+
T Consensus         2 ~~ki~iiG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~~~   71 (166)
T cd04122           2 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAG----------QERFRAVTRSY   71 (166)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEECCEEEEEEEEECCC----------cHHHHHHHHHH
Confidence            47999999999999999999998866665555555444333333333   578999998          34556777888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ++.   +|++|+|+|++++.++...  ..|+.      ..+.|+++|+||+|+...  +....++..++.+..      .
T Consensus        72 ~~~---~~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~--~~~~~~~~~~~~~~~------~  138 (166)
T cd04122          72 YRG---AAGALMVYDITRRSTYNHL--SSWLTDARNLTNPNTVIFLIGNKADLEAQ--RDVTYEEAKQFADEN------G  138 (166)
T ss_pred             hcC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccc--cCcCHHHHHHHHHHc------C
Confidence            877   8999999999997766543  33333      256899999999999754  223334444444332      2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .+++++||++|.|++++|.++.+.+
T Consensus       139 ~~~~e~Sa~~~~~i~e~f~~l~~~~  163 (166)
T cd04122         139 LLFLECSAKTGENVEDAFLETAKKI  163 (166)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            5899999999999999999988654

Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT

>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2

Probab=99.93  E-value=6.1e-24  Score=155.71  Aligned_cols=154  Identities=18%  Similarity=0.252  Sum_probs=112.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++++..+...+.++.+.+........++   .+.++||||.          +.+......+
T Consensus         3 ~~ki~vvG~~~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~g~----------~~~~~~~~~~   72 (167)
T cd01867           3 LFKLLLIGDSGVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQ----------ERFRTITTAY   72 (167)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCcCCcccccCccceEEEEEEEECCEEEEEEEEeCCch----------HHHHHHHHHH
Confidence            57999999999999999999999877666677766555443333333   5789999983          3455666777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ++.   +|++|+|+|++++.++...  ..|+.      ..+.|+++|+||+|+...  .....++..++.+...      
T Consensus        73 ~~~---ad~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~~------  139 (167)
T cd01867          73 YRG---AMGIILVYDITDEKSFENI--RNWMRNIEEHASEDVERMLVGNKCDMEEK--RVVSKEEGEALADEYG------  139 (167)
T ss_pred             hCC---CCEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEECcccccc--cCCCHHHHHHHHHHcC------
Confidence            776   8999999999987765443  23332      256899999999999753  2223333444433322      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+++++||+++.|++++|+++.+.+.
T Consensus       140 ~~~~~~Sa~~~~~v~~~~~~i~~~~~  165 (167)
T cd01867         140 IKFLETSAKANINVEEAFFTLAKDIK  165 (167)
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999988764

Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi

>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily

Probab=99.93  E-value=4e-24  Score=161.28  Aligned_cols=157  Identities=19%  Similarity=0.238  Sum_probs=112.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-C---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-K---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +||+++|++|+|||||+++|++..+...+.++.+.......+..+ +   .+.+|||||.          +.|..++..+
T Consensus         1 ~KivivG~~~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~~   70 (201)
T cd04107           1 LKVLVIGDLGVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQ----------ERFGGMTRVY   70 (201)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCCCEEEEEEEECCCc----------hhhhhhHHHH
Confidence            589999999999999999999976555556655544433333333 2   5789999984          4456777888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHH-HHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCA-NWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ++.   +|++|+|+|++++.+......+ ..+.       ..++|+++|+||+|+.+.  ..+..++..++.+..+    
T Consensus        71 ~~~---a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~----  141 (201)
T cd04107          71 YRG---AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKR--LAKDGEQMDQFCKENG----  141 (201)
T ss_pred             hCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHcC----
Confidence            888   8999999999998776543211 1111       257899999999999742  2233444555544322    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       ..+++++||+++.|++++|++|.+.+-.
T Consensus       142 -~~~~~e~Sak~~~~v~e~f~~l~~~l~~  169 (201)
T cd04107         142 -FIGWFETSAKEGINIEEAMRFLVKNILA  169 (201)
T ss_pred             -CceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             1479999999999999999999886543

Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04127 Rab27A Rab27a subfamily

Probab=99.93  E-value=5.6e-24  Score=157.67  Aligned_cols=155  Identities=21%  Similarity=0.278  Sum_probs=113.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------cCeEEEEeCCCCCCCCCCcch
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------NKSWYIVDLPGYGFAKAPDVT  104 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~~~~~liDtpg~~~~~~~~~~  104 (219)
                      ..+||+++|++|+|||||++++.+..+...+.++.+.+........             ...+.+|||||          
T Consensus         3 ~~~ki~ivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------   72 (180)
T cd04127           3 YLIKFLALGDSGVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAG----------   72 (180)
T ss_pred             ceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCC----------
Confidence            3589999999999999999999998776666666654443222221             12577899988          


Q ss_pred             hhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757          105 RMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKS  177 (219)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  177 (219)
                      ++.|..+...+++.   +|++|+|+|++++.+..+.  ..|+.       ..+.|+++|+||+|+.+.  ..+..+...+
T Consensus        73 ~~~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~v~~~~~~~  145 (180)
T cd04127          73 QERFRSLTTAFFRD---AMGFLLIFDLTNEQSFLNV--RNWMSQLQTHAYCENPDIVLCGNKADLEDQ--RQVSEEQAKA  145 (180)
T ss_pred             hHHHHHHHHHHhCC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCcEEEEEeCccchhc--CccCHHHHHH
Confidence            45677888888887   8999999999987766553  23332       246899999999998754  2233344444


Q ss_pred             HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          178 FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +.+..+      ++++++||+++.|+++++++|.+.+-
T Consensus       146 ~~~~~~------~~~~e~Sak~~~~v~~l~~~l~~~~~  177 (180)
T cd04127         146 LADKYG------IPYFETSAATGTNVEKAVERLLDLVM  177 (180)
T ss_pred             HHHHcC------CeEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            444432      58999999999999999999987553

The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated

>cd01864 Rab19 Rab19 subfamily

Probab=99.93  E-value=5.6e-24  Score=155.56  Aligned_cols=155  Identities=17%  Similarity=0.195  Sum_probs=109.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++.+..+.....++.+..........++   .+.++||||          ++.|..+...+
T Consensus         3 ~~kv~vvG~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~~~   72 (165)
T cd01864           3 LFKIILIGDSNVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAG----------QERFRTITQSY   72 (165)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEECCEEEEEEEEECCC----------hHHHHHHHHHH
Confidence            57999999999999999999998765555555555444444444443   678999999          33456677777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CAN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++++|+|++++.+..... .+.   .....+.|+++|+||+|+....  +...+...++.+...    . ..
T Consensus        73 ~~~---~d~~llv~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~~--~~~~~~~~~~~~~~~----~-~~  142 (165)
T cd01864          73 YRS---ANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQR--EVLFEEACTLAEKNG----M-LA  142 (165)
T ss_pred             hcc---CCEEEEEEECcCHHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccccc--ccCHHHHHHHHHHcC----C-cE
Confidence            777   89999999999987654421 111   1223578999999999987542  222233334333322    1 46


Q ss_pred             eEEeecCCCCChHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ++++||++|.|++++++++.+.
T Consensus       143 ~~e~Sa~~~~~v~~~~~~l~~~  164 (165)
T cd01864         143 VLETSAKESQNVEEAFLLMATE  164 (165)
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            8999999999999999999864

Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd01865 Rab3 Rab3 subfamily

Probab=99.93  E-value=6.6e-24  Score=155.24  Aligned_cols=153  Identities=16%  Similarity=0.243  Sum_probs=109.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|.+..+...+.++.+..........+   ..+.+|||||.          ..|..++..++
T Consensus         2 ~ki~i~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~g~----------~~~~~~~~~~~   71 (165)
T cd01865           2 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQ----------ERYRTITTAYY   71 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh----------HHHHHHHHHHc
Confidence            689999999999999999999986655556655544433333332   25889999983          34566777777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +.   +|++++|+|++++.+...  +..|+..      ...|+++|+||+|+.+..  ....+...++.+.+    +  .
T Consensus        72 ~~---~~~~l~v~d~~~~~s~~~--~~~~~~~i~~~~~~~~piivv~nK~Dl~~~~--~~~~~~~~~~~~~~----~--~  138 (165)
T cd01865          72 RG---AMGFILMYDITNEESFNA--VQDWSTQIKTYSWDNAQVILVGNKCDMEDER--VVSSERGRQLADQL----G--F  138 (165)
T ss_pred             cC---CcEEEEEEECCCHHHHHH--HHHHHHHHHHhCCCCCCEEEEEECcccCccc--ccCHHHHHHHHHHc----C--C
Confidence            77   899999999998765543  2333332      468999999999997542  22233333333322    2  4


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||+++.|++++++++.+.+-
T Consensus       139 ~~~~~Sa~~~~gv~~l~~~l~~~~~  163 (165)
T cd01865         139 EFFEASAKENINVKQVFERLVDIIC  163 (165)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHHHH
Confidence            7999999999999999999987653

The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot

>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily

Probab=99.92  E-value=3.1e-24  Score=159.11  Aligned_cols=157  Identities=14%  Similarity=0.154  Sum_probs=115.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+||+++|.+|+|||||+++|....+...+.++.+..... ....++   .+.+|||+|          ++.|..+..
T Consensus         3 ~~~~KivvvGd~~vGKTsli~~~~~~~f~~~~~pT~~~~~~~-~~~~~~~~~~l~iwDtaG----------~e~~~~~~~   71 (182)
T cd04172           3 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSG----------SPYYDNVRP   71 (182)
T ss_pred             cceEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeeeeEE-EEEECCEEEEEEEEECCC----------chhhHhhhh
Confidence            446799999999999999999999987766666666543322 222333   578888887          456677888


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEccccccc----------ccCCCchHhHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKV----------AKGRRPDENIKSF  178 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~  178 (219)
                      .+++.   +|++|+|+|++++.++.... ..|+..     .+.|+++|+||+|+.+.          ..+.+..++.+++
T Consensus        72 ~~~~~---ad~~ilvyDit~~~Sf~~~~-~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~  147 (182)
T cd04172          72 LSYPD---SDAVLICFDISRPETLDSVL-KKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANM  147 (182)
T ss_pred             hhcCC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHHHCCCCCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHH
Confidence            88888   89999999999987775431 233322     47899999999998642          2234555666666


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCC-hHHHHHHHHHH
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLG-RDELLLHMSQL  213 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~-v~el~~~l~~~  213 (219)
                      .+..+.     ++++++||+++.| ++++|..+.+.
T Consensus       148 a~~~~~-----~~~~E~SAk~~~n~v~~~F~~~~~~  178 (182)
T cd04172         148 AKQIGA-----ATYIECSALQSENSVRDIFHVATLA  178 (182)
T ss_pred             HHHcCC-----CEEEECCcCCCCCCHHHHHHHHHHH
Confidence            655441     3799999999998 99999998875

Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight

>KOG0394 consensus Ras-related GTPase [General function prediction only]

Probab=99.92  E-value=8e-25  Score=155.43  Aligned_cols=164  Identities=18%  Similarity=0.175  Sum_probs=127.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+||+|+|++|+|||||+|+++.++|...+--+.|...-...+.++.+.+.+       ..|+++||++|.++.-.+|
T Consensus         7 ~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtl-------QiWDTAGQERFqsLg~aFY   79 (210)
T KOG0394|consen    7 RTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTL-------QIWDTAGQERFQSLGVAFY   79 (210)
T ss_pred             ccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEE-------EEEecccHHHhhhccccee
Confidence            557899999999999999999999988777776666644433344444432211       3455556899999999999


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-----HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-----CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      |+   +|.|++++|+.++.++..++     ++.+...   ..-|+++++||+|+.....+.+.......|....+.    
T Consensus        80 Rg---aDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gn----  152 (210)
T KOG0394|consen   80 RG---ADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGN----  152 (210)
T ss_pred             cC---CceEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCC----
Confidence            99   99999999999988887753     3333332   456999999999998877777777777777776543    


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       +|||++|||...|+.+.|+.+.+.+-
T Consensus       153 -ipyfEtSAK~~~NV~~AFe~ia~~aL  178 (210)
T KOG0394|consen  153 -IPYFETSAKEATNVDEAFEEIARRAL  178 (210)
T ss_pred             -ceeEEecccccccHHHHHHHHHHHHH
Confidence             89999999999999999999987553

>cd01875 RhoG RhoG subfamily

Probab=99.92  E-value=3e-24  Score=160.69  Aligned_cols=157  Identities=14%  Similarity=0.139  Sum_probs=111.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|..|+|||||+.+|....+...+.++.+..... ....++   .+.+|||+|          ++.|+.++..|
T Consensus         3 ~~ki~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G----------~e~~~~l~~~~   71 (191)
T cd01875           3 SIKCVVVGDGAVGKTCLLICYTTNAFPKEYIPTVFDNYSA-QTAVDGRTVSLNLWDTAG----------QEEYDRLRTLS   71 (191)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCcCCCCceEeeeEE-EEEECCEEEEEEEEECCC----------chhhhhhhhhh
Confidence            4799999999999999999999886666666665533321 122233   577888887          46677888889


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ  180 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~  180 (219)
                      ++.   +|++|+|+|++++.++.... ..|..     ..+.|+++|+||+|+.+...          ..+..++.+++.+
T Consensus        72 ~~~---a~~~ilvydit~~~Sf~~~~-~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~  147 (191)
T cd01875          72 YPQ---TNVFIICFSIASPSSYENVR-HKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAK  147 (191)
T ss_pred             ccC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHH
Confidence            888   99999999999988765532 12322     25799999999999965321          1122233333333


Q ss_pred             HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..+     ..+++++||++|.|++++|+++.+.+.
T Consensus       148 ~~~-----~~~~~e~SAk~g~~v~e~f~~l~~~~~  177 (191)
T cd01875         148 QIH-----AVKYLECSALNQDGVKEVFAEAVRAVL  177 (191)
T ss_pred             HcC-----CcEEEEeCCCCCCCHHHHHHHHHHHHh
Confidence            222     147999999999999999999987653

RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin

>KOG0078 consensus GTP-binding protein SEC4, small G protein superfamily, and related Ras family GTP-binding proteins [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=4.8e-24  Score=155.43  Aligned_cols=162  Identities=17%  Similarity=0.218  Sum_probs=128.9

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      +....+||+++|.+|+|||+++-+|....+...+..+.|..........++.       -+..+.|++.||++|..+...
T Consensus         8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~-------~i~lQiWDtaGQerf~ti~~s   80 (207)
T KOG0078|consen    8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGK-------KIKLQIWDTAGQERFRTITTA   80 (207)
T ss_pred             CcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCe-------EEEEEEEEcccchhHHHHHHH
Confidence            3456789999999999999999999998776666666666655554444431       012244445568999999999


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      |+++   |+++++|+|+++..++.+.  ..|++.      ..+|.++|+||+|+..  .+++..+.-+.+.+.++     
T Consensus        81 Yyrg---A~gi~LvyDitne~Sfeni--~~W~~~I~e~a~~~v~~~LvGNK~D~~~--~R~V~~e~ge~lA~e~G-----  148 (207)
T KOG0078|consen   81 YYRG---AMGILLVYDITNEKSFENI--RNWIKNIDEHASDDVVKILVGNKCDLEE--KRQVSKERGEALAREYG-----  148 (207)
T ss_pred             HHhh---cCeeEEEEEccchHHHHHH--HHHHHHHHhhCCCCCcEEEeeccccccc--cccccHHHHHHHHHHhC-----
Confidence            9999   9999999999998888664  335552      5899999999999988  47788888888888876     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       .+++++||+++.|++|.|..|.+....
T Consensus       149 -~~F~EtSAk~~~NI~eaF~~La~~i~~  175 (207)
T KOG0078|consen  149 -IKFFETSAKTNFNIEEAFLSLARDILQ  175 (207)
T ss_pred             -CeEEEccccCCCCHHHHHHHHHHHHHh
Confidence             699999999999999999999886653

>cd01876 YihA_EngB The YihA (EngB) subfamily

Probab=99.92  E-value=5.7e-24  Score=155.38  Aligned_cols=169  Identities=47%  Similarity=0.744  Sum_probs=130.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      .|+++|.+|+|||||+|.+++........+..+++.....+..+..+.++||||+.....+...+..+......|+....
T Consensus         1 ~i~l~G~~g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (170)
T cd01876           1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFFNVNDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLENRE   80 (170)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCceeeecCCCCcceeEEEEEccCeEEEecCCCccccccCHHHHHHHHHHHHHHHHhCh
Confidence            48999999999999999999655677788888887777666667799999999987655555566777777788888777


Q ss_pred             CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757          121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG  200 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  200 (219)
                      .++++++++|..+..+.....+.+++...+.|+++|+||+|+.......   .........+.. ....++++++|++++
T Consensus        81 ~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~~~~~---~~~~~~~~~l~~-~~~~~~~~~~Sa~~~  156 (170)
T cd01876          81 NLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELA---KALKEIKKELKL-FEIDPPIILFSSLKG  156 (170)
T ss_pred             hhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCChHHHH---HHHHHHHHHHHh-ccCCCceEEEecCCC
Confidence            7889999999998766666677888888889999999999986532111   111222222221 223468999999999


Q ss_pred             CChHHHHHHHHHH
Q 027757          201 LGRDELLLHMSQL  213 (219)
Q Consensus       201 ~~v~el~~~l~~~  213 (219)
                      .|+++++++|.+.
T Consensus       157 ~~~~~l~~~l~~~  169 (170)
T cd01876         157 QGIDELRALIEKW  169 (170)
T ss_pred             CCHHHHHHHHHHh
Confidence            9999999999875

This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.

>cd04175 Rap1 Rap1 subgroup

Probab=99.92  E-value=5.1e-24  Score=155.57  Aligned_cols=155  Identities=18%  Similarity=0.232  Sum_probs=108.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++++...+...+.++.+..... ....++   .+.+|||||.          +.|..++..+
T Consensus         1 ~~ki~~~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~   69 (164)
T cd04175           1 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRK-QVEVDGQQCMLEILDTAGT----------EQFTAMRDLY   69 (164)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEEE-EEEECCEEEEEEEEECCCc----------ccchhHHHHH
Confidence            3689999999999999999999765555455554433322 222332   4678999984          3457788888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|+++..+..... ....+    ...+.|+++|+||+|+.....  ......+++.+.+.      .
T Consensus        70 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~------~  138 (164)
T cd04175          70 MKN---GQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERV--VGKEQGQNLARQWG------C  138 (164)
T ss_pred             Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchhccE--EcHHHHHHHHHHhC------C
Confidence            888   89999999998876654421 11222    236799999999999975421  22233333333322      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||+++.|+++++.++.+.+.
T Consensus       139 ~~~~~Sa~~~~~v~~~~~~l~~~l~  163 (164)
T cd04175         139 AFLETSAKAKINVNEIFYDLVRQIN  163 (164)
T ss_pred             EEEEeeCCCCCCHHHHHHHHHHHhh
Confidence            8999999999999999999987653

The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n

>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily

Probab=99.92  E-value=9.5e-24  Score=154.45  Aligned_cols=154  Identities=18%  Similarity=0.269  Sum_probs=110.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++.+..+...+.++.+.+........++   .+.+|||||.          +.|..+...+
T Consensus         2 ~~ki~i~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G~----------~~~~~~~~~~   71 (166)
T cd01869           2 LFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQ----------ERFRTITSSY   71 (166)
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HhHHHHHHHH
Confidence            36999999999999999999998765555555555444333333333   5789999993          3456677777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ++.   +|++|+|+|++++.+....  ..|+..      .+.|+++|+||+|+....  .+..++...+.+..      .
T Consensus        72 ~~~---~~~ii~v~d~~~~~s~~~l--~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~------~  138 (166)
T cd01869          72 YRG---AHGIIIVYDVTDQESFNNV--KQWLQEIDRYASENVNKLLVGNKCDLTDKR--VVDYSEAQEFADEL------G  138 (166)
T ss_pred             hCc---CCEEEEEEECcCHHHHHhH--HHHHHHHHHhCCCCCcEEEEEEChhccccc--CCCHHHHHHHHHHc------C
Confidence            777   8999999999987665443  233332      468999999999986542  23233344444332      2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+++++||++|.|++++++++.+.+.
T Consensus       139 ~~~~~~Sa~~~~~v~~~~~~i~~~~~  164 (166)
T cd01869         139 IPFLETSAKNATNVEQAFMTMAREIK  164 (166)
T ss_pred             CeEEEEECCCCcCHHHHHHHHHHHHH
Confidence            68999999999999999999988764

Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t

>TIGR00436 era GTP-binding protein Era

Probab=99.92  E-value=1.2e-23  Score=165.33  Aligned_cols=160  Identities=20%  Similarity=0.114  Sum_probs=111.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EE-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HF-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      +|+++|.+|+|||||+|+|++. ....+++.+++|+...  .. ..+.++.++||||+......     ....+......
T Consensus         2 ~V~liG~pnvGKSTLln~L~~~-~~~~vs~~~~TTr~~i~~i~~~~~~qii~vDTPG~~~~~~~-----l~~~~~~~~~~   75 (270)
T TIGR00436         2 FVAILGRPNVGKSTLLNQLHGQ-KISITSPKAQTTRNRISGIHTTGASQIIFIDTPGFHEKKHS-----LNRLMMKEARS   75 (270)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-cEeecCCCCCcccCcEEEEEEcCCcEEEEEECcCCCCCcch-----HHHHHHHHHHH
Confidence            6899999999999999999997 4667788888877532  11 22447999999997643111     11222222222


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  197 (219)
                      ..+.+|++++|+|+++..+.. ..+...+...+.|+++|+||+|+...       .........+..... ..+++++||
T Consensus        76 ~l~~aDvvl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~-------~~~~~~~~~~~~~~~-~~~v~~iSA  146 (270)
T TIGR00436        76 AIGGVDLILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFK-------DKLLPLIDKYAILED-FKDIVPISA  146 (270)
T ss_pred             HHhhCCEEEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCH-------HHHHHHHHHHHhhcC-CCceEEEec
Confidence            333489999999999876553 44556666778999999999998643       122223333332222 237999999


Q ss_pred             CCCCChHHHHHHHHHHHh
Q 027757          198 VTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       198 ~~~~~v~el~~~l~~~~~  215 (219)
                      ++|.|++++++++.+.+.
T Consensus       147 ~~g~gi~~L~~~l~~~l~  164 (270)
T TIGR00436       147 LTGDNTSFLAAFIEVHLP  164 (270)
T ss_pred             CCCCCHHHHHHHHHHhCC
Confidence            999999999999987653

Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.

>cd04119 RJL RJL (RabJ-Like) subfamily

Probab=99.92  E-value=1.2e-23  Score=153.74  Aligned_cols=152  Identities=20%  Similarity=0.249  Sum_probs=108.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|++..+...+.++.+.+........+   ..+.+|||||.          ..+..+...++
T Consensus         1 ~ki~~vG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~   70 (168)
T cd04119           1 IKVISMGNSGVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGH----------PEYLEVRNEFY   70 (168)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCeEEEEEEEECCcc----------HHHHHHHHHHh
Confidence            489999999999999999999987666666666544433333332   36789999994          33456777777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc-------c----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG-------R----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      +.   +|++|+|+|++++.+....  ..|+.       .    .+.|+++|+||+|+...  .....++...+....   
T Consensus        71 ~~---~d~~ilv~D~~~~~s~~~~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~---  140 (168)
T cd04119          71 KD---TQGVLLVYDVTDRQSFEAL--DSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKH--RAVSEDEGRLWAESK---  140 (168)
T ss_pred             cc---CCEEEEEEECCCHHHHHhH--HHHHHHHHHhccccccCCCceEEEEEEchhcccc--cccCHHHHHHHHHHc---
Confidence            77   8999999999987665432  22222       1    46899999999998642  222233333333322   


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                       +  .+++++||+++.|+++++++|.+.+
T Consensus       141 -~--~~~~~~Sa~~~~gi~~l~~~l~~~l  166 (168)
T cd04119         141 -G--FKYFETSACTGEGVNEMFQTLFSSI  166 (168)
T ss_pred             -C--CeEEEEECCCCCCHHHHHHHHHHHH
Confidence             1  5799999999999999999998754

RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.

>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily

Probab=99.92  E-value=1.2e-23  Score=154.54  Aligned_cols=155  Identities=17%  Similarity=0.217  Sum_probs=110.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ||+++|.+|+|||||++++++..+...+.++.+..........++   .+.+|||||.          +.|..+...+++
T Consensus         2 ki~ivG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~~   71 (170)
T cd04108           2 KVIVVGDLSVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQ----------ERFKCIASTYYR   71 (170)
T ss_pred             EEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhhHHHHhc
Confidence            799999999999999999999877767767666554433333333   6889999983          456677788888


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      .   +|++++|+|+++..+....  ..|+.       ..+.|+++|+||+|+.+........+....+.+.+    +  .
T Consensus        72 ~---ad~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~----~--~  140 (170)
T cd04108          72 G---AQAIIIVFDLTDVASLEHT--RQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEM----Q--A  140 (170)
T ss_pred             C---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEChhcCccccccccHHHHHHHHHHc----C--C
Confidence            7   9999999999886555432  23332       13467999999999865432222222233333322    2  5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||++|.|++++|+.+.+.+.+
T Consensus       141 ~~~e~Sa~~g~~v~~lf~~l~~~~~~  166 (170)
T cd04108         141 EYWSVSALSGENVREFFFRVAALTFE  166 (170)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            78999999999999999999887643

Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re

>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily

Probab=99.92  E-value=1.1e-23  Score=153.10  Aligned_cols=152  Identities=18%  Similarity=0.250  Sum_probs=105.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|++..+.....++.+.... .....++   .+.+|||||.          +.|..++..++
T Consensus         2 ~ki~iiG~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~----------~~~~~l~~~~~   70 (162)
T cd04138           2 YKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQ----------EEYSAMRDQYM   70 (162)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCcCCcCCcchheEE-EEEEECCEEEEEEEEECCCC----------cchHHHHHHHH
Confidence            68999999999999999999987655555554443322 2222232   3667999984          34567788888


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|+++..+..+..     +.++....+.|+++|+||+|+...   ........++.+.++      .+
T Consensus        71 ~~---~~~~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~~---~~~~~~~~~~~~~~~------~~  138 (162)
T cd04138          71 RT---GEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAAR---TVSSRQGQDLAKSYG------IP  138 (162)
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc---eecHHHHHHHHHHhC------Ce
Confidence            87   89999999999866554421     111222357899999999998752   122233333333322      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++++++++.+.+
T Consensus       139 ~~~~Sa~~~~gi~~l~~~l~~~~  161 (162)
T cd04138         139 YIETSAKTRQGVEEAFYTLVREI  161 (162)
T ss_pred             EEEecCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998653

H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.

>cd04133 Rop_like Rop subfamily

Probab=99.92  E-value=4.3e-24  Score=157.43  Aligned_cols=155  Identities=15%  Similarity=0.108  Sum_probs=112.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+.+++...+...+.++.+...... ...++   ++.+|||+|.          +.|..+...++
T Consensus         2 ~kivv~G~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~-~~~~~~~v~l~i~Dt~G~----------~~~~~~~~~~~   70 (176)
T cd04133           2 IKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSAN-VSVDGNTVNLGLWDTAGQ----------EDYNRLRPLSY   70 (176)
T ss_pred             eEEEEECCCCCcHHHHHHHHhcCCCCCCCCCcceeeeEEE-EEECCEEEEEEEEECCCC----------ccccccchhhc
Confidence            5899999999999999999999877666666665443322 22232   6789999884          34566677788


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc--------CCCchHhHHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK--------GRRPDENIKSFQQLIR  183 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~  183 (219)
                      +.   +|++|+|+|++++.++.... ..|+.     ..+.|+++|+||+|+.+...        +.+..++..++.+..+
T Consensus        71 ~~---a~~~ilvyd~~~~~Sf~~~~-~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~  146 (176)
T cd04133          71 RG---ADVFVLAFSLISRASYENVL-KKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIG  146 (176)
T ss_pred             CC---CcEEEEEEEcCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcC
Confidence            87   89999999999988876531 12333     25799999999999965321        2244444555544332


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                          . .+++++||++|.|++++|+.+.+.+
T Consensus       147 ----~-~~~~E~SAk~~~nV~~~F~~~~~~~  172 (176)
T cd04133         147 ----A-AAYIECSSKTQQNVKAVFDAAIKVV  172 (176)
T ss_pred             ----C-CEEEECCCCcccCHHHHHHHHHHHH
Confidence                1 2699999999999999999998865

The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,

>smart00173 RAS Ras subfamily of RAS small GTPases

Probab=99.92  E-value=1e-23  Score=153.85  Aligned_cols=155  Identities=19%  Similarity=0.243  Sum_probs=106.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .||+++|++|+|||||+++|++..+.....++...... .....++   .+.+|||||..          .|..+...++
T Consensus         1 ~ki~v~G~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~----------~~~~~~~~~~   69 (164)
T smart00173        1 YKLVVLGSGGVGKSALTIQFVQGHFVDDYDPTIEDSYR-KQIEIDGEVCLLDILDTAGQE----------EFSAMRDQYM   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCcccCCchhhhEE-EEEEECCEEEEEEEEECCCcc----------cchHHHHHHH
Confidence            48999999999999999999987655444444332222 1222222   56789999842          3456677777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH-HHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC-ANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|++++.+...... ..++    ...+.|+++|+||+|+.+..  ....+....+.+..+      .+
T Consensus        70 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~~~--~~~~~~~~~~~~~~~------~~  138 (164)
T smart00173       70 RT---GEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESER--VVSTEEGKELARQWG------CP  138 (164)
T ss_pred             hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--eEcHHHHHHHHHHcC------CE
Confidence            77   899999999998766544311 1122    22578999999999987532  122233333333322      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++||+++.|+++++++|.+.+..
T Consensus       139 ~~~~Sa~~~~~i~~l~~~l~~~~~~  163 (164)
T smart00173      139 FLETSAKERVNVDEAFYDLVREIRK  163 (164)
T ss_pred             EEEeecCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999887653

Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades

>cd01874 Cdc42 Cdc42 subfamily

Probab=99.92  E-value=5.8e-24  Score=156.98  Aligned_cols=156  Identities=12%  Similarity=0.106  Sum_probs=108.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+++|....+...+.++.+...... ...++   .+.+|||+|.          +.|..++..++
T Consensus         2 ~ki~vvG~~~vGKTsl~~~~~~~~f~~~~~pt~~~~~~~~-~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~   70 (175)
T cd01874           2 IKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVT-VMIGGEPYTLGLFDTAGQ----------EDYDRLRPLSY   70 (175)
T ss_pred             eEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeeEEE-EEECCEEEEEEEEECCCc----------cchhhhhhhhc
Confidence            5899999999999999999998766566666655333222 22222   5779999984          33455667777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLI  182 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~  182 (219)
                      +.   +|++|+|+|++++.++....  ....+.  ..+.|+++|+||+|+.....          +.+..++.+++.+..
T Consensus        71 ~~---a~~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~  147 (175)
T cd01874          71 PQ---TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDL  147 (175)
T ss_pred             cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHh
Confidence            77   89999999999987765432  122222  24789999999999865321          223333333333322


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +     ...++++||++|.|++++|+.+.+.+
T Consensus       148 ~-----~~~~~e~SA~tg~~v~~~f~~~~~~~  174 (175)
T cd01874         148 K-----AVKYVECSALTQKGLKNVFDEAILAA  174 (175)
T ss_pred             C-----CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence            2     15799999999999999999988743

Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi

>cd04140 ARHI_like ARHI subfamily

Probab=99.92  E-value=9.6e-24  Score=154.37  Aligned_cols=153  Identities=17%  Similarity=0.174  Sum_probs=105.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||++++++..+...+.++.+.+... ....   ...+.++||||..          .|..+...++
T Consensus         2 ~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~   70 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTFRESYIPTIEDTYRQ-VISCSKNICTLQITDTTGSH----------QFPAMQRLSI   70 (165)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCCCcCCcchheEEE-EEEECCEEEEEEEEECCCCC----------cchHHHHHHh
Confidence            689999999999999999999886655555544433321 1111   2357899999953          2345556666


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +.   +|++|+|+|++++.+..... ...++..      .++|+++|+||+|+...  +++.......+...    .  .
T Consensus        71 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~----~--~  139 (165)
T cd04140          71 SK---GHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHK--REVSSNEGAACATE----W--N  139 (165)
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECcccccc--CeecHHHHHHHHHH----h--C
Confidence            66   89999999999887765432 2222322      56899999999998653  22222222222222    1  2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++++||++|.|++++|++|.+..
T Consensus       140 ~~~~e~SA~~g~~v~~~f~~l~~~~  164 (165)
T cd04140         140 CAFMETSAKTNHNVQELFQELLNLE  164 (165)
T ss_pred             CcEEEeecCCCCCHHHHHHHHHhcc
Confidence            5899999999999999999998653

ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to

>cd04106 Rab23_lke Rab23-like subfamily

Probab=99.92  E-value=1.2e-23  Score=153.21  Aligned_cols=150  Identities=21%  Similarity=0.337  Sum_probs=109.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-----CeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-----KSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-----~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .||+++|++|+|||||++++++..+...+.++.+..........+     ..+.+|||||          ++.|..+...
T Consensus         1 ~kv~~vG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~   70 (162)
T cd04106           1 IKVIVVGNGNVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAG----------QEEFDAITKA   70 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcCCCCEEEEEEeeCCc----------hHHHHHhHHH
Confidence            489999999999999999999986665555555544332222222     2688999998          3456777788


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++.   +|++++|+|++++.+....  ..|+..     .++|+++|+||+|+....  .+..++...+.+.++      
T Consensus        71 ~~~~---~~~~v~v~d~~~~~s~~~l--~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~--~v~~~~~~~~~~~~~------  137 (162)
T cd04106          71 YYRG---AQACILVFSTTDRESFEAI--ESWKEKVEAECGDIPMVLVQTKIDLLDQA--VITNEEAEALAKRLQ------  137 (162)
T ss_pred             HhcC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEEChhccccc--CCCHHHHHHHHHHcC------
Confidence            8877   8999999999987765443  233322     579999999999997642  222334444444332      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      .+++++||+++.|+++++++|.+
T Consensus       138 ~~~~~~Sa~~~~~v~~l~~~l~~  160 (162)
T cd04106         138 LPLFRTSVKDDFNVTELFEYLAE  160 (162)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            58999999999999999999875

Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G

>cd04117 Rab15 Rab15 subfamily

Probab=99.92  E-value=1.8e-23  Score=152.42  Aligned_cols=151  Identities=19%  Similarity=0.259  Sum_probs=109.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|++|+|||||++++++..+.....++.+..........++   .+.+|||+|.          ..+..+...++
T Consensus         1 ~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~~~~~~   70 (161)
T cd04117           1 FRLLLIGDSGVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQ----------ERYQTITKQYY   70 (161)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEeCCCc----------HhHHhhHHHHh
Confidence            4899999999999999999998866655566655444333333333   5778999883          34566677777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +.   +|++++|+|++++.++...  ..|+.      ..+.|+++|+||+|+...  +.+..++...+.+.+.      +
T Consensus        71 ~~---~~~~i~v~d~~~~~sf~~~--~~~~~~~~~~~~~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~------~  137 (161)
T cd04117          71 RR---AQGIFLVYDISSERSYQHI--MKWVSDVDEYAPEGVQKILIGNKADEEQK--RQVGDEQGNKLAKEYG------M  137 (161)
T ss_pred             cC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccc--cCCCHHHHHHHHHHcC------C
Confidence            76   8999999999987776543  23333      246899999999998654  2233344444433322      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +++++||+++.|++++|++|.+.
T Consensus       138 ~~~e~Sa~~~~~v~~~f~~l~~~  160 (161)
T cd04117         138 DFFETSACTNSNIKESFTRLTEL  160 (161)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHhh
Confidence            89999999999999999999764

Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to

>cd04131 Rnd Rnd subfamily

Probab=99.92  E-value=9.5e-24  Score=156.11  Aligned_cols=155  Identities=14%  Similarity=0.148  Sum_probs=110.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +.||+++|++|+|||||+++|.+..+...+.++.+..... ....++   .+.+|||+|          ++.|..+...+
T Consensus         1 ~~Kiv~vG~~~vGKTsli~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~iwDt~G----------~~~~~~~~~~~   69 (178)
T cd04131           1 RCKIVVVGDVQCGKTALLQVFAKDCYPETYVPTVFENYTA-SFEIDEQRIELSLWDTSG----------SPYYDNVRPLC   69 (178)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCcCCCCcCCceEEEEEE-EEEECCEEEEEEEEECCC----------chhhhhcchhh
Confidence            4689999999999999999999986666555555433321 222232   578899987          34455666778


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccc----------ccCCCchHhHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKV----------AKGRRPDENIKSFQQ  180 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~~~  180 (219)
                      ++.   +|++|+|+|++++.++... ...|..     ..+.|+++|+||+|+.+.          ..+.+..++.+++.+
T Consensus        70 ~~~---a~~~ilvfdit~~~Sf~~~-~~~w~~~i~~~~~~~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~  145 (178)
T cd04131          70 YPD---SDAVLICFDISRPETLDSV-LKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAK  145 (178)
T ss_pred             cCC---CCEEEEEEECCChhhHHHH-HHHHHHHHHHHCCCCCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHH
Confidence            777   8999999999998887542 123332     257899999999998642          123344555556655


Q ss_pred             HHHhcCCCCCCeEEeecCCCCC-hHHHHHHHHHH
Q 027757          181 LIRENYPHHPPWIMTSSVTGLG-RDELLLHMSQL  213 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~~-v~el~~~l~~~  213 (219)
                      ..+.     .+++++||++|.| ++++|..+.+.
T Consensus       146 ~~~~-----~~~~E~SA~~~~~~v~~~F~~~~~~  174 (178)
T cd04131         146 QLGA-----EIYLECSAFTSEKSVRDIFHVATMA  174 (178)
T ss_pred             HhCC-----CEEEECccCcCCcCHHHHHHHHHHH
Confidence            5431     3789999999995 99999998874

The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04136 Rap_like Rap-like subfamily

Probab=99.92  E-value=9.7e-24  Score=153.77  Aligned_cols=153  Identities=20%  Similarity=0.251  Sum_probs=104.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||++++....+...+.++.+... ......++   .+.+|||||.          +.|..++..++
T Consensus         2 ~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~   70 (163)
T cd04136           2 YKVVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQIEVDGQQCMLEILDTAGT----------EQFTAMRDLYI   70 (163)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCchhhhE-EEEEEECCEEEEEEEEECCCc----------cccchHHHHHh
Confidence            6999999999999999999998765544444433221 12222333   4678999994          34456777888


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|++++.+..... ....+.    ..+.|+++|+||+|+.+..  ....+....+.+    .++  .+
T Consensus        71 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~----~~~--~~  139 (163)
T cd04136          71 KN---GQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDER--VVSREEGQALAR----QWG--CP  139 (163)
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--eecHHHHHHHHH----HcC--Ce
Confidence            77   89999999999876654421 122222    2478999999999986532  122222333332    222  68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||+++.|++++++++.+.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~~  162 (163)
T cd04136         140 FYETSAKSKINVDEVFADLVRQI  162 (163)
T ss_pred             EEEecCCCCCCHHHHHHHHHHhc
Confidence            99999999999999999998653

The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.

>PRK04213 GTP-binding protein; Provisional

Probab=99.92  E-value=4.4e-23  Score=155.62  Aligned_cols=171  Identities=28%  Similarity=0.439  Sum_probs=117.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC-CCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA-KAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~-~~~~~~~~~~~~~~~~~  115 (219)
                      ...++|+++|.+|+|||||+|+|++..  ......++++........+ .+.+|||||+... ......++.++.....+
T Consensus         7 ~~~~~i~i~G~~~~GKSsLin~l~~~~--~~~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~   83 (201)
T PRK04213          7 DRKPEIVFVGRSNVGKSTLVRELTGKK--VRVGKRPGVTRKPNHYDWG-DFILTDLPGFGFMSGVPKEVQEKIKDEIVRY   83 (201)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCceeeCceEEeec-ceEEEeCCccccccccCHHHHHHHHHHHHHH
Confidence            346899999999999999999999974  3344566777665444433 7899999997432 22333467777777777


Q ss_pred             hh-ccCCccEEEEEEeCCCCCCc-----------ccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          116 FL-NRESLVGVLLLIDASVPPQK-----------IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       116 ~~-~~~~~d~vi~v~d~~~~~~~-----------~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      +. ....++++++|+|++.....           .+.++...+...++|+++|+||+|+.+..     .+..+++.+.++
T Consensus        84 ~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~~-----~~~~~~~~~~~~  158 (201)
T PRK04213         84 IEDNADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIKNR-----DEVLDEIAERLG  158 (201)
T ss_pred             HHhhhhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccCcH-----HHHHHHHHHHhc
Confidence            75 55667899999999753221           12344555556789999999999986532     123444444443


Q ss_pred             h--cC-CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          184 E--NY-PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       184 ~--~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .  .+ ....+++++||++| |+++++++|.+.+..
T Consensus       159 ~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~  193 (201)
T PRK04213        159 LYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE  193 (201)
T ss_pred             CCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence            2  01 00136899999999 999999999886654

>cd04144 Ras2 Ras2 subfamily

Probab=99.92  E-value=1.4e-23  Score=156.99  Aligned_cols=155  Identities=14%  Similarity=0.217  Sum_probs=107.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ||+++|.+|+|||||+++|+...+...+.++.+..... ....++   .+.+|||||.          ..|..++..+++
T Consensus         1 ki~ivG~~~vGKTsli~~l~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~~   69 (190)
T cd04144           1 KLVVLGDGGVGKTALTIQLCLNHFVETYDPTIEDSYRK-QVVVDGQPCMLEVLDTAGQ----------EEYTALRDQWIR   69 (190)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchHhhEEE-EEEECCEEEEEEEEECCCc----------hhhHHHHHHHHH
Confidence            68999999999999999999875544444444322221 222222   4788999983          445677788888


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHH-HHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLD-CANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      .   +|++|+|+|+++..++.... ....+.      ..+.|+++|+||+|+...  ..+......++.+.++      .
T Consensus        70 ~---ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~--~~v~~~~~~~~~~~~~------~  138 (190)
T cd04144          70 E---GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYE--REVSTEEGAALARRLG------C  138 (190)
T ss_pred             h---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhcccc--CccCHHHHHHHHHHhC------C
Confidence            8   89999999999877654421 122222      146899999999998653  2222333333333322      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++++||++|.|++++++++.+.+...
T Consensus       139 ~~~e~SAk~~~~v~~l~~~l~~~l~~~  165 (190)
T cd04144         139 EFIEASAKTNVNVERAFYTLVRALRQQ  165 (190)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence            799999999999999999999866543

The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>PLN03071 GTP-binding nuclear protein Ran; Provisional

Probab=99.92  E-value=1.5e-23  Score=160.01  Aligned_cols=155  Identities=14%  Similarity=0.254  Sum_probs=113.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ....+||+++|.+|+|||||+++++...+...+.++.+.+.....+..+   ..+.+|||||.          +.|..++
T Consensus        10 ~~~~~Ki~vvG~~gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~   79 (219)
T PLN03071         10 DYPSFKLVIVGDGGTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTNCGKIRFYCWDTAGQ----------EKFGGLR   79 (219)
T ss_pred             CCCceEEEEECcCCCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEECCeEEEEEEEECCCc----------hhhhhhh
Confidence            3567899999999999999999998876777777777766554333332   26889999984          3345677


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ..+++.   +|++|+|+|++++.+....  ..|+.     ..+.|+++|+||+|+....   +..+.. .+.+.      
T Consensus        80 ~~~~~~---~~~~ilvfD~~~~~s~~~i--~~w~~~i~~~~~~~piilvgNK~Dl~~~~---v~~~~~-~~~~~------  144 (219)
T PLN03071         80 DGYYIH---GQCAIIMFDVTARLTYKNV--PTWHRDLCRVCENIPIVLCGNKVDVKNRQ---VKAKQV-TFHRK------  144 (219)
T ss_pred             HHHccc---ccEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhhhhcc---CCHHHH-HHHHh------
Confidence            778777   8999999999998776543  23433     2578999999999986421   212222 22221      


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...+++++||++|.|++++|++|.+.+.
T Consensus       145 ~~~~~~e~SAk~~~~i~~~f~~l~~~~~  172 (219)
T PLN03071        145 KNLQYYEISAKSNYNFEKPFLYLARKLA  172 (219)
T ss_pred             cCCEEEEcCCCCCCCHHHHHHHHHHHHH
Confidence            2268999999999999999999987654

>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily

Probab=99.92  E-value=2.4e-23  Score=151.82  Aligned_cols=154  Identities=18%  Similarity=0.229  Sum_probs=105.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++++..+.....++.+.... .....++   .+.++||||.          ..|..+...+
T Consensus         2 ~~ki~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~   70 (164)
T cd04145           2 TYKLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYT-KQCEIDGQWAILDILDTAGQ----------EEFSAMREQY   70 (164)
T ss_pred             ceEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceEE-EEEEECCEEEEEEEEECCCC----------cchhHHHHHH
Confidence            369999999999999999999987544444444332221 1222333   5778999994          2446677778


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+.....     +.+.....+.|+++|+||+|+....  ....+...++.+.    .  ..
T Consensus        71 ~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~~--~~~~~~~~~~~~~----~--~~  139 (164)
T cd04145          71 MRT---GEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQR--KVSREEGQELARK----L--KI  139 (164)
T ss_pred             Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCccccccc--eecHHHHHHHHHH----c--CC
Confidence            877   89999999999876654321     1111223578999999999987542  1222233333332    1  25


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +++++||++|.|++++|+++.+.+
T Consensus       140 ~~~~~Sa~~~~~i~~l~~~l~~~~  163 (164)
T cd04145         140 PYIETSAKDRLNVDKAFHDLVRVI  163 (164)
T ss_pred             cEEEeeCCCCCCHHHHHHHHHHhh
Confidence            899999999999999999998764

This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali

>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily

Probab=99.92  E-value=2.1e-23  Score=159.48  Aligned_cols=159  Identities=13%  Similarity=0.071  Sum_probs=114.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|++|+|||||+++|++..+...+.++.+...... ...++   .+.+|||+|          ++.|..+...
T Consensus        12 ~~~KIvvvGd~~VGKTsLi~r~~~~~F~~~y~pTi~~~~~~~-i~~~~~~v~l~iwDTaG----------~e~~~~~~~~   80 (232)
T cd04174          12 MRCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTAG-LETEEQRVELSLWDTSG----------SPYYDNVRPL   80 (232)
T ss_pred             eeEEEEEECCCCCcHHHHHHHHhcCCCCCCcCCceeeeeEEE-EEECCEEEEEEEEeCCC----------chhhHHHHHH
Confidence            467999999999999999999998877666666655443322 22222   578888887          4566778888


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccH--HHHHHhc--cCCCcEEEEEEccccccc----------ccCCCchHhHHHHHH
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDL--DCANWLG--RNNIPLTFVFTKCDKMKV----------AKGRRPDENIKSFQQ  180 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~--~~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~~~  180 (219)
                      |++.   +|++|+|+|++++.++...  .....+.  ..+.|+++|+||+|+...          ..+.+..++.+++.+
T Consensus        81 ~~~~---ad~vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~  157 (232)
T cd04174          81 CYSD---SDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAK  157 (232)
T ss_pred             HcCC---CcEEEEEEECCChHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHH
Confidence            8888   9999999999998877542  1112222  147899999999998642          123455555666655


Q ss_pred             HHHhcCCCCCCeEEeecCCCC-ChHHHHHHHHHHHh
Q 027757          181 LIRENYPHHPPWIMTSSVTGL-GRDELLLHMSQLRN  215 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~-~v~el~~~l~~~~~  215 (219)
                      .++.     ..++++||++|. |++++|+.+.+..-
T Consensus       158 ~~~~-----~~~~EtSAktg~~~V~e~F~~~~~~~~  188 (232)
T cd04174         158 QLGA-----EVYLECSAFTSEKSIHSIFRSASLLCL  188 (232)
T ss_pred             HcCC-----CEEEEccCCcCCcCHHHHHHHHHHHHH
Confidence            5431     258999999997 89999999877643

Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04110 Rab35 Rab35 subfamily

Probab=99.92  E-value=2.7e-23  Score=156.50  Aligned_cols=155  Identities=20%  Similarity=0.237  Sum_probs=111.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|.+..+...+.++.+..........++   .+.+|||||.          +.|..++..
T Consensus         5 ~~~kivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~~~   74 (199)
T cd04110           5 HLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQ----------ERFRTITST   74 (199)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEECCEEEEEEEEeCCCc----------hhHHHHHHH
Confidence            368999999999999999999999866555556665444433333333   5789999983          335667778


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++.   +|++++|+|++++.+....  ..|+.     ....|+++|+||+|+.+..  ....++..++.+..    +  
T Consensus        75 ~~~~---a~~iilv~D~~~~~s~~~~--~~~~~~i~~~~~~~piivVgNK~Dl~~~~--~~~~~~~~~~~~~~----~--  141 (199)
T cd04110          75 YYRG---THGVIVVYDVTNGESFVNV--KRWLQEIEQNCDDVCKVLVGNKNDDPERK--VVETEDAYKFAGQM----G--  141 (199)
T ss_pred             HhCC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccccccc--ccCHHHHHHHHHHc----C--
Confidence            8877   8999999999987765443  23333     2468999999999987532  22233334443332    2  


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+++++||+++.|++++|++|.+.+-
T Consensus       142 ~~~~e~Sa~~~~gi~~lf~~l~~~~~  167 (199)
T cd04110         142 ISLFETSAKENINVEEMFNCITELVL  167 (199)
T ss_pred             CEEEEEECCCCcCHHHHHHHHHHHHH
Confidence            58999999999999999999987553

Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is

>cd04113 Rab4 Rab4 subfamily

Probab=99.92  E-value=2.7e-23  Score=151.26  Aligned_cols=153  Identities=24%  Similarity=0.228  Sum_probs=108.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||++++++..+.....+..+..........++   .+.+||+||.          ..|..+...++
T Consensus         1 ~ki~v~G~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~D~~G~----------~~~~~~~~~~~   70 (161)
T cd04113           1 FKFIIIGSSGTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQ----------ERFRSVTRSYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEECcch----------HHHHHhHHHHh
Confidence            5899999999999999999998866555555555444333333333   5789999984          34556667777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH-HH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC-AN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      +.   +|++++|+|++++.+...... +.   .+...+.|+++|+||+|+...  .....++...+....    +  .++
T Consensus        71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~----~--~~~  139 (161)
T cd04113          71 RG---AAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQ--REVTFLEASRFAQEN----G--LLF  139 (161)
T ss_pred             cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcchh--ccCCHHHHHHHHHHc----C--CEE
Confidence            76   899999999999776654321 11   122368999999999998753  223333344443332    2  689


Q ss_pred             EEeecCCCCChHHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +++||+++.|++++++++.+.
T Consensus       140 ~~~Sa~~~~~i~~~~~~~~~~  160 (161)
T cd04113         140 LETSALTGENVEEAFLKCARS  160 (161)
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            999999999999999998764

Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p

>cd01868 Rab11_like Rab11-like

Probab=99.92  E-value=4.1e-23  Score=150.91  Aligned_cols=153  Identities=23%  Similarity=0.311  Sum_probs=110.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++++..+.....++.+.+........++   .+.++|+||.          ..|..+...+
T Consensus         3 ~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~   72 (165)
T cd01868           3 LFKIVLIGDSGVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQ----------ERYRAITSAY   72 (165)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHHHHHHH
Confidence            47999999999999999999998866656666666544433333333   5789999983          3456777888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ++.   ++++|+|+|++++.+..+.  .+|+..      .++|+++|+||+|+...  +....++...+.+.    .  .
T Consensus        73 ~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pi~vv~nK~Dl~~~--~~~~~~~~~~~~~~----~--~  139 (165)
T cd01868          73 YRG---AVGALLVYDITKKQTFENV--ERWLKELRDHADSNIVIMLVGNKSDLRHL--RAVPTEEAKAFAEK----N--G  139 (165)
T ss_pred             HCC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECcccccc--ccCCHHHHHHHHHH----c--C
Confidence            777   8999999999987665443  234332      35899999999998754  22333334444332    1  2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .+++++||++|.|++++++++.+.+
T Consensus       140 ~~~~~~Sa~~~~~v~~l~~~l~~~i  164 (165)
T cd01868         140 LSFIETSALDGTNVEEAFKQLLTEI  164 (165)
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHh
Confidence            6899999999999999999987653

Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP

>PTZ00369 Ras-like protein; Provisional

Probab=99.92  E-value=2.2e-23  Score=155.74  Aligned_cols=157  Identities=15%  Similarity=0.231  Sum_probs=109.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|.+|+|||||++++.+..+...+.++.+.+... ....++   .+.+|||||.          +.|..++..
T Consensus         4 ~~~Ki~iiG~~~~GKTsLi~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~----------~~~~~l~~~   72 (189)
T PTZ00369          4 TEYKLVVVGGGGVGKSALTIQFIQNHFIDEYDPTIEDSYRK-QCVIDEETCLLDILDTAGQ----------EEYSAMRDQ   72 (189)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhcCCCCcCcCCchhhEEEE-EEEECCEEEEEEEEeCCCC----------ccchhhHHH
Confidence            35899999999999999999999876555555555443322 222222   4678999984          334667777


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++.   +|++|+|+|++++.++.... ....+    ...+.|+++|+||+|+...  ..+......++.+.+.      
T Consensus        73 ~~~~---~d~iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~~--~~i~~~~~~~~~~~~~------  141 (189)
T PTZ00369         73 YMRT---GQGFLCVYSITSRSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDSE--RQVSTGEGQELAKSFG------  141 (189)
T ss_pred             Hhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc--cccCHHHHHHHHHHhC------
Confidence            8877   89999999999877654432 11112    2347899999999998643  2222333334433322      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+++++||+++.|++++|+++.+.+..
T Consensus       142 ~~~~e~Sak~~~gi~~~~~~l~~~l~~  168 (189)
T PTZ00369        142 IPFLETSAKQRVNVDEAFYELVREIRK  168 (189)
T ss_pred             CEEEEeeCCCCCCHHHHHHHHHHHHHH
Confidence            579999999999999999999875543

>cd04142 RRP22 RRP22 subfamily

Probab=99.92  E-value=3.6e-23  Score=155.45  Aligned_cols=164  Identities=13%  Similarity=0.116  Sum_probs=106.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+|+|.+|+|||||+++|++..+...+.++.+..........++   .+.+|||||..... ...+++ |......++
T Consensus         1 ~kI~ivG~~~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~~~~~~l~i~Dt~G~~~~~-~~~~~e-~~~~~~~~~   78 (198)
T cd04142           1 VRVAVLGAPGVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYP-GTAGQE-WMDPRFRGL   78 (198)
T ss_pred             CEEEEECCCCCcHHHHHHHHHcCCCCcccCCccccccceeEEEECCEEEEEEEEeCCCcccCC-ccchhH-HHHHHHhhh
Confidence            5899999999999999999998765554444443222222223333   57799999964321 122222 333333344


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +.   +|++|+|+|++++.+..... ....+.      ..++|+++|+||+|+...  +.+..+....+...   .+  .
T Consensus        79 ~~---ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~--~~~~~~~~~~~~~~---~~--~  148 (198)
T cd04142          79 RN---SRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH--RFAPRHVLSVLVRK---SW--K  148 (198)
T ss_pred             cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc--ccccHHHHHHHHHH---hc--C
Confidence            44   89999999999887765432 122221      356899999999999653  22223333332221   11  2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++++||++|.|++++|+.+.+..-
T Consensus       149 ~~~~e~Sak~g~~v~~lf~~i~~~~~  174 (198)
T cd04142         149 CGYLECSAKYNWHILLLFKELLISAT  174 (198)
T ss_pred             CcEEEecCCCCCCHHHHHHHHHHHhh
Confidence            68999999999999999999886543

RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.

>KOG0098 consensus GTPase Rab2, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=1e-23  Score=150.16  Aligned_cols=156  Identities=20%  Similarity=0.248  Sum_probs=130.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+|++++|+.|+|||+|+-+|+.+.|.+.++.+.|.......+.+++   ++.+|||.|          ++.|.++..
T Consensus         4 ~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaG----------qe~frsv~~   73 (216)
T KOG0098|consen    4 AYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAG----------QESFRSVTR   73 (216)
T ss_pred             cceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCC----------cHHHHHHHH
Confidence            4568999999999999999999999999999998888777666666655   567777766          778899999


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .||+.   +-++|+|+|+++..++..+  -.|+..      .+.-+++++||+|+...  +++.+++-+.|.++-+    
T Consensus        74 syYr~---a~GalLVydit~r~sF~hL--~~wL~D~rq~~~~NmvImLiGNKsDL~~r--R~Vs~EEGeaFA~ehg----  142 (216)
T KOG0098|consen   74 SYYRG---AAGALLVYDITRRESFNHL--TSWLEDARQHSNENMVIMLIGNKSDLEAR--REVSKEEGEAFAREHG----  142 (216)
T ss_pred             HHhcc---CcceEEEEEccchhhHHHH--HHHHHHHHHhcCCCcEEEEEcchhhhhcc--ccccHHHHHHHHHHcC----
Confidence            99999   8889999999999888665  345542      67889999999999876  5788888999888733    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                        ..++++||+++.|++|.|..+....-
T Consensus       143 --LifmETSakt~~~VEEaF~nta~~Iy  168 (216)
T KOG0098|consen  143 --LIFMETSAKTAENVEEAFINTAKEIY  168 (216)
T ss_pred             --ceeehhhhhhhhhHHHHHHHHHHHHH
Confidence              57889999999999999988766543

>cd04109 Rab28 Rab28 subfamily

Probab=99.91  E-value=3.5e-23  Score=157.74  Aligned_cols=155  Identities=16%  Similarity=0.131  Sum_probs=110.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +||+++|++|+|||||+++|++..+...+.++.+..........+    ..+.+|||||          +..+..+...+
T Consensus         1 ~Ki~ivG~~~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~~~~~~~~i~Dt~G----------~~~~~~l~~~~   70 (215)
T cd04109           1 FKIVVLGDGAVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGG----------QSIGGKMLDKY   70 (215)
T ss_pred             CEEEEECcCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCC----------cHHHHHHHHHH
Confidence            489999999999999999999886655555555544333333332    2678999998          34456777888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ++.   +|++|+|+|++++.++.... ....+..      .+.|+++|+||+|+...  +.+..+....+.+..+     
T Consensus        71 ~~~---ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~--~~v~~~~~~~~~~~~~-----  140 (215)
T cd04109          71 IYG---AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHN--RTVKDDKHARFAQANG-----  140 (215)
T ss_pred             hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-----
Confidence            877   99999999999987765432 1122221      34689999999999643  2333344444444322     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       .+++++||++|.|++++|+++.+.+.
T Consensus       141 -~~~~~iSAktg~gv~~lf~~l~~~l~  166 (215)
T cd04109         141 -MESCLVSAKTGDRVNLLFQQLAAELL  166 (215)
T ss_pred             -CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence             57899999999999999999988654

First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs

>cd04124 RabL2 RabL2 subfamily

Probab=99.91  E-value=3.2e-23  Score=151.04  Aligned_cols=154  Identities=18%  Similarity=0.173  Sum_probs=106.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||++++++..+.....++.+.+........+.   .+.+|||||.          +.|..++..++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~   70 (161)
T cd04124           1 VKIILLGDSAVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQ----------ERFQTMHASYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCc----------hhhhhhhHHHh
Confidence            5899999999999999999998766555444444333222222222   5779999983          34567778888


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI  193 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (219)
                      +.   +|++|+|+|++++.+..+.. .+..+..  .+.|+++|+||+|+....     ......+.+    ..  ..+++
T Consensus        71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~~~~-----~~~~~~~~~----~~--~~~~~  136 (161)
T cd04124          71 HK---AHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSV-----TQKKFNFAE----KH--NLPLY  136 (161)
T ss_pred             CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCcEEEEEECccCchhH-----HHHHHHHHH----Hc--CCeEE
Confidence            87   89999999999876654432 2222222  478999999999985320     111112211    12  26899


Q ss_pred             EeecCCCCChHHHHHHHHHHHhhh
Q 027757          194 MTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++||++|.|++++++.+.+..-++
T Consensus       137 ~~Sa~~~~gv~~l~~~l~~~~~~~  160 (161)
T cd04124         137 YVSAADGTNVVKLFQDAIKLAVSY  160 (161)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHhc
Confidence            999999999999999998866543

RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b

>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily

Probab=99.91  E-value=6.7e-23  Score=150.07  Aligned_cols=157  Identities=20%  Similarity=0.231  Sum_probs=109.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      |.|+++|.+|+|||||+|+|++..+...  ...+++....  ....    +..+.++||||..          .|..++.
T Consensus         1 ~~i~iiG~~~~GKtsli~~l~~~~~~~~--~~~~~t~~~~~~~~~~~~~~~~~~~iiDtpG~~----------~~~~~~~   68 (168)
T cd01887           1 PVVTVMGHVDHGKTTLLDKIRKTNVAAG--EAGGITQHIGAFEVPAEVLKIPGITFIDTPGHE----------AFTNMRA   68 (168)
T ss_pred             CEEEEEecCCCCHHHHHHHHHhcccccc--cCCCeEEeeccEEEecccCCcceEEEEeCCCcH----------HHHHHHH
Confidence            4699999999999999999998753332  2233444332  2222    3478999999952          2445555


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh----cCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE----NYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  189 (219)
                      .++..   +|++++|+|++++........+.++...++|+++|+||+|+....     .....+....+..    .+...
T Consensus        69 ~~~~~---~d~il~v~d~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~  140 (168)
T cd01887          69 RGASL---TDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNAN-----PERVKNELSELGLQGEDEWGGD  140 (168)
T ss_pred             HHHhh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEEceeccccc-----HHHHHHHHHHhhccccccccCc
Confidence            55555   899999999998765555566667777889999999999987431     1122222222211    12334


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++|++++.|++++++++.+..+.
T Consensus       141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (168)
T cd01887         141 VQIVPTSAKTGEGIDDLLEAILLLAEK  167 (168)
T ss_pred             CcEEEeecccCCCHHHHHHHHHHhhhc
Confidence            789999999999999999999988764

IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.

>cd01866 Rab2 Rab2 subfamily

Probab=99.91  E-value=6.6e-23  Score=150.38  Aligned_cols=155  Identities=21%  Similarity=0.273  Sum_probs=113.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|.+|+|||||++++++..+.....++.+.+........+.   .+.+|||||.          +.+..+...
T Consensus         3 ~~~ki~vvG~~~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~   72 (168)
T cd01866           3 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQ----------ESFRSITRS   72 (168)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHH
Confidence            357999999999999999999999866565566666554433333333   6889999993          345666777


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +++.   +|++++|+|++++.+..+.  ..|+.      ..+.|+++|+||+|+....  ....++...+....      
T Consensus        73 ~~~~---~d~il~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~pvivv~nK~Dl~~~~--~~~~~~~~~~~~~~------  139 (168)
T cd01866          73 YYRG---AAGALLVYDITRRETFNHL--TSWLEDARQHSNSNMTIMLIGNKCDLESRR--EVSYEEGEAFAKEH------  139 (168)
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECccccccc--CCCHHHHHHHHHHc------
Confidence            7776   8999999999987666443  34443      2478999999999987532  23334444443332      


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..+++++||+++.|++++|.++.+.+.
T Consensus       140 ~~~~~e~Sa~~~~~i~~~~~~~~~~~~  166 (168)
T cd01866         140 GLIFMETSAKTASNVEEAFINTAKEIY  166 (168)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            257999999999999999999988764

Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur

>cd04128 Spg1 Spg1p

Probab=99.91  E-value=3.4e-23  Score=153.71  Aligned_cols=157  Identities=17%  Similarity=0.228  Sum_probs=107.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|..|+|||||+++|++..+...+.++.+..........++   .+.+|||+|.          +.|..++..++
T Consensus         1 ~Ki~vlG~~~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~~~~~~l~iwDt~G~----------~~~~~~~~~~~   70 (182)
T cd04128           1 LKIGLLGDAQIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQ----------REFINMLPLVC   70 (182)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc----------hhHHHhhHHHC
Confidence            5899999999999999999998877666777766554433333433   5788899873          44566777888


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +.   +|++++|+|++++.+..+.  ..|+.      ....| ++|+||+|+........ .....+..+.+....+  .
T Consensus        71 ~~---a~~iilv~D~t~~~s~~~i--~~~~~~~~~~~~~~~p-ilVgnK~Dl~~~~~~~~-~~~~~~~~~~~a~~~~--~  141 (182)
T cd04128          71 ND---AVAILFMFDLTRKSTLNSI--KEWYRQARGFNKTAIP-ILVGTKYDLFADLPPEE-QEEITKQARKYAKAMK--A  141 (182)
T ss_pred             cC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCE-EEEEEchhccccccchh-hhhhHHHHHHHHHHcC--C
Confidence            77   8999999999998776553  22322      23456 68899999863211000 0111122222322223  5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||++|.|++++|+++.+.+-
T Consensus       142 ~~~e~SAk~g~~v~~lf~~l~~~l~  166 (182)
T cd04128         142 PLIFCSTSHSINVQKIFKIVLAKAF  166 (182)
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987654

Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are

>PRK12297 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=9.1e-23  Score=167.73  Aligned_cols=192  Identities=24%  Similarity=0.323  Sum_probs=137.4

Q ss_pred             CCCccccccccccccccceeeeeccCCCCCCCCCCCC--------------eEEEEcCCCCCHHHHHHHHhcCccccccc
Q 027757            4 PGSNIVVGPYAGHSQIKEVEFVKSSGRAKDCPKDDRP--------------EFAILGRSNVGKSSLINALVRKKELALTS   69 (219)
Q Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~v~i~G~~g~GKSslin~l~~~~~~~~~~   69 (219)
                      ++..+ +..+++.....|+.|..+..+.++++..+.+              .|+++|.+|||||||+|+|++..  +.+.
T Consensus       110 ~~~~~-~va~GG~gG~gn~~F~~s~~~~p~~~~~G~~ge~~~~~lelk~~adVglVG~pNaGKSTLLn~Lt~ak--~kIa  186 (424)
T PRK12297        110 PGQEV-VVAKGGRGGRGNAHFATSTNQAPRIAENGEPGEERELRLELKLLADVGLVGFPNVGKSTLLSVVSNAK--PKIA  186 (424)
T ss_pred             CCcEE-EEECCCCCCcCchhhcCCCCCCCCcCCCCCCCeEeEEEEeecccCcEEEEcCCCCCHHHHHHHHHcCC--Cccc
Confidence            44433 3447788888999999999998888887777              99999999999999999999863  5566


Q ss_pred             CCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC---CcccH-H
Q 027757           70 KKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP---QKIDL-D  141 (219)
Q Consensus        70 ~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~---~~~~~-~  141 (219)
                      +.+.+|..+.....    +..++++|+||+.....      ....+...|++..+.++++|+|+|+++..   ...+. .
T Consensus       187 ~ypfTTl~PnlG~v~~~~~~~~~laD~PGliega~------~~~gLg~~fLrhier~~llI~VID~s~~~~~dp~e~~~~  260 (424)
T PRK12297        187 NYHFTTLVPNLGVVETDDGRSFVMADIPGLIEGAS------EGVGLGHQFLRHIERTRVIVHVIDMSGSEGRDPIEDYEK  260 (424)
T ss_pred             cCCcceeceEEEEEEEeCCceEEEEECCCCccccc------ccchHHHHHHHHHhhCCEEEEEEeCCccccCChHHHHHH
Confidence            77788877654433    45799999999853211      11234455666666689999999998642   22221 2


Q ss_pred             HHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          142 CANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       142 ~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +..++..     .++|.++|+||+|+...      .+.++++.+.+.      .+++++||+++.|+++++++|.+.+..
T Consensus       261 i~~EL~~y~~~L~~kP~IVV~NK~DL~~~------~e~l~~l~~~l~------~~i~~iSA~tgeGI~eL~~~L~~~l~~  328 (424)
T PRK12297        261 INKELKLYNPRLLERPQIVVANKMDLPEA------EENLEEFKEKLG------PKVFPISALTGQGLDELLYAVAELLEE  328 (424)
T ss_pred             HHHHHhhhchhccCCcEEEEEeCCCCcCC------HHHHHHHHHHhC------CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence            2233332     47899999999997432      233444444332      579999999999999999999887654

>cd04112 Rab26 Rab26 subfamily

Probab=99.91  E-value=5.7e-23  Score=153.78  Aligned_cols=156  Identities=19%  Similarity=0.178  Sum_probs=107.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +||+++|++|+|||||+++|.+..+.. .+.++.+.+........++   .+.+|||||.          ..+......+
T Consensus         1 ~Ki~vvG~~~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~   70 (191)
T cd04112           1 FKVMLLGDSGVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQ----------ERFRSVTHAY   70 (191)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEECCEEEEEEEEeCCCc----------HHHHHhhHHH
Confidence            489999999999999999999875432 3334433333222233333   6889999993          4456666777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|+++..+..... ....+   ...++|+++|+||+|+...  +.+..++.+.+.+.+.      .+
T Consensus        71 ~~~---ad~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~~--~~~~~~~~~~l~~~~~------~~  139 (191)
T cd04112          71 YRD---AHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGE--RVVKREDGERLAKEYG------VP  139 (191)
T ss_pred             ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchhc--cccCHHHHHHHHHHcC------Ce
Confidence            776   89999999999876654321 11111   1247899999999998653  2233334444443322      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++||++|.|++++++++.+.+..
T Consensus       140 ~~e~Sa~~~~~v~~l~~~l~~~~~~  164 (191)
T cd04112         140 FMETSAKTGLNVELAFTAVAKELKH  164 (191)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999886644

First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd01871 Rac1_like Rac1-like subfamily

Probab=99.91  E-value=2.1e-23  Score=153.80  Aligned_cols=155  Identities=14%  Similarity=0.076  Sum_probs=107.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+.+++...+...+.++.+...... ...++   .+.+|||||.          ..|..++..++
T Consensus         2 ~ki~iiG~~~vGKSsli~~~~~~~f~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~~   70 (174)
T cd01871           2 IKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQ----------EDYDRLRPLSY   70 (174)
T ss_pred             eEEEEECCCCCCHHHHHHHHhcCCCCCcCCCcceeeeEEE-EEECCEEEEEEEEECCCc----------hhhhhhhhhhc
Confidence            6899999999999999999998766666555554322222 22232   5789999983          34456667777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLI  182 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~  182 (219)
                      +.   +|++|+|+|++++.++....  ....+.  ..+.|+++|+||+|+.+...          +.+..++..++.+.+
T Consensus        71 ~~---~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  147 (174)
T cd01871          71 PQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEI  147 (174)
T ss_pred             CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence            76   89999999999987765532  122222  24689999999999864311          123334444444433


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +     .++++++||++|.|++++|+.+.+.
T Consensus       148 ~-----~~~~~e~Sa~~~~~i~~~f~~l~~~  173 (174)
T cd01871         148 G-----AVKYLECSALTQKGLKTVFDEAIRA  173 (174)
T ss_pred             C-----CcEEEEecccccCCHHHHHHHHHHh
Confidence            2     1489999999999999999988763

The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti

>cd04125 RabA_like RabA-like subfamily

Probab=99.91  E-value=6.8e-23  Score=153.03  Aligned_cols=154  Identities=23%  Similarity=0.296  Sum_probs=110.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|.+..+...+.++.+.+........++   .+.+|||||.          ..|..++..++
T Consensus         1 ~ki~v~G~~~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~g~----------~~~~~~~~~~~   70 (188)
T cd04125           1 FKVVIIGDYGVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQ----------ERFRSLNNSYY   70 (188)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHhhHHHHc
Confidence            5899999999999999999999866555666666555444444433   4678999983          34456677777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +.   +|++|+|+|++++.+....  ..|+.      ..+.|+++|+||+|+....  .+..+....+.+..      ..
T Consensus        71 ~~---~d~iilv~d~~~~~s~~~i--~~~~~~i~~~~~~~~~~ivv~nK~Dl~~~~--~v~~~~~~~~~~~~------~~  137 (188)
T cd04125          71 RG---AHGYLLVYDVTDQESFENL--KFWINEINRYARENVIKVIVANKSDLVNNK--VVDSNIAKSFCDSL------NI  137 (188)
T ss_pred             cC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEECCCCcccc--cCCHHHHHHHHHHc------CC
Confidence            77   8999999999987765443  22332      2468999999999987532  22233333333322      25


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+++.|++++|+++.+.+..
T Consensus       138 ~~~evSa~~~~~i~~~f~~l~~~~~~  163 (188)
T cd04125         138 PFFETSAKQSINVEEAFILLVKLIIK  163 (188)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999886644

RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>cd04116 Rab9 Rab9 subfamily

Probab=99.91  E-value=5.4e-23  Score=151.01  Aligned_cols=154  Identities=19%  Similarity=0.210  Sum_probs=109.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      +..+||+++|++|+|||||+++|++..+.....+..+..........++   .+.+|||||          ++.+..++.
T Consensus         3 ~~~~ki~vvG~~~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~G----------~~~~~~~~~   72 (170)
T cd04116           3 SSLLKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAG----------QERFRSLRT   72 (170)
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEECCeEEEEEEEeCCC----------hHHHHHhHH
Confidence            3468999999999999999999998766555555555443333333333   567899998          345677788


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      .+++.   +|++++|+|++++.+.....  .|..          ..+.|+++|+||+|+..   +....++..++.+..+
T Consensus        73 ~~~~~---~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~  144 (170)
T cd04116          73 PFYRG---SDCCLLTFAVDDSQSFQNLS--NWKKEFIYYADVKEPESFPFVVLGNKNDIPE---RQVSTEEAQAWCRENG  144 (170)
T ss_pred             HHhcC---CCEEEEEEECCCHHHHHhHH--HHHHHHHHhcccccCCCCcEEEEEECccccc---cccCHHHHHHHHHHCC
Confidence            88877   89999999999876655432  2221          24689999999999863   2233344444444322


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                           ..+++++||+++.|++++|+++.+.
T Consensus       145 -----~~~~~e~Sa~~~~~v~~~~~~~~~~  169 (170)
T cd04116         145 -----DYPYFETSAKDATNVAAAFEEAVRR  169 (170)
T ss_pred             -----CCeEEEEECCCCCCHHHHHHHHHhh
Confidence                 1478999999999999999998764

Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX

>PLN03110 Rab GTPase; Provisional

Probab=99.91  E-value=1.1e-22  Score=155.01  Aligned_cols=156  Identities=18%  Similarity=0.230  Sum_probs=114.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|++|+|||||+++|.+..+.....++.+..........++   .+.+|||||          ++.|..+...
T Consensus        11 ~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G----------~~~~~~~~~~   80 (216)
T PLN03110         11 YLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAG----------QERYRAITSA   80 (216)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC----------cHHHHHHHHH
Confidence            468999999999999999999999866555556666554444444443   678899988          4456778888


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +++.   ++++|+|+|++++.++...  ..|+.      ..+.|+++|+||+|+...  +.+..+....+...    .  
T Consensus        81 ~~~~---~~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~l~~~----~--  147 (216)
T PLN03110         81 YYRG---AVGALLVYDITKRQTFDNV--QRWLRELRDHADSNIVIMMAGNKSDLNHL--RSVAEEDGQALAEK----E--  147 (216)
T ss_pred             HhCC---CCEEEEEEECCChHHHHHH--HHHHHHHHHhCCCCCeEEEEEEChhcccc--cCCCHHHHHHHHHH----c--
Confidence            8887   8999999999987776443  23332      257999999999998643  22333333333322    2  


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .++++++||+++.|++++|+++.+.+..
T Consensus       148 ~~~~~e~SA~~g~~v~~lf~~l~~~i~~  175 (216)
T PLN03110        148 GLSFLETSALEATNVEKAFQTILLEIYH  175 (216)
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            2689999999999999999999876543

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.91  E-value=2.7e-23  Score=167.76  Aligned_cols=158  Identities=24%  Similarity=0.294  Sum_probs=124.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE---EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +.|+|+|.||+|||||+|+|+++ ..+.+...+|+|++..+   .+.+.++.++||+|+.....+.-    ...+....+
T Consensus         4 ~~VAIVGRPNVGKSTLFNRL~g~-r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l----~~~i~~Qa~   78 (444)
T COG1160           4 PVVAIVGRPNVGKSTLFNRLTGR-RIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDEL----QELIREQAL   78 (444)
T ss_pred             CEEEEECCCCCcHHHHHHHHhCC-eeeEeecCCCCccCCccceeEEcCceEEEEECCCCCcCCchHH----HHHHHHHHH
Confidence            78999999999999999999998 69999999999998643   34566899999999864332211    134455555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      ...+.||++|||+|...+.+..+..+.+++...++|+++|+||+|-...          +....++-+.+.  -.++.+|
T Consensus        79 ~Ai~eADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~----------e~~~~efyslG~--g~~~~IS  146 (444)
T COG1160          79 IAIEEADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKA----------EELAYEFYSLGF--GEPVPIS  146 (444)
T ss_pred             HHHHhCCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchh----------hhhHHHHHhcCC--CCceEee
Confidence            5566699999999999999999999999999888999999999996532          111222222111  3679999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~  214 (219)
                      |..|.|+.+|++.+.+.+
T Consensus       147 A~Hg~Gi~dLld~v~~~l  164 (444)
T COG1160         147 AEHGRGIGDLLDAVLELL  164 (444)
T ss_pred             hhhccCHHHHHHHHHhhc
Confidence            999999999999998875

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.91  E-value=2e-23  Score=175.78  Aligned_cols=169  Identities=22%  Similarity=0.271  Sum_probs=121.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHH-
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK-  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~-  113 (219)
                      ..++|+++|.+|+|||||+|+|++.. ....++.+++|.+...  +. .+..+.+|||||+........+.+.|..+.. 
T Consensus       210 ~~~kI~iiG~~nvGKSSLin~l~~~~-~~~~s~~~gtT~d~~~~~~~~~~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~  288 (472)
T PRK03003        210 GPRRVALVGKPNVGKSSLLNKLAGEE-RSVVDDVAGTTVDPVDSLIELGGKTWRFVDTAGLRRRVKQASGHEYYASLRTH  288 (472)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCCC-cccccCCCCccCCcceEEEEECCEEEEEEECCCccccccccchHHHHHHHHHH
Confidence            46899999999999999999999973 4556777777765422  22 2346889999997543333334455544432 


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHPP  191 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  191 (219)
                      .+++.   +|++|+|+|++++.+..+...+..+...++|+++|+||+|+....       ......+.+...+  ....+
T Consensus       289 ~~i~~---ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~~~-------~~~~~~~~i~~~l~~~~~~~  358 (472)
T PRK03003        289 AAIEA---AEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVDED-------RRYYLEREIDRELAQVPWAP  358 (472)
T ss_pred             HHHhc---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChh-------HHHHHHHHHHHhcccCCCCC
Confidence            34455   899999999999988888777777777899999999999997531       1111122222111  12368


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++||++|.|++++++.+.+.+..+
T Consensus       359 ~~~~SAk~g~gv~~lf~~i~~~~~~~  384 (472)
T PRK03003        359 RVNISAKTGRAVDKLVPALETALESW  384 (472)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999887654

>cd04111 Rab39 Rab39 subfamily

Probab=99.91  E-value=9.4e-23  Score=154.77  Aligned_cols=154  Identities=23%  Similarity=0.299  Sum_probs=109.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-c---CeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-N---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .+||+++|++|+|||||+++|++..+.....++.+.......+.. +   ..+.+|||||.          +.|..+...
T Consensus         2 ~~KIvvvG~~~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~   71 (211)
T cd04111           2 QFRLIVIGDSTVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQ----------ERFRSITRS   71 (211)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEECCCCEEEEEEEeCCcc----------hhHHHHHHH
Confidence            479999999999999999999987654444444443333222222 1   25788999983          445677778


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      +++.   +|++|+|+|++++.+..+.  ..|+.       ....|+++|+||+|+...  ..+..+....+.+.++    
T Consensus        72 ~~~~---~d~iilv~D~~~~~Sf~~l--~~~~~~i~~~~~~~~~~iilvgNK~Dl~~~--~~v~~~~~~~~~~~~~----  140 (211)
T cd04111          72 YYRN---SVGVLLVFDITNRESFEHV--HDWLEEARSHIQPHRPVFILVGHKCDLESQ--RQVTREEAEKLAKDLG----  140 (211)
T ss_pred             HhcC---CcEEEEEEECCCHHHHHHH--HHHHHHHHHhcCCCCCeEEEEEEccccccc--cccCHHHHHHHHHHhC----
Confidence            8877   8999999999997766543  23332       245788999999998763  2333344444444322    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                        .+++++||+++.|+++++++|.+...
T Consensus       141 --~~~~e~Sak~g~~v~e~f~~l~~~~~  166 (211)
T cd04111         141 --MKYIETSARTGDNVEEAFELLTQEIY  166 (211)
T ss_pred             --CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence              68999999999999999999987554

Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.

>smart00175 RAB Rab subfamily of small GTPases

Probab=99.91  E-value=1.3e-22  Score=147.96  Aligned_cols=153  Identities=24%  Similarity=0.284  Sum_probs=108.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|++..+.....++.+..........+.   .+.++|+||.          ..+......++
T Consensus         1 ~kv~v~G~~~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~----------~~~~~~~~~~~   70 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQ----------ERFRSITSSYY   70 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCh----------HHHHHHHHHHh
Confidence            5899999999999999999998755444444444433333333333   5779999983          34556677777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +.   +|++|+|+|++++.+....  ..|+..      .++|+++|+||+|+....  ....+..+++.+.    .+  .
T Consensus        71 ~~---~d~~ilv~d~~~~~s~~~~--~~~l~~~~~~~~~~~pivvv~nK~D~~~~~--~~~~~~~~~~~~~----~~--~  137 (164)
T smart00175       71 RG---AVGALLVYDITNRESFENL--KNWLKELREYADPNVVIMLVGNKSDLEDQR--QVSREEAEAFAEE----HG--L  137 (164)
T ss_pred             CC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCeEEEEEEchhccccc--CCCHHHHHHHHHH----cC--C
Confidence            76   8999999999987766443  233332      579999999999987532  2223344444332    22  5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++|++++.|++++++++.+.+.
T Consensus       138 ~~~e~Sa~~~~~i~~l~~~i~~~~~  162 (164)
T smart00175      138 PFFETSAKTNTNVEEAFEELAREIL  162 (164)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            7999999999999999999988654

Rab GTPases are implicated in vesicle trafficking.

>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.91  E-value=5.5e-23  Score=150.54  Aligned_cols=151  Identities=14%  Similarity=0.237  Sum_probs=104.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++++...+...+.++.+.......+..+   ..+.+|||||..          .+..+...++
T Consensus         1 ~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~~   70 (166)
T cd00877           1 FKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQE----------KFGGLRDGYY   70 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCCh----------hhccccHHHh
Confidence            489999999999999999999775555566665544432222222   268899999953          2234455666


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++|+|+|++++.+....  ..|+..     .+.|+++|+||+|+....   ... ...++.+    .  ..++
T Consensus        71 ~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~piiiv~nK~Dl~~~~---~~~-~~~~~~~----~--~~~~  135 (166)
T cd00877          71 IG---GQCAIIMFDVTSRVTYKNV--PNWHRDLVRVCGNIPIVLCGNKVDIKDRK---VKA-KQITFHR----K--KNLQ  135 (166)
T ss_pred             cC---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCcEEEEEEchhccccc---CCH-HHHHHHH----H--cCCE
Confidence            66   8999999999987776543  223332     379999999999987321   111 1112211    1  2368


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||++|.|++++|++|.+.+.
T Consensus       136 ~~e~Sa~~~~~v~~~f~~l~~~~~  159 (166)
T cd00877         136 YYEISAKSNYNFEKPFLWLARKLL  159 (166)
T ss_pred             EEEEeCCCCCChHHHHHHHHHHHH
Confidence            999999999999999999987654

Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is

>cd01862 Rab7 Rab7 subfamily

Probab=99.91  E-value=1.2e-22  Score=149.20  Aligned_cols=157  Identities=21%  Similarity=0.233  Sum_probs=107.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||++++.+..+.....++.+.+........++   .+.+||+||.          ..+..++..++
T Consensus         1 ~ki~viG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~   70 (172)
T cd01862           1 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQ----------ERFQSLGVAFY   70 (172)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEECCEEEEEEEEeCCCh----------HHHHhHHHHHh
Confidence            4899999999999999999999865555555555443333333333   4678999984          33456677777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH-----HHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC-----ANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-----~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +.   +|++|+++|+.++.+......     .....   ..++|+++|+||+|+..+  .....+..+.+.+..+     
T Consensus        71 ~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-----  140 (172)
T cd01862          71 RG---ADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEK--RQVSTKKAQQWCQSNG-----  140 (172)
T ss_pred             cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccc--cccCHHHHHHHHHHcC-----
Confidence            77   899999999998765433211     11111   137899999999999752  1122333334333222     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ..+++++|+++|.|++++++++.+.+..
T Consensus       141 ~~~~~~~Sa~~~~gv~~l~~~i~~~~~~  168 (172)
T cd01862         141 NIPYFETSAKEAINVEQAFETIARKALE  168 (172)
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            2689999999999999999999886544

Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-

>cd04149 Arf6 Arf6 subfamily

Probab=99.91  E-value=7.9e-23  Score=149.95  Aligned_cols=156  Identities=15%  Similarity=0.132  Sum_probs=103.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...++|+++|.+|+|||||+++|....+ ..+.++.+.+..... ..+..+.+|||||.          +.+..++..++
T Consensus         7 ~~~~kv~i~G~~~~GKTsli~~l~~~~~-~~~~~t~g~~~~~~~-~~~~~~~l~Dt~G~----------~~~~~~~~~~~   74 (168)
T cd04149           7 NKEMRILMLGLDAAGKTTILYKLKLGQS-VTTIPTVGFNVETVT-YKNVKFNVWDVGGQ----------DKIRPLWRHYY   74 (168)
T ss_pred             CCccEEEEECcCCCCHHHHHHHHccCCC-ccccCCcccceEEEE-ECCEEEEEEECCCC----------HHHHHHHHHHh
Confidence            3468999999999999999999987643 333444443332111 12346899999984          34566777888


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++|+|+|++++.+....  .+.+.+..   .+.|+++|+||+|+...    ...+++++..+. ........+
T Consensus        75 ~~---a~~ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~i~~~~~~-~~~~~~~~~  146 (168)
T cd04149          75 TG---TQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDA----MKPHEIQEKLGL-TRIRDRNWY  146 (168)
T ss_pred             cc---CCEEEEEEeCCchhhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCccC----CCHHHHHHHcCC-CccCCCcEE
Confidence            87   8999999999987655432  11122222   46899999999998642    112233332211 111112246


Q ss_pred             eEEeecCCCCChHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      ++++||++|.|++++|+||.+
T Consensus       147 ~~~~SAk~g~gv~~~~~~l~~  167 (168)
T cd04149         147 VQPSCATSGDGLYEGLTWLSS  167 (168)
T ss_pred             EEEeeCCCCCChHHHHHHHhc
Confidence            899999999999999999864

Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t

>cd04134 Rho3 Rho3 subfamily

Probab=99.91  E-value=2e-23  Score=155.96  Aligned_cols=157  Identities=14%  Similarity=0.175  Sum_probs=105.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .||+++|++|+|||||+++|.+..+...+.++.+..... ....+   ..+.+|||+|.          +.|..++..++
T Consensus         1 ~kivivG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~-~i~~~~~~~~l~i~Dt~G~----------~~~~~l~~~~~   69 (189)
T cd04134           1 RKVVVLGDGACGKTSLLNVFTRGYFPQVYEPTVFENYVH-DIFVDGLHIELSLWDTAGQ----------EEFDRLRSLSY   69 (189)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCCccCCcceeeeEE-EEEECCEEEEEEEEECCCC----------hhccccccccc
Confidence            389999999999999999999986655555554433221 12222   25789999984          23345556666


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccccC----------CCchHhHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAKG----------RRPDENIKSFQQLI  182 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~~----------~~~~~~~~~~~~~~  182 (219)
                      +.   +|++|+|+|++++.++....  .+..+..  .+.|+++|+||+|+......          .+..++..++.+  
T Consensus        70 ~~---a~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~--  144 (189)
T cd04134          70 AD---TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAK--  144 (189)
T ss_pred             cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHH--
Confidence            66   89999999999987765432  1222222  47899999999998754211          111111222221  


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                        ..+ .++++++||++|.|++++|+++.+.+.
T Consensus       145 --~~~-~~~~~e~SAk~~~~v~e~f~~l~~~~~  174 (189)
T cd04134         145 --RIN-ALRYLECSAKLNRGVNEAFTEAARVAL  174 (189)
T ss_pred             --HcC-CCEEEEccCCcCCCHHHHHHHHHHHHh
Confidence              111 257999999999999999999988664

Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>KOG2486 consensus Predicted GTPase [General function prediction only]

Probab=99.91  E-value=1.9e-23  Score=157.93  Aligned_cols=218  Identities=60%  Similarity=0.913  Sum_probs=183.6

Q ss_pred             CCCCCCccccccccccccccceeeeec--cCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC-CCCeeEE
Q 027757            1 MILPGSNIVVGPYAGHSQIKEVEFVKS--SGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK-KPGKTQL   77 (219)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~   77 (219)
                      |+.+++||..+++..+.++.+..++..  .....+++...+++++++|.+|+|||||+|.++.....+.... ..+-|+.
T Consensus        96 ~v~~~snI~~sPf~~r~qv~~~~~V~~~~s~~~~D~Pk~~~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq~  175 (320)
T KOG2486|consen   96 RVLSGSNIDVSPFLARKQVKSEKRVHGDGSVTAEDCPKDKRPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQA  175 (320)
T ss_pred             HhccCCCcccCcccCchhhccceeeeccccceeccCCCCCCceeeeecCCcccHHHHHhhhhhhhhhhhhcCCCCcccee
Confidence            578999999999999999999999988  5666788889999999999999999999999999887777666 8899999


Q ss_pred             eeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEE
Q 027757           78 INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF  157 (219)
Q Consensus        78 ~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~  157 (219)
                      ++++.++..++.+|.||++...+.......|.++.+.|+..++..--+.+++|++.+....+...+.|+.+.++|+.+|+
T Consensus       176 in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vf  255 (320)
T KOG2486|consen  176 INHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVF  255 (320)
T ss_pred             eeeeeccceEEEEecCCcccccCCccCcchHhHhHHHHHHhhhhhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEee
Confidence            99999999999999999888888788888999999999999888878899999999999999999999999999999999


Q ss_pred             Eccccccccc--CCCchHhHHH-HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          158 TKCDKMKVAK--GRRPDENIKS-FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       158 nK~D~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                      ||||......  .......+.. +.......+....|++.+|+.++.|+++|+-++......+-
T Consensus       256 TK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q~~~~~d  319 (320)
T KOG2486|consen  256 TKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQLRGYWD  319 (320)
T ss_pred             ehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhhhhcccc
Confidence            9999764332  2333344444 22222333344578899999999999999988887665543

>cd04118 Rab24 Rab24 subfamily

Probab=99.91  E-value=1.1e-22  Score=152.41  Aligned_cols=158  Identities=19%  Similarity=0.225  Sum_probs=108.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +||+++|++|+|||||+++|++..+.. .+.++.+..........++   .+.+|||||.          ..+..+...+
T Consensus         1 ~ki~vvG~~~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~----------~~~~~~~~~~   70 (193)
T cd04118           1 VKVVMLGKESVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGS----------ERYEAMSRIY   70 (193)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHhh
Confidence            489999999999999999999876543 3555555444333344443   4668999983          2345566677


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc--CCCcEEEEEEccccccccc--CCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR--NNIPLTFVFTKCDKMKVAK--GRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~--~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+.... ..+..+..  .+.|+++|+||+|+.....  ..+..++..++....    +  .
T Consensus        71 ~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~----~--~  141 (193)
T cd04118          71 YRG---AKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEI----K--A  141 (193)
T ss_pred             cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccccccccCccCHHHHHHHHHHc----C--C
Confidence            766   8999999999987665432 12222222  4689999999999865321  222223333333322    1  5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+++.|++++++++.+.+.+
T Consensus       142 ~~~~~Sa~~~~gv~~l~~~i~~~~~~  167 (193)
T cd04118         142 QHFETSSKTGQNVDELFQKVAEDFVS  167 (193)
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            78999999999999999999986643

Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita

>cd04176 Rap2 Rap2 subgroup

Probab=99.91  E-value=5.8e-23  Score=149.82  Aligned_cols=154  Identities=17%  Similarity=0.179  Sum_probs=105.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++++...+.....++.+. ........++   .+.+|||||.          +.|..++..+
T Consensus         1 ~~ki~i~G~~~vGKTsl~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~   69 (163)
T cd04176           1 EYKVVVLGSGGVGKSALTVQFVSGTFIEKYDPTIED-FYRKEIEVDSSPSVLEILDTAGT----------EQFASMRDLY   69 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCchhh-eEEEEEEECCEEEEEEEEECCCc----------ccccchHHHH
Confidence            368999999999999999999987655544444331 1222222333   4678999994          3345667778


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+..+.. ...++.    ..++|+++|+||+|+....  .+...+...+...+    +  .
T Consensus        70 ~~~---ad~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~~~--~~~~~~~~~~~~~~----~--~  138 (163)
T cd04176          70 IKN---GQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESER--EVSSAEGRALAEEW----G--C  138 (163)
T ss_pred             Hhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhcC--ccCHHHHHHHHHHh----C--C
Confidence            777   89999999999877654431 112222    2579999999999986532  22222233333222    2  5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +++++||+++.|+++++.++.+.+
T Consensus       139 ~~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd04176         139 PFMETSAKSKTMVNELFAEIVRQM  162 (163)
T ss_pred             EEEEecCCCCCCHHHHHHHHHHhc
Confidence            889999999999999999998654

The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl

>cd04126 Rab20 Rab20 subfamily

Probab=99.91  E-value=1.1e-22  Score=154.75  Aligned_cols=161  Identities=22%  Similarity=0.192  Sum_probs=110.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      +||+++|.+|+|||||+++|+...+. ...++.+....... .....+.+|||||.          +.|..+...+++. 
T Consensus         1 ~KIvivG~~~vGKTSLi~r~~~~~f~-~~~~Tig~~~~~~~-~~~~~l~iwDt~G~----------e~~~~l~~~~~~~-   67 (220)
T cd04126           1 LKVVLLGDMNVGKTSLLHRYMERRFK-DTVSTVGGAFYLKQ-WGPYNISIWDTAGR----------EQFHGLGSMYCRG-   67 (220)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCCC-CCCCccceEEEEEE-eeEEEEEEEeCCCc----------ccchhhHHHHhcc-
Confidence            48999999999999999999998654 33343333222111 12346889999984          2345677788877 


Q ss_pred             CCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEccccccc-----------------ccCCCchHhHHHH
Q 027757          120 ESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKV-----------------AKGRRPDENIKSF  178 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~-----------------~~~~~~~~~~~~~  178 (219)
                        +|++|+|+|+++..++.... .+..+   ...+.|+++|+||+|+...                 ..+.+..++...+
T Consensus        68 --ad~~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~  145 (220)
T cd04126          68 --AAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAF  145 (220)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccccccccccccccccccccccccCCHHHHHHH
Confidence              89999999999987765532 11111   1256899999999998751                 1245555556565


Q ss_pred             HHHHHhc------C--CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          179 QQLIREN------Y--PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       179 ~~~~~~~------~--~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+.....      +  ....+++++||++|.|++++|..+.+.+.
T Consensus       146 a~~~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~  190 (220)
T cd04126         146 YKRINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVL  190 (220)
T ss_pred             HHHhCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            5543310      0  01257999999999999999999987553

Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo

>COG1160 Predicted GTPases [General function prediction only]

Probab=99.91  E-value=1.5e-23  Score=169.25  Aligned_cols=172  Identities=26%  Similarity=0.337  Sum_probs=132.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ...||+|+|.||+|||||+|+|++. ....+++.+|+|++.-..   ..+.++.++||.|+.....-..+.+.|..... 
T Consensus       177 ~~ikiaiiGrPNvGKSsLiN~ilge-eR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt-  254 (444)
T COG1160         177 DPIKIAIIGRPNVGKSSLINAILGE-ERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVART-  254 (444)
T ss_pred             CceEEEEEeCCCCCchHHHHHhccC-ceEEecCCCCccccceeeeEEECCeEEEEEECCCCCcccccccceEEEeehhh-
Confidence            4699999999999999999999997 799999999999975333   23458999999998654333333444433322 


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCCCe
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHPPW  192 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  192 (219)
                       +.....+|.|++|+|++++.+.+++.+..++.+.+.++++|+||||+....     ....+++...+...+  -...++
T Consensus       255 -~~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~-----~~~~~~~k~~i~~~l~~l~~a~i  328 (444)
T COG1160         255 -LKAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEED-----EATMEEFKKKLRRKLPFLDFAPI  328 (444)
T ss_pred             -HhHHhhcCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCch-----hhHHHHHHHHHHHHhccccCCeE
Confidence             223344899999999999999999999999999999999999999987641     123334433333322  234799


Q ss_pred             EEeecCCCCChHHHHHHHHHHHhhh
Q 027757          193 IMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++||+++.|+.++++.+.+....+
T Consensus       329 ~~iSA~~~~~i~~l~~~i~~~~~~~  353 (444)
T COG1160         329 VFISALTGQGLDKLFEAIKEIYECA  353 (444)
T ss_pred             EEEEecCCCChHHHHHHHHHHHHHh
Confidence            9999999999999999999877655

>cd04132 Rho4_like Rho4-like subfamily

Probab=99.91  E-value=9e-23  Score=152.17  Aligned_cols=157  Identities=13%  Similarity=0.104  Sum_probs=108.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-C---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-K---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +||+++|++|+|||||+++|.+..+...+.++.+...... .... +   .+.+|||||.          +.|..+...+
T Consensus         1 ~ki~vvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~-i~~~~~~~~~l~i~Dt~G~----------~~~~~~~~~~   69 (187)
T cd04132           1 KKIVVVGDGGCGKTCLLIVYSQGKFPEEYVPTVFENYVTN-IQGPNGKIIELALWDTAGQ----------EEYDRLRPLS   69 (187)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCCCCCeeeeeeEEE-EEecCCcEEEEEEEECCCc----------hhHHHHHHHh
Confidence            4899999999999999999999865544444433332222 2222 2   5788999983          3456667777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc--CCCchHhHHHHHHHHHhcCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK--GRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ++.   +|++|+|+|+++..++.... ..|+.     ..+.|+++|+||+|+.....  ..+...+.+++....+    .
T Consensus        70 ~~~---ad~ii~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~----~  141 (187)
T cd04132          70 YPD---VDVLLICYAVDNPTSLDNVE-DKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQG----A  141 (187)
T ss_pred             CCC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHHhCCCCCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcC----C
Confidence            766   89999999999877765432 12322     24789999999999865321  1223334444443322    1


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       .+++++||++|.|++++|+.+.+.+.+
T Consensus       142 -~~~~e~Sa~~~~~v~~~f~~l~~~~~~  168 (187)
T cd04132         142 -FAYLECSAKTMENVEEVFDTAIEEALK  168 (187)
T ss_pred             -cEEEEccCCCCCCHHHHHHHHHHHHHh
Confidence             278999999999999999999886654

Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.

>cd01860 Rab5_related Rab5-related subfamily

Probab=99.91  E-value=1.9e-22  Score=146.94  Aligned_cols=155  Identities=20%  Similarity=0.227  Sum_probs=108.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++++..+.....++.+..........+.   .+.+||+||.          +.+......+
T Consensus         1 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~~~~~~~~i~D~~G~----------~~~~~~~~~~   70 (163)
T cd01860           1 QFKLVLLGDSSVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQ----------ERYRSLAPMY   70 (163)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCch----------HHHHHHHHHH
Confidence            36999999999999999999999865554666666544333333333   6789999983          3456667777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++++|+|++++.+..... .+..+.   ..+.|+++++||+|+...  .....+....+....    +  .+
T Consensus        71 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~~~~~~~~~~~~~~----~--~~  139 (163)
T cd01860          71 YRG---AAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESK--RQVSTEEAQEYADEN----G--LL  139 (163)
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--CcCCHHHHHHHHHHc----C--CE
Confidence            777   89999999999876554321 112222   256899999999998743  222233333333322    1  57


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++++++++.+.+
T Consensus       140 ~~~~Sa~~~~~v~~l~~~l~~~l  162 (163)
T cd01860         140 FFETSAKTGENVNELFTEIAKKL  162 (163)
T ss_pred             EEEEECCCCCCHHHHHHHHHHHh
Confidence            99999999999999999998754

This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo

>KOG0094 consensus GTPase Rab6/YPT6/Ryh1, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=5.2e-23  Score=147.66  Aligned_cols=153  Identities=16%  Similarity=0.200  Sum_probs=122.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..||+++|..++||||||++|+...+...+..+.|.+.-.......+   .+.+|||.          ||++|+++...|
T Consensus        22 ~~KlVflGdqsVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~d~~vrLQlWDTA----------GQERFrslipsY   91 (221)
T KOG0094|consen   22 KYKLVFLGDQSVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTA----------GQERFRSLIPSY   91 (221)
T ss_pred             EEEEEEEccCccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEcCcEEEEEEEecc----------cHHHHhhhhhhh
Confidence            38999999999999999999999888888888888776544443333   46666665          599999999999


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +|+   +.++|+|+|+++..++.+.  -+|+..       .++-+++|+||.||.+.  +++..++-+...+.++     
T Consensus        92 ~Rd---s~vaviVyDit~~~Sfe~t--~kWi~dv~~e~gs~~viI~LVGnKtDL~dk--rqvs~eEg~~kAkel~-----  159 (221)
T KOG0094|consen   92 IRD---SSVAVIVYDITDRNSFENT--SKWIEDVRRERGSDDVIIFLVGNKTDLSDK--RQVSIEEGERKAKELN-----  159 (221)
T ss_pred             ccC---CeEEEEEEeccccchHHHH--HHHHHHHHhccCCCceEEEEEcccccccch--hhhhHHHHHHHHHHhC-----
Confidence            999   8999999999998887653  466663       35789999999999986  4455555565555555     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                       ..++++||+.|.|++++|..|...+
T Consensus       160 -a~f~etsak~g~NVk~lFrrIaa~l  184 (221)
T KOG0094|consen  160 -AEFIETSAKAGENVKQLFRRIAAAL  184 (221)
T ss_pred             -cEEEEecccCCCCHHHHHHHHHHhc
Confidence             5899999999999999999887654

>PRK12298 obgE GTPase CgtA; Reviewed

Probab=99.91  E-value=1.7e-22  Score=165.24  Aligned_cols=191  Identities=24%  Similarity=0.271  Sum_probs=130.6

Q ss_pred             ccccccccccceeeeeccCCCCCCCCCCCC--------------eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeE
Q 027757           11 GPYAGHSQIKEVEFVKSSGRAKDCPKDDRP--------------EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ   76 (219)
Q Consensus        11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~   76 (219)
                      ..+++.....|..|..+..+.++.+....+              .|+|+|.+|||||||+|+|++..  ..+++.+.+|+
T Consensus       117 ~a~GG~gG~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~iadValVG~PNaGKSTLln~Lt~~k--~~vs~~p~TT~  194 (390)
T PRK12298        117 VAKGGWHGLGNTRFKSSVNRAPRQKTPGTPGEERELKLELKLLADVGLLGLPNAGKSTFIRAVSAAK--PKVADYPFTTL  194 (390)
T ss_pred             EecCCCCccchhhhccCccCCCcccCCCCCCceEEEEEeeeccccEEEEcCCCCCHHHHHHHHhCCc--ccccCCCCCcc
Confidence            347777778888888888777776666655              89999999999999999999864  57888888888


Q ss_pred             EeeEEEe--c--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC---CCccc-HHHHHHhcc
Q 027757           77 LINHFLV--N--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP---PQKID-LDCANWLGR  148 (219)
Q Consensus        77 ~~~~~~~--~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~-~~~~~~~~~  148 (219)
                      .+.....  +  ..++++||||+........      .+...+++..+.+|++++|+|++..   ....+ ....+.+..
T Consensus       195 ~p~~Giv~~~~~~~i~~vDtPGi~~~a~~~~------~Lg~~~l~~i~radvlL~VVD~s~~~~~d~~e~~~~l~~eL~~  268 (390)
T PRK12298        195 VPNLGVVRVDDERSFVVADIPGLIEGASEGA------GLGIRFLKHLERCRVLLHLIDIAPIDGSDPVENARIIINELEK  268 (390)
T ss_pred             CcEEEEEEeCCCcEEEEEeCCCccccccchh------hHHHHHHHHHHhCCEEEEEeccCcccccChHHHHHHHHHHHHh
Confidence            7544333  2  2599999999864321111      1222333334458999999998832   22221 223333333


Q ss_pred             -----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          149 -----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       149 -----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                           .++|+++|+||+|+...       ..+.+..+.+...+....+++++||+++.|+++++++|.+.+..
T Consensus       269 ~~~~L~~kP~IlVlNKiDl~~~-------~el~~~l~~l~~~~~~~~~Vi~ISA~tg~GIdeLl~~I~~~L~~  334 (390)
T PRK12298        269 YSPKLAEKPRWLVFNKIDLLDE-------EEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEE  334 (390)
T ss_pred             hhhhhcCCCEEEEEeCCccCCh-------HHHHHHHHHHHHHhCCCCCEEEEECCCCcCHHHHHHHHHHHhhh
Confidence                 36899999999998653       22333334333333322478999999999999999999887643

>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans

Probab=99.91  E-value=2.3e-22  Score=147.35  Aligned_cols=159  Identities=25%  Similarity=0.265  Sum_probs=99.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|.+|+|||||+|+|++..+  ...+.++++.......   .+.++.+|||||+............+..+..  +
T Consensus         1 ~~i~~~G~~~~GKssli~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~--~   76 (168)
T cd01897           1 PTLVIAGYPNVGKSSLVNKLTRAKP--EVAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAITA--L   76 (168)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCC--ccCCCCCcccceeEEEEccCceEEEEEECCCcCCccccCCchHHHHHHHH--H
Confidence            5899999999999999999999743  2333444444333222   2348999999997432111111111111211  1


Q ss_pred             hccCCccEEEEEEeCCCCCCcc--c-HHHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKI--D-LDCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~--~-~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .  ..+|++|+|+|+++..+..  . ......+...  +.|+++|+||+|+....       ...+ .+.+...  ...+
T Consensus        77 ~--~~~d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~~-------~~~~-~~~~~~~--~~~~  144 (168)
T cd01897          77 A--HLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFE-------DLSE-IEEEEEL--EGEE  144 (168)
T ss_pred             H--hccCcEEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCchh-------hHHH-HHHhhhh--ccCc
Confidence            1  1158899999999865421  1 2334444443  79999999999997542       1111 1122111  2368


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++++++++.+.+
T Consensus       145 ~~~~Sa~~~~gi~~l~~~l~~~~  167 (168)
T cd01897         145 VLKISTLTEEGVDEVKNKACELL  167 (168)
T ss_pred             eEEEEecccCCHHHHHHHHHHHh
Confidence            99999999999999999998764

NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.91  E-value=2e-22  Score=168.58  Aligned_cols=171  Identities=27%  Similarity=0.342  Sum_probs=123.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHH-
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFT-  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~-  112 (219)
                      ...++|+++|.+|+|||||+|+|++. ......+.+++|.+.....   .+..+.++||||+..........+.|.... 
T Consensus       170 ~~~~~v~ivG~~~~GKSsLin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~e~~~~~~~  248 (429)
T TIGR03594       170 DGPIKIAIIGRPNVGKSTLVNALLGE-ERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGVEKYSVLRT  248 (429)
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHCC-CeeecCCCCCceECcEeEEEEECCcEEEEEECCCccccccchhhHHHHHHHHH
Confidence            34689999999999999999999997 3455667777776543222   234799999999754322222222222211 


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHP  190 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  190 (219)
                      ..+++.   +|++|+|+|++++.+..+..++..+...++|+++|+||+|+...      .+..+++.+.+...+.  ..+
T Consensus       249 ~~~~~~---ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~------~~~~~~~~~~~~~~~~~~~~~  319 (429)
T TIGR03594       249 LKAIER---ADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLVKD------EKTREEFKKELRRKLPFLDFA  319 (429)
T ss_pred             HHHHHh---CCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccCCC------HHHHHHHHHHHHHhcccCCCC
Confidence            123444   89999999999999988888788777788999999999999721      1334445455444332  247


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++++||++|.|++++++++.+..+.+
T Consensus       320 ~vi~~SA~~g~~v~~l~~~i~~~~~~~  346 (429)
T TIGR03594       320 PIVFISALTGQGVDKLLDAIDEVYENA  346 (429)
T ss_pred             ceEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999998877654

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>cd01861 Rab6 Rab6 subfamily

Probab=99.91  E-value=1.7e-22  Score=147.00  Aligned_cols=153  Identities=17%  Similarity=0.186  Sum_probs=106.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .||+++|++|+|||||+++|++..+.....+..+..........++   .+.+|||||.          ..++.+...++
T Consensus         1 ~ki~liG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~G~----------~~~~~~~~~~~   70 (161)
T cd01861           1 HKLVFLGDQSVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQ----------ERFRSLIPSYI   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHHHh
Confidence            4899999999999999999999865544444444333333333333   5789999983          34566677777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhc-c--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG-R--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      +.   +|++++|+|++++.+..... .+..+. .  .+.|+++++||+|+...  .....+....+.+...      .++
T Consensus        71 ~~---~~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~------~~~  139 (161)
T cd01861          71 RD---SSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDK--RQVSTEEGEKKAKELN------AMF  139 (161)
T ss_pred             cc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhcccc--CccCHHHHHHHHHHhC------CEE
Confidence            76   89999999999876654432 112111 1  35899999999999643  2223333333333321      679


Q ss_pred             EEeecCCCCChHHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +++||+++.|++++++++.+.
T Consensus       140 ~~~Sa~~~~~v~~l~~~i~~~  160 (161)
T cd01861         140 IETSAKAGHNVKELFRKIASA  160 (161)
T ss_pred             EEEeCCCCCCHHHHHHHHHHh
Confidence            999999999999999999764

Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate

>cd04154 Arl2 Arl2 subfamily

Probab=99.90  E-value=6.1e-23  Score=151.27  Aligned_cols=157  Identities=20%  Similarity=0.207  Sum_probs=104.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ....++|+++|++|+|||||+++|.+. ....+.++.+....... ..+..+.++||||.          ..++.++..+
T Consensus        11 ~~~~~kv~ivG~~~~GKTsL~~~l~~~-~~~~~~~t~g~~~~~~~-~~~~~l~l~D~~G~----------~~~~~~~~~~   78 (173)
T cd04154          11 KEREMRILILGLDNAGKTTILKKLLGE-DIDTISPTLGFQIKTLE-YEGYKLNIWDVGGQ----------KTLRPYWRNY   78 (173)
T ss_pred             CCCccEEEEECCCCCCHHHHHHHHccC-CCCCcCCccccceEEEE-ECCEEEEEEECCCC----------HHHHHHHHHH
Confidence            345689999999999999999999987 44444554442221111 12346889999984          2345566777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH--HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+....  .+..++.   ..+.|+++|+||+|+....    ..++++.+.+... .....+
T Consensus        79 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~----~~~~~~~~~~~~~-~~~~~~  150 (173)
T cd04154          79 FES---TDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGAL----SEEEIREALELDK-ISSHHW  150 (173)
T ss_pred             hCC---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcccccCC----CHHHHHHHhCccc-cCCCce
Confidence            776   8999999999987554332  1122222   2679999999999986531    1222322222110 011236


Q ss_pred             CeEEeecCCCCChHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      +++++||++|.|++++++++..
T Consensus       151 ~~~~~Sa~~g~gi~~l~~~l~~  172 (173)
T cd04154         151 RIQPCSAVTGEGLLQGIDWLVD  172 (173)
T ss_pred             EEEeccCCCCcCHHHHHHHHhc
Confidence            8999999999999999999853

Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.90  E-value=7.8e-23  Score=171.22  Aligned_cols=169  Identities=27%  Similarity=0.319  Sum_probs=122.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHH-
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK-  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~-  113 (219)
                      ..++|+++|.+|+|||||+|+|++. ......+.+++|.+....   ..+..+.++||||+........+.+.|..... 
T Consensus       172 ~~~~v~ivG~~n~GKStlin~ll~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~  250 (435)
T PRK00093        172 EPIKIAIIGRPNVGKSSLINALLGE-ERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRKGKVTEGVEKYSVIRTL  250 (435)
T ss_pred             cceEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCceEEEEEEEEEECCeeEEEEECCCCCCCcchhhHHHHHHHHHHH
Confidence            4689999999999999999999997 456677788888764322   23347999999997543322223333322211 


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHPP  191 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  191 (219)
                      .+++.   +|++|+|+|++++.+..+..+...+...++|+++|+||+|+.+.       +..++..+.+...+.  ...+
T Consensus       251 ~~~~~---ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~~-------~~~~~~~~~~~~~l~~~~~~~  320 (435)
T PRK00093        251 KAIER---ADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVDE-------KTMEEFKKELRRRLPFLDYAP  320 (435)
T ss_pred             HHHHH---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCCH-------HHHHHHHHHHHHhcccccCCC
Confidence            23334   89999999999999988888888888888999999999998743       223333333333221  3478


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++||+++.|++++++.+.+..+.+
T Consensus       321 i~~~SA~~~~gv~~l~~~i~~~~~~~  346 (435)
T PRK00093        321 IVFISALTGQGVDKLLEAIDEAYENA  346 (435)
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999998877654

>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily

Probab=99.90  E-value=2.2e-22  Score=147.83  Aligned_cols=154  Identities=19%  Similarity=0.263  Sum_probs=108.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHH-HHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWS-SFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~-~~~~~  114 (219)
                      .++|+++|++|+|||||++++++..+.....++.+.......+..++   .+.+|||||.          +.|. .+...
T Consensus         2 ~~ki~vvG~~~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~   71 (170)
T cd04115           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEIDGERIKVQLWDTAGQ----------ERFRKSMVQH   71 (170)
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEECCeEEEEEEEeCCCh----------HHHHHhhHHH
Confidence            47999999999999999999998765555555554443333333333   6789999984          2232 35566


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      +++.   +|++++|+|++++.+.....  .|+.       ..++|+++|+||+|+...  +.+..+...++.+..    .
T Consensus        72 ~~~~---~d~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~--~~~~~~~~~~~~~~~----~  140 (170)
T cd04115          72 YYRN---VHAVVFVYDVTNMASFHSLP--SWIEECEQHSLPNEVPRILVGNKCDLREQ--IQVPTDLAQRFADAH----S  140 (170)
T ss_pred             hhcC---CCEEEEEEECCCHHHHHhHH--HHHHHHHHhcCCCCCCEEEEEECccchhh--cCCCHHHHHHHHHHc----C
Confidence            6666   89999999999887765542  2332       256999999999998754  223333334443332    2


Q ss_pred             CCCCeEEeecCC---CCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVT---GLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~---~~~v~el~~~l~~~~~  215 (219)
                        ++++++||++   +.|++++|..+.+.++
T Consensus       141 --~~~~e~Sa~~~~~~~~i~~~f~~l~~~~~  169 (170)
T cd04115         141 --MPLFETSAKDPSENDHVEAIFMTLAHKLK  169 (170)
T ss_pred             --CcEEEEeccCCcCCCCHHHHHHHHHHHhh
Confidence              6899999999   8899999998887653

Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine

>PRK12299 obgE GTPase CgtA; Reviewed

Probab=99.90  E-value=2.2e-22  Score=161.59  Aligned_cols=191  Identities=25%  Similarity=0.276  Sum_probs=127.1

Q ss_pred             cccccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCee
Q 027757           10 VGPYAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT   75 (219)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t   75 (219)
                      +....+.....|..|..+..+.+.....+              ...|+|+|.+|||||||+|+|++..  +.+.+.+.+|
T Consensus       115 ~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adVglVG~PNaGKSTLln~ls~a~--~~va~ypfTT  192 (335)
T PRK12299        115 LVAKGGKGGLGNAHFKSSTNRAPRYATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTT  192 (335)
T ss_pred             EEecCCCCcCCchhhccccCCCCccccCCCCCcEEEEEEEEcccCCEEEEcCCCCCHHHHHHHHHcCC--CccCCCCCce
Confidence            33466777777878877666555433322              3689999999999999999999863  5577777877


Q ss_pred             EEeeEEE--e--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc--
Q 027757           76 QLINHFL--V--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR--  148 (219)
Q Consensus        76 ~~~~~~~--~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--  148 (219)
                      ..+....  .  ..++.++|+||+.......      ..+...|++..+.++++|+|+|+++..+..+.. ....+..  
T Consensus       193 ~~p~~G~v~~~~~~~~~i~D~PGli~ga~~~------~gLg~~flrhie~a~vlI~ViD~s~~~s~e~~~~~~~EL~~~~  266 (335)
T PRK12299        193 LHPNLGVVRVDDYKSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRLLLHLVDIEAVDPVEDYKTIRNELEKYS  266 (335)
T ss_pred             eCceEEEEEeCCCcEEEEEeCCCccCCCCcc------ccHHHHHHHHhhhcCEEEEEEcCCCCCCHHHHHHHHHHHHHhh
Confidence            7654433  2  2369999999975322111      123445555556689999999999765443322 2222222  


Q ss_pred             ---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          149 ---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       149 ---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                         .++|+++|+||+|+.+...      ..+...+......  ..+++++||+++.|+++++++|.+.+..
T Consensus       267 ~~L~~kp~IIV~NKiDL~~~~~------~~~~~~~~~~~~~--~~~i~~iSAktg~GI~eL~~~L~~~l~~  329 (335)
T PRK12299        267 PELADKPRILVLNKIDLLDEEE------EREKRAALELAAL--GGPVFLISAVTGEGLDELLRALWELLEE  329 (335)
T ss_pred             hhcccCCeEEEEECcccCCchh------HHHHHHHHHHHhc--CCCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence               3689999999999875421      1111111111111  2589999999999999999999887754

>cd01863 Rab18 Rab18 subfamily

Probab=99.90  E-value=1.8e-22  Score=146.91  Aligned_cols=152  Identities=22%  Similarity=0.227  Sum_probs=108.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|++..+.....++.+.+........+   ..+.++||||.          ..+......++
T Consensus         1 ~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~   70 (161)
T cd01863           1 LKILLIGDSGVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQ----------ERFRTLTSSYY   70 (161)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhHHHh
Confidence            589999999999999999999986555567777666554433333   36889999994          22344555666


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH-H----HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC-A----NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~----~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|++++.+...... +    .+....+.|+++|+||+|+...   ....++..++....      .++
T Consensus        71 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~~---~~~~~~~~~~~~~~------~~~  138 (161)
T cd01863          71 RG---AQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENR---EVTREEGLKFARKH------NML  138 (161)
T ss_pred             CC---CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCccccc---ccCHHHHHHHHHHc------CCE
Confidence            55   899999999998776544321 1    1222367899999999999732   22233444444332      268


Q ss_pred             eEEeecCCCCChHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ++++||++|.|++++++++.+.
T Consensus       139 ~~~~Sa~~~~gi~~~~~~~~~~  160 (161)
T cd01863         139 FIETSAKTRDGVQQAFEELVEK  160 (161)
T ss_pred             EEEEecCCCCCHHHHHHHHHHh
Confidence            9999999999999999988764

Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos

>PRK00089 era GTPase Era; Reviewed

Probab=99.90  E-value=2.3e-22  Score=160.03  Aligned_cols=162  Identities=27%  Similarity=0.298  Sum_probs=115.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ..|+++|++|||||||+|+|++. ..+.+++.+.+++....  ...+ .++.++||||+.....  ...   +.+.....
T Consensus         6 g~V~iiG~pn~GKSTLin~L~g~-~~~~vs~~~~tt~~~i~~i~~~~~~qi~~iDTPG~~~~~~--~l~---~~~~~~~~   79 (292)
T PRK00089          6 GFVAIVGRPNVGKSTLLNALVGQ-KISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKR--ALN---RAMNKAAW   79 (292)
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC-ceeecCCCCCcccccEEEEEEcCCceEEEEECCCCCCchh--HHH---HHHHHHHH
Confidence            46999999999999999999997 46667777777665322  2222 4899999999753321  111   11222222


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      .....+|++++|+|+++..+..+..+...+...+.|+++|+||+|+...      ........+.+...++ ..+++++|
T Consensus        80 ~~~~~~D~il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~~~------~~~l~~~~~~l~~~~~-~~~i~~iS  152 (292)
T PRK00089         80 SSLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVKD------KEELLPLLEELSELMD-FAEIVPIS  152 (292)
T ss_pred             HHHhcCCEEEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCCCC------HHHHHHHHHHHHhhCC-CCeEEEec
Confidence            2334489999999999866665566667777678999999999999732      1344455555554333 36899999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~  214 (219)
                      |+++.|++++++++.+.+
T Consensus       153 A~~~~gv~~L~~~L~~~l  170 (292)
T PRK00089        153 ALKGDNVDELLDVIAKYL  170 (292)
T ss_pred             CCCCCCHHHHHHHHHHhC
Confidence            999999999999998765

>PTZ00133 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=1.8e-22  Score=149.88  Aligned_cols=160  Identities=15%  Similarity=0.098  Sum_probs=107.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...+||+++|++|+|||||++++....+. .+.++.+....  ... .+..+.++||||.          ..++.++..+
T Consensus        15 ~~~~kv~lvG~~~vGKTsli~~~~~~~~~-~~~~T~~~~~~--~~~~~~~~~~l~D~~G~----------~~~~~~~~~~   81 (182)
T PTZ00133         15 KKEVRILMVGLDAAGKTTILYKLKLGEVV-TTIPTIGFNVE--TVEYKNLKFTMWDVGGQ----------DKLRPLWRHY   81 (182)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCcc-ccCCccccceE--EEEECCEEEEEEECCCC----------HhHHHHHHHH
Confidence            34589999999999999999999765443 34444443322  122 2346889999984          3456778888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~  188 (219)
                      ++.   +|++|+|+|++++.+..+.  .+.+.+..   .++|+++|+||.|+....       ..++....++...  ..
T Consensus        82 ~~~---ad~iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~l~~~~~~~~  151 (182)
T PTZ00133         82 YQN---TNGLIFVVDSNDRERIGDAREELERMLSEDELRDAVLLVFANKQDLPNAM-------STTEVTEKLGLHSVRQR  151 (182)
T ss_pred             hcC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCCCC-------CHHHHHHHhCCCcccCC
Confidence            888   9999999999986554432  12222222   468999999999986421       1123333333211  11


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhhhcC
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ  219 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~~  219 (219)
                      .+.++++||++|.|++++++||.+.+.+..|
T Consensus       152 ~~~~~~~Sa~tg~gv~e~~~~l~~~i~~~~~  182 (182)
T PTZ00133        152 NWYIQGCCATTAQGLYEGLDWLSANIKKSMQ  182 (182)
T ss_pred             cEEEEeeeCCCCCCHHHHHHHHHHHHHHhcC
Confidence            2346789999999999999999987665543

>PLN03118 Rab family protein; Provisional

Probab=99.90  E-value=3.3e-22  Score=151.98  Aligned_cols=157  Identities=18%  Similarity=0.171  Sum_probs=111.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+||+++|.+|+|||||+++|++.. ...+.++.+.+..+..+..++   .+.++||||.          ..|..+..
T Consensus        12 ~~~~kv~ivG~~~vGKTsli~~l~~~~-~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~   80 (211)
T PLN03118         12 DLSFKILLIGDSGVGKSSLLVSFISSS-VEDLAPTIGVDFKIKQLTVGGKRLKLTIWDTAGQ----------ERFRTLTS   80 (211)
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCC-CCCcCCCceeEEEEEEEEECCEEEEEEEEECCCc----------hhhHHHHH
Confidence            346899999999999999999999874 455666666555444444433   5789999993          34456677


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHH-H-HHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDC-A-NWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~-~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .+++.   +|++|+|+|++++.++..... + ..+.    ..+.|+++|+||+|+....  ....+....+....     
T Consensus        81 ~~~~~---~d~~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~--~i~~~~~~~~~~~~-----  150 (211)
T PLN03118         81 SYYRN---AQGIILVYDVTRRETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRESER--DVSREEGMALAKEH-----  150 (211)
T ss_pred             HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC--ccCHHHHHHHHHHc-----
Confidence            78877   899999999998776654321 1 1111    2467999999999987542  22223333333221     


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       .++++++||+++.|+++++++|.+.+.
T Consensus       151 -~~~~~e~SAk~~~~v~~l~~~l~~~~~  177 (211)
T PLN03118        151 -GCLFLECSAKTRENVEQCFEELALKIM  177 (211)
T ss_pred             -CCEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             257999999999999999999987653

>cd04101 RabL4 RabL4 (Rab-like4) subfamily

Probab=99.90  E-value=2.9e-22  Score=146.21  Aligned_cols=152  Identities=19%  Similarity=0.284  Sum_probs=104.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC--cccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRK--KELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      +||+++|++|+|||||+++|.+.  .+...+.++.+..........    ...+.+|||||          +..+..+..
T Consensus         1 ~ki~vvG~~~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~~~~~~~~~   70 (164)
T cd04101           1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAG----------QELYSDMVS   70 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeCCCCEEEEEEEECCC----------HHHHHHHHH
Confidence            48999999999999999999864  344555555554433332322    12688999998          345566677


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .+++.   +|++++|+|++++.+....  ..|+..     .+.|+++|+||+|+.+..  +........+..    .++ 
T Consensus        71 ~~~~~---~d~ii~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~----~~~-  138 (164)
T cd04101          71 NYWES---PSVFILVYDVSNKASFENC--SRWVNKVRTASKHMPGVLVGNKMDLADKA--EVTDAQAQAFAQ----ANQ-  138 (164)
T ss_pred             HHhCC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccccccc--CCCHHHHHHHHH----HcC-
Confidence            77766   8999999999987665332  233332     468999999999986542  122222222222    122 


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                       .+++++||+++.|++++++++.+..
T Consensus       139 -~~~~~~Sa~~~~gi~~l~~~l~~~~  163 (164)
T cd04101         139 -LKFFKTSALRGVGYEEPFESLARAF  163 (164)
T ss_pred             -CeEEEEeCCCCCChHHHHHHHHHHh
Confidence             5799999999999999999998754

RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.

>PLN03108 Rab family protein; Provisional

Probab=99.90  E-value=3.9e-22  Score=151.39  Aligned_cols=156  Identities=21%  Similarity=0.271  Sum_probs=112.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+|+|++|+|||||+++|++..+.....++.+.+........++   .+.+|||+|.          +.|..++..
T Consensus         5 ~~~kivivG~~gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~~~~i~l~l~Dt~G~----------~~~~~~~~~   74 (210)
T PLN03108          5 YLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITIDNKPIKLQIWDTAGQ----------ESFRSITRS   74 (210)
T ss_pred             cceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEECCEEEEEEEEeCCCc----------HHHHHHHHH
Confidence            468999999999999999999998766555555555544433333333   5778999883          345666777


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +++.   +|++|+|+|++++.++...  ..|+.      ..+.|+++|+||+|+...  +....++.+++.+...     
T Consensus        75 ~~~~---ad~~vlv~D~~~~~s~~~l--~~~~~~~~~~~~~~~piiiv~nK~Dl~~~--~~~~~~~~~~~~~~~~-----  142 (210)
T PLN03108         75 YYRG---AAGALLVYDITRRETFNHL--ASWLEDARQHANANMTIMLIGNKCDLAHR--RAVSTEEGEQFAKEHG-----  142 (210)
T ss_pred             Hhcc---CCEEEEEEECCcHHHHHHH--HHHHHHHHHhcCCCCcEEEEEECccCccc--cCCCHHHHHHHHHHcC-----
Confidence            7777   8999999999987766543  12222      257899999999998653  2233344455544322     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       .+++++||+++.|++++|+++.+.+.+
T Consensus       143 -~~~~e~Sa~~~~~v~e~f~~l~~~~~~  169 (210)
T PLN03108        143 -LIFMEASAKTAQNVEEAFIKTAAKIYK  169 (210)
T ss_pred             -CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             589999999999999999999876543

>cd04157 Arl6 Arl6 subfamily

Probab=99.90  E-value=6.5e-23  Score=149.25  Aligned_cols=151  Identities=21%  Similarity=0.285  Sum_probs=101.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           41 EFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      +|+++|++|+|||||+++|.+.. +...+.++.+.+.... ...+..+.++||||..          .+..++..+++. 
T Consensus         1 ~i~~vG~~~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~-~~~~~~~~l~Dt~G~~----------~~~~~~~~~~~~-   68 (162)
T cd04157           1 NILVVGLDNSGKTTIINQLKPENAQSQIIVPTVGFNVESF-EKGNLSFTAFDMSGQG----------KYRGLWEHYYKN-   68 (162)
T ss_pred             CEEEECCCCCCHHHHHHHHcccCCCcceecCccccceEEE-EECCEEEEEEECCCCH----------hhHHHHHHHHcc-
Confidence            58999999999999999999864 2344555555433211 1223468899999942          346677778777 


Q ss_pred             CCccEEEEEEeCCCCCCcccH--HHHHHh-----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCCC
Q 027757          120 ESLVGVLLLIDASVPPQKIDL--DCANWL-----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHP  190 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~--~~~~~~-----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  190 (219)
                        +|++|+|+|++++.+....  .+...+     ...++|+++|+||+|+....       ..+++.+.+...  .....
T Consensus        69 --~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~-------~~~~~~~~l~~~~~~~~~~  139 (162)
T cd04157          69 --IQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDAL-------TAVKITQLLGLENIKDKPW  139 (162)
T ss_pred             --CCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCC-------CHHHHHHHhCCccccCceE
Confidence              8999999999987654221  111111     12479999999999986531       112222222111  11234


Q ss_pred             CeEEeecCCCCChHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      +++++||++|.|+++++++|.+
T Consensus       140 ~~~~~Sa~~g~gv~~~~~~l~~  161 (162)
T cd04157         140 HIFASNALTGEGLDEGVQWLQA  161 (162)
T ss_pred             EEEEeeCCCCCchHHHHHHHhc
Confidence            6899999999999999999864

Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A

>PLN00223 ADP-ribosylation factor; Provisional

Probab=99.90  E-value=2.5e-22  Score=149.02  Aligned_cols=157  Identities=17%  Similarity=0.164  Sum_probs=107.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...+||+++|.+|+|||||++++....+ ..+.++.+....  .... +..+.+||+||          +..+..++..+
T Consensus        15 ~~~~ki~ivG~~~~GKTsl~~~l~~~~~-~~~~pt~g~~~~--~~~~~~~~~~i~D~~G----------q~~~~~~~~~~   81 (181)
T PLN00223         15 KKEMRILMVGLDAAGKTTILYKLKLGEI-VTTIPTIGFNVE--TVEYKNISFTVWDVGG----------QDKIRPLWRHY   81 (181)
T ss_pred             CCccEEEEECCCCCCHHHHHHHHccCCC-ccccCCcceeEE--EEEECCEEEEEEECCC----------CHHHHHHHHHH
Confidence            3458999999999999999999987543 334444443322  1222 33688999998          34567788888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~  188 (219)
                      ++.   +|++|+|+|++++.+....  .+...+..   .++|+++|+||+|+....       ..+++.+.++...  ..
T Consensus        82 ~~~---a~~iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~~-------~~~~~~~~l~l~~~~~~  151 (181)
T PLN00223         82 FQN---TQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRQR  151 (181)
T ss_pred             hcc---CCEEEEEEeCCcHHHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCCC-------CHHHHHHHhCccccCCC
Confidence            888   8999999999987665432  12222222   478999999999986531       2334444443211  11


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+.++++||++|.|++++++||.+.+..
T Consensus       152 ~~~~~~~Sa~~g~gv~e~~~~l~~~~~~  179 (181)
T PLN00223        152 HWYIQSTCATSGEGLYEGLDWLSNNIAN  179 (181)
T ss_pred             ceEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence            2245689999999999999999887654

>PRK15494 era GTPase Era; Provisional

Probab=99.90  E-value=2e-22  Score=162.83  Aligned_cols=162  Identities=23%  Similarity=0.279  Sum_probs=110.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ...+|+++|.+|+|||||+|+|++. ....+++.+++|+...  .+.. +.++.+|||||....... .+    ..+...
T Consensus        51 k~~kV~ivG~~nvGKSTLin~l~~~-k~~ivs~k~~tTr~~~~~~~~~~~~qi~~~DTpG~~~~~~~-l~----~~~~r~  124 (339)
T PRK15494         51 KTVSVCIIGRPNSGKSTLLNRIIGE-KLSIVTPKVQTTRSIITGIITLKDTQVILYDTPGIFEPKGS-LE----KAMVRC  124 (339)
T ss_pred             ceeEEEEEcCCCCCHHHHHHHHhCC-ceeeccCCCCCccCcEEEEEEeCCeEEEEEECCCcCCCccc-HH----HHHHHH
Confidence            3459999999999999999999997 4556677777776432  2222 447999999997532111 11    223333


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      .+.....+|++++|+|+.+.....+...+..+...+.|.++|+||+|+...        ...+..+.+.... ....+++
T Consensus       125 ~~~~l~~aDvil~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~~--------~~~~~~~~l~~~~-~~~~i~~  195 (339)
T PRK15494        125 AWSSLHSADLVLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIESK--------YLNDIKAFLTENH-PDSLLFP  195 (339)
T ss_pred             HHHHhhhCCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCccc--------cHHHHHHHHHhcC-CCcEEEE
Confidence            322234489999999988765554445566666667888999999998642        1233333333222 2257999


Q ss_pred             eecCCCCChHHHHHHHHHHH
Q 027757          195 TSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +||++|.|+++++++|.+.+
T Consensus       196 iSAktg~gv~eL~~~L~~~l  215 (339)
T PRK15494        196 ISALSGKNIDGLLEYITSKA  215 (339)
T ss_pred             EeccCccCHHHHHHHHHHhC
Confidence            99999999999999998764

>cd04123 Rab21 Rab21 subfamily

Probab=99.90  E-value=4.3e-22  Score=144.71  Aligned_cols=154  Identities=20%  Similarity=0.233  Sum_probs=103.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|++..+.....+..............   ..+.+||+||.          ..+..+...++
T Consensus         1 ~ki~i~G~~~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~~~   70 (162)
T cd04123           1 FKVVLLGEGRVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQ----------ERYHALGPIYY   70 (162)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEECCEEEEEEEEECCch----------HHHHHhhHHHh
Confidence            589999999999999999999875433333232222222222222   25789999983          34556677777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH-H---HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC-A---NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~---~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      ..   +|++++|+|++++.+...... .   ......++|+++|+||+|+...  .....+...++.+..      ..++
T Consensus        71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~~--~~~~~~~~~~~~~~~------~~~~  139 (162)
T cd04123          71 RD---ADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQ--RVVSKSEAEEYAKSV------GAKH  139 (162)
T ss_pred             cc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--cCCCHHHHHHHHHHc------CCEE
Confidence            66   899999999998766543311 1   1112247899999999998743  222233344443332      2578


Q ss_pred             EEeecCCCCChHHHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +++|++++.|++++++++.+.+
T Consensus       140 ~~~s~~~~~gi~~~~~~l~~~~  161 (162)
T cd04123         140 FETSAKTGKGIEELFLSLAKRM  161 (162)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999997754

The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site

>cd01892 Miro2 Miro2 subfamily

Probab=99.90  E-value=1e-22  Score=149.51  Aligned_cols=158  Identities=18%  Similarity=0.114  Sum_probs=105.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc-ccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKEL-ALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      +.+||+++|.+|+|||||+++|++..+. ..+.++.+..........++   .+.++|++|..          .+..+..
T Consensus         3 ~~~kv~~vG~~~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~~~~~~l~~~d~~g~~----------~~~~~~~   72 (169)
T cd01892           3 NVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDE----------VAILLND   72 (169)
T ss_pred             eEEEEEEECCCCCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEECCeEEEEEEEecCCcc----------cccccch
Confidence            4679999999999999999999998665 55556555443333333333   46778888742          2234455


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhc-cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLG-RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .+++.   +|++++|+|++++.+.... .....+. ..++|+++|+||+|+.+...  +.....+++.+.++    . ..
T Consensus        73 ~~~~~---~d~~llv~d~~~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~~----~-~~  142 (169)
T cd01892          73 AELAA---CDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQ--RYEVQPDEFCRKLG----L-PP  142 (169)
T ss_pred             hhhhc---CCEEEEEEeCCCHHHHHHHHHHHHHhccCCCCeEEEEEEccccccccc--ccccCHHHHHHHcC----C-CC
Confidence            66666   8999999999987554332 2222221 24799999999999865321  11122334433322    1 24


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||+++.|++++|+.+.+.+-
T Consensus       143 ~~~~Sa~~~~~v~~lf~~l~~~~~  166 (169)
T cd01892         143 PLHFSSKLGDSSNELFTKLATAAQ  166 (169)
T ss_pred             CEEEEeccCccHHHHHHHHHHHhh
Confidence            689999999999999999988653

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>cd04163 Era Era subfamily

Probab=99.90  E-value=7.9e-22  Score=143.64  Aligned_cols=162  Identities=28%  Similarity=0.321  Sum_probs=112.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..+|+++|++|+|||||+|+|++.. .+...+...++.......   .+..+.++||||+......  ....+.......
T Consensus         3 ~~~i~~~G~~g~GKttl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~~~~~~--~~~~~~~~~~~~   79 (168)
T cd04163           3 SGFVAIVGRPNVGKSTLLNALVGQK-ISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKK--LGERMVKAAWSA   79 (168)
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCc-eEeccCCCCceeceEEEEEEcCCeEEEEEECCCCCcchHH--HHHHHHHHHHHH
Confidence            4689999999999999999999973 444444444444322221   1246899999997533211  111122233333


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      +..   +|++++|+|++++.+.........+...+.|+++|+||+|+...      .....++.+.+....+ ..+++++
T Consensus        80 ~~~---~d~i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~------~~~~~~~~~~~~~~~~-~~~~~~~  149 (168)
T cd04163          80 LKD---VDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKD------KEDLLPLLEKLKELGP-FAEIFPI  149 (168)
T ss_pred             HHh---CCEEEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhcccc------HHHHHHHHHHHHhccC-CCceEEE
Confidence            444   89999999999885555556666676678999999999998742      1344555555554433 3589999


Q ss_pred             ecCCCCChHHHHHHHHHH
Q 027757          196 SSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~  213 (219)
                      |++++.|+++++++|.+.
T Consensus       150 s~~~~~~~~~l~~~l~~~  167 (168)
T cd04163         150 SALKGENVDELLEEIVKY  167 (168)
T ss_pred             EeccCCChHHHHHHHHhh
Confidence            999999999999999775

Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.

>cd01894 EngA1 EngA1 subfamily

Probab=99.90  E-value=2.5e-22  Score=145.20  Aligned_cols=153  Identities=23%  Similarity=0.257  Sum_probs=105.3

Q ss_pred             EEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           43 AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        43 ~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      +++|.+|+|||||+|+|++.. .....+.++++......   ..+..+.++||||+.....  .-...+......+++. 
T Consensus         1 ~l~G~~~~GKssl~~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~i~DtpG~~~~~~--~~~~~~~~~~~~~~~~-   76 (157)
T cd01894           1 AIVGRPNVGKSTLFNRLTGRR-DAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDE--GISKEIREQAELAIEE-   76 (157)
T ss_pred             CccCCCCCCHHHHHHHHhCCc-EEeecCCCCceeCceeEEEEECCeEEEEEECCCCCCchh--HHHHHHHHHHHHHHHh-
Confidence            479999999999999999973 44445556665543222   2234789999999864321  1111111222233344 


Q ss_pred             CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          120 ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                        +|++++|+|+.++.+..+..+.+++...+.|+++|+||+|+.....      .    ...+.. .+. .+++++|+++
T Consensus        77 --~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~~------~----~~~~~~-~~~-~~~~~~Sa~~  142 (157)
T cd01894          77 --ADVILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEED------E----AAEFYS-LGF-GEPIPISAEH  142 (157)
T ss_pred             --CCEEEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChHH------H----HHHHHh-cCC-CCeEEEeccc
Confidence              8999999999987777777777888888899999999999976421      1    111211 111 3789999999


Q ss_pred             CCChHHHHHHHHHH
Q 027757          200 GLGRDELLLHMSQL  213 (219)
Q Consensus       200 ~~~v~el~~~l~~~  213 (219)
                      +.|++++++++.+.
T Consensus       143 ~~gv~~l~~~l~~~  156 (157)
T cd01894         143 GRGIGDLLDAILEL  156 (157)
T ss_pred             CCCHHHHHHHHHhh
Confidence            99999999999864

This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>cd01895 EngA2 EngA2 subfamily

Probab=99.90  E-value=8.1e-22  Score=144.67  Aligned_cols=166  Identities=28%  Similarity=0.364  Sum_probs=111.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHH-HH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFT-KG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~-~~  114 (219)
                      .++|+++|.+|+|||||+|+|++.. .......++++...  .... .+..+.+|||||+..........+.+.... ..
T Consensus         2 ~~~i~i~G~~~~GKstli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~   80 (174)
T cd01895           2 PIRIAIIGRPNVGKSSLVNALLGEE-RVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK   80 (174)
T ss_pred             CcEEEEEcCCCCCHHHHHHHHhCcc-ceeccCCCCCccCceeeEEEECCeeEEEEECCCCccccchhccHHHHHHHHHHH
Confidence            5789999999999999999999973 33334444444332  1222 234689999999754321111112222111 12


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCCCe
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHPPW  192 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  192 (219)
                      .+..   +|++++|+|+.++.+.........+...+.|+++++||+|+.+..     ....+...+.+...++  ...++
T Consensus        81 ~~~~---~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~  152 (174)
T cd01895          81 AIER---ADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKD-----SKTMKEFKKEIRRKLPFLDYAPI  152 (174)
T ss_pred             HHhh---cCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCcc-----HHHHHHHHHHHHhhcccccCCce
Confidence            2333   899999999999887766666666666789999999999987642     1234444444444333  23689


Q ss_pred             EEeecCCCCChHHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +++||+++.|++++++++.+.
T Consensus       153 ~~~Sa~~~~~i~~~~~~l~~~  173 (174)
T cd01895         153 VFISALTGQGVDKLFDAIDEV  173 (174)
T ss_pred             EEEeccCCCCHHHHHHHHHHh
Confidence            999999999999999998764

This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor

Probab=99.90  E-value=2.9e-22  Score=147.91  Aligned_cols=156  Identities=15%  Similarity=0.137  Sum_probs=103.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...+||+++|.+|+|||||++++....+. .+.++.+....  ... .+..+.++||||.          ..+..++..+
T Consensus        11 ~~~~ki~l~G~~~~GKTsL~~~~~~~~~~-~~~~t~~~~~~--~~~~~~~~l~l~D~~G~----------~~~~~~~~~~   77 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGESV-TTIPTIGFNVE--TVTYKNISFTVWDVGGQ----------DKIRPLWRHY   77 (175)
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHhcCCCC-CcCCccccceE--EEEECCEEEEEEECCCC----------hhhHHHHHHH
Confidence            34689999999999999999999765442 33333332221  222 2336889999984          3346677888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-HHHH-Hhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-DCAN-WLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~-~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~  188 (219)
                      ++.   +|++|+|+|++++.+.... +.+. .+..   .+.|+++|+||+|+.+..    .   .+++.+.++..  -..
T Consensus        78 ~~~---ad~ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~----~---~~~i~~~~~~~~~~~~  147 (175)
T smart00177       78 YTN---TQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAM----K---AAEITEKLGLHSIRDR  147 (175)
T ss_pred             hCC---CCEEEEEEECCCHHHHHHHHHHHHHHhhCHhhcCCcEEEEEeCcCcccCC----C---HHHHHHHhCccccCCC
Confidence            888   8999999999987654331 1121 2121   368999999999986431    1   12222222211  112


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...++++||++|.|++++++||.+.+.
T Consensus       148 ~~~~~~~Sa~~g~gv~e~~~~l~~~~~  174 (175)
T smart00177      148 NWYIQPTCATSGDGLYEGLTWLSNNLK  174 (175)
T ss_pred             cEEEEEeeCCCCCCHHHHHHHHHHHhc
Confidence            235678999999999999999987653

Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).

>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases

Probab=99.90  E-value=8.7e-23  Score=150.44  Aligned_cols=154  Identities=15%  Similarity=0.103  Sum_probs=103.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      |+|+|++|+|||||+++|.+..+...+.+....... .....++   .+.+|||||.          +.|..+...+++.
T Consensus         1 i~i~G~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~~~   69 (174)
T smart00174        1 LVVVGDGAVGKTCLLISYTTNAFPEDYVPTVFENYS-ADVEVDGKPVELGLWDTAGQ----------EDYDRLRPLSYPD   69 (174)
T ss_pred             CEEECCCCCCHHHHHHHHHhCCCCCCCCCcEEeeee-EEEEECCEEEEEEEEECCCC----------cccchhchhhcCC
Confidence            589999999999999999998655444444332222 2222223   5789999994          2334555666666


Q ss_pred             cCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHHHh
Q 027757          119 RESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLIRE  184 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~~~  184 (219)
                         +|++|+|+|++++.+.....  ....+.  ..+.|+++|+||+|+.....          ..+..++.+++.+..+ 
T Consensus        70 ---~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-  145 (174)
T smart00174       70 ---TDVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG-  145 (174)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC-
Confidence               89999999999877665431  122222  25799999999999875321          1122233333333322 


Q ss_pred             cCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                          ..+++++||+++.|++++|+.+.+.+
T Consensus       146 ----~~~~~e~Sa~~~~~v~~lf~~l~~~~  171 (174)
T smart00174      146 ----AVKYLECSALTQEGVREVFEEAIRAA  171 (174)
T ss_pred             ----CcEEEEecCCCCCCHHHHHHHHHHHh
Confidence                13789999999999999999998765

Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.

>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily

Probab=99.90  E-value=2.8e-22  Score=152.56  Aligned_cols=156  Identities=15%  Similarity=0.151  Sum_probs=110.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +.||+++|.+|+|||||+++|.+..+...+.++.+...... +..++   .+.+|||+|          ++.|..+...+
T Consensus         1 ~~KIvvvGd~~vGKTsLi~~~~~~~f~~~y~pTi~~~~~~~-~~~~~~~v~L~iwDt~G----------~e~~~~l~~~~   69 (222)
T cd04173           1 RCKIVVVGDAECGKTALLQVFAKDAYPGSYVPTVFENYTAS-FEIDKRRIELNMWDTSG----------SSYYDNVRPLA   69 (222)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHcCCCCCccCCccccceEEE-EEECCEEEEEEEEeCCC----------cHHHHHHhHHh
Confidence            36899999999999999999999877666666665444322 22222   577889987          44567777888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ  180 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~  180 (219)
                      ++.   +|++|+|+|++++.++.... ..|..     ..+.|+++|+||+|+.....          ..+..++.+.+.+
T Consensus        70 ~~~---~d~illvfdis~~~Sf~~i~-~~w~~~~~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak  145 (222)
T cd04173          70 YPD---SDAVLICFDISRPETLDSVL-KKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAK  145 (222)
T ss_pred             ccC---CCEEEEEEECCCHHHHHHHH-HHHHHHHHhhCCCCCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHH
Confidence            887   99999999999987765431 12222     25789999999999865311          1122333344433


Q ss_pred             HHHhcCCCCCCeEEeecCCCCC-hHHHHHHHHHHH
Q 027757          181 LIRENYPHHPPWIMTSSVTGLG-RDELLLHMSQLR  214 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~~-v~el~~~l~~~~  214 (219)
                      .++.     .+|+++||+++.+ ++++|+......
T Consensus       146 ~~~~-----~~y~E~SAk~~~~~V~~~F~~~~~~~  175 (222)
T cd04173         146 QVGA-----VSYVECSSRSSERSVRDVFHVATVAS  175 (222)
T ss_pred             HcCC-----CEEEEcCCCcCCcCHHHHHHHHHHHH
Confidence            3321     4899999999885 999999987754

Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma

>cd04150 Arf1_5_like Arf1-Arf5-like subfamily

Probab=99.90  E-value=3.2e-22  Score=145.45  Aligned_cols=151  Identities=17%  Similarity=0.116  Sum_probs=99.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      .||+++|.+|+|||||++++....+. .+.++.+...... ......+.+|||||.          ..+..++..+++. 
T Consensus         1 ~kv~~~G~~~~GKTsli~~l~~~~~~-~~~pt~g~~~~~~-~~~~~~~~l~D~~G~----------~~~~~~~~~~~~~-   67 (159)
T cd04150           1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFNVETV-EYKNISFTVWDVGGQ----------DKIRPLWRHYFQN-   67 (159)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCc-ccCCCCCcceEEE-EECCEEEEEEECCCC----------HhHHHHHHHHhcC-
Confidence            48999999999999999999765443 3444444322211 112346899999984          3356677888888 


Q ss_pred             CCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCCCCCe
Q 027757          120 ESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPHHPPW  192 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  192 (219)
                        +|++|+|+|+++..+.....  +...+..   .+.|+++++||+|+.+..    .   .++..+.+..  .......+
T Consensus        68 --ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~----~---~~~i~~~~~~~~~~~~~~~~  138 (159)
T cd04150          68 --TQGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAM----S---AAEVTDKLGLHSLRNRNWYI  138 (159)
T ss_pred             --CCEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCCCC----C---HHHHHHHhCccccCCCCEEE
Confidence              89999999999865543321  1122221   358999999999986421    1   1222222211  11223457


Q ss_pred             EEeecCCCCChHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~  212 (219)
                      +++||++|.|++++++||.+
T Consensus       139 ~~~Sak~g~gv~~~~~~l~~  158 (159)
T cd04150         139 QATCATSGDGLYEGLDWLSN  158 (159)
T ss_pred             EEeeCCCCCCHHHHHHHHhc
Confidence            89999999999999999863

This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents

>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily

Probab=99.90  E-value=3.3e-22  Score=148.67  Aligned_cols=158  Identities=14%  Similarity=0.142  Sum_probs=103.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .+||+++|.+|+|||||++++....+.. ..++.+.+........    ...+.+|||||.          +.+..++..
T Consensus         3 ~~kv~~vG~~~~GKTsli~~~~~~~~~~-~~~t~~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~~   71 (183)
T cd04152           3 SLHIVMLGLDSAGKTTVLYRLKFNEFVN-TVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQ----------EKLRPLWKS   71 (183)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCcCC-cCCccccceeEEEeeccCCCceEEEEEECCCc----------HhHHHHHHH
Confidence            4799999999999999999999875432 2333332222212211    236889999983          344667777


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-C
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-H  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~  188 (219)
                      +++.   +|++|+|+|++++.+....     ++..+....++|+++|+||+|+...    ...++.+.+... ..... .
T Consensus        72 ~~~~---~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~~----~~~~~~~~~~~~-~~~~~~~  143 (183)
T cd04152          72 YTRC---TDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNA----LSVSEVEKLLAL-HELSAST  143 (183)
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCcccc----CCHHHHHHHhCc-cccCCCC
Confidence            7777   8999999999986544322     1122223367999999999998642    112223322221 11111 1


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..+++++||+++.|+++++++|.+.+.
T Consensus       144 ~~~~~~~SA~~~~gi~~l~~~l~~~l~  170 (183)
T cd04152         144 PWHVQPACAIIGEGLQEGLEKLYEMIL  170 (183)
T ss_pred             ceEEEEeecccCCCHHHHHHHHHHHHH
Confidence            246889999999999999999987653

Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.

>cd04177 RSR1 RSR1 subgroup

Probab=99.90  E-value=3.8e-22  Score=146.31  Aligned_cols=154  Identities=19%  Similarity=0.235  Sum_probs=106.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||++++.+..+...+.++.+.... .....+   ..+.+|||||..          .|..+...++
T Consensus         2 ~ki~liG~~~~GKTsli~~~~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~   70 (168)
T cd04177           2 YKIVVLGAGGVGKSALTVQFVQNVFIESYDPTIEDSYR-KQVEIDGRQCDLEILDTAGTE----------QFTAMRELYI   70 (168)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCCcccCCcchheEE-EEEEECCEEEEEEEEeCCCcc----------cchhhhHHHH
Confidence            68999999999999999999987665555555543322 222222   367899999843          3456777777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH-HHH----hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC-ANW----LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~----~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   ++++++|+|++++.+...... ...    ....+.|+++++||+|+....  ....++...+.+.    ++ ..+
T Consensus        71 ~~---~~~~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~~--~~~~~~~~~~~~~----~~-~~~  140 (168)
T cd04177          71 KS---GQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDR--QVSREDGVSLSQQ----WG-NVP  140 (168)
T ss_pred             hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhccccC--ccCHHHHHHHHHH----cC-Cce
Confidence            77   899999999998765544321 111    123579999999999986542  2222333333332    22 258


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||+++.|++++|+++.+.+
T Consensus       141 ~~~~SA~~~~~i~~~f~~i~~~~  163 (168)
T cd04177         141 FYETSARKRTNVDEVFIDLVRQI  163 (168)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998654

RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu

>cd04130 Wrch_1 Wrch-1 subfamily

Probab=99.90  E-value=1.6e-22  Score=149.01  Aligned_cols=153  Identities=16%  Similarity=0.142  Sum_probs=104.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+.++.+..+...+.++....... ....++   .+.+|||||.          ..|..++..++
T Consensus         1 ~k~~i~G~~~~GKtsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~~   69 (173)
T cd04130           1 LKCVLVGDGAVGKTSLIVSYTTNGYPTEYVPTAFDNFSV-VVLVDGKPVRLQLCDTAGQ----------DEFDKLRPLCY   69 (173)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeeE-EEEECCEEEEEEEEECCCC----------hhhcccccccc
Confidence            589999999999999999999876655554443211111 222332   5788999995          23344455566


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQQLI  182 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~  182 (219)
                      +.   +|++|+|+|++++.++...  ..+..+..  .+.|+++|+||+|+....          .+.+..++...+.+..
T Consensus        70 ~~---a~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~  146 (173)
T cd04130          70 PD---TDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKI  146 (173)
T ss_pred             CC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHh
Confidence            66   8999999999998776543  12222222  468999999999986532          2344444444444433


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~  211 (219)
                      +     ..+++++||++|.|++++|+.+.
T Consensus       147 ~-----~~~~~e~Sa~~~~~v~~lf~~~~  170 (173)
T cd04130         147 G-----ACEYIECSALTQKNLKEVFDTAI  170 (173)
T ss_pred             C-----CCeEEEEeCCCCCCHHHHHHHHH
Confidence            2     14899999999999999998775

Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,

>cd01889 SelB_euk SelB subfamily

Probab=99.89  E-value=3e-22  Score=149.99  Aligned_cols=158  Identities=23%  Similarity=0.243  Sum_probs=103.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcc-----cccccCCCCeeEEeeE----EE-------------ecCeEEEEeCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKE-----LALTSKKPGKTQLINH----FL-------------VNKSWYIVDLPGYGF   97 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~~~~~~t~~~~~----~~-------------~~~~~~liDtpg~~~   97 (219)
                      ++|+++|++|+|||||+++|++...     .......+++|.....    +.             .+..+.+|||||+. 
T Consensus         1 ~~i~i~G~~~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~-   79 (192)
T cd01889           1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHA-   79 (192)
T ss_pred             CeEEEEecCCCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcH-
Confidence            4799999999999999999997310     1111112233333211    11             13478999999962 


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS  177 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  177 (219)
                                  .+...++.....+|++++|+|+.++......+...+....+.|+++++||+|+......+   ...++
T Consensus        80 ------------~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~~---~~~~~  144 (192)
T cd01889          80 ------------SLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERE---RKIEK  144 (192)
T ss_pred             ------------HHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCHHHHH---HHHHH
Confidence                        344555555556899999999998765554444444444578999999999987532111   12233


Q ss_pred             HHHHHHhc----CCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          178 FQQLIREN----YPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       178 ~~~~~~~~----~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +.+.+...    .....+++++||++|.|++++++++.+.
T Consensus       145 ~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~  184 (192)
T cd01889         145 MKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNL  184 (192)
T ss_pred             HHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhc
Confidence            33322221    1234789999999999999999999764

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk

>cd04158 ARD1 ARD1 subfamily

Probab=99.89  E-value=3.2e-22  Score=146.87  Aligned_cols=154  Identities=19%  Similarity=0.163  Sum_probs=99.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      ||+++|.+|+|||||+++|.+..+ ..+.++.+...  .... .+..+.++||||..          .+...+..+++. 
T Consensus         1 ~vvlvG~~~~GKTsl~~~l~~~~~-~~~~~T~~~~~--~~~~~~~~~i~l~Dt~G~~----------~~~~~~~~~~~~-   66 (169)
T cd04158           1 RVVTLGLDGAGKTTILFKLKQDEF-MQPIPTIGFNV--ETVEYKNLKFTIWDVGGKH----------KLRPLWKHYYLN-   66 (169)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCC-CCcCCcCceeE--EEEEECCEEEEEEECCCCh----------hcchHHHHHhcc-
Confidence            689999999999999999998733 22333333222  2222 23478999999953          224456667776 


Q ss_pred             CCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          120 ESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                        +|++++|+|++++.+..+.  .+...+..   .+.|+++|+||+|+...    ...++..++.+...........+++
T Consensus        67 --ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~~~~  140 (169)
T cd04158          67 --TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGA----LSVEEMTELLSLHKLCCGRSWYIQG  140 (169)
T ss_pred             --CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCCCCEEEEEeCcCcccC----CCHHHHHHHhCCccccCCCcEEEEe
Confidence              8999999999987655332  11122211   35899999999998642    2223333322111100111236789


Q ss_pred             eecCCCCChHHHHHHHHHHH
Q 027757          195 TSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +||++|.|++++|+||.+.+
T Consensus       141 ~Sa~~g~gv~~~f~~l~~~~  160 (169)
T cd04158         141 CDARSGMGLYEGLDWLSRQL  160 (169)
T ss_pred             CcCCCCCCHHHHHHHHHHHH
Confidence            99999999999999998754

ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra

>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.89  E-value=6.8e-22  Score=143.97  Aligned_cols=152  Identities=20%  Similarity=0.296  Sum_probs=116.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ||+++|+.|+|||||+++|.+..+...+.++.+..........+.   .+.+||++|.          +.|..+...+++
T Consensus         1 Ki~vvG~~~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~~~~~~~   70 (162)
T PF00071_consen    1 KIVVVGDSGVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSIDGKPVNLEIWDTSGQ----------ERFDSLRDIFYR   70 (162)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEETTEEEEEEEEEETTS----------GGGHHHHHHHHT
T ss_pred             CEEEECCCCCCHHHHHHHHHhhcccccccccccccccccccccccccccccccccccc----------cccccccccccc
Confidence            799999999999999999999877777777766555544444433   5889999873          455667778887


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .   +|++|+++|++++.+.....  .|+..      .+.|+++++||+|+...  +++..++.+++.+.++      .+
T Consensus        71 ~---~~~~ii~fd~~~~~S~~~~~--~~~~~i~~~~~~~~~iivvg~K~D~~~~--~~v~~~~~~~~~~~~~------~~  137 (162)
T PF00071_consen   71 N---SDAIIIVFDVTDEESFENLK--KWLEEIQKYKPEDIPIIVVGNKSDLSDE--REVSVEEAQEFAKELG------VP  137 (162)
T ss_dssp             T---ESEEEEEEETTBHHHHHTHH--HHHHHHHHHSTTTSEEEEEEETTTGGGG--SSSCHHHHHHHHHHTT------SE
T ss_pred             c---cccccccccccccccccccc--cccccccccccccccceeeecccccccc--ccchhhHHHHHHHHhC------CE
Confidence            7   89999999999987766543  44442      36899999999998873  4455556666665543      69


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||+++.|+.++|..+.+...
T Consensus       138 ~~e~Sa~~~~~v~~~f~~~i~~i~  161 (162)
T PF00071_consen  138 YFEVSAKNGENVKEIFQELIRKIL  161 (162)
T ss_dssp             EEEEBTTTTTTHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999887653

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....

>cd04139 RalA_RalB RalA/RalB subfamily

Probab=99.89  E-value=1.1e-21  Score=142.85  Aligned_cols=154  Identities=18%  Similarity=0.238  Sum_probs=104.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++++...+.....+........ ....+   ..+.++||||.          ..+..+...++
T Consensus         1 ~ki~~~G~~~~GKTsl~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~D~~g~----------~~~~~~~~~~~   69 (164)
T cd04139           1 YKVIVVGAGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEDVQLNILDTAGQ----------EDYAAIRDNYH   69 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCccccCCcchhhEEE-EEEECCEEEEEEEEECCCh----------hhhhHHHHHHh
Confidence            489999999999999999999875544444333222211 12222   25888999984          33456667777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH-HHH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL-DCA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|+.++.+.... ... .+..   ..++|+++|+||+|+.+.  ..........+.+.++      .+
T Consensus        70 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~~--~~~~~~~~~~~~~~~~------~~  138 (164)
T cd04139          70 RS---GEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDK--RQVSSEEAANLARQWG------VP  138 (164)
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEccccccc--cccCHHHHHHHHHHhC------Ce
Confidence            77   8999999999876554322 111 1121   257999999999998752  1122233333333322      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||+++.|++++++++.+.+.
T Consensus       139 ~~~~Sa~~~~gi~~l~~~l~~~~~  162 (164)
T cd04139         139 YVETSAKTRQNVEKAFYDLVREIR  162 (164)
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999987654

The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo

>TIGR02729 Obg_CgtA Obg family GTPase CgtA

Probab=99.89  E-value=1.9e-21  Score=156.10  Aligned_cols=188  Identities=25%  Similarity=0.322  Sum_probs=124.1

Q ss_pred             cccccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCee
Q 027757           10 VGPYAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT   75 (219)
Q Consensus        10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t   75 (219)
                      +....+.....|..|..+..+.+.....+              ...|+|+|.+|||||||+|+|++..  +.+.+.+.+|
T Consensus       114 ~~a~gg~gg~gn~~f~~~~~~~p~~~~~g~~g~~~~~~lelk~~adV~lvG~pnaGKSTLl~~lt~~~--~~va~y~fTT  191 (329)
T TIGR02729       114 VVAKGGRGGLGNAHFKSSTNRAPRFATPGEPGEERWLRLELKLLADVGLVGLPNAGKSTLISAVSAAK--PKIADYPFTT  191 (329)
T ss_pred             EecCCCCCCCCcccccCccCCCCcccCCCCCCcEEEEEEEeeccccEEEEcCCCCCHHHHHHHHhcCC--ccccCCCCCc
Confidence            33466777777877877666555433222              3689999999999999999999863  4566666666


Q ss_pred             EEeeEEE--ec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC---CCcccHH-HHHHhc
Q 027757           76 QLINHFL--VN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP---PQKIDLD-CANWLG  147 (219)
Q Consensus        76 ~~~~~~~--~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~---~~~~~~~-~~~~~~  147 (219)
                      ..+....  .+  ..+.++|+||+.......      ..+...|++..+.+|++++|+|+++.   ....+.. ..+.+.
T Consensus       192 ~~p~ig~v~~~~~~~~~i~D~PGli~~a~~~------~gLg~~flrhierad~ll~VvD~s~~~~~~~~e~l~~l~~EL~  265 (329)
T TIGR02729       192 LVPNLGVVRVDDGRSFVIADIPGLIEGASEG------AGLGHRFLKHIERTRVLLHLIDISPLDGRDPIEDYEIIRNELK  265 (329)
T ss_pred             cCCEEEEEEeCCceEEEEEeCCCcccCCccc------ccHHHHHHHHHHhhCEEEEEEcCccccccCHHHHHHHHHHHHH
Confidence            6543322  22  479999999975322111      12333444444558999999999975   2222221 222222


Q ss_pred             c-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          148 R-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       148 ~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .     .++|+++|+||+|+....       ..+++.+.+...++  .+++++||+++.|+++++++|.+.+
T Consensus       266 ~~~~~l~~kp~IIV~NK~DL~~~~-------~~~~~~~~l~~~~~--~~vi~iSAktg~GI~eL~~~I~~~l  328 (329)
T TIGR02729       266 KYSPELAEKPRIVVLNKIDLLDEE-------ELAELLKELKKALG--KPVFPISALTGEGLDELLYALAELL  328 (329)
T ss_pred             HhhhhhccCCEEEEEeCccCCChH-------HHHHHHHHHHHHcC--CcEEEEEccCCcCHHHHHHHHHHHh
Confidence            2     468999999999987541       23344444443332  5799999999999999999998765

This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.

>cd04114 Rab30 Rab30 subfamily

Probab=99.89  E-value=1.3e-21  Score=143.42  Aligned_cols=155  Identities=15%  Similarity=0.150  Sum_probs=103.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||++++.+..+.....++.+.......+...+   .+.++|+||.          ..|+.....
T Consensus         6 ~~~~v~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~D~~g~----------~~~~~~~~~   75 (169)
T cd04114           6 FLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQ----------ERFRSITQS   75 (169)
T ss_pred             ceeEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHHH
Confidence            358999999999999999999997644444444443333222233332   4678999984          234556666


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHH----HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDC----ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~----~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++..   +|++++|+|++++.+......    +.++...+.|+++|+||+|+....  ....+..+    .+.....  .
T Consensus        76 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~~~--~i~~~~~~----~~~~~~~--~  144 (169)
T cd04114          76 YYRS---ANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERR--EVSQQRAE----EFSDAQD--M  144 (169)
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccccc--ccCHHHHH----HHHHHcC--C
Confidence            7766   899999999987655432211    122233579999999999986532  12222222    2222222  5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +++++||++|.|++++++++.+.
T Consensus       145 ~~~~~Sa~~~~gv~~l~~~i~~~  167 (169)
T cd04114         145 YYLETSAKESDNVEKLFLDLACR  167 (169)
T ss_pred             eEEEeeCCCCCCHHHHHHHHHHH
Confidence            79999999999999999999875

Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.

>cd04135 Tc10 TC10 subfamily

Probab=99.89  E-value=2.8e-22  Score=147.72  Aligned_cols=156  Identities=14%  Similarity=0.062  Sum_probs=103.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|.+..+...+.++....... ....++   .+.+|||||...          |..+...++
T Consensus         1 ~ki~i~G~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~   69 (174)
T cd04135           1 LKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQED----------YDRLRPLSY   69 (174)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEE-EEEECCEEEEEEEEeCCCccc----------ccccccccC
Confidence            489999999999999999999886555554444322221 222333   467899999532          223344555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQLI  182 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~~  182 (219)
                      +.   +|++++|+|+.++.++....  ....+.  ..+.|+++|+||+|+.+...          ..+..++...+.+.+
T Consensus        70 ~~---~~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  146 (174)
T cd04135          70 PM---TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEI  146 (174)
T ss_pred             CC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHc
Confidence            55   89999999999887755432  222222  36899999999999865321          122223333333322


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +    . .+++++||++|.|++++|+.+.+.+
T Consensus       147 ~----~-~~~~e~Sa~~~~gi~~~f~~~~~~~  173 (174)
T cd04135         147 G----A-HCYVECSALTQKGLKTVFDEAILAI  173 (174)
T ss_pred             C----C-CEEEEecCCcCCCHHHHHHHHHHHh
Confidence            2    1 3689999999999999999987753

TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti

>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes

Probab=99.89  E-value=1.6e-21  Score=140.90  Aligned_cols=152  Identities=26%  Similarity=0.301  Sum_probs=106.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|++|+|||||++++++. ..+...+.++++.....  ... +.++.++||||+...... ..+..++... ..+
T Consensus         2 ~~i~l~G~~~~GKstli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~-~~~~~~~~~~-~~~   78 (157)
T cd04164           2 IKVVIVGKPNVGKSSLLNALAGR-DRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDE-IEKIGIERAR-EAI   78 (157)
T ss_pred             cEEEEECCCCCCHHHHHHHHHCC-ceEeccCCCCCccceEEEEEEeCCEEEEEEECCCcCCCcch-HHHHHHHHHH-HHH
Confidence            48999999999999999999997 35555666666654322  222 347899999997543221 1111111222 223


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      .   .+|++++|+|++++.+..+......  ..+.|+++|+||+|+.+....               .......+++++|
T Consensus        79 ~---~~~~~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~~~---------------~~~~~~~~~~~~S  138 (157)
T cd04164          79 E---EADLVLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDSEL---------------LSLLAGKPIIAIS  138 (157)
T ss_pred             h---hCCEEEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcccc---------------ccccCCCceEEEE
Confidence            3   3799999999998777766544443  568999999999999764211               1122236899999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~  214 (219)
                      |+++.|+++++++|.+.+
T Consensus       139 a~~~~~v~~l~~~l~~~~  156 (157)
T cd04164         139 AKTGEGLDELKEALLELA  156 (157)
T ss_pred             CCCCCCHHHHHHHHHHhh
Confidence            999999999999998765

It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.

>cd04156 ARLTS1 ARLTS1 subfamily

Probab=99.89  E-value=3.3e-22  Score=145.36  Aligned_cols=151  Identities=19%  Similarity=0.201  Sum_probs=98.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      +|+++|++|+|||||+++|++..+. ...++.+.+...........+.++||||..          .+...+..++..  
T Consensus         1 ~i~i~G~~~~GKTsl~~~~~~~~~~-~~~~t~~~~~~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~~--   67 (160)
T cd04156           1 QVLLLGLDSAGKSTLLYKLKHAELV-TTIPTVGFNVEMLQLEKHLSLTVWDVGGQE----------KMRTVWKCYLEN--   67 (160)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCCcc-cccCccCcceEEEEeCCceEEEEEECCCCH----------hHHHHHHHHhcc--
Confidence            5899999999999999999998543 333444332221111123478999999842          345556667766  


Q ss_pred             CccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--hcC-CCCCCe
Q 027757          121 SLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR--ENY-PHHPPW  192 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~  192 (219)
                       +|++|+|+|++++.+....  .+...+..   .+.|+++|+||+|+....       ..++....+.  ... ....++
T Consensus        68 -~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~~  139 (160)
T cd04156          68 -TDGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGAL-------TAEEITRRFKLKKYCSDRDWYV  139 (160)
T ss_pred             -CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcCCCEEEEEECcccccCc-------CHHHHHHHcCCcccCCCCcEEE
Confidence             8999999999987643332  12222221   579999999999986421       1122222221  111 123468


Q ss_pred             EEeecCCCCChHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~  212 (219)
                      +++||++|.|+++++++|.+
T Consensus       140 ~~~Sa~~~~gv~~~~~~i~~  159 (160)
T cd04156         140 QPCSAVTGEGLAEAFRKLAS  159 (160)
T ss_pred             EecccccCCChHHHHHHHhc
Confidence            99999999999999999864

ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h

>KOG0093 consensus GTPase Rab3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.89  E-value=3.9e-22  Score=136.71  Aligned_cols=155  Identities=15%  Similarity=0.225  Sum_probs=121.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      -+|++|+|+..+|||||+-+.++..+....-++.|.......+....   ++.+|||.          +++.|+.+.-.|
T Consensus        21 mfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTa----------gqEryrtiTTay   90 (193)
T KOG0093|consen   21 MFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTA----------GQERYRTITTAY   90 (193)
T ss_pred             eeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecc----------cchhhhHHHHHH
Confidence            46999999999999999999999877776666666554433222221   34555554          577899999999


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +|+   ++++|+++|+++..++...  ..|..      ..+.|+++|+||||+.++  +.+..+....+.++++      
T Consensus        91 yRg---amgfiLmyDitNeeSf~sv--qdw~tqIktysw~naqvilvgnKCDmd~e--Rvis~e~g~~l~~~LG------  157 (193)
T KOG0093|consen   91 YRG---AMGFILMYDITNEESFNSV--QDWITQIKTYSWDNAQVILVGNKCDMDSE--RVISHERGRQLADQLG------  157 (193)
T ss_pred             hhc---cceEEEEEecCCHHHHHHH--HHHHHHheeeeccCceEEEEecccCCccc--eeeeHHHHHHHHHHhC------
Confidence            999   9999999999998776543  33443      378999999999999875  6677788888888877      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ..+|++||+.+.|++++|+.+.....+
T Consensus       158 fefFEtSaK~NinVk~~Fe~lv~~Ic~  184 (193)
T KOG0093|consen  158 FEFFETSAKENINVKQVFERLVDIICD  184 (193)
T ss_pred             hHHhhhcccccccHHHHHHHHHHHHHH
Confidence            489999999999999999998776544

>cd01898 Obg Obg subfamily

Probab=99.89  E-value=3.4e-22  Score=146.61  Aligned_cols=157  Identities=23%  Similarity=0.272  Sum_probs=99.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecC-eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNK-SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +|+++|.+|+|||||+|+|.+..  ......++++...  .... .+. .+.++||||+.......      +.+...++
T Consensus         2 ~v~ivG~~~~GKStl~~~l~~~~--~~v~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~------~~~~~~~~   73 (170)
T cd01898           2 DVGLVGLPNAGKSTLLSAISNAK--PKIADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEG------KGLGHRFL   73 (170)
T ss_pred             CeEEECCCCCCHHHHHHHHhcCC--ccccCCCccccCCcceEEEcCCCCeEEEEecCcccCccccc------CCchHHHH
Confidence            58999999999999999999863  2333344444332  2222 233 78999999974221110      11223333


Q ss_pred             hccCCccEEEEEEeCCCC-CCcccHH-HHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          117 LNRESLVGVLLLIDASVP-PQKIDLD-CANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~-~~~~~~~-~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +....+|++++|+|++++ .+..... ..+.+..     .++|+++|+||+|+.+..       ...+....+.... ..
T Consensus        74 ~~~~~~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~-------~~~~~~~~~~~~~-~~  145 (170)
T cd01898          74 RHIERTRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE-------ELFELLKELLKEL-WG  145 (170)
T ss_pred             HHHHhCCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch-------hhHHHHHHHHhhC-CC
Confidence            433448999999999987 4443321 2222221     368999999999986542       1222222222211 13


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .+++++||+++.|++++++++.++
T Consensus       146 ~~~~~~Sa~~~~gi~~l~~~i~~~  169 (170)
T cd01898         146 KPVFPISALTGEGLDELLRKLAEL  169 (170)
T ss_pred             CCEEEEecCCCCCHHHHHHHHHhh
Confidence            679999999999999999999865

The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.

>cd04143 Rhes_like Rhes_like subfamily

Probab=99.89  E-value=5.6e-22  Score=153.53  Aligned_cols=155  Identities=12%  Similarity=0.145  Sum_probs=106.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+++|++..+...+.++.+... ...+..++   .+.+|||+|..          .|..+...++
T Consensus         1 ~KVvvlG~~gvGKTSLi~r~~~~~f~~~y~pTi~d~~-~k~~~i~~~~~~l~I~Dt~G~~----------~~~~~~~~~~   69 (247)
T cd04143           1 YRMVVLGASKVGKTAIVSRFLGGRFEEQYTPTIEDFH-RKLYSIRGEVYQLDILDTSGNH----------PFPAMRRLSI   69 (247)
T ss_pred             CEEEEECcCCCCHHHHHHHHHcCCCCCCCCCChhHhE-EEEEEECCEEEEEEEEECCCCh----------hhhHHHHHHh
Confidence            4899999999999999999998766555555544222 22233333   57799999842          2345566666


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhc------------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG------------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      ..   +|++|+|+|+++..++.... ...++.            ..++|+++|+||+|+...  +++..+++.++.   .
T Consensus        70 ~~---ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~--~~v~~~ei~~~~---~  141 (247)
T cd04143          70 LT---GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFP--REVQRDEVEQLV---G  141 (247)
T ss_pred             cc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhc--cccCHHHHHHHH---H
Confidence            66   89999999999877665432 222221            147899999999998753  223333333332   2


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..  ..+.++++||+++.|++++|++|.+.+.
T Consensus       142 ~~--~~~~~~evSAktg~gI~elf~~L~~~~~  171 (247)
T cd04143         142 GD--ENCAYFEVSAKKNSNLDEMFRALFSLAK  171 (247)
T ss_pred             hc--CCCEEEEEeCCCCCCHHHHHHHHHHHhc
Confidence            21  1367999999999999999999988653

This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l

>cd04171 SelB SelB subfamily

Probab=99.89  E-value=1.5e-21  Score=142.22  Aligned_cols=155  Identities=22%  Similarity=0.178  Sum_probs=96.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccccccc--CCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTS--KKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~--~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .|+++|++|+|||||+++|++.. .....  ..++++....  ....  +..+.+|||||..          .|......
T Consensus         2 ~i~i~G~~~~GKssl~~~l~~~~-~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~----------~~~~~~~~   70 (164)
T cd04171           2 IIGTAGHIDHGKTTLIKALTGIE-TDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHE----------KFIKNMLA   70 (164)
T ss_pred             EEEEEecCCCCHHHHHHHHhCcc-cccchhhhccCceEEeeeEEEEecCCcEEEEEECCChH----------HHHHHHHh
Confidence            58999999999999999999752 11111  1223333322  1222  4578999999952          22222233


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI  193 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (219)
                      ++..   +|++++|+|+++.........+..+...+. |+++|+||+|+......   ....+++.+.+........+++
T Consensus        71 ~~~~---ad~ii~V~d~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~  144 (164)
T cd04171          71 GAGG---IDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWL---ELVEEEIRELLAGTFLADAPIF  144 (164)
T ss_pred             hhhc---CCEEEEEEECCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCHHHH---HHHHHHHHHHHHhcCcCCCcEE
Confidence            3444   899999999987443333333333433344 99999999998753110   1112333333332211346899


Q ss_pred             EeecCCCCChHHHHHHHHH
Q 027757          194 MTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~  212 (219)
                      ++||+++.|++++++++.+
T Consensus       145 ~~Sa~~~~~v~~l~~~l~~  163 (164)
T cd04171         145 PVSAVTGEGIEELKEYLDE  163 (164)
T ss_pred             EEeCCCCcCHHHHHHHHhh
Confidence            9999999999999998864

SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo

>KOG0080 consensus GTPase Rab18, small G protein superfamily [General function prediction only]

Probab=99.89  E-value=1.7e-22  Score=140.48  Aligned_cols=153  Identities=22%  Similarity=0.244  Sum_probs=122.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|.+|+|||||+-+|+...+......+.|.........+++   ++.+|||.|          |++|+.+...
T Consensus        10 ~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAG----------qErFRtLTpS   79 (209)
T KOG0080|consen   10 TTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAG----------QERFRTLTPS   79 (209)
T ss_pred             eeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccc----------hHhhhccCHh
Confidence            358999999999999999999999876666666677766655555443   566777755          8889999999


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ||++   +.++|+|+|++..+++..+  --|+++       .++-.++|+||+|...  .+.+..++-..+.+..+    
T Consensus        80 yyRg---aqGiIlVYDVT~Rdtf~kL--d~W~~Eld~Ystn~diikmlVgNKiDkes--~R~V~reEG~kfAr~h~----  148 (209)
T KOG0080|consen   80 YYRG---AQGIILVYDVTSRDTFVKL--DIWLKELDLYSTNPDIIKMLVGNKIDKES--ERVVDREEGLKFARKHR----  148 (209)
T ss_pred             Hhcc---CceeEEEEEccchhhHHhH--HHHHHHHHhhcCCccHhHhhhcccccchh--cccccHHHHHHHHHhhC----
Confidence            9999   8889999999998887654  445554       6677899999999765  36677777777777655    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                        +-++++||++..|+...|+.+.+.
T Consensus       149 --~LFiE~SAkt~~~V~~~FeelveK  172 (209)
T KOG0080|consen  149 --CLFIECSAKTRENVQCCFEELVEK  172 (209)
T ss_pred             --cEEEEcchhhhccHHHHHHHHHHH
Confidence              678999999999999999988764

>cd01870 RhoA_like RhoA-like subfamily

Probab=99.89  E-value=4.6e-22  Score=146.73  Aligned_cols=157  Identities=14%  Similarity=0.141  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +.||+++|++|+|||||+++|.+..+...+.++.+..... ....+   ..+.+|||||..          .|..+...+
T Consensus         1 ~~ki~iiG~~~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~   69 (175)
T cd01870           1 RKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGQE----------DYDRLRPLS   69 (175)
T ss_pred             CcEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccccceEE-EEEECCEEEEEEEEeCCCch----------hhhhccccc
Confidence            4689999999999999999999976555555554433221 22222   257899999952          223333444


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccccC----------CCchHhHHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAKG----------RRPDENIKSFQQL  181 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~~----------~~~~~~~~~~~~~  181 (219)
                      +..   +|++++|+|+++..+.....  ....+..  .+.|+++|+||+|+......          .+...+..++.+.
T Consensus        70 ~~~---~d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~  146 (175)
T cd01870          70 YPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANK  146 (175)
T ss_pred             cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHH
Confidence            444   89999999999876544321  1111222  47899999999998653211          1111222222222


Q ss_pred             HHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       182 ~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                          .+ ..+++++||++|.|++++|+++.+.+
T Consensus       147 ----~~-~~~~~~~Sa~~~~~v~~lf~~l~~~~  174 (175)
T cd01870         147 ----IG-AFGYMECSAKTKEGVREVFEMATRAA  174 (175)
T ss_pred             ----cC-CcEEEEeccccCcCHHHHHHHHHHHh
Confidence                11 24799999999999999999998764

The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl

>cd04103 Centaurin_gamma Centaurin gamma

Probab=99.89  E-value=8.1e-22  Score=143.11  Aligned_cols=149  Identities=17%  Similarity=0.168  Sum_probs=101.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|+.|+|||||+.+++...+.....+..+ .. ......++   .+.+|||+|-..               ..++
T Consensus         1 ~ki~vvG~~gvGKTsli~~~~~~~f~~~~~~~~~-~~-~~~i~~~~~~~~l~i~D~~g~~~---------------~~~~   63 (158)
T cd04103           1 LKLGIVGNLQSGKSALVHRYLTGSYVQLESPEGG-RF-KKEVLVDGQSHLLLIRDEGGAPD---------------AQFA   63 (158)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhCCCCCCCCCCcc-ce-EEEEEECCEEEEEEEEECCCCCc---------------hhHH
Confidence            4899999999999999999987755544433322 11 12223333   478899998531               1234


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|+++..++.... .+..+..    .+.|+++|+||+|+.....+++..++.+++.+...     .++
T Consensus        64 ~~---~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~-----~~~  135 (158)
T cd04103          64 SW---VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMK-----RCS  135 (158)
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhC-----CCc
Confidence            44   89999999999988877632 2222221    46899999999998643334455555555544322     268


Q ss_pred             eEEeecCCCCChHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ++++||+++.|++++|+.+.+.
T Consensus       136 ~~e~SAk~~~~i~~~f~~~~~~  157 (158)
T cd04103         136 YYETCATYGLNVERVFQEAAQK  157 (158)
T ss_pred             EEEEecCCCCCHHHHHHHHHhh
Confidence            9999999999999999988753

The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.

>cd01893 Miro1 Miro1 subfamily

Probab=99.89  E-value=8.2e-22  Score=144.28  Aligned_cols=158  Identities=16%  Similarity=0.078  Sum_probs=100.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-eeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPG-KTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      .||+++|.+|+|||||+++|.+..+...+..... .+........+..+.+|||||...          +...+..++..
T Consensus         1 ~kv~ivG~~~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~~~   70 (166)
T cd01893           1 VRIVLIGDEGVGKSSLIMSLVSEEFPENVPRVLPEITIPADVTPERVPTTIVDTSSRPQ----------DRANLAAEIRK   70 (166)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCcCCccCCCcccceEeeeeecCCeEEEEEEeCCCchh----------hhHHHhhhccc
Confidence            3899999999999999999999765443222111 111111111233688999999531          12233444444


Q ss_pred             cCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          119 RESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                         +|++++|+|++++.+.....  ....+.  ..+.|+++|+||+|+.+........+....+...+.    ...++++
T Consensus        71 ---ad~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----~~~~~~e  143 (166)
T cd01893          71 ---ANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFR----EIETCVE  143 (166)
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccccchhHHHHHHHHHHHHHh----cccEEEE
Confidence               89999999999877765421  112122  247899999999999764321111122222222222    1137999


Q ss_pred             eecCCCCChHHHHHHHHHHH
Q 027757          195 TSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +||+++.|++++|+.+.+.+
T Consensus       144 ~Sa~~~~~v~~lf~~~~~~~  163 (166)
T cd01893         144 CSAKTLINVSEVFYYAQKAV  163 (166)
T ss_pred             eccccccCHHHHHHHHHHHh
Confidence            99999999999999988764

Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.

>PRK03003 GTP-binding protein Der; Reviewed

Probab=99.89  E-value=1.2e-21  Score=165.16  Aligned_cols=160  Identities=22%  Similarity=0.254  Sum_probs=116.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|++.....   .+..+.+|||||+....  ..-...+......
T Consensus        37 ~~~~V~IvG~~nvGKSSL~nrl~~~-~~~~v~~~~gvT~d~~~~~~~~~~~~~~l~DT~G~~~~~--~~~~~~~~~~~~~  113 (472)
T PRK03003         37 PLPVVAVVGRPNVGKSTLVNRILGR-REAVVEDVPGVTRDRVSYDAEWNGRRFTVVDTGGWEPDA--KGLQASVAEQAEV  113 (472)
T ss_pred             CCCEEEEEcCCCCCHHHHHHHHhCc-CcccccCCCCCCEeeEEEEEEECCcEEEEEeCCCcCCcc--hhHHHHHHHHHHH
Confidence            3589999999999999999999997 4566677888877644332   24478999999975211  1122233444455


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      ++..   +|++|+|+|++++.+..+..+..++...++|+++|+||+|+....      .+..++   ....++   ..++
T Consensus       114 ~~~~---aD~il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~~~------~~~~~~---~~~g~~---~~~~  178 (472)
T PRK03003        114 AMRT---ADAVLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDERGE------ADAAAL---WSLGLG---EPHP  178 (472)
T ss_pred             HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCccc------hhhHHH---HhcCCC---CeEE
Confidence            6666   899999999999888777778888888899999999999986421      111111   111111   3479


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027757          195 TSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +||++|.|++++++++.+.+.
T Consensus       179 iSA~~g~gi~eL~~~i~~~l~  199 (472)
T PRK03003        179 VSALHGRGVGDLLDAVLAALP  199 (472)
T ss_pred             EEcCCCCCcHHHHHHHHhhcc
Confidence            999999999999999987653

>cd04148 RGK RGK subfamily

Probab=99.89  E-value=1.4e-21  Score=149.31  Aligned_cols=153  Identities=15%  Similarity=0.089  Sum_probs=101.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccc-ccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKEL-ALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~-~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +||+++|++|+|||||+++|++..+. ..+.++.+..........   ...+.+|||||..            ......+
T Consensus         1 ~KI~lvG~~gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~~------------~~~~~~~   68 (221)
T cd04148           1 YRVVMLGSPGVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQE------------MWTEDSC   68 (221)
T ss_pred             CEEEEECCCCCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEECCEEEEEEEEeCCCcc------------hHHHhHH
Confidence            58999999999999999999876444 334444332222222222   3368899999963            1122333


Q ss_pred             hh-ccCCccEEEEEEeCCCCCCcccH-HHHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FL-NRESLVGVLLLIDASVPPQKIDL-DCANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~-~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +. .   +|++++|+|++++.++... ..+..+..    .+.|+++|+||+|+....  .+..++...+...    +  .
T Consensus        69 ~~~~---ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~~--~v~~~~~~~~a~~----~--~  137 (221)
T cd04148          69 MQYQ---GDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSR--EVSVQEGRACAVV----F--D  137 (221)
T ss_pred             hhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhccccc--eecHHHHHHHHHH----c--C
Confidence            33 4   8999999999997665432 12222222    578999999999987542  2222333333222    2  2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++++||+++.|++++++++.+.+.
T Consensus       138 ~~~~e~SA~~~~gv~~l~~~l~~~~~  163 (221)
T cd04148         138 CKFIETSAGLQHNVDELLEGIVRQIR  163 (221)
T ss_pred             CeEEEecCCCCCCHHHHHHHHHHHHH
Confidence            57999999999999999999988765

The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra

>cd04147 Ras_dva Ras-dva subfamily

Probab=99.89  E-value=9e-22  Score=148.14  Aligned_cols=155  Identities=15%  Similarity=0.172  Sum_probs=102.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ||+++|.+|+|||||+++|++..+...+.++....... .+..++   .+.++|+||..          .|..+...++.
T Consensus         1 kv~vvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~G~~----------~~~~~~~~~~~   69 (198)
T cd04147           1 RLVFMGAAGVGKTALIQRFLYDTFEPKYRRTVEEMHRK-EYEVGGVSLTLDILDTSGSY----------SFPAMRKLSIQ   69 (198)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCccCCCchhhheeE-EEEECCEEEEEEEEECCCch----------hhhHHHHHHhh
Confidence            68999999999999999999876554444443322222 222223   67899999842          23445566666


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      .   +|++|+|+|++++.+.....     +.......++|+++|+||+|+.... ..+..+...+.   ...  ....++
T Consensus        70 ~---ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~-~~v~~~~~~~~---~~~--~~~~~~  140 (198)
T cd04147          70 N---SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEE-RQVPAKDALST---VEL--DWNCGF  140 (198)
T ss_pred             c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEcccccccc-ccccHHHHHHH---HHh--hcCCcE
Confidence            6   89999999999876654331     1122223579999999999986531 11212222211   111  112578


Q ss_pred             EEeecCCCCChHHHHHHHHHHHh
Q 027757          193 IMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++||++|.|++++++++.+.+.
T Consensus       141 ~~~Sa~~g~gv~~l~~~l~~~~~  163 (198)
T cd04147         141 VETSAKDNENVLEVFKELLRQAN  163 (198)
T ss_pred             EEecCCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999987653

Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.

>cd01890 LepA LepA subfamily

Probab=99.88  E-value=1.6e-21  Score=144.38  Aligned_cols=154  Identities=23%  Similarity=0.260  Sum_probs=101.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-------ccccccC------CCCeeEEeeEEE--------ecCeEEEEeCCCCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKK-------ELALTSK------KPGKTQLINHFL--------VNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~-------~~~~~~~------~~~~t~~~~~~~--------~~~~~~liDtpg~~~~~   99 (219)
                      +|+++|.+|+|||||+++|++..       +...+.+      ..+.+.......        .+..+.+|||||..   
T Consensus         2 ni~~vG~~~~GKssL~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~---   78 (179)
T cd01890           2 NFSIIAHIDHGKSTLADRLLELTGTVSKREMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHV---   78 (179)
T ss_pred             cEEEEeecCCCHHHHHHHHHHHhCCCCcCCCceEeccCChhHHHCCCeEecceEEEEEecCCCCcEEEEEEECCCCh---
Confidence            68999999999999999999742       1111111      123333221111        12257899999963   


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                             .|......+++.   +|++|+|+|++++.+..+...+..+...++|+++|+||+|+....    .....+++.
T Consensus        79 -------~~~~~~~~~~~~---ad~~i~v~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~----~~~~~~~~~  144 (179)
T cd01890          79 -------DFSYEVSRSLAA---CEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSAD----PERVKQQIE  144 (179)
T ss_pred             -------hhHHHHHHHHHh---cCeEEEEEECCCCccHhhHHHHHHHHHcCCCEEEEEECCCCCcCC----HHHHHHHHH
Confidence                   234556667776   899999999998776665554555555789999999999986421    111122333


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.++  . ...+++++||++|.|++++++++.+.+
T Consensus       145 ~~~~--~-~~~~~~~~Sa~~g~gi~~l~~~l~~~~  176 (179)
T cd01890         145 DVLG--L-DPSEAILVSAKTGLGVEDLLEAIVERI  176 (179)
T ss_pred             HHhC--C-CcccEEEeeccCCCCHHHHHHHHHhhC
Confidence            3222  1 123589999999999999999998753

LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.

>cd00154 Rab Rab family

Probab=99.88  E-value=1.5e-21  Score=141.02  Aligned_cols=151  Identities=24%  Similarity=0.260  Sum_probs=105.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||++++.+........++.+.+........   ...+.++|+||.          ..+......++
T Consensus         1 ~~i~~~G~~~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~D~~g~----------~~~~~~~~~~~   70 (159)
T cd00154           1 FKIVLIGDSGVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQ----------ERFRSITPSYY   70 (159)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEECCEEEEEEEEecCCh----------HHHHHHHHHHh
Confidence            58999999999999999999998554444555555554443432   246889999994          33455666776


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      ..   +|++++|+|++++.+..... ....+..   ...|+++++||+|+...  .....++..++...      ...++
T Consensus        71 ~~---~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~------~~~~~  139 (159)
T cd00154          71 RG---AHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQ--RQVSTEEAQQFAKE------NGLLF  139 (159)
T ss_pred             cC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccccc--ccccHHHHHHHHHH------cCCeE
Confidence            66   89999999999855433321 2222222   45999999999999622  11223334443332      23689


Q ss_pred             EEeecCCCCChHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~  211 (219)
                      +++|++++.|+++++++|.
T Consensus       140 ~~~sa~~~~~i~~~~~~i~  158 (159)
T cd00154         140 FETSAKTGENVEELFQSLA  158 (159)
T ss_pred             EEEecCCCCCHHHHHHHHh
Confidence            9999999999999999885

Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.88  E-value=2.7e-21  Score=169.95  Aligned_cols=170  Identities=25%  Similarity=0.313  Sum_probs=121.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--E-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--F-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+|+|++. ......+.+++|.+...  + ..+..+.++||||+........+.+.|..+..
T Consensus       448 ~~~~kI~ivG~~nvGKSSLin~l~~~-~~~~v~~~~gtT~d~~~~~~~~~~~~~~liDTaG~~~~~~~~~~~e~~~~~r~  526 (712)
T PRK09518        448 SGLRRVALVGRPNVGKSSLLNQLTHE-ERAVVNDLAGTTRDPVDEIVEIDGEDWLFIDTAGIKRRQHKLTGAEYYSSLRT  526 (712)
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHhCc-cccccCCCCCCCcCcceeEEEECCCEEEEEECCCcccCcccchhHHHHHHHHH
Confidence            34689999999999999999999997 34455667777765422  2 23447889999997543333334444443322


Q ss_pred             -HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCC
Q 027757          114 -GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHP  190 (219)
Q Consensus       114 -~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  190 (219)
                       .+++.   +|++++|+|++++.+..+......+...++|+++|+||+|+.+..       ..+.+.+.+...+  ....
T Consensus       527 ~~~i~~---advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~~-------~~~~~~~~~~~~l~~~~~~  596 (712)
T PRK09518        527 QAAIER---SELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDEF-------RRQRLERLWKTEFDRVTWA  596 (712)
T ss_pred             HHHhhc---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCChh-------HHHHHHHHHHHhccCCCCC
Confidence             23444   899999999999988888777777777789999999999997531       1222333332221  2235


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++++||++|.|++++++.+.+....+
T Consensus       597 ~ii~iSAktg~gv~~L~~~i~~~~~~~  623 (712)
T PRK09518        597 RRVNLSAKTGWHTNRLAPAMQEALESW  623 (712)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            789999999999999999999887654

>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases

Probab=99.88  E-value=9.8e-22  Score=142.59  Aligned_cols=150  Identities=21%  Similarity=0.220  Sum_probs=102.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      ||+++|.+|+|||||++++++.. .....++.+.+..... ..+..+.+||+||..          .+...+..++..  
T Consensus         1 ki~iiG~~~~GKssli~~~~~~~-~~~~~~t~~~~~~~~~-~~~~~~~i~D~~G~~----------~~~~~~~~~~~~--   66 (158)
T cd00878           1 RILILGLDGAGKTTILYKLKLGE-VVTTIPTIGFNVETVE-YKNVSFTVWDVGGQD----------KIRPLWKHYYEN--   66 (158)
T ss_pred             CEEEEcCCCCCHHHHHHHHhcCC-CCCCCCCcCcceEEEE-ECCEEEEEEECCCCh----------hhHHHHHHHhcc--
Confidence            68999999999999999999984 4444444443332211 123478999999943          335566677766  


Q ss_pred             CccEEEEEEeCCCCCCcccH-HHH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCCCCeE
Q 027757          121 SLVGVLLLIDASVPPQKIDL-DCA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHPPWI  193 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~-~~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  193 (219)
                       +|++++|+|++++.+.... ..+ ....   ..+.|+++|+||+|+....       ..++..+.+...  .....+++
T Consensus        67 -~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~  138 (158)
T cd00878          67 -TNGIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGAL-------SVSELIEKLGLEKILGRRWHIQ  138 (158)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEeeccCCcccc-------CHHHHHHhhChhhccCCcEEEE
Confidence             8999999999987544332 111 1111   3579999999999987542       223333333321  22346899


Q ss_pred             EeecCCCCChHHHHHHHHH
Q 027757          194 MTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~  212 (219)
                      ++||++|.|+++++++|..
T Consensus       139 ~~Sa~~~~gv~~~~~~l~~  157 (158)
T cd00878         139 PCSAVTGDGLDEGLDWLLQ  157 (158)
T ss_pred             EeeCCCCCCHHHHHHHHhh
Confidence            9999999999999998864

Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu

>COG0486 ThdF Predicted GTPase [General function prediction only]

Probab=99.88  E-value=1.3e-21  Score=158.51  Aligned_cols=159  Identities=30%  Similarity=0.295  Sum_probs=118.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--ec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--VN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      -++++|+|.||+|||||+|+|++. +.+.+++.+|||++.-+..  .+ .++.++||.|+..+.. ...++-.+    ..
T Consensus       217 G~kvvIiG~PNvGKSSLLNaL~~~-d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d-~VE~iGIe----Rs  290 (454)
T COG0486         217 GLKVVIIGRPNVGKSSLLNALLGR-DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDD-VVERIGIE----RA  290 (454)
T ss_pred             CceEEEECCCCCcHHHHHHHHhcC-CceEecCCCCCccceEEEEEEECCEEEEEEecCCcccCcc-HHHHHHHH----HH
Confidence            479999999999999999999998 7999999999999875443  33 3899999999974422 22211111    11


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      ....+.||.+++|+|++.+....+..... ....++|+++|+||.|+.....       ....      ......+++.+
T Consensus       291 ~~~i~~ADlvL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~~~-------~~~~------~~~~~~~~i~i  356 (454)
T COG0486         291 KKAIEEADLVLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSKIE-------LESE------KLANGDAIISI  356 (454)
T ss_pred             HHHHHhCCEEEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccccc-------cchh------hccCCCceEEE
Confidence            22244489999999999987776666555 4556899999999999987521       1111      11222478999


Q ss_pred             ecCCCCChHHHHHHHHHHHhhh
Q 027757          196 SSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      |++++.|+++|.+.|.+.+...
T Consensus       357 Sa~t~~Gl~~L~~~i~~~~~~~  378 (454)
T COG0486         357 SAKTGEGLDALREAIKQLFGKG  378 (454)
T ss_pred             EecCccCHHHHHHHHHHHHhhc
Confidence            9999999999999999877653

>TIGR02528 EutP ethanolamine utilization protein, EutP

Probab=99.88  E-value=1.3e-21  Score=139.53  Aligned_cols=140  Identities=22%  Similarity=0.197  Sum_probs=92.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      ||+++|++|+|||||+|+|.+..+  ...++    ....   ..  ..++||||...     ..+..|..+.. .++.  
T Consensus         2 kv~liG~~~vGKSsL~~~l~~~~~--~~~~t----~~~~---~~--~~~iDt~G~~~-----~~~~~~~~~~~-~~~~--   62 (142)
T TIGR02528         2 RIMFIGSVGCGKTTLTQALQGEEI--LYKKT----QAVE---YN--DGAIDTPGEYV-----ENRRLYSALIV-TAAD--   62 (142)
T ss_pred             eEEEECCCCCCHHHHHHHHcCCcc--ccccc----eeEE---Ec--CeeecCchhhh-----hhHHHHHHHHH-Hhhc--
Confidence            899999999999999999998742  11111    1111   11  15899999521     11222344433 3445  


Q ss_pred             CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757          121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG  200 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  200 (219)
                       +|++|+|+|++++.+.........   ...|+++|+||+|+.+.   ....+..+++.+...     ..+++++||+++
T Consensus        63 -ad~vilv~d~~~~~s~~~~~~~~~---~~~p~ilv~NK~Dl~~~---~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~  130 (142)
T TIGR02528        63 -ADVIALVQSATDPESRFPPGFASI---FVKPVIGLVTKIDLAEA---DVDIERAKELLETAG-----AEPIFEISSVDE  130 (142)
T ss_pred             -CCEEEEEecCCCCCcCCChhHHHh---ccCCeEEEEEeeccCCc---ccCHHHHHHHHHHcC-----CCcEEEEecCCC
Confidence             899999999999888765433332   24599999999998642   122233333333321     147899999999


Q ss_pred             CChHHHHHHHH
Q 027757          201 LGRDELLLHMS  211 (219)
Q Consensus       201 ~~v~el~~~l~  211 (219)
                      .|++++++++.
T Consensus       131 ~gi~~l~~~l~  141 (142)
T TIGR02528       131 QGLEALVDYLN  141 (142)
T ss_pred             CCHHHHHHHHh
Confidence            99999999874

This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.

>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases

Probab=99.88  E-value=1.6e-21  Score=146.43  Aligned_cols=147  Identities=16%  Similarity=0.262  Sum_probs=106.2

Q ss_pred             EcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757           45 LGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES  121 (219)
Q Consensus        45 ~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (219)
                      +|..|+|||||+++++...+...+.++.+.+.....+..+   ..+.+|||+|          ++.|..++..|++.   
T Consensus         1 vG~~~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDt~G----------~e~~~~l~~~~~~~---   67 (200)
T smart00176        1 VGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAG----------QEKFGGLRDGYYIQ---   67 (200)
T ss_pred             CCCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCC----------chhhhhhhHHHhcC---
Confidence            6999999999999999876666666666655543333332   3688999988          34567788889888   


Q ss_pred             ccEEEEEEeCCCCCCcccHHHHHHhc---c--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          122 LVGVLLLIDASVPPQKIDLDCANWLG---R--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~~~~~~~~---~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      +|++|+|+|+++..+.....  .|+.   +  .++|+++|+||+|+...   .+..+.. .+.+.      ..++++++|
T Consensus        68 ad~~ilV~D~t~~~S~~~i~--~w~~~i~~~~~~~piilvgNK~Dl~~~---~v~~~~~-~~~~~------~~~~~~e~S  135 (200)
T smart00176       68 GQCAIIMFDVTARVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDVKDR---KVKAKSI-TFHRK------KNLQYYDIS  135 (200)
T ss_pred             CCEEEEEEECCChHHHHHHH--HHHHHHHHhCCCCCEEEEEECcccccc---cCCHHHH-HHHHH------cCCEEEEEe
Confidence            89999999999987765432  2333   2  57899999999998642   2222221 22221      126899999


Q ss_pred             cCCCCChHHHHHHHHHHHhh
Q 027757          197 SVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~~~  216 (219)
                      |++|.|++++|++|.+.+..
T Consensus       136 Ak~~~~v~~~F~~l~~~i~~  155 (200)
T smart00176      136 AKSNYNFEKPFLWLARKLIG  155 (200)
T ss_pred             CCCCCCHHHHHHHHHHHHHh
Confidence            99999999999999876543

Ran is involved in the active transport of proteins through nuclear pores.

>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases

Probab=99.88  E-value=1.6e-21  Score=145.08  Aligned_cols=154  Identities=21%  Similarity=0.268  Sum_probs=103.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...++|+++|.+|+|||||++++.+.. ...+.++.+.+.  .... .+.++.++|+||..          .++..+..+
T Consensus        15 ~~~~~i~ivG~~~~GKTsli~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~   81 (184)
T smart00178       15 NKHAKILFLGLDNAGKTTLLHMLKNDR-LAQHQPTQHPTS--EELAIGNIKFTTFDLGGHQ----------QARRLWKDY   81 (184)
T ss_pred             cccCEEEEECCCCCCHHHHHHHHhcCC-CcccCCccccce--EEEEECCEEEEEEECCCCH----------HHHHHHHHH
Confidence            446899999999999999999999874 333333333222  2222 23478899999952          235667777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH--HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC----
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL--DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY----  186 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----  186 (219)
                      +..   +|++|+|+|++++.+....  .+.+.+.   ..+.|+++|+||+|+...    ...+   ++.+.++...    
T Consensus        82 ~~~---ad~ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~----~~~~---~i~~~l~l~~~~~~  151 (184)
T smart00178       82 FPE---VNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYA----ASED---ELRYALGLTNTTGS  151 (184)
T ss_pred             hCC---CCEEEEEEECCcHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC----CCHH---HHHHHcCCCccccc
Confidence            777   8999999999986544322  1222222   257899999999998532    1223   3333332111    


Q ss_pred             -----CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          187 -----PHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       187 -----~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                           .....++++||+++.|++++++||.+.
T Consensus       152 ~~~~~~~~~~i~~~Sa~~~~g~~~~~~wl~~~  183 (184)
T smart00178      152 KGKVGVRPLEVFMCSVVRRMGYGEGFKWLSQY  183 (184)
T ss_pred             ccccCCceeEEEEeecccCCChHHHHHHHHhh
Confidence                 123469999999999999999999754

Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.

>cd01878 HflX HflX subfamily

Probab=99.88  E-value=3.5e-21  Score=145.54  Aligned_cols=157  Identities=24%  Similarity=0.277  Sum_probs=100.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEE-ecC-eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFL-VNK-SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~-~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ...++|+|+|++|+|||||+|++++....  ....+..+...  .... .+. .+.+|||||+..... ......|....
T Consensus        39 ~~~~~I~iiG~~g~GKStLl~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~-~~~~~~~~~~~  115 (204)
T cd01878          39 SGIPTVALVGYTNAGKSTLFNALTGADVY--AEDQLFATLDPTTRRLRLPDGREVLLTDTVGFIRDLP-HQLVEAFRSTL  115 (204)
T ss_pred             cCCCeEEEECCCCCCHHHHHHHHhcchhc--cCCccceeccceeEEEEecCCceEEEeCCCccccCCC-HHHHHHHHHHH
Confidence            55789999999999999999999997422  12222222221  1111 233 799999999743211 11112222222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      . .+.   .+|++++|+|++++.+..+.    ..+..+...++|+++|+||+|+.+..       ...   ...   ...
T Consensus       116 ~-~~~---~~d~ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~-------~~~---~~~---~~~  178 (204)
T cd01878         116 E-EVA---EADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE-------ELE---ERL---EAG  178 (204)
T ss_pred             H-HHh---cCCeEEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH-------HHH---HHh---hcC
Confidence            2 223   37999999999987665443    22233333578999999999997642       111   111   122


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ..+++++||+++.|+++++++|.+.
T Consensus       179 ~~~~~~~Sa~~~~gi~~l~~~L~~~  203 (204)
T cd01878         179 RPDAVFISAKTGEGLDELLEAIEEL  203 (204)
T ss_pred             CCceEEEEcCCCCCHHHHHHHHHhh
Confidence            3689999999999999999998764

A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.

>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily

Probab=99.88  E-value=1.5e-21  Score=144.01  Aligned_cols=152  Identities=18%  Similarity=0.167  Sum_probs=102.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+|+++|++|+|||||++++++..+. ...++.+.+..  .... +..+.++|+||..          .+...+..++
T Consensus        14 ~~~kv~~~G~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~l~D~~G~~----------~~~~~~~~~~   80 (174)
T cd04153          14 KEYKVIIVGLDNAGKTTILYQFLLGEVV-HTSPTIGSNVE--EIVYKNIRFLMWDIGGQE----------SLRSSWNTYY   80 (174)
T ss_pred             CccEEEEECCCCCCHHHHHHHHccCCCC-CcCCccccceE--EEEECCeEEEEEECCCCH----------HHHHHHHHHh
Confidence            3579999999999999999999876443 34444443332  2222 3478999999952          3455566777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  189 (219)
                      +.   +|++|+|+|++++.+....  .+...+..   .++|+++++||+|+...    .   ..++..+.+....  ...
T Consensus        81 ~~---~d~vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~~----~---~~~~i~~~l~~~~~~~~~  150 (174)
T cd04153          81 TN---TDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGA----M---TPAEISESLGLTSIRDHT  150 (174)
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCCEEEEEECCCCCCC----C---CHHHHHHHhCcccccCCc
Confidence            66   8999999999987554321  12222222   46899999999998642    1   1222333332111  123


Q ss_pred             CCeEEeecCCCCChHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      ++++++||++|.|+++++++|.+
T Consensus       151 ~~~~~~SA~~g~gi~e~~~~l~~  173 (174)
T cd04153         151 WHIQGCCALTGEGLPEGLDWIAS  173 (174)
T ss_pred             eEEEecccCCCCCHHHHHHHHhc
Confidence            57899999999999999999864

Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.

>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily

Probab=99.88  E-value=7.2e-22  Score=144.38  Aligned_cols=153  Identities=16%  Similarity=0.185  Sum_probs=101.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ||+++|++|+|||||+++++...+...+.++..... ......++   .+.+|||||.....         ......+++
T Consensus         1 ki~vvG~~~~GKtsli~~~~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~~~   70 (165)
T cd04146           1 KIAVLGASGVGKSALVVRFLTKRFIGEYDPNLESLY-SRQVTIDGEQVSLEILDTAGQQQAD---------TEQLERSIR   70 (165)
T ss_pred             CEEEECCCCCcHHHHHHHHHhCccccccCCChHHhc-eEEEEECCEEEEEEEEECCCCcccc---------cchHHHHHH
Confidence            589999999999999999998655444444432222 12222333   47799999964210         112344555


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHH-HHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDC-ANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .   +|++|+|+|++++.++..... ..++.     ..+.|+++|+||+|+...  ..+..++...+.+..+      .+
T Consensus        71 ~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------~~  139 (165)
T cd04146          71 W---ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY--RQVSTEEGEKLASELG------CL  139 (165)
T ss_pred             h---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh--CccCHHHHHHHHHHcC------CE
Confidence            5   899999999999877654321 22222     247999999999998643  2223333444443322      58


Q ss_pred             eEEeecCCCC-ChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGL-GRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~-~v~el~~~l~~~~  214 (219)
                      ++++||+++. |++++|+.+.+..
T Consensus       140 ~~e~Sa~~~~~~v~~~f~~l~~~~  163 (165)
T cd04146         140 FFEVSAAEDYDGVHSVFHELCREV  163 (165)
T ss_pred             EEEeCCCCCchhHHHHHHHHHHHH
Confidence            9999999995 9999999998754

RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu

>KOG0079 consensus GTP-binding protein H-ray, small G protein superfamily [General function prediction only]

Probab=99.88  E-value=3.3e-22  Score=137.22  Aligned_cols=155  Identities=18%  Similarity=0.213  Sum_probs=119.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC--CCCCCCcchhhhHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY--GFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~--~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .++.+|+|.+|+|||||+.+|....|...+..+.|.         +.++..+|.||.  ..++|++.|++.|+.+...|+
T Consensus         8 LfkllIigDsgVGKssLl~rF~ddtFs~sYitTiGv---------DfkirTv~i~G~~VkLqIwDtAGqErFrtitstyy   78 (198)
T KOG0079|consen    8 LFKLLIIGDSGVGKSSLLLRFADDTFSGSYITTIGV---------DFKIRTVDINGDRVKLQIWDTAGQERFRTITSTYY   78 (198)
T ss_pred             HHHHHeecCCcccHHHHHHHHhhcccccceEEEeee---------eEEEEEeecCCcEEEEEEeecccHHHHHHHHHHHc
Confidence            467899999999999999999986444433333333         334445566663  346677778999999999999


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++   .+++++|+|+++++++.+.  .+|+.+     ..+|-++|+||+|....  +.+..++...+....+      +.
T Consensus        79 rg---thgv~vVYDVTn~ESF~Nv--~rWLeei~~ncdsv~~vLVGNK~d~~~R--rvV~t~dAr~~A~~mg------ie  145 (198)
T KOG0079|consen   79 RG---THGVIVVYDVTNGESFNNV--KRWLEEIRNNCDSVPKVLVGNKNDDPER--RVVDTEDARAFALQMG------IE  145 (198)
T ss_pred             cC---CceEEEEEECcchhhhHhH--HHHHHHHHhcCccccceecccCCCCccc--eeeehHHHHHHHHhcC------ch
Confidence            99   8999999999999988653  567775     67899999999998764  4455555666655443      78


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +|++|+++..|++..|..|.+++-
T Consensus       146 ~FETSaKe~~NvE~mF~cit~qvl  169 (198)
T KOG0079|consen  146 LFETSAKENENVEAMFHCITKQVL  169 (198)
T ss_pred             heehhhhhcccchHHHHHHHHHHH
Confidence            999999999999999999987543

>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily

Probab=99.88  E-value=3.3e-21  Score=142.87  Aligned_cols=157  Identities=18%  Similarity=0.187  Sum_probs=104.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      .||+++|.+|+|||||++++.+..+.....++...........  ....+.++||||..          .|..+...++.
T Consensus         2 ~kv~l~G~~g~GKTtl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~   71 (180)
T cd04137           2 RKIAVLGSRSVGKSSLTVQFVEGHFVESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQD----------EYSILPQKYSI   71 (180)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhCCCccccCcchhhhEEEEEEECCEEEEEEEEECCChH----------hhHHHHHHHHh
Confidence            5899999999999999999998754443433332111111111  12357899999842          34455666666


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      .   +|++++++|+++..+.....     +.+.....+.|+++|+||+|+...+  .....+...+.+.+.      .++
T Consensus        72 ~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~--~~~~~~~~~~~~~~~------~~~  140 (180)
T cd04137          72 G---IHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQR--QVSTEEGKELAESWG------AAF  140 (180)
T ss_pred             h---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhhcC--ccCHHHHHHHHHHcC------CeE
Confidence            6   89999999999865544321     1122223578999999999986532  222223333333222      589


Q ss_pred             EEeecCCCCChHHHHHHHHHHHhhh
Q 027757          193 IMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++||+++.|+.++++++.+.+...
T Consensus       141 ~~~Sa~~~~gv~~l~~~l~~~~~~~  165 (180)
T cd04137         141 LESSARENENVEEAFELLIEEIEKV  165 (180)
T ss_pred             EEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999999999876654

Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le

>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site

Probab=99.88  E-value=5.3e-22  Score=148.17  Aligned_cols=159  Identities=26%  Similarity=0.314  Sum_probs=109.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccccc----------------ccCCCCeeEE---eeEE--EecCeEEEEeCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELAL----------------TSKKPGKTQL---INHF--LVNKSWYIVDLPGYGF   97 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~----------------~~~~~~~t~~---~~~~--~~~~~~~liDtpg~~~   97 (219)
                      ..+|+++|+.++|||||+++|++......                .....+.+..   ....  ..+..+.++||||+. 
T Consensus         3 ~~~I~i~G~~~sGKTTL~~~L~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~ti~~~~~~~~~~~~~~~i~~iDtPG~~-   81 (188)
T PF00009_consen    3 IRNIAIIGHVDSGKTTLLGALLGKAGAIDKRGIEETKNAFLDKHPEERERGITIDLSFISFEKNENNRKITLIDTPGHE-   81 (188)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHTSSSSHHHHHHHHCHHHSSHHHHHCTSSSSSEEEEEEBTESSEEEEEEEESSSH-
T ss_pred             EEEEEEECCCCCCcEeechhhhhhccccccccccccccccccccchhhhcccccccccccccccccccceeeccccccc-
Confidence            46899999999999999999997531100                0011122221   1222  234479999999962 


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS  177 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  177 (219)
                                  .+.....+....+|++|+|+|+.++......+.+..+...++|+++|+||+|+...+    ..+..++
T Consensus        82 ------------~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~~l~~~~~~~~p~ivvlNK~D~~~~~----~~~~~~~  145 (188)
T PF00009_consen   82 ------------DFIKEMIRGLRQADIAILVVDANDGIQPQTEEHLKILRELGIPIIVVLNKMDLIEKE----LEEIIEE  145 (188)
T ss_dssp             ------------HHHHHHHHHHTTSSEEEEEEETTTBSTHHHHHHHHHHHHTT-SEEEEEETCTSSHHH----HHHHHHH
T ss_pred             ------------ceeecccceecccccceeeeecccccccccccccccccccccceEEeeeeccchhhh----HHHHHHH
Confidence                        233444445556999999999999988888888999999999999999999998321    1222333


Q ss_pred             HHHHHHhcCC----CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          178 FQQLIRENYP----HHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       178 ~~~~~~~~~~----~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.+.+.....    ..++++++||.+|.|+++|++.|.+.+
T Consensus       146 ~~~~l~~~~~~~~~~~~~vi~~Sa~~g~gi~~Ll~~l~~~~  186 (188)
T PF00009_consen  146 IKEKLLKEYGENGEEIVPVIPISALTGDGIDELLEALVELL  186 (188)
T ss_dssp             HHHHHHHHTTSTTTSTEEEEEEBTTTTBTHHHHHHHHHHHS
T ss_pred             HHHHhccccccCccccceEEEEecCCCCCHHHHHHHHHHhC
Confidence            3323321121    146899999999999999999998764

The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....

>cd00157 Rho Rho (Ras homology) family

Probab=99.88  E-value=8.1e-22  Score=144.70  Aligned_cols=155  Identities=14%  Similarity=0.082  Sum_probs=99.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      +||+++|++|+|||||+++|++..+.....++............  ...+.++||||...          +..+...+++
T Consensus         1 iki~i~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~D~~g~~~----------~~~~~~~~~~   70 (171)
T cd00157           1 IKIVVVGDGAVGKTCLLISYTTGKFPTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEE----------YDRLRPLSYP   70 (171)
T ss_pred             CEEEEECCCCCCHHHHHHHHHhCCCCCCCCCceeeeeEEEEEECCEEEEEEEEeCCCccc----------ccccchhhcC
Confidence            58999999999999999999998653433333322221111111  22588999999542          1223344444


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccccCC---------CchHhHHHHHHHHHh
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAKGR---------RPDENIKSFQQLIRE  184 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~~~---------~~~~~~~~~~~~~~~  184 (219)
                      .   +|++++|+|++++.+.....  ....+..  .++|+++|+||+|+.......         +..+...++...   
T Consensus        71 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~---  144 (171)
T cd00157          71 N---TDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKE---  144 (171)
T ss_pred             C---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHH---
Confidence            4   89999999999866654421  2222222  469999999999987654321         112222222222   


Q ss_pred             cCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          185 NYPHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                       ++. .+++++||+++.|++++++++.+
T Consensus       145 -~~~-~~~~~~Sa~~~~gi~~l~~~i~~  170 (171)
T cd00157         145 -IGA-IGYMECSALTQEGVKEVFEEAIR  170 (171)
T ss_pred             -hCC-eEEEEeecCCCCCHHHHHHHHhh
Confidence             221 38999999999999999999875

Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein

>cd04151 Arl1 Arl1 subfamily

Probab=99.88  E-value=2e-21  Score=141.05  Aligned_cols=149  Identities=17%  Similarity=0.163  Sum_probs=98.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      ||+++|++|+|||||++++....+. ...++.+.+..  ... .+..+.++||||..          .++.++..++.. 
T Consensus         1 kv~lvG~~~~GKTsl~~~l~~~~~~-~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~-   66 (158)
T cd04151           1 RILILGLDNAGKTTILYRLQLGEVV-TTIPTIGFNVE--TVTYKNLKFQVWDLGGQT----------SIRPYWRCYYSN-   66 (158)
T ss_pred             CEEEECCCCCCHHHHHHHHccCCCc-CcCCccCcCeE--EEEECCEEEEEEECCCCH----------HHHHHHHHHhcC-
Confidence            6899999999999999999876432 33333322221  121 23468899999952          345667777777 


Q ss_pred             CCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCCCCe
Q 027757          120 ESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHPPW  192 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  192 (219)
                        +|++|+|+|++++.+...  ..+...+..   .++|+++|+||+|+....       ...+....+...  .....++
T Consensus        67 --~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~~  137 (158)
T cd04151          67 --TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGAL-------SEAEISEKLGLSELKDRTWSI  137 (158)
T ss_pred             --CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCCCC-------CHHHHHHHhCccccCCCcEEE
Confidence              899999999987644322  122222222   478999999999986431       122222222211  1112469


Q ss_pred             EEeecCCCCChHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~  212 (219)
                      +++||++|.|+++++++|.+
T Consensus       138 ~~~Sa~~~~gi~~l~~~l~~  157 (158)
T cd04151         138 FKTSAIKGEGLDEGMDWLVN  157 (158)
T ss_pred             EEeeccCCCCHHHHHHHHhc
Confidence            99999999999999999865

Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.

>cd04160 Arfrp1 Arfrp1 subfamily

Probab=99.88  E-value=1.1e-21  Score=143.61  Aligned_cols=154  Identities=22%  Similarity=0.203  Sum_probs=97.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccc---cccCCCCeeE--EeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELA---LTSKKPGKTQ--LINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~---~~~~~~~~t~--~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      +|+++|++|+|||||+++|++.. ..   ........+.  ....+.. +..+.++||||..          .+..+...
T Consensus         1 ~i~~vG~~~~GKstLi~~l~~~~-~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~   69 (167)
T cd04160           1 SVLILGLDNAGKTTFLEQLKTLF-SKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQE----------SLRSLWDK   69 (167)
T ss_pred             CEEEEecCCCCHHHHHHHHhhhc-ccccCCcccccCCccccceEEEEECCEEEEEEECCCCh----------hhHHHHHH
Confidence            58999999999999999998752 21   0011111111  1122222 3478999999953          24555666


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccH-HHHH-Hhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc-CCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDL-DCAN-WLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~-~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~  188 (219)
                      ++..   +|++++|+|++++.+.... ..+. .+.   ..++|+++++||+|+....    ...+..++....... ...
T Consensus        70 ~~~~---~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~~----~~~~~~~~~~~~~~~~~~~  142 (167)
T cd04160          70 YYAE---CHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDAL----SVEEIKEVFQDKAEEIGRR  142 (167)
T ss_pred             HhCC---CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccCC----CHHHHHHHhccccccccCC
Confidence            7766   8999999999876543321 1111 111   2579999999999986531    122233332222111 112


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      ..+++++||++|.|++++++||.+
T Consensus       143 ~~~~~~~Sa~~g~gv~e~~~~l~~  166 (167)
T cd04160         143 DCLVLPVSALEGTGVREGIEWLVE  166 (167)
T ss_pred             ceEEEEeeCCCCcCHHHHHHHHhc
Confidence            357999999999999999999864

Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.

>cd00879 Sar1 Sar1 subfamily

Probab=99.88  E-value=2e-21  Score=145.27  Aligned_cols=156  Identities=22%  Similarity=0.281  Sum_probs=102.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+|+++|++|+|||||++++.+..+ ..+.++.+.+.  ..... +..+.++|+||..          .+...+..++
T Consensus        18 ~~~ki~ilG~~~~GKStLi~~l~~~~~-~~~~~T~~~~~--~~i~~~~~~~~l~D~~G~~----------~~~~~~~~~~   84 (190)
T cd00879          18 KEAKILFLGLDNAGKTTLLHMLKDDRL-AQHVPTLHPTS--EELTIGNIKFKTFDLGGHE----------QARRLWKDYF   84 (190)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhcCCC-cccCCccCcce--EEEEECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence            368999999999999999999998643 33444333222  22222 3467899999842          2345566677


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH--HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-------
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE-------  184 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-------  184 (219)
                      ..   +|++++|+|+++..+....  .+...+.   ..+.|+++++||+|+...    +..+.++........       
T Consensus        85 ~~---ad~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~  157 (190)
T cd00879          85 PE---VDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGA----VSEEELRQALGLYGTTTGKGVS  157 (190)
T ss_pred             cc---CCEEEEEEECCcHHHHHHHHHHHHHHHcCccccCCCEEEEEeCCCCCCC----cCHHHHHHHhCccccccccccc
Confidence            66   8999999999976543221  1112222   256999999999998642    222333333221110       


Q ss_pred             ---cCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          185 ---NYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       185 ---~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                         ......+++++||++|.|++|+++||.+.
T Consensus       158 ~~~~~~~~~~~~~~Sa~~~~gv~e~~~~l~~~  189 (190)
T cd00879         158 LKVSGIRPIEVFMCSVVKRQGYGEAFRWLSQY  189 (190)
T ss_pred             ccccCceeEEEEEeEecCCCChHHHHHHHHhh
Confidence               11123468999999999999999999765

Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.

>cd00881 GTP_translation_factor GTP translation factor family

Probab=99.88  E-value=5.4e-21  Score=142.44  Aligned_cols=158  Identities=21%  Similarity=0.237  Sum_probs=106.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccC--------------CCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcc
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSK--------------KPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDV  103 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~--------------~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~  103 (219)
                      +|+|+|.+|+|||||+|+|++.........              ..+.+.....  .. .+..+.++||||..       
T Consensus         1 ~v~v~G~~~~GKStlln~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~liDtpG~~-------   73 (189)
T cd00881           1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHE-------   73 (189)
T ss_pred             CEEEEeCCCCCHHHHHHHHHHhcCCCCcCCceecccccCCHHHHHcCCCeecceEEEeeCCEEEEEEeCCCcH-------
Confidence            489999999999999999998743222111              1122222211  11 23478999999963       


Q ss_pred             hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                         .+......+++.   +|++++|+|+.++......+.+..+...+.|+++|+||+|+...+..   ....+...+.+.
T Consensus        74 ---~~~~~~~~~~~~---~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~i~iv~nK~D~~~~~~~---~~~~~~~~~~~~  144 (189)
T cd00881          74 ---DFSSEVIRGLSV---SDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDL---EEVLREIKELLG  144 (189)
T ss_pred             ---HHHHHHHHHHHh---cCEEEEEEECCCCCcHHHHHHHHHHHHCCCCeEEEEECCCCcchhcH---HHHHHHHHHHHc
Confidence               233445556655   89999999999877666666666666678999999999999863211   122223333332


Q ss_pred             hcC-----------CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          184 ENY-----------PHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       184 ~~~-----------~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ...           ....+++++||+.|.|++++++++.+.+
T Consensus       145 ~~~~~~~~~~~~~~~~~~~v~~~Sa~~g~gi~~l~~~l~~~l  186 (189)
T cd00881         145 LIGFISTKEEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHL  186 (189)
T ss_pred             cccccchhhhhcccCCcceEEEEecccCcCHHHHHHHHHhhC
Confidence            211           1357899999999999999999998764

This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.

>cd00876 Ras Ras family

Probab=99.88  E-value=4.6e-21  Score=139.00  Aligned_cols=151  Identities=19%  Similarity=0.267  Sum_probs=103.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ||+++|++|+|||||++++++..+.....+... .........+   ..+.++|+||..          .+..+...++.
T Consensus         1 ki~i~G~~~~GKTsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~D~~g~~----------~~~~~~~~~~~   69 (160)
T cd00876           1 KVVVLGAGGVGKSAITIQFVKGTFVEEYDPTIE-DSYRKTIVVDGETYTLDILDTAGQE----------EFSAMRDLYIR   69 (160)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCCCcCcCCChh-HeEEEEEEECCEEEEEEEEECCChH----------HHHHHHHHHHh
Confidence            689999999999999999998754444444444 2222222233   357899999942          24556666666


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      .   +|++++|+|++++.+..... ....+    .....|+++|+||+|+...  .....+..+.+.....      .++
T Consensus        70 ~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~--~~~~~~~~~~~~~~~~------~~~  138 (160)
T cd00876          70 Q---GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENE--RQVSKEEGKALAKEWG------CPF  138 (160)
T ss_pred             c---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCccccc--ceecHHHHHHHHHHcC------CcE
Confidence            6   89999999999876544321 11111    1247999999999998763  2222333334433322      689


Q ss_pred             EEeecCCCCChHHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +++|++++.|+++++++|.+.
T Consensus       139 ~~~S~~~~~~i~~l~~~l~~~  159 (160)
T cd00876         139 IETSAKDNINIDEVFKLLVRE  159 (160)
T ss_pred             EEeccCCCCCHHHHHHHHHhh
Confidence            999999999999999999764

The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m

>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily

Probab=99.88  E-value=6e-21  Score=138.23  Aligned_cols=154  Identities=25%  Similarity=0.304  Sum_probs=103.1

Q ss_pred             EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      |+|.+|+|||||+|++++..  ....+.++++....  .+.. +..+.++||||.........    -..+...++.. +
T Consensus         1 l~G~~~~GKssl~~~~~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~----~~~~~~~~~~~-~   73 (158)
T cd01879           1 LVGNPNVGKTTLFNALTGAR--QKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSE----DEKVARDFLLG-E   73 (158)
T ss_pred             CCCCCCCCHHHHHHHHhcCc--ccccCCCCcccccceEEEeeCCeEEEEEECCCccccCCCCh----hHHHHHHHhcC-C
Confidence            58999999999999999974  34444555554432  2222 34789999999753221111    12344555543 4


Q ss_pred             CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757          121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG  200 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  200 (219)
                      .+|++|+|+|+.++...  .....++...++|+++|+||+|+.+....   ....+.+.+.+.      .+++++||+++
T Consensus        74 ~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~iiv~NK~Dl~~~~~~---~~~~~~~~~~~~------~~~~~iSa~~~  142 (158)
T cd01879          74 KPDLIVNVVDATNLERN--LYLTLQLLELGLPVVVALNMIDEAEKRGI---KIDLDKLSELLG------VPVVPTSARKG  142 (158)
T ss_pred             CCcEEEEEeeCCcchhH--HHHHHHHHHcCCCEEEEEehhhhcccccc---hhhHHHHHHhhC------CCeEEEEccCC
Confidence            58999999999975442  33344556678999999999999764321   112233333222      58999999999


Q ss_pred             CChHHHHHHHHHHHh
Q 027757          201 LGRDELLLHMSQLRN  215 (219)
Q Consensus       201 ~~v~el~~~l~~~~~  215 (219)
                      .|++++++++.+.++
T Consensus       143 ~~~~~l~~~l~~~~~  157 (158)
T cd01879         143 EGIDELKDAIAELAE  157 (158)
T ss_pred             CCHHHHHHHHHHHhc
Confidence            999999999988754

E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.

>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily

Probab=99.87  E-value=1.7e-21  Score=142.70  Aligned_cols=153  Identities=18%  Similarity=0.189  Sum_probs=103.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      .|+++|++|+|||||+++|.+. +...+.++.+.+.. .....+..+.++|+||.          ..+..++..|++.  
T Consensus         1 ~i~~~G~~~~GKTsl~~~l~~~-~~~~~~~t~g~~~~-~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~~--   66 (167)
T cd04161           1 TLLTVGLDNAGKTTLVSALQGE-IPKKVAPTVGFTPT-KLRLDKYEVCIFDLGGG----------ANFRGIWVNYYAE--   66 (167)
T ss_pred             CEEEECCCCCCHHHHHHHHhCC-CCccccCcccceEE-EEEECCEEEEEEECCCc----------HHHHHHHHHHHcC--
Confidence            4899999999999999999987 56666666665432 11122447889999994          2345677788877  


Q ss_pred             CccEEEEEEeCCCCCCcccH-HHHHHh-cc---CCCcEEEEEEcccccccccCCCchHhHHHHH--HHHHhcCCCCCCeE
Q 027757          121 SLVGVLLLIDASVPPQKIDL-DCANWL-GR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ--QLIRENYPHHPPWI  193 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~-~~~~~~-~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  193 (219)
                       +|++|+|+|+++..+.... ..+..+ ..   .++|+++|+||+|+.....    ..++.+..  +.+.......++++
T Consensus        67 -a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~~~----~~~i~~~~~l~~~~~~~~~~~~~~  141 (167)
T cd04161          67 -AHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALL----GADVIEYLSLEKLVNENKSLCHIE  141 (167)
T ss_pred             -CCEEEEEEECCchhHHHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCCCC----HHHHHHhcCcccccCCCCceEEEE
Confidence             8999999999987654432 112212 11   4789999999999875421    11121111  11111112335788


Q ss_pred             EeecCCC------CChHHHHHHHHH
Q 027757          194 MTSSVTG------LGRDELLLHMSQ  212 (219)
Q Consensus       194 ~~Sa~~~------~~v~el~~~l~~  212 (219)
                      ++||++|      .|+.+.++||.+
T Consensus       142 ~~Sa~~g~~~~~~~g~~~~~~wl~~  166 (167)
T cd04161         142 PCSAIEGLGKKIDPSIVEGLRWLLA  166 (167)
T ss_pred             EeEceeCCCCccccCHHHHHHHHhc
Confidence            8999998      899999999975

Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.

>PRK12296 obgE GTPase CgtA; Reviewed

Probab=99.87  E-value=1.2e-20  Score=157.13  Aligned_cols=189  Identities=18%  Similarity=0.199  Sum_probs=124.4

Q ss_pred             cccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE
Q 027757           12 PYAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL   77 (219)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~   77 (219)
                      ..++.....|..|..+..+.+.....+              ...|+|+|.+|||||||+|+|++.+  +.+.+.+++|..
T Consensus       118 a~GG~GG~Gn~~f~~~~~~~p~~~~~G~~Ge~~~~~leLk~~adV~LVG~PNAGKSTLln~Ls~ak--pkIadypfTTl~  195 (500)
T PRK12296        118 AAGGRGGLGNAALASKARKAPGFALLGEPGEERDLVLELKSVADVGLVGFPSAGKSSLISALSAAK--PKIADYPFTTLV  195 (500)
T ss_pred             EccCCCcCCCcccCCccCCCCccccCCCCCceEEEEEEecccceEEEEEcCCCCHHHHHHHHhcCC--ccccccCccccc
Confidence            366666677777766655544433222              3589999999999999999999863  456777888876


Q ss_pred             eeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC----CcccH-----HHHHH
Q 027757           78 INHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP----QKIDL-----DCANW  145 (219)
Q Consensus        78 ~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~----~~~~~-----~~~~~  145 (219)
                      +....+   +..+.++||||+.....      ....+...+++..+.+|++|+|+|+++..    ...+.     ++..+
T Consensus       196 P~lGvv~~~~~~f~laDtPGliegas------~g~gLg~~fLrhieradvLv~VVD~s~~e~~rdp~~d~~~i~~EL~~y  269 (500)
T PRK12296        196 PNLGVVQAGDTRFTVADVPGLIPGAS------EGKGLGLDFLRHIERCAVLVHVVDCATLEPGRDPLSDIDALEAELAAY  269 (500)
T ss_pred             ceEEEEEECCeEEEEEECCCCccccc------hhhHHHHHHHHHHHhcCEEEEEECCcccccccCchhhHHHHHHHHHHh
Confidence            544332   34799999999753211      11223344555555689999999998532    11111     22222


Q ss_pred             hc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          146 LG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       146 ~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..          ..++|.++|+||+|+.+..      +..+.+...+...   ..+++++||+++.|+++++.+|.+.++
T Consensus       270 ~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~------el~e~l~~~l~~~---g~~Vf~ISA~tgeGLdEL~~~L~ell~  340 (500)
T PRK12296        270 APALDGDLGLGDLAERPRLVVLNKIDVPDAR------ELAEFVRPELEAR---GWPVFEVSAASREGLRELSFALAELVE  340 (500)
T ss_pred             hhcccccchhhhhcCCCEEEEEECccchhhH------HHHHHHHHHHHHc---CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence            21          2468999999999986431      1122222233321   258999999999999999999998876


Q ss_pred             hh
Q 027757          216 YW  217 (219)
Q Consensus       216 ~~  217 (219)
                      ..
T Consensus       341 ~~  342 (500)
T PRK12296        341 EA  342 (500)
T ss_pred             hh
Confidence            64

>cd01873 RhoBTB RhoBTB subfamily

Probab=99.87  E-value=3.2e-21  Score=144.48  Aligned_cols=154  Identities=19%  Similarity=0.126  Sum_probs=102.7

Q ss_pred             CCeEEEEcCCCCCHHHHHH-HHhcCcc-----cccccCCCCe-eEEeeE--------EEec---CeEEEEeCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLIN-ALVRKKE-----LALTSKKPGK-TQLINH--------FLVN---KSWYIVDLPGYGFAKA  100 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin-~l~~~~~-----~~~~~~~~~~-t~~~~~--------~~~~---~~~~liDtpg~~~~~~  100 (219)
                      .+||+++|.+|+|||||+. ++.+..+     ...+.++.+. ......        ...+   ..+.+|||+|...   
T Consensus         2 ~~Kiv~vG~~~vGKTsLi~~~~~~~~~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~~~~~~~~~v~l~iwDTaG~~~---   78 (195)
T cd01873           2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVPTVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGDHD---   78 (195)
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCcccccCccccCCceecccceeEEeeeccccceeeCCEEEEEEEEeCCCChh---
Confidence            4699999999999999996 6655422     2223333321 111100        1122   2688999999531   


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccc-----------
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKV-----------  165 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~-----------  165 (219)
                               .+...+++.   +|++|+|+|++++.++....  ....+..  .+.|+++|+||+|+...           
T Consensus        79 ---------~~~~~~~~~---ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~  146 (195)
T cd01873          79 ---------KDRRFAYGR---SDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRP  146 (195)
T ss_pred             ---------hhhcccCCC---CCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccccccchhhhcccc
Confidence                     123446666   89999999999988775542  1222222  47899999999998642           


Q ss_pred             ------ccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          166 ------AKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       166 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                            ..+.+..++.+++.+.++      ++++++||++|.|++++|+.+.+.
T Consensus       147 ~~~~~~~~~~V~~~e~~~~a~~~~------~~~~E~SAkt~~~V~e~F~~~~~~  194 (195)
T cd01873         147 LARPIKNADILPPETGRAVAKELG------IPYYETSVVTQFGVKDVFDNAIRA  194 (195)
T ss_pred             cccccccCCccCHHHHHHHHHHhC------CEEEEcCCCCCCCHHHHHHHHHHh
Confidence                  124555666666665544      589999999999999999988764

Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.

>KOG0091 consensus GTPase Rab39, small G protein superfamily [General function prediction only]

Probab=99.87  E-value=9.7e-22  Score=137.10  Aligned_cols=156  Identities=22%  Similarity=0.256  Sum_probs=123.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cC--eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NK--SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~--~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ..+|++++|++-+|||||+..|+..++....+|+.|.+........  +.  ++.+|||.          ||+.|+++.+
T Consensus         7 yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdta----------gqerfrsitk   76 (213)
T KOG0091|consen    7 YQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTA----------GQERFRSITK   76 (213)
T ss_pred             EEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeecc----------chHHHHHHHH
Confidence            4679999999999999999999998877777888776654322111  11  45666665          5899999999


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      .||++   +-++++|+|+++..++.+.  ..|+.+        .++-+.+|++|+|+..+  +++..++.+.+..+.+  
T Consensus        77 syyrn---svgvllvyditnr~sfehv--~~w~~ea~m~~q~P~k~VFlLVGhKsDL~Sq--RqVt~EEaEklAa~hg--  147 (213)
T KOG0091|consen   77 SYYRN---SVGVLLVYDITNRESFEHV--ENWVKEAAMATQGPDKVVFLLVGHKSDLQSQ--RQVTAEEAEKLAASHG--  147 (213)
T ss_pred             HHhhc---ccceEEEEeccchhhHHHH--HHHHHHHHHhcCCCCeeEEEEeccccchhhh--ccccHHHHHHHHHhcC--
Confidence            99999   7889999999998887653  345443        45668899999999864  7777888888877766  


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                          ..++++||++|.|++|.|..|.+.+-.
T Consensus       148 ----M~FVETSak~g~NVeEAF~mlaqeIf~  174 (213)
T KOG0091|consen  148 ----MAFVETSAKNGCNVEEAFDMLAQEIFQ  174 (213)
T ss_pred             ----ceEEEecccCCCcHHHHHHHHHHHHHH
Confidence                478999999999999999999876543

>TIGR03156 GTP_HflX GTP-binding protein HflX

Probab=99.87  E-value=1.2e-20  Score=152.64  Aligned_cols=156  Identities=24%  Similarity=0.299  Sum_probs=104.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ...++|+++|.+|+|||||+|+|++..  ....+.+++|.+..  ....  +..+.++||||+... .+....+.|.+..
T Consensus       187 ~~~~~ValvG~~NvGKSSLln~L~~~~--~~v~~~~~tT~d~~~~~i~~~~~~~i~l~DT~G~~~~-l~~~lie~f~~tl  263 (351)
T TIGR03156       187 ADVPTVALVGYTNAGKSTLFNALTGAD--VYAADQLFATLDPTTRRLDLPDGGEVLLTDTVGFIRD-LPHELVAAFRATL  263 (351)
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHhCCc--eeeccCCccccCCEEEEEEeCCCceEEEEecCccccc-CCHHHHHHHHHHH
Confidence            456899999999999999999999974  33344444444332  2222  348999999997321 1122223344443


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      . ++..   +|++++|+|++++.+..+.    ..+..+...++|+++|+||+|+.+.       ......    ..   .
T Consensus       264 e-~~~~---ADlil~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~~-------~~v~~~----~~---~  325 (351)
T TIGR03156       264 E-EVRE---ADLLLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLDE-------PRIERL----EE---G  325 (351)
T ss_pred             H-HHHh---CCEEEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCCh-------HhHHHH----Hh---C
Confidence            3 2344   8999999999988765443    2333333357899999999998653       122211    11   1


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ..+++++||++|.|+++++++|.+.
T Consensus       326 ~~~~i~iSAktg~GI~eL~~~I~~~  350 (351)
T TIGR03156       326 YPEAVFVSAKTGEGLDLLLEAIAER  350 (351)
T ss_pred             CCCEEEEEccCCCCHHHHHHHHHhh
Confidence            1468999999999999999998764

This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).

>KOG0095 consensus GTPase Rab30, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=3.6e-21  Score=132.36  Aligned_cols=152  Identities=20%  Similarity=0.232  Sum_probs=119.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|+.|+|||+|+.+|+..-+.+-...+.|....+..+.+++   ++.+|||.          ||++|+++...
T Consensus         6 flfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdta----------gqerfrsitqs   75 (213)
T KOG0095|consen    6 FLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTA----------GQERFRSITQS   75 (213)
T ss_pred             eeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeecc----------chHHHHHHHHH
Confidence            468999999999999999999999877777777778777777776666   45566665          58999999999


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ||+.   ++++|+|+|++-..++.-  +.+|+.+      .++--++|+||+|+.+.  ++++...-+++.+.-.     
T Consensus        76 yyrs---ahalilvydiscqpsfdc--lpewlreie~yan~kvlkilvgnk~d~~dr--revp~qigeefs~~qd-----  143 (213)
T KOG0095|consen   76 YYRS---AHALILVYDISCQPSFDC--LPEWLREIEQYANNKVLKILVGNKIDLADR--REVPQQIGEEFSEAQD-----  143 (213)
T ss_pred             Hhhh---cceEEEEEecccCcchhh--hHHHHHHHHHHhhcceEEEeeccccchhhh--hhhhHHHHHHHHHhhh-----
Confidence            9999   999999999997666543  2456553      56677999999998875  4555565666655422     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                       .-++++||++..|++.||..+.-
T Consensus       144 -myfletsakea~nve~lf~~~a~  166 (213)
T KOG0095|consen  144 -MYFLETSAKEADNVEKLFLDLAC  166 (213)
T ss_pred             -hhhhhhcccchhhHHHHHHHHHH
Confidence             35789999999999999987754

>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA

Probab=99.87  E-value=4.4e-21  Score=160.47  Aligned_cols=156  Identities=26%  Similarity=0.265  Sum_probs=115.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      +|+|+|.+|+|||||+|+|++.. .+.+.+.+++|++....   +.+..+.++||||+....  ...+..+......++.
T Consensus         1 ~i~ivG~~nvGKStL~n~l~~~~-~~~v~~~~g~t~d~~~~~~~~~~~~~~liDTpG~~~~~--~~~~~~~~~~~~~~~~   77 (429)
T TIGR03594         1 VVAIVGRPNVGKSTLFNRLTGKR-DAIVSDTPGVTRDRKYGDAEWGGREFILIDTGGIEEDD--DGLDKQIREQAEIAIE   77 (429)
T ss_pred             CEEEECCCCCCHHHHHHHHhCCC-cceecCCCCcccCceEEEEEECCeEEEEEECCCCCCcc--hhHHHHHHHHHHHHHh
Confidence            58999999999999999999974 66677788887654332   234579999999975321  1122333344444454


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  197 (219)
                      .   +|++++|+|+.++.+..+..+..++.+.++|+++|+||+|+...+.      ...++    .. ++ ..+++++||
T Consensus        78 ~---ad~vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~~------~~~~~----~~-lg-~~~~~~vSa  142 (429)
T TIGR03594        78 E---ADVILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDA------VAAEF----YS-LG-FGEPIPISA  142 (429)
T ss_pred             h---CCEEEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCcccc------cHHHH----Hh-cC-CCCeEEEeC
Confidence            4   8999999999998888877888899888999999999999875421      11111    11 11 136899999


Q ss_pred             CCCCChHHHHHHHHHHH
Q 027757          198 VTGLGRDELLLHMSQLR  214 (219)
Q Consensus       198 ~~~~~v~el~~~l~~~~  214 (219)
                      +.|.|++++++++.+..
T Consensus       143 ~~g~gv~~ll~~i~~~l  159 (429)
T TIGR03594       143 EHGRGIGDLLDAILELL  159 (429)
T ss_pred             CcCCChHHHHHHHHHhc
Confidence            99999999999998765

EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.

>KOG0087 consensus GTPase Rab11/YPT3, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.87  E-value=1.7e-21  Score=141.63  Aligned_cols=157  Identities=20%  Similarity=0.226  Sum_probs=126.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+||+++|++|+|||-|+.+|+.+.|.....++.|.........++++.+..       ..|++.||++|+.+...||
T Consensus        12 dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vka-------qIWDTAGQERyrAitSaYY   84 (222)
T KOG0087|consen   12 DYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKA-------QIWDTAGQERYRAITSAYY   84 (222)
T ss_pred             ceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEE-------eeecccchhhhccccchhh
Confidence            456899999999999999999999998888778888877665555555543222       3455566999999999999


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++   +-++++|+|+++..++..  +.+|+.+      .++++++|+||+||...  +.+..++...+.+..+      .
T Consensus        85 rg---AvGAllVYDITr~~Tfen--v~rWL~ELRdhad~nivimLvGNK~DL~~l--raV~te~~k~~Ae~~~------l  151 (222)
T KOG0087|consen   85 RG---AVGALLVYDITRRQTFEN--VERWLKELRDHADSNIVIMLVGNKSDLNHL--RAVPTEDGKAFAEKEG------L  151 (222)
T ss_pred             cc---cceeEEEEechhHHHHHH--HHHHHHHHHhcCCCCeEEEEeecchhhhhc--cccchhhhHhHHHhcC------c
Confidence            99   899999999999888764  4677775      67999999999999873  6677777777776544      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .++++||..+.|+++.|+.+...
T Consensus       152 ~f~EtSAl~~tNVe~aF~~~l~~  174 (222)
T KOG0087|consen  152 FFLETSALDATNVEKAFERVLTE  174 (222)
T ss_pred             eEEEecccccccHHHHHHHHHHH
Confidence            88999999999999999877553

>cd04155 Arl3 Arl3 subfamily

Probab=99.87  E-value=1e-20  Score=139.26  Aligned_cols=154  Identities=17%  Similarity=0.207  Sum_probs=100.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...++|+++|++|+|||||++++.+.. .....++.+.+.... ...+..+.++|+||..          .+...+..++
T Consensus        12 ~~~~~v~i~G~~g~GKStLl~~l~~~~-~~~~~~t~g~~~~~i-~~~~~~~~~~D~~G~~----------~~~~~~~~~~   79 (173)
T cd04155          12 SEEPRILILGLDNAGKTTILKQLASED-ISHITPTQGFNIKTV-QSDGFKLNVWDIGGQR----------AIRPYWRNYF   79 (173)
T ss_pred             CCccEEEEEccCCCCHHHHHHHHhcCC-CcccCCCCCcceEEE-EECCEEEEEEECCCCH----------HHHHHHHHHh
Confidence            347899999999999999999999973 344445544332211 1224468899999842          2334455555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH--HHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL--DCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (219)
                      ..   +|++++|+|+++..+....  .....+   ...++|+++++||+|+....       ..+++.+.++..  ....
T Consensus        80 ~~---~~~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~~~-------~~~~i~~~l~~~~~~~~~  149 (173)
T cd04155          80 EN---TDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAA-------PAEEIAEALNLHDLRDRT  149 (173)
T ss_pred             cC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECCCCccCC-------CHHHHHHHcCCcccCCCe
Confidence            55   8999999999875443221  111111   23579999999999986531       233333333221  1112


Q ss_pred             CCeEEeecCCCCChHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      .+++++||++|.|++++++||.+
T Consensus       150 ~~~~~~Sa~~~~gi~~~~~~l~~  172 (173)
T cd04155         150 WHIQACSAKTGEGLQEGMNWVCK  172 (173)
T ss_pred             EEEEEeECCCCCCHHHHHHHHhc
Confidence            35789999999999999999975

Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.

>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily

Probab=99.87  E-value=4.8e-21  Score=139.95  Aligned_cols=152  Identities=16%  Similarity=0.180  Sum_probs=100.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      .|+++|++|+|||||+++|.+..+...+.++.+... ......+..+.+|||||..          .+..++..+++.  
T Consensus         1 ~i~ivG~~~vGKTsli~~~~~~~~~~~~~pt~g~~~-~~i~~~~~~l~i~Dt~G~~----------~~~~~~~~~~~~--   67 (164)
T cd04162           1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTGFNS-VAIPTQDAIMELLEIGGSQ----------NLRKYWKRYLSG--   67 (164)
T ss_pred             CEEEECCCCCCHHHHHHHHhcCCCcccccccCCcce-EEEeeCCeEEEEEECCCCc----------chhHHHHHHHhh--
Confidence            379999999999999999998755555555554322 1111223468899999842          345677788887  


Q ss_pred             CccEEEEEEeCCCCCCcccHH--HHHHhc-cCCCcEEEEEEcccccccccCCCchHhHHHHH--HHHHhcCCCCCCeEEe
Q 027757          121 SLVGVLLLIDASVPPQKIDLD--CANWLG-RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ--QLIRENYPHHPPWIMT  195 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~--~~~~~~-~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~  195 (219)
                       +|++|+|+|++++.+.....  +...+. ..++|+++|+||+|+.....    ...+....  ..+..  ...++++++
T Consensus        68 -ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~~~----~~~i~~~~~~~~~~~--~~~~~~~~~  140 (164)
T cd04162          68 -SQGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARS----VQEIHKELELEPIAR--GRRWILQGT  140 (164)
T ss_pred             -CCEEEEEEECCCHHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCCCC----HHHHHHHhCChhhcC--CCceEEEEe
Confidence             89999999999876443221  122222 26799999999999865421    11111111  11211  123678889


Q ss_pred             ecCC------CCChHHHHHHHHH
Q 027757          196 SSVT------GLGRDELLLHMSQ  212 (219)
Q Consensus       196 Sa~~------~~~v~el~~~l~~  212 (219)
                      ||++      +.|++++|+.+..
T Consensus       141 Sa~~~~s~~~~~~v~~~~~~~~~  163 (164)
T cd04162         141 SLDDDGSPSRMEAVKDLLSQLIN  163 (164)
T ss_pred             eecCCCChhHHHHHHHHHHHHhc
Confidence            8888      9999999988753

Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.

>cd04159 Arl10_like Arl10-like subfamily

Probab=99.86  E-value=1.6e-20  Score=135.71  Aligned_cols=150  Identities=17%  Similarity=0.134  Sum_probs=100.3

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757           42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES  121 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (219)
                      |+++|++|+|||||+++|.+..+.....++.+..... .......+.++|+||.          ..+...+..++..   
T Consensus         2 i~i~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~g~----------~~~~~~~~~~~~~---   67 (159)
T cd04159           2 ITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFNMRK-VTKGNVTLKVWDLGGQ----------PRFRSMWERYCRG---   67 (159)
T ss_pred             EEEEcCCCCCHHHHHHHHccCCCCcCccCCCCcceEE-EEECCEEEEEEECCCC----------HhHHHHHHHHHhc---
Confidence            7999999999999999999986655555544433221 1112246889999984          2345566777766   


Q ss_pred             ccEEEEEEeCCCCCCcccH-H-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--hcCCCCCCeEE
Q 027757          122 LVGVLLLIDASVPPQKIDL-D-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR--ENYPHHPPWIM  194 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~-~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  194 (219)
                      +|++++|+|+++..+.... . +..++.   ..++|+++|+||+|+.+..       ..++....+.  ......+++++
T Consensus        68 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~  140 (159)
T cd04159          68 VNAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGAL-------SVDELIEQMNLKSITDREVSCYS  140 (159)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCCc-------CHHHHHHHhCcccccCCceEEEE
Confidence            8999999999875543221 1 112221   1578999999999986531       1222222221  11223367899


Q ss_pred             eecCCCCChHHHHHHHHH
Q 027757          195 TSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~  212 (219)
                      +|++++.|+++++++|.+
T Consensus       141 ~Sa~~~~gi~~l~~~l~~  158 (159)
T cd04159         141 ISCKEKTNIDIVLDWLIK  158 (159)
T ss_pred             EEeccCCChHHHHHHHhh
Confidence            999999999999999875

Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.

>cd04129 Rho2 Rho2 subfamily

Probab=99.86  E-value=1.2e-20  Score=140.84  Aligned_cols=158  Identities=16%  Similarity=0.130  Sum_probs=99.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +.||+++|+.|+|||||+++|....+.....++...... .....+   ..+.++||+|....          ..+...+
T Consensus         1 ~~Ki~ivG~~g~GKStLl~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~g~~~~----------~~~~~~~   69 (187)
T cd04129           1 RRKLVIVGDGACGKTSLLSVFTLGEFPEEYHPTVFENYV-TDCRVDGKPVQLALWDTAGQEEY----------ERLRPLS   69 (187)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEE-EEEEECCEEEEEEEEECCCChhc----------cccchhh
Confidence            358999999999999999999865444433333222211 122222   24788999985321          1222334


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc--------CCCchHhHHHHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK--------GRRPDENIKSFQQLIR  183 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~~  183 (219)
                      +..   +|++++++|+++..+.....  ....+.  ..+.|+++|+||+|+.....        +.+..+....+.+.++
T Consensus        70 ~~~---a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (187)
T cd04129          70 YSK---AHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIG  146 (187)
T ss_pred             cCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhC
Confidence            444   89999999999876654431  122222  24799999999999854211        1222223333333322


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                           ..++|++||+++.|++++|+++.+.+-
T Consensus       147 -----~~~~~e~Sa~~~~~v~~~f~~l~~~~~  173 (187)
T cd04129         147 -----AKKYMECSALTGEGVDDVFEAATRAAL  173 (187)
T ss_pred             -----CcEEEEccCCCCCCHHHHHHHHHHHHh
Confidence                 147999999999999999999987543

Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).

>PRK15467 ethanolamine utilization protein EutP; Provisional

Probab=99.86  E-value=2.6e-20  Score=135.16  Aligned_cols=146  Identities=17%  Similarity=0.168  Sum_probs=93.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      +|+++|.+|+|||||+|++.+.. . .. .   .+..... ...   .+|||||......     ..+..+..    ..+
T Consensus         3 ~i~~iG~~~~GKstl~~~l~~~~-~-~~-~---~~~~v~~-~~~---~~iDtpG~~~~~~-----~~~~~~~~----~~~   63 (158)
T PRK15467          3 RIAFVGAVGAGKTTLFNALQGNY-T-LA-R---KTQAVEF-NDK---GDIDTPGEYFSHP-----RWYHALIT----TLQ   63 (158)
T ss_pred             EEEEECCCCCCHHHHHHHHcCCC-c-cC-c---cceEEEE-CCC---CcccCCccccCCH-----HHHHHHHH----HHh
Confidence            79999999999999999999862 1 11 1   1111111 111   2699999642211     11122221    233


Q ss_pred             CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCC
Q 027757          121 SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTG  200 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~  200 (219)
                      .+|++++|+|++++.+.....+...  ..+.|+++++||+|+...+     .+...++...    .+...|++++||++|
T Consensus        64 ~ad~il~v~d~~~~~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~~~-----~~~~~~~~~~----~~~~~p~~~~Sa~~g  132 (158)
T PRK15467         64 DVDMLIYVHGANDPESRLPAGLLDI--GVSKRQIAVISKTDMPDAD-----VAATRKLLLE----TGFEEPIFELNSHDP  132 (158)
T ss_pred             cCCEEEEEEeCCCcccccCHHHHhc--cCCCCeEEEEEccccCccc-----HHHHHHHHHH----cCCCCCEEEEECCCc
Confidence            4899999999998876654433332  2467999999999985421     1222333222    222359999999999


Q ss_pred             CChHHHHHHHHHHHhh
Q 027757          201 LGRDELLLHMSQLRNY  216 (219)
Q Consensus       201 ~~v~el~~~l~~~~~~  216 (219)
                      .|++++++++.+....
T Consensus       133 ~gi~~l~~~l~~~~~~  148 (158)
T PRK15467        133 QSVQQLVDYLASLTKQ  148 (158)
T ss_pred             cCHHHHHHHHHHhchh
Confidence            9999999999987754

>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed

Probab=99.86  E-value=2.1e-20  Score=156.14  Aligned_cols=154  Identities=27%  Similarity=0.299  Sum_probs=107.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|.+|+|||||+|+|++. .....++.+++|.+...  +. .+..+.++||||+.... +......++. ...+
T Consensus       215 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~i~l~DT~G~~~~~-~~ie~~gi~~-~~~~  291 (449)
T PRK05291        215 GLKVVIAGRPNVGKSSLLNALLGE-ERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETD-DEVEKIGIER-SREA  291 (449)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCcccccEEEEEEECCeEEEEEeCCCCCCCc-cHHHHHHHHH-HHHH
Confidence            479999999999999999999997 45556777787765432  22 23479999999975321 1111110111 1223


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      +..   +|++++|+|++++.+..+...+..  ..+.|+++|+||+|+.+...       ..         .....+++++
T Consensus       292 ~~~---aD~il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~~~~-------~~---------~~~~~~~i~i  350 (449)
T PRK05291        292 IEE---ADLVLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTGEID-------LE---------EENGKPVIRI  350 (449)
T ss_pred             HHh---CCEEEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccccch-------hh---------hccCCceEEE
Confidence            444   899999999998877655443333  45789999999999975321       11         1112578999


Q ss_pred             ecCCCCChHHHHHHHHHHHhh
Q 027757          196 SSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ||++|.|+++++++|.+.+..
T Consensus       351 SAktg~GI~~L~~~L~~~l~~  371 (449)
T PRK05291        351 SAKTGEGIDELREAIKELAFG  371 (449)
T ss_pred             EeeCCCCHHHHHHHHHHHHhh
Confidence            999999999999999887653

>PRK00093 GTP-binding protein Der; Reviewed

Probab=99.86  E-value=2.7e-20  Score=155.95  Aligned_cols=155  Identities=23%  Similarity=0.249  Sum_probs=111.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+|+|.+|+|||||+|+|++.. .+.+...+++|++....   ..+..+.+|||||+.....  .-...+......++
T Consensus         2 ~~I~ivG~~~vGKStL~n~l~~~~-~~~v~~~~~~t~d~~~~~~~~~~~~~~liDT~G~~~~~~--~~~~~~~~~~~~~~   78 (435)
T PRK00093          2 PVVAIVGRPNVGKSTLFNRLTGKR-DAIVADTPGVTRDRIYGEAEWLGREFILIDTGGIEPDDD--GFEKQIREQAELAI   78 (435)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCCCcccceEEEEEECCcEEEEEECCCCCCcch--hHHHHHHHHHHHHH
Confidence            689999999999999999999973 45566677776654322   2245799999999764211  11112223333444


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      ..   +|++|+|+|+.++.+..+..+..++...++|+++|+||+|+...      .....++.   .  ++. ..++++|
T Consensus        79 ~~---ad~il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~~------~~~~~~~~---~--lg~-~~~~~iS  143 (435)
T PRK00093         79 EE---ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPDE------EADAYEFY---S--LGL-GEPYPIS  143 (435)
T ss_pred             Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCccc------hhhHHHHH---h--cCC-CCCEEEE
Confidence            44   89999999999987777777888888889999999999996532      11222221   1  111 2479999


Q ss_pred             cCCCCChHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQ  212 (219)
Q Consensus       197 a~~~~~v~el~~~l~~  212 (219)
                      |++|.|++++++++.+
T Consensus       144 a~~g~gv~~l~~~I~~  159 (435)
T PRK00093        144 AEHGRGIGDLLDAILE  159 (435)
T ss_pred             eeCCCCHHHHHHHHHh
Confidence            9999999999999976

>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2)

Probab=99.86  E-value=5.2e-20  Score=138.96  Aligned_cols=159  Identities=21%  Similarity=0.208  Sum_probs=99.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEee----EE--------------------------------E
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLIN----HF--------------------------------L   82 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~----~~--------------------------------~   82 (219)
                      .+|+++|+.|+|||||++++.+.. .........+.+....    .+                                .
T Consensus         1 ~~i~~~g~~~~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (203)
T cd01888           1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK   80 (203)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccc
Confidence            368999999999999999998751 1111111111111110    00                                0


Q ss_pred             ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCC-CcEEEEEEcc
Q 027757           83 VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNN-IPLTFVFTKC  160 (219)
Q Consensus        83 ~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~-~p~iiv~nK~  160 (219)
                      ....+.+|||||.             ..+...++.....+|++++|+|++++ ........+..+...+ .|+++|+||+
T Consensus        81 ~~~~i~~iDtPG~-------------~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~  147 (203)
T cd01888          81 LVRHVSFVDCPGH-------------EILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKI  147 (203)
T ss_pred             cccEEEEEECCCh-------------HHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEch
Confidence            1146899999994             23455666666668999999999974 2333344454444444 4799999999


Q ss_pred             cccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          161 DKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       161 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      |+.....   .....+++.+.+........+++++||++|.|+++++++|.+.+
T Consensus       148 Dl~~~~~---~~~~~~~i~~~~~~~~~~~~~i~~vSA~~g~gi~~L~~~l~~~l  198 (203)
T cd01888         148 DLVKEEQ---ALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKI  198 (203)
T ss_pred             hccCHHH---HHHHHHHHHHHHhccccCCCcEEEEeCCCCCCHHHHHHHHHHhC
Confidence            9975311   11112222222322222346899999999999999999998754

eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel

>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways

Probab=99.85  E-value=3.7e-20  Score=129.42  Aligned_cols=141  Identities=26%  Similarity=0.296  Sum_probs=96.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC-CCCCCCCcchhhhHHHHHHHHhhc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG-YGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg-~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      .||+++|+.|+|||||+++|.+..  ..+..+.    .+.+   ..  .++|||| +...          ..+.......
T Consensus         2 krimliG~~g~GKTTL~q~L~~~~--~~~~KTq----~i~~---~~--~~IDTPGEyiE~----------~~~y~aLi~t   60 (143)
T PF10662_consen    2 KRIMLIGPSGSGKTTLAQALNGEE--IRYKKTQ----AIEY---YD--NTIDTPGEYIEN----------PRFYHALIVT   60 (143)
T ss_pred             ceEEEECCCCCCHHHHHHHHcCCC--CCcCccc----eeEe---cc--cEEECChhheeC----------HHHHHHHHHH
Confidence            489999999999999999999963  1222221    1111   11  2599999 3222          2233333444


Q ss_pred             cCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecC
Q 027757          119 RESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV  198 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  198 (219)
                      ...||.|++|.|++++.+....   ........|++-|+||+|+...      ..+++...+.+...+-.  .+|.+|+.
T Consensus        61 a~dad~V~ll~dat~~~~~~pP---~fa~~f~~pvIGVITK~Dl~~~------~~~i~~a~~~L~~aG~~--~if~vS~~  129 (143)
T PF10662_consen   61 AQDADVVLLLQDATEPRSVFPP---GFASMFNKPVIGVITKIDLPSD------DANIERAKKWLKNAGVK--EIFEVSAV  129 (143)
T ss_pred             HhhCCEEEEEecCCCCCccCCc---hhhcccCCCEEEEEECccCccc------hhhHHHHHHHHHHcCCC--CeEEEECC
Confidence            5558999999999987654443   3334467899999999999832      14566655555554433  56999999


Q ss_pred             CCCChHHHHHHHHH
Q 027757          199 TGLGRDELLLHMSQ  212 (219)
Q Consensus       199 ~~~~v~el~~~l~~  212 (219)
                      +|.|+++|.++|.+
T Consensus       130 ~~eGi~eL~~~L~~  143 (143)
T PF10662_consen  130 TGEGIEELKDYLEE  143 (143)
T ss_pred             CCcCHHHHHHHHhC
Confidence            99999999999863

Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process

>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE

Probab=99.85  E-value=6.1e-20  Score=152.65  Aligned_cols=157  Identities=25%  Similarity=0.205  Sum_probs=107.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--Ee-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--LV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+|+|++. ..+.+++.+++|++....  .. +..+.++||||+.... +...+.. ......
T Consensus       202 ~g~kVvIvG~~nvGKSSLiN~L~~~-~~aivs~~pgtTrd~~~~~i~~~g~~v~l~DTaG~~~~~-~~ie~~g-i~~~~~  278 (442)
T TIGR00450       202 DGFKLAIVGSPNVGKSSLLNALLKQ-DRAIVSDIKGTTRDVVEGDFELNGILIKLLDTAGIREHA-DFVERLG-IEKSFK  278 (442)
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcEEEEEEEEEEECCEEEEEeeCCCcccch-hHHHHHH-HHHHHH
Confidence            4579999999999999999999996 456677888888765332  22 3478999999975321 1111100 011234


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      +++.   +|++++|+|++++.+..+. .+..+...++|+++|+||+|+...        ..+.+.+.+      ..+++.
T Consensus       279 ~~~~---aD~il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~~--------~~~~~~~~~------~~~~~~  340 (442)
T TIGR00450       279 AIKQ---ADLVIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKIN--------SLEFFVSSK------VLNSSN  340 (442)
T ss_pred             HHhh---CCEEEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCCc--------chhhhhhhc------CCceEE
Confidence            4455   8999999999988775543 344444468899999999998642        112222221      147899


Q ss_pred             eecCCCCChHHHHHHHHHHHhh
Q 027757          195 TSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +||++ .|++++++.+.+.+..
T Consensus       341 vSak~-~gI~~~~~~L~~~i~~  361 (442)
T TIGR00450       341 LSAKQ-LKIKALVDLLTQKINA  361 (442)
T ss_pred             EEEec-CCHHHHHHHHHHHHHH
Confidence            99998 5899998888776654

TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.

>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed

Probab=99.85  E-value=6e-20  Score=161.48  Aligned_cols=160  Identities=21%  Similarity=0.229  Sum_probs=116.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|++......   +..+.+|||||+....  ..-...+......
T Consensus       274 ~~~~V~IvG~~nvGKSSL~n~l~~~-~~~iv~~~pGvT~d~~~~~~~~~~~~~~liDT~G~~~~~--~~~~~~~~~~~~~  350 (712)
T PRK09518        274 AVGVVAIVGRPNVGKSTLVNRILGR-REAVVEDTPGVTRDRVSYDAEWAGTDFKLVDTGGWEADV--EGIDSAIASQAQI  350 (712)
T ss_pred             cCcEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCeeEEEEEEEEEECCEEEEEEeCCCcCCCC--ccHHHHHHHHHHH
Confidence            4578999999999999999999997 45677888888877544332   3479999999975321  1122223333444


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      ++..   +|++|+|+|++++....+..+..++...++|+++|+||+|+....      ....++   +...+   ...++
T Consensus       351 ~~~~---aD~iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~~~------~~~~~~---~~lg~---~~~~~  415 (712)
T PRK09518        351 AVSL---ADAVVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQASE------YDAAEF---WKLGL---GEPYP  415 (712)
T ss_pred             HHHh---CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccccch------hhHHHH---HHcCC---CCeEE
Confidence            5555   899999999998777777777888888999999999999986421      111111   11111   24579


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027757          195 TSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +||++|.|++++++++.+.+.
T Consensus       416 iSA~~g~GI~eLl~~i~~~l~  436 (712)
T PRK09518        416 ISAMHGRGVGDLLDEALDSLK  436 (712)
T ss_pred             EECCCCCCchHHHHHHHHhcc
Confidence            999999999999999987653

>cd00880 Era_like Era (E

Probab=99.85  E-value=9.8e-20  Score=131.35  Aligned_cols=156  Identities=25%  Similarity=0.323  Sum_probs=107.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      ++|++|+|||||++++++. .........+++........    ...+.++||||+........   .+......+++. 
T Consensus         1 i~G~~gsGKstl~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~g~~~~~~~~~---~~~~~~~~~~~~-   75 (163)
T cd00880           1 LFGRTNAGKSSLLNALLGQ-EVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGLGR---EREELARRVLER-   75 (163)
T ss_pred             CcCCCCCCHHHHHHHHhCc-cccccCCCCCcEECCeEEEEEecCCCcEEEEECCCCCccccchh---hHHHHHHHHHHh-
Confidence            5899999999999999997 34444555555544333222    44899999999764322111   111233344555 


Q ss_pred             CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH--HHHHhcCCCCCCeEEeec
Q 027757          120 ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ--QLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~Sa  197 (219)
                        +|++++|+|++++...............+.|+++|+||+|+....       ......  ...........+++++|+
T Consensus        76 --~d~il~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~sa  146 (163)
T cd00880          76 --ADLILFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE-------EEEELLELRLLILLLLLGLPVIAVSA  146 (163)
T ss_pred             --CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh-------hHHHHHHHHHhhcccccCCceEEEee
Confidence              899999999999877765554555566899999999999987642       222221  112223334579999999


Q ss_pred             CCCCChHHHHHHHHHH
Q 027757          198 VTGLGRDELLLHMSQL  213 (219)
Q Consensus       198 ~~~~~v~el~~~l~~~  213 (219)
                      +++.|++++++++.+.
T Consensus       147 ~~~~~v~~l~~~l~~~  162 (163)
T cd00880         147 LTGEGIDELREALIEA  162 (163)
T ss_pred             eccCCHHHHHHHHHhh
Confidence            9999999999999875

coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se

>KOG0086 consensus GTPase Rab4, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=2.5e-20  Score=128.74  Aligned_cols=154  Identities=23%  Similarity=0.230  Sum_probs=116.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+|++++|+.|.|||+|+.+|..+.+....+-+.|.......+.++.   ++.+|||          .||+.|++...
T Consensus         7 DyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDT----------AGQErFRSVtR   76 (214)
T KOG0086|consen    7 DYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDT----------AGQERFRSVTR   76 (214)
T ss_pred             hhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeec----------ccHHHHHHHHH
Confidence            3468999999999999999999999876666666666554444343333   3445555          56999999999


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .||++   +.+.++|+|+++.+++.  ++..|+..      .++-+++++||.|+.+.  +++.-.+..++.+...    
T Consensus        77 sYYRG---AAGAlLVYD~Tsrdsfn--aLtnWL~DaR~lAs~nIvviL~GnKkDL~~~--R~VtflEAs~FaqEne----  145 (214)
T KOG0086|consen   77 SYYRG---AAGALLVYDITSRDSFN--ALTNWLTDARTLASPNIVVILCGNKKDLDPE--REVTFLEASRFAQENE----  145 (214)
T ss_pred             HHhcc---ccceEEEEeccchhhHH--HHHHHHHHHHhhCCCcEEEEEeCChhhcChh--hhhhHHHHHhhhcccc----
Confidence            99999   78899999999988774  44566663      67888999999999875  4454555555554432    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                        ..+.++|+++|.|++|.|-...+.
T Consensus       146 --l~flETSa~TGeNVEEaFl~c~~t  169 (214)
T KOG0086|consen  146 --LMFLETSALTGENVEEAFLKCART  169 (214)
T ss_pred             --eeeeeecccccccHHHHHHHHHHH
Confidence              478999999999999998766553

>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily

Probab=99.85  E-value=3.3e-20  Score=139.17  Aligned_cols=152  Identities=24%  Similarity=0.260  Sum_probs=97.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC--cccccc------------cCCCCeeEEeeE---EEecCeEEEEeCCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK--KELALT------------SKKPGKTQLINH---FLVNKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~--~~~~~~------------~~~~~~t~~~~~---~~~~~~~~liDtpg~~~~~~~  101 (219)
                      ..+|+++|.+|+|||||+++|++.  .+....            ....+++.....   ...+..+.++||||..     
T Consensus         2 ~r~i~ivG~~~~GKTsL~~~l~~~~~~~~~~~~~~~~~~~~~~~e~~~g~t~~~~~~~~~~~~~~~~l~DtpG~~-----   76 (194)
T cd01891           2 IRNIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHA-----   76 (194)
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCCCccCcccccccccchhHHhcccccccceeEEEECCEEEEEEECCCcH-----
Confidence            358999999999999999999973  122211            112333332221   1223478999999953     


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL  181 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  181 (219)
                           .|......+++.   +|++++|+|+++.........+..+...++|+++|+||+|+....    .....+++.+.
T Consensus        77 -----~~~~~~~~~~~~---~d~~ilV~d~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~----~~~~~~~~~~~  144 (194)
T cd01891          77 -----DFGGEVERVLSM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDAR----PEEVVDEVFDL  144 (194)
T ss_pred             -----HHHHHHHHHHHh---cCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECCCCCCCC----HHHHHHHHHHH
Confidence                 345666777777   899999999998544333344455555789999999999986431    11223333333


Q ss_pred             HHhc----CCCCCCeEEeecCCCCChHHHH
Q 027757          182 IREN----YPHHPPWIMTSSVTGLGRDELL  207 (219)
Q Consensus       182 ~~~~----~~~~~~~~~~Sa~~~~~v~el~  207 (219)
                      +...    ....++++++||++|.|+.++.
T Consensus       145 ~~~~~~~~~~~~~~iv~~Sa~~g~~~~~~~  174 (194)
T cd01891         145 FIELGATEEQLDFPVLYASAKNGWASLNLE  174 (194)
T ss_pred             HHHhCCccccCccCEEEeehhccccccccc
Confidence            2211    1124689999999998876553

BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co

>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases

Probab=99.85  E-value=1.3e-20  Score=139.06  Aligned_cols=154  Identities=23%  Similarity=0.285  Sum_probs=106.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ....+|+++|..||||||+++++... ......|+.+...  ..... +..+.++|.+|-          ..++.+++.|
T Consensus        12 ~~~~~ililGl~~sGKTtll~~l~~~-~~~~~~pT~g~~~--~~i~~~~~~~~~~d~gG~----------~~~~~~w~~y   78 (175)
T PF00025_consen   12 KKEIKILILGLDGSGKTTLLNRLKNG-EISETIPTIGFNI--EEIKYKGYSLTIWDLGGQ----------ESFRPLWKSY   78 (175)
T ss_dssp             TSEEEEEEEESTTSSHHHHHHHHHSS-SEEEEEEESSEEE--EEEEETTEEEEEEEESSS----------GGGGGGGGGG
T ss_pred             CcEEEEEEECCCccchHHHHHHhhhc-cccccCccccccc--ceeeeCcEEEEEEecccc----------ccccccceee
Confidence            55789999999999999999999986 3444455544332  22222 347889999883          2335577788


Q ss_pred             hhccCCccEEEEEEeCCCCCCccc--HHHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-cC--C
Q 027757          116 FLNRESLVGVLLLIDASVPPQKID--LDCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE-NY--P  187 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~--~  187 (219)
                      +..   +|++|||+|+++......  ..+...+.   -.++|+++++||+|+.+..       ..+++...+.. .+  .
T Consensus        79 ~~~---~~~iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~~-------~~~~i~~~l~l~~l~~~  148 (175)
T PF00025_consen   79 FQN---ADGIIFVVDSSDPERLQEAKEELKELLNDPELKDIPILILANKQDLPDAM-------SEEEIKEYLGLEKLKNK  148 (175)
T ss_dssp             HTT---ESEEEEEEETTGGGGHHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTSS-------THHHHHHHTTGGGTTSS
T ss_pred             ccc---cceeEEEEecccceeecccccchhhhcchhhcccceEEEEeccccccCcc-------hhhHHHhhhhhhhcccC
Confidence            877   899999999997553322  12222233   2579999999999987541       22333333221 12  2


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ..+.++.+||.+|.|+.|.++||.+.
T Consensus       149 ~~~~v~~~sa~~g~Gv~e~l~WL~~~  174 (175)
T PF00025_consen  149 RPWSVFSCSAKTGEGVDEGLEWLIEQ  174 (175)
T ss_dssp             SCEEEEEEBTTTTBTHHHHHHHHHHH
T ss_pred             CceEEEeeeccCCcCHHHHHHHHHhc
Confidence            45678999999999999999999875

This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....

>PRK11058 GTPase HflX; Provisional

Probab=99.84  E-value=1.4e-19  Score=149.67  Aligned_cols=159  Identities=18%  Similarity=0.195  Sum_probs=102.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-c-CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-N-KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ..++|+++|.+|+|||||+|+|++... . ..+.+++|.+...  ... + ..+.++||||+... .+......|...  
T Consensus       196 ~~p~ValVG~~NaGKSSLlN~Lt~~~~-~-v~~~~~tTld~~~~~i~l~~~~~~~l~DTaG~~r~-lp~~lve~f~~t--  270 (426)
T PRK11058        196 DVPTVSLVGYTNAGKSTLFNRITEARV-Y-AADQLFATLDPTLRRIDVADVGETVLADTVGFIRH-LPHDLVAAFKAT--  270 (426)
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCce-e-eccCCCCCcCCceEEEEeCCCCeEEEEecCccccc-CCHHHHHHHHHH--
Confidence            458999999999999999999999742 2 4444455544322  222 2 37899999997321 111112223222  


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                        +.....+|++|+|+|++++.+....    ..+..+...++|+++|+||+|+.+...     ....    ...  .+ .
T Consensus       271 --l~~~~~ADlIL~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~~~~-----~~~~----~~~--~~-~  336 (426)
T PRK11058        271 --LQETRQATLLLHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFE-----PRID----RDE--EN-K  336 (426)
T ss_pred             --HHHhhcCCEEEEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCCchh-----HHHH----HHh--cC-C
Confidence              2223448999999999998765543    233444445799999999999864210     1111    111  11 1


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..++++||++|.|+++++++|.+.+.
T Consensus       337 ~~~v~ISAktG~GIdeL~e~I~~~l~  362 (426)
T PRK11058        337 PIRVWLSAQTGAGIPLLFQALTERLS  362 (426)
T ss_pred             CceEEEeCCCCCCHHHHHHHHHHHhh
Confidence            23589999999999999999988764

>CHL00189 infB translation initiation factor 2; Provisional

Probab=99.84  E-value=1.3e-19  Score=157.39  Aligned_cols=158  Identities=25%  Similarity=0.319  Sum_probs=111.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE----EEe---cCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH----FLV---NKSWYIVDLPGYGFAKAPDVTRMDWS  109 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~----~~~---~~~~~liDtpg~~~~~~~~~~~~~~~  109 (219)
                      ...+.|+|+|.+++|||||+++|.+..+..  ....+.|.++..    +..   +..+.+|||||+          ..|.
T Consensus       242 ~r~p~V~IvGhvdvGKTSLld~L~~~~~~~--~e~~GiTq~i~~~~v~~~~~~~~~kItfiDTPGh----------e~F~  309 (742)
T CHL00189        242 NRPPIVTILGHVDHGKTTLLDKIRKTQIAQ--KEAGGITQKIGAYEVEFEYKDENQKIVFLDTPGH----------EAFS  309 (742)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHhccCcc--ccCCccccccceEEEEEEecCCceEEEEEECCcH----------HHHH
Confidence            457899999999999999999999864322  222333333221    111   247999999995          3345


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH---HhcC
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI---RENY  186 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~---~~~~  186 (219)
                      .++..++..   +|++|+|+|+.++...+..+.+..+...++|+++++||+|+....     ...+.+.....   ...+
T Consensus       310 ~mr~rg~~~---aDiaILVVDA~dGv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~~-----~e~v~~eL~~~~ll~e~~  381 (742)
T CHL00189        310 SMRSRGANV---TDIAILIIAADDGVKPQTIEAINYIQAANVPIIVAINKIDKANAN-----TERIKQQLAKYNLIPEKW  381 (742)
T ss_pred             HHHHHHHHH---CCEEEEEEECcCCCChhhHHHHHHHHhcCceEEEEEECCCccccC-----HHHHHHHHHHhccchHhh
Confidence            555555555   899999999998877777777888888899999999999987531     11111111111   1122


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +..++++++||++|.|+++++++|....
T Consensus       382 g~~vpvv~VSAktG~GIdeLle~I~~l~  409 (742)
T CHL00189        382 GGDTPMIPISASQGTNIDKLLETILLLA  409 (742)
T ss_pred             CCCceEEEEECCCCCCHHHHHHhhhhhh
Confidence            3347899999999999999999998754

>TIGR00487 IF-2 translation initiation factor IF-2

Probab=99.84  E-value=2.3e-19  Score=153.47  Aligned_cols=158  Identities=22%  Similarity=0.281  Sum_probs=110.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--e-cC-eEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--V-NK-SWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~-~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      ....++|+++|.+++|||||+++|.+..+..  ....+.|.+.....  . +. .+.+|||||+.          .|..+
T Consensus        84 ~~r~p~V~I~Ghvd~GKTSLl~~l~~~~v~~--~e~~GIT~~ig~~~v~~~~~~~i~~iDTPGhe----------~F~~~  151 (587)
T TIGR00487        84 VERPPVVTIMGHVDHGKTSLLDSIRKTKVAQ--GEAGGITQHIGAYHVENEDGKMITFLDTPGHE----------AFTSM  151 (587)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccc--ccCCceeecceEEEEEECCCcEEEEEECCCCc----------chhhH
Confidence            3456899999999999999999999874332  22344555543322  2 33 79999999963          22333


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH---hcCCC
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR---ENYPH  188 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~  188 (219)
                      +...   ...+|++|+|+|++++...+..+.+..+...++|+++++||+|+....     .+.........+   ..++.
T Consensus       152 r~rg---a~~aDiaILVVda~dgv~~qT~e~i~~~~~~~vPiIVviNKiDl~~~~-----~e~v~~~L~~~g~~~~~~~~  223 (587)
T TIGR00487       152 RARG---AKVTDIVVLVVAADDGVMPQTIEAISHAKAANVPIIVAINKIDKPEAN-----PDRVKQELSEYGLVPEDWGG  223 (587)
T ss_pred             HHhh---hccCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcccccCC-----HHHHHHHHHHhhhhHHhcCC
Confidence            3333   344899999999998777777777777777899999999999986421     122222222211   12333


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ..+++++||++|.|++++++++...
T Consensus       224 ~~~~v~iSAktGeGI~eLl~~I~~~  248 (587)
T TIGR00487       224 DTIFVPVSALTGDGIDELLDMILLQ  248 (587)
T ss_pred             CceEEEEECCCCCChHHHHHhhhhh
Confidence            4689999999999999999998653

This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.

>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2

Probab=99.84  E-value=1.8e-19  Score=153.95  Aligned_cols=162  Identities=20%  Similarity=0.242  Sum_probs=107.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---------------------cCeEEEEeCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---------------------NKSWYIVDLPGYGF   97 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~~liDtpg~~~   97 (219)
                      .|-|+++|.+++|||||+|+|.+..+...  ...++|.++.....                     ...+.+|||||+  
T Consensus         4 ~piV~IiG~~d~GKTSLln~l~~~~v~~~--e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~--   79 (590)
T TIGR00491         4 SPIVSVLGHVDHGKTTLLDKIRGSAVAKR--EAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGH--   79 (590)
T ss_pred             CCEEEEECCCCCCHHHHHHHHhccccccc--cCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCc--
Confidence            57899999999999999999998743221  11123332211111                     013889999995  


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC---Cc---
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR---RP---  171 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~---~~---  171 (219)
                              +.|..++..+++.   +|++++|+|++++...+..+.+.++...++|+++++||+|+.+.-...   .+   
T Consensus        80 --------e~f~~l~~~~~~~---aD~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~~~~~~~~~~f~e~  148 (590)
T TIGR00491        80 --------EAFTNLRKRGGAL---ADLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIPGWRSHEGRPFMES  148 (590)
T ss_pred             --------HhHHHHHHHHHhh---CCEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccchhhhccCchHHHH
Confidence                    2344555556655   899999999998777777777777777899999999999986421000   00   


Q ss_pred             ------------hHhHHHHHHHHHh------------cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          172 ------------DENIKSFQQLIRE------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       172 ------------~~~~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                                  .+.+.....++..            .++...+++++||++|.|+++|+++|....+
T Consensus       149 sak~~~~v~~~~~~~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~  216 (590)
T TIGR00491       149 FSKQEIQVQQNLDTKVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ  216 (590)
T ss_pred             HHhhhHHHHHHHHHHHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence                        0001111112221            1344579999999999999999999976544

This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.

>PTZ00132 GTP-binding nuclear protein Ran; Provisional

Probab=99.84  E-value=3.9e-19  Score=135.44  Aligned_cols=156  Identities=15%  Similarity=0.233  Sum_probs=107.5

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      .....+||+++|++|+|||||+++++...+...+.++.+.......+..+   ..+.++||+|.          ..|..+
T Consensus         5 ~~~~~~kv~liG~~g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~i~~~Dt~g~----------~~~~~~   74 (215)
T PTZ00132          5 DEVPEFKLILVGDGGVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTNCGPICFNVWDTAGQ----------EKFGGL   74 (215)
T ss_pred             cCCCCceEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCc----------hhhhhh
Confidence            34557899999999999999998776655666666666655543333222   26788999883          334556


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      +..++..   ++++++|+|+++..+....  ..|+.     ..++|+++++||+|+.+..   ...+ ...+.+.     
T Consensus        75 ~~~~~~~---~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~i~lv~nK~Dl~~~~---~~~~-~~~~~~~-----  140 (215)
T PTZ00132         75 RDGYYIK---GQCAIIMFDVTSRITYKNV--PNWHRDIVRVCENIPIVLVGNKVDVKDRQ---VKAR-QITFHRK-----  140 (215)
T ss_pred             hHHHhcc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECccCcccc---CCHH-HHHHHHH-----
Confidence            6677766   7999999999987765443  22322     2578999999999986421   1111 1122221     


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       ....++++|++++.|+++.+.+|.+.+.
T Consensus       141 -~~~~~~e~Sa~~~~~v~~~f~~ia~~l~  168 (215)
T PTZ00132        141 -KNLQYYDISAKSNYNFEKPFLWLARRLT  168 (215)
T ss_pred             -cCCEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence             1257899999999999999999987653

>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1

Probab=99.84  E-value=4.4e-20  Score=136.00  Aligned_cols=154  Identities=23%  Similarity=0.248  Sum_probs=94.8

Q ss_pred             EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      ++|++|+|||||+|+|++...  .....+++|....  ....  +..+.++||||+.......  +    .+...++...
T Consensus         1 iiG~~~~GKStll~~l~~~~~--~~~~~~~~t~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~--~----~~~~~~~~~~   72 (176)
T cd01881           1 LVGLPNVGKSTLLNALTNAKP--KVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEG--R----GLGNQFLAHI   72 (176)
T ss_pred             CCCCCCCcHHHHHHHHhcCCc--cccCCCceeecCcceEEEcCCCCeEEEEeccccchhhhcC--C----CccHHHHHHH
Confidence            589999999999999999742  3444555554432  2222  4578999999974321111  1    1111222222


Q ss_pred             CCccEEEEEEeCCCCC------CcccHH-HHHHhc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757          120 ESLVGVLLLIDASVPP------QKIDLD-CANWLG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI  182 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~------~~~~~~-~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  182 (219)
                      +.+|++++|+|+.++.      +..+.. ....+.          ..++|+++|+||+|+....       ........ 
T Consensus        73 ~~~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~-------~~~~~~~~-  144 (176)
T cd01881          73 RRADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE-------ELEEELVR-  144 (176)
T ss_pred             hccCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh-------HHHHHHHH-
Confidence            3389999999999873      222211 111111          1378999999999997542       12221111 


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ........+++++||+++.|++++++++.+.
T Consensus       145 ~~~~~~~~~~~~~Sa~~~~gl~~l~~~l~~~  175 (176)
T cd01881         145 ELALEEGAEVVPISAKTEEGLDELIRAIYEL  175 (176)
T ss_pred             HHhcCCCCCEEEEehhhhcCHHHHHHHHHhh
Confidence            1112234679999999999999999998764

Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to

>KOG1423 consensus Ras-like GTPase ERA [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=99.84  E-value=1.1e-19  Score=139.43  Aligned_cols=177  Identities=21%  Similarity=0.215  Sum_probs=117.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      .....|+++|+||+|||||.|.++|.+ ...++....||+...  .+. ...+++|.||||+...... .......++..
T Consensus        70 ~k~L~vavIG~PNvGKStLtN~mig~k-v~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~-r~~~l~~s~lq  147 (379)
T KOG1423|consen   70 QKSLYVAVIGAPNVGKSTLTNQMIGQK-VSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMH-RRHHLMMSVLQ  147 (379)
T ss_pred             ceEEEEEEEcCCCcchhhhhhHhhCCc-cccccccccceeeeeeEEEecCceEEEEecCCcccccchh-hhHHHHHHhhh
Confidence            446789999999999999999999984 666666666666532  222 3448999999997533221 12222234445


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-CCCcEEEEEEcccccccccCCC------chHh----HHHHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-NNIPLTFVFTKCDKMKVAKGRR------PDEN----IKSFQQLI  182 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~------~~~~----~~~~~~~~  182 (219)
                      .+....+.||.+++|+|+++.-....-.++..+++ .++|.++|+||+|........-      ....    ..++.+.+
T Consensus       148 ~~~~a~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f  227 (379)
T KOG1423|consen  148 NPRDAAQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKF  227 (379)
T ss_pred             CHHHHHhhCCEEEEEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhhhHHhhhHHhccccccchhhhhHHHHh
Confidence            66666777999999999997545555556666665 6799999999999765421000      0000    11112211


Q ss_pred             Hh-----------cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          183 RE-----------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       183 ~~-----------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..           .+....++|++||++|.|++++.+||...+.
T Consensus       228 ~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~  271 (379)
T KOG1423|consen  228 TDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP  271 (379)
T ss_pred             ccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence            11           0112346999999999999999999977543

>KOG0395 consensus Ras-related GTPase [General function prediction only]

Probab=99.83  E-value=1.2e-19  Score=135.41  Aligned_cols=158  Identities=19%  Similarity=0.236  Sum_probs=122.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC--eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK--SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...||+++|.+|+|||+|..+|.+..|...+.++...+........+.  .+.++||+|          ++.|..+.+.+
T Consensus         2 ~~~kvvvlG~~gVGKSal~~qf~~~~f~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g----------~~~~~~~~~~~   71 (196)
T KOG0395|consen    2 REYKVVVLGAGGVGKSALTIQFLTGRFVEDYDPTIEDSYRKELTVDGEVCMLEILDTAG----------QEEFSAMRDLY   71 (196)
T ss_pred             CceEEEEECCCCCCcchheeeecccccccccCCCccccceEEEEECCEEEEEEEEcCCC----------cccChHHHHHh
Confidence            357999999999999999999999989999888888554433322222  466888887          55567788888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   .|++++|+++++..++.... +.+.+    .....|+++|+||+|+...  +.+..++...+...+.      +
T Consensus        72 ~~~---~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~--R~V~~eeg~~la~~~~------~  140 (196)
T KOG0395|consen   72 IRN---GDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERE--RQVSEEEGKALARSWG------C  140 (196)
T ss_pred             hcc---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCCEEEEEEcccchhc--cccCHHHHHHHHHhcC------C
Confidence            888   89999999999998887742 22333    1256899999999999875  6666677666644433      6


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+...+++++|..|.+....
T Consensus       141 ~f~E~Sak~~~~v~~~F~~L~r~~~~  166 (196)
T KOG0395|consen  141 AFIETSAKLNYNVDEVFYELVREIRL  166 (196)
T ss_pred             cEEEeeccCCcCHHHHHHHHHHHHHh
Confidence            79999999999999999999886654

>PRK09554 feoB ferrous iron transport protein B; Reviewed

Probab=99.83  E-value=3.7e-19  Score=156.33  Aligned_cols=162  Identities=20%  Similarity=0.179  Sum_probs=112.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..+|+++|++|+|||||+|+|++..  ..+.+.+++|.+.....   .+.++.++||||+............-+.+...+
T Consensus         3 ~~~IaLvG~pNvGKSTLfN~Ltg~~--~~vgn~pGvTve~k~g~~~~~~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~   80 (772)
T PRK09554          3 KLTIGLIGNPNSGKTTLFNQLTGAR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (772)
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCceEeeEEEEEEcCceEEEEEECCCccccccccccccHHHHHHHHH
Confidence            4689999999999999999999974  36778888887654332   234799999999653221111000012233444


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      +.. ..+|++++|+|+++....  ..+..++.+.++|+++++||+|+.+...   ...+.+++.+.++      ++++++
T Consensus        81 l~~-~~aD~vI~VvDat~ler~--l~l~~ql~e~giPvIvVlNK~Dl~~~~~---i~id~~~L~~~LG------~pVvpi  148 (772)
T PRK09554         81 ILS-GDADLLINVVDASNLERN--LYLTLQLLELGIPCIVALNMLDIAEKQN---IRIDIDALSARLG------CPVIPL  148 (772)
T ss_pred             Hhc-cCCCEEEEEecCCcchhh--HHHHHHHHHcCCCEEEEEEchhhhhccC---cHHHHHHHHHHhC------CCEEEE
Confidence            432 337999999999985443  4445666778999999999999864321   1233444444433      689999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q 027757          196 SSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~  214 (219)
                      |++++.|++++++.+.+..
T Consensus       149 SA~~g~GIdeL~~~I~~~~  167 (772)
T PRK09554        149 VSTRGRGIEALKLAIDRHQ  167 (772)
T ss_pred             EeecCCCHHHHHHHHHHhh
Confidence            9999999999999998764

>cd01884 EF_Tu EF-Tu subfamily

Probab=99.83  E-value=3.3e-19  Score=133.35  Aligned_cols=149  Identities=19%  Similarity=0.266  Sum_probs=99.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccc--------------ccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKEL--------------ALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~  101 (219)
                      ..+|+++|..++|||||+++|++....              .......+.|.......   .+.++.++||||+.     
T Consensus         2 ~~ni~iiGh~~~GKTTL~~~Ll~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~-----   76 (195)
T cd01884           2 HVNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHA-----   76 (195)
T ss_pred             cEEEEEECCCCCCHHHHHHHHHHHHHhcccccccccccccCChhhhhcCccEEeeeeEecCCCeEEEEEECcCHH-----
Confidence            468999999999999999999864100              00111334444432222   23478999999963     


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhH-HHHH
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENI-KSFQ  179 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~-~~~~  179 (219)
                              .+.....+....+|++++|+|+..+...++.+.+..+...++| +++++||+|+...+..   .+.. +++.
T Consensus        77 --------~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~~~---~~~~~~~i~  145 (195)
T cd01884          77 --------DYIKNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVDDEEL---LELVEMEVR  145 (195)
T ss_pred             --------HHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCcEEEEEeCCCCCCcHHH---HHHHHHHHH
Confidence                    2444445555669999999999988777777888888888887 7899999998642211   1112 1233


Q ss_pred             HHHHhcC--CCCCCeEEeecCCCCCh
Q 027757          180 QLIRENY--PHHPPWIMTSSVTGLGR  203 (219)
Q Consensus       180 ~~~~~~~--~~~~~~~~~Sa~~~~~v  203 (219)
                      +.+....  ...++++++||++|.|.
T Consensus       146 ~~l~~~g~~~~~v~iipiSa~~g~n~  171 (195)
T cd01884         146 ELLSKYGFDGDNTPIVRGSALKALEG  171 (195)
T ss_pred             HHHHHhcccccCCeEEEeeCccccCC
Confidence            3333221  13578999999999985

This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>cd04165 GTPBP1_like GTPBP1-like

Probab=99.83  E-value=2.6e-19  Score=136.60  Aligned_cols=156  Identities=21%  Similarity=0.232  Sum_probs=102.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccccccc------------CCCCeeEE------------------------e--eEE-
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTS------------KKPGKTQL------------------------I--NHF-   81 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~------------~~~~~t~~------------------------~--~~~-   81 (219)
                      ||+++|+.++|||||+++|....+.....            -..|.+..                        .  ..+ 
T Consensus         1 ~v~~~G~~~~GKttl~~~~~~~~~~~~~~~~~~~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~   80 (224)
T cd04165           1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE   80 (224)
T ss_pred             CEEEECCCCCCHHHHHHHHHhCCcCCCCCeEEeehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeee
Confidence            68999999999999999999643211000            00010000                        0  001 


Q ss_pred             EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc--CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757           82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR--ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK  159 (219)
Q Consensus        82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  159 (219)
                      ..+..+.++||||+.             .+.+..++..  ..+|++++|+|+..+....+.+.+.++...++|+++|+||
T Consensus        81 ~~~~~i~liDtpG~~-------------~~~~~~~~~~~~~~~D~~llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK  147 (224)
T cd04165          81 KSSKLVTFIDLAGHE-------------RYLKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTK  147 (224)
T ss_pred             eCCcEEEEEECCCcH-------------HHHHHHHHhhcccCCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEC
Confidence            123468999999963             2222233332  2479999999999988888888899999999999999999


Q ss_pred             ccccccccCCCchHhHHHHHHHHHh-----------------------cCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          160 CDKMKVAKGRRPDENIKSFQQLIRE-----------------------NYPHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       160 ~D~~~~~~~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      +|+.+...   .....+++.+.+..                       .+...+|+|.+||.+|.|+++|.+.|..
T Consensus       148 ~D~~~~~~---~~~~~~~l~~~L~~~g~~~~p~~~~~~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~  220 (224)
T cd04165         148 IDLAPANI---LQETLKDLKRILKVPGVRKLPVPVKSDDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL  220 (224)
T ss_pred             ccccCHHH---HHHHHHHHHHHhcCCCccccceeeecccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence            99865321   11222222222221                       1223468999999999999999998865

Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and

>COG1084 Predicted GTPase [General function prediction only]

Probab=99.83  E-value=5.5e-19  Score=137.09  Aligned_cols=163  Identities=20%  Similarity=0.173  Sum_probs=122.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cC-eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NK-SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+.|+|.|.||+|||||++.+++.  .+.+.+++.||+.+...+.  ++ .+.++||||+.+......++.+..++..
T Consensus       166 p~~pTivVaG~PNVGKSSlv~~lT~A--kpEvA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~A  243 (346)
T COG1084         166 PDLPTIVVAGYPNVGKSSLVRKLTTA--KPEVAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPLEERNEIERQAILA  243 (346)
T ss_pred             CCCCeEEEecCCCCcHHHHHHHHhcC--CCccCCCCccccceeEeeeecCCceEEEecCCcccCCChHHhcHHHHHHHHH
Confidence            46789999999999999999999997  4889999999987654443  33 7999999999888888888888778777


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH---HHHHHhcc-CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL---DCANWLGR-NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~---~~~~~~~~-~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ..+..    ++|+|++|++......-.   .++..++. .+.|+++|+||+|..+.       +..++....+.....  
T Consensus       244 L~hl~----~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~-------e~~~~~~~~~~~~~~--  310 (346)
T COG1084         244 LRHLA----GVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADE-------EKLEEIEASVLEEGG--  310 (346)
T ss_pred             HHHhc----CeEEEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccch-------hHHHHHHHHHHhhcc--
Confidence            65544    889999999974333322   33333333 66899999999998864       344554444444333  


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .....+++..+.+++.+.+.+...+
T Consensus       311 ~~~~~~~~~~~~~~d~~~~~v~~~a  335 (346)
T COG1084         311 EEPLKISATKGCGLDKLREEVRKTA  335 (346)
T ss_pred             ccccceeeeehhhHHHHHHHHHHHh
Confidence            2457888888899998887776653

>TIGR00475 selB selenocysteine-specific elongation factor SelB

Probab=99.83  E-value=3.3e-19  Score=153.03  Aligned_cols=161  Identities=23%  Similarity=0.273  Sum_probs=107.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..|+++|.+++|||||+++|++.. .........+.|.+..+  +.. +..+.+||+||+.             .+...+
T Consensus         1 ~~I~iiG~~d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~~~~v~~iDtPGhe-------------~f~~~~   67 (581)
T TIGR00475         1 MIIATAGHVDHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLPDYRLGFIDVPGHE-------------KFISNA   67 (581)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeCCEEEEEEECCCHH-------------HHHHHH
Confidence            368999999999999999999852 01111223445544332  222 2478999999952             233344


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhc-CCCCCCeE
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YPHHPPWI  193 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  193 (219)
                      ......+|++++|+|++++...+..+.+.++...++| +++|+||+|+.+.+..+...+++.++   +... +...++++
T Consensus        68 ~~g~~~aD~aILVVDa~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~~~~~~~~ei~~~---l~~~~~~~~~~ii  144 (581)
T TIGR00475        68 IAGGGGIDAALLVVDADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEEEIKRTEMFMKQI---LNSYIFLKNAKIF  144 (581)
T ss_pred             HhhhccCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHHHHHHHHHHHHHH---HHHhCCCCCCcEE
Confidence            4444458999999999987666666666677777888 99999999997642111111112222   2221 11247899


Q ss_pred             EeecCCCCChHHHHHHHHHHHhh
Q 027757          194 MTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++||++|.|++++++++.+....
T Consensus       145 ~vSA~tG~GI~eL~~~L~~l~~~  167 (581)
T TIGR00475       145 KTSAKTGQGIGELKKELKNLLES  167 (581)
T ss_pred             EEeCCCCCCchhHHHHHHHHHHh
Confidence            99999999999999999887654

In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.

>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]

Probab=99.83  E-value=3.3e-19  Score=150.26  Aligned_cols=158  Identities=24%  Similarity=0.300  Sum_probs=122.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCC-CCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGY-GFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~-~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+|+++|+||+|||||+|+|+|.  ...+.+-+|+|.+..+...   +.++.++|+||. .....+.+     +.....
T Consensus         3 ~~~valvGNPNvGKTtlFN~LTG~--~q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~D-----E~Var~   75 (653)
T COG0370           3 KLTVALVGNPNVGKTTLFNALTGA--NQKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSED-----EKVARD   75 (653)
T ss_pred             cceEEEecCCCccHHHHHHHHhcc--CceecCCCCeeEEEEEEEEEecCceEEEEeCCCcCCCCCCCch-----HHHHHH
Confidence            457999999999999999999996  5889999999987654433   346899999994 44444333     445566


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      |+.. ..+|++|-|+|+++-+..  +.+.-++.+.+.|+++++|++|.....+...   +.+++.+.++      +|+++
T Consensus        76 ~ll~-~~~D~ivnVvDAtnLeRn--LyltlQLlE~g~p~ilaLNm~D~A~~~Gi~I---D~~~L~~~LG------vPVv~  143 (653)
T COG0370          76 FLLE-GKPDLIVNVVDATNLERN--LYLTLQLLELGIPMILALNMIDEAKKRGIRI---DIEKLSKLLG------VPVVP  143 (653)
T ss_pred             HHhc-CCCCEEEEEcccchHHHH--HHHHHHHHHcCCCeEEEeccHhhHHhcCCcc---cHHHHHHHhC------CCEEE
Confidence            6654 336999999999986543  5556677789999999999999887655544   3445555555      79999


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027757          195 TSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +||++|.|++|+++.+.+...
T Consensus       144 tvA~~g~G~~~l~~~i~~~~~  164 (653)
T COG0370         144 TVAKRGEGLEELKRAIIELAE  164 (653)
T ss_pred             EEeecCCCHHHHHHHHHHhcc
Confidence            999999999999999877544

>PRK05306 infB translation initiation factor IF-2; Validated

Probab=99.83  E-value=1.5e-19  Score=158.15  Aligned_cols=158  Identities=22%  Similarity=0.282  Sum_probs=110.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ....+.|+|+|..++|||||+++|.+..+..  ....+.|.++..+..   +..+.+|||||+..          |..++
T Consensus       287 ~~R~pvV~ImGhvd~GKTSLl~~Lr~~~v~~--~e~~GIT~~iga~~v~~~~~~ItfiDTPGhe~----------F~~m~  354 (787)
T PRK05306        287 VPRPPVVTIMGHVDHGKTSLLDAIRKTNVAA--GEAGGITQHIGAYQVETNGGKITFLDTPGHEA----------FTAMR  354 (787)
T ss_pred             ccCCCEEEEECCCCCCHHHHHHHHHhCCccc--cccCceeeeccEEEEEECCEEEEEEECCCCcc----------chhHH
Confidence            4567899999999999999999998864332  223455555443322   35799999999642          22333


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH---HHhcCCCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL---IRENYPHH  189 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  189 (219)
                      ...   ...+|++|+|+|+.++...+..+.+..+...++|+++++||+|+....     ...+...+..   +...++..
T Consensus       355 ~rg---a~~aDiaILVVdAddGv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a~-----~e~V~~eL~~~~~~~e~~g~~  426 (787)
T PRK05306        355 ARG---AQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGAN-----PDRVKQELSEYGLVPEEWGGD  426 (787)
T ss_pred             Hhh---hhhCCEEEEEEECCCCCCHhHHHHHHHHHhcCCcEEEEEECccccccC-----HHHHHHHHHHhcccHHHhCCC
Confidence            333   344899999999998877777777788778899999999999996431     1111111111   11123345


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ++++++||++|.|+++++++|...
T Consensus       427 vp~vpvSAktG~GI~eLle~I~~~  450 (787)
T PRK05306        427 TIFVPVSAKTGEGIDELLEAILLQ  450 (787)
T ss_pred             ceEEEEeCCCCCCchHHHHhhhhh
Confidence            789999999999999999998754

>KOG1145 consensus Mitochondrial translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.82  E-value=7.5e-19  Score=143.93  Aligned_cols=171  Identities=22%  Similarity=0.231  Sum_probs=134.9

Q ss_pred             eeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCC
Q 027757           24 FVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAK   99 (219)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~   99 (219)
                      ..++...........+|-|.|||....|||||+.+|-+...  ...-.-|.|.+++.+.+    +..++|+||||+    
T Consensus       138 ~~~~~~a~p~~l~~RpPVVTiMGHVDHGKTTLLD~lRks~V--AA~E~GGITQhIGAF~V~~p~G~~iTFLDTPGH----  211 (683)
T KOG1145|consen  138 VAPQPEADPKLLEPRPPVVTIMGHVDHGKTTLLDALRKSSV--AAGEAGGITQHIGAFTVTLPSGKSITFLDTPGH----  211 (683)
T ss_pred             cccCCccCHhhcCCCCCeEEEeecccCChhhHHHHHhhCce--ehhhcCCccceeceEEEecCCCCEEEEecCCcH----
Confidence            33333444444456789999999999999999999998742  23445567888766654    347999999996    


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                               ..|..+.-|+++.+|.+++|+.+.++...+..+.++..+..+.|+++.+||||....        ..+...
T Consensus       212 ---------aAF~aMRaRGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a--------~pekv~  274 (683)
T KOG1145|consen  212 ---------AAFSAMRARGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGA--------NPEKVK  274 (683)
T ss_pred             ---------HHHHHHHhccCccccEEEEEEEccCCccHhHHHHHHHHHhcCCCEEEEEeccCCCCC--------CHHHHH
Confidence                     466777778888899999999999999999999999999999999999999997643        344444


Q ss_pred             HHHHh------cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          180 QLIRE------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       180 ~~~~~------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++..      .++.+.+++++||++|.|++.|.+.+.-++..|
T Consensus       275 ~eL~~~gi~~E~~GGdVQvipiSAl~g~nl~~L~eaill~Ae~m  318 (683)
T KOG1145|consen  275 RELLSQGIVVEDLGGDVQVIPISALTGENLDLLEEAILLLAEVM  318 (683)
T ss_pred             HHHHHcCccHHHcCCceeEEEeecccCCChHHHHHHHHHHHHHh
Confidence            44433      456678999999999999999999988776654

>cd04102 RabL3 RabL3 (Rab-like3) subfamily

Probab=99.82  E-value=2.5e-18  Score=129.16  Aligned_cols=157  Identities=20%  Similarity=0.243  Sum_probs=103.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--------CeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--------KSWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------~~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      +||+++|.+|+|||||++++++..+.....++.+.+........+        ..+.+|||+|          ++.|..+
T Consensus         1 vKIvlvGd~gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG----------~e~~~~l   70 (202)
T cd04102           1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGG----------SESVKST   70 (202)
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCC----------chhHHHH
Confidence            489999999999999999999987666666666654443333221        2467888876          4567888


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------------------------CCCcEEEEEEcccccccc
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------------------------NNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------------------------~~~p~iiv~nK~D~~~~~  166 (219)
                      ...+++.   +|++|+|+|++++.++....  .|+.+                         .++|+++|+||+|+.+..
T Consensus        71 ~~~~yr~---ad~iIlVyDvtn~~Sf~~l~--~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~~r  145 (202)
T cd04102          71 RAVFYNQ---VNGIILVHDLTNRKSSQNLQ--RWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEK  145 (202)
T ss_pred             HHHHhCc---CCEEEEEEECcChHHHHHHH--HHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchhhc
Confidence            8999998   99999999999988876542  33221                         368999999999997642


Q ss_pred             cCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC-------ChHHHHHHHHHHHh
Q 027757          167 KGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL-------GRDELLLHMSQLRN  215 (219)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-------~v~el~~~l~~~~~  215 (219)
                        .+..+....-...+...++  .+.++.++.+..       +-..|.+.+.+..+
T Consensus       146 --~~~~~~~~~~~~~ia~~~~--~~~i~~~c~~~~~~~~~~~~~~~~~~~~~~~~~  197 (202)
T cd04102         146 --ESSGNLVLTARGFVAEQGN--AEEINLNCTNGRLLAAGSSDAVKLSRFFDKVIE  197 (202)
T ss_pred             --ccchHHHhhHhhhHHHhcC--CceEEEecCCcccccCCCccHHHHHHHHHHHHH
Confidence              2222222222223333333  467777777542       44445444444443

RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.

>TIGR00231 small_GTP small GTP-binding protein domain

Probab=99.81  E-value=1.1e-18  Score=125.77  Aligned_cols=148  Identities=23%  Similarity=0.303  Sum_probs=92.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      .+||+++|.+|+|||||++++++..  ......++++.....  +..+   ..+.++|+||..          .+..+..
T Consensus         1 ~~ki~~~G~~~~GKstl~~~l~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~   68 (161)
T TIGR00231         1 EIKIVIVGDPNVGKSTLLNRLLGNK--FITEYKPGTTRNYVTTVIEEDGKTYKFNLLDTAGQE----------DYRAIRR   68 (161)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhCCC--CcCcCCCCceeeeeEEEEEECCEEEEEEEEECCCcc----------cchHHHH
Confidence            3699999999999999999999975  333333444443322  3333   357889999942          2233444


Q ss_pred             HHhhccCCccEEEEEEeCCCC-CCccc------HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          114 GYFLNRESLVGVLLLIDASVP-PQKID------LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~-~~~~~------~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      .++..   ++.++.++|.... .+..+      ..+.... ..+.|+++++||+|+....       ........+.. .
T Consensus        69 ~~~~~---~~~~i~~~d~~~~v~~~~~~~~~~~~~~~~~~-~~~~p~ivv~nK~D~~~~~-------~~~~~~~~~~~-~  136 (161)
T TIGR00231        69 LYYRA---VESSLRVFDIVILVLDVEEILEKQTKEIIHHA-ESNVPIILVGNKIDLRDAK-------LKTHVAFLFAK-L  136 (161)
T ss_pred             HHHhh---hhEEEEEEEEeeeehhhhhHhHHHHHHHHHhc-ccCCcEEEEEEcccCCcch-------hhHHHHHHHhh-c
Confidence            44444   5666777776654 22111      1111222 2378999999999997642       11122222222 2


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHH
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~  211 (219)
                      . ..+++++||+++.|+.+++++|.
T Consensus       137 ~-~~~~~~~sa~~~~gv~~~~~~l~  160 (161)
T TIGR00231       137 N-GEPIIPLSAETGKNIDSAFKIVE  160 (161)
T ss_pred             c-CCceEEeecCCCCCHHHHHHHhh
Confidence            2 25799999999999999999874

This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.

>KOG0088 consensus GTPase Rab21, small G protein superfamily [General function prediction only]

Probab=99.81  E-value=4.1e-20  Score=128.41  Aligned_cols=159  Identities=19%  Similarity=0.204  Sum_probs=117.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +...+|++++|..=+|||||+-+++.++|..+...+..-..-      +.++.+-| .-.....|++.||+.|+.+.+-|
T Consensus        10 ~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~------~kk~n~ed-~ra~L~IWDTAGQErfHALGPIY   82 (218)
T KOG0088|consen   10 KSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQ------NKKVNVED-CRADLHIWDTAGQERFHALGPIY   82 (218)
T ss_pred             CceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHh------hccccccc-ceeeeeeeeccchHhhhccCceE
Confidence            345789999999999999999999998777655443321110      11111222 11223455556699999999999


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      |++   ++++++|+|+++..+++.  +..|+.+      ..+-++||+||+|+...  +.+...+.+...+..+      
T Consensus        83 YRg---SnGalLVyDITDrdSFqK--VKnWV~Elr~mlGnei~l~IVGNKiDLEee--R~Vt~qeAe~YAesvG------  149 (218)
T KOG0088|consen   83 YRG---SNGALLVYDITDRDSFQK--VKNWVLELRTMLGNEIELLIVGNKIDLEEE--RQVTRQEAEAYAESVG------  149 (218)
T ss_pred             EeC---CCceEEEEeccchHHHHH--HHHHHHHHHHHhCCeeEEEEecCcccHHHh--hhhhHHHHHHHHHhhc------
Confidence            999   899999999999888754  4556553      56889999999999864  5566666677766666      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ..++++||+.+.|+.|+|+.|...+
T Consensus       150 A~y~eTSAk~N~Gi~elFe~Lt~~M  174 (218)
T KOG0088|consen  150 ALYMETSAKDNVGISELFESLTAKM  174 (218)
T ss_pred             hhheecccccccCHHHHHHHHHHHH
Confidence            4789999999999999999887643

>cd04166 CysN_ATPS CysN_ATPS subfamily

Probab=99.81  E-value=5e-19  Score=134.13  Aligned_cols=147  Identities=18%  Similarity=0.198  Sum_probs=90.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccc------------------------------cCCCCeeEEeeEE---EecCeE
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALT------------------------------SKKPGKTQLINHF---LVNKSW   87 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~------------------------------~~~~~~t~~~~~~---~~~~~~   87 (219)
                      +|+|+|.+|+|||||+++|+... ....                              ....++|.+....   +.+.++
T Consensus         1 ~i~iiG~~~~GKStL~~~Ll~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~   79 (208)
T cd04166           1 RFLTCGSVDDGKSTLIGRLLYDS-KSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKF   79 (208)
T ss_pred             CEEEEECCCCCHHHHHHHHHHHc-CCCCHHHHHHHHHHHHhcCCCCcceeeeccCChhhhcCCcCeecceeEEecCCceE
Confidence            68999999999999999998652 1111                              0113444443222   234479


Q ss_pred             EEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccccc
Q 027757           88 YIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMKVA  166 (219)
Q Consensus        88 ~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~  166 (219)
                      .++||||+.          .|.   .........+|++|+|+|++++..........++...+. ++++|+||+|+....
T Consensus        80 ~liDTpG~~----------~~~---~~~~~~~~~ad~~llVvD~~~~~~~~~~~~~~~~~~~~~~~iIvviNK~D~~~~~  146 (208)
T cd04166          80 IIADTPGHE----------QYT---RNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYS  146 (208)
T ss_pred             EEEECCcHH----------HHH---HHHHHhhhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCCcEEEEEEchhcccCC
Confidence            999999952          111   122223344899999999998766555554555555554 577899999986421


Q ss_pred             cCCCchHhHHHHH---HHHHhcCC-CCCCeEEeecCCCCChHHH
Q 027757          167 KGRRPDENIKSFQ---QLIRENYP-HHPPWIMTSSVTGLGRDEL  206 (219)
Q Consensus       167 ~~~~~~~~~~~~~---~~~~~~~~-~~~~~~~~Sa~~~~~v~el  206 (219)
                           ....+...   +.+...++ ...+++++||++|.|+.+.
T Consensus       147 -----~~~~~~i~~~~~~~~~~~~~~~~~ii~iSA~~g~ni~~~  185 (208)
T cd04166         147 -----EEVFEEIVADYLAFAAKLGIEDITFIPISALDGDNVVSR  185 (208)
T ss_pred             -----HHHHHHHHHHHHHHHHHcCCCCceEEEEeCCCCCCCccC
Confidence                 11122221   22222222 2357999999999998753

CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.

>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse

Probab=99.81  E-value=3.3e-19  Score=122.82  Aligned_cols=113  Identities=35%  Similarity=0.442  Sum_probs=80.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      +|+|+|.+|+|||||+|+|++. ........+++|.....  +..+ ..+.++||||+.........    ......+++
T Consensus         1 ~V~iiG~~~~GKSTlin~l~~~-~~~~~~~~~~~T~~~~~~~~~~~~~~~~~vDtpG~~~~~~~~~~----~~~~~~~~~   75 (116)
T PF01926_consen    1 RVAIIGRPNVGKSTLINALTGK-KLAKVSNIPGTTRDPVYGQFEYNNKKFILVDTPGINDGESQDND----GKEIRKFLE   75 (116)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS-TSSEESSSTTSSSSEEEEEEEETTEEEEEEESSSCSSSSHHHHH----HHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHhcc-ccccccccccceeeeeeeeeeeceeeEEEEeCCCCcccchhhHH----HHHHHHHHH
Confidence            6999999999999999999996 46667777777776533  2233 36799999998643221111    112333444


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK  159 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  159 (219)
                      ....+|++++|+|++++....+..+++++. .++|+++|+||
T Consensus        76 ~~~~~d~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK  116 (116)
T PF01926_consen   76 QISKSDLIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK  116 (116)
T ss_dssp             HHCTESEEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred             HHHHCCEEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence            445589999999988754545567777786 78999999998

These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....

>TIGR01393 lepA GTP-binding protein LepA

Probab=99.80  E-value=2.4e-18  Score=147.86  Aligned_cols=156  Identities=22%  Similarity=0.263  Sum_probs=104.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-------cccccc------CCCCeeEEeeEE---Ee--c---CeEEEEeCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK-------ELALTS------KKPGKTQLINHF---LV--N---KSWYIVDLPGYGF   97 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~-------~~~~~~------~~~~~t~~~~~~---~~--~---~~~~liDtpg~~~   97 (219)
                      ..+++|+|..++|||||+++|+...       +...+.      ...+.|......   +.  +   ..+.+|||||+. 
T Consensus         3 iRNi~IIGh~d~GKTTL~~rLl~~~g~i~~~~~~~~~~D~~~~ErerGiTi~~~~v~~~~~~~~g~~~~l~liDTPG~~-   81 (595)
T TIGR01393         3 IRNFSIIAHIDHGKSTLADRLLEYTGAISEREMREQVLDSMDLERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHV-   81 (595)
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHcCCCccccccccccCCChHHHhcCCCeeeeEEEEEEEcCCCCEEEEEEEECCCcH-
Confidence            4579999999999999999998742       111111      122444432211   11  2   368999999964 


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS  177 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  177 (219)
                               .|......+++.   +|++|+|+|++++.+.++...+..+...++|+++|+||+|+....    .....++
T Consensus        82 ---------dF~~~v~~~l~~---aD~aILVvDat~g~~~qt~~~~~~~~~~~ipiIiViNKiDl~~~~----~~~~~~e  145 (595)
T TIGR01393        82 ---------DFSYEVSRSLAA---CEGALLLVDAAQGIEAQTLANVYLALENDLEIIPVINKIDLPSAD----PERVKKE  145 (595)
T ss_pred             ---------HHHHHHHHHHHh---CCEEEEEecCCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCCccC----HHHHHHH
Confidence                     234455566666   899999999999877766655555555789999999999986421    1111223


Q ss_pred             HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          178 FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.+.++   .....++++||++|.|+++++++|.+.+
T Consensus       146 l~~~lg---~~~~~vi~vSAktG~GI~~Lle~I~~~l  179 (595)
T TIGR01393       146 IEEVIG---LDASEAILASAKTGIGIEEILEAIVKRV  179 (595)
T ss_pred             HHHHhC---CCcceEEEeeccCCCCHHHHHHHHHHhC
Confidence            322222   1113589999999999999999998754

LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.

>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional

Probab=99.80  E-value=4.1e-18  Score=146.82  Aligned_cols=159  Identities=22%  Similarity=0.253  Sum_probs=108.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           41 EFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      -|+++|..++|||||+++|++.. .........+.|.+..+...    +..+.+|||||+.             .+....
T Consensus         2 ii~~~GhvdhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~~g~~i~~IDtPGhe-------------~fi~~m   68 (614)
T PRK10512          2 IIATAGHVDHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQPDGRVLGFIDVPGHE-------------KFLSNM   68 (614)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecCCCcEEEEEECCCHH-------------HHHHHH
Confidence            58899999999999999999852 11122233466655443222    3367899999962             233444


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      ......+|++++|+|+.++...++.+.+.++...++| +++|+||+|+.+.+..   ....+++.+.+........++++
T Consensus        69 ~~g~~~~D~~lLVVda~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~~---~~v~~ei~~~l~~~~~~~~~ii~  145 (614)
T PRK10512         69 LAGVGGIDHALLVVACDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEARI---AEVRRQVKAVLREYGFAEAKLFV  145 (614)
T ss_pred             HHHhhcCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHHH---HHHHHHHHHHHHhcCCCCCcEEE
Confidence            4445558999999999998777777777777777777 5799999999753211   11122222223222223468999


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027757          195 TSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +||++|.|+++++++|.+...
T Consensus       146 VSA~tG~gI~~L~~~L~~~~~  166 (614)
T PRK10512        146 TAATEGRGIDALREHLLQLPE  166 (614)
T ss_pred             EeCCCCCCCHHHHHHHHHhhc
Confidence            999999999999999987654

>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1)

Probab=99.80  E-value=2.2e-18  Score=129.52  Aligned_cols=172  Identities=13%  Similarity=0.083  Sum_probs=107.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|.+|+|||||+|++++...........++|......   ..+..+.++||||+.......  ......+...+.
T Consensus         1 ~~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~--~~~~~~i~~~~~   78 (196)
T cd01852           1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSP--EQLSKEIVRCLS   78 (196)
T ss_pred             CEEEEECCCCCCHHHHHHHhhCCCccccccCCCCcccccceeeEEECCeEEEEEECcCCCCccCCh--HHHHHHHHHHHH
Confidence            479999999999999999999974332222233444443222   245589999999987543211  111234444555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .....+|++++|+++.+ .+..+...++++.+     .-.++++|+|++|.......+..........+.+-..++  -+
T Consensus        79 ~~~~g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~--~r  155 (196)
T cd01852          79 LSAPGPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCG--GR  155 (196)
T ss_pred             hcCCCCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhC--Ce
Confidence            55566899999999988 66667677777664     126899999999977543211111111112222222222  24


Q ss_pred             eEEee-----cCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTS-----SVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~S-----a~~~~~v~el~~~l~~~~~~  216 (219)
                      ++.++     +..+.++++|++.+.+.+..
T Consensus       156 ~~~f~~~~~~~~~~~q~~~Ll~~i~~~~~~  185 (196)
T cd01852         156 YVAFNNKAKGEEQEQQVKELLAKVESMVKE  185 (196)
T ss_pred             EEEEeCCCCcchhHHHHHHHHHHHHHHHHh
Confidence            54554     45578899999999888764

This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).

>COG0536 Obg Predicted GTPase [General function prediction only]

Probab=99.80  E-value=4.4e-18  Score=132.69  Aligned_cols=191  Identities=22%  Similarity=0.246  Sum_probs=137.6

Q ss_pred             cccccccccceeeeeccCCCCCCCCCCC--------------CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE
Q 027757           12 PYAGHSQIKEVEFVKSSGRAKDCPKDDR--------------PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL   77 (219)
Q Consensus        12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~   77 (219)
                      .+.+...+.|..|..+..+.++....+.              -.|.++|-|+||||||++.+...  .+++..++.||..
T Consensus       118 akGG~GG~GN~~Fks~~nrAP~~a~~G~~Ge~r~v~LELKllADVGLVG~PNaGKSTlls~vS~A--kPKIadYpFTTL~  195 (369)
T COG0536         118 AKGGRGGLGNAHFKSSVNRAPRFATPGEPGEERDLRLELKLLADVGLVGLPNAGKSTLLSAVSAA--KPKIADYPFTTLV  195 (369)
T ss_pred             EcCCCCCccchhhcCcccCCcccCCCCCCCceEEEEEEEeeecccccccCCCCcHHHHHHHHhhc--CCcccCCcccccc
Confidence            3567778889999998888877665443              25788999999999999999996  4888889988887


Q ss_pred             eeEE--E--ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc---cc-HHHHHHhcc-
Q 027757           78 INHF--L--VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK---ID-LDCANWLGR-  148 (219)
Q Consensus        78 ~~~~--~--~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~-~~~~~~~~~-  148 (219)
                      +...  .  ....|++-|.||+......-.|      +-..|++-.+.+.+++.|+|++.....   .+ ..+...+.. 
T Consensus       196 PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~G------LG~~FLrHIERt~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y  269 (369)
T COG0536         196 PNLGVVRVDGGESFVVADIPGLIEGASEGVG------LGLRFLRHIERTRVLLHVIDLSPIDGRDPIEDYQTIRNELEKY  269 (369)
T ss_pred             CcccEEEecCCCcEEEecCcccccccccCCC------ccHHHHHHHHhhheeEEEEecCcccCCCHHHHHHHHHHHHHHh
Confidence            5332  2  2346999999997654333332      334555556667899999999964431   11 111222222 


Q ss_pred             ----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          149 ----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       149 ----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                          .++|.++|+||+|+...      .++.+.+.+.+.........++ +|+.++.|++++...+.+++...
T Consensus       270 ~~~L~~K~~ivv~NKiD~~~~------~e~~~~~~~~l~~~~~~~~~~~-ISa~t~~g~~~L~~~~~~~l~~~  335 (369)
T COG0536         270 SPKLAEKPRIVVLNKIDLPLD------EEELEELKKALAEALGWEVFYL-ISALTREGLDELLRALAELLEET  335 (369)
T ss_pred             hHHhccCceEEEEeccCCCcC------HHHHHHHHHHHHHhcCCCccee-eehhcccCHHHHHHHHHHHHHHh
Confidence                67899999999996543      3667777777776666544444 99999999999999998877654

>KOG0097 consensus GTPase Rab14, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=3.2e-18  Score=116.94  Aligned_cols=158  Identities=19%  Similarity=0.221  Sum_probs=115.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ....+|-+|+|..|+|||+|+..|+.+++.+.-.-+.++........+.++       .+....|++.|+++|+.....|
T Consensus         8 ysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgq-------kiklqiwdtagqerfravtrsy   80 (215)
T KOG0097|consen    8 YSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQ-------KIKLQIWDTAGQERFRAVTRSY   80 (215)
T ss_pred             hhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCc-------EEEEEEeecccHHHHHHHHHHH
Confidence            355789999999999999999999998777655555554433222222220       0222445555689999999999


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++   +.+.++|+|+++..+..++  -.|+..      .+..+++++||.|+...  +.+.-++.+++.+..+      
T Consensus        81 yrg---aagalmvyditrrstynhl--sswl~dar~ltnpnt~i~lignkadle~q--rdv~yeeak~faeeng------  147 (215)
T KOG0097|consen   81 YRG---AAGALMVYDITRRSTYNHL--SSWLTDARNLTNPNTVIFLIGNKADLESQ--RDVTYEEAKEFAEENG------  147 (215)
T ss_pred             hcc---ccceeEEEEehhhhhhhhH--HHHHhhhhccCCCceEEEEecchhhhhhc--ccCcHHHHHHHHhhcC------
Confidence            999   7888999999998776554  456553      56678999999999875  5555566666666544      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ..++++||++|.|+++.|-.-.+.
T Consensus       148 l~fle~saktg~nvedafle~akk  171 (215)
T KOG0097|consen  148 LMFLEASAKTGQNVEDAFLETAKK  171 (215)
T ss_pred             eEEEEecccccCcHHHHHHHHHHH
Confidence            578999999999999988655443

>KOG0073 consensus GTP-binding ADP-ribosylation factor-like protein ARL2 [Intracellular trafficking, secretion, and vesicular transport; Cytoskeleton]

Probab=99.79  E-value=2.1e-18  Score=120.53  Aligned_cols=159  Identities=21%  Similarity=0.194  Sum_probs=109.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +..++|+++|..||||||++++|.+. ....+.|+.+-... ........+.++|..|          |..++++++.||
T Consensus        14 erE~riLiLGLdNsGKTti~~kl~~~-~~~~i~pt~gf~Ik-tl~~~~~~L~iwDvGG----------q~~lr~~W~nYf   81 (185)
T KOG0073|consen   14 EREVRILILGLDNSGKTTIVKKLLGE-DTDTISPTLGFQIK-TLEYKGYTLNIWDVGG----------QKTLRSYWKNYF   81 (185)
T ss_pred             hheeEEEEEecCCCCchhHHHHhcCC-CccccCCccceeeE-EEEecceEEEEEEcCC----------cchhHHHHHHhh
Confidence            44789999999999999999999997 34455555542221 1111233555666654          667789999999


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH--HHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc-CCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL--DCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  190 (219)
                      ..   +|++|||+|.+++...++-  ++...+.+   ...|++++.||.|+...    ...+++.... .+... -...+
T Consensus        82 es---tdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~----l~~~~i~~~~-~L~~l~ks~~~  153 (185)
T KOG0073|consen   82 ES---TDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGA----LSLEEISKAL-DLEELAKSHHW  153 (185)
T ss_pred             hc---cCeEEEEEECchHHHHHHHHHHHHHHHhhhhhcCCceEEEEecCcCccc----cCHHHHHHhh-CHHHhccccCc
Confidence            99   9999999999987665442  12222222   56899999999998743    1122333221 12222 12457


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++-||+.+|+++.+-++|++....
T Consensus       154 ~l~~cs~~tge~l~~gidWL~~~l~  178 (185)
T KOG0073|consen  154 RLVKCSAVTGEDLLEGIDWLCDDLM  178 (185)
T ss_pred             eEEEEeccccccHHHHHHHHHHHHH
Confidence            8999999999999999999987554

>KOG0081 consensus GTPase Rab27, small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=9.6e-20  Score=126.65  Aligned_cols=159  Identities=20%  Similarity=0.260  Sum_probs=114.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC-------CCCCCCCcchhhhHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG-------YGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg-------~~~~~~~~~~~~~~~~~  111 (219)
                      .+|.+.+|.+|+|||||+-+.+...+..+.-.+.+.......+..+     -.-||       +..+.|++.||++|+++
T Consensus         9 likfLaLGDSGVGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~-----s~gp~g~gr~~rihLQlWDTAGQERFRSL   83 (219)
T KOG0081|consen    9 LIKFLALGDSGVGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYN-----SSGPGGGGRGQRIHLQLWDTAGQERFRSL   83 (219)
T ss_pred             HHHHHhhccCCCCceEEEEEecCCcccceeEEEeecccccceEEEe-----ccCCCCCCcceEEEEeeeccccHHHHHHH
Confidence            3577889999999999988888776665544444433221111110     01111       12356677779999999


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE  184 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  184 (219)
                      .-.|++.   |=++++++|.++..++.  ....|+.+       .+.-+++++||+|+.+.  +.+.+.+..++.+.++ 
T Consensus        84 TTAFfRD---AMGFlLiFDlT~eqSFL--nvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~--R~Vs~~qa~~La~kyg-  155 (219)
T KOG0081|consen   84 TTAFFRD---AMGFLLIFDLTSEQSFL--NVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ--RVVSEDQAAALADKYG-  155 (219)
T ss_pred             HHHHHHh---hccceEEEeccchHHHH--HHHHHHHHHHHhhccCCCCEEEEcCccchhhh--hhhhHHHHHHHHHHhC-
Confidence            9999999   88999999999877774  44567664       56779999999999875  4555566666666665 


Q ss_pred             cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                           +|||++||-+|.|+++..+.+...+-
T Consensus       156 -----lPYfETSA~tg~Nv~kave~LldlvM  181 (219)
T KOG0081|consen  156 -----LPYFETSACTGTNVEKAVELLLDLVM  181 (219)
T ss_pred             -----CCeeeeccccCcCHHHHHHHHHHHHH
Confidence                 69999999999999998888876543

>cd04104 p47_IIGP_like p47 (47-kDa) family

Probab=99.79  E-value=4.8e-18  Score=127.67  Aligned_cols=168  Identities=21%  Similarity=0.199  Sum_probs=103.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC---eeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPG---KTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~---~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      +++|+++|.+|+|||||+|+|++...........+   ++.....+..  ...+.++||||+......   ...|  +..
T Consensus         1 ~~kI~i~G~~g~GKSSLin~L~g~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~l~DtpG~~~~~~~---~~~~--l~~   75 (197)
T cd04104           1 PLNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVVETTMKRTPYPHPKFPNVTLWDLPGIGSTAFP---PDDY--LEE   75 (197)
T ss_pred             CeEEEEECCCCCCHHHHHHHHhccCCCCCCccccCccccccCceeeecCCCCCceEEeCCCCCcccCC---HHHH--HHH
Confidence            46899999999999999999999643222211111   2222222221  236899999998643221   1111  111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC------CchHhHHHHHHHHHhcC-
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR------RPDENIKSFQQLIRENY-  186 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~------~~~~~~~~~~~~~~~~~-  186 (219)
                      ..+   ..+|++++|.+  +..+..+...++++...+.|+++|+||+|+.......      ...+.++++.+.+...+ 
T Consensus        76 ~~~---~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~  150 (197)
T cd04104          76 MKF---SEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQ  150 (197)
T ss_pred             hCc---cCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHH
Confidence            112   23788888753  3456666677777777889999999999986432211      01223334444443322 


Q ss_pred             ---CCCCCeEEeecC--CCCChHHHHHHHHHHHhh
Q 027757          187 ---PHHPPWIMTSSV--TGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       187 ---~~~~~~~~~Sa~--~~~~v~el~~~l~~~~~~  216 (219)
                         ...+++|.+|+.  .+.|+..|.+.+...+-+
T Consensus       151 ~~~~~~p~v~~vS~~~~~~~~~~~l~~~~~~~l~~  185 (197)
T cd04104         151 EAGVSEPPVFLVSNFDPSDYDFPKLRETLLKDLPA  185 (197)
T ss_pred             HcCCCCCCEEEEeCCChhhcChHHHHHHHHHHhhH
Confidence               345689999998  578999999999876543

The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei

>PRK04004 translation initiation factor IF-2; Validated

Probab=99.79  E-value=8.4e-18  Score=144.21  Aligned_cols=162  Identities=22%  Similarity=0.298  Sum_probs=103.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------c--------CeEEEEeCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------N--------KSWYIVDLPGYG   96 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~--------~~~~liDtpg~~   96 (219)
                      ..|.|+++|.+++|||||+++|.+.. .....+ .+.|.++.....             .        ..+.+|||||+.
T Consensus         5 R~p~V~i~Gh~~~GKTSLl~~l~~~~-v~~~~~-g~itq~ig~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDTPG~e   82 (586)
T PRK04004          5 RQPIVVVLGHVDHGKTTLLDKIRGTA-VAAKEA-GGITQHIGATEVPIDVIEKIAGPLKKPLPIKLKIPGLLFIDTPGHE   82 (586)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCcc-cccCCC-CceEEeeceeeccccccccccceeccccccccccCCEEEEECCChH
Confidence            46789999999999999999998863 221111 122222211110             0        126899999953


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC-------
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR-------  169 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-------  169 (219)
                                .|..++...+..   +|++++|+|++++...+..+.+..+...++|+++++||+|+...-...       
T Consensus        83 ----------~f~~~~~~~~~~---aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~~~~~~~~~~~~~e  149 (586)
T PRK04004         83 ----------AFTNLRKRGGAL---ADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRIPGWKSTEDAPFLE  149 (586)
T ss_pred             ----------HHHHHHHHhHhh---CCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCchhhhhhcCchHHH
Confidence                      233344444444   899999999998766666666777777899999999999985311000       


Q ss_pred             -------CchHh----HHHHHHHHHh------------cCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          170 -------RPDEN----IKSFQQLIRE------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       170 -------~~~~~----~~~~~~~~~~------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                             ...+.    +.+....+..            .+....+++++||++|.|++++++.+....
T Consensus       150 ~~~~~~~~v~~~f~~~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~  217 (586)
T PRK04004        150 SIEKQSQRVQQELEEKLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA  217 (586)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence                   00111    1111122221            123457899999999999999999886543

>cd00882 Ras_like_GTPase Ras-like GTPase superfamily

Probab=99.79  E-value=4e-18  Score=121.61  Aligned_cols=147  Identities=20%  Similarity=0.191  Sum_probs=94.9

Q ss_pred             EEcCCCCCHHHHHHHHhcCcc-cccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           44 ILGRSNVGKSSLINALVRKKE-LALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        44 i~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      ++|++|+|||||++++++... .....++. .........   .+..+.++|+||....          ......++.. 
T Consensus         1 iiG~~~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~~~~~~~~l~D~~g~~~~----------~~~~~~~~~~-   68 (157)
T cd00882           1 VVGDSGVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVDGKKVKLQIWDTAGQERF----------RSLRRLYYRG-   68 (157)
T ss_pred             CCCcCCCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEECCEEEEEEEEecCChHHH----------HhHHHHHhcC-
Confidence            589999999999999999743 12222222 222222222   2447899999995321          2222444444 


Q ss_pred             CCccEEEEEEeCCCCCCcccHHH-----HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          120 ESLVGVLLLIDASVPPQKIDLDC-----ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~~-----~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                        +|++++|+|++++.+......     .......+.|+++++||+|+.......    . ........  .....++++
T Consensus        69 --~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~~~~----~-~~~~~~~~--~~~~~~~~~  139 (157)
T cd00882          69 --ADGIILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVS----E-EELAEQLA--KELGVPYFE  139 (157)
T ss_pred             --CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCCCcEEEEEeccccccccchH----H-HHHHHHHH--hhcCCcEEE
Confidence              899999999998766554432     233445789999999999987643211    1 10011111  122378999


Q ss_pred             eecCCCCChHHHHHHHH
Q 027757          195 TSSVTGLGRDELLLHMS  211 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~  211 (219)
                      +|+..+.|+++++++|.
T Consensus       140 ~s~~~~~~i~~~~~~l~  156 (157)
T cd00882         140 TSAKTGENVEELFEELA  156 (157)
T ss_pred             EecCCCCChHHHHHHHh
Confidence            99999999999999875

The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb

>COG2262 HflX GTPases [General function prediction only]

Probab=99.79  E-value=6.2e-18  Score=135.00  Aligned_cols=162  Identities=23%  Similarity=0.244  Sum_probs=112.1

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE----eeEEEecCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL----INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWS  109 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~----~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~  109 (219)
                      ......+.|.++|.+|||||||+|+|++.....  .+....|.+    ......+..+.+-||.|+. .+.+......|.
T Consensus       187 R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~~--~d~LFATLdpttR~~~l~~g~~vlLtDTVGFI-~~LP~~LV~AFk  263 (411)
T COG2262         187 RSRSGIPLVALVGYTNAGKSTLFNALTGADVYV--ADQLFATLDPTTRRIELGDGRKVLLTDTVGFI-RDLPHPLVEAFK  263 (411)
T ss_pred             hcccCCCeEEEEeeccccHHHHHHHHhccCeec--cccccccccCceeEEEeCCCceEEEecCccCc-ccCChHHHHHHH
Confidence            345678999999999999999999999874222  222222222    1222235689999999976 344555566666


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      +..+..    ..+|+++.|+|++++......    +++..+...++|+++|+||+|+....       .   ....+...
T Consensus       264 sTLEE~----~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~-------~---~~~~~~~~  329 (411)
T COG2262         264 STLEEV----KEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDE-------E---ILAELERG  329 (411)
T ss_pred             HHHHHh----hcCCEEEEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCch-------h---hhhhhhhc
Confidence            666653    346999999999998554442    34444445779999999999988652       1   11111111


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .   ...+++||++|.|+++|++.|.+.+.
T Consensus       330 ~---~~~v~iSA~~~~gl~~L~~~i~~~l~  356 (411)
T COG2262         330 S---PNPVFISAKTGEGLDLLRERIIELLS  356 (411)
T ss_pred             C---CCeEEEEeccCcCHHHHHHHHHHHhh
Confidence            1   25899999999999999999988765

>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.79  E-value=1.1e-17  Score=137.65  Aligned_cols=157  Identities=22%  Similarity=0.291  Sum_probs=125.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec------CeEEEEeCCCCCCCCCCcchhhhHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN------KSWYIVDLPGYGFAKAPDVTRMDWSS  110 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~------~~~~liDtpg~~~~~~~~~~~~~~~~  110 (219)
                      ...|-|++||....|||||+..+-+.+  -...-.-+.|.++..+...      ..++|+||||+             +.
T Consensus         3 ~R~PvVtimGHVDHGKTtLLD~IR~t~--Va~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-------------eA   67 (509)
T COG0532           3 LRPPVVTIMGHVDHGKTTLLDKIRKTN--VAAGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-------------EA   67 (509)
T ss_pred             CCCCEEEEeCcccCCccchhhhHhcCc--cccccCCceeeEeeeEEEEeccCCCceEEEEcCCcH-------------HH
Confidence            346889999999999999999999874  3334455678887665543      37999999997             56


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH------h
Q 027757          111 FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR------E  184 (219)
Q Consensus       111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~------~  184 (219)
                      |..+.-|+.+.+|.+|+|+|+.++...+..+.+..++..+.|+++++||+|+.+.        +......++.      .
T Consensus        68 Ft~mRaRGa~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~--------np~~v~~el~~~gl~~E  139 (509)
T COG0532          68 FTAMRARGASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEA--------NPDKVKQELQEYGLVPE  139 (509)
T ss_pred             HHHHHhcCCccccEEEEEEEccCCcchhHHHHHHHHHHCCCCEEEEEecccCCCC--------CHHHHHHHHHHcCCCHh
Confidence            7777788888899999999999999999999999999999999999999999854        2222233322      2


Q ss_pred             cCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .|+....++++||++|.|+++|++.+.-.++.
T Consensus       140 ~~gg~v~~VpvSA~tg~Gi~eLL~~ill~aev  171 (509)
T COG0532         140 EWGGDVIFVPVSAKTGEGIDELLELILLLAEV  171 (509)
T ss_pred             hcCCceEEEEeeccCCCCHHHHHHHHHHHHHH
Confidence            44556789999999999999999998765543

>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma

Probab=99.78  E-value=5.2e-18  Score=140.47  Aligned_cols=160  Identities=20%  Similarity=0.237  Sum_probs=101.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccccc--ccCCCCeeEEeeE----------------E-E------------ecCe
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELAL--TSKKPGKTQLINH----------------F-L------------VNKS   86 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~--~~~~~~~t~~~~~----------------~-~------------~~~~   86 (219)
                      ..++|+++|..++|||||+++|.+. +...  .....+.|.....                + .            ....
T Consensus         3 ~~~~i~iiG~~~~GKSTL~~~Lt~~-~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (406)
T TIGR03680         3 PEVNIGMVGHVDHGKTTLTKALTGV-WTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRR   81 (406)
T ss_pred             ceEEEEEEccCCCCHHHHHHHHhCe-ecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccE
Confidence            4678999999999999999999875 2111  0111111111110                0 0            1246


Q ss_pred             EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEcccccc
Q 027757           87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMK  164 (219)
Q Consensus        87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~  164 (219)
                      +.++||||+.             .+...++.....+|++|+|+|++++. ..+..+.+..+...+ .|+++++||+|+.+
T Consensus        82 i~liDtPGh~-------------~f~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~  148 (406)
T TIGR03680        82 VSFVDAPGHE-------------TLMATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVS  148 (406)
T ss_pred             EEEEECCCHH-------------HHHHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCC
Confidence            8999999952             23344444444589999999999865 444455555555544 46899999999975


Q ss_pred             cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .+..   .+..+++.+.+...+...++++++||++|.|+++++++|...+
T Consensus       149 ~~~~---~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~e~L~~~l  195 (406)
T TIGR03680       149 KEKA---LENYEEIKEFVKGTVAENAPIIPVSALHNANIDALLEAIEKFI  195 (406)
T ss_pred             HHHH---HHHHHHHHhhhhhcccCCCeEEEEECCCCCChHHHHHHHHHhC
Confidence            4211   1112222222222223357899999999999999999998753

eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.

>PRK04000 translation initiation factor IF-2 subunit gamma; Validated

Probab=99.78  E-value=7.5e-18  Score=139.50  Aligned_cols=161  Identities=19%  Similarity=0.249  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccc--cccCCCCeeEEeeE----------------EE-------------ecC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELA--LTSKKPGKTQLINH----------------FL-------------VNK   85 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~--~~~~~~~~t~~~~~----------------~~-------------~~~   85 (219)
                      ...++|+++|..++|||||+.+|.+. +..  ......+.|.....                +.             ...
T Consensus         7 ~~~~ni~v~Gh~d~GKSTL~~~L~~~-~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   85 (411)
T PRK04000          7 QPEVNIGMVGHVDHGKTTLVQALTGV-WTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLR   85 (411)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHhhCe-ecccCHhHHhcCcEEEecccccccccccccCcccccccccccccccccccccc
Confidence            34688999999999999999999774 111  11112233332211                00             024


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCCC-cEEEEEEccccc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNNI-PLTFVFTKCDKM  163 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~-p~iiv~nK~D~~  163 (219)
                      .+.++||||.             ..+...++.....+|++++|+|++++. .....+.+.++...+. |+++|+||+|+.
T Consensus        86 ~i~liDtPG~-------------~~f~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~  152 (411)
T PRK04000         86 RVSFVDAPGH-------------ETLMATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLV  152 (411)
T ss_pred             EEEEEECCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccc
Confidence            6899999994             245566777766789999999999865 4444555555555554 689999999997


Q ss_pred             ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.+..   ....+++...+........+++++||+++.|+++++++|.+.+
T Consensus       153 ~~~~~---~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gI~~L~~~L~~~l  200 (411)
T PRK04000        153 SKERA---LENYEQIKEFVKGTVAENAPIIPVSALHKVNIDALIEAIEEEI  200 (411)
T ss_pred             cchhH---HHHHHHHHHHhccccCCCCeEEEEECCCCcCHHHHHHHHHHhC
Confidence            64211   1112222222222222347899999999999999999998754

>TIGR00437 feoB ferrous iron transporter FeoB

Probab=99.78  E-value=9.6e-18  Score=144.22  Aligned_cols=151  Identities=25%  Similarity=0.255  Sum_probs=103.8

Q ss_pred             cCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--E-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCc
Q 027757           46 GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--L-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESL  122 (219)
Q Consensus        46 G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (219)
                      |++|+|||||+|++++..  ..+.+.+++|.+....  . .+..+.++||||......... +   +.+...++.. ..+
T Consensus         1 G~pNvGKSSL~N~Ltg~~--~~v~n~pG~Tv~~~~~~i~~~~~~i~lvDtPG~~~~~~~s~-~---e~v~~~~l~~-~~a   73 (591)
T TIGR00437         1 GNPNVGKSTLFNALTGAN--QTVGNWPGVTVEKKEGKLGFQGEDIEIVDLPGIYSLTTFSL-E---EEVARDYLLN-EKP   73 (591)
T ss_pred             CCCCCCHHHHHHHHhCCC--CeecCCCCeEEEEEEEEEEECCeEEEEEECCCccccCccch-H---HHHHHHHHhh-cCC
Confidence            899999999999999974  4567788888765432  2 234789999999643221111 1   2334444432 347


Q ss_pred             cEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 027757          123 VGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLG  202 (219)
Q Consensus       123 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  202 (219)
                      |++++|+|+++...  .......+.+.++|+++|+||+|+.+....   ..+.+++.+.+    +  .+++++||++|.|
T Consensus        74 DvvI~VvDat~ler--~l~l~~ql~~~~~PiIIVlNK~Dl~~~~~i---~~d~~~L~~~l----g--~pvv~tSA~tg~G  142 (591)
T TIGR00437        74 DLVVNVVDASNLER--NLYLTLQLLELGIPMILALNLVDEAEKKGI---RIDEEKLEERL----G--VPVVPTSATEGRG  142 (591)
T ss_pred             CEEEEEecCCcchh--hHHHHHHHHhcCCCEEEEEehhHHHHhCCC---hhhHHHHHHHc----C--CCEEEEECCCCCC
Confidence            99999999997543  234444555678999999999998654321   12233333333    2  6899999999999


Q ss_pred             hHHHHHHHHHHH
Q 027757          203 RDELLLHMSQLR  214 (219)
Q Consensus       203 v~el~~~l~~~~  214 (219)
                      ++++++++.+..
T Consensus       143 i~eL~~~i~~~~  154 (591)
T TIGR00437       143 IERLKDAIRKAI  154 (591)
T ss_pred             HHHHHHHHHHHh
Confidence            999999998754

FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.

>PRK05433 GTP-binding protein LepA; Provisional

Probab=99.78  E-value=1.2e-17  Score=143.70  Aligned_cols=157  Identities=22%  Similarity=0.220  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-c------ccc------cCCCCeeEEee---EEEe-----cCeEEEEeCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE-L------ALT------SKKPGKTQLIN---HFLV-----NKSWYIVDLPGY   95 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~------~~~------~~~~~~t~~~~---~~~~-----~~~~~liDtpg~   95 (219)
                      ....+++|+|..++|||||+++|+...- .      ..+      ....+.|....   ..+.     +..+.+|||||+
T Consensus         5 ~~iRNi~IiGhvd~GKTTL~~rLl~~tg~i~~~~~~~~~lD~~~~ErerGiTi~~~~v~~~~~~~dg~~~~lnLiDTPGh   84 (600)
T PRK05433          5 KNIRNFSIIAHIDHGKSTLADRLIELTGTLSEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYILNLIDTPGH   84 (600)
T ss_pred             ccCCEEEEECCCCCCHHHHHHHHHHhcCCCcccccccccccCchHHhhcCCcccccEEEEEEEccCCCcEEEEEEECCCc
Confidence            3466899999999999999999986310 0      001      11223333221   1111     236899999996


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhH
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI  175 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  175 (219)
                      ..          |...+..+++.   +|++|+|+|++++...++...+.++...++|+++|+||+|+....        .
T Consensus        85 ~d----------F~~~v~~sl~~---aD~aILVVDas~gv~~qt~~~~~~~~~~~lpiIvViNKiDl~~a~--------~  143 (600)
T PRK05433         85 VD----------FSYEVSRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAAD--------P  143 (600)
T ss_pred             HH----------HHHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCccc--------H
Confidence            42          23344555666   899999999999877766666666666789999999999986431        1


Q ss_pred             HHHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          176 KSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       176 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++..+.+...++. ...++++||++|.|+++++++|.+.+
T Consensus       144 ~~v~~ei~~~lg~~~~~vi~iSAktG~GI~~Ll~~I~~~l  183 (600)
T PRK05433        144 ERVKQEIEDVIGIDASDAVLVSAKTGIGIEEVLEAIVERI  183 (600)
T ss_pred             HHHHHHHHHHhCCCcceEEEEecCCCCCHHHHHHHHHHhC
Confidence            1122222222221 13589999999999999999998754

>PRK12736 elongation factor Tu; Reviewed

Probab=99.78  E-value=6.9e-18  Score=139.23  Aligned_cols=162  Identities=20%  Similarity=0.254  Sum_probs=107.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc--------------ccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKEL--------------ALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~   99 (219)
                      ....+|+++|..++|||||+++|++....              .......+.|.+......   +..+.++||||+.   
T Consensus        10 k~~~ni~i~Ghvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~~~~~~~~~~~~~~i~~iDtPGh~---   86 (394)
T PRK12736         10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLNQAKDYDSIDAAPEEKERGITINTAHVEYETEKRHYAHVDCPGHA---   86 (394)
T ss_pred             CCeeEEEEEccCCCcHHHHHHHHHhhhhhhccccccchhhhcCCHHHHhcCccEEEEeeEecCCCcEEEEEECCCHH---
Confidence            34688999999999999999999873100              011123455554433332   3478999999952   


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHH-H
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIK-S  177 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~-~  177 (219)
                                .+....+.+...+|++++|+|+.++...++.+.+.++...++| +++++||+|+.+.++.   .+.+. +
T Consensus        87 ----------~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~~~~~~g~~~~IvviNK~D~~~~~~~---~~~i~~~  153 (394)
T PRK12736         87 ----------DYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYLVVFLNKVDLVDDEEL---LELVEME  153 (394)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCEEEEEEEecCCcchHHH---HHHHHHH
Confidence                      3344555666668999999999988777777888888888888 6788999998743211   11111 2


Q ss_pred             HHHHHHhcC--CCCCCeEEeecCCCC--------ChHHHHHHHHHHH
Q 027757          178 FQQLIRENY--PHHPPWIMTSSVTGL--------GRDELLLHMSQLR  214 (219)
Q Consensus       178 ~~~~~~~~~--~~~~~~~~~Sa~~~~--------~v~el~~~l~~~~  214 (219)
                      +.+.+....  ....+++++||++|.        +++++++.+.+.+
T Consensus       154 i~~~l~~~~~~~~~~~ii~vSa~~g~~~~~~~~~~i~~Ll~~l~~~l  200 (394)
T PRK12736        154 VRELLSEYDFPGDDIPVIRGSALKALEGDPKWEDAIMELMDAVDEYI  200 (394)
T ss_pred             HHHHHHHhCCCcCCccEEEeeccccccCCCcchhhHHHHHHHHHHhC
Confidence            222222211  124689999999983        5778888776643

>PRK12317 elongation factor 1-alpha; Reviewed

Probab=99.78  E-value=4.6e-18  Score=141.85  Aligned_cols=155  Identities=20%  Similarity=0.229  Sum_probs=96.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccc------------------------------ccCCCCeeEEeeEEEe---
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELAL------------------------------TSKKPGKTQLINHFLV---   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~------------------------------~~~~~~~t~~~~~~~~---   83 (219)
                      ...++|+++|.+++|||||+++|+... -..                              .....++|.+......   
T Consensus         4 k~~~~v~iiGh~d~GKSTL~~~Ll~~~-g~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~Er~rG~T~d~~~~~~~~~   82 (425)
T PRK12317          4 KPHLNLAVIGHVDHGKSTLVGRLLYET-GAIDEHIIEELREEAKEKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETD   82 (425)
T ss_pred             CCEEEEEEECCCCCChHHHHHHHHHHc-CCcCHHHHHHHHHHHHhcCCcccchhhhhccCHhHhhcCccceeeeEEEecC
Confidence            346789999999999999999999542 110                              1124566666544333   


Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC--CCCcccHHHHHHhccCCC-cEEEEEEcc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV--PPQKIDLDCANWLGRNNI-PLTFVFTKC  160 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~--~~~~~~~~~~~~~~~~~~-p~iiv~nK~  160 (219)
                      +..+.++||||+..             +..........+|++|+|+|+++  .........+.++...+. |+++++||+
T Consensus        83 ~~~i~liDtpG~~~-------------~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~~~iivviNK~  149 (425)
T PRK12317         83 KYYFTIVDCPGHRD-------------FVKNMITGASQADAAVLVVAADDAGGVMPQTREHVFLARTLGINQLIVAINKM  149 (425)
T ss_pred             CeEEEEEECCCccc-------------chhhHhhchhcCCEEEEEEEcccCCCCCcchHHHHHHHHHcCCCeEEEEEEcc
Confidence            44799999999631             11222233445899999999998  555555555555555554 699999999


Q ss_pred             cccccccCCCchHhHHHHHHHHHhcC-C-CCCCeEEeecCCCCChHHH
Q 027757          161 DKMKVAKGRRPDENIKSFQQLIRENY-P-HHPPWIMTSSVTGLGRDEL  206 (219)
Q Consensus       161 D~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~v~el  206 (219)
                      |+..... .......+++.+.+.... . ...+++++||++|.|++++
T Consensus       150 Dl~~~~~-~~~~~~~~~i~~~l~~~g~~~~~~~ii~iSA~~g~gi~~~  196 (425)
T PRK12317        150 DAVNYDE-KRYEEVKEEVSKLLKMVGYKPDDIPFIPVSAFEGDNVVKK  196 (425)
T ss_pred             ccccccH-HHHHHHHHHHHHHHHhhCCCcCcceEEEeecccCCCcccc
Confidence            9875210 000111122222222111 1 1367999999999999873

>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta)

Probab=99.77  E-value=1.2e-17  Score=126.04  Aligned_cols=155  Identities=21%  Similarity=0.308  Sum_probs=96.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ++|+++|++|+|||||+++|....+....++.   ......+..     +..+.+||+||..          .+......
T Consensus         1 ~~vll~G~~~sGKTsL~~~l~~~~~~~t~~s~---~~~~~~~~~~~~~~~~~~~l~D~pG~~----------~~~~~~~~   67 (203)
T cd04105           1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSI---EPNVATFILNSEGKGKKFRLVDVPGHP----------KLRDKLLE   67 (203)
T ss_pred             CeEEEEcCCCCCHHHHHHHHhcCCCCCccCcE---eecceEEEeecCCCCceEEEEECCCCH----------HHHHHHHH
Confidence            47999999999999999999987443332222   112222222     3468999999953          23445556


Q ss_pred             HhhccCCc-cEEEEEEeCCCCC-CcccHHHHHHhc---------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          115 YFLNRESL-VGVLLLIDASVPP-QKIDLDCANWLG---------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       115 ~~~~~~~~-d~vi~v~d~~~~~-~~~~~~~~~~~~---------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      +++.   + +++|||+|+.+.. +..+  ...++.         ..++|+++++||+|+..........+.++..+..+.
T Consensus        68 ~~~~---~~~~vV~VvD~~~~~~~~~~--~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~~~~~i~~~le~ei~~~~  142 (203)
T cd04105          68 TLKN---SAKGIVFVVDSATFQKNLKD--VAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAKKIKEQLEKELNTLR  142 (203)
T ss_pred             HHhc---cCCEEEEEEECccchhHHHH--HHHHHHHHHHHHhhccCCCCEEEEecchhhcccCCHHHHHHHHHHHHHHHH
Confidence            6666   5 9999999999863 2221  122211         258999999999998765433323333333222211


Q ss_pred             h------------------------------cCCCCCCeEEeecCCCC-ChHHHHHHHHH
Q 027757          184 E------------------------------NYPHHPPWIMTSSVTGL-GRDELLLHMSQ  212 (219)
Q Consensus       184 ~------------------------------~~~~~~~~~~~Sa~~~~-~v~el~~~l~~  212 (219)
                      .                              +....+.++++|++.+. |++++.+||.+
T Consensus       143 ~~r~~~l~~~~~~~~~~~~~~~~~~~~f~f~~~~~~v~~~~~s~~~~~~~~~~~~~w~~~  202 (203)
T cd04105         143 ESRSKSLSSLDGDEGSKESLGDKGGKSFEFDQLEGKVEFLEGSVKVDGGGIDGWEEWIDE  202 (203)
T ss_pred             HHHhccccccccccccccccccccCcceeeccCceeEEEEEeEEecCCCChHhHHHHHhh
Confidence            1                              00113457788888766 69999999865

SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ

>KOG1489 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=99.77  E-value=7.3e-18  Score=130.06  Aligned_cols=157  Identities=24%  Similarity=0.251  Sum_probs=108.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC----eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK----SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ...|.++|.||||||||+|++...+  +.+..+..||..+....+.+    ++.+-|.||+........|      +.-.
T Consensus       196 iadvGLVG~PNAGKSTLL~als~AK--pkVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkG------lG~~  267 (366)
T KOG1489|consen  196 IADVGLVGFPNAGKSTLLNALSRAK--PKVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKG------LGYK  267 (366)
T ss_pred             ecccceecCCCCcHHHHHHHhhccC--CcccccceeeeccccceeeccccceeEeccCccccccccccCc------ccHH
Confidence            3568899999999999999999974  67888888887654333322    5899999997543222222      2345


Q ss_pred             HhhccCCccEEEEEEeCCCC---CCcccHHHH-HHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          115 YFLNRESLVGVLLLIDASVP---PQKIDLDCA-NWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~---~~~~~~~~~-~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      |++-++.++.++||+|.+.+   .-....+.+ ..+.     -.+.|.++|.||+|+.+.+     ...++++.+++.. 
T Consensus       268 FLrHiER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae-----~~~l~~L~~~lq~-  341 (366)
T KOG1489|consen  268 FLRHIERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE-----KNLLSSLAKRLQN-  341 (366)
T ss_pred             HHHHHHhhceEEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH-----HHHHHHHHHHcCC-
Confidence            56666668999999999986   222222111 1111     1678999999999986431     1223455554442 


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                          ..++++||++++|+.++++.|.+.
T Consensus       342 ----~~V~pvsA~~~egl~~ll~~lr~~  365 (366)
T KOG1489|consen  342 ----PHVVPVSAKSGEGLEELLNGLREL  365 (366)
T ss_pred             ----CcEEEeeeccccchHHHHHHHhhc
Confidence                359999999999999999988764

>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins

Probab=99.76  E-value=4.4e-17  Score=125.28  Aligned_cols=151  Identities=23%  Similarity=0.259  Sum_probs=96.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      +|+++|++|+|||||+|+|++..  ......+++|....  ... .+..+.++||||+........      .+....+.
T Consensus         2 ~v~lvG~~~~GKStLl~~Ltg~~--~~v~~~~~tT~~~~~g~~~~~~~~i~l~DtpG~~~~~~~~~------~~~~~~l~   73 (233)
T cd01896           2 RVALVGFPSVGKSTLLSKLTNTK--SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGK------GRGRQVIA   73 (233)
T ss_pred             EEEEECCCCCCHHHHHHHHHCCC--ccccCCCCccccceEEEEEECCeEEEEEECCCcccccccch------hHHHHHHH
Confidence            78999999999999999999963  33444555554332  222 344788999999643211111      11122222


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHh--------------------------------------------c------
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWL--------------------------------------------G------  147 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~--------------------------------------------~------  147 (219)
                      ..+.+|++++|+|++++..... .+...+                                            +      
T Consensus        74 ~~~~ad~il~V~D~t~~~~~~~-~~~~~l~~~gi~l~~~~~~v~~~~~~~ggi~~~~~~~~~~~~~~~v~~~l~~~~i~~  152 (233)
T cd01896          74 VARTADLILMVLDATKPEGHRE-ILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHN  152 (233)
T ss_pred             hhccCCEEEEEecCCcchhHHH-HHHHHHHHcCceecCCCCeEEEEEEecCCEEEeccCCCCCCCHHHHHHHHHHhCeee
Confidence            2344899999999986543111 011111                                            1      


Q ss_pred             ---------------------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHH
Q 027757          148 ---------------------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDEL  206 (219)
Q Consensus       148 ---------------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el  206 (219)
                                           ...+|+++|+||+|+.+.       ++.+.+    ..    ..+++++||+++.|++++
T Consensus       153 ~~v~~~~~~~~~~~~~~~~~~~~y~p~iiV~NK~Dl~~~-------~~~~~~----~~----~~~~~~~SA~~g~gi~~l  217 (233)
T cd01896         153 ADVLIREDITVDDLIDVIEGNRVYIPCLYVYNKIDLISI-------EELDLL----AR----QPNSVVISAEKGLNLDEL  217 (233)
T ss_pred             EEEEEccCCCHHHHHHHHhCCceEeeEEEEEECccCCCH-------HHHHHH----hc----CCCEEEEcCCCCCCHHHH
Confidence                                 023699999999998653       223322    11    146899999999999999


Q ss_pred             HHHHHHHHh
Q 027757          207 LLHMSQLRN  215 (219)
Q Consensus       207 ~~~l~~~~~  215 (219)
                      ++.+.+.+.
T Consensus       218 ~~~i~~~L~  226 (233)
T cd01896         218 KERIWDKLG  226 (233)
T ss_pred             HHHHHHHhC
Confidence            999988654

GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.

>COG3596 Predicted GTPase [General function prediction only]

Probab=99.76  E-value=1.6e-17  Score=126.28  Aligned_cols=173  Identities=23%  Similarity=0.242  Sum_probs=117.1

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeE----EeeEEEecCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ----LINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWS  109 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~----~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~  109 (219)
                      .....+.+|+|+|.+|+|||||||+|++. ..+.++....++.    .+..+. ...+++|||||++.....   ..+++
T Consensus        34 l~~~~pvnvLi~G~TG~GKSSliNALF~~-~~~~v~~vg~~t~~~~~~~~~~~-~~~l~lwDtPG~gdg~~~---D~~~r  108 (296)
T COG3596          34 LTEKEPVNVLLMGATGAGKSSLINALFQG-EVKEVSKVGVGTDITTRLRLSYD-GENLVLWDTPGLGDGKDK---DAEHR  108 (296)
T ss_pred             hcccCceeEEEecCCCCcHHHHHHHHHhc-cCceeeecccCCCchhhHHhhcc-ccceEEecCCCcccchhh---hHHHH
Confidence            33455788999999999999999999976 3454443333332    222222 357899999999754321   12233


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccc-----cC----CCchHhHHHH
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVA-----KG----RRPDENIKSF  178 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~-----~~----~~~~~~~~~~  178 (219)
                      .....++..   .|++++++++.++.-..+.++++.+..  .+.++++++|++|...+.     ..    ....+.+++.
T Consensus       109 ~~~~d~l~~---~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k  185 (296)
T COG3596         109 QLYRDYLPK---LDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEK  185 (296)
T ss_pred             HHHHHHhhh---ccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhccccccccccCCCCHHHHHHHHHH
Confidence            333444444   899999999999776677666654443  568999999999976542     11    1112233444


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ...+...+.+..|+++.+...+.|++++...+.+.+
T Consensus       186 ~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~l  221 (296)
T COG3596         186 AEALGRLFQEVKPVVAVSGRLPWGLKELVRALITAL  221 (296)
T ss_pred             HHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhC
Confidence            445555666667899999999999999999998754

>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily

Probab=99.76  E-value=1.7e-17  Score=126.64  Aligned_cols=148  Identities=18%  Similarity=0.206  Sum_probs=90.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcc-----------------------------cccccCCCCeeEEeeEE---EecCeEE
Q 027757           41 EFAILGRSNVGKSSLINALVRKKE-----------------------------LALTSKKPGKTQLINHF---LVNKSWY   88 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~---~~~~~~~   88 (219)
                      .|+++|..++|||||+++|+...-                             ........++|.+....   ..+..+.
T Consensus         1 nv~i~Gh~~~GKttL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~E~~rg~T~d~~~~~~~~~~~~i~   80 (219)
T cd01883           1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT   80 (219)
T ss_pred             CEEEecCCCCChHHHHHHHHHHhcCcCHHHHHHHHHHHHhcCCcchhHHhhhcCCHHHhhCccCeecceEEEeeCCeEEE
Confidence            489999999999999999974310                             00011123445443322   2344799


Q ss_pred             EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-------CCcccHHHHHHhccCC-CcEEEEEEcc
Q 027757           89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-------PQKIDLDCANWLGRNN-IPLTFVFTKC  160 (219)
Q Consensus        89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~-~p~iiv~nK~  160 (219)
                      ++||||+.             .+...++.....+|++|+|+|++++       ...+..+........+ .|+++++||+
T Consensus        81 liDtpG~~-------------~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiivvNK~  147 (219)
T cd01883          81 ILDAPGHR-------------DFVPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKM  147 (219)
T ss_pred             EEECCChH-------------HHHHHHHHHhhhCCEEEEEEECCCCccccccccccchHHHHHHHHHcCCCeEEEEEEcc
Confidence            99999952             2233444445558999999999984       2223334344444444 6899999999


Q ss_pred             cccccccCCCchHhHHHHHHH----HHhcC--CCCCCeEEeecCCCCChH
Q 027757          161 DKMKVAKGRRPDENIKSFQQL----IRENY--PHHPPWIMTSSVTGLGRD  204 (219)
Q Consensus       161 D~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~Sa~~~~~v~  204 (219)
                      |+....   ......++..+.    +....  ...++++++||++|.|++
T Consensus       148 Dl~~~~---~~~~~~~~i~~~l~~~l~~~~~~~~~~~ii~iSA~tg~gi~  194 (219)
T cd01883         148 DDVTVN---WSEERYDEIKKELSPFLKKVGYNPKDVPFIPISGLTGDNLI  194 (219)
T ss_pred             cccccc---ccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecCcCCCCC
Confidence            987321   011223333332    22211  124789999999999986

EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in

>KOG0075 consensus GTP-binding ADP-ribosylation factor-like protein [General function prediction only]

Probab=99.75  E-value=1.7e-17  Score=114.03  Aligned_cols=158  Identities=17%  Similarity=0.183  Sum_probs=113.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC-eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK-SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      +..+.++|-.++|||||+|.+....+....-|+.|-  ....+..++ .+.++|.||          |-.|+++++-|++
T Consensus        20 emel~lvGLq~sGKtt~Vn~ia~g~~~edmiptvGf--nmrk~tkgnvtiklwD~gG----------q~rfrsmWerycR   87 (186)
T KOG0075|consen   20 EMELSLVGLQNSGKTTLVNVIARGQYLEDMIPTVGF--NMRKVTKGNVTIKLWDLGG----------QPRFRSMWERYCR   87 (186)
T ss_pred             eeeEEEEeeccCCcceEEEEEeeccchhhhcccccc--eeEEeccCceEEEEEecCC----------CccHHHHHHHHhh
Confidence            568999999999999999988875455444444442  222223333 578899987          5567899999999


Q ss_pred             ccCCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHP  190 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  190 (219)
                      +   +++++|++|++++.....  .++...+.+   .++|+++++||.|+.+.       -.-..+..+++...  ...+
T Consensus        88 ~---v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A-------L~~~~li~rmgL~sitdREv  157 (186)
T KOG0075|consen   88 G---VSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA-------LSKIALIERMGLSSITDREV  157 (186)
T ss_pred             c---CcEEEEEeecCCcccchhhHHHHHHHhcchhhcCCcEEEecccccCccc-------ccHHHHHHHhCccccccceE
Confidence            9   999999999998655432  233344443   68999999999998764       12234444443221  2246


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                      .+|.+|+++..|++-+.+||.++-+..+
T Consensus       158 cC~siScke~~Nid~~~~Wli~hsk~~~  185 (186)
T KOG0075|consen  158 CCFSISCKEKVNIDITLDWLIEHSKSLR  185 (186)
T ss_pred             EEEEEEEcCCccHHHHHHHHHHHhhhhc
Confidence            7899999999999999999998866543

>PLN00023 GTP-binding protein; Provisional

Probab=99.75  E-value=3.5e-17  Score=129.14  Aligned_cols=118  Identities=22%  Similarity=0.324  Sum_probs=88.7

Q ss_pred             CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----------------CeEEEEeCCCCC
Q 027757           33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----------------KSWYIVDLPGYG   96 (219)
Q Consensus        33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----------------~~~~liDtpg~~   96 (219)
                      ..+....+||+++|..|+|||||+++|++..+.....++.+.+.....+..+                ..+.+|||+|  
T Consensus        15 ~~~~~~~iKIVLLGdsGVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAG--   92 (334)
T PLN00023         15 GGPPCGQVRVLVVGDSGVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSG--   92 (334)
T ss_pred             cCCCccceEEEEECCCCCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCC--
Confidence            4556677999999999999999999999987766677777766543333321                1367777776  


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---c---------------CCCcEEEEEE
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG---R---------------NNIPLTFVFT  158 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---~---------------~~~p~iiv~n  158 (219)
                              ++.|..++..|++.   +|++|+|+|+++..++...  ..|+.   .               .++|+++|+|
T Consensus        93 --------qErfrsL~~~yyr~---AdgiILVyDITdr~SFenL--~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGN  159 (334)
T PLN00023         93 --------HERYKDCRSLFYSQ---INGVIFVHDLSQRRTKTSL--QKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGN  159 (334)
T ss_pred             --------ChhhhhhhHHhccC---CCEEEEEEeCCCHHHHHHH--HHHHHHHHHhcccccccccccccCCCCcEEEEEE
Confidence                    56678888999988   9999999999997766543  23332   1               1479999999


Q ss_pred             ccccccc
Q 027757          159 KCDKMKV  165 (219)
Q Consensus       159 K~D~~~~  165 (219)
                      |+|+...
T Consensus       160 K~DL~~~  166 (334)
T PLN00023        160 KADIAPK  166 (334)
T ss_pred             Ccccccc
Confidence            9999764

>PRK12735 elongation factor Tu; Reviewed

Probab=99.75  E-value=6.6e-17  Score=133.49  Aligned_cols=160  Identities=21%  Similarity=0.286  Sum_probs=105.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc------c--------cccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK------E--------LALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~------~--------~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~  100 (219)
                      ...+|+++|.+++|||||+++|++..      .        ........+.|.+......   +..+.++||||+.    
T Consensus        11 ~~~~i~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rGiT~~~~~~~~~~~~~~i~~iDtPGh~----   86 (396)
T PRK12735         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHA----   86 (396)
T ss_pred             CeEEEEEECcCCCCHHHHHHHHHHhhhhcCCcccchhhhccCChhHHhcCceEEEeeeEEcCCCcEEEEEECCCHH----
Confidence            35789999999999999999999621      0        0011123455554433222   3478999999962    


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhHH-HH
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENIK-SF  178 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~-~~  178 (219)
                               .+..........+|++++|+|+.++...+..+.+..+...++|.+ +++||+|+.+.+.   ..+.++ ++
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~~~~~~gi~~iivvvNK~Dl~~~~~---~~~~~~~ei  154 (396)
T PRK12735         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEE---LLELVEMEV  154 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEecCCcchHH---HHHHHHHHH
Confidence                     344455555666899999999998776666677777777788866 5799999974321   111111 22


Q ss_pred             HHHHHhcC--CCCCCeEEeecCCCC----------ChHHHHHHHHHH
Q 027757          179 QQLIRENY--PHHPPWIMTSSVTGL----------GRDELLLHMSQL  213 (219)
Q Consensus       179 ~~~~~~~~--~~~~~~~~~Sa~~~~----------~v~el~~~l~~~  213 (219)
                      ...+....  +...+++++||.++.          ++.+|++.|...
T Consensus       155 ~~~l~~~~~~~~~~~ii~~Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~  201 (396)
T PRK12735        155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEAKILELMDAVDSY  201 (396)
T ss_pred             HHHHHHcCCCcCceeEEecchhccccCCCCCcccccHHHHHHHHHhc
Confidence            22222211  124789999999984          678888887764

>CHL00071 tufA elongation factor Tu

Probab=99.75  E-value=6.1e-17  Score=134.24  Aligned_cols=150  Identities=19%  Similarity=0.249  Sum_probs=99.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------cccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE--------------LALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~   99 (219)
                      ....+|+++|.+++|||||+++|++..-              ........+.|.+.....   .+..+.++||||+.   
T Consensus        10 ~~~~~i~i~Gh~d~GKSTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~e~~rg~T~~~~~~~~~~~~~~~~~iDtPGh~---   86 (409)
T CHL00071         10 KPHVNIGTIGHVDHGKTTLTAAITMTLAAKGGAKAKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---   86 (409)
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHHHHhCccccccccccccccCChhhhcCCEeEEccEEEEccCCeEEEEEECCChH---
Confidence            3457899999999999999999997410              011112245555533222   23468999999963   


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhH-HH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENI-KS  177 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~-~~  177 (219)
                                .+..........+|++++|+|+..+...++.+.+..+...++| +++++||+|+.+.+..   .+.+ ++
T Consensus        87 ----------~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~~~~~~g~~~iIvvvNK~D~~~~~~~---~~~~~~~  153 (409)
T CHL00071         87 ----------DYVKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVDDEEL---LELVELE  153 (409)
T ss_pred             ----------HHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEccCCCCHHHH---HHHHHHH
Confidence                      2333334445558999999999998877878888888888889 7789999999753211   1111 12


Q ss_pred             HHHHHHhcC--CCCCCeEEeecCCCCC
Q 027757          178 FQQLIRENY--PHHPPWIMTSSVTGLG  202 (219)
Q Consensus       178 ~~~~~~~~~--~~~~~~~~~Sa~~~~~  202 (219)
                      +.+.+....  ....+++++||.+|.+
T Consensus       154 l~~~l~~~~~~~~~~~ii~~Sa~~g~n  180 (409)
T CHL00071        154 VRELLSKYDFPGDDIPIVSGSALLALE  180 (409)
T ss_pred             HHHHHHHhCCCCCcceEEEcchhhccc
Confidence            222232211  1237899999999863

>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]

Probab=99.75  E-value=1.1e-16  Score=122.17  Aligned_cols=162  Identities=20%  Similarity=0.284  Sum_probs=105.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .||+++|++|+|||||+++|.+..+.....++.+..........   ..++.+|||+|          ++.|+.++..|+
T Consensus         6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~g----------q~~~~~~~~~y~   75 (219)
T COG1100           6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRRNIKLQLWDTAG----------QEEYRSLRPEYY   75 (219)
T ss_pred             EEEEEEcCCCccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeCCCEEEEEeecCCC----------HHHHHHHHHHHh
Confidence            89999999999999999999998655545544443322222222   22467777766          778889999999


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHh---cc---CCCcEEEEEEcccccccccCCCc-------hHhHHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWL---GR---NNIPLTFVFTKCDKMKVAKGRRP-------DENIKSFQQLIR  183 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~---~~---~~~p~iiv~nK~D~~~~~~~~~~-------~~~~~~~~~~~~  183 (219)
                      ++   ++++++++|.....+..+. ...|.   ..   .+.|+++|+||+|+.........       ............
T Consensus        76 ~~---~~~~l~~~d~~~~~~~~~~-~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (219)
T COG1100          76 RG---ANGILIVYDSTLRESSDEL-TEEWLEELRELAPDDVPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAV  151 (219)
T ss_pred             cC---CCEEEEEEecccchhhhHH-HHHHHHHHHHhCCCCceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHh
Confidence            99   8999999999974443321 12222   22   36899999999999876321100       000111111111


Q ss_pred             hcCCCCCCeEEeecC--CCCChHHHHHHHHHHHh
Q 027757          184 ENYPHHPPWIMTSSV--TGLGRDELLLHMSQLRN  215 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~--~~~~v~el~~~l~~~~~  215 (219)
                      ........++++|++  .+.++++++..+.+.+.
T Consensus       152 ~~~~~~~~~~~~s~~~~~~~~v~~~~~~~~~~~~  185 (219)
T COG1100         152 LPEVANPALLETSAKSLTGPNVNELFKELLRKLL  185 (219)
T ss_pred             hhhhcccceeEeecccCCCcCHHHHHHHHHHHHH
Confidence            110111348999999  99999999998887664

>PRK00049 elongation factor Tu; Reviewed

Probab=99.75  E-value=9.3e-17  Score=132.57  Aligned_cols=160  Identities=19%  Similarity=0.284  Sum_probs=106.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc--------------ccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKEL--------------ALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~--------------~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~  100 (219)
                      ...+|+++|..++|||||+++|++....              .......+.|.+......   +..+.++||||+.    
T Consensus        11 ~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~i~~iDtPG~~----   86 (396)
T PRK00049         11 PHVNVGTIGHVDHGKTTLTAAITKVLAKKGGAEAKAYDQIDKAPEEKARGITINTAHVEYETEKRHYAHVDCPGHA----   86 (396)
T ss_pred             CEEEEEEEeECCCCHHHHHHHHHHhhhhccCCcccchhhccCChHHHhcCeEEeeeEEEEcCCCeEEEEEECCCHH----
Confidence            3578999999999999999999973100              011124455555433332   3478999999962    


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhHH-HH
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENIK-SF  178 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~-~~  178 (219)
                               .+..........+|++++|+|+.++...++.+.+.++...++|.+ +++||+|+.+.+..   .+.+. ++
T Consensus        87 ---------~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~~~~~~g~p~iiVvvNK~D~~~~~~~---~~~~~~~i  154 (396)
T PRK00049         87 ---------DYVKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEEL---LELVEMEV  154 (396)
T ss_pred             ---------HHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHHHHHHcCCCEEEEEEeecCCcchHHH---HHHHHHHH
Confidence                     233444455566999999999998877777788888888889976 58999999743110   11111 22


Q ss_pred             HHHHHhc-C-CCCCCeEEeecCCCC----------ChHHHHHHHHHH
Q 027757          179 QQLIREN-Y-PHHPPWIMTSSVTGL----------GRDELLLHMSQL  213 (219)
Q Consensus       179 ~~~~~~~-~-~~~~~~~~~Sa~~~~----------~v~el~~~l~~~  213 (219)
                      ...+... + ....+++++||.++.          ++.++++.|...
T Consensus       155 ~~~l~~~~~~~~~~~iv~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~  201 (396)
T PRK00049        155 RELLSKYDFPGDDTPIIRGSALKALEGDDDEEWEKKILELMDAVDSY  201 (396)
T ss_pred             HHHHHhcCCCccCCcEEEeecccccCCCCcccccccHHHHHHHHHhc
Confidence            2222221 1 234789999999875          467777777654

>cd04168 TetM_like Tet(M)-like subfamily

Probab=99.74  E-value=1.1e-16  Score=123.33  Aligned_cols=111  Identities=21%  Similarity=0.228  Sum_probs=77.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccc----ccc------------cCCCCeeEE---eeEEEecCeEEEEeCCCCCCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKEL----ALT------------SKKPGKTQL---INHFLVNKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~----~~~------------~~~~~~t~~---~~~~~~~~~~~liDtpg~~~~~~~  101 (219)
                      +|+++|..|+|||||+++|+...-.    ...            ....+.+..   ....+.+.++.++||||+..    
T Consensus         1 ni~i~G~~~~GKTtL~~~ll~~~g~i~~~g~v~~~~~~~D~~~~e~~rg~ti~~~~~~~~~~~~~i~liDTPG~~~----   76 (237)
T cd04168           1 NIGILAHVDAGKTTLTESLLYTSGAIRKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMD----   76 (237)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCccccccccCCcccCCCchhHhhCCCceeeeeEEEEECCEEEEEEeCCCccc----
Confidence            4899999999999999999874210    000            011112221   12223345899999999742    


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                            |......+++.   +|++++|+|+.++........++++...++|+++++||+|+..
T Consensus        77 ------f~~~~~~~l~~---aD~~IlVvd~~~g~~~~~~~~~~~~~~~~~P~iivvNK~D~~~  130 (237)
T cd04168          77 ------FIAEVERSLSV---LDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAG  130 (237)
T ss_pred             ------hHHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccccC
Confidence                  23334555666   8999999999998776666677777778999999999999874

Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.

>TIGR00485 EF-Tu translation elongation factor TU

Probab=99.74  E-value=7.2e-17  Score=133.32  Aligned_cols=149  Identities=21%  Similarity=0.283  Sum_probs=97.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc--------------cccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE--------------LALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~--------------~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~   99 (219)
                      ....+|+++|..++|||||+++|++...              ........+.|.+......   +..+.++||||+.   
T Consensus        10 ~~~~~i~i~Ghvd~GKStL~~~L~~~~~~~g~~~~~~~~~~d~~~~E~~rG~Ti~~~~~~~~~~~~~~~liDtpGh~---   86 (394)
T TIGR00485        10 KPHVNIGTIGHVDHGKTTLTAAITTVLAKEGGAAARAYDQIDNAPEEKARGITINTAHVEYETENRHYAHVDCPGHA---   86 (394)
T ss_pred             CceEEEEEEeecCCCHHHHHHHHHhhHHHhhcccccccccccCCHHHHhcCcceeeEEEEEcCCCEEEEEEECCchH---
Confidence            3467899999999999999999985310              0011122455554433333   3368999999963   


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhH-HH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENI-KS  177 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~-~~  177 (219)
                                .+...++.....+|++++|+|+.++...+..+.+.++...++|.+ +++||+|+.+.+..   .+.+ ++
T Consensus        87 ----------~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l~~~~~~gi~~iIvvvNK~Dl~~~~~~---~~~~~~~  153 (394)
T TIGR00485        87 ----------DYVKNMITGAAQMDGAILVVSATDGPMPQTREHILLARQVGVPYIVVFLNKCDMVDDEEL---LELVEME  153 (394)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEEecccCCHHHH---HHHHHHH
Confidence                      234455566566899999999998777777777888877788866 68999998753211   1111 12


Q ss_pred             HHHHHHhcCC--CCCCeEEeecCCCC
Q 027757          178 FQQLIRENYP--HHPPWIMTSSVTGL  201 (219)
Q Consensus       178 ~~~~~~~~~~--~~~~~~~~Sa~~~~  201 (219)
                      +...+.....  ..++++++||.++.
T Consensus       154 i~~~l~~~~~~~~~~~ii~vSa~~g~  179 (394)
T TIGR00485       154 VRELLSEYDFPGDDTPIIRGSALKAL  179 (394)
T ss_pred             HHHHHHhcCCCccCccEEECcccccc
Confidence            2222322211  23789999999874

This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.

>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]

Probab=99.74  E-value=1.4e-17  Score=126.05  Aligned_cols=126  Identities=17%  Similarity=0.255  Sum_probs=92.6

Q ss_pred             eEEEEeCCC-CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-----HHHHHHhccCCCcEEEEEEc
Q 027757           86 SWYIVDLPG-YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-----LDCANWLGRNNIPLTFVFTK  159 (219)
Q Consensus        86 ~~~liDtpg-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----~~~~~~~~~~~~p~iiv~nK  159 (219)
                      +++++|||| +.-..|+..|-..-+.+.-.+      .-+++||+|..+-.+...     +..+..+.+.++|+++|+||
T Consensus       117 ~~~liDTPGQIE~FtWSAsGsIIte~lass~------ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK  190 (366)
T KOG1532|consen  117 DYVLIDTPGQIEAFTWSASGSIITETLASSF------PTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNK  190 (366)
T ss_pred             CEEEEcCCCceEEEEecCCccchHhhHhhcC------CeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEec
Confidence            579999999 666788888865433332221      346899999886444333     24556677899999999999


Q ss_pred             ccccccccCCCchHhHHHHHHHHHh------------------cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          160 CDKMKVAKGRRPDENIKSFQQLIRE------------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       160 ~D~~~~~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +|+.+.+.......+++.+.+.+..                  .+....+.+-+|+.+|.|.++++..+.+.+..+
T Consensus       191 ~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~tG~G~ddf~~av~~~vdEy  266 (366)
T KOG1532|consen  191 TDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSVTGEGFDDFFTAVDESVDEY  266 (366)
T ss_pred             ccccccHHHHHHHHHHHHHHHHHHhhccchhHHhhhhHHHHHHHHHhhCceEEEecccCCcHHHHHHHHHHHHHHH
Confidence            9999987777777777777766653                  112247889999999999999999998876654

>PRK09866 hypothetical protein; Provisional

Probab=99.74  E-value=2.8e-16  Score=132.51  Aligned_cols=118  Identities=14%  Similarity=0.133  Sum_probs=80.9

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC--CcEEEEEEcccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN--IPLTFVFTKCDK  162 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~  162 (219)
                      .+++++||||+.......     ........+..   +|+|+||+|+.+..+..+..+.+.+...+  .|+++|+||+|+
T Consensus       230 ~QIIFVDTPGIhk~~~~~-----L~k~M~eqL~e---ADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl  301 (741)
T PRK09866        230 GQLTLLDTPGPNEAGQPH-----LQKMLNQQLAR---ASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQ  301 (741)
T ss_pred             CCEEEEECCCCCCccchH-----HHHHHHHHHhh---CCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccC
Confidence            468999999986432211     11122223444   89999999999877777777888887766  499999999998


Q ss_pred             cccccCCCchHhHHHHHHHH-HhcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          163 MKVAKGRRPDENIKSFQQLI-RENYPHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      .+...  ...+.+.++.... .........+|++||+.|.|++++++.|.+
T Consensus       302 ~dree--ddkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~  350 (741)
T PRK09866        302 QDRNS--DDADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELAN  350 (741)
T ss_pred             CCccc--chHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHh
Confidence            64321  1123444444322 222223457999999999999999999876

>KOG1191 consensus Mitochondrial GTPase [Translation, ribosomal structure and biogenesis]

Probab=99.74  E-value=5.3e-17  Score=131.87  Aligned_cols=169  Identities=22%  Similarity=0.196  Sum_probs=115.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+|+|+||+|||||+|+|... ....+++.+|+|++.-...   .+.++.++||.|+....-   ...+-..+....
T Consensus       268 gl~iaIvGrPNvGKSSLlNaL~~~-drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~---~~iE~~gI~rA~  343 (531)
T KOG1191|consen  268 GLQIAIVGRPNVGKSSLLNALSRE-DRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESN---DGIEALGIERAR  343 (531)
T ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC-CceEeCCCCCcchhhheeEeecCCeEEEEEeccccccccC---ChhHHHhHHHHH
Confidence            489999999999999999999997 7999999999999864333   344899999999875221   122222333333


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      . ..+.+|++++|+|+...++..+..+.+.+..            .+.|++++.||.|+...- .+....    -.....
T Consensus       344 k-~~~~advi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~-~~~~~~----~~~~~~  417 (531)
T KOG1191|consen  344 K-RIERADVILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKI-PEMTKI----PVVYPS  417 (531)
T ss_pred             H-HHhhcCEEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCcc-ccccCC----ceeccc
Confidence            2 2344899999999977667777665555542            347899999999987541 000000    000111


Q ss_pred             hcCC-CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          184 ENYP-HHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       184 ~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ..+. ......++|++++.|++.|...+.+.+..+
T Consensus       418 ~~~~~~~~i~~~vs~~tkeg~~~L~~all~~~~~~  452 (531)
T KOG1191|consen  418 AEGRSVFPIVVEVSCTTKEGCERLSTALLNIVERL  452 (531)
T ss_pred             cccCcccceEEEeeechhhhHHHHHHHHHHHHHHh
Confidence            1111 123456799999999999999998766543

>TIGR02034 CysN sulfate adenylyltransferase, large subunit

Probab=99.73  E-value=9.4e-17  Score=132.95  Aligned_cols=148  Identities=17%  Similarity=0.160  Sum_probs=93.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccc-cc------------c------------------cCCCCeeEEeeEE---EecC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKEL-AL------------T------------------SKKPGKTQLINHF---LVNK   85 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~-~~------------~------------------~~~~~~t~~~~~~---~~~~   85 (219)
                      ++|+++|..++|||||+++|+...-. ..            .                  ....+.|.+....   +.+.
T Consensus         1 ~~~~~vGhvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~D~~~eE~~rgiTid~~~~~~~~~~~   80 (406)
T TIGR02034         1 LRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGGEIDLALLVDGLQAEREQGITIDVAYRYFSTDKR   80 (406)
T ss_pred             CeEEEECCCCCCchhhhHHHHHHcCCcCHHHHHHHHHHHHhhCCCcCceeeeeeccCChHHhcCCcCeEeeeEEEccCCe
Confidence            48999999999999999999854200 00            0                  0111233332222   2244


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMK  164 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~  164 (219)
                      ++.++||||+.             .+..........+|++|+|+|+..+...++.+.+..+...+. ++++++||+|+.+
T Consensus        81 ~~~liDtPGh~-------------~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~~~~~~~~~~~~iivviNK~D~~~  147 (406)
T TIGR02034        81 KFIVADTPGHE-------------QYTRNMATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVD  147 (406)
T ss_pred             EEEEEeCCCHH-------------HHHHHHHHHHhhCCEEEEEEECCCCCccccHHHHHHHHHcCCCcEEEEEEeccccc
Confidence            79999999952             222223334445899999999998877777666665555444 5888999999875


Q ss_pred             cccCCCchHhHHHHHHHH----HhcCCCCCCeEEeecCCCCChHH
Q 027757          165 VAKGRRPDENIKSFQQLI----RENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      ..     .+.+++..+.+    ........+++++||++|.|+++
T Consensus       148 ~~-----~~~~~~i~~~~~~~~~~~~~~~~~iipiSA~~g~ni~~  187 (406)
T TIGR02034       148 YD-----EEVFENIKKDYLAFAEQLGFRDVTFIPLSALKGDNVVS  187 (406)
T ss_pred             ch-----HHHHHHHHHHHHHHHHHcCCCCccEEEeecccCCCCcc
Confidence            32     12222222222    22122346899999999999885

Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).

>KOG0083 consensus GTPase Rab26/Rab37, small G protein superfamily [General function prediction only]

Probab=99.73  E-value=1.2e-18  Score=117.89  Aligned_cols=153  Identities=20%  Similarity=0.253  Sum_probs=112.0

Q ss_pred             EEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC--CCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757           44 ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG--YGFAKAPDVTRMDWSSFTKGYFLNRES  121 (219)
Q Consensus        44 i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg--~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (219)
                      ++|.+++|||+|+-++-..-+.+.   ..     +..+-++.+-.++|..+  ...+.|++.||++|++....||+.   
T Consensus         2 llgds~~gktcllir~kdgafl~~---~f-----istvgid~rnkli~~~~~kvklqiwdtagqerfrsvt~ayyrd---   70 (192)
T KOG0083|consen    2 LLGDSCTGKTCLLIRFKDGAFLAG---NF-----ISTVGIDFRNKLIDMDDKKVKLQIWDTAGQERFRSVTHAYYRD---   70 (192)
T ss_pred             ccccCccCceEEEEEeccCceecC---ce-----eeeeeeccccceeccCCcEEEEEEeeccchHHHhhhhHhhhcc---
Confidence            689999999998876665433321   11     11112222222344333  344667777899999999999999   


Q ss_pred             ccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          122 LVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      +|+.++++|+.+..++.+.  ..|+.+      ..+.+.+++||||+..+  +.+..++-+.+.+.++      +|+.++
T Consensus        71 a~allllydiankasfdn~--~~wlsei~ey~k~~v~l~llgnk~d~a~e--r~v~~ddg~kla~~y~------ipfmet  140 (192)
T KOG0083|consen   71 ADALLLLYDIANKASFDNC--QAWLSEIHEYAKEAVALMLLGNKCDLAHE--RAVKRDDGEKLAEAYG------IPFMET  140 (192)
T ss_pred             cceeeeeeecccchhHHHH--HHHHHHHHHHHHhhHhHhhhccccccchh--hccccchHHHHHHHHC------CCceec
Confidence            9999999999998887653  345443      56889999999999764  5566677777777766      799999


Q ss_pred             ecCCCCChHHHHHHHHHHHhhh
Q 027757          196 SSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ||++|.|++-.|..|.+.+++.
T Consensus       141 saktg~nvd~af~~ia~~l~k~  162 (192)
T KOG0083|consen  141 SAKTGFNVDLAFLAIAEELKKL  162 (192)
T ss_pred             cccccccHhHHHHHHHHHHHHh
Confidence            9999999999999998877654

>PRK10218 GTP-binding protein; Provisional

Probab=99.73  E-value=1.5e-16  Score=136.48  Aligned_cols=159  Identities=19%  Similarity=0.189  Sum_probs=107.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc--cccc------------ccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK--ELAL------------TSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~--~~~~------------~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~  100 (219)
                      ...+|+|+|..++|||||+++|+...  +...            .....+.+......   +.+.++.+|||||+..   
T Consensus         4 ~iRnIaIiGh~d~GKTTLv~~Ll~~~g~~~~~~~~~~~v~D~~~~E~erGiTi~~~~~~i~~~~~~inliDTPG~~d---   80 (607)
T PRK10218          4 KLRNIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHAD---   80 (607)
T ss_pred             CceEEEEECCCCCcHHHHHHHHHHhcCCcccccccceeeeccccccccCceEEEEEEEEEecCCEEEEEEECCCcch---
Confidence            45789999999999999999999731  1111            11233444433222   2244799999999642   


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHH
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ  180 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  180 (219)
                             |...+..+++.   +|++|+|+|+.++...+....+.++...++|.++++||+|+....    ....++++.+
T Consensus        81 -------f~~~v~~~l~~---aDg~ILVVDa~~G~~~qt~~~l~~a~~~gip~IVviNKiD~~~a~----~~~vl~ei~~  146 (607)
T PRK10218         81 -------FGGEVERVMSM---VDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGAR----PDWVVDQVFD  146 (607)
T ss_pred             -------hHHHHHHHHHh---CCEEEEEEecccCccHHHHHHHHHHHHcCCCEEEEEECcCCCCCc----hhHHHHHHHH
Confidence                   23344556666   899999999998776666667777777899999999999986532    2233344444


Q ss_pred             HHHhc----CCCCCCeEEeecCCCC----------ChHHHHHHHHHH
Q 027757          181 LIREN----YPHHPPWIMTSSVTGL----------GRDELLLHMSQL  213 (219)
Q Consensus       181 ~~~~~----~~~~~~~~~~Sa~~~~----------~v~el~~~l~~~  213 (219)
                      .+...    ....+|++++||++|.          |+..|++.+.+.
T Consensus       147 l~~~l~~~~~~~~~PVi~~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~  193 (607)
T PRK10218        147 LFVNLDATDEQLDFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDH  193 (607)
T ss_pred             HHhccCccccccCCCEEEeEhhcCcccCCccccccchHHHHHHHHHh
Confidence            33221    1124789999999998          578888877664

>KOG4252 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.73  E-value=3.2e-18  Score=121.45  Aligned_cols=159  Identities=16%  Similarity=0.205  Sum_probs=116.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +..+|++|+|..++||||++++++...|-..+..+.+++.-.....       ++........|+++|++++..+.+.||
T Consensus        18 e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~-------v~~Edvr~mlWdtagqeEfDaItkAyy   90 (246)
T KOG4252|consen   18 ERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIK-------VLIEDVRSMLWDTAGQEEFDAITKAYY   90 (246)
T ss_pred             hhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHH-------hhHHHHHHHHHHhccchhHHHHHHHHh
Confidence            4578999999999999999999998755444444444332211111       111112235677778999999999999


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++   +.++++||..++..++.  ....|..+     .++|.++|-||+|+.++.  .....+.+.+.+.+.      ++
T Consensus        91 rg---aqa~vLVFSTTDr~SFe--a~~~w~~kv~~e~~~IPtV~vqNKIDlveds--~~~~~evE~lak~l~------~R  157 (246)
T KOG4252|consen   91 RG---AQASVLVFSTTDRYSFE--ATLEWYNKVQKETERIPTVFVQNKIDLVEDS--QMDKGEVEGLAKKLH------KR  157 (246)
T ss_pred             cc---ccceEEEEecccHHHHH--HHHHHHHHHHHHhccCCeEEeeccchhhHhh--hcchHHHHHHHHHhh------hh
Confidence            99   78899999999877653  44555543     789999999999998763  344556666666665      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+.+|++...|+.++|.+|.+...
T Consensus       158 lyRtSvked~NV~~vF~YLaeK~~  181 (246)
T KOG4252|consen  158 LYRTSVKEDFNVMHVFAYLAEKLT  181 (246)
T ss_pred             hhhhhhhhhhhhHHHHHHHHHHHH
Confidence            899999999999999999987543

>COG2229 Predicted GTPase [General function prediction only]

Probab=99.73  E-value=5.8e-16  Score=110.86  Aligned_cols=156  Identities=19%  Similarity=0.258  Sum_probs=114.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccc-----ccCCCC---eeEEe--eEEEec--CeEEEEeCCCCCCCCCCcch
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELAL-----TSKKPG---KTQLI--NHFLVN--KSWYIVDLPGYGFAKAPDVT  104 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~-----~~~~~~---~t~~~--~~~~~~--~~~~liDtpg~~~~~~~~~~  104 (219)
                      ....||+|.|+.++||||++.++....-...     .....+   +|...  .....+  ..+.+++|||          
T Consensus         8 ~~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPG----------   77 (187)
T COG2229           8 MIETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPG----------   77 (187)
T ss_pred             ccceeEEEEcccccchhhHHHHhhccccceeeccccccccccccceeEeecccceEEcCcceEEEecCCC----------
Confidence            4467999999999999999999998742111     111112   33332  222222  3789999998          


Q ss_pred             hhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          105 RMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      |.+|+.+++.+.++   +++.|+++|.+++.....++++..+...+ +|+++.+||.|+.+...    .+.+.++...  
T Consensus        78 q~RF~fm~~~l~~g---a~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~p----pe~i~e~l~~--  148 (187)
T COG2229          78 QERFKFMWEILSRG---AVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALP----PEKIREALKL--  148 (187)
T ss_pred             cHHHHHHHHHHhCC---cceEEEEEecCCCcchHHHHHHHHHhhccCCCEEEEeeccccCCCCC----HHHHHHHHHh--
Confidence            56778999999988   89999999999988876677777777766 99999999999987532    2333333332  


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                       .. ...+++..+|..+++..+.++.+...
T Consensus       149 -~~-~~~~vi~~~a~e~~~~~~~L~~ll~~  176 (187)
T COG2229         149 -EL-LSVPVIEIDATEGEGARDQLDVLLLK  176 (187)
T ss_pred             -cc-CCCceeeeecccchhHHHHHHHHHhh
Confidence             11 34799999999999999998887654

>PLN03127 Elongation factor Tu; Provisional

Probab=99.72  E-value=2.1e-16  Score=131.82  Aligned_cols=162  Identities=19%  Similarity=0.247  Sum_probs=104.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----c---------cccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-----E---------LALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~---------~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~   99 (219)
                      ...++|+++|..++|||||+++|.+..     .         ........+.|.+......   +.++.++||||+..  
T Consensus        59 k~~~ni~iiGhvd~GKSTL~~~L~~~~~~~g~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~~iDtPGh~~--  136 (447)
T PLN03127         59 KPHVNVGTIGHVDHGKTTLTAAITKVLAEEGKAKAVAFDEIDKAPEEKARGITIATAHVEYETAKRHYAHVDCPGHAD--  136 (447)
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHhHHHHhhcccceeeccccCChhHhhcCceeeeeEEEEcCCCeEEEEEECCCccc--
Confidence            446789999999999999999997421     0         0011223455655433333   33789999999741  


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHH-H
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIK-S  177 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~-~  177 (219)
                                 +..........+|++++|+|+.++...++.+.+.++...++| +++++||+|+.+.+.   ..+.++ +
T Consensus       137 -----------f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~~~~~~gip~iIvviNKiDlv~~~~---~~~~i~~~  202 (447)
T PLN03127        137 -----------YVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVVFLNKVDVVDDEE---LLELVEME  202 (447)
T ss_pred             -----------hHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEEEeeccCCHHH---HHHHHHHH
Confidence                       222222233348999999999988777888888888888999 578899999975321   111122 2


Q ss_pred             HHHHHHh-cC-CCCCCeEEeecC---CCCC-------hHHHHHHHHHHH
Q 027757          178 FQQLIRE-NY-PHHPPWIMTSSV---TGLG-------RDELLLHMSQLR  214 (219)
Q Consensus       178 ~~~~~~~-~~-~~~~~~~~~Sa~---~~~~-------v~el~~~l~~~~  214 (219)
                      +.+.+.. .+ ...++++++|+.   ++.|       +.+|+++|.+.+
T Consensus       203 i~~~l~~~~~~~~~vpiip~Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~l  251 (447)
T PLN03127        203 LRELLSFYKFPGDEIPIIRGSALSALQGTNDEIGKNAILKLMDAVDEYI  251 (447)
T ss_pred             HHHHHHHhCCCCCcceEEEeccceeecCCCcccccchHHHHHHHHHHhC
Confidence            2222221 11 234788888876   4444       678888877653

>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA

Probab=99.72  E-value=1.4e-16  Score=136.74  Aligned_cols=158  Identities=24%  Similarity=0.241  Sum_probs=105.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc--cccc------------ccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCCc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK--ELAL------------TSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAPD  102 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~--~~~~------------~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~~  102 (219)
                      .+|+|+|..++|||||+++|+...  +...            .....+.|...   ...+.+.++.+|||||+.      
T Consensus         2 RNIaIiGHvd~GKTTLv~~LL~~sg~~~~~~~v~~~~~D~~~~ErerGiTI~~~~~~v~~~~~kinlIDTPGh~------   75 (594)
T TIGR01394         2 RNIAIIAHVDHGKTTLVDALLKQSGTFRANEAVAERVMDSNDLERERGITILAKNTAIRYNGTKINIVDTPGHA------   75 (594)
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHhcCCCcccccceeecccCchHHHhCCccEEeeeEEEEECCEEEEEEECCCHH------
Confidence            479999999999999999998631  1110            01122333322   223345589999999963      


Q ss_pred             chhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757          103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI  182 (219)
Q Consensus       103 ~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  182 (219)
                          .|......+++.   +|++++|+|+.++...+....+.++...++|+++|+||+|+....    ..+..++..+.+
T Consensus        76 ----DF~~ev~~~l~~---aD~alLVVDa~~G~~~qT~~~l~~a~~~~ip~IVviNKiD~~~a~----~~~v~~ei~~l~  144 (594)
T TIGR01394        76 ----DFGGEVERVLGM---VDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSAR----PDEVVDEVFDLF  144 (594)
T ss_pred             ----HHHHHHHHHHHh---CCEEEEEEeCCCCCcHHHHHHHHHHHHCCCCEEEEEECCCCCCcC----HHHHHHHHHHHH
Confidence                223334455555   899999999998776666777777778899999999999986431    112223333333


Q ss_pred             HhcC----CCCCCeEEeecCCCC----------ChHHHHHHHHHHH
Q 027757          183 RENY----PHHPPWIMTSSVTGL----------GRDELLLHMSQLR  214 (219)
Q Consensus       183 ~~~~----~~~~~~~~~Sa~~~~----------~v~el~~~l~~~~  214 (219)
                      ....    ...+|++++||++|.          |+..+++.+.+.+
T Consensus       145 ~~~g~~~e~l~~pvl~~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~l  190 (594)
T TIGR01394       145 AELGADDEQLDFPIVYASGRAGWASLDLDDPSDNMAPLFDAIVRHV  190 (594)
T ss_pred             HhhccccccccCcEEechhhcCcccccCcccccCHHHHHHHHHHhC
Confidence            2111    123689999999996          7999998887654

This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.

>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha

Probab=99.72  E-value=1.2e-16  Score=133.39  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=92.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--ccc---------------------------cccCCCCeeEEeeEEEe---c
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK--ELA---------------------------LTSKKPGKTQLINHFLV---N   84 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~~---------------------------~~~~~~~~t~~~~~~~~---~   84 (219)
                      ....+|+++|..++|||||+++|+...  ...                           ......+.|.+......   +
T Consensus         5 ~~~~~v~i~Ghvd~GKSTL~~~ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~rg~Tid~~~~~~~~~~   84 (426)
T TIGR00483         5 KEHINVAFIGHVDHGKSTTVGHLLYKCGAIDEQTIEKFEKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHWKFETDK   84 (426)
T ss_pred             CceeEEEEEeccCCcHHHHHHHHHHHhCCcCHHHHHHHHhHHHhcCCcccchhhhhccCHHHhhcCceEEEEEEEEccCC
Confidence            346789999999999999999998521  100                           00112344444433222   3


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc---ccHHHHHHhccCC-CcEEEEEEcc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK---IDLDCANWLGRNN-IPLTFVFTKC  160 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~---~~~~~~~~~~~~~-~p~iiv~nK~  160 (219)
                      ..+.+|||||+.             .+...++.....+|++|+|+|++++.+.   +...........+ .|+++++||+
T Consensus        85 ~~i~iiDtpGh~-------------~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~~~~iIVviNK~  151 (426)
T TIGR00483        85 YEVTIVDCPGHR-------------DFIKNMITGASQADAAVLVVAVGDGEFEVQPQTREHAFLARTLGINQLIVAINKM  151 (426)
T ss_pred             eEEEEEECCCHH-------------HHHHHHHhhhhhCCEEEEEEECCCCCcccCCchHHHHHHHHHcCCCeEEEEEECh
Confidence            478999999952             2333444444558999999999987332   2222223333333 5789999999


Q ss_pred             cccccccCCCchHhHHHHHHHHHhcC-C-CCCCeEEeecCCCCChHH
Q 027757          161 DKMKVAKGRRPDENIKSFQQLIRENY-P-HHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       161 D~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~v~e  205 (219)
                      |+.+... +......+++.+.+.... . ...+++++||++|.|+.+
T Consensus       152 Dl~~~~~-~~~~~~~~ei~~~~~~~g~~~~~~~~i~iSA~~g~ni~~  197 (426)
T TIGR00483       152 DSVNYDE-EEFEAIKKEVSNLIKKVGYNPDTVPFIPISAWNGDNVIK  197 (426)
T ss_pred             hccCccH-HHHHHHHHHHHHHHHHcCCCcccceEEEeeccccccccc
Confidence            9964211 001111122222222211 1 246899999999999986

This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.

>cd01850 CDC_Septin CDC/Septin

Probab=99.71  E-value=2.9e-16  Score=123.48  Aligned_cols=128  Identities=16%  Similarity=0.233  Sum_probs=79.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC-------CCCee-EEe--eEEEec---CeEEEEeCCCCCCCCCCcc
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSK-------KPGKT-QLI--NHFLVN---KSWYIVDLPGYGFAKAPDV  103 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-------~~~~t-~~~--~~~~~~---~~~~liDtpg~~~~~~~~~  103 (219)
                      +..++|+++|.+|+|||||+|+|++.........       ...+. ...  .....+   .++.++||||++.......
T Consensus         2 g~~f~I~vvG~sg~GKSTliN~L~~~~~~~~~~~~~~~~~~~~~T~~i~~~~~~i~~~g~~~~l~iiDTpGfgd~~~~~~   81 (276)
T cd01850           2 GFQFNIMVVGESGLGKSTFINTLFNTKLIPSDYPPDPAEEHIDKTVEIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSD   81 (276)
T ss_pred             CcEEEEEEEcCCCCCHHHHHHHHHcCCCccccCCCCccccccCCceEEEEEEEEEEECCEEEEEEEEecCCccccccchh
Confidence            4568999999999999999999999853332111       11111 111  111222   2689999999875432211


Q ss_pred             h--------hhhHHHHHHHHh---h----ccCCccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757          104 T--------RMDWSSFTKGYF---L----NRESLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       104 ~--------~~~~~~~~~~~~---~----~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      .        ...|........   +    ....+|+++|+++++. .....+...++++.. ++|+++|+||+|+...
T Consensus        82 ~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~l~~-~v~vi~VinK~D~l~~  158 (276)
T cd01850          82 CWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSK-RVNIIPVIAKADTLTP  158 (276)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHHHhc-cCCEEEEEECCCcCCH
Confidence            0        001111111111   1    1113789999999885 555666778888876 7999999999999764

Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.

>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional

Probab=99.71  E-value=2.4e-16  Score=131.32  Aligned_cols=161  Identities=18%  Similarity=0.210  Sum_probs=102.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccc--ccCCCCeeEEeeE----------------------------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELAL--TSKKPGKTQLINH----------------------------------   80 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~--~~~~~~~t~~~~~----------------------------------   80 (219)
                      ....+|+++|...+|||||+.+|++.. ...  .....+.|.+..+                                  
T Consensus        32 ~~~~~ig~~GHVDhGKTtLv~aLtg~~-~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  110 (460)
T PTZ00327         32 QATINIGTIGHVAHGKSTVVKALSGVK-TVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCG  110 (460)
T ss_pred             CCcEEEEEEccCCCCHHHHHHHHhCCC-cccchhhHHhCCchhccccccccccCcccCCcccccccCCCccccccccccc
Confidence            446789999999999999999999852 110  0111111110000                                  


Q ss_pred             --EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCCC-cEEEE
Q 027757           81 --FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNNI-PLTFV  156 (219)
Q Consensus        81 --~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~-p~iiv  156 (219)
                        ......+.++||||+             +.+....+.+...+|++++|+|+.++ ...+..+.+..+...++ |+++|
T Consensus       111 ~~~~~~~~i~~IDtPGH-------------~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVv  177 (460)
T PTZ00327        111 HKMTLKRHVSFVDCPGH-------------DILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIIL  177 (460)
T ss_pred             ccccccceEeeeeCCCH-------------HHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEE
Confidence              011236899999995             23445555555668999999999985 34444555555444444 58899


Q ss_pred             EEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       157 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +||+|+.+.+..   .+..+++.+.+........+++++||++|.|+++|+++|.+.+
T Consensus       178 lNKiDlv~~~~~---~~~~~ei~~~l~~~~~~~~~iipVSA~~G~nI~~Ll~~L~~~l  232 (460)
T PTZ00327        178 QNKIDLVKEAQA---QDQYEEIRNFVKGTIADNAPIIPISAQLKYNIDVVLEYICTQI  232 (460)
T ss_pred             EecccccCHHHH---HHHHHHHHHHHHhhccCCCeEEEeeCCCCCCHHHHHHHHHhhC
Confidence            999999753211   1222222222322233457999999999999999999998643

>KOG0076 consensus GTP-binding ADP-ribosylation factor-like protein yARL3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.71  E-value=4e-17  Score=115.31  Aligned_cols=161  Identities=20%  Similarity=0.189  Sum_probs=109.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--------cCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhh
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALT--------SKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRM  106 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--------~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~  106 (219)
                      +...+-|+|+|..+||||||+.++-.. +...+        .++.+.  .+.+... +..+.+||..          ||+
T Consensus        14 ~Ke~y~vlIlgldnAGKttfLe~~Kt~-~~~~~~~l~~~ki~~tvgL--nig~i~v~~~~l~fwdlg----------GQe   80 (197)
T KOG0076|consen   14 KKEDYSVLILGLDNAGKTTFLEALKTD-FSKAYGGLNPSKITPTVGL--NIGTIEVCNAPLSFWDLG----------GQE   80 (197)
T ss_pred             hhhhhhheeeccccCCchhHHHHHHHH-HHhhhcCCCHHHeecccce--eecceeeccceeEEEEcC----------ChH
Confidence            344678999999999999999988765 33222        122221  1222222 2345566654          577


Q ss_pred             hHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHH
Q 027757          107 DWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL  181 (219)
Q Consensus       107 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~  181 (219)
                      ..+++++.||..   ++++|+++|+++++..+..     ++...-...+.|+++..||-|+.+..+    ..+++.....
T Consensus        81 ~lrSlw~~yY~~---~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~----~~El~~~~~~  153 (197)
T KOG0076|consen   81 SLRSLWKKYYWL---AHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAME----AAELDGVFGL  153 (197)
T ss_pred             HHHHHHHHHHHH---hceeEEeecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhhhh----HHHHHHHhhh
Confidence            789999999999   9999999999986655442     112222237899999999999877522    1333333333


Q ss_pred             HHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       182 ~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .........++.++||.+|.|++|-.+|+.+.+.+
T Consensus       154 ~e~~~~rd~~~~pvSal~gegv~egi~w~v~~~~k  188 (197)
T KOG0076|consen  154 AELIPRRDNPFQPVSALTGEGVKEGIEWLVKKLEK  188 (197)
T ss_pred             hhhcCCccCccccchhhhcccHHHHHHHHHHHHhh
Confidence            22223346889999999999999999999887654

>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional

Probab=99.70  E-value=1.7e-16  Score=138.31  Aligned_cols=150  Identities=19%  Similarity=0.161  Sum_probs=95.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc----------cCCC----------------------CeeEEeeE---E
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALT----------SKKP----------------------GKTQLINH---F   81 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~----------~~~~----------------------~~t~~~~~---~   81 (219)
                      ...++|+++|.+++|||||+++|+... ....          +...                      +.|.+...   .
T Consensus        22 ~~~~~i~iiGh~~~GKSTL~~~Ll~~~-~~i~~~~~~~~~~~~~~~g~tr~~~~~~~~~d~~~~E~~rg~Tid~~~~~~~  100 (632)
T PRK05506         22 KSLLRFITCGSVDDGKSTLIGRLLYDS-KMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFA  100 (632)
T ss_pred             CCeeEEEEECCCCCChHHHHHHHHHHh-CCcCHHHHHHHHHHHHhcCCCCCcceeeeeccCCHHHHhCCcCceeeeeEEc
Confidence            445789999999999999999999752 1111          0011                      22222211   1


Q ss_pred             EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcc
Q 027757           82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKC  160 (219)
Q Consensus        82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~  160 (219)
                      ..+.++.++||||+.             .+..........+|++++|+|+..+...++.+....+...+ .|+++++||+
T Consensus       101 ~~~~~~~liDtPG~~-------------~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~~~~~~~~~~~~iivvvNK~  167 (632)
T PRK05506        101 TPKRKFIVADTPGHE-------------QYTRNMVTGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHVVLAVNKM  167 (632)
T ss_pred             cCCceEEEEECCChH-------------HHHHHHHHHHHhCCEEEEEEECCCCccccCHHHHHHHHHhCCCeEEEEEEec
Confidence            224478999999952             22223333445589999999999887766666566555544 5688999999


Q ss_pred             cccccccCCCchHhHHHHHHHHH----hcCCCCCCeEEeecCCCCChHH
Q 027757          161 DKMKVAKGRRPDENIKSFQQLIR----ENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       161 D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      |+.+..     .+.+++....+.    .......+++++||++|.|+++
T Consensus       168 D~~~~~-----~~~~~~i~~~i~~~~~~~~~~~~~iipiSA~~g~ni~~  211 (632)
T PRK05506        168 DLVDYD-----QEVFDEIVADYRAFAAKLGLHDVTFIPISALKGDNVVT  211 (632)
T ss_pred             ccccch-----hHHHHHHHHHHHHHHHHcCCCCccEEEEecccCCCccc
Confidence            987421     122333322222    2222346799999999999874

>KOG0393 consensus Ras-related small GTPase, Rho type [General function prediction only]

Probab=99.70  E-value=2.2e-17  Score=121.06  Aligned_cols=156  Identities=17%  Similarity=0.177  Sum_probs=112.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-C---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-K---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..|++|+|..++|||+|+-.+....|...+.|+........ ..++ +   .+.+|||.|          |++|..++..
T Consensus         4 ~~K~VvVGDga~GKT~ll~~~t~~~fp~~yvPTVFdnys~~-v~V~dg~~v~L~LwDTAG----------qedYDrlRpl   72 (198)
T KOG0393|consen    4 RIKCVVVGDGAVGKTCLLISYTTNAFPEEYVPTVFDNYSAN-VTVDDGKPVELGLWDTAG----------QEDYDRLRPL   72 (198)
T ss_pred             eeEEEEECCCCcCceEEEEEeccCcCcccccCeEEccceEE-EEecCCCEEEEeeeecCC----------Cccccccccc
Confidence            57999999999999999999998877777777665333322 2221 2   355666655          6666665555


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEccccccccc----------CCCchHhHHHHH
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQ  179 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~  179 (219)
                      .|..   +|.++++|++.++.+..+.. -+|+.+     .+.|+++|++|.|+.+...          ..+..++..++.
T Consensus        73 sY~~---tdvfl~cfsv~~p~S~~nv~-~kW~pEi~~~cp~vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA  148 (198)
T KOG0393|consen   73 SYPQ---TDVFLLCFSVVSPESFENVK-SKWIPEIKHHCPNVPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELA  148 (198)
T ss_pred             CCCC---CCEEEEEEEcCChhhHHHHH-hhhhHHHHhhCCCCCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHH
Confidence            5555   89999999999998887532 345554     6899999999999985321          133444455555


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++.     ..|+++||+++.|++++|+...+.+
T Consensus       149 ~~iga-----~~y~EcSa~tq~~v~~vF~~a~~~~  178 (198)
T KOG0393|consen  149 KEIGA-----VKYLECSALTQKGVKEVFDEAIRAA  178 (198)
T ss_pred             HHhCc-----ceeeeehhhhhCCcHHHHHHHHHHH
Confidence            55554     6899999999999999999887765

>PLN03126 Elongation factor Tu; Provisional

Probab=99.70  E-value=8.3e-16  Score=128.92  Aligned_cols=149  Identities=19%  Similarity=0.284  Sum_probs=98.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc------cc--------ccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK------EL--------ALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~------~~--------~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~   99 (219)
                      ...++|+++|.+++|||||+++|++..      ..        .......+.|.+....   ..+..+.++||||+.   
T Consensus        79 k~~~ni~iiGhvd~GKSTLi~~Ll~~~~~i~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~i~liDtPGh~---  155 (478)
T PLN03126         79 KPHVNIGTIGHVDHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVDCPGHA---  155 (478)
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHHHhhhhhccccccccccccCChhHHhCCeeEEEEEEEEecCCcEEEEEECCCHH---
Confidence            446789999999999999999999631      00        0112233444433222   234579999999963   


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHH-H
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIK-S  177 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~-~  177 (219)
                                .+....+.....+|++++|+|+.++...+..+.+..+...++| +++++||+|+.+.+..   .+.+. +
T Consensus       156 ----------~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~~~~~~~gi~~iIvvvNK~Dl~~~~~~---~~~i~~~  222 (478)
T PLN03126        156 ----------DYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNKQDQVDDEEL---LELVELE  222 (478)
T ss_pred             ----------HHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEecccccCHHHH---HHHHHHH
Confidence                      2334444555558999999999998877777888888888888 7789999999753211   11122 2


Q ss_pred             HHHHHHhc-CC-CCCCeEEeecCCCC
Q 027757          178 FQQLIREN-YP-HHPPWIMTSSVTGL  201 (219)
Q Consensus       178 ~~~~~~~~-~~-~~~~~~~~Sa~~~~  201 (219)
                      +...+... +. ...+++++|+.++.
T Consensus       223 i~~~l~~~g~~~~~~~~vp~Sa~~g~  248 (478)
T PLN03126        223 VRELLSSYEFPGDDIPIISGSALLAL  248 (478)
T ss_pred             HHHHHHhcCCCcCcceEEEEEccccc
Confidence            22223221 12 35789999998874

>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional

Probab=99.70  E-value=2.7e-16  Score=132.28  Aligned_cols=152  Identities=17%  Similarity=0.149  Sum_probs=95.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-ccc------------cc------------------CCCCeeEEeeEE---E
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE-LAL------------TS------------------KKPGKTQLINHF---L   82 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~~~------------~~------------------~~~~~t~~~~~~---~   82 (219)
                      ...++|+++|..++|||||+++|+...- ...            ..                  ...+.|.+....   .
T Consensus        25 ~~~~~i~iiGhvdaGKSTL~~~LL~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~a~~~D~~~eEr~rgiTid~~~~~~~~  104 (474)
T PRK05124         25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST  104 (474)
T ss_pred             cCceEEEEECCCCCChHHHHHHHHHhcCCCcHHHHHHHHHHHHhcCCCccccchhhhccCChHHhhcCCCeEeeEEEecc
Confidence            4568999999999999999999986521 000            00                  011233332221   2


Q ss_pred             ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEccc
Q 027757           83 VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCD  161 (219)
Q Consensus        83 ~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D  161 (219)
                      .+.++.++||||+.             .+..........+|++++|+|+..+...++.+....+...+ .|+++++||+|
T Consensus       105 ~~~~i~~iDTPGh~-------------~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~~l~~~lg~~~iIvvvNKiD  171 (474)
T PRK05124        105 EKRKFIIADTPGHE-------------QYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMD  171 (474)
T ss_pred             CCcEEEEEECCCcH-------------HHHHHHHHHHhhCCEEEEEEECCCCccccchHHHHHHHHhCCCceEEEEEeec
Confidence            24479999999952             12222233345589999999999877665554444444433 47899999999


Q ss_pred             ccccccCCCchHhHHHHHHHHHh---cC--CCCCCeEEeecCCCCChHHH
Q 027757          162 KMKVAKGRRPDENIKSFQQLIRE---NY--PHHPPWIMTSSVTGLGRDEL  206 (219)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~Sa~~~~~v~el  206 (219)
                      +....     .+.+++..+.+..   .+  ....+++++||++|.|++++
T Consensus       172 ~~~~~-----~~~~~~i~~~l~~~~~~~~~~~~~~iipvSA~~g~ni~~~  216 (474)
T PRK05124        172 LVDYS-----EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVVSQ  216 (474)
T ss_pred             cccch-----hHHHHHHHHHHHHHHHhcCCCCCceEEEEEeecCCCcccc
Confidence            87431     1223333333321   11  23478999999999998764

>KOG0070 consensus GTP-binding ADP-ribosylation factor Arf1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.1e-16  Score=113.20  Aligned_cols=161  Identities=18%  Similarity=0.168  Sum_probs=115.7

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ......+|+++|--+|||||++.+|-... .-.+.|+.|.......+. +..+.+||..|          |..++.+++.
T Consensus        13 ~~~~e~~IlmlGLD~AGKTTILykLk~~E-~vttvPTiGfnVE~v~yk-n~~f~vWDvGG----------q~k~R~lW~~   80 (181)
T KOG0070|consen   13 FGKKEMRILMVGLDAAGKTTILYKLKLGE-IVTTVPTIGFNVETVEYK-NISFTVWDVGG----------QEKLRPLWKH   80 (181)
T ss_pred             cCcceEEEEEEeccCCCceeeeEeeccCC-cccCCCccccceeEEEEc-ceEEEEEecCC----------Ccccccchhh
Confidence            34557899999999999999999998873 444466666444333222 55788888876          4556778999


Q ss_pred             HhhccCCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYP  187 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~  187 (219)
                      |+.+   .+++|||+|.++.+...+  .++.+.+..   ...|+++..||.|+...-       ...++.+.+..  ...
T Consensus        81 Y~~~---t~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~al-------s~~ei~~~L~l~~l~~  150 (181)
T KOG0070|consen   81 YFQN---TQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGAL-------SAAEITNKLGLHSLRS  150 (181)
T ss_pred             hccC---CcEEEEEEeCCcHHHHHHHHHHHHHHHcCcccCCceEEEEechhhccccC-------CHHHHHhHhhhhccCC
Confidence            9999   899999999998655443  234444443   478999999999987652       23333333332  222


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ....+-.++|.+|+|+.|-++|+.+.++..
T Consensus       151 ~~w~iq~~~a~~G~GL~egl~wl~~~~~~~  180 (181)
T KOG0070|consen  151 RNWHIQSTCAISGEGLYEGLDWLSNNLKKR  180 (181)
T ss_pred             CCcEEeeccccccccHHHHHHHHHHHHhcc
Confidence            345678899999999999999999887764

>cd04167 Snu114p Snu114p subfamily

Probab=99.69  E-value=6e-16  Score=117.70  Aligned_cols=110  Identities=20%  Similarity=0.244  Sum_probs=72.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccccc-----------cc------CCCCeeEEeeEE---E-----ecCeEEEEeCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELAL-----------TS------KKPGKTQLINHF---L-----VNKSWYIVDLPGY   95 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~-----------~~------~~~~~t~~~~~~---~-----~~~~~~liDtpg~   95 (219)
                      +|+++|..|+|||||+++|+.......           ..      ...+.+......   .     ....+.++||||.
T Consensus         2 nv~iiG~~~~GKTtL~~~l~~~~~~~~~~~~~~~~~~~~~d~~~~e~~~giti~~~~~~~~~~~~~~~~~~i~iiDtpG~   81 (213)
T cd04167           2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH   81 (213)
T ss_pred             cEEEEcCCCCCHHHHHHHHHHhcCCCcccccccCCceeECCCCHHHHHcCccccccceeEEEEcCCCCEEEEEEEECCCC
Confidence            689999999999999999997531110           00      111222111111   1     1236899999996


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ..          |......++..   +|++|+|+|+.++.+.......+.+...+.|+++|+||+|+.
T Consensus        82 ~~----------f~~~~~~~~~~---aD~~llVvD~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~  136 (213)
T cd04167          82 VN----------FMDEVAAALRL---SDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL  136 (213)
T ss_pred             cc----------hHHHHHHHHHh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccC
Confidence            42          22333444555   899999999998776655454555555679999999999986

Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.

>cd01886 EF-G Elongation factor G (EF-G) subfamily

Probab=99.68  E-value=6.8e-16  Score=120.95  Aligned_cols=111  Identities=17%  Similarity=0.198  Sum_probs=78.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcc----cccc------------cCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKE----LALT------------SKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~----~~~~------------~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~  101 (219)
                      .|+++|.+|+|||||+++|+...-    ...+            ....+.+...   ...+.+.++.++||||+..    
T Consensus         1 nv~ivGh~~~GKTtL~~~Ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~d----   76 (270)
T cd01886           1 NIGIIAHIDAGKTTTTERILYYTGRIHKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVD----   76 (270)
T ss_pred             CEEEEcCCCCCHHHHHHHHHHHcCCCcccccccCCccccCCCccccCCCcCeeccEEEEEECCEEEEEEECCCcHH----
Confidence            489999999999999999974210    0001            1122334332   2223355899999999642    


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                            +......+++.   +|++|+|+|+.++....+...++.+...++|+++++||+|+..
T Consensus        77 ------f~~~~~~~l~~---aD~ailVVDa~~g~~~~t~~~~~~~~~~~~p~ivviNK~D~~~  130 (270)
T cd01886          77 ------FTIEVERSLRV---LDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTG  130 (270)
T ss_pred             ------HHHHHHHHHHH---cCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence                  12233445555   8999999999998777777788888888999999999999874

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta

>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases

Probab=99.68  E-value=2e-16  Score=109.22  Aligned_cols=108  Identities=28%  Similarity=0.370  Sum_probs=68.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccc--ccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           41 EFAILGRSNVGKSSLINALVRKKEL--ALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~--~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ||+|+|++|+|||||+++|++..+.  .......+.+..........   .+.++|++|..          .+......+
T Consensus         1 kI~V~G~~g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~   70 (119)
T PF08477_consen    1 KIVVLGDSGVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVDGDRQSLQFWDFGGQE----------EFYSQHQFF   70 (119)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSS--------SSTTSCEEEEEEEETTEEEEEEEEEESSSH----------CHHCTSHHH
T ss_pred             CEEEECcCCCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEecCCceEEEEEecCccc----------eecccccch
Confidence            7999999999999999999997544  12223333333322222222   37788998852          122222233


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc-----CCCcEEEEEEccc
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR-----NNIPLTFVFTKCD  161 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~nK~D  161 (219)
                      +..   +|++++|+|++++.+.... .+..|+..     .++|+++|+||.|
T Consensus        71 ~~~---~d~~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D  119 (119)
T PF08477_consen   71 LKK---ADAVILVYDLSDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD  119 (119)
T ss_dssp             HHH---SCEEEEEEECCGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred             hhc---CcEEEEEEcCCChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence            444   8999999999987766553 33344443     4699999999998

They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.

>PTZ00141 elongation factor 1- alpha; Provisional

Probab=99.68  E-value=1.9e-15  Score=126.25  Aligned_cols=152  Identities=17%  Similarity=0.203  Sum_probs=98.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-c----------------------------ccccCCCCeeEEeeEEE---ecC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE-L----------------------------ALTSKKPGKTQLINHFL---VNK   85 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~-~----------------------------~~~~~~~~~t~~~~~~~---~~~   85 (219)
                      ...+|+++|..++|||||+.+|+...- .                            .......+.|.+.....   .+.
T Consensus         6 ~~~nv~i~Ghvd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~s~~~a~~~D~~~~Er~rGiTid~~~~~~~~~~~   85 (446)
T PTZ00141          6 THINLVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKY   85 (446)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHcCCcChHHHHHHhhHHHhhCCcchhhhhhhcCChHHHhcCEeEEeeeEEEccCCe
Confidence            357899999999999999999986210 0                            00112224444433322   234


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCCc-EEEEE
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNIP-LTFVF  157 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~  157 (219)
                      .+.++||||+.             .+..........+|++|+|+|+..+.       ..+..+.+..+...++| +++++
T Consensus        86 ~i~lIDtPGh~-------------~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~gi~~iiv~v  152 (446)
T PTZ00141         86 YFTIIDAPGHR-------------DFIKNMITGTSQADVAILVVASTAGEFEAGISKDGQTREHALLAFTLGVKQMIVCI  152 (446)
T ss_pred             EEEEEECCChH-------------HHHHHHHHhhhhcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcCCCeEEEEE
Confidence            78999999952             33444455555699999999999875       24556777777778887 67899


Q ss_pred             EcccccccccCCCchHhHHHHHHHHHhcC-----C-CCCCeEEeecCCCCChHH
Q 027757          158 TKCDKMKVAKGRRPDENIKSFQQLIRENY-----P-HHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       158 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~Sa~~~~~v~e  205 (219)
                      ||+|....+   ..++.+++..+++...+     . ..++++++|+.+|.|+.+
T Consensus       153 NKmD~~~~~---~~~~~~~~i~~~i~~~l~~~g~~~~~~~~ipiSa~~g~ni~~  203 (446)
T PTZ00141        153 NKMDDKTVN---YSQERYDEIKKEVSAYLKKVGYNPEKVPFIPISGWQGDNMIE  203 (446)
T ss_pred             Eccccccch---hhHHHHHHHHHHHHHHHHhcCCCcccceEEEeecccCCCccc
Confidence            999953210   11233444444333321     1 247899999999999864

>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily

Probab=99.67  E-value=8.6e-16  Score=120.81  Aligned_cols=111  Identities=18%  Similarity=0.262  Sum_probs=74.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccc----ccc-CC-----------CCeeE--EeeEE-EecCeEEEEeCCCCCCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELA----LTS-KK-----------PGKTQ--LINHF-LVNKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~----~~~-~~-----------~~~t~--~~~~~-~~~~~~~liDtpg~~~~~~~  101 (219)
                      +|+++|.+|+|||||+++|++.....    ... ..           .+.+.  ....+ +.+..+.++||||..     
T Consensus         1 ni~ivG~~gsGKStL~~~Ll~~~g~~~~~g~v~~g~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG~~-----   75 (268)
T cd04170           1 NIALVGHSGSGKTTLAEALLYATGAIDRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYA-----   75 (268)
T ss_pred             CEEEECCCCCCHHHHHHHHHHhcCCCccCCeecCCcccCCCCHHHHhhcccccceeEEEEECCEEEEEEECcCHH-----
Confidence            48999999999999999998642110    000 00           01111  11112 234478999999963     


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                           .|......+++.   +|++++|+|++.+........++++...++|.++++||+|+..
T Consensus        76 -----~f~~~~~~~l~~---aD~~i~Vvd~~~g~~~~~~~~~~~~~~~~~p~iivvNK~D~~~  130 (268)
T cd04170          76 -----DFVGETRAALRA---ADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRER  130 (268)
T ss_pred             -----HHHHHHHHHHHH---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCccCC
Confidence                 122233444555   8999999999988776666677777788999999999999875

Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group

>KOG1490 consensus GTP-binding protein CRFG/NOG1 (ODN superfamily) [General function prediction only]

Probab=99.66  E-value=2.1e-16  Score=128.52  Aligned_cols=168  Identities=20%  Similarity=0.146  Sum_probs=121.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cC-eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NK-SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~-~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ......++|+|.+++|||||+|.++..  ...+.++..||........  ++ .+..+||||+........+.+++.+++
T Consensus       165 Dp~trTlllcG~PNVGKSSf~~~vtra--dvevqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT  242 (620)
T KOG1490|consen  165 DPNTRTLLVCGYPNVGKSSFNNKVTRA--DDEVQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT  242 (620)
T ss_pred             CCCcCeEEEecCCCCCcHhhccccccc--ccccCCcccccchhhhhhhhhheeeeeecCCccccCcchhhhhHHHHHHHH
Confidence            456679999999999999999999986  4678888888886533333  22 688999999988877777777777776


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---c--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG---R--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ...-..    .+|+|++|.+......-.+..+.++   .  .+.|+|+|+||+|+...+..   .+.-+++.+.+....+
T Consensus       243 ALAHLr----aaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL---~~~~~~ll~~~~~~~~  315 (620)
T KOG1490|consen  243 ALAHLR----SAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDL---DQKNQELLQTIIDDGN  315 (620)
T ss_pred             HHHHhh----hhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccccCcccc---CHHHHHHHHHHHhccC
Confidence            653322    3599999999855444333233333   2  68999999999999875433   2334445555544333


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                        ++++.+|+.+.+|+.++....++.+
T Consensus       316 --v~v~~tS~~~eegVm~Vrt~ACe~L  340 (620)
T KOG1490|consen  316 --VKVVQTSCVQEEGVMDVRTTACEAL  340 (620)
T ss_pred             --ceEEEecccchhceeeHHHHHHHHH
Confidence              6899999999999999887776643

>cd01885 EF2 EF2 (for archaea and eukarya)

Probab=99.66  E-value=5.3e-15  Score=112.57  Aligned_cols=110  Identities=18%  Similarity=0.190  Sum_probs=76.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCccc-c-cc------------cCCCCeeEEe---e-EEE-e--------cCeEEEEeCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKEL-A-LT------------SKKPGKTQLI---N-HFL-V--------NKSWYIVDLP   93 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~-~-~~------------~~~~~~t~~~---~-~~~-~--------~~~~~liDtp   93 (219)
                      .|+++|..++|||||+++|+...-. . ..            ....+.|...   . .+. .        +..+.++|||
T Consensus         2 NvaiiGhvd~GKTTL~d~Ll~~~g~i~~~~~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTP   81 (222)
T cd01885           2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP   81 (222)
T ss_pred             eEEEECCCCCCHHHHHHHHHHHcCCCccccCCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCC
Confidence            6899999999999999999864210 0 00            0011111111   1 111 1        3468899999


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      |+..          |......+++.   +|++++|+|+.++........++.....++|+++|+||+|+.
T Consensus        82 G~~~----------f~~~~~~~l~~---aD~~ilVvD~~~g~~~~t~~~l~~~~~~~~p~ilviNKiD~~  138 (222)
T cd01885          82 GHVD----------FSSEVTAALRL---CDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL  138 (222)
T ss_pred             Cccc----------cHHHHHHHHHh---cCeeEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECCCcc
Confidence            9642          34455566666   899999999999888777777777777789999999999986

Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco

>PTZ00099 rab6; Provisional

Probab=99.66  E-value=4.5e-15  Score=109.42  Aligned_cols=130  Identities=13%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             ccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH
Q 027757           64 ELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL  140 (219)
Q Consensus        64 ~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~  140 (219)
                      |...+.++.+.......+..+   ..+.+|||||.          +.+..++..+++.   +|++|+|+|++++.++...
T Consensus         5 F~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDt~G~----------e~~~~~~~~~~~~---ad~~ilv~D~t~~~sf~~~   71 (176)
T PTZ00099          5 FDNNYQSTIGIDFLSKTLYLDEGPVRLQLWDTAGQ----------ERFRSLIPSYIRD---SAAAIVVYDITNRQSFENT   71 (176)
T ss_pred             cCCCCCCccceEEEEEEEEECCEEEEEEEEECCCh----------HHhhhccHHHhCC---CcEEEEEEECCCHHHHHHH
Confidence            444555666655433333333   26889999984          3456677788877   9999999999997766543


Q ss_pred             HHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          141 DCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       141 ~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                        ..|+.      ....|+++|+||+|+...  +.+..++...+.+.+    +  ..++++||++|.|++++|++|.+.+
T Consensus        72 --~~w~~~i~~~~~~~~piilVgNK~DL~~~--~~v~~~e~~~~~~~~----~--~~~~e~SAk~g~nV~~lf~~l~~~l  141 (176)
T PTZ00099         72 --TKWIQDILNERGKDVIIALVGNKTDLGDL--RKVTYEEGMQKAQEY----N--TMFHETSAKAGHNIKVLFKKIAAKL  141 (176)
T ss_pred             --HHHHHHHHHhcCCCCeEEEEEECcccccc--cCCCHHHHHHHHHHc----C--CEEEEEECCCCCCHHHHHHHHHHHH
Confidence              22222      246889999999998653  223333333333322    2  4789999999999999999999876


Q ss_pred             hh
Q 027757          215 NY  216 (219)
Q Consensus       215 ~~  216 (219)
                      ..
T Consensus       142 ~~  143 (176)
T PTZ00099        142 PN  143 (176)
T ss_pred             Hh
Confidence            44

>PRK00741 prfC peptide chain release factor 3; Provisional

Probab=99.65  E-value=6.4e-15  Score=125.07  Aligned_cols=115  Identities=20%  Similarity=0.204  Sum_probs=76.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-ccc---cc----------c------CCCCeeEEe---eEEEecCeEEEEeCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-ELA---LT----------S------KKPGKTQLI---NHFLVNKSWYIVDLP   93 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~---~~----------~------~~~~~t~~~---~~~~~~~~~~liDtp   93 (219)
                      ..+.+|+|+|.+|+|||||+++|+... ...   .+          +      ...+.+...   ...+.+..+.++|||
T Consensus         8 ~~~Rni~IiGh~daGKTTL~e~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rgiSi~~~~~~~~~~~~~inliDTP   87 (526)
T PRK00741          8 AKRRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTP   87 (526)
T ss_pred             hcCCEEEEECCCCCCHHHHHHHHHHhCCCccccceeeccccCccccCCCcHHHHhhCCceeeeeEEEEECCEEEEEEECC
Confidence            346799999999999999999997421 000   00          0      001111111   122234579999999


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      |+..          |......+++.   +|++|+|+|++++.......++......++|+++++||+|+..
T Consensus        88 G~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~~t~~l~~~~~~~~iPiiv~iNK~D~~~  145 (526)
T PRK00741         88 GHED----------FSEDTYRTLTA---VDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDG  145 (526)
T ss_pred             Cchh----------hHHHHHHHHHH---CCEEEEEEecCCCCCHHHHHHHHHHHhcCCCEEEEEECCcccc
Confidence            9632          12223334444   8999999999987766666677777778999999999999754

>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]

Probab=99.65  E-value=2.7e-15  Score=100.57  Aligned_cols=143  Identities=22%  Similarity=0.272  Sum_probs=97.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      .|++++|+.|+|||||++++-|.....  ..+-    .+.   .+.+ ..+||||.-+.     ++.-|+++.-.    .
T Consensus         2 Kri~~vG~~gcGKTtL~q~L~G~~~ly--kKTQ----Ave---~~d~-~~IDTPGEy~~-----~~~~Y~aL~tt----~   62 (148)
T COG4917           2 KRIAFVGQVGCGKTTLFQSLYGNDTLY--KKTQ----AVE---FNDK-GDIDTPGEYFE-----HPRWYHALITT----L   62 (148)
T ss_pred             ceeEEecccccCchhHHHHhhcchhhh--cccc----eee---ccCc-cccCCchhhhh-----hhHHHHHHHHH----h
Confidence            479999999999999999999974222  1111    111   1111 25899994322     34444444333    4


Q ss_pred             CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          120 ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      +.+|.+++|-.++++.+....   .++.....|+|-|++|.|+...       ++++...+.+.+.+  ..++|.+|+.+
T Consensus        63 ~dadvi~~v~~and~~s~f~p---~f~~~~~k~vIgvVTK~DLaed-------~dI~~~~~~L~eaG--a~~IF~~s~~d  130 (148)
T COG4917          63 QDADVIIYVHAANDPESRFPP---GFLDIGVKKVIGVVTKADLAED-------ADISLVKRWLREAG--AEPIFETSAVD  130 (148)
T ss_pred             hccceeeeeecccCccccCCc---ccccccccceEEEEecccccch-------HhHHHHHHHHHHcC--CcceEEEeccC
Confidence            558999999999998776543   3344455679999999999853       35555555555443  25899999999


Q ss_pred             CCChHHHHHHHHHH
Q 027757          200 GLGRDELLLHMSQL  213 (219)
Q Consensus       200 ~~~v~el~~~l~~~  213 (219)
                      ..|+++++++|...
T Consensus       131 ~~gv~~l~~~L~~~  144 (148)
T COG4917         131 NQGVEELVDYLASL  144 (148)
T ss_pred             cccHHHHHHHHHhh
Confidence            99999999998653

>PRK13351 elongation factor G; Reviewed

Probab=99.65  E-value=5.1e-15  Score=130.38  Aligned_cols=118  Identities=19%  Similarity=0.188  Sum_probs=82.4

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcc-c---ccc------c------CCCCeeEE---eeEEEecCeEEEEeCCC
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKKE-L---ALT------S------KKPGKTQL---INHFLVNKSWYIVDLPG   94 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~-~---~~~------~------~~~~~t~~---~~~~~~~~~~~liDtpg   94 (219)
                      ++.....+|+|+|..|+|||||+++|+.... .   ..+      .      ...+.|..   ....+.+..+.+|||||
T Consensus         3 ~~~~~irni~iiG~~~~GKTtL~~~ll~~~g~~~~~~~v~~~~~~~d~~~~e~~r~~ti~~~~~~~~~~~~~i~liDtPG   82 (687)
T PRK13351          3 MPLMQIRNIGILAHIDAGKTTLTERILFYTGKIHKMGEVEDGTTVTDWMPQEQERGITIESAATSCDWDNHRINLIDTPG   82 (687)
T ss_pred             CccccccEEEEECCCCCcchhHHHHHHHhcCCccccccccCCcccCCCCHHHHhcCCCcccceEEEEECCEEEEEEECCC
Confidence            3445678999999999999999999985310 0   000      0      01122221   12223355899999999


Q ss_pred             CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      +..          |......+++.   +|++|+|+|++++........+..+...++|+++++||+|+..
T Consensus        83 ~~d----------f~~~~~~~l~~---aD~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~iiviNK~D~~~  139 (687)
T PRK13351         83 HID----------FTGEVERSLRV---LDGAVVVFDAVTGVQPQTETVWRQADRYGIPRLIFINKMDRVG  139 (687)
T ss_pred             cHH----------HHHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEECCCCCC
Confidence            631          23344556666   8999999999998777777777777778999999999999875

>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria

Probab=99.65  E-value=2.3e-15  Score=114.28  Aligned_cols=169  Identities=18%  Similarity=0.147  Sum_probs=102.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee---EEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN---HFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|.+|+||||++|.++|...........++|....   ....+..+.++||||+.....  ...+..+.+.+...
T Consensus         1 l~IlllG~tGsGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~g~~v~VIDTPGl~d~~~--~~~~~~~~i~~~l~   78 (212)
T PF04548_consen    1 LRILLLGKTGSGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVDGRQVTVIDTPGLFDSDG--SDEEIIREIKRCLS   78 (212)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEETTEEEEEEE--SSEETTE--EHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcccceeeccccCCcccccceeeeeecceEEEEEeCCCCCCCcc--cHHHHHHHHHHHHH
Confidence            4799999999999999999999854333322333333221   123345799999999854332  23334455555555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHH----HHHHHHHhcCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIK----SFQQLIRENYP  187 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~----~~~~~~~~~~~  187 (219)
                      ...+..|++++|+... ..+..+...++++..     .-..++||+|..|......   .++.++    ...+.+-..++
T Consensus        79 ~~~~g~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~~---~~~~l~~~~~~~l~~li~~c~  154 (212)
T PF04548_consen   79 LCSPGPHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDDS---LEDYLKKESNEALQELIEKCG  154 (212)
T ss_dssp             HTTT-ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTTT---HHHHHHHHHHHHHHHHHHHTT
T ss_pred             hccCCCeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhcccccccc---HHHHHhccCchhHhHHhhhcC
Confidence            5566789999999999 556666666665553     2357999999999766532   111222    22233333333


Q ss_pred             CCCCeEEeecC------CCCChHHHHHHHHHHHhh
Q 027757          188 HHPPWIMTSSV------TGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       188 ~~~~~~~~Sa~------~~~~v~el~~~l~~~~~~  216 (219)
                        -++..++.+      ....+.+|++.+.+.++.
T Consensus       155 --~R~~~f~n~~~~~~~~~~qv~~Ll~~ie~mv~~  187 (212)
T PF04548_consen  155 --GRYHVFNNKTKDKEKDESQVSELLEKIEEMVQE  187 (212)
T ss_dssp             --TCEEECCTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             --CEEEEEeccccchhhhHHHHHHHHHHHHHHHHH
Confidence              377777776      335688888888776654

The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....

>PRK12739 elongation factor G; Reviewed

Probab=99.64  E-value=1e-14  Score=128.27  Aligned_cols=116  Identities=15%  Similarity=0.185  Sum_probs=82.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc----cccccc------------CCCCeeEEe---eEEEecCeEEEEeCCCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKK----ELALTS------------KKPGKTQLI---NHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~----~~~~~~------------~~~~~t~~~---~~~~~~~~~~liDtpg~~   96 (219)
                      .....+|+|+|..++|||||+++|+...    ....+.            ...++|...   ...+.+.++.++||||+.
T Consensus         5 ~~~irni~iiGh~~~GKsTL~~~ll~~~g~~~~~~~v~~~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~i~liDTPG~~   84 (691)
T PRK12739          5 LEKTRNIGIMAHIDAGKTTTTERILYYTGKSHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKGHRINIIDTPGHV   84 (691)
T ss_pred             ccCeeEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCChhHhhcCCCccceeEEEEECCEEEEEEcCCCHH
Confidence            3457789999999999999999997531    011111            123333322   223345589999999963


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      .          |.......++.   +|++|+|+|+.++...++..++.++...++|.++++||+|+..
T Consensus        85 ~----------f~~e~~~al~~---~D~~ilVvDa~~g~~~qt~~i~~~~~~~~~p~iv~iNK~D~~~  139 (691)
T PRK12739         85 D----------FTIEVERSLRV---LDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG  139 (691)
T ss_pred             H----------HHHHHHHHHHH---hCeEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence            1          12223333444   8999999999998888888888888888999999999999874

>cd04169 RF3 RF3 subfamily

Probab=99.64  E-value=1.7e-14  Score=112.93  Aligned_cols=114  Identities=18%  Similarity=0.203  Sum_probs=74.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-cc---ccc----------C------CCCeeEE---eeEEEecCeEEEEeCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE-LA---LTS----------K------KPGKTQL---INHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~-~~---~~~----------~------~~~~t~~---~~~~~~~~~~~liDtpg~   95 (219)
                      ...|+|+|.+|+|||||+++|+...- ..   ...          .      ..+.+..   ....+.+.++.+|||||+
T Consensus         2 ~Rni~ivGh~~~GKTTL~e~ll~~~g~i~~~g~v~~~~~~~~t~~D~~~~e~~rg~si~~~~~~~~~~~~~i~liDTPG~   81 (267)
T cd04169           2 RRTFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGH   81 (267)
T ss_pred             ccEEEEEcCCCCCHHHHHHHHHHhcCCcccCceecccccCCCccCCCcHHHHhCCCCeEEEEEEEeeCCEEEEEEECCCc
Confidence            35799999999999999999985310 00   000          0      0011111   122223458999999996


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      ..          |.......++.   +|++|+|+|++++........++.....++|+++++||+|+...
T Consensus        82 ~d----------f~~~~~~~l~~---aD~~IlVvda~~g~~~~~~~i~~~~~~~~~P~iivvNK~D~~~a  138 (267)
T cd04169          82 ED----------FSEDTYRTLTA---VDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR  138 (267)
T ss_pred             hH----------HHHHHHHHHHH---CCEEEEEEECCCCccHHHHHHHHHHHhcCCCEEEEEECCccCCC
Confidence            31          22223334444   89999999999876655555666666678999999999998653

Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.

>COG1163 DRG Predicted GTPase [General function prediction only]

Probab=99.64  E-value=7.6e-15  Score=113.96  Aligned_cols=156  Identities=22%  Similarity=0.248  Sum_probs=108.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      +.+.-+|+++|.|++|||||++.|++..  ......+.||........   +.++.++|+||+........|+      .
T Consensus        60 KsGda~v~lVGfPsvGKStLL~~LTnt~--seva~y~FTTl~~VPG~l~Y~ga~IQild~Pgii~gas~g~gr------G  131 (365)
T COG1163          60 KSGDATVALVGFPSVGKSTLLNKLTNTK--SEVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGASSGRGR------G  131 (365)
T ss_pred             ccCCeEEEEEcCCCccHHHHHHHHhCCC--ccccccCceecccccceEeecCceEEEEcCcccccCcccCCCC------c
Confidence            4667899999999999999999999973  666677777765433322   3379999999975443332221      1


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---------------------------------------------
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG---------------------------------------------  147 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---------------------------------------------  147 (219)
                      ...+.-.+.||++++|+|+.......+ .+.+.+.                                             
T Consensus       132 ~~vlsv~R~ADlIiiVld~~~~~~~~~-~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~E  210 (365)
T COG1163         132 RQVLSVARNADLIIIVLDVFEDPHHRD-IIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILRE  210 (365)
T ss_pred             ceeeeeeccCCEEEEEEecCCChhHHH-HHHHHHHhcCeEecCCCCceEEEEeccCCEEEecccccccCCHHHHHHHHHH
Confidence            223334555999999999997654321 1112222                                             


Q ss_pred             --------------------------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 027757          148 --------------------------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL  201 (219)
Q Consensus       148 --------------------------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  201 (219)
                                                ..-+|.+.|+||+|+...       ++++.+.+.        ..++++||+.+.
T Consensus       211 y~I~nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~-------e~~~~l~~~--------~~~v~isa~~~~  275 (365)
T COG1163         211 YRIHNADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGL-------EELERLARK--------PNSVPISAKKGI  275 (365)
T ss_pred             hCcccceEEEecCCcHHHHHHHHhhcceeeeeEEEEecccccCH-------HHHHHHHhc--------cceEEEecccCC
Confidence                                      023799999999998763       344444443        378999999999


Q ss_pred             ChHHHHHHHHHHHh
Q 027757          202 GRDELLLHMSQLRN  215 (219)
Q Consensus       202 ~v~el~~~l~~~~~  215 (219)
                      |+++|.+.|-+.+.
T Consensus       276 nld~L~e~i~~~L~  289 (365)
T COG1163         276 NLDELKERIWDVLG  289 (365)
T ss_pred             CHHHHHHHHHHhhC
Confidence            99999998876553

>KOG0462 consensus Elongation factor-type GTP-binding protein [Translation, ribosomal structure and biogenesis]

Probab=99.63  E-value=8.7e-15  Score=120.37  Aligned_cols=159  Identities=21%  Similarity=0.209  Sum_probs=114.4

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCc-------------ccccccCCCCeeEEe---eEEEec---CeEEEEeCCC
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKK-------------ELALTSKKPGKTQLI---NHFLVN---KSWYIVDLPG   94 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~-------------~~~~~~~~~~~t~~~---~~~~~~---~~~~liDtpg   94 (219)
                      .|.++..++.|+.....|||||..+|+...             +.....+..|.|...   ..++.+   +.+.+|||||
T Consensus        55 ~P~~~iRNfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPG  134 (650)
T KOG0462|consen   55 DPVENIRNFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPG  134 (650)
T ss_pred             CchhhccceEEEEEecCCcchHHHHHHHHhCCCCCCCchhhhhhhhhhhhhcCcEEEeeeeEEEEEcCCceEEEeecCCC
Confidence            444677889999999999999999998642             001222445555432   233344   5789999999


Q ss_pred             CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHh
Q 027757           95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDEN  174 (219)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  174 (219)
                      +.++.....             +....+|++|+|+|++++...+...-+...-+.+..+|.|+||+|+...        +
T Consensus       135 HvDFs~EVs-------------Rslaac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~a--------d  193 (650)
T KOG0462|consen  135 HVDFSGEVS-------------RSLAACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSA--------D  193 (650)
T ss_pred             cccccceeh-------------ehhhhcCceEEEEEcCcCchHHHHHHHHHHHHcCCeEEEeeeccCCCCC--------C
Confidence            765432221             1122289999999999999988877677777789999999999999764        3


Q ss_pred             HHHHHHHHHhcCC-CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          175 IKSFQQLIRENYP-HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       175 ~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .++...++...+. ...+++.+||++|.|+.+++++|.+.
T Consensus       194 pe~V~~q~~~lF~~~~~~~i~vSAK~G~~v~~lL~AII~r  233 (650)
T KOG0462|consen  194 PERVENQLFELFDIPPAEVIYVSAKTGLNVEELLEAIIRR  233 (650)
T ss_pred             HHHHHHHHHHHhcCCccceEEEEeccCccHHHHHHHHHhh
Confidence            4444444444343 34589999999999999999999874

>TIGR00503 prfC peptide chain release factor 3

Probab=99.62  E-value=2.7e-14  Score=121.33  Aligned_cols=114  Identities=18%  Similarity=0.214  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-cccc---cc----------------CCCCeeEEe---eEEEecCeEEEEeCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-ELAL---TS----------------KKPGKTQLI---NHFLVNKSWYIVDLP   93 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~~---~~----------------~~~~~t~~~---~~~~~~~~~~liDtp   93 (219)
                      ..+.+|+|+|.+++|||||+++|+... ....   +.                ...+.+...   ...+.+..+.++|||
T Consensus         9 ~~~RniaiiGh~~aGKTTL~e~Ll~~~g~i~~~g~v~~~g~~~~t~~D~~~~E~~rgisi~~~~~~~~~~~~~inliDTP   88 (527)
T TIGR00503         9 DKRRTFAIISHPDAGKTTITEKVLLYGGAIQTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVMQFPYRDCLVNLLDTP   88 (527)
T ss_pred             ccCCEEEEEcCCCCCHHHHHHHHHHhCCCccccceeccccccccccCCCCHHHHhcCCcEEEEEEEEeeCCeEEEEEECC
Confidence            346799999999999999999986421 1110   00                011222211   122234578999999


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      |+..          |......+++.   +|++|+|+|+.++.......+++.....++|+++++||+|+.
T Consensus        89 G~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~~t~~l~~~~~~~~~PiivviNKiD~~  145 (527)
T TIGR00503        89 GHED----------FSEDTYRTLTA---VDNCLMVIDAAKGVETRTRKLMEVTRLRDTPIFTFMNKLDRD  145 (527)
T ss_pred             Chhh----------HHHHHHHHHHh---CCEEEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECcccc
Confidence            9631          12222333444   899999999998765555566666666789999999999985

This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.

>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts)

Probab=99.62  E-value=3.7e-14  Score=109.75  Aligned_cols=129  Identities=22%  Similarity=0.146  Sum_probs=81.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcc-hhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDV-TRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~-~~~~~~~~~  112 (219)
                      ...++|+++|.+|+|||||+|+|++.. ........++|.....+.   .+..+.++||||+.....+.. .+.... ..
T Consensus        29 ~~~~~IllvG~tGvGKSSliNaLlg~~-~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~-~I  106 (249)
T cd01853          29 DFSLTILVLGKTGVGKSSTINSIFGER-KAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILS-SI  106 (249)
T ss_pred             cCCeEEEEECCCCCcHHHHHHHHhCCC-CcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHH-HH
Confidence            557899999999999999999999974 444444544554433222   234799999999875432111 111112 22


Q ss_pred             HHHhhccCCccEEEEEEeCCC-CCCcccHHHHHHhcc-C----CCcEEEEEEcccccccccC
Q 027757          113 KGYFLNRESLVGVLLLIDASV-PPQKIDLDCANWLGR-N----NIPLTFVFTKCDKMKVAKG  168 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~-~----~~p~iiv~nK~D~~~~~~~  168 (219)
                      ..++. ....|+++||..++. .....+..+++.+.. .    -.++++|+||+|..++++.
T Consensus       107 ~~~l~-~~~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p~~~  167 (249)
T cd01853         107 KRYLK-KKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL  167 (249)
T ss_pred             HHHHh-ccCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCCCCC
Confidence            33333 234688888876664 234444455665553 1    2579999999998876554

This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.

>cd01882 BMS1 Bms1

Probab=99.62  E-value=1.6e-14  Score=110.63  Aligned_cols=145  Identities=21%  Similarity=0.170  Sum_probs=92.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .....|+++|.+|+|||||++.+.+...........++. .. ....+.++.++||||..            ..+.+   
T Consensus        37 ~~~~~i~ivG~~~~GKstl~~~l~~~~~~~~~~~~~g~i-~i-~~~~~~~i~~vDtPg~~------------~~~l~---   99 (225)
T cd01882          37 PPPLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPI-TV-VTGKKRRLTFIECPNDI------------NAMID---   99 (225)
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHhhcccCccccccccE-EE-EecCCceEEEEeCCchH------------HHHHH---
Confidence            445679999999999999999999863222222233321 11 11235578999999831            11211   


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                       ..+.+|.+++|+|++.+....+..++.++...+.|.+ +|+||+|+.....  ......+++...+........+++++
T Consensus       100 -~ak~aDvVllviDa~~~~~~~~~~i~~~l~~~g~p~vi~VvnK~D~~~~~~--~~~~~~~~l~~~~~~~~~~~~ki~~i  176 (225)
T cd01882         100 -IAKVADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNK--TLRKTKKRLKHRFWTEVYQGAKLFYL  176 (225)
T ss_pred             -HHHhcCEEEEEEecCcCCCHHHHHHHHHHHHcCCCeEEEEEeccccCCcHH--HHHHHHHHHHHHHHHhhCCCCcEEEE
Confidence             1234899999999998777777777788877778854 5999999874311  01111223333233223334799999


Q ss_pred             ecCCCC
Q 027757          196 SSVTGL  201 (219)
Q Consensus       196 Sa~~~~  201 (219)
                      ||++..
T Consensus       177 Sa~~~~  182 (225)
T cd01882         177 SGIVHG  182 (225)
T ss_pred             eeccCC
Confidence            999864

Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.

>PLN00043 elongation factor 1-alpha; Provisional

Probab=99.61  E-value=2.8e-14  Score=119.24  Aligned_cols=152  Identities=16%  Similarity=0.173  Sum_probs=93.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-cc----------------------------cccCCCCeeEEeeEEEe---cC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE-LA----------------------------LTSKKPGKTQLINHFLV---NK   85 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~-~~----------------------------~~~~~~~~t~~~~~~~~---~~   85 (219)
                      ....|+++|..++|||||+.+|+...- ..                            ......+.|.+......   +.
T Consensus         6 ~~~ni~i~Ghvd~GKSTL~g~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~~D~~~~Er~rGiTi~~~~~~~~~~~~   85 (447)
T PLN00043          6 VHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKY   85 (447)
T ss_pred             ceEEEEEEecCCCCHHHHHHHHHHHhCCCcHHHHHHHhhhhhhhcccchhhhhhhcCCHhHHhcCceEEEEEEEecCCCE
Confidence            357899999999999999999985210 00                            00112234443332222   33


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------cccHHHHHHhccCCCc-EEEEE
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KIDLDCANWLGRNNIP-LTFVF  157 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~iiv~  157 (219)
                      .+.++||||+.             .+..........+|++|+|+|+.++..       .+..+.+..+...++| +++++
T Consensus        86 ~i~liDtPGh~-------------df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~~~qT~eh~~~~~~~gi~~iIV~v  152 (447)
T PLN00043         86 YCTVIDAPGHR-------------DFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCC  152 (447)
T ss_pred             EEEEEECCCHH-------------HHHHHHHhhhhhccEEEEEEEcccCceecccCCCchHHHHHHHHHHcCCCcEEEEE
Confidence            78999999952             333333344445999999999997521       2334555566667785 68899


Q ss_pred             EcccccccccCCCchHhHHHHHHHHHh----cC--CCCCCeEEeecCCCCChHH
Q 027757          158 TKCDKMKVAKGRRPDENIKSFQQLIRE----NY--PHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       158 nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~~~~Sa~~~~~v~e  205 (219)
                      ||+|+.+..   .....+++..+.+..    ..  ...++++++||.+|.|+.+
T Consensus       153 NKmD~~~~~---~~~~~~~~i~~ei~~~l~~~g~~~~~~~~ipiSa~~G~ni~~  203 (447)
T PLN00043        153 NKMDATTPK---YSKARYDEIVKEVSSYLKKVGYNPDKIPFVPISGFEGDNMIE  203 (447)
T ss_pred             EcccCCchh---hhHHHHHHHHHHHHHHHHHcCCCcccceEEEEeccccccccc
Confidence            999976211   112233333333322    11  1247899999999999853

>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1

Probab=99.60  E-value=1.7e-14  Score=109.89  Aligned_cols=163  Identities=17%  Similarity=0.146  Sum_probs=90.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ||++||+.|+||||+.+.++++ ..+..+...+.|..+.....    +-.+.+||+||-....     +..+....+..+
T Consensus         1 KiLLmG~~~SGKTSi~~vIF~~-~~p~dT~~L~~T~~ve~~~v~~~~~~~l~iwD~pGq~~~~-----~~~~~~~~~~if   74 (232)
T PF04670_consen    1 KILLMGPRRSGKTSIRSVIFHK-YSPRDTLRLEPTIDVEKSHVRFLSFLPLNIWDCPGQDDFM-----ENYFNSQREEIF   74 (232)
T ss_dssp             EEEEEESTTSSHHHHHHHHHS----GGGGGG-----SEEEEEEECTTSCEEEEEEE-SSCSTT-----HTTHTCCHHHHH
T ss_pred             CEEEEcCCCCChhhHHHHHHcC-CCchhccccCCcCCceEEEEecCCCcEEEEEEcCCccccc-----cccccccHHHHH
Confidence            7999999999999999999997 56666666666665544443    2389999999953221     111122334555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH----HHHHhc--cCCCcEEEEEEcccccccccCCCchHh-HHHHHHHHHhcCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD----CANWLG--RNNIPLTFVFTKCDKMKVAKGRRPDEN-IKSFQQLIRENYPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  189 (219)
                      +.   ++++|||+|+....-..+..    .++.+.  .++..+.++++|+|+...+.+...-.. .+++.+.+.......
T Consensus        75 ~~---v~~LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~  151 (232)
T PF04670_consen   75 SN---VGVLIYVFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIED  151 (232)
T ss_dssp             CT---ESEEEEEEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TS
T ss_pred             hc---cCEEEEEEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccc
Confidence            66   89999999999544333322    122222  278899999999999865433222222 222333333333334


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +.++.+|.-..    .++++..+.+.+
T Consensus       152 ~~~~~TSI~D~----Sly~A~S~Ivq~  174 (232)
T PF04670_consen  152 ITFFLTSIWDE----SLYEAWSKIVQK  174 (232)
T ss_dssp             EEEEEE-TTST----HHHHHHHHHHHT
T ss_pred             eEEEeccCcCc----HHHHHHHHHHHH
Confidence            67888887763    355555555443

RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.

>PRK00007 elongation factor G; Reviewed

Probab=99.60  E-value=2e-14  Score=126.36  Aligned_cols=117  Identities=16%  Similarity=0.162  Sum_probs=83.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc--c--ccccc------------CCCCeeEEe---eEEEecCeEEEEeCCCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKK--E--LALTS------------KKPGKTQLI---NHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~--~--~~~~~------------~~~~~t~~~---~~~~~~~~~~liDtpg~~   96 (219)
                      .....+|+|+|.+++|||||+++|+...  .  ...+.            ...++|.+.   ...+.+..+.++||||+.
T Consensus         7 ~~~Irni~iiG~~~~GKsTL~~~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~rg~ti~~~~~~~~~~~~~~~liDTPG~~   86 (693)
T PRK00007          7 LERYRNIGIMAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTCFWKDHRINIIDTPGHV   86 (693)
T ss_pred             ccceeEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCcccCCCCHHHHhCCCCEeccEEEEEECCeEEEEEeCCCcH
Confidence            3457799999999999999999997421  0  00111            133344432   223345689999999963


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      .             +.....+....+|++|+|+|+..+...++..++.++...++|.++++||+|+...
T Consensus        87 ~-------------f~~ev~~al~~~D~~vlVvda~~g~~~qt~~~~~~~~~~~~p~iv~vNK~D~~~~  142 (693)
T PRK00007         87 D-------------FTIEVERSLRVLDGAVAVFDAVGGVEPQSETVWRQADKYKVPRIAFVNKMDRTGA  142 (693)
T ss_pred             H-------------HHHHHHHHHHHcCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            1             1112333334489999999999998888888899999999999999999998753

>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=99.59  E-value=4.1e-15  Score=108.63  Aligned_cols=125  Identities=23%  Similarity=0.359  Sum_probs=66.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH-
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG-  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~-  114 (219)
                      ...|+|+|++|+|||+|+.+|........+++. .  .......   .+..+.++|+||+..-.         ..+.+. 
T Consensus         3 ~~~vlL~Gps~SGKTaLf~~L~~~~~~~T~tS~-e--~n~~~~~~~~~~~~~~lvD~PGH~rlr---------~~~~~~~   70 (181)
T PF09439_consen    3 RPTVLLVGPSGSGKTALFSQLVNGKTVPTVTSM-E--NNIAYNVNNSKGKKLRLVDIPGHPRLR---------SKLLDEL   70 (181)
T ss_dssp             --EEEEE-STTSSHHHHHHHHHHSS---B---S-S--EEEECCGSSTCGTCECEEEETT-HCCC---------HHHHHHH
T ss_pred             CceEEEEcCCCCCHHHHHHHHhcCCcCCeeccc-c--CCceEEeecCCCCEEEEEECCCcHHHH---------HHHHHhh
Confidence            568999999999999999999997433333333 1  1111111   24479999999974221         112222 


Q ss_pred             -HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc---------cCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757          115 -YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG---------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       115 -~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                       +...   +.+||||+|++..... -.+..+++.         ...+|++|++||.|+............++.-+
T Consensus        71 ~~~~~---~k~IIfvvDSs~~~~~-~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~~~~~Ik~~LE~Ei  141 (181)
T PF09439_consen   71 KYLSN---AKGIIFVVDSSTDQKE-LRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAKPPKKIKKLLEKEI  141 (181)
T ss_dssp             HHHGG---EEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT---HHHHHHHHHHHH
T ss_pred             hchhh---CCEEEEEEeCccchhh-HHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccCCHHHHHHHHHHHH
Confidence             3444   8999999999742111 122233332         36799999999999976543333333333333

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.

>PRK13768 GTPase; Provisional

Probab=99.59  E-value=2.6e-14  Score=111.21  Aligned_cols=122  Identities=21%  Similarity=0.174  Sum_probs=74.6

Q ss_pred             eEEEEeCCCCCC-CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEc
Q 027757           86 SWYIVDLPGYGF-AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTK  159 (219)
Q Consensus        86 ~~~liDtpg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK  159 (219)
                      .+.++|+||... ..+..    .+..+.+...+ .. ++++++|+|+....+..+.....++.     ..++|+++|+||
T Consensus        98 ~~~~~d~~g~~~~~~~~~----~~~~~~~~l~~-~~-~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK  171 (253)
T PRK13768         98 DYVLVDTPGQMELFAFRE----SGRKLVERLSG-SS-KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNK  171 (253)
T ss_pred             CEEEEeCCcHHHHHhhhH----HHHHHHHHHHh-cC-CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEh
Confidence            689999999532 11111    11222222221 11 68999999998766665554444443     468999999999


Q ss_pred             ccccccccCCCchHhHHH---------------------HHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          160 CDKMKVAKGRRPDENIKS---------------------FQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       160 ~D~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +|+....+.+.....++.                     +.+.+.. .+...+++++|++++.|+++++++|.+.+
T Consensus       172 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~i~~-~~~~~~vi~iSa~~~~gl~~L~~~I~~~l  246 (253)
T PRK13768        172 ADLLSEEELERILKWLEDPEYLLEELKLEKGLQGLLSLELLRALEE-TGLPVRVIPVSAKTGEGFDELYAAIQEVF  246 (253)
T ss_pred             HhhcCchhHHHHHHHHhCHHHHHHHHhcccchHHHHHHHHHHHHHH-HCCCCcEEEEECCCCcCHHHHHHHHHHHc
Confidence            999865332111111110                     0111111 22335889999999999999999998865

>TIGR00484 EF-G translation elongation factor EF-G

Probab=99.58  E-value=6.1e-14  Score=123.45  Aligned_cols=117  Identities=17%  Similarity=0.127  Sum_probs=82.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc-cc---ccccC------------CCCeeEEe---eEEEecCeEEEEeCCCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKK-EL---ALTSK------------KPGKTQLI---NHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-~~---~~~~~------------~~~~t~~~---~~~~~~~~~~liDtpg~~   96 (219)
                      .....+|+|+|.+++|||||+|+|+... ..   ....+            ..++|...   ...+.+.++.++||||+.
T Consensus         7 ~~~irni~iiG~~~~GKsTL~~~ll~~~g~~~~~~~~~~g~~~~D~~~~e~~rgiti~~~~~~~~~~~~~i~liDTPG~~   86 (689)
T TIGR00484         7 LNRFRNIGISAHIDAGKTTTTERILFYTGRIHKIGEVHDGAATMDWMEQEKERGITITSAATTVFWKGHRINIIDTPGHV   86 (689)
T ss_pred             cccccEEEEECCCCCCHHHHHHHHHHhCCCccccccccCCccccCCCHHHHhcCCCEecceEEEEECCeEEEEEECCCCc
Confidence            3457799999999999999999997531 01   00111            22344332   222345589999999974


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      ..          ......+++.   +|++|+|+|+.++....+...+.++...++|+++++||+|+...
T Consensus        87 ~~----------~~~~~~~l~~---~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~ivviNK~D~~~~  142 (689)
T TIGR00484        87 DF----------TVEVERSLRV---LDGAVAVLDAVGGVQPQSETVWRQANRYEVPRIAFVNKMDKTGA  142 (689)
T ss_pred             ch----------hHHHHHHHHH---hCEEEEEEeCCCCCChhHHHHHHHHHHcCCCEEEEEECCCCCCC
Confidence            31          1223444555   89999999999987777777888888889999999999998753

After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.

>KOG0090 consensus Signal recognition particle receptor, beta subunit (small G protein superfamily) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=3.3e-14  Score=104.12  Aligned_cols=163  Identities=18%  Similarity=0.242  Sum_probs=103.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .....|+++|++++|||+|.-.|........+++...  ........+....++|.||+..          .+.-...++
T Consensus        36 s~~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSiep--n~a~~r~gs~~~~LVD~PGH~r----------lR~kl~e~~  103 (238)
T KOG0090|consen   36 SKQNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIEP--NEATYRLGSENVTLVDLPGHSR----------LRRKLLEYL  103 (238)
T ss_pred             ccCCcEEEEecCCCCceeeeeehhcCCccCeeeeecc--ceeeEeecCcceEEEeCCCcHH----------HHHHHHHHc
Confidence            3457899999999999999988887643332222111  1122223344579999999741          122334455


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc---------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh---
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG---------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE---  184 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~---------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---  184 (219)
                      ...+.+-++|||+|+........ +..+++.         ...+|+++++||.|+......++..+.++.-++.+..   
T Consensus       104 ~~~~~akaiVFVVDSa~f~k~vr-dvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~~Ir~~LEkEi~~lr~sRs  182 (238)
T KOG0090|consen  104 KHNYSAKAIVFVVDSATFLKNVR-DVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAEKIRQQLEKEIHKLRESRS  182 (238)
T ss_pred             cccccceeEEEEEeccccchhhH-HHHHHHHHHHHhhccccCCCCEEEEecchhhhhcCcHHHHHHHHHHHHHHHHHHHh
Confidence            54456899999999986443322 2222222         3678999999999998776655555555544443322   


Q ss_pred             --------------------------cCC-CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          185 --------------------------NYP-HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       185 --------------------------~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                                                ++. ..+.+.+.|++++ +++++.+|+.+.
T Consensus       183 a~~~~~~ed~~~~~tlg~~g~dF~fs~l~~~~V~F~e~S~~~~-~i~~~~~wi~~~  237 (238)
T KOG0090|consen  183 ALRSISDEDIAKDFTLGKEGEDFKFSHLEDQKVTFAEASAKTG-EIDQWESWIREA  237 (238)
T ss_pred             hhhccccccccccccccccccccchhhcccceeEEeecccCcC-ChHHHHHHHHHh
Confidence                                      111 1245778888887 899999999875

>cd01899 Ygr210 Ygr210 subfamily

Probab=99.57  E-value=6.5e-14  Score=111.89  Aligned_cols=84  Identities=18%  Similarity=0.175  Sum_probs=57.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-------------------------ecCeEEEEeCCC
Q 027757           42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-------------------------VNKSWYIVDLPG   94 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-------------------------~~~~~~liDtpg   94 (219)
                      |+++|.+++|||||+|+|++..  ....+.+++|..+..  ..                         ...++.++||||
T Consensus         1 i~ivG~pnvGKStLfn~lt~~~--~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aG   78 (318)
T cd01899           1 IGLVGKPNAGKSTFFNAATLAD--VEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAG   78 (318)
T ss_pred             CEEECCCCCCHHHHHHHHhCCC--CcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCC
Confidence            5899999999999999999974  355666666644321  11                         012589999999


Q ss_pred             CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      +....      ..+..+...++...+.+|++++|+|+..
T Consensus        79 lv~ga------~~~~glg~~fL~~ir~aD~ii~Vvd~~~  111 (318)
T cd01899          79 LVPGA------HEGKGLGNKFLDDLRDADALIHVVDASG  111 (318)
T ss_pred             CCCCc------cchhhHHHHHHHHHHHCCEEEEEEeCCC
Confidence            74321      1224455566555555999999999974

Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.

>KOG3883 consensus Ras family small GTPase [Signal transduction mechanisms]

Probab=99.57  E-value=1.5e-13  Score=95.30  Aligned_cols=157  Identities=11%  Similarity=0.115  Sum_probs=109.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe------cCeEEEEeCCCCCCCCCCcchhhhHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV------NKSWYIVDLPGYGFAKAPDVTRMDWSS  110 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpg~~~~~~~~~~~~~~~~  110 (219)
                      +...||+++|..++|||++++.|+... .........+..++.....      ...+.+-||.|+...      +   ..
T Consensus         7 Gk~~kVvVcG~k~VGKTaileQl~yg~-~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~------~---~e   76 (198)
T KOG3883|consen    7 GKVCKVVVCGMKSVGKTAILEQLLYGN-HVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG------Q---QE   76 (198)
T ss_pred             CcceEEEEECCccccHHHHHHHHHhcc-CCCCCccccchhhheeEeeecCCChhheEEEeecccccCc------h---hh
Confidence            346799999999999999999998763 2222222222222221111      125889999997432      2   23


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCcccHHHHH-Hhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          111 FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN-WLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      +-+.|+..   +|++++|+++.++.++...++++ ++.+    ..+|++++.||+|+.++  +++.......|.+.-.  
T Consensus        77 Lprhy~q~---aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p--~~vd~d~A~~Wa~rEk--  149 (198)
T KOG3883|consen   77 LPRHYFQF---ADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEP--REVDMDVAQIWAKREK--  149 (198)
T ss_pred             hhHhHhcc---CceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhcccc--hhcCHHHHHHHHhhhh--
Confidence            55777777   89999999999999887766554 5553    56899999999999754  4444444445544432  


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                          +..+++++.....+-|.|.+++...
T Consensus       150 ----vkl~eVta~dR~sL~epf~~l~~rl  174 (198)
T KOG3883|consen  150 ----VKLWEVTAMDRPSLYEPFTYLASRL  174 (198)
T ss_pred             ----eeEEEEEeccchhhhhHHHHHHHhc
Confidence                6789999999999999998887644

>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.56  E-value=2.1e-13  Score=109.34  Aligned_cols=151  Identities=18%  Similarity=0.218  Sum_probs=101.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------------ccccccCCCCeeEEeeEEEe---c
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-----------------------------ELALTSKKPGKTQLINHFLV---N   84 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----------------------------~~~~~~~~~~~t~~~~~~~~---~   84 (219)
                      ..+.+++++|...+|||||+.+|+...                             +.....+..|.|.+......   .
T Consensus         5 Kph~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k   84 (428)
T COG5256           5 KPHLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDK   84 (428)
T ss_pred             CCceEEEEEcCCCCCchhhhhhhHHHhCCCCHHHHHHHHHHHHhcCCCceEEEEEecCChhHHhcceEEEEEEEEeecCC
Confidence            446899999999999999999998541                             00112233355554443332   3


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCC-CcEEEE
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNN-IPLTFV  156 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~-~p~iiv  156 (219)
                      ..+.++|+||+             +.+.+....++.+||+.|+|+|+..+.       ..+..+......-.+ ..++++
T Consensus        85 ~~~tIiDaPGH-------------rdFvknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVa  151 (428)
T COG5256          85 YNFTIIDAPGH-------------RDFVKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVA  151 (428)
T ss_pred             ceEEEeeCCch-------------HHHHHHhhcchhhccEEEEEEECCCCccccccccCCchhHHHHHHHhcCCceEEEE
Confidence            46999999995             456677777888899999999999873       333344333333333 458999


Q ss_pred             EEcccccccccCCCchHhHHHHHHHHHh---cC--CC-CCCeEEeecCCCCChHH
Q 027757          157 FTKCDKMKVAKGRRPDENIKSFQQLIRE---NY--PH-HPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       157 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~--~~-~~~~~~~Sa~~~~~v~e  205 (219)
                      +||+|..+-     .++.+++....+..   ..  .. .++++++|+..|+|+.+
T Consensus       152 vNKMD~v~w-----de~rf~ei~~~v~~l~k~~G~~~~~v~FIPiSg~~G~Nl~~  201 (428)
T COG5256         152 VNKMDLVSW-----DEERFEEIVSEVSKLLKMVGYNPKDVPFIPISGFKGDNLTK  201 (428)
T ss_pred             EEccccccc-----CHHHHHHHHHHHHHHHHHcCCCccCCeEEecccccCCcccc
Confidence            999998763     23455555444333   22  22 47899999999999765

>PRK14845 translation initiation factor IF-2; Provisional

Probab=99.56  E-value=9.1e-14  Score=124.80  Aligned_cols=151  Identities=18%  Similarity=0.222  Sum_probs=99.7

Q ss_pred             CCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---------------------eEEEEeCCCCCCCCCCcchhhhH
Q 027757           50 VGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---------------------SWYIVDLPGYGFAKAPDVTRMDW  108 (219)
Q Consensus        50 ~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---------------------~~~liDtpg~~~~~~~~~~~~~~  108 (219)
                      ++||||+.++.+...  ...-.-|.|.+++.+.+..                     .+.++||||+.          .|
T Consensus       472 ~~KTtLLD~iR~t~v--~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe----------~F  539 (1049)
T PRK14845        472 VHNTTLLDKIRKTRV--AKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHE----------AF  539 (1049)
T ss_pred             cccccHHHHHhCCCc--ccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcH----------HH
Confidence            349999999999742  3344556777665543321                     27999999942          22


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCC-----------chHhHHH
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRR-----------PDENIKS  177 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~-----------~~~~~~~  177 (219)
                      ..+....   ...+|++++|+|++++...+..+.+..+...++|+++|+||+|+.+......           .+....+
T Consensus       540 ~~lr~~g---~~~aDivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~e  616 (1049)
T PRK14845        540 TSLRKRG---GSLADLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTE  616 (1049)
T ss_pred             HHHHHhh---cccCCEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHH
Confidence            3333333   3348999999999987777777777888888899999999999864311100           0001111


Q ss_pred             H-------HHHHHh------------cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          178 F-------QQLIRE------------NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       178 ~-------~~~~~~------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +       ..++..            .+...++++++||++|.|+++|+.+|..+.+
T Consensus       617 l~~~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~  673 (1049)
T PRK14845        617 LEIKLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ  673 (1049)
T ss_pred             HHHHHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence            1       111111            1344679999999999999999999876544

>PRK09602 translation-associated GTPase; Reviewed

Probab=99.55  E-value=2.3e-13  Score=111.88  Aligned_cols=85  Identities=19%  Similarity=0.178  Sum_probs=59.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--E-------------------------ecCeEEEEeC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--L-------------------------VNKSWYIVDL   92 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~-------------------------~~~~~~liDt   92 (219)
                      ++|+|+|.+|+|||||+|+|++..  ....+.+++|..+...  .                         ....+.++|+
T Consensus         2 ~kigivG~pnvGKSTlfn~Lt~~~--~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~   79 (396)
T PRK09602          2 ITIGLVGKPNVGKSTFFNAATLAD--VEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDV   79 (396)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCc--ccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEc
Confidence            589999999999999999999974  3445666666543321  1                         1124789999


Q ss_pred             CCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757           93 PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS  132 (219)
Q Consensus        93 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  132 (219)
                      ||+....      ...+.+...++...+.+|++++|+|+.
T Consensus        80 aGl~~ga------~~g~glg~~fL~~ir~ad~ll~Vvd~~  113 (396)
T PRK09602         80 AGLVPGA------HEGRGLGNQFLDDLRQADALIHVVDAS  113 (396)
T ss_pred             CCcCCCc------cchhhHHHHHHHHHHHCCEEEEEEeCC
Confidence            9975322      112345556656666699999999997

>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]

Probab=99.54  E-value=6.7e-14  Score=113.58  Aligned_cols=157  Identities=20%  Similarity=0.218  Sum_probs=112.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc-------------ccccccCCCCeeEEeeEEEe-----c---CeEEEEeCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKK-------------ELALTSKKPGKTQLINHFLV-----N---KSWYIVDLPG   94 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-------------~~~~~~~~~~~t~~~~~~~~-----~---~~~~liDtpg   94 (219)
                      ..+..+..|+..-..|||||..+++...             +.+...+..|.|........     +   +.+.++||||
T Consensus         6 ~~~IRNFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPG   85 (603)
T COG0481           6 QKNIRNFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPG   85 (603)
T ss_pred             hhhccceEEEEEecCCcchHHHHHHHHhcCcChHHHHHHhhhhhhhHhhcCceEEeeEEEEEEEeCCCCEEEEEEcCCCC
Confidence            3456678999999999999999998652             12233445566654333221     1   3588999999


Q ss_pred             CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHh
Q 027757           95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDEN  174 (219)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~  174 (219)
                      +.++.+...     ++        ...|.+.++|+|++++...+.+.-....-+.+.-++.|+||+|+...        +
T Consensus        86 HVDFsYEVS-----RS--------LAACEGalLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~A--------d  144 (603)
T COG0481          86 HVDFSYEVS-----RS--------LAACEGALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAA--------D  144 (603)
T ss_pred             ccceEEEeh-----hh--------HhhCCCcEEEEECccchHHHHHHHHHHHHHcCcEEEEeeecccCCCC--------C
Confidence            876554432     12        22278999999999998888776666666789999999999999865        3


Q ss_pred             HHHHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHH
Q 027757          175 IKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       175 ~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .++..+++....+. ....+.+|||+|.|++++++.|.+.
T Consensus       145 pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~Iv~~  184 (603)
T COG0481         145 PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEAIVEK  184 (603)
T ss_pred             HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHHHHhh
Confidence            44445555444442 3467999999999999999998764

>PRK09435 membrane ATPase/protein kinase; Provisional

Probab=99.54  E-value=3.3e-14  Score=113.69  Aligned_cols=110  Identities=17%  Similarity=0.176  Sum_probs=66.7

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..++++||+|+......         .       ...+|.+++|.++..+...+.   .+ ........++|+||+|+.+
T Consensus       149 ~d~viieT~Gv~qs~~~---------i-------~~~aD~vlvv~~p~~gd~iq~---~k-~gi~E~aDIiVVNKaDl~~  208 (332)
T PRK09435        149 YDVILVETVGVGQSETA---------V-------AGMVDFFLLLQLPGAGDELQG---IK-KGIMELADLIVINKADGDN  208 (332)
T ss_pred             CCEEEEECCCCccchhH---------H-------HHhCCEEEEEecCCchHHHHH---HH-hhhhhhhheEEeehhcccc
Confidence            47899999998632111         1       112899999976443332211   11 0112334499999999876


Q ss_pred             cccCCCchHhHHHHHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          165 VAKGRRPDENIKSFQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ....   .....++...+....    .+.+|++.+||+++.|+++|++++.++...+
T Consensus       209 ~~~a---~~~~~el~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~~l  262 (332)
T PRK09435        209 KTAA---RRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRAAL  262 (332)
T ss_pred             hhHH---HHHHHHHHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            4311   122223333332211    1336899999999999999999999987654

>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase)

Probab=99.53  E-value=2.3e-13  Score=107.02  Aligned_cols=125  Identities=15%  Similarity=0.124  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+||||++|+|++. ....++...+++...   .....+.++.++||||+....   ...+......+
T Consensus        36 ~~~~rIllvGktGVGKSSliNsIlG~-~v~~vs~f~s~t~~~~~~~~~~~G~~l~VIDTPGL~d~~---~~~e~~~~~ik  111 (313)
T TIGR00991        36 VSSLTILVMGKGGVGKSSTVNSIIGE-RIATVSAFQSEGLRPMMVSRTRAGFTLNIIDTPGLIEGG---YINDQAVNIIK  111 (313)
T ss_pred             ccceEEEEECCCCCCHHHHHHHHhCC-CcccccCCCCcceeEEEEEEEECCeEEEEEECCCCCchH---HHHHHHHHHHH
Confidence            45789999999999999999999997 344444444333222   122234589999999986431   11122233444


Q ss_pred             HHhhccCCccEEEEEEeCCC-CCCcccHHHHHHhcc-----CCCcEEEEEEcccccccc
Q 027757          114 GYFLNRESLVGVLLLIDASV-PPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~  166 (219)
                      .++.. ...|+++||...+. ..+..+...++.+..     .-.++++|+|++|..+++
T Consensus       112 ~~l~~-~g~DvVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~~pd  169 (313)
T TIGR00991       112 RFLLG-KTIDVLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFSPPD  169 (313)
T ss_pred             HHhhc-CCCCEEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccCCCC
Confidence            44433 35799999965543 233344444444443     236799999999987543

>KOG0461 consensus Selenocysteine-specific elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.52  E-value=7.7e-13  Score=103.68  Aligned_cols=162  Identities=21%  Similarity=0.221  Sum_probs=108.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccc-----cCCCCeeEEeeEEE--e----------cCeEEEEeCCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALT-----SKKPGKTQLINHFL--V----------NKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~-----~~~~~~t~~~~~~~--~----------~~~~~liDtpg~~~~~~~  101 (219)
                      .+++.++|...+|||||..+|.....-+..     +...+.|.+.....  .          ..++.++|+||+      
T Consensus         7 n~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH------   80 (522)
T KOG0461|consen    7 NLNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH------   80 (522)
T ss_pred             eeeeeeEeeccCchHHHHHHHHhhccchhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCc------
Confidence            488999999999999999999865322222     22334444432211  1          125799999997      


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchH-hHHHHHH
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDE-NIKSFQQ  180 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~-~~~~~~~  180 (219)
                             .++.+..+.+++-.|..++|+|+..+...+..+.+-.-...-...++|+||+|..++..+....+ ....+.+
T Consensus        81 -------asLIRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~K  153 (522)
T KOG0461|consen   81 -------ASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRK  153 (522)
T ss_pred             -------HHHHHHHHhhhheeeeeeEEEehhcccccccchhhhhhhhhccceEEEEeccccccchhhhhHHHHHHHHHHH
Confidence                   45667777777778999999999987666654433322234456799999999988755432222 2223333


Q ss_pred             HHHh-cCCCCCCeEEeecCCC----CChHHHHHHHHHH
Q 027757          181 LIRE-NYPHHPPWIMTSSVTG----LGRDELLLHMSQL  213 (219)
Q Consensus       181 ~~~~-~~~~~~~~~~~Sa~~~----~~v~el~~~l~~~  213 (219)
                      .+.+ .+....|++++|+..|    .++.||.+.|...
T Consensus       154 tLe~t~f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~  191 (522)
T KOG0461|consen  154 TLESTGFDGNSPIVEVSAADGYFKEEMIQELKEALESR  191 (522)
T ss_pred             HHHhcCcCCCCceeEEecCCCccchhHHHHHHHHHHHh
Confidence            4443 3345689999999999    6777777776553

>KOG0071 consensus GTP-binding ADP-ribosylation factor Arf6 (dArf3) [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.52  E-value=5.9e-13  Score=91.11  Aligned_cols=157  Identities=14%  Similarity=0.159  Sum_probs=106.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+|+.+|-.++||||++..|.-.. ...+.++.|  ..+..++.. -.+..+|..|          +...+.++..||
T Consensus        16 KE~~ilmlGLd~aGKTtiLyKLkl~~-~~~~ipTvG--FnvetVtykN~kfNvwdvGG----------qd~iRplWrhYy   82 (180)
T KOG0071|consen   16 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVG--FNVETVTYKNVKFNVWDVGG----------QDKIRPLWRHYY   82 (180)
T ss_pred             ccceEEEEecccCCceehhhHHhcCC-Ccccccccc--eeEEEEEeeeeEEeeeeccC----------chhhhHHHHhhc
Confidence            37899999999999999999998863 333333333  333444433 3677777766          556688999999


Q ss_pred             hccCCccEEEEEEeCCCCCCccc--HHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKID--LDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .+   ..++|||+|+.+...-..  .++.+.+..   .+.|+++..||-|+.+....    .++..+.+. ...-+...-
T Consensus        83 ~g---tqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~p----qei~d~leL-e~~r~~~W~  154 (180)
T KOG0071|consen   83 TG---TQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKP----QEIQDKLEL-ERIRDRNWY  154 (180)
T ss_pred             cC---CceEEEEEeccchhhHHHHHHHHHHHhCCHhhhcceEEEEecCcccccccCH----HHHHHHhcc-ccccCCccE
Confidence            99   788999999987532211  122222222   57899999999999876322    233333221 111223355


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +.++|+.+|+|+.|-+.|+....+
T Consensus       155 vqp~~a~~gdgL~eglswlsnn~~  178 (180)
T KOG0071|consen  155 VQPSCALSGDGLKEGLSWLSNNLK  178 (180)
T ss_pred             eeccccccchhHHHHHHHHHhhcc
Confidence            789999999999999999987654

>KOG0072 consensus GTP-binding ADP-ribosylation factor-like protein ARL1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.51  E-value=7.7e-14  Score=95.80  Aligned_cols=158  Identities=17%  Similarity=0.158  Sum_probs=104.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ...+++++|--|+||||+.-++.-. ....+-|+++-...... ..+-++.+||..|-          ...+-.+++||.
T Consensus        17 ~e~rililgldGaGkttIlyrlqvg-evvttkPtigfnve~v~-yKNLk~~vwdLggq----------tSirPyWRcYy~   84 (182)
T KOG0072|consen   17 REMRILILGLDGAGKTTILYRLQVG-EVVTTKPTIGFNVETVP-YKNLKFQVWDLGGQ----------TSIRPYWRCYYA   84 (182)
T ss_pred             cceEEEEeeccCCCeeEEEEEcccC-cccccCCCCCcCccccc-cccccceeeEccCc----------ccccHHHHHHhc
Confidence            5679999999999999987666543 23333344432222111 14557888888773          233678999999


Q ss_pred             ccCCccEEEEEEeCCCCCC--cccHHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCCCC
Q 027757          118 NRESLVGVLLLIDASVPPQ--KIDLDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPHHP  190 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~--~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  190 (219)
                      +   .|++|||+|.++...  ....++...+.+   .+-.++++.||.|.....       -..+....++.  .-....
T Consensus        85 d---t~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~~-------t~~E~~~~L~l~~Lk~r~~  154 (182)
T KOG0072|consen   85 D---TDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGAL-------TRSEVLKMLGLQKLKDRIW  154 (182)
T ss_pred             c---cceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhhh-------hHHHHHHHhChHHHhhhee
Confidence            8   899999999997543  222344455554   346788999999976531       12222222211  112236


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      .+|..||..|.|+++..+|+.+-++..
T Consensus       155 ~Iv~tSA~kg~Gld~~~DWL~~~l~~~  181 (182)
T KOG0072|consen  155 QIVKTSAVKGEGLDPAMDWLQRPLKSR  181 (182)
T ss_pred             EEEeeccccccCCcHHHHHHHHHHhcc
Confidence            899999999999999999999987754

>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence

Probab=99.51  E-value=1.1e-13  Score=111.68  Aligned_cols=166  Identities=19%  Similarity=0.136  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccc---cCCCCeeEEeeEEEecC--eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALT---SKKPGKTQLINHFLVNK--SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~---~~~~~~t~~~~~~~~~~--~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      .+++|+|+|.+|+|||||||+|.|-..-...   .....+|.....+....  .+++||.||++-.....      +.+.
T Consensus        34 ~~l~IaV~G~sGsGKSSfINalrGl~~~d~~aA~tGv~etT~~~~~Y~~p~~pnv~lWDlPG~gt~~f~~------~~Yl  107 (376)
T PF05049_consen   34 APLNIAVTGESGSGKSSFINALRGLGHEDEGAAPTGVVETTMEPTPYPHPKFPNVTLWDLPGIGTPNFPP------EEYL  107 (376)
T ss_dssp             --EEEEEEESTTSSHHHHHHHHTT--TTSTTS--SSSHSCCTS-EEEE-SS-TTEEEEEE--GGGSS--H------HHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHhCCCCCCcCcCCCCCCcCCCCCeeCCCCCCCCCeEEeCCCCCCCCCCH------HHHH
Confidence            4679999999999999999999874221111   11223444455555443  79999999986432211      1111


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccccc-----CCCc-hHhHHH----HHHHH
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAK-----GRRP-DENIKS----FQQLI  182 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~-----~~~~-~~~~~~----~~~~~  182 (219)
                      +..  .....|.+|++.+  ...+..+..+.+.+.+.++|+++|-||+|..-..+     ..-. ++-+++    ..+.+
T Consensus       108 ~~~--~~~~yD~fiii~s--~rf~~ndv~La~~i~~~gK~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L  183 (376)
T PF05049_consen  108 KEV--KFYRYDFFIIISS--ERFTENDVQLAKEIQRMGKKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENL  183 (376)
T ss_dssp             HHT--TGGG-SEEEEEES--SS--HHHHHHHHHHHHTT-EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHH
T ss_pred             HHc--cccccCEEEEEeC--CCCchhhHHHHHHHHHcCCcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHH
Confidence            111  1222587666554  23456667778888889999999999999621111     0111 111222    23334


Q ss_pred             HhcCCCCCCeEEeecCC--CCChHHHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVT--GLGRDELLLHMSQL  213 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~--~~~v~el~~~l~~~  213 (219)
                      ....-..+++|.+|+.+  ..+++.|.+.|.+.
T Consensus       184 ~k~gv~~P~VFLVS~~dl~~yDFp~L~~tL~~d  216 (376)
T PF05049_consen  184 QKAGVSEPQVFLVSSFDLSKYDFPKLEETLEKD  216 (376)
T ss_dssp             HCTT-SS--EEEB-TTTTTSTTHHHHHHHHHHH
T ss_pred             HHcCCCcCceEEEeCCCcccCChHHHHHHHHHH
Confidence            44444567899999887  35688888777653

IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.

>smart00053 DYNc Dynamin, GTPase

Probab=99.50  E-value=8.1e-13  Score=101.32  Aligned_cols=78  Identities=22%  Similarity=0.196  Sum_probs=58.3

Q ss_pred             eEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-HHHHHHhccCCCcEEEEEEccc
Q 027757           86 SWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-LDCANWLGRNNIPLTFVFTKCD  161 (219)
Q Consensus        86 ~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~D  161 (219)
                      .++++||||+.....   .......++.+...|+...  .+.+++|+|+.......+ .++.+++.....|+++|+||+|
T Consensus       126 ~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~--~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D  203 (240)
T smart00053      126 NLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKE--ECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD  203 (240)
T ss_pred             ceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCc--cCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence            689999999853211   1223455667777777642  468999999987666656 5788888889999999999999


Q ss_pred             cccc
Q 027757          162 KMKV  165 (219)
Q Consensus       162 ~~~~  165 (219)
                      ....
T Consensus       204 ~~~~  207 (240)
T smart00053      204 LMDE  207 (240)
T ss_pred             CCCc
Confidence            8764

Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.

>KOG0074 consensus GTP-binding ADP-ribosylation factor-like protein ARL3 [General function prediction only]

Probab=99.48  E-value=9e-14  Score=95.20  Aligned_cols=155  Identities=14%  Similarity=0.155  Sum_probs=109.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+||+++|-.+||||||+..|.+. +.....++.|-......+....++.+||..|-.          -.+-++..||
T Consensus        15 ~rEirilllGldnAGKTT~LKqL~sE-D~~hltpT~GFn~k~v~~~g~f~LnvwDiGGqr----------~IRpyWsNYy   83 (185)
T KOG0074|consen   15 RREIRILLLGLDNAGKTTFLKQLKSE-DPRHLTPTNGFNTKKVEYDGTFHLNVWDIGGQR----------GIRPYWSNYY   83 (185)
T ss_pred             cceEEEEEEecCCCcchhHHHHHccC-ChhhccccCCcceEEEeecCcEEEEEEecCCcc----------ccchhhhhhh
Confidence            55789999999999999999999997 677777777755554555555678889988732          2245778888


Q ss_pred             hccCCccEEEEEEeCCCCCCccc--HHHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKID--LDCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  189 (219)
                      ..   .|++|||+|.++...+.+  .++.+.+.   -..+|++|..||-|++....       .++....+....  ...
T Consensus        84 en---vd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~-------~eeia~klnl~~lrdRs  153 (185)
T KOG0074|consen   84 EN---VDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAK-------VEEIALKLNLAGLRDRS  153 (185)
T ss_pred             hc---cceEEEEEeCCchHhHHHHHHHHHHHhhhhhhhccceeehhhhhHHHhhcc-------hHHHHHhcchhhhhhce
Confidence            88   899999999877544332  23333333   36799999999999886532       222222211111  113


Q ss_pred             CCeEEeecCCCCChHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      ..+-++||.++.|+.+-.+|++.
T Consensus       154 whIq~csals~eg~~dg~~wv~s  176 (185)
T KOG0074|consen  154 WHIQECSALSLEGSTDGSDWVQS  176 (185)
T ss_pred             EEeeeCccccccCccCcchhhhc
Confidence            56789999999999888888765

>PRK12740 elongation factor G; Reviewed

Probab=99.48  E-value=1.4e-12  Score=114.87  Aligned_cols=107  Identities=15%  Similarity=0.141  Sum_probs=72.3

Q ss_pred             EcCCCCCHHHHHHHHhcCccc--c--cc------c------CCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCCcchh
Q 027757           45 LGRSNVGKSSLINALVRKKEL--A--LT------S------KKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAPDVTR  105 (219)
Q Consensus        45 ~G~~g~GKSslin~l~~~~~~--~--~~------~------~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~~~~~  105 (219)
                      +|..++|||||+++|+...-.  .  ..      .      ...+.|...   ...+.+..+.++||||+..        
T Consensus         1 ig~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~d~~~~e~~rgiTi~~~~~~~~~~~~~i~liDtPG~~~--------   72 (668)
T PRK12740          1 VGHSGAGKTTLTEAILFYTGAIHRIGEVEDGTTTMDFMPEERERGISITSAATTCEWKGHKINLIDTPGHVD--------   72 (668)
T ss_pred             CCCCCCcHHHHHHHHHHhcCCCccCccccCCcccCCCChHHHhcCCCeeeceEEEEECCEEEEEEECCCcHH--------
Confidence            599999999999999654200  0  00      0      012222221   2223345899999999631        


Q ss_pred             hhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          106 MDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       106 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                        |......+++.   +|++++|+|++.+........+..+...++|+++|+||+|+..
T Consensus        73 --~~~~~~~~l~~---aD~vllvvd~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~  126 (668)
T PRK12740         73 --FTGEVERALRV---LDGAVVVVCAVGGVEPQTETVWRQAEKYGVPRIIFVNKMDRAG  126 (668)
T ss_pred             --HHHHHHHHHHH---hCeEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEECCCCCC
Confidence              22333444555   8999999999998777766677777778899999999999864

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=99.48  E-value=2.7e-13  Score=112.49  Aligned_cols=158  Identities=16%  Similarity=0.122  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...+||+++|..|+|||||+-+++...+...+.+......-+... ...-...++||......          +......
T Consensus         7 ~kdVRIvliGD~G~GKtSLImSL~~eef~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~~~~----------~~~l~~E   76 (625)
T KOG1707|consen    7 LKDVRIVLIGDEGVGKTSLIMSLLEEEFVDAVPRRLPRILIPADVTPENVPTSIVDTSSDSDD----------RLCLRKE   76 (625)
T ss_pred             ccceEEEEECCCCccHHHHHHHHHhhhccccccccCCccccCCccCcCcCceEEEecccccch----------hHHHHHH
Confidence            446899999999999999999999987776665554433222222 22235789999753211          1112333


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ++.   ||++.++++.+++.+.. .-...|+..        .++|+|+|+||+|......... +.....+..++.+   
T Consensus        77 irk---A~vi~lvyavd~~~T~D-~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~-e~~~~pim~~f~E---  148 (625)
T KOG1707|consen   77 IRK---ADVICLVYAVDDESTVD-RISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSD-EVNTLPIMIAFAE---  148 (625)
T ss_pred             Hhh---cCEEEEEEecCChHHhh-hhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccch-hHHHHHHHHHhHH---
Confidence            344   89999999998876643 333456552        6799999999999876643311 1134444444433   


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                       --.+++|||++..++.|+|.+-++.
T Consensus       149 -iEtciecSA~~~~n~~e~fYyaqKa  173 (625)
T KOG1707|consen  149 -IETCIECSALTLANVSELFYYAQKA  173 (625)
T ss_pred             -HHHHHhhhhhhhhhhHhhhhhhhhe
Confidence             2468999999999999999887664

>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]

Probab=99.47  E-value=6.9e-13  Score=107.51  Aligned_cols=164  Identities=23%  Similarity=0.180  Sum_probs=107.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc--ccc------------cccCCCCeeEE---eeEEEecCeEEEEeCCCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK--ELA------------LTSKKPGKTQL---INHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~--~~~------------~~~~~~~~t~~---~~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      ...+|+|+.....|||||+..|+.++  |..            ......|.|.-   ....+.+.++.++||||+..+  
T Consensus         4 ~iRNIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADF--   81 (603)
T COG1217           4 DIRNIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADF--   81 (603)
T ss_pred             ccceeEEEEEecCCcchHHHHHHhhccccccccchhhhhcCccchhhhcCcEEEeccceeecCCeEEEEecCCCcCCc--
Confidence            35679999999999999999999764  111            01122233321   122334558999999997433  


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHH
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQ  180 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~  180 (219)
                        +|+.  +....    .   +|++++++|+.++.-.+.+-+++..-+.+.+.|+|+||+|........+.++-.+-|.+
T Consensus        82 --GGEV--ERvl~----M---VDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~  150 (603)
T COG1217          82 --GGEV--ERVLS----M---VDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVE  150 (603)
T ss_pred             --cchh--hhhhh----h---cceEEEEEEcccCCCCchhhhHHHHHHcCCCcEEEEeCCCCCCCCHHHHHHHHHHHHHH
Confidence              2222  11222    2   89999999999988888776777666778999999999999876433332222222222


Q ss_pred             HHHhcCCCCCCeEEeecCCC----------CChHHHHHHHHHHH
Q 027757          181 LIRENYPHHPPWIMTSSVTG----------LGRDELLLHMSQLR  214 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~----------~~v~el~~~l~~~~  214 (219)
                      .-......+.|++..|+..|          .++.-||+.|.+++
T Consensus       151 L~A~deQLdFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hv  194 (603)
T COG1217         151 LGATDEQLDFPIVYASARNGTASLDPEDEADDMAPLFETILDHV  194 (603)
T ss_pred             hCCChhhCCCcEEEeeccCceeccCccccccchhHHHHHHHHhC
Confidence            11112233679999999987          36788888887764

>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=99.47  E-value=2.2e-12  Score=104.18  Aligned_cols=155  Identities=21%  Similarity=0.210  Sum_probs=116.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      -|+..|....|||||+.++++.. .........|+|.+..++..   ++...++|.||+.             .+....+
T Consensus         2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~-------------~~i~~mi   68 (447)
T COG3276           2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHP-------------DFISNLL   68 (447)
T ss_pred             eEEEeeeeeccchhhhhhhcccccccchhhhhcCceEeeeeEeccCCCCceEEeeCCCcH-------------HHHHHHH
Confidence            46778999999999999999863 33445566788888776654   3479999999973             3334444


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-CCCCeEE
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-HHPPWIM  194 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~  194 (219)
                      .+....|..++|+|+.++...+..+.+..+.-.+++ .++|+||+|+.+.       ..+++..+++..... ...++|.
T Consensus        69 ag~~~~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~-------~r~e~~i~~Il~~l~l~~~~i~~  141 (447)
T COG3276          69 AGLGGIDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDE-------ARIEQKIKQILADLSLANAKIFK  141 (447)
T ss_pred             hhhcCCceEEEEEeCccCcchhhHHHHHHHHhcCCCceEEEEeccccccH-------HHHHHHHHHHHhhcccccccccc
Confidence            444457999999999998888887777777776665 5999999999875       244555544433322 3467899


Q ss_pred             eecCCCCChHHHHHHHHHHHh
Q 027757          195 TSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +|+++|.|+++|.+.|.++.+
T Consensus       142 ~s~~~g~GI~~Lk~~l~~L~~  162 (447)
T COG3276         142 TSAKTGRGIEELKNELIDLLE  162 (447)
T ss_pred             cccccCCCHHHHHHHHHHhhh
Confidence            999999999999999998773

>KOG1144 consensus Translation initiation factor 5B (eIF-5B) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.8e-12  Score=110.12  Aligned_cols=164  Identities=22%  Similarity=0.257  Sum_probs=115.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---------------------CeEEEEeCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---------------------KSWYIVDLPGYGF   97 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---------------------~~~~liDtpg~~~   97 (219)
                      .|-|||+|...+|||-|+..+-+.+  -......|.|..++.....                     ..+.+|||||+  
T Consensus       475 SPIcCilGHVDTGKTKlld~ir~tN--VqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpgh--  550 (1064)
T KOG1144|consen  475 SPICCILGHVDTGKTKLLDKIRGTN--VQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGH--  550 (1064)
T ss_pred             CceEEEeecccccchHHHHHhhccc--cccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCc--
Confidence            5789999999999999999999863  3344445555544322210                     14688999996  


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccccc----------
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAK----------  167 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~----------  167 (219)
                                 ++|....-++..-||..|+|+|+.++...+..+.+..++..+.|+++.+||+|.+-.=.          
T Consensus       551 -----------EsFtnlRsrgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~~  619 (1064)
T KOG1144|consen  551 -----------ESFTNLRSRGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVEA  619 (1064)
T ss_pred             -----------hhhhhhhhccccccceEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhhcccccCCCchHHHH
Confidence                       34555555566669999999999999998889999999999999999999999653111          


Q ss_pred             --------CCCchHhHHHHHHHHHhcC------------CCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          168 --------GRRPDENIKSFQQLIRENY------------PHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       168 --------~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                              ...+...+...+.++..+.            +..+.++++||.+|.|+.+|+.+|.++.+.+
T Consensus       620 lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~ltQk~  689 (1064)
T KOG1144|consen  620 LKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLTQKT  689 (1064)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHcccchhheeecccccceEEeeecccccCCCcHHHHHHHHHHHHHH
Confidence                    0111122222222222211            1235689999999999999999999876654

>PLN00116 translation elongation factor EF-2 subunit; Provisional

Probab=99.46  E-value=1.8e-12  Score=116.20  Aligned_cols=113  Identities=17%  Similarity=0.176  Sum_probs=80.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC---------------CeeEE---eeEEEe---------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKP---------------GKTQL---INHFLV---------------   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~---------------~~t~~---~~~~~~---------------   83 (219)
                      ....+|+|+|..++|||||+++|+... -.......               +.|..   ....+.               
T Consensus        17 ~~Irni~iiGhvd~GKTTL~~~Ll~~~-g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~   95 (843)
T PLN00116         17 HNIRNMSVIAHVDHGKSTLTDSLVAAA-GIIAQEVAGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDG   95 (843)
T ss_pred             cCccEEEEEcCCCCCHHHHHHHHHHhc-CCcccccCCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCC
Confidence            457799999999999999999998652 11000111               11111   111110               


Q ss_pred             -cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccc
Q 027757           84 -NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK  162 (219)
Q Consensus        84 -~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~  162 (219)
                       +..+.++||||+.             .+..........+|++|+|+|+.++...+...+++++...++|+++++||+|+
T Consensus        96 ~~~~inliDtPGh~-------------dF~~e~~~al~~~D~ailVvda~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~  162 (843)
T PLN00116         96 NEYLINLIDSPGHV-------------DFSSEVTAALRITDGALVVVDCIEGVCVQTETVLRQALGERIRPVLTVNKMDR  162 (843)
T ss_pred             CceEEEEECCCCHH-------------HHHHHHHHHHhhcCEEEEEEECCCCCcccHHHHHHHHHHCCCCEEEEEECCcc
Confidence             2357899999963             23333344445589999999999998888888899998899999999999998


Q ss_pred             c
Q 027757          163 M  163 (219)
Q Consensus       163 ~  163 (219)
                      .
T Consensus       163 ~  163 (843)
T PLN00116        163 C  163 (843)
T ss_pred             c
Confidence            7

>PTZ00416 elongation factor 2; Provisional

Probab=99.46  E-value=1.6e-12  Score=116.40  Aligned_cols=113  Identities=19%  Similarity=0.187  Sum_probs=79.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCC---------------CCeeEEe---eEEEe----------cCeEE
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKK---------------PGKTQLI---NHFLV----------NKSWY   88 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~---------------~~~t~~~---~~~~~----------~~~~~   88 (219)
                      ....+|+|+|..++|||||+++|+... -......               .+.|...   ...+.          +..+.
T Consensus        17 ~~irni~iiGh~d~GKTTL~~~Ll~~~-g~i~~~~~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~   95 (836)
T PTZ00416         17 DQIRNMSVIAHVDHGKSTLTDSLVCKA-GIISSKNAGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLIN   95 (836)
T ss_pred             cCcCEEEEECCCCCCHHHHHHHHHHhc-CCcccccCCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEE
Confidence            345699999999999999999999742 1110111               1122111   11111          23589


Q ss_pred             EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ++||||+..             +..........+|++|+|+|+.++...+...+++++...++|+++++||+|+.
T Consensus        96 liDtPG~~~-------------f~~~~~~al~~~D~ailVvda~~g~~~~t~~~~~~~~~~~~p~iv~iNK~D~~  157 (836)
T PTZ00416         96 LIDSPGHVD-------------FSSEVTAALRVTDGALVVVDCVEGVCVQTETVLRQALQERIRPVLFINKVDRA  157 (836)
T ss_pred             EEcCCCHHh-------------HHHHHHHHHhcCCeEEEEEECCCCcCccHHHHHHHHHHcCCCEEEEEEChhhh
Confidence            999999742             22233334445899999999999988888888888888899999999999987

>TIGR00073 hypB hydrogenase accessory protein HypB

Probab=99.45  E-value=1.7e-12  Score=98.27  Aligned_cols=82  Identities=17%  Similarity=0.127  Sum_probs=52.3

Q ss_pred             cEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCC
Q 027757          123 VGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLG  202 (219)
Q Consensus       123 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~  202 (219)
                      +..+.|+|+.+.....    .........|.++++||+|+.+...     ...++..+.+.... ...+++++||+++.|
T Consensus       125 ~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~~~~-----~~~~~~~~~l~~~~-~~~~i~~~Sa~~g~g  194 (207)
T TIGR00073       125 HMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAEAVG-----FDVEKMKADAKKIN-PEAEIILMSLKTGEG  194 (207)
T ss_pred             CeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccccch-----hhHHHHHHHHHHhC-CCCCEEEEECCCCCC
Confidence            4445677776543221    1222224568899999999975311     12333333343322 347899999999999


Q ss_pred             hHHHHHHHHHHH
Q 027757          203 RDELLLHMSQLR  214 (219)
Q Consensus       203 v~el~~~l~~~~  214 (219)
                      ++++++++.+..
T Consensus       195 v~~l~~~i~~~~  206 (207)
T TIGR00073       195 LDEWLEFLEGQV  206 (207)
T ss_pred             HHHHHHHHHHhh
Confidence            999999998865

HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.

>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components

Probab=99.44  E-value=6e-13  Score=101.37  Aligned_cols=152  Identities=22%  Similarity=0.297  Sum_probs=89.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccc-----------cccCCCC------------eeEEeeEEE-----------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELA-----------LTSKKPG------------KTQLINHFL-----------   82 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~-----------~~~~~~~------------~t~~~~~~~-----------   82 (219)
                      ...++|.|.|+||+|||||+++|... +..           ..++..+            ...+...+.           
T Consensus        27 g~a~~iGiTG~PGaGKSTli~~l~~~-~~~~g~~VaVlAVDPSSp~tGGAlLGDRiRM~~~~~d~~vfIRS~atRG~lGG  105 (266)
T PF03308_consen   27 GRAHVIGITGPPGAGKSTLIDALIRE-LRERGKRVAVLAVDPSSPFTGGALLGDRIRMQELSRDPGVFIRSMATRGSLGG  105 (266)
T ss_dssp             T-SEEEEEEE-TTSSHHHHHHHHHHH-HHHTT--EEEEEE-GGGGCC---SS--GGGCHHHHTSTTEEEEEE---SSHHH
T ss_pred             CCceEEEeeCCCCCcHHHHHHHHHHH-HhhcCCceEEEEECCCCCCCCCcccccHHHhcCcCCCCCEEEeecCcCCCCCC
Confidence            34679999999999999999999864 111           1111111            000001110           


Q ss_pred             --------------ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH--HHHHHh
Q 027757           83 --------------VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL--DCANWL  146 (219)
Q Consensus        83 --------------~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~  146 (219)
                                    .+..++++.|.|++..        +        ....+.+|.+++|+-+.-++.-+-.  .++++ 
T Consensus       106 ls~~t~~~v~ll~aaG~D~IiiETVGvGQs--------E--------~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimEi-  168 (266)
T PF03308_consen  106 LSRATRDAVRLLDAAGFDVIIIETVGVGQS--------E--------VDIADMADTVVLVLVPGLGDEIQAIKAGIMEI-  168 (266)
T ss_dssp             HHHHHHHHHHHHHHTT-SEEEEEEESSSTH--------H--------HHHHTTSSEEEEEEESSTCCCCCTB-TTHHHH-
T ss_pred             ccHhHHHHHHHHHHcCCCEEEEeCCCCCcc--------H--------HHHHHhcCeEEEEecCCCccHHHHHhhhhhhh-
Confidence                          0357899999998622        1        1112338999999998876554432  23333 


Q ss_pred             ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc----CCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN----YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       147 ~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                           +-++|+||+|+...+      .-..++...+...    ..+.+|++.+||.++.|+++|++.|.++...+
T Consensus       169 -----aDi~vVNKaD~~gA~------~~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~l  232 (266)
T PF03308_consen  169 -----ADIFVVNKADRPGAD------RTVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDYL  232 (266)
T ss_dssp             ------SEEEEE--SHHHHH------HHHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             -----ccEEEEeCCChHHHH------HHHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence                 449999999965432      2223333333221    12357999999999999999999999877654

In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.

>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []

Probab=99.44  E-value=4.3e-12  Score=99.92  Aligned_cols=127  Identities=17%  Similarity=0.242  Sum_probs=72.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCC--------CCeeEEee--EEEe---cCeEEEEeCCCCCCCCCCcch-
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKK--------PGKTQLIN--HFLV---NKSWYIVDLPGYGFAKAPDVT-  104 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~--------~~~t~~~~--~~~~---~~~~~liDtpg~~~~~~~~~~-  104 (219)
                      .++|+|+|.+|+|||||+|.|++..........        ........  ....   ...+.++||||++.......- 
T Consensus         4 ~fnImVvG~sG~GKTTFIntL~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~l~LtiiDTpGfGd~i~n~~~~   83 (281)
T PF00735_consen    4 NFNIMVVGESGLGKTTFINTLFNSDIISEDSSIPPPSASISRTLEIEERTVELEENGVKLNLTIIDTPGFGDNIDNSDCW   83 (281)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTSS---------S------SCEEEEEEEEEEEETCEEEEEEEEEEC-CSSSSTHCHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhcccccccccccccccccccccceeeEEEEeccCCcceEEEEEeCCCccccccchhhh
Confidence            578999999999999999999997433222111        11111111  1111   226899999999754332211 


Q ss_pred             -------hhhHHHHHHHHhh------ccCCccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757          105 -------RMDWSSFTKGYFL------NRESLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       105 -------~~~~~~~~~~~~~------~~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  166 (219)
                             ...|.........      ....+|+|+|+++++ .+.+..+.+.++.+.. .+++|.|+.|+|....+
T Consensus        84 ~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~Ls~-~vNvIPvIaKaD~lt~~  158 (281)
T PF00735_consen   84 EPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRLSK-RVNVIPVIAKADTLTPE  158 (281)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHHTT-TSEEEEEESTGGGS-HH
T ss_pred             HHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHhcc-cccEEeEEecccccCHH
Confidence                   1111222111111      111368999999987 4577777777777665 58999999999988753

Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.

>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains

Probab=99.43  E-value=6.6e-12  Score=106.81  Aligned_cols=130  Identities=17%  Similarity=0.158  Sum_probs=78.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ....+|+++|.+|+||||++|.|++..........++++.....  ...+..+.++||||+.....+.............
T Consensus       116 dfslrIvLVGKTGVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~idG~~L~VIDTPGL~dt~~dq~~neeILk~Ik~  195 (763)
T TIGR00993       116 DFSLNILVLGKSGVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQGVKIRVIDTPGLKSSASDQSKNEKILSSVKK  195 (763)
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhccccccccCCCCCceEEEEEEEEECCceEEEEECCCCCccccchHHHHHHHHHHHH
Confidence            44679999999999999999999997433322223444443222  2234579999999987553322111111121222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCc-ccHHHHHHhcc-----CCCcEEEEEEccccccccc
Q 027757          115 YFLNRESLVGVLLLIDASVPPQK-IDLDCANWLGR-----NNIPLTFVFTKCDKMKVAK  167 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~  167 (219)
                      ++.. ..+|++|+|......... .+...++.+..     .-..+|||+|..|..++++
T Consensus       196 ~Lsk-~gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lppdg  253 (763)
T TIGR00993       196 FIKK-NPPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAPPDG  253 (763)
T ss_pred             HHhc-CCCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCCCCC
Confidence            3332 237999999887643332 23334444432     3357899999999887543

The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.

>TIGR00101 ureG urease accessory protein UreG

Probab=99.43  E-value=5.4e-12  Score=94.70  Aligned_cols=84  Identities=13%  Similarity=0.073  Sum_probs=56.1

Q ss_pred             ccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 027757          122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL  201 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  201 (219)
                      +|.+|.|+|+.+.......    ........-++++||+|+.+..     ..+.+...+.+... +...+++++||++|.
T Consensus       113 ~~~~i~vvD~~~~~~~~~~----~~~qi~~ad~~~~~k~d~~~~~-----~~~~~~~~~~~~~~-~~~~~i~~~Sa~~g~  182 (199)
T TIGR00101       113 ADLTIFVIDVAAGDKIPRK----GGPGITRSDLLVINKIDLAPMV-----GADLGVMERDAKKM-RGEKPFIFTNLKTKE  182 (199)
T ss_pred             hCcEEEEEEcchhhhhhhh----hHhHhhhccEEEEEhhhccccc-----cccHHHHHHHHHHh-CCCCCEEEEECCCCC
Confidence            4779999999876553211    1112223449999999998531     12333444444433 334799999999999


Q ss_pred             ChHHHHHHHHHHHh
Q 027757          202 GRDELLLHMSQLRN  215 (219)
Q Consensus       202 ~v~el~~~l~~~~~  215 (219)
                      |++++++++.+.+.
T Consensus       183 gi~el~~~i~~~~~  196 (199)
T TIGR00101       183 GLDTVIDWIEHYAL  196 (199)
T ss_pred             CHHHHHHHHHhhcC
Confidence            99999999987654

This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.

>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]

Probab=99.43  E-value=7.9e-13  Score=102.06  Aligned_cols=158  Identities=22%  Similarity=0.297  Sum_probs=96.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc------c--ccCCC---C------------eeEEeeEEE----------
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELA------L--TSKKP---G------------KTQLINHFL----------   82 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~------~--~~~~~---~------------~t~~~~~~~----------   82 (219)
                      ..+..+|.|.|.||+|||||+..|...- ..      .  ++|..   +            ...+...+.          
T Consensus        48 tG~a~viGITG~PGaGKSTli~~L~~~l-~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lG  126 (323)
T COG1703          48 TGNAHVIGITGVPGAGKSTLIEALGREL-RERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLG  126 (323)
T ss_pred             CCCCcEEEecCCCCCchHHHHHHHHHHH-HHCCcEEEEEEECCCCCCCCccccccHhhHHhhccCCCeEEeecCCCccch
Confidence            3567799999999999999999988641 11      0  11111   1            000111110          


Q ss_pred             ---------------ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc
Q 027757           83 ---------------VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG  147 (219)
Q Consensus        83 ---------------~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~  147 (219)
                                     .++.++++.|.|.+.+..+         +       .+-+|.+++|.=+.-++..+-.+    ..
T Consensus       127 GlS~at~~~i~~ldAaG~DvIIVETVGvGQsev~---------I-------~~~aDt~~~v~~pg~GD~~Q~iK----~G  186 (323)
T COG1703         127 GLSRATREAIKLLDAAGYDVIIVETVGVGQSEVD---------I-------ANMADTFLVVMIPGAGDDLQGIK----AG  186 (323)
T ss_pred             hhhHHHHHHHHHHHhcCCCEEEEEecCCCcchhH---------H-------hhhcceEEEEecCCCCcHHHHHH----hh
Confidence                           1347899999998743211         1       11279888888776554432211    11


Q ss_pred             cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH---hcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          148 RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR---ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       148 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      -..+.-++|+||.|....+   ....++...++...   ...++.+|++.+||..|.|+++|++.+.++.+.+
T Consensus       187 imEiaDi~vINKaD~~~A~---~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~  256 (323)
T COG1703         187 IMEIADIIVINKADRKGAE---KAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL  256 (323)
T ss_pred             hhhhhheeeEeccChhhHH---HHHHHHHHHHHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence            1345569999999965432   11122222233221   2234578999999999999999999999987764

>TIGR02836 spore_IV_A stage IV sporulation protein A

Probab=99.42  E-value=3.5e-12  Score=103.07  Aligned_cols=162  Identities=15%  Similarity=0.196  Sum_probs=97.1

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcc---cc-----------cccCCCC---eeEEeeE-------EEec----CeE
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKE---LA-----------LTSKKPG---KTQLINH-------FLVN----KSW   87 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~---~~-----------~~~~~~~---~t~~~~~-------~~~~----~~~   87 (219)
                      .++++-|+++|+.++|||||+|+|.+.-.   .+           ..++.+|   +|.++.+       ....    .++
T Consensus        14 T~G~IyIGvvGpvrtGKSTfIn~fm~q~VlP~i~~~~~k~Ra~DELpqs~~GktItTTePkfvP~kAvEI~~~~~~~~~V   93 (492)
T TIGR02836        14 TQGDIYIGVVGPVRTGKSTFIKKFMELLVLPNISNEYDKERAQDELPQSAAGKTIMTTEPKFVPNEAVEININEGTKFKV   93 (492)
T ss_pred             hCCcEEEEEEcCCCCChHHHHHHHHhhhccccccchhHHhHHHhccCcCCCCCCcccCCCccccCcceEEeccCCCcccE
Confidence            36788999999999999999999999721   22           3445556   4444333       2222    589


Q ss_pred             EEEeCCCCCCCCCCcchhhhHHH---------------------HHHHHhhccCCccEEEEEE-eCC------CCCCccc
Q 027757           88 YIVDLPGYGFAKAPDVTRMDWSS---------------------FTKGYFLNRESLVGVLLLI-DAS------VPPQKID  139 (219)
Q Consensus        88 ~liDtpg~~~~~~~~~~~~~~~~---------------------~~~~~~~~~~~~d~vi~v~-d~~------~~~~~~~  139 (219)
                      .++||+|+....  .-|.++-+.                     =++..+..  .+|..|+|. |.+      +.....+
T Consensus        94 rlIDcvG~~v~G--alG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~d--hstIgivVtTDgsi~dI~Re~y~~aE  169 (492)
T TIGR02836        94 RLVDCVGYTVKG--ALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQE--HSTIGVVVTTDGTITDIPREDYVEAE  169 (492)
T ss_pred             EEEECCCcccCC--CccceeccccccccCCcccccCchhhhhhhhHHHHHHh--cCcEEEEEEcCCCccccccccchHHH
Confidence            999999985321  111111111                     02222221  268788888 775      2334445


Q ss_pred             HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          140 LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       140 ~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      .+....+++.++|+++|+||+|-...        ...++.+.+...++  .+++.+|+.+ -.-+++.+.+.+
T Consensus       170 e~~i~eLk~~~kPfiivlN~~dp~~~--------et~~l~~~l~eky~--vpvl~v~c~~-l~~~DI~~il~~  231 (492)
T TIGR02836       170 ERVIEELKELNKPFIILLNSTHPYHP--------ETEALRQELEEKYD--VPVLAMDVES-MRESDILSVLEE  231 (492)
T ss_pred             HHHHHHHHhcCCCEEEEEECcCCCCc--------hhHHHHHHHHHHhC--CceEEEEHHH-cCHHHHHHHHHH
Confidence            67888888999999999999994322        12233333333333  5777777654 223344443333

A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.

>PRK07560 elongation factor EF-2; Reviewed

Probab=99.42  E-value=5.3e-12  Score=111.87  Aligned_cols=115  Identities=14%  Similarity=0.124  Sum_probs=76.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-c-cccC------------CCCeeEEe---e-EEE---ecCeEEEEeCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKEL-A-LTSK------------KPGKTQLI---N-HFL---VNKSWYIVDLPGY   95 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-~-~~~~------------~~~~t~~~---~-~~~---~~~~~~liDtpg~   95 (219)
                      .....|+++|..++|||||+++|+...-. . ....            ..+.|...   . .+.   .+..+.++||||+
T Consensus        18 ~~iRni~iigh~d~GKTTL~e~ll~~~g~i~~~~~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~i~liDtPG~   97 (731)
T PRK07560         18 EQIRNIGIIAHIDHGKTTLSDNLLAGAGMISEELAGEQLALDFDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGH   97 (731)
T ss_pred             hcccEEEEEEeCCCCHHHHHHHHHHHcCCcchhhcCcceecCccHHHHHhhhhhhccceEEEEEecCCcEEEEEEcCCCc
Confidence            34668999999999999999999864200 0 0000            00111111   1 111   1346899999997


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ...          .......++.   +|++|+|+|+..+.......+++.+...++|.++++||+|+..
T Consensus        98 ~df----------~~~~~~~l~~---~D~avlVvda~~g~~~~t~~~~~~~~~~~~~~iv~iNK~D~~~  153 (731)
T PRK07560         98 VDF----------GGDVTRAMRA---VDGAIVVVDAVEGVMPQTETVLRQALRERVKPVLFINKVDRLI  153 (731)
T ss_pred             cCh----------HHHHHHHHHh---cCEEEEEEECCCCCCccHHHHHHHHHHcCCCeEEEEECchhhc
Confidence            532          1222333344   8999999999998877777777776667789999999999763

>PTZ00258 GTP-binding protein; Provisional

Probab=99.42  E-value=1.3e-11  Score=100.69  Aligned_cols=88  Identities=22%  Similarity=0.261  Sum_probs=63.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--------------------cCeEEEEeCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--------------------NKSWYIVDLPGYG   96 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~liDtpg~~   96 (219)
                      ....+|+|+|.||+|||||+|+|++..  ....+.+++|........                    +.++.++||||+.
T Consensus        19 ~~~~kvgIVG~PNvGKSTLfnaLt~~~--~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv   96 (390)
T PTZ00258         19 GNNLKMGIVGLPNVGKSTTFNALCKQQ--VPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLV   96 (390)
T ss_pred             CCCcEEEEECCCCCChHHHHHHHhcCc--ccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcC
Confidence            445799999999999999999998863  677888888876543322                    1248999999986


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS  132 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  132 (219)
                      .....  +    ..+...++...+.+|++++|+|+.
T Consensus        97 ~ga~~--g----~gLg~~fL~~Ir~aD~il~VVd~f  126 (390)
T PTZ00258         97 KGASE--G----EGLGNAFLSHIRAVDGIYHVVRAF  126 (390)
T ss_pred             cCCcc--h----hHHHHHHHHHHHHCCEEEEEEeCC
Confidence            33221  1    223345555566699999999985

>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=99.41  E-value=2.1e-12  Score=100.28  Aligned_cols=161  Identities=18%  Similarity=0.175  Sum_probs=105.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc--------------CCC-----CeeE---E--e-------eEEEecC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS--------------KKP-----GKTQ---L--I-------NHFLVNK   85 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~--------------~~~-----~~t~---~--~-------~~~~~~~   85 (219)
                      ....+|..+|....|||||..+|.|-- -...+              ...     .|..   +  .       .....-.
T Consensus         8 Qp~vNIG~vGHVdHGKtTlv~AlsGvw-T~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R   86 (415)
T COG5257           8 QPEVNIGMVGHVDHGKTTLTKALSGVW-TDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVR   86 (415)
T ss_pred             CcceEeeeeeecccchhhheehhhcee-eechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEE
Confidence            346789999999999999999999862 00000              000     0000   0  0       0001123


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccC-CCcEEEEEEccccc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRN-NIPLTFVFTKCDKM  163 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~-~~p~iiv~nK~D~~  163 (219)
                      .+.|+|.||+             +-+....+.++.-.|+.++|++++++. ..+..+.+-.+.-. -+.+++|=||+|+.
T Consensus        87 ~VSfVDaPGH-------------e~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV  153 (415)
T COG5257          87 RVSFVDAPGH-------------ETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLV  153 (415)
T ss_pred             EEEEeeCCch-------------HHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhccceEEEEeccccee
Confidence            6789999996             345566777777789999999999742 22223333333322 35789999999998


Q ss_pred             ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ..+.   ..+.+++..+-+.-...+..|++++||..+.|++-|+++|.+..
T Consensus       154 ~~E~---AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~I  201 (415)
T COG5257         154 SRER---ALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYI  201 (415)
T ss_pred             cHHH---HHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhC
Confidence            7532   23444444444444555678999999999999999999998754

>TIGR00490 aEF-2 translation elongation factor aEF-2

Probab=99.41  E-value=2.1e-12  Score=114.11  Aligned_cols=115  Identities=13%  Similarity=0.038  Sum_probs=77.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-----------cccccC---CCCeeEEee-------EEEecCeEEEEeCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE-----------LALTSK---KPGKTQLIN-------HFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----------~~~~~~---~~~~t~~~~-------~~~~~~~~~liDtpg~~   96 (219)
                      ...+|+++|..++|||||+++|+...-           .....+   ..+.|....       ..+.+..+.++||||+.
T Consensus        18 ~irnI~ivGh~~~GKTTL~~~ll~~~g~i~~~~~~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~i~liDTPG~~   97 (720)
T TIGR00490        18 FIRNIGIVAHIDHGKTTLSDNLLAGAGMISEELAGQQLYLDFDEQEQERGITINAANVSMVHEYEGNEYLINLIDTPGHV   97 (720)
T ss_pred             cccEEEEEEeCCCCHHHHHHHHHHHcCCCchhcCCceeecCCCHHHHhhcchhhcccceeEEeecCCceEEEEEeCCCcc
Confidence            467999999999999999999985310           001110   112222111       11224478999999975


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      ..          .......++.   +|++|+|+|+.++.......+++.+...++|.++++||+|....
T Consensus        98 ~f----------~~~~~~al~~---aD~~llVvda~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~  153 (720)
T TIGR00490        98 DF----------GGDVTRAMRA---VDGAIVVVCAVEGVMPQTETVLRQALKENVKPVLFINKVDRLIN  153 (720)
T ss_pred             cc----------HHHHHHHHHh---cCEEEEEEecCCCCCccHHHHHHHHHHcCCCEEEEEEChhcccc
Confidence            32          2223344455   89999999999887777777777776778899999999998643

This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.

>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]

Probab=99.41  E-value=6.8e-13  Score=96.50  Aligned_cols=163  Identities=15%  Similarity=0.078  Sum_probs=90.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc----ccccccCCCCeeEEeeE-EE-ecCeEEEEeCC-CCCCCCCCcchhhhHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK----ELALTSKKPGKTQLINH-FL-VNKSWYIVDLP-GYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~----~~~~~~~~~~~t~~~~~-~~-~~~~~~liDtp-g~~~~~~~~~~~~~~~~~~  112 (219)
                      ++|.++|++|||||+|+.+++..-    ..+.......+..+... .. .+.++.-+.|. |+  +..........+.+.
T Consensus        14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C--H~da~m~~~ai~~l~   91 (202)
T COG0378          14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC--HLDASMNLEAIEELV   91 (202)
T ss_pred             EEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeechhhHHHHHhCCCCeeEEeccCCcc--CCcHHHHHHHHHHHh
Confidence            699999999999999999988751    11112222222111100 01 23345555666 33  111111222222222


Q ss_pred             HHHhh----ccC------------Ccc-EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhH
Q 027757          113 KGYFL----NRE------------SLV-GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI  175 (219)
Q Consensus       113 ~~~~~----~~~------------~~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  175 (219)
                      ..+-.    -.+            -.| .-|+|+|+++++.-..+.. ..+.   ..-++|+||.|+.+.-++     ++
T Consensus        92 ~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~K~g-P~i~---~aDllVInK~DLa~~v~~-----dl  162 (202)
T COG0378          92 LDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPRKGG-PGIF---KADLLVINKTDLAPYVGA-----DL  162 (202)
T ss_pred             hcCCcCCEEEEecCcceecccCcchhhceEEEEEECCCCCCCcccCC-Ccee---EeeEEEEehHHhHHHhCc-----cH
Confidence            21100    000            013 7789999988665432211 1111   145999999999886433     34


Q ss_pred             HHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          176 KSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       176 ~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +-+.+.... .++..+++++|.++|.|++++++|+...+
T Consensus       163 evm~~da~~-~np~~~ii~~n~ktg~G~~~~~~~i~~~~  200 (202)
T COG0378         163 EVMARDAKE-VNPEAPIIFTNLKTGEGLDEWLRFIEPQA  200 (202)
T ss_pred             HHHHHHHHH-hCCCCCEEEEeCCCCcCHHHHHHHHHhhc
Confidence            444444443 23447999999999999999999998754

>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity

Probab=99.41  E-value=1.5e-12  Score=100.26  Aligned_cols=94  Identities=22%  Similarity=0.205  Sum_probs=49.5

Q ss_pred             ccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEccccccccc--CCCchHh-----------HHHHHHHHH
Q 027757          122 LVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAK--GRRPDEN-----------IKSFQQLIR  183 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~--~~~~~~~-----------~~~~~~~~~  183 (219)
                      .-++++++|+.........     -....+-+.+.|.+.|+||+|+.....  ....-.+           ...+.+.+.
T Consensus       123 ~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l~~~i~  202 (238)
T PF03029_consen  123 RLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKLNEEIA  202 (238)
T ss_dssp             --EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHHHHHHH
T ss_pred             ceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence            3478999999876553322     111222347899999999999986210  0000000           122222222


Q ss_pred             h---cCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          184 E---NYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       184 ~---~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .   .+....+++++|+.++.|+.+++..+.++..
T Consensus       203 ~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~~  237 (238)
T PF03029_consen  203 ELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKANQ  237 (238)
T ss_dssp             HHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHHH
T ss_pred             HHHhhcCCCceEEEEECCChHHHHHHHHHHHHHhc
Confidence            2   2233348999999999999999999988764

; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.

>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another

Probab=99.41  E-value=2.3e-12  Score=94.28  Aligned_cols=66  Identities=21%  Similarity=0.363  Sum_probs=45.0

Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHH-HhccCCCcEEEEEEcc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN-WLGRNNIPLTFVFTKC  160 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-~~~~~~~p~iiv~nK~  160 (219)
                      .+.++||||+..... ..     ..+...|+..   +|++|||+++.+..+..+...+. ........+++|+||.
T Consensus       102 ~~~lvDtPG~~~~~~-~~-----~~~~~~~~~~---~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~  168 (168)
T PF00350_consen  102 NLTLVDTPGLNSTNS-EH-----TEITEEYLPK---ADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA  168 (168)
T ss_dssp             SEEEEEEEEBHSSHT-TT-----SHHHHHHHST---TEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred             ceEEEeCCccccchh-hh-----HHHHHHhhcc---CCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence            579999999864211 11     2556666655   89999999999977766544443 4444566699999985

Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....

>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]

Probab=99.40  E-value=4e-12  Score=99.96  Aligned_cols=153  Identities=16%  Similarity=0.137  Sum_probs=98.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc---------cccc----------------------CCCCeeEEeeEE---Ee
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKEL---------ALTS----------------------KKPGKTQLINHF---LV   83 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~---------~~~~----------------------~~~~~t~~~~~~---~~   83 (219)
                      ..+|++-+|...-|||||+-+|+.....         ...+                      ..-|.|.+..+.   +.
T Consensus         5 ~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT~   84 (431)
T COG2895           5 SLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFSTE   84 (431)
T ss_pred             cceeEEEeccccCcchhhhhhhhhcchhhhHHHHHHHhcccccccCCCCccchhhhhhhhHHHHhcCceEEEEeeecccc
Confidence            4679999999999999999999965300         0111                      122455544322   23


Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcccc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDK  162 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~  162 (219)
                      ..+|++.||||+.             .+++....++..||+.|+++|+..+.-.+.++......-.+ ..+++.+||+||
T Consensus        85 KRkFIiADTPGHe-------------QYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDL  151 (431)
T COG2895          85 KRKFIIADTPGHE-------------QYTRNMATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDL  151 (431)
T ss_pred             cceEEEecCCcHH-------------HHhhhhhcccccccEEEEEEecchhhHHHhHHHHHHHHHhCCcEEEEEEeeecc
Confidence            4589999999962             33344445666799999999999877666654433333334 358999999999


Q ss_pred             cccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChH
Q 027757          163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRD  204 (219)
Q Consensus       163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~  204 (219)
                      .+..+ +.+.+...++..-..........++++||..|+|+-
T Consensus       152 vdy~e-~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~  192 (431)
T COG2895         152 VDYSE-EVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV  192 (431)
T ss_pred             cccCH-HHHHHHHHHHHHHHHHcCCCcceEEechhccCCccc
Confidence            98642 222222223222222233345689999999999873

>TIGR00750 lao LAO/AO transport system ATPase

Probab=99.38  E-value=7e-12  Score=100.08  Aligned_cols=112  Identities=21%  Similarity=0.165  Sum_probs=62.6

Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      +..++++||+|.+....             ....   .+|.++++.+..   +..+...... .-.++|.++|+||+|+.
T Consensus       126 g~D~viidT~G~~~~e~-------------~i~~---~aD~i~vv~~~~---~~~el~~~~~-~l~~~~~ivv~NK~Dl~  185 (300)
T TIGR00750       126 GYDVIIVETVGVGQSEV-------------DIAN---MADTFVVVTIPG---TGDDLQGIKA-GLMEIADIYVVNKADGE  185 (300)
T ss_pred             CCCEEEEeCCCCchhhh-------------HHHH---hhceEEEEecCC---ccHHHHHHHH-HHhhhccEEEEEccccc
Confidence            34789999999752211             0111   268777775433   2222211111 11468889999999987


Q ss_pred             ccccCCCchHhHHHHHHHHHhc-CCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          164 KVAKGRRPDENIKSFQQLIREN-YPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..................+... .....+++++||+++.|++++++++.+...
T Consensus       186 ~~~~~~~~~~~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~  238 (300)
T TIGR00750       186 GATNVTIARLMLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT  238 (300)
T ss_pred             chhHHHHHHHHHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence            6421000000000001111111 122357999999999999999999988654

Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.

>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]

Probab=99.34  E-value=1.4e-11  Score=99.36  Aligned_cols=113  Identities=20%  Similarity=0.225  Sum_probs=77.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc--------cc------------ccccCCCCe--eEEeeEEE-ecCeEEEEeCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK--------EL------------ALTSKKPGK--TQLINHFL-VNKSWYIVDLPGY   95 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~--------~~------------~~~~~~~~~--t~~~~~~~-~~~~~~liDtpg~   95 (219)
                      +...+|+-.|.||||||.+.|+--.        ..            +......|.  +.+...+. .+..+.++||||+
T Consensus        12 RRTFAIISHPDAGKTTlTEkLLlfGgaIq~AG~Vk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPGH   91 (528)
T COG4108          12 RRTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPGH   91 (528)
T ss_pred             hcceeEEecCCCCcccHHHHHHHhcchhhhcceeeeccCCcccccHHHHHHHhcCceEEeeEEEeccCCeEEeccCCCCc
Confidence            4568999999999999999887210        00            011111222  22222222 2346899999998


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      .+..     +..|        |-.-.+|.+|+|+|+..+...+.+++.+.-+..++|++-.+||+|...
T Consensus        92 eDFS-----EDTY--------RtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~  147 (528)
T COG4108          92 EDFS-----EDTY--------RTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREG  147 (528)
T ss_pred             cccc-----hhHH--------HHHHhhheeeEEEecccCccHHHHHHHHHHhhcCCceEEEeecccccc
Confidence            5432     2223        333337999999999999998888888877778999999999999754

>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]

Probab=99.34  E-value=3.2e-11  Score=95.64  Aligned_cols=133  Identities=18%  Similarity=0.236  Sum_probs=84.5

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--cCCCC----eeEEe----eEEEec---CeEEEEeCCCCCCCCC
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALT--SKKPG----KTQLI----NHFLVN---KSWYIVDLPGYGFAKA  100 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--~~~~~----~t~~~----~~~~~~---~~~~liDtpg~~~~~~  100 (219)
                      ...+..+.|.++|++|.|||||+|.|++.......  .+..+    .+..+    .....+   ..+.++||||++....
T Consensus        18 ~k~Gi~f~im~~G~sG~GKttfiNtL~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtpGfGD~id   97 (373)
T COG5019          18 SKKGIDFTIMVVGESGLGKTTFINTLFGTSLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTPGFGDFID   97 (373)
T ss_pred             HhcCCceEEEEecCCCCchhHHHHhhhHhhccCCCCccCcccccCCcceEEEeeeeeeecCCeEEEEEEeccCCcccccc
Confidence            34467899999999999999999999997311111  11111    11111    111112   2689999999987655


Q ss_pred             Ccchh----hhHHHHHHHHhhccC-----------CccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          101 PDVTR----MDWSSFTKGYFLNRE-----------SLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       101 ~~~~~----~~~~~~~~~~~~~~~-----------~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ....-    ....+..+.|+...+           .+|+|+|.+.++ ++.+..+.+.++.+.. .+.+|-|+.|.|...
T Consensus        98 Ns~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~-~vNlIPVI~KaD~lT  176 (373)
T COG5019          98 NSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSK-RVNLIPVIAKADTLT  176 (373)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHHHhc-ccCeeeeeeccccCC
Confidence            43321    111222334433221           268999999987 4677777777776665 689999999999987


Q ss_pred             ccc
Q 027757          165 VAK  167 (219)
Q Consensus       165 ~~~  167 (219)
                      .++
T Consensus       177 ~~E  179 (373)
T COG5019         177 DDE  179 (373)
T ss_pred             HHH
Confidence            643

>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional

Probab=99.34  E-value=1.8e-11  Score=95.76  Aligned_cols=60  Identities=18%  Similarity=0.189  Sum_probs=46.0

Q ss_pred             CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       149 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ...+-++|+||+|+.+.     ...+++.+.+.+.... ...+++.+|+++|.|+++|++||.+..
T Consensus       229 f~~ADIVVLNKiDLl~~-----~~~dle~~~~~lr~ln-p~a~I~~vSA~tGeGld~L~~~L~~~~  288 (290)
T PRK10463        229 FAAASLMLLNKVDLLPY-----LNFDVEKCIACAREVN-PEIEIILISATSGEGMDQWLNWLETQR  288 (290)
T ss_pred             hhcCcEEEEEhHHcCcc-----cHHHHHHHHHHHHhhC-CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence            45677999999999753     1235666666666544 347899999999999999999998743

>KOG0410 consensus Predicted GTP binding protein [General function prediction only]

Probab=99.33  E-value=6.1e-12  Score=97.90  Aligned_cols=158  Identities=20%  Similarity=0.175  Sum_probs=107.2

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCccccccc--CCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTS--KKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~--~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ....+-|.++|.+|+|||||+++|++....+...  .+...|.+....+.++.+.+.||-|+. +..+......|++..+
T Consensus       175 ~~s~pviavVGYTNaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFi-sdLP~~LvaAF~ATLe  253 (410)
T KOG0410|consen  175 GESSPVIAVVGYTNAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFI-SDLPIQLVAAFQATLE  253 (410)
T ss_pred             cCCCceEEEEeecCccHHHHHHHHHhhhcCccchhheeccchhhhccCCCCcEEEEeechhhh-hhCcHHHHHHHHHHHH
Confidence            4556899999999999999999999753222211  122344455566667789999999975 4445555666666655


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhccCCCc-------EEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLGRNNIP-------LTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~p-------~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      ...    .+|+++-|.|++.|...... .++..+.+-++|       ++=|-||+|..+..        .++-       
T Consensus       254 eVa----eadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~--------~e~E-------  314 (410)
T KOG0410|consen  254 EVA----EADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDE--------VEEE-------  314 (410)
T ss_pred             HHh----hcceEEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhcccccccccc--------Cccc-------
Confidence            533    36999999999999876664 344455544433       55567787765431        1100       


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                         ..-.+.+||++|.|++++++.+...+.+
T Consensus       315 ---~n~~v~isaltgdgl~el~~a~~~kv~~  342 (410)
T KOG0410|consen  315 ---KNLDVGISALTGDGLEELLKAEETKVAS  342 (410)
T ss_pred             ---cCCccccccccCccHHHHHHHHHHHhhh
Confidence               0124789999999999999999876654

>KOG0077 consensus Vesicle coat complex COPII, GTPase subunit SAR1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.33  E-value=5.1e-12  Score=89.00  Aligned_cols=156  Identities=21%  Similarity=0.198  Sum_probs=104.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ..-|++++|--|||||||++.|-.. ......|+...|..  ...+ +-.++.+|..|+...          +..++.|+
T Consensus        19 K~gKllFlGLDNAGKTTLLHMLKdD-rl~qhvPTlHPTSE--~l~Ig~m~ftt~DLGGH~qA----------rr~wkdyf   85 (193)
T KOG0077|consen   19 KFGKLLFLGLDNAGKTTLLHMLKDD-RLGQHVPTLHPTSE--ELSIGGMTFTTFDLGGHLQA----------RRVWKDYF   85 (193)
T ss_pred             cCceEEEEeecCCchhhHHHHHccc-cccccCCCcCCChH--HheecCceEEEEccccHHHH----------HHHHHHHH
Confidence            4568999999999999999999886 56666666553332  2233 337889999986311          44567777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH----HHH-HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC-----
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL----DCA-NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY-----  186 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~----~~~-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----  186 (219)
                      ..   +|++++++|+.+...+.+-    +.+ ....-.+.|+++++||+|...+.    .++++.......+...     
T Consensus        86 ~~---v~~iv~lvda~d~er~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~----se~~l~~~l~l~~~t~~~~~v  158 (193)
T KOG0077|consen   86 PQ---VDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAA----SEDELRFHLGLSNFTTGKGKV  158 (193)
T ss_pred             hh---hceeEeeeehhhHHHhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc----cHHHHHHHHHHHHHhcccccc
Confidence            67   8999999999987665542    111 11112689999999999988653    2233332222222211     


Q ss_pred             ------CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          187 ------PHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       187 ------~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                            ..+..+|.||...+.|.-+-|.|+...
T Consensus       159 ~~~~~~~rp~evfmcsi~~~~gy~e~fkwl~qy  191 (193)
T KOG0077|consen  159 NLTDSNVRPLEVFMCSIVRKMGYGEGFKWLSQY  191 (193)
T ss_pred             cccCCCCCeEEEEEEEEEccCccceeeeehhhh
Confidence                  113457899999999988888887654

>KOG0096 consensus GTPase Ran/TC4/GSP1 (nuclear protein transport pathway), small G protein superfamily [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.31  E-value=4e-12  Score=91.47  Aligned_cols=152  Identities=13%  Similarity=0.204  Sum_probs=107.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++++++|..|.||||++++.+...+-..+.++.+...+......+.   ++..|||.|          ++.+--..+.
T Consensus         9 ~~fklvlvGdgg~gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn~g~irf~~wdtag----------qEk~gglrdg   78 (216)
T KOG0096|consen    9 LTFKLVLVGDGGTGKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTNRGQIRFNVWDTAG----------QEKKGGLRDG   78 (216)
T ss_pred             ceEEEEEecCCcccccchhhhhhcccceecccCcceeEEeeeeeecccCcEEEEeeeccc----------ceeecccccc
Confidence            468999999999999999999988877777888888777765444333   456667666          4444445566


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      |+..   ....|+++|++...+....  .+|-+     ..++|+++++||.|.....        .  ....+.-.....
T Consensus        79 yyI~---~qcAiimFdVtsr~t~~n~--~rwhrd~~rv~~NiPiv~cGNKvDi~~r~--------~--k~k~v~~~rkkn  143 (216)
T KOG0096|consen   79 YYIQ---GQCAIIMFDVTSRFTYKNV--PRWHRDLVRVRENIPIVLCGNKVDIKARK--------V--KAKPVSFHRKKN  143 (216)
T ss_pred             cEEe---cceeEEEeeeeehhhhhcc--hHHHHHHHHHhcCCCeeeeccceeccccc--------c--ccccceeeeccc
Confidence            6666   4567999999976655442  22222     2579999999999976542        0  111122222344


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.++++||++..|.+.-|.|+.+..
T Consensus       144 l~y~~iSaksn~NfekPFl~LarKl  168 (216)
T KOG0096|consen  144 LQYYEISAKSNYNFERPFLWLARKL  168 (216)
T ss_pred             ceeEEeecccccccccchHHHhhhh
Confidence            7899999999999999999998754

>cd01858 NGP_1 NGP-1

Probab=99.27  E-value=1.6e-11  Score=88.98  Aligned_cols=57  Identities=33%  Similarity=0.556  Sum_probs=50.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~   95 (219)
                      ...+|+++|.+|+|||||+|+|.+. ....+.+.+++|+....+..+..+.++||||+
T Consensus       101 ~~~~v~~~G~~nvGKStliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~liDtPGi  157 (157)
T cd01858         101 KQISVGFIGYPNVGKSSIINTLRSK-KVCKVAPIPGETKVWQYITLMKRIYLIDCPGV  157 (157)
T ss_pred             cceEEEEEeCCCCChHHHHHHHhcC-CceeeCCCCCeeEeEEEEEcCCCEEEEECcCC
Confidence            3568999999999999999999997 57788899999998887777778999999995

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>KOG2655 consensus Septin family protein (P-loop GTPase) [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.26  E-value=1.3e-10  Score=92.84  Aligned_cols=134  Identities=22%  Similarity=0.246  Sum_probs=84.8

Q ss_pred             CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccccc-----ccCCCCeeEEeeEE--E-----ecCeEEEEeCCCCCCCC
Q 027757           32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELAL-----TSKKPGKTQLINHF--L-----VNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~-----~~~~~~~t~~~~~~--~-----~~~~~~liDtpg~~~~~   99 (219)
                      +...++..+.+.++|++|.|||||+|.|+.......     ....+..+..+...  .     ..-.++++||||+++..
T Consensus        14 ~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD~v   93 (366)
T KOG2655|consen   14 KSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGDAV   93 (366)
T ss_pred             HHHhcCCceEEEEecCCCccHHHHHHHHHhhhccCCcccCCcccCccccceeeeeeeeecCCCeEEeeEEeccCCCcccc
Confidence            344556789999999999999999999998732221     11111111221111  1     12268999999997654


Q ss_pred             CCcch----hhhHHHHHHHHhhccC----------CccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          100 APDVT----RMDWSSFTKGYFLNRE----------SLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       100 ~~~~~----~~~~~~~~~~~~~~~~----------~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      .....    -....+-.+.|+....          .+|+|+|.+.++. +....+.+.++.+.. ++++|-|+-|.|...
T Consensus        94 dns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~-~vNiIPVI~KaD~lT  172 (366)
T KOG2655|consen   94 DNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSK-KVNLIPVIAKADTLT  172 (366)
T ss_pred             cccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHHhc-cccccceeeccccCC
Confidence            43221    1112233344443221          3689999999874 477777766666664 789999999999887


Q ss_pred             cc
Q 027757          165 VA  166 (219)
Q Consensus       165 ~~  166 (219)
                      .+
T Consensus       173 ~~  174 (366)
T KOG2655|consen  173 KD  174 (366)
T ss_pred             HH
Confidence            63

>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]

Probab=99.26  E-value=5.9e-11  Score=103.25  Aligned_cols=117  Identities=15%  Similarity=0.154  Sum_probs=84.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc-ccc---ccc------------CCCCeeEE---eeEEEec-CeEEEEeCCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKK-ELA---LTS------------KKPGKTQL---INHFLVN-KSWYIVDLPGY   95 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-~~~---~~~------------~~~~~t~~---~~~~~~~-~~~~liDtpg~   95 (219)
                      .....+|.|+|+..+|||||..+++... ...   .+.            ...|.|..   +...+.+ ..+.+|||||+
T Consensus         7 ~~~~RNigI~aHidaGKTTltE~lL~~tG~i~k~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGH   86 (697)
T COG0480           7 LERIRNIGIVAHIDAGKTTLTERILFYTGIISKIGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGH   86 (697)
T ss_pred             cccceEEEEEeccCCChHHHHHHHHHHcCCcCCCccccCCCccCCCcHHHHhcCCEEeeeeeEEEEcCceEEEEeCCCCc
Confidence            3556789999999999999999998542 000   010            11123322   2334443 78999999997


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      .++.             ....+..+.+|++|+|+|+..+...+...+++++.+.++|.++++||+|....
T Consensus        87 VDFt-------------~EV~rslrvlDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a  143 (697)
T COG0480          87 VDFT-------------IEVERSLRVLDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGA  143 (697)
T ss_pred             cccH-------------HHHHHHHHhhcceEEEEECCCCeeecHHHHHHHHhhcCCCeEEEEECcccccc
Confidence            5331             22223333389999999999999999999999999999999999999998865

>KOG0458 consensus Elongation factor 1 alpha [Translation, ribosomal structure and biogenesis]

Probab=99.25  E-value=1.5e-10  Score=96.40  Aligned_cols=152  Identities=17%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc-----------------------------ccccccCCCCeeEEeeEEEec--
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKK-----------------------------ELALTSKKPGKTQLINHFLVN--   84 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~-----------------------------~~~~~~~~~~~t~~~~~~~~~--   84 (219)
                      ....+.++++|...+|||||+.+++..-                             +.....+..|.|.++...+.+  
T Consensus       174 ~k~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~  253 (603)
T KOG0458|consen  174 PKDHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESK  253 (603)
T ss_pred             CccceEEEEEeccccchhhhhhHHHHHhcCccHHHHHHHHHHHHhcCCcceeeeEEeccchhhhhcceeEEeeeEEEecC
Confidence            3457889999999999999999988531                             011223344566555444433  


Q ss_pred             -CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-------HHHHHHhccCC-CcEEE
Q 027757           85 -KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-------LDCANWLGRNN-IPLTF  155 (219)
Q Consensus        85 -~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~~~-~p~ii  155 (219)
                       ..++++|+||+..+.             ...+.++..||+.|+|+|++....+..       .+....++..+ ..+++
T Consensus       254 ~~~~tliDaPGhkdFi-------------~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qliv  320 (603)
T KOG0458|consen  254 SKIVTLIDAPGHKDFI-------------PNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIV  320 (603)
T ss_pred             ceeEEEecCCCccccc-------------hhhhccccccceEEEEEECCcchhhhccCCCCchHHHHHHHHHcCcceEEE
Confidence             368999999964332             333445556899999999996433322       23333333333 35899


Q ss_pred             EEEcccccccccCCCchHhHHHHHHHHHhcC-------CCCCCeEEeecCCCCChHH
Q 027757          156 VFTKCDKMKVAKGRRPDENIKSFQQLIRENY-------PHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       156 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~e  205 (219)
                      ++||+|+.+-.     ++.++++...+..++       ...+.++++|+.+|.|+-.
T Consensus       321 aiNKmD~V~Ws-----q~RF~eIk~~l~~fL~~~~gf~es~v~FIPiSGl~GeNL~k  372 (603)
T KOG0458|consen  321 AINKMDLVSWS-----QDRFEEIKNKLSSFLKESCGFKESSVKFIPISGLSGENLIK  372 (603)
T ss_pred             EeecccccCcc-----HHHHHHHHHHHHHHHHHhcCcccCCcceEecccccCCcccc
Confidence            99999987642     345555555554433       2245899999999998743

>KOG1673 consensus Ras GTPases [General function prediction only]

Probab=99.24  E-value=2.1e-11  Score=85.01  Aligned_cols=155  Identities=17%  Similarity=0.211  Sum_probs=97.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      -.+||.++|++..|||||+-..++..+......+.|....-......+   .+.+||..|          ++++..+...
T Consensus        19 Vslkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~~t~IsfSIwdlgG----------~~~~~n~lPi   88 (205)
T KOG1673|consen   19 VSLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIRGTDISFSIWDLGG----------QREFINMLPI   88 (205)
T ss_pred             eEEEEEeecccccCceeeehhhhcchhHHHHHHHhCccceeeEEEecceEEEEEEEecCC----------cHhhhccCce
Confidence            358999999999999999999999865555666666554433333332   356667666          3333333333


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .   .+.+-+++|++|.+++.+...  +.+|..+      ..+| ++|++|.|+.-.-.+ ...+.+....+.+....  
T Consensus        89 a---c~dsvaIlFmFDLt~r~TLnS--i~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~-e~Q~~I~~qar~YAk~m--  159 (205)
T KOG1673|consen   89 A---CKDSVAILFMFDLTRRSTLNS--IKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPP-ELQETISRQARKYAKVM--  159 (205)
T ss_pred             e---ecCcEEEEEEEecCchHHHHH--HHHHHHHHhccCCccce-EEeccchHhhhcCCH-HHHHHHHHHHHHHHHHh--
Confidence            2   233678999999998877643  3455543      2244 678999996421111 11122222222222222  


Q ss_pred             CCCeEEeecCCCCChHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~  211 (219)
                      ..+.|++|+....|++.+|+.+.
T Consensus       160 nAsL~F~Sts~sINv~KIFK~vl  182 (205)
T KOG1673|consen  160 NASLFFCSTSHSINVQKIFKIVL  182 (205)
T ss_pred             CCcEEEeeccccccHHHHHHHHH
Confidence            26889999999999999998764

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=99.24  E-value=2.8e-11  Score=88.74  Aligned_cols=58  Identities=33%  Similarity=0.487  Sum_probs=51.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~   95 (219)
                      ....+++++|.+|+|||||+|+|++. ....+++.+++|+....+..+..+.++||||+
T Consensus       115 ~~~~~~~~vG~pnvGKSslin~l~~~-~~~~~~~~pg~T~~~~~~~~~~~~~l~DtPGi  172 (172)
T cd04178         115 KTSITVGVVGFPNVGKSSLINSLKRS-RACNVGATPGVTKSMQEVHLDKKVKLLDSPGI  172 (172)
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCc-ccceecCCCCeEcceEEEEeCCCEEEEECcCC
Confidence            34579999999999999999999997 56788899999998888877788999999995

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>cd01859 MJ1464 MJ1464

Probab=99.22  E-value=2.6e-10  Score=82.51  Aligned_cols=95  Identities=20%  Similarity=0.264  Sum_probs=69.3

Q ss_pred             HHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          108 WSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       108 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      |+.+.+...+.   +|++++|+|++++....+..+..++...++|+++|+||+|+.+.       .....+. .+...  
T Consensus         2 ~~~~~~~i~~~---aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~~-------~~~~~~~-~~~~~--   68 (156)
T cd01859           2 WKRLVRRIIKE---SDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPK-------EVLEKWK-SIKES--   68 (156)
T ss_pred             HHHHHHHHHhh---CCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCCH-------HHHHHHH-HHHHh--
Confidence            45666777766   89999999999877666666666666668999999999998643       1222222 12111  


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...+++++||+++.|++++++.+.+.+.
T Consensus        69 ~~~~~~~iSa~~~~gi~~L~~~l~~~~~   96 (156)
T cd01859          69 EGIPVVYVSAKERLGTKILRRTIKELAK   96 (156)
T ss_pred             CCCcEEEEEccccccHHHHHHHHHHHHh
Confidence            1257899999999999999999987653

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>KOG1547 consensus Septin CDC10 and related P-loop GTPases [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms; Cytoskeleton]

Probab=99.20  E-value=7.9e-11  Score=88.19  Aligned_cols=139  Identities=21%  Similarity=0.330  Sum_probs=87.6

Q ss_pred             eccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEE--eeEEE----ecCeEEEEeC
Q 027757           26 KSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQL--INHFL----VNKSWYIVDL   92 (219)
Q Consensus        26 ~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~--~~~~~----~~~~~~liDt   92 (219)
                      .+.-+.+.+..+..+.|.++|++|.|||||+|.++... ....+       +.+.++..  +.+..    +.-++.++||
T Consensus        33 ~~Qm~~k~mk~GF~FNIMVVgqSglgkstlinTlf~s~-v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDT  111 (336)
T KOG1547|consen   33 IEQMRKKTMKTGFDFNIMVVGQSGLGKSTLINTLFKSH-VSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDT  111 (336)
T ss_pred             HHHHHHHHHhccCceEEEEEecCCCCchhhHHHHHHHH-HhhccCCCcccCcccceEEEEeeeeeeeecceEEEEEEecC
Confidence            33445566777889999999999999999999998763 22211       22222221  12221    2337899999


Q ss_pred             CCCCCCCCCcc--------hhhhHHHHHHHHhhccC-------CccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEE
Q 027757           93 PGYGFAKAPDV--------TRMDWSSFTKGYFLNRE-------SLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFV  156 (219)
Q Consensus        93 pg~~~~~~~~~--------~~~~~~~~~~~~~~~~~-------~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv  156 (219)
                      ||++++.-...        ..+.|+.+.+..+...+       .+++|+|.+.++- ..+..+.++++.+.+ -+.++-|
T Consensus       112 PGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~-vvNvvPV  190 (336)
T KOG1547|consen  112 PGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTE-VVNVVPV  190 (336)
T ss_pred             CCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHHHhh-hheeeee
Confidence            99986543322        12333333333333211       2579999998873 456666677777665 4678999


Q ss_pred             EEcccccccc
Q 027757          157 FTKCDKMKVA  166 (219)
Q Consensus       157 ~nK~D~~~~~  166 (219)
                      +-|.|-+.-+
T Consensus       191 IakaDtlTle  200 (336)
T KOG1547|consen  191 IAKADTLTLE  200 (336)
T ss_pred             EeecccccHH
Confidence            9999977643

>KOG1954 consensus Endocytosis/signaling protein EHD1 [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.18  E-value=9.8e-10  Score=87.23  Aligned_cols=127  Identities=19%  Similarity=0.228  Sum_probs=88.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEe-------------------------------
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLV-------------------------------   83 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~-------------------------------   83 (219)
                      -...+-|+++|+-..|||||++.|+...+.. .+.+.+++.+.+...+.                               
T Consensus        55 fd~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal~vd~~~pF~gL~~FG~afln  134 (532)
T KOG1954|consen   55 FDAKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNALVVDAKKPFRGLNKFGNAFLN  134 (532)
T ss_pred             cccCceEEEEeccccchhHHHHHHHhCCCCccccCCCCCcceeEEEEecCcccccCCceeeecCCCchhhhhhhHHHHHH
Confidence            3557899999999999999999999986543 34445544443322111                               


Q ss_pred             -------c----CeEEEEeCCCCCCCC-CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCC
Q 027757           84 -------N----KSWYIVDLPGYGFAK-APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNN  150 (219)
Q Consensus        84 -------~----~~~~liDtpg~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~  150 (219)
                             .    ..+.++||||+.... ......-.|......|...   +|.|++++|+..- .+....+++..++...
T Consensus       135 Rf~csqmp~~vLe~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR---~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E  211 (532)
T KOG1954|consen  135 RFMCSQLPNQVLESVTIVDTPGILSGEKQRISRGYDFTGVLEWFAER---VDRIILLFDAHKLDISDEFKRVIDALKGHE  211 (532)
T ss_pred             HHHHhcCChhhhhheeeeccCcccccchhcccccCChHHHHHHHHHh---ccEEEEEechhhccccHHHHHHHHHhhCCc
Confidence                   0    146999999975422 2122223445556666666   8999999999864 3444457888888888


Q ss_pred             CcEEEEEEccccccc
Q 027757          151 IPLTFVFTKCDKMKV  165 (219)
Q Consensus       151 ~p~iiv~nK~D~~~~  165 (219)
                      -.+-+|+||.|..+.
T Consensus       212 dkiRVVLNKADqVdt  226 (532)
T KOG1954|consen  212 DKIRVVLNKADQVDT  226 (532)
T ss_pred             ceeEEEeccccccCH
Confidence            889999999999875

>PRK09601 GTP-binding protein YchF; Reviewed

Probab=99.17  E-value=2e-10  Score=92.85  Aligned_cols=85  Identities=24%  Similarity=0.258  Sum_probs=62.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec------------------CeEEEEeCCCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN------------------KSWYIVDLPGYGFAK   99 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpg~~~~~   99 (219)
                      ++|+|+|.||+|||||+|+|++..  ....+.+++|.++.  .....                  ..+.++|+||+....
T Consensus         3 ~~vgIVG~PNvGKSTLfnaLt~~~--~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a   80 (364)
T PRK09601          3 LKCGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGA   80 (364)
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCC
Confidence            689999999999999999999974  67777888876543  22221                  248999999986322


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS  132 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  132 (219)
                      ..  +    +.+...++...+.+|++++|+|+.
T Consensus        81 ~~--g----~glg~~fL~~i~~aD~li~VVd~f  107 (364)
T PRK09601         81 SK--G----EGLGNQFLANIREVDAIVHVVRCF  107 (364)
T ss_pred             Ch--H----HHHHHHHHHHHHhCCEEEEEEeCC
Confidence            11  1    234456666667799999999986

>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]

Probab=99.17  E-value=4.9e-10  Score=86.41  Aligned_cols=148  Identities=17%  Similarity=0.214  Sum_probs=96.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc--------------ccccccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK--------------ELALTSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      ...+|..+|....|||||.-+++..-              +.+......+.|...   .+...+..+-.+|+||+     
T Consensus        11 phVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGH-----   85 (394)
T COG0050          11 PHVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGH-----   85 (394)
T ss_pred             CeeEEEEeccccCchhhHHHHHHHHHHhhccccccchhhhccCchHhhcCceeccceeEEecCCceEEeccCCCh-----
Confidence            46789999999999999999888541              011222333444433   33344567899999996     


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccC-CCchHhHHHH
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKG-RRPDENIKSF  178 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~-~~~~~~~~~~  178 (219)
                              ..+.+..+.++.++|+.|+|+.+.++...+..+.+-..++...| +++++||+|+.++++. +..+.+..++
T Consensus        86 --------aDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd~ellelVemEvreL  157 (394)
T COG0050          86 --------ADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDDEELLELVEMEVREL  157 (394)
T ss_pred             --------HHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhhhhhcCCcEEEEEEecccccCcHHHHHHHHHHHHHH
Confidence                    34445555566668999999999998888887777777777775 7788999999874321 2222222222


Q ss_pred             HHHHHhcCCCCCCeEEeecCC
Q 027757          179 QQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      +..+. +-+...|++.-|+..
T Consensus       158 Ls~y~-f~gd~~Pii~gSal~  177 (394)
T COG0050         158 LSEYG-FPGDDTPIIRGSALK  177 (394)
T ss_pred             HHHcC-CCCCCcceeechhhh
Confidence            22221 112357787777765

>cd01900 YchF YchF subfamily

Probab=99.14  E-value=1.7e-10  Score=90.30  Aligned_cols=83  Identities=23%  Similarity=0.253  Sum_probs=58.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEecC------------------eEEEEeCCCCCCCCCC
Q 027757           42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVNK------------------SWYIVDLPGYGFAKAP  101 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~~------------------~~~liDtpg~~~~~~~  101 (219)
                      |+|+|.+|+|||||+|+|++..  ....+.+++|.....  .....                  .+.++|+||+......
T Consensus         1 igivG~PN~GKSTLfn~Lt~~~--~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~   78 (274)
T cd01900           1 IGIVGLPNVGKSTLFNALTKAG--AEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASK   78 (274)
T ss_pred             CeEeCCCCCcHHHHHHHHhCCC--CccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCch
Confidence            5799999999999999999974  367777887765432  22221                  4899999998633221


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDAS  132 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  132 (219)
                        +    +.+...++...+.+|++++|+|+.
T Consensus        79 --~----~glg~~fL~~i~~~D~li~VV~~f  103 (274)
T cd01900          79 --G----EGLGNKFLSHIREVDAIAHVVRCF  103 (274)
T ss_pred             --h----hHHHHHHHHHHHhCCEEEEEEeCc
Confidence              1    234445566666699999999975

YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=99.13  E-value=1.1e-10  Score=95.49  Aligned_cols=122  Identities=20%  Similarity=0.235  Sum_probs=81.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcc----cccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKE----LALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~----~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+++++|.+|+|||||+|+|++...    ...+++.+++|.....+..+..+.++||||+.....-.   .....-...+
T Consensus       155 ~~v~~vG~~nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~~~~~~~~~l~DtPG~~~~~~~~---~~l~~~~l~~  231 (360)
T TIGR03597       155 KDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLDDGHSLYDTPGIINSHQMA---HYLDKKDLKY  231 (360)
T ss_pred             CeEEEECCCCCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEEEEeCCCCEEEECCCCCChhHhh---hhcCHHHHhh
Confidence            5899999999999999999998532    34678889999998888877778899999986431100   0000111112


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      +...+......+.++..+......+..+.++...+..+.+..++.+...
T Consensus       232 ~~~~~~i~~~~~~l~~~q~~~~ggl~~~d~~~~~~~~~~~~~~~~~~~h  280 (360)
T TIGR03597       232 ITPKKEIKPKTYQLNPNQTLFLGGLARFDYLKGEKTSFTFYVSNELNIH  280 (360)
T ss_pred             cCCCCccCceEEEeCCCCEEEEceEEEEEEecCCceEEEEEccCCceeE
Confidence            3334446778888888765444444444555555667777777776543

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=99.12  E-value=2.1e-10  Score=81.57  Aligned_cols=55  Identities=42%  Similarity=0.593  Sum_probs=47.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~   96 (219)
                      +++++|.+|+|||||+|++++.. ....+..++++++...+..+..+.++||||+.
T Consensus        85 ~~~~~G~~~vGKstlin~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~  139 (141)
T cd01857          85 TIGLVGYPNVGKSSLINALVGKK-KVSVSATPGKTKHFQTIFLTPTITLCDCPGLV  139 (141)
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-ceeeCCCCCcccceEEEEeCCCEEEEECCCcC
Confidence            89999999999999999999974 44677778888888777777789999999974

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01858 NGP_1 NGP-1

Probab=99.10  E-value=8.2e-10  Score=79.95  Aligned_cols=87  Identities=21%  Similarity=0.303  Sum_probs=64.9

Q ss_pred             cCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          119 RESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      .+.+|++++|+|+.++....+..+.+.+..  .++|+++|+||+|+.+.       +....+...+...+.  ..++.+|
T Consensus         6 l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~-------~~~~~~~~~~~~~~~--~~~~~iS   76 (157)
T cd01858           6 IDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT-------WVTARWVKILSKEYP--TIAFHAS   76 (157)
T ss_pred             hhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH-------HHHHHHHHHHhcCCc--EEEEEee
Confidence            344899999999999866666666666654  34899999999999753       334556666654332  2258899


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~  214 (219)
                      |+.+.|++++.+++.+..
T Consensus        77 a~~~~~~~~L~~~l~~~~   94 (157)
T cd01858          77 INNPFGKGSLIQLLRQFS   94 (157)
T ss_pred             ccccccHHHHHHHHHHHH
Confidence            999999999999998764

Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.

>cd01855 YqeH YqeH

Probab=99.09  E-value=2.5e-09  Score=79.84  Aligned_cols=98  Identities=18%  Similarity=0.102  Sum_probs=64.9

Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH--HhcC
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI--RENY  186 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~--~~~~  186 (219)
                      .++...++..   +|++++|+|++++.......+  +....++|+++|+||+|+.+.+   ...+..+.+...+  ....
T Consensus        25 ~~~l~~~~~~---ad~il~VvD~~~~~~~~~~~l--~~~~~~~~~ilV~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~   96 (190)
T cd01855          25 LNLLSSISPK---KALVVHVVDIFDFPGSLIPRL--RLFGGNNPVILVGNKIDLLPKD---KNLVRIKNWLRAKAAAGLG   96 (190)
T ss_pred             HHHHHhcccC---CcEEEEEEECccCCCccchhH--HHhcCCCcEEEEEEchhcCCCC---CCHHHHHHHHHHHHHhhcC
Confidence            5566666666   899999999998654433333  2233578999999999997532   1222333333111  1111


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ....+++++||+++.|++++++++.+.+
T Consensus        97 ~~~~~i~~vSA~~~~gi~eL~~~l~~~l  124 (190)
T cd01855          97 LKPKDVILISAKKGWGVEELINAIKKLA  124 (190)
T ss_pred             CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence            1123689999999999999999998865

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>KOG1486 consensus GTP-binding protein DRG2 (ODN superfamily) [Signal transduction mechanisms]

Probab=99.07  E-value=3.2e-09  Score=80.31  Aligned_cols=93  Identities=19%  Similarity=0.213  Sum_probs=62.4

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      .+.+.-||+++|.|.+|||||+..++...  ........+|..  +.....+ ..+.++|.||+........|+-     
T Consensus        58 ~KsGdaRValIGfPSVGKStlLs~iT~T~--SeaA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAsqgkGRG-----  130 (364)
T KOG1486|consen   58 LKSGDARVALIGFPSVGKSTLLSKITSTH--SEAASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGASQGKGRG-----  130 (364)
T ss_pred             eccCCeEEEEecCCCccHHHHHHHhhcch--hhhhceeeeEEEeecceEEecCceEEEecCcccccccccCCCCC-----
Confidence            34567899999999999999999999863  444444445443  3333333 3799999999865433222211     


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCC
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPP  135 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~  135 (219)
                       .....-++.+|++++|+|++...
T Consensus       131 -RQviavArtaDlilMvLDatk~e  153 (364)
T KOG1486|consen  131 -RQVIAVARTADLILMVLDATKSE  153 (364)
T ss_pred             -ceEEEEeecccEEEEEecCCcch
Confidence             22333455689999999999643

>KOG4423 consensus GTP-binding protein-like, RAS superfamily [Signal transduction mechanisms]

Probab=99.07  E-value=8.8e-12  Score=89.47  Aligned_cols=160  Identities=16%  Similarity=0.177  Sum_probs=105.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC-CCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG-YGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg-~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ....++.|+|..|+|||+++.+.+...+...+..+.+........       -||... +....|+-.||+.+-.+...|
T Consensus        23 ~hL~k~lVig~~~vgkts~i~ryv~~nfs~~yRAtIgvdfalkVl-------~wdd~t~vRlqLwdIagQerfg~mtrVy   95 (229)
T KOG4423|consen   23 EHLFKVLVIGDLGVGKTSSIKRYVHQNFSYHYRATIGVDFALKVL-------QWDDKTIVRLQLWDIAGQERFGNMTRVY   95 (229)
T ss_pred             hhhhhhheeeeccccchhHHHHHHHHHHHHHHHHHHhHHHHHHHh-------ccChHHHHHHHHhcchhhhhhcceEEEE
Confidence            456899999999999999999999875555454444433321111       122222 122344455577777788888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc----------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR----------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~----------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      ++.   +.+..+|||+++..++...  .+|...          .-.|+++..||||......     .+.-+....+.. 
T Consensus        96 yke---a~~~~iVfdvt~s~tfe~~--skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~-----~~~~~~~d~f~k-  164 (229)
T KOG4423|consen   96 YKE---AHGAFIVFDVTRSLTFEPV--SKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAK-----NEATRQFDNFKK-  164 (229)
T ss_pred             ecC---CcceEEEEEccccccccHH--HHHHHhccCcccCCCCCcchheeccchhccChHhh-----hhhHHHHHHHHh-
Confidence            888   8999999999997776542  344442          3368899999999876421     111122222221 


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .+...-++++|+|...+++|.-+.+.+..
T Consensus       165 engf~gwtets~Kenkni~Ea~r~lVe~~  193 (229)
T KOG4423|consen  165 ENGFEGWTETSAKENKNIPEAQRELVEKI  193 (229)
T ss_pred             ccCccceeeeccccccChhHHHHHHHHHH
Confidence            12235789999999999999999887743

>KOG3886 consensus GTP-binding protein [Signal transduction mechanisms]

Probab=99.06  E-value=2.5e-10  Score=85.03  Aligned_cols=151  Identities=19%  Similarity=0.158  Sum_probs=91.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..||+++|.+|+||||+-..++.+ ..+.....+|-|.++.+...    +--+.+||+.|-.     ...+..+.+-.+.
T Consensus         4 ~kKvlLMGrsGsGKsSmrsiiF~n-y~a~D~~rlg~tidveHsh~RflGnl~LnlwDcGgqe-----~fmen~~~~q~d~   77 (295)
T KOG3886|consen    4 KKKVLLMGRSGSGKSSMRSIIFAN-YIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQE-----EFMENYLSSQEDN   77 (295)
T ss_pred             cceEEEeccCCCCccccchhhhhh-hhhhhhhccCCcceeeehhhhhhhhheeehhccCCcH-----HHHHHHHhhcchh
Confidence            568999999999999999999886 66777777777766655443    3357789988731     0000011111223


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHH----HHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCA----NWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      -++.   ++++++|+|++..+-..+....    +.+.+  +...+++.++|+|+.....++..-.........+..  ..
T Consensus        78 iF~n---V~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r~~if~~r~~~l~~~s~--~~  152 (295)
T KOG3886|consen   78 IFRN---VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDARELIFQRRKEDLRRLSR--PL  152 (295)
T ss_pred             hhee---heeeeeeeeccchhhhhhHHHHHHHHHHHHhcCCcceEEEEEeechhcccchHHHHHHHHHHHHHHhcc--cc
Confidence            3334   7899999999986655554322    22222  566799999999998654433222222222222222  22


Q ss_pred             CCCeEEeecCCC
Q 027757          189 HPPWIMTSSVTG  200 (219)
Q Consensus       189 ~~~~~~~Sa~~~  200 (219)
                      .+.+|++|.-..
T Consensus       153 ~~~~f~TsiwDe  164 (295)
T KOG3886|consen  153 ECKCFPTSIWDE  164 (295)
T ss_pred             cccccccchhhH
Confidence            356677765543

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=99.06  E-value=8.1e-10  Score=87.71  Aligned_cols=62  Identities=35%  Similarity=0.497  Sum_probs=53.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      ...++++++|.+|+|||||+|+|.+. ....+.+.+++|+....+..+..+.++||||+....
T Consensus       119 ~~~~~~~~~G~pnvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPGi~~~~  180 (287)
T PRK09563        119 PRAIRAMIIGIPNVGKSTLINRLAGK-KIAKTGNRPGVTKAQQWIKLGKGLELLDTPGILWPK  180 (287)
T ss_pred             cCceEEEEECCCCCCHHHHHHHHhcC-CccccCCCCCeEEEEEEEEeCCcEEEEECCCcCCCC
Confidence            34578999999999999999999997 466788899999998888888889999999986443

>COG1161 Predicted GTPases [General function prediction only]

Probab=99.05  E-value=5.5e-10  Score=89.80  Aligned_cols=60  Identities=38%  Similarity=0.594  Sum_probs=54.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      ..+++++|-+|+|||||||+|.++ ....+++.+|+|.....+.....+.++||||+....
T Consensus       132 ~~~v~vvG~PNVGKSslIN~L~~k-~~~~~s~~PG~Tk~~q~i~~~~~i~LlDtPGii~~~  191 (322)
T COG1161         132 KIRVGVVGYPNVGKSTLINRLLGK-KVAKTSNRPGTTKGIQWIKLDDGIYLLDTPGIIPPK  191 (322)
T ss_pred             ceEEEEEcCCCCcHHHHHHHHhcc-cceeeCCCCceecceEEEEcCCCeEEecCCCcCCCC
Confidence            478999999999999999999998 578999999999999999999999999999986543

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.05  E-value=7.1e-10  Score=80.11  Aligned_cols=58  Identities=31%  Similarity=0.450  Sum_probs=49.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~   95 (219)
                      ....+++++|.+|+|||||+|++.+. ......+.+++|........+..+.++||||+
T Consensus        98 ~~~~~~~~~G~~~~GKstlin~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~liDtPG~  155 (155)
T cd01849          98 KKSITVGVIGYPNVGKSSVINALLNK-LKLKVGNVPGTTTSQQEVKLDNKIKLLDTPGI  155 (155)
T ss_pred             ccCcEEEEEccCCCCHHHHHHHHHcc-ccccccCCCCcccceEEEEecCCEEEEECCCC
Confidence            34688999999999999999999997 45567778888888877777778999999995

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>COG5258 GTPBP1 GTPase [General function prediction only]

Probab=99.04  E-value=1.2e-09  Score=87.15  Aligned_cols=166  Identities=22%  Similarity=0.151  Sum_probs=105.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-c-----------cccCCCCeeEEeeE--EEe-------------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKEL-A-----------LTSKKPGKTQLINH--FLV-------------------   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-~-----------~~~~~~~~t~~~~~--~~~-------------------   83 (219)
                      .....|+.+|..++|||||+-.|+...-. .           ...-..+.+.++..  +-.                   
T Consensus       115 ~~hv~Vg~aGhVdhGKSTlvG~LvtG~~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~  194 (527)
T COG5258         115 PEHVLVGVAGHVDHGKSTLVGVLVTGRLDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAA  194 (527)
T ss_pred             CceEEEEEeccccCCcceEEEEEEecCCCCCCcchhhhhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhH
Confidence            44678999999999999999888754200 0           00000111111110  000                   


Q ss_pred             -----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEE
Q 027757           84 -----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFT  158 (219)
Q Consensus        84 -----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n  158 (219)
                           +.-+.++||.|+.  .|        -...-.=+- -+..|..++++.++++.+...++.+..+...+.|+++++|
T Consensus       195 vv~~aDklVsfVDtvGHE--pw--------LrTtirGL~-gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvT  263 (527)
T COG5258         195 VVKRADKLVSFVDTVGHE--PW--------LRTTIRGLL-GQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVT  263 (527)
T ss_pred             hhhhcccEEEEEecCCcc--HH--------HHHHHHHHh-ccccceEEEEEEccCCcchhhhHhhhhhhhhcCCEEEEEE
Confidence                 1235788998863  12        111111111 1237999999999999999988888888889999999999


Q ss_pred             cccccccccCCCchHhHHHHHHHHHh-------------------cCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQLIRE-------------------NYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      |+|+.+++-.....+++.++++..+.                   ....-.|+|.+|+.+|.|++-|.+.+..+
T Consensus       264 K~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~L  337 (527)
T COG5258         264 KIDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLLL  337 (527)
T ss_pred             ecccCcHHHHHHHHHHHHHHHHHhcccceeeeccchhHHhhhhhhcCCceEEEEEEecccCccHHHHHHHHHhC
Confidence            99998865443334444444443221                   11124689999999999998887777654

>cd01855 YqeH YqeH

Probab=99.04  E-value=5.3e-10  Score=83.51  Aligned_cols=57  Identities=37%  Similarity=0.520  Sum_probs=47.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-------cccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE-------LALTSKKPGKTQLINHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~-------~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~   95 (219)
                      ..+++++|.+|+|||||+|+|.+...       ....+..+++|+.......+..+.++||||+
T Consensus       127 ~~~~~~~G~~nvGKStliN~l~~~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~~~DtPG~  190 (190)
T cd01855         127 GGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGNGKKLYDTPGI  190 (190)
T ss_pred             CCcEEEEcCCCCCHHHHHHHHHHhcccccccccccccCCCCCeeeeeEEEecCCCCEEEeCcCC
Confidence            36899999999999999999998642       2356677899999888888778899999995

YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=99.02  E-value=1.6e-09  Score=85.51  Aligned_cols=60  Identities=32%  Similarity=0.443  Sum_probs=52.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA   98 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~   98 (219)
                      ...+++++|.+|+|||||+|+|.+. ....+.+.+++|+....+..+..+.++||||+...
T Consensus       117 ~~~~~~~vG~~nvGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtPG~~~~  176 (276)
T TIGR03596       117 RPIRAMIVGIPNVGKSTLINRLAGK-KVAKVGNRPGVTKGQQWIKLSDGLELLDTPGILWP  176 (276)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeecceEEEEeCCCEEEEECCCcccC
Confidence            4578999999999999999999987 46677888999998888877778999999998544

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>cd01849 YlqF_related_GTPase YlqF-related GTPases

Probab=99.02  E-value=3.9e-09  Score=76.25  Aligned_cols=82  Identities=18%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             cEEEEEEeCCCCCCcccHHHH-HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCC
Q 027757          123 VGVLLLIDASVPPQKIDLDCA-NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL  201 (219)
Q Consensus       123 d~vi~v~d~~~~~~~~~~~~~-~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~  201 (219)
                      |.+++|+|+.++.+.....+. ..+...++|+++|+||+|+.+.       +...++...+....  ..+++.+||+++.
T Consensus         1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~-------~~~~~~~~~~~~~~--~~~ii~vSa~~~~   71 (155)
T cd01849           1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPK-------EVLRKWLAYLRHSY--PTIPFKISATNGQ   71 (155)
T ss_pred             CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCH-------HHHHHHHHHHHhhC--CceEEEEeccCCc
Confidence            679999999988776665555 4666678999999999999653       23444444443332  2568999999999


Q ss_pred             ChHHHHHHHHHH
Q 027757          202 GRDELLLHMSQL  213 (219)
Q Consensus       202 ~v~el~~~l~~~  213 (219)
                      |++++.+.+.+.
T Consensus        72 gi~~L~~~i~~~   83 (155)
T cd01849          72 GIEKKESAFTKQ   83 (155)
T ss_pred             ChhhHHHHHHHH
Confidence            999999988664

These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.

>KOG0448 consensus Mitofusin 1 GTPase, involved in mitochondrila biogenesis [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=1.1e-08  Score=86.89  Aligned_cols=148  Identities=20%  Similarity=0.253  Sum_probs=91.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc-----------C---------CCCe-------e-----------E--
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS-----------K---------KPGK-------T-----------Q--   76 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-----------~---------~~~~-------t-----------~--   76 (219)
                      ...-||+|.|..++||||++|+++..+..+...           .         +++.       +           .  
T Consensus       107 r~~mKV~ifGrts~GKSt~iNAmL~~klLP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~~~  186 (749)
T KOG0448|consen  107 RRHMKVAIFGRTSAGKSTVINAMLHKKLLPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDKDL  186 (749)
T ss_pred             hcccEEEEeCCCCCcHHHHHHHHHHHhhCcccccccceeeeeecccCCcceeeccCCCcccccHHHHhHHHHhcCccccc
Confidence            345799999999999999999999764221100           0         0000       0           0  


Q ss_pred             ----EeeEEEe-------cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHH
Q 027757           77 ----LINHFLV-------NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANW  145 (219)
Q Consensus        77 ----~~~~~~~-------~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~  145 (219)
                          -...++.       .+.+.++|.||++...-       ..+..+.+...   +|++|+|..+.+-.+...+.++..
T Consensus       187 ~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se-------~tswid~~cld---aDVfVlV~NaEntlt~sek~Ff~~  256 (749)
T KOG0448|consen  187 GAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSE-------LTSWIDSFCLD---ADVFVLVVNAENTLTLSEKQFFHK  256 (749)
T ss_pred             CcceEEEEEecCccchhhhccceeccCCCCCCchh-------hhHHHHHHhhc---CCeEEEEecCccHhHHHHHHHHHH
Confidence                0001111       13679999999863311       12233444444   899999999998888777777776


Q ss_pred             hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC-----CCCeEEeecCC
Q 027757          146 LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-----HPPWIMTSSVT  199 (219)
Q Consensus       146 ~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~  199 (219)
                      ..+.+..++|+.||+|....+.     +..+....++......     .-.++++|++.
T Consensus       257 vs~~KpniFIlnnkwDasase~-----ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e  310 (749)
T KOG0448|consen  257 VSEEKPNIFILNNKWDASASEP-----ECKEDVLKQIHELSVVTEKEAADRVFFVSAKE  310 (749)
T ss_pred             hhccCCcEEEEechhhhhcccH-----HHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence            6667778999999999876532     3344444443322111     24689999654

>KOG3905 consensus Dynein light intermediate chain [Cell motility]

Probab=98.97  E-value=1.7e-08  Score=79.09  Aligned_cols=161  Identities=23%  Similarity=0.230  Sum_probs=94.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC-----eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK-----SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      -..|+++|..|+|||||+.+|-+..   ...+..+..+-.-.+....     ++..|-..|          ...-..+.+
T Consensus        52 gk~VlvlGdn~sGKtsLi~klqg~e---~~KkgsgLeY~yl~V~de~RDd~tr~~VWiLDG----------d~~h~~LLk  118 (473)
T KOG3905|consen   52 GKNVLVLGDNGSGKTSLISKLQGSE---TVKKGSGLEYLYLHVHDEDRDDLTRCNVWILDG----------DLYHKGLLK  118 (473)
T ss_pred             CCeEEEEccCCCchhHHHHHhhccc---ccCCCCCcceEEEecccccchhhhhcceEEecC----------chhhhhHHh
Confidence            4589999999999999999999973   2222223222111111111     233333333          111123333


Q ss_pred             HHhhccCCc-cEEEEEEeCCCCCCcccHHHHHHhc---------------------------------------------
Q 027757          114 GYFLNRESL-VGVLLLIDASVPPQKIDLDCANWLG---------------------------------------------  147 (219)
Q Consensus       114 ~~~~~~~~~-d~vi~v~d~~~~~~~~~~~~~~~~~---------------------------------------------  147 (219)
                      ..+..-.-+ -.+|++.|+++|++..+ .+.+|..                                             
T Consensus       119 ~al~ats~aetlviltasms~Pw~~le-sLqkWa~Vl~ehidkl~i~~ee~ka~rqk~~k~wQeYvep~e~~pgsp~~r~  197 (473)
T KOG3905|consen  119 FALPATSLAETLVILTASMSNPWTLLE-SLQKWASVLREHIDKLKIPPEEMKAGRQKLEKDWQEYVEPGEDQPGSPQRRT  197 (473)
T ss_pred             hcccccCccceEEEEEEecCCcHHHHH-HHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcCccccCCCCccccc
Confidence            333332122 36889999999876543 1222322                                             


Q ss_pred             ----------------------cCCCcEEEEEEccccccc--ccCCCchHhHHHHHHHHHhcCC-CCCCeEEeecCCCCC
Q 027757          148 ----------------------RNNIPLTFVFTKCDKMKV--AKGRRPDENIKSFQQLIRENYP-HHPPWIMTSSVTGLG  202 (219)
Q Consensus       148 ----------------------~~~~p~iiv~nK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~  202 (219)
                                            ..++|+++|++|||....  .+-+..++.++-+..+++.++. .....|++|+++..|
T Consensus       198 t~~~~~~de~~llPL~~dtLt~NlGi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KN  277 (473)
T KOG3905|consen  198 TVVGSSADEHVLLPLGQDTLTHNLGIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKN  277 (473)
T ss_pred             ccccCccccccccccCCcchhhcCCCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccc
Confidence                                  145899999999997321  1223344555544455554432 235789999999999


Q ss_pred             hHHHHHHHHHH
Q 027757          203 RDELLLHMSQL  213 (219)
Q Consensus       203 v~el~~~l~~~  213 (219)
                      ++-|+.+|.+.
T Consensus       278 idllyKYivhr  288 (473)
T KOG3905|consen  278 IDLLYKYIVHR  288 (473)
T ss_pred             hHHHHHHHHHH
Confidence            99999999764

>cd01856 YlqF YlqF

Probab=98.97  E-value=2.7e-09  Score=78.40  Aligned_cols=57  Identities=39%  Similarity=0.556  Sum_probs=49.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~   95 (219)
                      ..++++++|.+|+|||||+|++++.. ...+.+.+++|.....+..+..+.++||||+
T Consensus       114 ~~~~~~~~G~~~vGKstlin~l~~~~-~~~~~~~~~~T~~~~~~~~~~~~~~iDtpG~  170 (171)
T cd01856         114 RGIRAMVVGIPNVGKSTLINRLRGKK-VAKVGNKPGVTKGIQWIKISPGIYLLDTPGI  170 (171)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC-ceeecCCCCEEeeeEEEEecCCEEEEECCCC
Confidence            34789999999999999999999974 4467788888988887777778999999996

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>cd01856 YlqF YlqF

Probab=98.96  E-value=1.7e-08  Score=74.10  Aligned_cols=87  Identities=20%  Similarity=0.209  Sum_probs=62.0

Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      ....+.+|.+++|+|++++....+..+...+.  +.|.++|+||+|+.+.       .....+.+.+...   ..+++.+
T Consensus        14 ~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~~--~k~~ilVlNK~Dl~~~-------~~~~~~~~~~~~~---~~~vi~i   81 (171)
T cd01856          14 KEKLKLVDLVIEVRDARIPLSSRNPLLEKILG--NKPRIIVLNKADLADP-------KKTKKWLKYFESK---GEKVLFV   81 (171)
T ss_pred             HHHHhhCCEEEEEeeccCccCcCChhhHhHhc--CCCEEEEEehhhcCCh-------HHHHHHHHHHHhc---CCeEEEE
Confidence            34445589999999999877665555555443  5799999999998643       2233333333321   1468999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q 027757          196 SSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~  214 (219)
                      ||+++.|++++.+.+.+..
T Consensus        82 Sa~~~~gi~~L~~~l~~~l  100 (171)
T cd01856          82 NAKSGKGVKKLLKAAKKLL  100 (171)
T ss_pred             ECCCcccHHHHHHHHHHHH
Confidence            9999999999999998763

Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.

>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis

Probab=98.95  E-value=4.1e-10  Score=80.83  Aligned_cols=59  Identities=36%  Similarity=0.467  Sum_probs=39.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccc------cccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELA------LTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA   98 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~   98 (219)
                      ..++++|++|+|||||+|+|.+.....      ....-..||++...+..+....++||||+...
T Consensus        36 k~~vl~G~SGvGKSSLiN~L~~~~~~~t~~is~~~~rGkHTTt~~~l~~l~~g~~iIDTPGf~~~  100 (161)
T PF03193_consen   36 KTSVLLGQSGVGKSSLINALLPEAKQKTGEISEKTGRGKHTTTHRELFPLPDGGYIIDTPGFRSF  100 (161)
T ss_dssp             SEEEEECSTTSSHHHHHHHHHTSS----S--------------SEEEEEETTSEEEECSHHHHT-
T ss_pred             CEEEEECCCCCCHHHHHHHHHhhcchhhhhhhcccCCCcccCCCeeEEecCCCcEEEECCCCCcc
Confidence            679999999999999999999973221      11233346666677777778899999998643

RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.95  E-value=3.2e-09  Score=86.10  Aligned_cols=58  Identities=29%  Similarity=0.302  Sum_probs=42.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      .++++|++|+|||||+|+|++.. ...+...+       .||+....+..+....++||||+....
T Consensus       207 i~~~vG~sgVGKSTLiN~Ll~~~-~~~t~~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~  271 (347)
T PRK12288        207 ISIFVGQSGVGKSSLINALLPEA-EILVGDVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFG  271 (347)
T ss_pred             CEEEECCCCCCHHHHHHHhcccc-ceeeccccCcCCCCcCceeeEEEEEecCCCEEEECCCCCccc
Confidence            48999999999999999999873 33333332       366676666666556799999986543

>cd01857 HSR1_MMR1 HSR1/MMR1

Probab=98.95  E-value=5.8e-09  Score=74.12  Aligned_cols=75  Identities=15%  Similarity=0.095  Sum_probs=56.0

Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      +..+.+|++++|+|+.++.+..+..+.+++...  ++|+++|+||+|+.+.       +...++.+.+....   .++++
T Consensus         7 ~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~~-------~~~~~~~~~~~~~~---~~ii~   76 (141)
T cd01857           7 RVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTE-------EQRKAWAEYFKKEG---IVVVF   76 (141)
T ss_pred             HHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCCH-------HHHHHHHHHHHhcC---CeEEE
Confidence            334458999999999998887777777887765  8999999999998653       23444555554332   57899


Q ss_pred             eecCCCC
Q 027757          195 TSSVTGL  201 (219)
Q Consensus       195 ~Sa~~~~  201 (219)
                      +||+++.
T Consensus        77 iSa~~~~   83 (141)
T cd01857          77 FSALKEN   83 (141)
T ss_pred             EEecCCC
Confidence            9999875

Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.

>cd01859 MJ1464 MJ1464

Probab=98.93  E-value=4.5e-09  Score=75.94  Aligned_cols=57  Identities=37%  Similarity=0.522  Sum_probs=48.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~   95 (219)
                      ...+++++|.+|+|||||+|++.+. ....+.+.+++|........+..+.++||||+
T Consensus       100 ~~~~~~~ig~~~~Gkssl~~~l~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~DtpGi  156 (156)
T cd01859         100 KEGKVGVVGYPNVGKSSIINALKGR-HSASTSPSPGYTKGEQLVKITSKIYLLDTPGV  156 (156)
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCC-CccccCCCCCeeeeeEEEEcCCCEEEEECcCC
Confidence            4578999999999999999999986 46677888888877766666778999999995

This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.92  E-value=3.6e-09  Score=82.01  Aligned_cols=95  Identities=20%  Similarity=0.168  Sum_probs=64.8

Q ss_pred             hhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          106 MDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       106 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      ++|+.+.+.++++   +|.+++|+|+.++. +.... +.+..+...++|+++|+||+|+.+..      ....++.+.+.
T Consensus        24 eR~~~L~r~~~~n---~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~~~------~~~~~~~~~~~   94 (245)
T TIGR00157        24 ERKNELTRPIVAN---IDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLDDE------DMEKEQLDIYR   94 (245)
T ss_pred             cccceEECccccc---CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCCCH------HHHHHHHHHHH
Confidence            4445556667777   89999999999876 43322 22223334789999999999996532      11123334443


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      .   ...+++++||+++.|++++++.+.+
T Consensus        95 ~---~g~~v~~~SAktg~gi~eLf~~l~~  120 (245)
T TIGR00157        95 N---IGYQVLMTSSKNQDGLKELIEALQN  120 (245)
T ss_pred             H---CCCeEEEEecCCchhHHHHHhhhcC
Confidence            2   2268999999999999999988753

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>KOG0460 consensus Mitochondrial translation elongation factor Tu [Translation, ribosomal structure and biogenesis]

Probab=98.92  E-value=8.2e-09  Score=81.21  Aligned_cols=149  Identities=15%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--------------ccccccCCCCeeEEe---eEEEecCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK--------------ELALTSKKPGKTQLI---NHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~--------------~~~~~~~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~   99 (219)
                      ....+|.-+|....|||||..+++.-.              +.+......|.|...   .+..-..++-=+||||+    
T Consensus        52 KPHvNVGTIGHVDHGKTTLTaAITkila~~g~A~~~kydeID~APEEkaRGITIn~aHveYeTa~RhYaH~DCPGH----  127 (449)
T KOG0460|consen   52 KPHVNVGTIGHVDHGKTTLTAAITKILAEKGGAKFKKYDEIDKAPEEKARGITINAAHVEYETAKRHYAHTDCPGH----  127 (449)
T ss_pred             CCcccccccccccCCchhHHHHHHHHHHhccccccccHhhhhcChhhhhccceEeeeeeeeeccccccccCCCCch----
Confidence            346789999999999999999888531              112222334444433   33333456778999996    


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccc-cccCCCchHhHHH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMK-VAKGRRPDENIKS  177 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~-~~~~~~~~~~~~~  177 (219)
                               ..+.+..+.+..+.|+.|+|+.++++...+.++.+-..++-.++ +++.+||.|+.+ ++..+..+.++.+
T Consensus       128 ---------ADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLLArQVGV~~ivvfiNKvD~V~d~e~leLVEmE~RE  198 (449)
T KOG0460|consen  128 ---------ADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLLARQVGVKHIVVFINKVDLVDDPEMLELVEMEIRE  198 (449)
T ss_pred             ---------HHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHHHHHcCCceEEEEEecccccCCHHHHHHHHHHHHH
Confidence                     34555566667778999999999998888887766666665554 788899999984 4333333444444


Q ss_pred             HHHHHHhcCCCCCCeEEeecCC
Q 027757          178 FQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      ++..++ +-+..+|++.=||..
T Consensus       199 lLse~g-f~Gd~~PvI~GSAL~  219 (449)
T KOG0460|consen  199 LLSEFG-FDGDNTPVIRGSALC  219 (449)
T ss_pred             HHHHcC-CCCCCCCeeecchhh
Confidence            444433 223467888777654

>PRK12289 GTPase RsgA; Reviewed

Probab=98.91  E-value=3.4e-09  Score=85.99  Aligned_cols=59  Identities=31%  Similarity=0.404  Sum_probs=45.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-------eeEEeeEEEecCeEEEEeCCCCCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPG-------KTQLINHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      .++|+|++|+|||||+|+|++. ....+...++       ||++...+..+....++||||+.....
T Consensus       174 i~v~iG~SgVGKSSLIN~L~~~-~~~~t~~vs~~~~rGrHTT~~~~l~~l~~g~~liDTPG~~~~~l  239 (352)
T PRK12289        174 ITVVAGPSGVGKSSLINRLIPD-VELRVGKVSGKLGRGRHTTRHVELFELPNGGLLADTPGFNQPDL  239 (352)
T ss_pred             eEEEEeCCCCCHHHHHHHHcCc-cccccccccCCCCCCCCcCceeEEEECCCCcEEEeCCCcccccc
Confidence            4899999999999999999986 3444454554       778777776655568999999865444

>KOG1707 consensus Predicted Ras related/Rac-GTP binding protein [Defense mechanisms]

Probab=98.91  E-value=4.4e-08  Score=82.01  Aligned_cols=160  Identities=19%  Similarity=0.177  Sum_probs=95.0

Q ss_pred             CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhH
Q 027757           32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDW  108 (219)
Q Consensus        32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~  108 (219)
                      +.......+++.++|+.++|||.+++.|+|+.+.....+.......++.....+   -+++-|.+-........      
T Consensus       418 ~~~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~~~~~~~~~~~avn~v~~~g~~k~LiL~ei~~~~~~~l~~------  491 (625)
T KOG1707|consen  418 KKQTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSDNNTGTTKPRYAVNSVEVKGQQKYLILREIGEDDQDFLTS------  491 (625)
T ss_pred             cccccceeeeEEEEcCCcCchHHHHHHHhccccccccccCCCCceeeeeeeeccccceEEEeecCccccccccC------
Confidence            344456678999999999999999999999853332222222222222222222   34555554321110100      


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHH--HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN--WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~--~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                               ....+|++.+++|.+++.++.......  .....+.|+++|.+|+|+....++.....  .++.++++-  
T Consensus       492 ---------ke~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqp--de~~~~~~i--  558 (625)
T KOG1707|consen  492 ---------KEAACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQP--DEFCRQLGL--  558 (625)
T ss_pred             ---------ccceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhhhccCCCh--HHHHHhcCC--
Confidence                     012289999999999888776643222  22237899999999999987644332222  556665442  


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                         .+.+.+|.+.... .++|..|...+
T Consensus       559 ---~~P~~~S~~~~~s-~~lf~kL~~~A  582 (625)
T KOG1707|consen  559 ---PPPIHISSKTLSS-NELFIKLATMA  582 (625)
T ss_pred             ---CCCeeeccCCCCC-chHHHHHHHhh
Confidence               3445666664333 78888777654

>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF

Probab=98.91  E-value=3.5e-08  Score=77.97  Aligned_cols=94  Identities=16%  Similarity=0.157  Sum_probs=68.5

Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ...+......+.+|++++|+|+..+.+..+..+.+.+.  ++|+++|+||+|+.+.       .....+.+.+...   .
T Consensus        10 k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l~--~kp~IiVlNK~DL~~~-------~~~~~~~~~~~~~---~   77 (276)
T TIGR03596        10 KARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRG--NKPRLIVLNKADLADP-------AVTKQWLKYFEEK---G   77 (276)
T ss_pred             HHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHHC--CCCEEEEEEccccCCH-------HHHHHHHHHHHHc---C
Confidence            34444445555599999999999887777666666653  6899999999998643       2234454444331   2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+++++||+++.|++++.+.+.+.+.
T Consensus        78 ~~vi~iSa~~~~gi~~L~~~i~~~~~  103 (276)
T TIGR03596        78 IKALAINAKKGKGVKKIIKAAKKLLK  103 (276)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            47899999999999999999887654

Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.

>TIGR03348 VI_IcmF type VI secretion protein IcmF

Probab=98.86  E-value=2.2e-08  Score=93.07  Aligned_cols=125  Identities=18%  Similarity=0.240  Sum_probs=78.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccc------cCCCCeeEEeeEEEecCeEEEEeCCCCCCCC--CCcchhhhHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALT------SKKPGKTQLINHFLVNKSWYIVDLPGYGFAK--APDVTRMDWSS  110 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~------~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~--~~~~~~~~~~~  110 (219)
                      .|=-+|+|++|+||||+++.- |-.+....      ....+-|.+ ..++..++.+++||+|.-...  ........|..
T Consensus       111 LPWYlviG~~gsGKtt~l~~s-gl~~pl~~~~~~~~~~~~~~t~~-c~wwf~~~avliDtaG~y~~~~~~~~~~~~~W~~  188 (1169)
T TIGR03348       111 LPWYLVIGPPGSGKTTLLQNS-GLKFPLAERLGAAALRGVGGTRN-CDWWFTDEAVLIDTAGRYTTQDSDPEEDAAAWLG  188 (1169)
T ss_pred             CCCEEEECCCCCchhHHHHhC-CCCCcCchhhccccccCCCCCcc-cceEecCCEEEEcCCCccccCCCcccccHHHHHH
Confidence            356899999999999999987 33222211      011122332 345567788899999943221  12233455777


Q ss_pred             HHHHH--hhccCCccEEEEEEeCCCCCCcccH---H----HHHHhc------cCCCcEEEEEEccccccc
Q 027757          111 FTKGY--FLNRESLVGVLLLIDASVPPQKIDL---D----CANWLG------RNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       111 ~~~~~--~~~~~~~d~vi~v~d~~~~~~~~~~---~----~~~~~~------~~~~p~iiv~nK~D~~~~  165 (219)
                      +....  +|..+..++||+++|+.+-......   .    +...+.      ....|+.+|+||||+...
T Consensus       189 fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~~PVYvv~Tk~Dll~G  258 (1169)
T TIGR03348       189 FLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG  258 (1169)
T ss_pred             HHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEEecchhhcC
Confidence            76644  3445678999999999975443221   1    111111      268999999999998864

Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.

>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH

Probab=98.85  E-value=5.4e-08  Score=79.66  Aligned_cols=102  Identities=17%  Similarity=0.138  Sum_probs=71.1

Q ss_pred             hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      ..+.|..+...+...   ++++++|+|+.+.......++.+.+.  +.|+++|+||+|+.+..   ...+...++.++..
T Consensus        49 ~~e~f~~~l~~~~~~---~~~Il~VvD~~d~~~s~~~~l~~~~~--~~piilV~NK~DLl~k~---~~~~~~~~~l~~~~  120 (360)
T TIGR03597        49 NDDDFLNLLNSLGDS---NALIVYVVDIFDFEGSLIPELKRFVG--GNPVLLVGNKIDLLPKS---VNLSKIKEWMKKRA  120 (360)
T ss_pred             CHHHHHHHHhhcccC---CcEEEEEEECcCCCCCccHHHHHHhC--CCCEEEEEEchhhCCCC---CCHHHHHHHHHHHH
Confidence            356677777777766   79999999998766544444444443  67999999999997532   22344555544322


Q ss_pred             hcCCC-CCCeEEeecCCCCChHHHHHHHHHH
Q 027757          184 ENYPH-HPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       184 ~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ...+. ...++++||+++.|++++++.+.+.
T Consensus       121 k~~g~~~~~i~~vSAk~g~gv~eL~~~l~~~  151 (360)
T TIGR03597       121 KELGLKPVDIILVSAKKGNGIDELLDKIKKA  151 (360)
T ss_pred             HHcCCCcCcEEEecCCCCCCHHHHHHHHHHH
Confidence            22222 2358999999999999999999765

This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.

>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain

Probab=98.85  E-value=2.8e-07  Score=70.61  Aligned_cols=90  Identities=14%  Similarity=0.086  Sum_probs=56.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe------cCeEEEEeCCCCCCCCCCc-chhhhHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV------NKSWYIVDLPGYGFAKAPD-VTRMDWS  109 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~------~~~~~liDtpg~~~~~~~~-~~~~~~~  109 (219)
                      ....|.|+|++++|||+|+|.|++.. ..........+|+.+-.+..      +..++++||||+....... ....   
T Consensus         6 ~v~vvsv~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~---   82 (224)
T cd01851           6 PVAVVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDA---   82 (224)
T ss_pred             CEEEEEEECCCCCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhh---
Confidence            34579999999999999999999972 23333344556665444332      3579999999986543332 1111   


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCC
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      .+.......   ++.+||..+...
T Consensus        83 ~~~~l~~ll---ss~~i~n~~~~~  103 (224)
T cd01851          83 RLFALATLL---SSVLIYNSWETI  103 (224)
T ss_pred             HHHHHHHHH---hCEEEEeccCcc
Confidence            111211112   688888887764

Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein

>TIGR00157 ribosome small subunit-dependent GTPase A

Probab=98.84  E-value=9.2e-09  Score=79.78  Aligned_cols=58  Identities=31%  Similarity=0.296  Sum_probs=41.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQLINHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      ..++++|++|+|||||+|+|.+.. ...+.       ....||++...+.. ....++||||+....
T Consensus       121 ~~~~~~G~sgvGKStLiN~L~~~~-~~~t~~i~~~~~~G~hTT~~~~l~~l-~~~~liDtPG~~~~~  185 (245)
T TIGR00157       121 RISVFAGQSGVGKSSLINALDPSV-KQQVNDISSKLGLGKHTTTHVELFHF-HGGLIADTPGFNEFG  185 (245)
T ss_pred             CEEEEECCCCCCHHHHHHHHhhhh-hccccceeccCCCCCCcCCceEEEEc-CCcEEEeCCCccccC
Confidence            479999999999999999999863 22222       22336766666655 345899999986533

The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).

>PRK13796 GTPase YqeH; Provisional

Probab=98.83  E-value=6.3e-09  Score=85.23  Aligned_cols=57  Identities=30%  Similarity=0.486  Sum_probs=47.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc----ccccccCCCCeeEEeeEEEecCeEEEEeCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK----ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~   96 (219)
                      .++.++|.+|+|||||+|+|++..    ....+++.+|+|.....+..+....++||||+.
T Consensus       161 ~~v~vvG~~NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~l~~~~~l~DTPGi~  221 (365)
T PRK13796        161 RDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLDDGSFLYDTPGII  221 (365)
T ss_pred             CeEEEEcCCCCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEEcCCCcEEEECCCcc
Confidence            579999999999999999999642    234568899999998877777778999999984

>COG1162 Predicted GTPases [General function prediction only]

Probab=98.83  E-value=1.5e-08  Score=79.37  Aligned_cols=60  Identities=30%  Similarity=0.408  Sum_probs=45.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccc------cccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELA------LTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      ..+++|++|+|||||+|+|.+.....      ....-..||++...+..+..-.++||||+.....
T Consensus       166 ~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l  231 (301)
T COG1162         166 ITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGL  231 (301)
T ss_pred             eEEEECCCCCcHHHHHHhhCchhhhhhhhhcccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCc
Confidence            68899999999999999999853111      1224445788888888876778899999876544

>KOG0468 consensus U5 snRNP-specific protein [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.3e-08  Score=86.35  Aligned_cols=113  Identities=19%  Similarity=0.245  Sum_probs=78.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccC---------------CCCeeEEee--EEEe------cCeEEEEeCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSK---------------KPGKTQLIN--HFLV------NKSWYIVDLPGY   95 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~---------------~~~~t~~~~--~~~~------~~~~~liDtpg~   95 (219)
                      ...|+++|.-++|||+|+..|..........+               ..+++....  ....      .+-+.++||||+
T Consensus       128 irnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGH  207 (971)
T KOG0468|consen  128 IRNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGH  207 (971)
T ss_pred             EEEEEEeeccccChhHHHHhhceeccccccccccccccccccchhhHhcCceEeecceEEEEecCcCceeeeeeecCCCc
Confidence            45799999999999999999998742211110               112222211  1111      124788999996


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ...          .+-....++.   +|++++|+|+.++......++++...+.+.|+.+|+||+|++-
T Consensus       208 VnF----------~DE~ta~l~~---sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRLi  263 (971)
T KOG0468|consen  208 VNF----------SDETTASLRL---SDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRLI  263 (971)
T ss_pred             ccc----------hHHHHHHhhh---cceEEEEEEcccCceeeHHHHHHHHHhccCcEEEEEehhHHHH
Confidence            432          2222334444   8999999999999999888889988889999999999999653

>PRK09563 rbgA GTPase YlqF; Reviewed

Probab=98.83  E-value=7.2e-08  Score=76.60  Aligned_cols=94  Identities=18%  Similarity=0.203  Sum_probs=68.9

Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +..+......+.+|++|+|+|+..+.+..+..+.+.+.  ++|.++|+||+|+.+.       ...+.+.+.+...   .
T Consensus        13 k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~~-------~~~~~~~~~~~~~---~   80 (287)
T PRK09563         13 KARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLADP-------EVTKKWIEYFEEQ---G   80 (287)
T ss_pred             HHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCCH-------HHHHHHHHHHHHc---C
Confidence            44455555566699999999999887776655555554  7899999999998643       2244454444321   2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+++.+|++++.|++++.+.+.+.+.
T Consensus        81 ~~vi~vSa~~~~gi~~L~~~l~~~l~  106 (287)
T PRK09563         81 IKALAINAKKGQGVKKILKAAKKLLK  106 (287)
T ss_pred             CeEEEEECCCcccHHHHHHHHHHHHH
Confidence            47899999999999999999887654

>KOG1143 consensus Predicted translation elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.83  E-value=1.9e-08  Score=80.17  Aligned_cols=162  Identities=19%  Similarity=0.165  Sum_probs=98.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccc---------------ccc--CCCCeeEEe-eEE----Ee-----------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELA---------------LTS--KKPGKTQLI-NHF----LV-----------   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~---------------~~~--~~~~~t~~~-~~~----~~-----------   83 (219)
                      .-..|++++|...+|||||+.-|++.. ..               .+.  .+......+ .+.    .+           
T Consensus       165 fievRvAVlGg~D~GKSTLlGVLTQge-LDnG~GrARln~FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi  243 (591)
T KOG1143|consen  165 FIEVRVAVLGGCDVGKSTLLGVLTQGE-LDNGNGRARLNIFRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEI  243 (591)
T ss_pred             ceEEEEEEecCcccCcceeeeeeeccc-ccCCCCeeeeehhcchhhhccCcccccchhcccccccccccchhhcccHHHH
Confidence            336799999999999999999888652 11               000  000000000 000    00           


Q ss_pred             ----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757           84 ----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK  159 (219)
Q Consensus        84 ----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  159 (219)
                          ..-++++|..|+..-...+.          .-+ .-...|..++|+.+..+......+.+..+...++|++++++|
T Consensus       244 ~e~SSKlvTfiDLAGh~kY~~TTi----------~gL-tgY~Ph~A~LvVsA~~Gi~~tTrEHLgl~~AL~iPfFvlvtK  312 (591)
T KOG1143|consen  244 VEKSSKLVTFIDLAGHAKYQKTTI----------HGL-TGYTPHFACLVVSADRGITWTTREHLGLIAALNIPFFVLVTK  312 (591)
T ss_pred             HhhhcceEEEeecccchhhheeee----------eec-ccCCCceEEEEEEcCCCCccccHHHHHHHHHhCCCeEEEEEe
Confidence                11368899988642111110          000 112357889999999988888888888888899999999999


Q ss_pred             ccccccccCCCchHhHHHHHHHHH--------------------hcCCCCCCeEEeecCCCCChHHHHHHH
Q 027757          160 CDKMKVAKGRRPDENIKSFQQLIR--------------------ENYPHHPPWIMTSSVTGLGRDELLLHM  210 (219)
Q Consensus       160 ~D~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~Sa~~~~~v~el~~~l  210 (219)
                      +|+.+....+..-.++.++....+                    ...+.-.|+|.+|+.+|+|++-+...+
T Consensus       313 ~Dl~~~~~~~~tv~~l~nll~~~Gc~kvp~~Vt~~ddAv~Aaq~~~s~nivPif~vSsVsGegl~ll~~fL  383 (591)
T KOG1143|consen  313 MDLVDRQGLKKTVKDLSNLLAKAGCTKVPKRVTTKDDAVKAAQELCSGNIVPIFAVSSVSGEGLRLLRTFL  383 (591)
T ss_pred             eccccchhHHHHHHHHHHHHhhcCccccceEeechHHHHHHHHHhccCCceeEEEEeecCccchhHHHHHH
Confidence            999876432222222222222111                    011224689999999999998776655

>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily

Probab=98.80  E-value=1.7e-08  Score=69.73  Aligned_cols=112  Identities=13%  Similarity=-0.024  Sum_probs=65.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccccccc-CCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTS-KKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      +||+++|..|+|||+|+.++....+..... ++.+                                  +..+...+++.
T Consensus         1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~----------------------------------~~~~~~~~~~s   46 (124)
T smart00010        1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIG----------------------------------IDVYDPTSYES   46 (124)
T ss_pred             CEEEEECCCChhHHHHHHHHhcCCccccCceehhh----------------------------------hhhccccccCC
Confidence            489999999999999999997653321111 1111                                  11112223333


Q ss_pred             cCCccEEEEEEeCCCCCCcccH--HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          119 RESLVGVLLLIDASVPPQKIDL--DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                         ++.++.+++.....+....  ..+......++|.+++.||.|+....  ....+        ..      .++++.|
T Consensus        47 ---~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~~~--~~~~~--------~~------~~~~~~s  107 (124)
T smart00010       47 ---FDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEEER--QVATE--------EG------LEFAETS  107 (124)
T ss_pred             ---CCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHhhC--cCCHH--------HH------HHHHHHh
Confidence               7888888988876654321  11111123568899999999974321  11111        11      1345678


Q ss_pred             cCCCCChH
Q 027757          197 SVTGLGRD  204 (219)
Q Consensus       197 a~~~~~v~  204 (219)
                      ++++.|+.
T Consensus       108 ~~~~~~~~  115 (124)
T smart00010      108 AKTPEEGE  115 (124)
T ss_pred             CCCcchhh
Confidence            88888774

SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.

>KOG0463 consensus GTP-binding protein GP-1 [General function prediction only]

Probab=98.79  E-value=3.3e-08  Score=78.92  Aligned_cols=87  Identities=22%  Similarity=0.243  Sum_probs=60.7

Q ss_pred             ccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-----------------
Q 027757          122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE-----------------  184 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-----------------  184 (219)
                      .|.+++++-++-+.-...++.+......++|+++|++|+|+++.+-.+   +..+-+.+.+.+                 
T Consensus       245 PDf~MLMiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLq---EtmKll~rllkS~gcrK~PvlVrs~DDVv  321 (641)
T KOG0463|consen  245 PDFTMLMIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQ---ETMKLLTRLLKSPGCRKLPVLVRSMDDVV  321 (641)
T ss_pred             CCceEEEecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHH---HHHHHHHHHhcCCCcccCcEEEecccceE
Confidence            588999999987776666777777777899999999999999864211   122222222222                 


Q ss_pred             ----cCC--CCCCeEEeecCCCCChHHHHHHHH
Q 027757          185 ----NYP--HHPPWIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       185 ----~~~--~~~~~~~~Sa~~~~~v~el~~~l~  211 (219)
                          .+.  .-||+|.+|..+|.|++-|.-++.
T Consensus       322 ~~A~NF~Ser~CPIFQvSNVtG~NL~LLkmFLN  354 (641)
T KOG0463|consen  322 HAAVNFPSERVCPIFQVSNVTGTNLPLLKMFLN  354 (641)
T ss_pred             EeeccCccccccceEEeccccCCChHHHHHHHh
Confidence                111  137899999999999987765553

>PRK00098 GTPase RsgA; Reviewed

Probab=98.79  E-value=2.7e-08  Score=79.44  Aligned_cols=57  Identities=26%  Similarity=0.355  Sum_probs=42.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~~   97 (219)
                      ..++++|++|+|||||+|+|++.. ...+...+       .+|+....+..+....++||||+..
T Consensus       165 k~~~~~G~sgvGKStlin~l~~~~-~~~~g~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~  228 (298)
T PRK00098        165 KVTVLAGQSGVGKSTLLNALAPDL-ELKTGEISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSS  228 (298)
T ss_pred             ceEEEECCCCCCHHHHHHHHhCCc-CCCCcceeccCCCCCcccccEEEEEcCCCcEEEECCCcCc
Confidence            468999999999999999999863 33332222       3566666666666678999999864

>KOG0464 consensus Elongation factor G [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.7e-08  Score=81.55  Aligned_cols=127  Identities=17%  Similarity=0.166  Sum_probs=89.0

Q ss_pred             eccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCc----------------ccccccCCCCeeEE---eeEEEecCe
Q 027757           26 KSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKK----------------ELALTSKKPGKTQL---INHFLVNKS   86 (219)
Q Consensus        26 ~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~----------------~~~~~~~~~~~t~~---~~~~~~~~~   86 (219)
                      .+......++.....+|.|+....+||||..++++.-.                +........|.|..   ....|.+.+
T Consensus        24 kslhs~~~p~~akirnigiiahidagktttterily~ag~~~s~g~vddgdtvtdfla~erergitiqsaav~fdwkg~r  103 (753)
T KOG0464|consen   24 KSLHSIINPAIAKIRNIGIIAHIDAGKTTTTERILYLAGAIHSAGDVDDGDTVTDFLAIERERGITIQSAAVNFDWKGHR  103 (753)
T ss_pred             hhccCCCCCchhhhhcceeEEEecCCCchhHHHHHHHhhhhhcccccCCCchHHHHHHHHHhcCceeeeeeeecccccce
Confidence            34444444445566789999999999999999988531                00111123344432   234455678


Q ss_pred             EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      +.++||||+.......          +   ++.+..|+++.|+|++-+...+.+.++++..++++|-.+.+||+|....
T Consensus       104 inlidtpghvdf~lev----------e---rclrvldgavav~dasagve~qtltvwrqadk~~ip~~~finkmdk~~a  169 (753)
T KOG0464|consen  104 INLIDTPGHVDFRLEV----------E---RCLRVLDGAVAVFDASAGVEAQTLTVWRQADKFKIPAHCFINKMDKLAA  169 (753)
T ss_pred             EeeecCCCcceEEEEH----------H---HHHHHhcCeEEEEeccCCcccceeeeehhccccCCchhhhhhhhhhhhh
Confidence            9999999975432211          1   2233379999999999998888888888889999999999999998764

>KOG1487 consensus GTP-binding protein DRG1 (ODN superfamily) [Signal transduction mechanisms]

Probab=98.78  E-value=3.1e-08  Score=75.30  Aligned_cols=93  Identities=17%  Similarity=0.181  Sum_probs=65.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEE-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHF-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      -..-+|.++|.|.+||||++..+.+.  ...+....+++...  ... ....++.+.|.||+.....+..|+-      +
T Consensus        57 tg~a~vg~vgFPSvGksTl~~~l~g~--~s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakdgkgrg------~  128 (358)
T KOG1487|consen   57 TGDARVGFVGFPSVGKSTLLSKLTGT--FSEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKDGKGRG------K  128 (358)
T ss_pred             ecceeeeEEecCccchhhhhhhhcCC--CCccccccceeEEEecceEeccccceeeecCcchhcccccCCCCc------c
Confidence            34568999999999999999999996  35555555555432  333 3345899999999876555544421      2


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCc
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQK  137 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~  137 (219)
                      +.+.-++.+..+++|+|+-.|.+.
T Consensus       129 qviavartcnli~~vld~~kp~~h  152 (358)
T KOG1487|consen  129 QVIAVARTCNLIFIVLDVLKPLSH  152 (358)
T ss_pred             EEEEEeecccEEEEEeeccCcccH
Confidence            333334558899999999987765

>KOG0466 consensus Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]

Probab=98.78  E-value=1.4e-08  Score=78.84  Aligned_cols=159  Identities=17%  Similarity=0.196  Sum_probs=102.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc---cc----------------------ccccCCCCeeEEe-------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK---EL----------------------ALTSKKPGKTQLI-------------   78 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~---~~----------------------~~~~~~~~~t~~~-------------   78 (219)
                      ...++|.-+|..-.||||++.++.|-.   |.                      ....+.+.+-+..             
T Consensus        36 QATiNIGTIGHVAHGKSTvVkAiSGv~TvrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~  115 (466)
T KOG0466|consen   36 QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRP  115 (466)
T ss_pred             eeeeeecceeccccCcceeeeeeccceEEEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccC
Confidence            335788889999999999999998752   00                      0111222211110             


Q ss_pred             ---eEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC----CCCcccHHHHHHhccCCC
Q 027757           79 ---NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV----PPQKIDLDCANWLGRNNI  151 (219)
Q Consensus        79 ---~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----~~~~~~~~~~~~~~~~~~  151 (219)
                         ..+..-.++.++|+||++             -+....++++...|+.++++..++    |.+..++...+.++  =+
T Consensus       116 g~~~~~klvRHVSfVDCPGHD-------------iLMaTMLnGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~--Lk  180 (466)
T KOG0466|consen  116 GCEGKMKLVRHVSFVDCPGHD-------------ILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMK--LK  180 (466)
T ss_pred             CCCCceEEEEEEEeccCCchH-------------HHHHHHhcchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhh--hc
Confidence               001112367899999963             244566777666799999998875    34444444444444  35


Q ss_pred             cEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          152 PLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       152 p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .++++-||+|+...++.   .+..++...-+.....+..|++++||.-+.|++-+.+++.+.
T Consensus       181 hiiilQNKiDli~e~~A---~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkk  239 (466)
T KOG0466|consen  181 HIIILQNKIDLIKESQA---LEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKK  239 (466)
T ss_pred             eEEEEechhhhhhHHHH---HHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhc
Confidence            68999999999875433   233333333333344456799999999999999999998763

>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]

Probab=98.77  E-value=3.2e-08  Score=79.27  Aligned_cols=87  Identities=23%  Similarity=0.213  Sum_probs=65.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---------------------cCeEEEEeCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---------------------NKSWYIVDLPGYGF   97 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---------------------~~~~~liDtpg~~~   97 (219)
                      .++++|+|-||+|||||.|+++...  +...++|.||.+++....                     .-.+.++|.+|+..
T Consensus         2 ~l~~GIVGlPNVGKSTlFnAlT~~~--a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~   79 (372)
T COG0012           2 SLKIGIVGLPNVGKSTLFNALTKAG--AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVK   79 (372)
T ss_pred             CceeEEecCCCCcHHHHHHHHHcCC--ccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCC
Confidence            3689999999999999999999973  777888888876543221                     12578999999764


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      ....-.|      +...|+...+.+|+++.|+|+..
T Consensus        80 GAs~GeG------LGNkFL~~IRevdaI~hVVr~f~  109 (372)
T COG0012          80 GASKGEG------LGNKFLDNIREVDAIIHVVRCFG  109 (372)
T ss_pred             CcccCCC------cchHHHHhhhhcCeEEEEEEecC
Confidence            4333222      44677777888999999999984

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=98.77  E-value=9.7e-09  Score=84.75  Aligned_cols=61  Identities=36%  Similarity=0.496  Sum_probs=55.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      ...|++||.||+||||+||+|.|. -...++.+||.|++..++.....+.|.||||+.+...
T Consensus       314 ~vtVG~VGYPNVGKSSTINaLvG~-KkVsVS~TPGkTKHFQTi~ls~~v~LCDCPGLVfPSf  374 (562)
T KOG1424|consen  314 VVTVGFVGYPNVGKSSTINALVGR-KKVSVSSTPGKTKHFQTIFLSPSVCLCDCPGLVFPSF  374 (562)
T ss_pred             eeEEEeecCCCCchhHHHHHHhcC-ceeeeecCCCCcceeEEEEcCCCceecCCCCccccCC
Confidence            578999999999999999999998 4677899999999999999999999999999865433

>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins

Probab=98.76  E-value=9.8e-08  Score=80.10  Aligned_cols=66  Identities=24%  Similarity=0.213  Sum_probs=42.5

Q ss_pred             CCcEEEEEEcccccccccC--CCchHhHHHHHHHHHhcC-CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          150 NIPLTFVFTKCDKMKVAKG--RRPDENIKSFQQLIRENY-PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       150 ~~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+|++||++|+|....-+.  ...++.++-+.+.++..+ ..+...|.+|++...+++-|+++|.+.+.
T Consensus       196 Gipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~  264 (472)
T PF05783_consen  196 GIPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLY  264 (472)
T ss_pred             CcceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhc
Confidence            4799999999997542111  122233333333343322 12357899999999999999999877653

The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].

>KOG0467 consensus Translation elongation factor 2/ribosome biogenesis protein RIA1 and related proteins [Translation, ribosomal structure and biogenesis]

Probab=98.73  E-value=1.2e-07  Score=81.71  Aligned_cols=114  Identities=19%  Similarity=0.162  Sum_probs=80.1

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC----------------CCCeeEE---eeEEEecCeEEEEeCCCC
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK----------------KPGKTQL---INHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~----------------~~~~t~~---~~~~~~~~~~~liDtpg~   95 (219)
                      .......++++.....|||||...|+..+  ...++                +.|.|..   +.....+.-+.+||+||+
T Consensus         5 ~~~~irn~~~vahvdhgktsladsl~asn--gvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspgh   82 (887)
T KOG0467|consen    5 GSEGIRNICLVAHVDHGKTSLADSLVASN--GVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGH   82 (887)
T ss_pred             CCCceeEEEEEEEecCCccchHHHHHhhc--cEechhhccceeeccccchhhhhceeeeccccccccCceEEEEecCCCc
Confidence            34567789999999999999999998763  22221                1222221   122223456899999996


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      .++          .+......+-   +|+.++++|+-++...+...++++....+...++|+||+|..
T Consensus        83 vdf----------~sevssas~l---~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkidrl  137 (887)
T KOG0467|consen   83 VDF----------SSEVSSASRL---SDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKIDRL  137 (887)
T ss_pred             cch----------hhhhhhhhhh---cCCcEEEEeeccccchhHHHHHHHHHHccCceEEEEehhhhH
Confidence            432          2333333333   799999999999998888888886666688999999999943

>PRK12289 GTPase RsgA; Reviewed

Probab=98.72  E-value=9.2e-08  Score=77.70  Aligned_cols=81  Identities=16%  Similarity=0.208  Sum_probs=57.7

Q ss_pred             ccEEEEEEeCCCCCCccc--HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          122 LVGVLLLIDASVPPQKID--LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      +|.+++|+|+.++.....  .+++..+...++|+++|+||+|+.+.       ...+.+.+.+..   ...+++++||++
T Consensus        90 vD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~-------~~~~~~~~~~~~---~g~~v~~iSA~t  159 (352)
T PRK12289         90 ADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP-------TEQQQWQDRLQQ---WGYQPLFISVET  159 (352)
T ss_pred             CCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh-------HHHHHHHHHHHh---cCCeEEEEEcCC
Confidence            899999999987653221  22333334478999999999999753       234455554432   225789999999


Q ss_pred             CCChHHHHHHHHH
Q 027757          200 GLGRDELLLHMSQ  212 (219)
Q Consensus       200 ~~~v~el~~~l~~  212 (219)
                      +.|+++|++++..
T Consensus       160 g~GI~eL~~~L~~  172 (352)
T PRK12289        160 GIGLEALLEQLRN  172 (352)
T ss_pred             CCCHHHHhhhhcc
Confidence            9999999988864

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.69  E-value=7.8e-08  Score=76.36  Aligned_cols=57  Identities=30%  Similarity=0.376  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEEeeEEEecCeEEEEeCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQLINHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpg~~~   97 (219)
                      ..++++|++|+|||||+|.|++.. .....       ....+|.....+.......++||||+..
T Consensus       162 k~~~~~G~sg~GKSTlin~l~~~~-~~~~g~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~  225 (287)
T cd01854         162 KTSVLVGQSGVGKSTLINALLPDL-DLATGEISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFRE  225 (287)
T ss_pred             ceEEEECCCCCCHHHHHHHHhchh-hccccceeccCCCCCcccceEEEEEcCCCCEEEECCCCCc
Confidence            579999999999999999999863 22211       2233566666666655568999999854

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=98.67  E-value=2e-07  Score=78.15  Aligned_cols=136  Identities=22%  Similarity=0.208  Sum_probs=84.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccccccc-CCCC-eeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTS-KKPG-KTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-~~~~-~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++-|+++||+|+|||||+..|+.+ +...+- ...| .|...   .....++++.+|.-.            +.+.+- 
T Consensus        68 PPfIvavvGPpGtGKsTLirSlVrr-~tk~ti~~i~GPiTvvs---gK~RRiTflEcp~Dl------------~~miDv-  130 (1077)
T COG5192          68 PPFIVAVVGPPGTGKSTLIRSLVRR-FTKQTIDEIRGPITVVS---GKTRRITFLECPSDL------------HQMIDV-  130 (1077)
T ss_pred             CCeEEEeecCCCCChhHHHHHHHHH-HHHhhhhccCCceEEee---cceeEEEEEeChHHH------------HHHHhH-
Confidence            3567889999999999999999986 222111 1111 11111   123368899998521            222222 


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHHHHH----hcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIR----ENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~  190 (219)
                         ++-+|+|++++|.+=+..-...+++..+..++.| ++.|+|..|+-...      ..+......+.    .......
T Consensus       131 ---aKIaDLVlLlIdgnfGfEMETmEFLnil~~HGmPrvlgV~ThlDlfk~~------stLr~~KKrlkhRfWtEiyqGa  201 (1077)
T COG5192         131 ---AKIADLVLLLIDGNFGFEMETMEFLNILISHGMPRVLGVVTHLDLFKNP------STLRSIKKRLKHRFWTEIYQGA  201 (1077)
T ss_pred             ---HHhhheeEEEeccccCceehHHHHHHHHhhcCCCceEEEEeecccccCh------HHHHHHHHHHhhhHHHHHcCCc
Confidence               3337999999999876665556778888878877 88899999987542      22333333222    2222346


Q ss_pred             CeEEeecCC
Q 027757          191 PWIMTSSVT  199 (219)
Q Consensus       191 ~~~~~Sa~~  199 (219)
                      ..|.+|-..
T Consensus       202 KlFylsgV~  210 (1077)
T COG5192         202 KLFYLSGVE  210 (1077)
T ss_pred             eEEEecccc
Confidence            778887654

>KOG0465 consensus Mitochondrial elongation factor [Translation, ribosomal structure and biogenesis]

Probab=98.65  E-value=3.6e-08  Score=82.93  Aligned_cols=139  Identities=18%  Similarity=0.177  Sum_probs=94.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-cccc---------------ccCCCCeeEE---eeEEEecCeEEEEeCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-ELAL---------------TSKKPGKTQL---INHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~~---------------~~~~~~~t~~---~~~~~~~~~~~liDtpg~~~   97 (219)
                      .....|.+...-.+||||+-++.+... ....               .....++|..   ....|.+.++.+|||||+..
T Consensus        37 ~k~RNIgi~AhidsgKTT~tEr~Lyy~G~~~~i~ev~~~~a~md~m~~er~rgITiqSAAt~~~w~~~~iNiIDTPGHvD  116 (721)
T KOG0465|consen   37 NKIRNIGISAHIDAGKTTLTERMLYYTGRIKHIGEVRGGGATMDSMELERQRGITIQSAATYFTWRDYRINIIDTPGHVD  116 (721)
T ss_pred             hhhcccceEEEEecCCceeeheeeeecceeeeccccccCceeeehHHHHHhcCceeeeceeeeeeccceeEEecCCCcee
Confidence            456679999999999999999888542 0110               1111122221   12334467899999999753


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS  177 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  177 (219)
                      ...             ..-+..+..|+.|+|+|+-.+...+...+.+++++.++|-+..+||+|....        ..-.
T Consensus       117 FT~-------------EVeRALrVlDGaVlvl~aV~GVqsQt~tV~rQ~~ry~vP~i~FiNKmDRmGa--------~~~~  175 (721)
T KOG0465|consen  117 FTF-------------EVERALRVLDGAVLVLDAVAGVESQTETVWRQMKRYNVPRICFINKMDRMGA--------SPFR  175 (721)
T ss_pred             EEE-------------EehhhhhhccCeEEEEEcccceehhhHHHHHHHHhcCCCeEEEEehhhhcCC--------ChHH
Confidence            322             1122344479999999999998888889999999999999999999998864        3445


Q ss_pred             HHHHHHhcCCCCCCeEEee
Q 027757          178 FQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       178 ~~~~~~~~~~~~~~~~~~S  196 (219)
                      .++++...+.....++.+-
T Consensus       176 ~l~~i~~kl~~~~a~vqiP  194 (721)
T KOG0465|consen  176 TLNQIRTKLNHKPAVVQIP  194 (721)
T ss_pred             HHHHHHhhcCCchheeEcc
Confidence            5566655555444444443

>PRK00098 GTPase RsgA; Reviewed

Probab=98.64  E-value=1.9e-07  Score=74.61  Aligned_cols=83  Identities=23%  Similarity=0.197  Sum_probs=57.7

Q ss_pred             CCccEEEEEEeCCCCCCcccH--HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757          120 ESLVGVLLLIDASVPPQKIDL--DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  197 (219)
                      ..+|.+++|+|+.++......  +.+..+...++|+++|+||+|+.+.      .+...++.+.+...   ..+++++||
T Consensus        79 aniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~~~------~~~~~~~~~~~~~~---g~~v~~vSA  149 (298)
T PRK00098         79 ANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLLDD------LEEARELLALYRAI---GYDVLELSA  149 (298)
T ss_pred             ecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcCCC------HHHHHHHHHHHHHC---CCeEEEEeC
Confidence            348999999999877554332  2333345578999999999999632      12333344433321   257999999


Q ss_pred             CCCCChHHHHHHHH
Q 027757          198 VTGLGRDELLLHMS  211 (219)
Q Consensus       198 ~~~~~v~el~~~l~  211 (219)
                      +++.|++++++.+.
T Consensus       150 ~~g~gi~~L~~~l~  163 (298)
T PRK00098        150 KEGEGLDELKPLLA  163 (298)
T ss_pred             CCCccHHHHHhhcc
Confidence            99999999998774

>cd00066 G-alpha G protein alpha subunit

Probab=98.62  E-value=3e-07  Score=74.08  Aligned_cols=113  Identities=9%  Similarity=-0.010  Sum_probs=64.2

Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcc------c--HHHHHHhc---c----CCCcEEEEEEcccccc
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI------D--LDCANWLG---R----NNIPLTFVFTKCDKMK  164 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~------~--~~~~~~~~---~----~~~p~iiv~nK~D~~~  164 (219)
                      ++.+|+...+..|..++.+   ++++|||+|.++.....      .  .+.+..+.   .    .+.|+++++||.|+..
T Consensus       166 ~DvgGq~~~R~kW~~~f~~---v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~~pill~~NK~D~f~  242 (317)
T cd00066         166 FDVGGQRSERKKWIHCFED---VTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFANTSIILFLNKKDLFE  242 (317)
T ss_pred             ECCCCCcccchhHHHHhCC---CCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccCCCEEEEccChHHHH
Confidence            3333444456777788877   89999999999743210      0  11111111   1    5789999999999643


Q ss_pred             ccc---------------CCCchHhHHHHHHHHHhcC---CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          165 VAK---------------GRRPDENIKSFQQLIRENY---PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       165 ~~~---------------~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..-               ....+...+-+...+....   +..+-+..++|..-.+++.+|+.+.+.+.
T Consensus       243 ~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~  311 (317)
T cd00066         243 EKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIIL  311 (317)
T ss_pred             HhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHH
Confidence            210               0111111222222232222   12344567788888888888888877554

The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.

>KOG0447 consensus Dynamin-like GTP binding protein [General function prediction only]

Probab=98.62  E-value=3.2e-06  Score=70.89  Aligned_cols=128  Identities=23%  Similarity=0.293  Sum_probs=81.3

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC--------------------------------------------
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK--------------------------------------------   70 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~--------------------------------------------   70 (219)
                      .....|+|+++|...+||||.++.+......+..+.                                            
T Consensus       304 t~DhLPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~  383 (980)
T KOG0447|consen  304 TQDHLPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEI  383 (980)
T ss_pred             ccccCceEEEEcCccccchHHHHHHHHhccCcCCCcceeccCCeEEEeccCcchhhhhccccccccccchhHHHHHHHHH
Confidence            345578999999999999999999887643322111                                            


Q ss_pred             --------CCCeeEEeeEEE--ecC----eEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           71 --------KPGKTQLINHFL--VNK----SWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        71 --------~~~~t~~~~~~~--~~~----~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                              ..|+|.......  +.+    +.+++|.||+.....   .....+....+.+.|..+   .+++|+++--.+
T Consensus       384 E~RMr~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~N---PNAIILCIQDGS  460 (980)
T KOG0447|consen  384 ELRMRKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQN---PNAIILCIQDGS  460 (980)
T ss_pred             HHHHHhcccCCcccccceEEEeecCCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcC---CCeEEEEeccCC
Confidence                    112333222111  111    689999999754322   233445556778888777   788888775443


Q ss_pred             CCCc--ccHHHHHHhccCCCcEEEEEEccccccc
Q 027757          134 PPQK--IDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       134 ~~~~--~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      -+..  .-.++...+...+...|+|+||.|+...
T Consensus       461 VDAERSnVTDLVsq~DP~GrRTIfVLTKVDlAEk  494 (980)
T KOG0447|consen  461 VDAERSIVTDLVSQMDPHGRRTIFVLTKVDLAEK  494 (980)
T ss_pred             cchhhhhHHHHHHhcCCCCCeeEEEEeecchhhh
Confidence            2211  1124556666788899999999998754

>PRK10416 signal recognition particle-docking protein FtsY; Provisional

Probab=98.59  E-value=1.4e-06  Score=70.01  Aligned_cols=151  Identities=17%  Similarity=0.139  Sum_probs=79.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccccc------ccCCCC------------eeEEeeEE-------------------
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELAL------TSKKPG------------KTQLINHF-------------------   81 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~------~~~~~~------------~t~~~~~~-------------------   81 (219)
                      ...++++|++|+||||++..|.+.- ...      ......            ........                   
T Consensus       114 ~~vi~lvGpnGsGKTTt~~kLA~~l-~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~~dpa~~v~~~l~~~  192 (318)
T PRK10416        114 PFVILVVGVNGVGKTTTIGKLAHKY-KAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEGADPASVAFDAIQAA  192 (318)
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHHH-HhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCCCCHHHHHHHHHHHH
Confidence            4578999999999999999888641 110      000000            00000111                   


Q ss_pred             -EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh-hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757           82 -LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF-LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK  159 (219)
Q Consensus        82 -~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  159 (219)
                       ..+..++++||||......  ....++..+.+..- ......+.+++|+|++.+..... . .....+.-.+.-+|+||
T Consensus       193 ~~~~~D~ViIDTaGr~~~~~--~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~-a~~f~~~~~~~giIlTK  268 (318)
T PRK10416        193 KARGIDVLIIDTAGRLHNKT--NLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-Q-AKAFHEAVGLTGIILTK  268 (318)
T ss_pred             HhCCCCEEEEeCCCCCcCCH--HHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-H-HHHHHhhCCCCEEEEEC
Confidence             1134789999999643221  11122223322110 01123578999999995433221 1 22222222356899999


Q ss_pred             ccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757          160 CDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL  208 (219)
Q Consensus       160 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~  208 (219)
                      .|.....      -.+-.+....+      .|+.+++  +|.+++++..
T Consensus       269 lD~t~~~------G~~l~~~~~~~------~Pi~~v~--~Gq~~~Dl~~  303 (318)
T PRK10416        269 LDGTAKG------GVVFAIADELG------IPIKFIG--VGEGIDDLQP  303 (318)
T ss_pred             CCCCCCc------cHHHHHHHHHC------CCEEEEe--CCCChhhCcc
Confidence            9954321      12333333332      6888888  7777777643

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=98.57  E-value=5.1e-08  Score=78.29  Aligned_cols=62  Identities=29%  Similarity=0.527  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      ...+-|+++|.+++||||+||.|-.. ....+.|.+|.|..+.+++.-..++||||||+....
T Consensus       305 kkqISVGfiGYPNvGKSSiINTLR~K-kVCkvAPIpGETKVWQYItLmkrIfLIDcPGvVyps  366 (572)
T KOG2423|consen  305 KKQISVGFIGYPNVGKSSIINTLRKK-KVCKVAPIPGETKVWQYITLMKRIFLIDCPGVVYPS  366 (572)
T ss_pred             ccceeeeeecCCCCchHHHHHHHhhc-ccccccCCCCcchHHHHHHHHhceeEecCCCccCCC
Confidence            44688999999999999999999997 689999999999999988888899999999976443

>cd03112 CobW_like The function of this protein family is unkown

Probab=98.57  E-value=4.5e-07  Score=65.67  Aligned_cols=69  Identities=17%  Similarity=0.223  Sum_probs=39.5

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHH-HHHHHhhccCCccEEEEEEeCCCCCCcc--cHHHHHHhccCCCcEEEEEEccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSS-FTKGYFLNRESLVGVLLLIDASVPPQKI--DLDCANWLGRNNIPLTFVFTKCD  161 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~vi~v~d~~~~~~~~--~~~~~~~~~~~~~p~iiv~nK~D  161 (219)
                      .+.+++||||+....      ...+. +....+...-.+|.+++++|+.+.....  ......++...+   ++|+||+|
T Consensus        87 ~d~I~IEt~G~~~p~------~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~ad---~ivlnk~d  157 (158)
T cd03112          87 FDRIVIETTGLADPG------PVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAFAD---RILLNKTD  157 (158)
T ss_pred             CCEEEEECCCcCCHH------HHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHHCC---EEEEeccc
Confidence            367899999975321      11111 1122333444479999999997533221  112234444444   88999999


Q ss_pred             c
Q 027757          162 K  162 (219)
Q Consensus       162 ~  162 (219)
                      +
T Consensus       158 l  158 (158)
T cd03112         158 L  158 (158)
T ss_pred             C
Confidence            5

The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.

>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.56  E-value=5.2e-07  Score=82.49  Aligned_cols=124  Identities=23%  Similarity=0.326  Sum_probs=79.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccc-----cccCCCCeeEEeeEEEecCeEEEEeCCCC-CCC-CCCcchhhhHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELA-----LTSKKPGKTQLINHFLVNKSWYIVDLPGY-GFA-KAPDVTRMDWSSFT  112 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~-----~~~~~~~~t~~~~~~~~~~~~~liDtpg~-~~~-~~~~~~~~~~~~~~  112 (219)
                      |=-+|+|++|+||||++..--..-.+.     ......+ |.++. ++...+.++|||.|- ... ..+.....+|..+.
T Consensus       126 PWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~~cd-wwf~deaVlIDtaGry~~q~s~~~~~~~~W~~fL  203 (1188)
T COG3523         126 PWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TRNCD-WWFTDEAVLIDTAGRYITQDSADEVDRAEWLGFL  203 (1188)
T ss_pred             CceEEecCCCCCcchHHhcccccCcchhhhccccccCCC-CcccC-cccccceEEEcCCcceecccCcchhhHHHHHHHH
Confidence            446889999999999887654431111     1122223 45555 677788999999993 222 23344566666664


Q ss_pred             HH--HhhccCCccEEEEEEeCCCCCCcccHHH---HHHhc----------cCCCcEEEEEEccccccc
Q 027757          113 KG--YFLNRESLVGVLLLIDASVPPQKIDLDC---ANWLG----------RNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       113 ~~--~~~~~~~~d~vi~v~d~~~~~~~~~~~~---~~~~~----------~~~~p~iiv~nK~D~~~~  165 (219)
                      ..  .++..+..++||+.+++.+-.+....+.   ...++          ....|+++++||.|+.+.
T Consensus       204 ~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~~~~PVYl~lTk~Dll~G  271 (1188)
T COG3523         204 GLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLHARLPVYLVLTKADLLPG  271 (1188)
T ss_pred             HHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhccCCceEEEEeccccccc
Confidence            43  3556667899999999997544333211   22222          267999999999999874

>PRK14974 cell division protein FtsY; Provisional

Probab=98.54  E-value=1.4e-06  Score=70.33  Aligned_cols=101  Identities=17%  Similarity=0.099  Sum_probs=56.1

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..++++||+|.....  .   ..+..+ ....+.. ..|.+++|+|+..+...  ....+.+...-..--+++||.|...
T Consensus       223 ~DvVLIDTaGr~~~~--~---~lm~eL-~~i~~~~-~pd~~iLVl~a~~g~d~--~~~a~~f~~~~~~~giIlTKlD~~~  293 (336)
T PRK14974        223 IDVVLIDTAGRMHTD--A---NLMDEL-KKIVRVT-KPDLVIFVGDALAGNDA--VEQAREFNEAVGIDGVILTKVDADA  293 (336)
T ss_pred             CCEEEEECCCccCCc--H---HHHHHH-HHHHHhh-CCceEEEeeccccchhH--HHHHHHHHhcCCCCEEEEeeecCCC
Confidence            368999999965321  1   111222 2222222 25889999999754321  2223333322235688999999865


Q ss_pred             cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757          165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL  208 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~  208 (219)
                      ..+      ..-.+....+      .|+.+++  +|.+++++..
T Consensus       294 ~~G------~~ls~~~~~~------~Pi~~i~--~Gq~v~Dl~~  323 (336)
T PRK14974        294 KGG------AALSIAYVIG------KPILFLG--VGQGYDDLIP  323 (336)
T ss_pred             Ccc------HHHHHHHHHC------cCEEEEe--CCCChhhccc
Confidence            321      2222233322      6888887  7888877654

>TIGR00092 GTP-binding protein YchF

Probab=98.54  E-value=5e-07  Score=73.37  Aligned_cols=87  Identities=18%  Similarity=0.095  Sum_probs=58.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEec------------------CeEEEEeCCCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLVN------------------KSWYIVDLPGYGFAK   99 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~~------------------~~~~liDtpg~~~~~   99 (219)
                      .+++|+|.+++|||||+|++++.. .....+.+.+|..+..  ....                  ..+.++|.||+....
T Consensus         3 lk~GivGlPn~GKSTlfnaLT~~~-~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gA   81 (368)
T TIGR00092         3 LSGGIVGLPNVGKSTLFAATTNLL-GNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGA   81 (368)
T ss_pred             ceEEEECCCCCChHHHHHHHhCCC-ccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccch
Confidence            689999999999999999999974 3255555666554322  2211                  257899999975432


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      ....|      +...++...+.+|+++.|+++.+
T Consensus        82 s~g~G------lgn~fL~~ir~~d~l~hVvr~f~  109 (368)
T TIGR00092        82 SKGEG------LGNQFLANIREVDIIQHVVRCFE  109 (368)
T ss_pred             hcccC------cchHHHHHHHhCCEEEEEEeCCC
Confidence            22211      22345555666999999999864

This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.

>TIGR00064 ftsY signal recognition particle-docking protein FtsY

Probab=98.52  E-value=3.5e-06  Score=66.34  Aligned_cols=106  Identities=17%  Similarity=0.120  Sum_probs=56.7

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh-hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF-LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ..++++||||....  +..-..++..+....- .....+|.+++|+|++.+..  .......+.+.-.+.-+|+||.|..
T Consensus       155 ~D~ViIDT~G~~~~--d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~--~~~~~~~f~~~~~~~g~IlTKlDe~  230 (272)
T TIGR00064       155 IDVVLIDTAGRLQN--KVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQN--ALEQAKVFNEAVGLTGIILTKLDGT  230 (272)
T ss_pred             CCEEEEeCCCCCcc--hHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCCHH--HHHHHHHHHhhCCCCEEEEEccCCC
Confidence            47899999997532  2222222222222111 00123688999999974322  2222222222123568899999976


Q ss_pred             ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757          164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL  208 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~  208 (219)
                      ...      -..-.+....+      .|+.+++  +|.+++++..
T Consensus       231 ~~~------G~~l~~~~~~~------~Pi~~~~--~Gq~~~dl~~  261 (272)
T TIGR00064       231 AKG------GIILSIAYELK------LPIKFIG--VGEKIDDLAP  261 (272)
T ss_pred             CCc------cHHHHHHHHHC------cCEEEEe--CCCChHhCcc
Confidence            432      12333333332      6888888  7777777644

There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.

>smart00275 G_alpha G protein alpha subunit

Probab=98.51  E-value=1e-06  Score=71.60  Aligned_cols=112  Identities=10%  Similarity=-0.005  Sum_probs=63.7

Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC---------ccc--HHHHHHhcc----CCCcEEEEEEcccccc
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ---------KID--LDCANWLGR----NNIPLTFVFTKCDKMK  164 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~---------~~~--~~~~~~~~~----~~~p~iiv~nK~D~~~  164 (219)
                      |+.+|+...+..|..++.+   ++++|||+|.++...         ...  +..+..+-.    .+.|+++++||.|+..
T Consensus       189 ~DvgGqr~~R~kW~~~f~~---v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~~~~~~piil~~NK~D~~~  265 (342)
T smart00275      189 FDVGGQRSERKKWIHCFDN---VTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSRWFANTSIILFLNKIDLFE  265 (342)
T ss_pred             EecCCchhhhhhHHHHhCC---CCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCccccCCcEEEEEecHHhHH
Confidence            3444455557788888877   899999999997421         110  111221111    5789999999999653


Q ss_pred             ccc--------------CCCchHhHHHHHHHHHhcCC----CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          165 VAK--------------GRRPDENIKSFQQLIRENYP----HHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       165 ~~~--------------~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ..-              ....+...+-+.+.+.....    ..+-+..++|..-.++..+++.+.+..
T Consensus       266 ~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I  333 (342)
T smart00275      266 EKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDII  333 (342)
T ss_pred             HHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHH
Confidence            211              11111112222223332222    223456777887788888887776643

Subunit of G proteins that contains the guanine nucleotide binding site

>PRK13796 GTPase YqeH; Provisional

Probab=98.51  E-value=2.9e-06  Score=69.68  Aligned_cols=88  Identities=19%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             cc-EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC-CCCeEEeecCC
Q 027757          122 LV-GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVT  199 (219)
Q Consensus       122 ~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~  199 (219)
                      .| .+++|+|+.+........+.+...  +.|+++|+||+|+.+..   ...+.++++.+......+. ...++.+||++
T Consensus        69 ~~~lIv~VVD~~D~~~s~~~~L~~~~~--~kpviLViNK~DLl~~~---~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~  143 (365)
T PRK13796         69 SDALVVNVVDIFDFNGSWIPGLHRFVG--NNPVLLVGNKADLLPKS---VKKNKVKNWLRQEAKELGLRPVDVVLISAQK  143 (365)
T ss_pred             cCcEEEEEEECccCCCchhHHHHHHhC--CCCEEEEEEchhhCCCc---cCHHHHHHHHHHHHHhcCCCcCcEEEEECCC
Confidence            44 899999998865443333333332  68999999999997531   2234455555544333322 23689999999


Q ss_pred             CCChHHHHHHHHHHH
Q 027757          200 GLGRDELLLHMSQLR  214 (219)
Q Consensus       200 ~~~v~el~~~l~~~~  214 (219)
                      +.|++++++.+.+..
T Consensus       144 g~gI~eL~~~I~~~~  158 (365)
T PRK13796        144 GHGIDELLEAIEKYR  158 (365)
T ss_pred             CCCHHHHHHHHHHhc
Confidence            999999999997653

>COG0523 Putative GTPases (G3E family) [General function prediction only]

Probab=98.50  E-value=2.4e-06  Score=68.60  Aligned_cols=142  Identities=18%  Similarity=0.229  Sum_probs=79.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcc---cccccCCCC---ee-------E--Eee-------EEE---------------
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKE---LALTSKKPG---KT-------Q--LIN-------HFL---------------   82 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~---~~~~~~~~~---~t-------~--~~~-------~~~---------------   82 (219)
                      +-.+|-|.=|||||||+|+++.+..   .+..-+..|   ..       .  .+.       ..+               
T Consensus         2 pVtvitGFLGsGKTTlL~~lL~~~~g~kiAVIVNEfGEvgID~~~~l~~~~e~~~El~nGCICCT~r~dl~~~~~~L~~~   81 (323)
T COG0523           2 PVTVITGFLGSGKTTLLNHLLANRDGKKIAVIVNEFGEVGIDGGALLSDTGEEVVELTNGCICCTVRDDLLPALERLLRR   81 (323)
T ss_pred             CEEEEeecCCCCHHHHHHHHHhccCCCcEEEEEecCccccccCCCccccCCccEEEeCCceEEEeccchhHHHHHHHHhc
Confidence            4578899999999999999998742   111111000   00       0  000       011               


Q ss_pred             -ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc---HHHHHHhccCCCcEEEEEE
Q 027757           83 -VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID---LDCANWLGRNNIPLTFVFT  158 (219)
Q Consensus        83 -~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~---~~~~~~~~~~~~p~iiv~n  158 (219)
                       .+...++|.|-|+..+     .......+....+...-..|++|.|+|+.+......   .....++.-.+   ++|+|
T Consensus        82 ~~~~D~ivIEtTGlA~P-----~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia~AD---~ivlN  153 (323)
T COG0523          82 RDRPDRLVIETTGLADP-----APVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLAFAD---VIVLN  153 (323)
T ss_pred             cCCCCEEEEeCCCCCCC-----HHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHHhCc---EEEEe
Confidence             0125688899887543     111112222233434444689999999998655433   12223333333   99999


Q ss_pred             cccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  197 (219)
                      |+|+.+++       .++.+...++. .+...+++.++.
T Consensus       154 K~Dlv~~~-------~l~~l~~~l~~-lnp~A~i~~~~~  184 (323)
T COG0523         154 KTDLVDAE-------ELEALEARLRK-LNPRARIIETSY  184 (323)
T ss_pred             cccCCCHH-------HHHHHHHHHHH-hCCCCeEEEccc
Confidence            99999862       34444444443 344467888776

>KOG1491 consensus Predicted GTP-binding protein (ODN superfamily) [General function prediction only]

Probab=98.49  E-value=6.7e-07  Score=70.64  Aligned_cols=89  Identities=21%  Similarity=0.227  Sum_probs=65.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--------------------cCeEEEEeCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--------------------NKSWYIVDLPGYG   96 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--------------------~~~~~liDtpg~~   96 (219)
                      .+.++++|+|-+++|||||+|+|+...  +...+.|.+|.++.+-.+                    ...+.+.|..|+.
T Consensus        18 ~~~lkiGIVGlPNvGKST~fnalT~~~--a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLv   95 (391)
T KOG1491|consen   18 GNNLKIGIVGLPNVGKSTFFNALTKSK--AGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLV   95 (391)
T ss_pred             CCcceeeEeeCCCCchHHHHHHHhcCC--CCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccc
Confidence            467899999999999999999999973  447888888877654322                    1257899999975


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      .....-.      -+...|+...+.+|+++-|+++..
T Consensus        96 kGAs~G~------GLGN~FLs~iR~vDaifhVVr~f~  126 (391)
T KOG1491|consen   96 KGASAGE------GLGNKFLSHIRHVDAIFHVVRAFE  126 (391)
T ss_pred             cCcccCc------CchHHHHHhhhhccceeEEEEecC
Confidence            4322222      244566666777999999998874

>cd01854 YjeQ_engC YjeQ/EngC

Probab=98.48  E-value=8e-07  Score=70.64  Aligned_cols=81  Identities=19%  Similarity=0.085  Sum_probs=55.6

Q ss_pred             ccEEEEEEeCCCCC-CcccH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          122 LVGVLLLIDASVPP-QKIDL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       122 ~d~vi~v~d~~~~~-~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      +|.+++|+|+.++. +.... +.+..+...++|+++|+||+|+.+..       ....+......   ...+++++||++
T Consensus        79 vD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~~-------~~~~~~~~~~~---~g~~v~~vSA~~  148 (287)
T cd01854          79 VDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDE-------EEELELVEALA---LGYPVLAVSAKT  148 (287)
T ss_pred             CCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCChH-------HHHHHHHHHHh---CCCeEEEEECCC
Confidence            89999999999876 43222 22333445789999999999997531       11112222211   226899999999


Q ss_pred             CCChHHHHHHHHH
Q 027757          200 GLGRDELLLHMSQ  212 (219)
Q Consensus       200 ~~~v~el~~~l~~  212 (219)
                      +.|+++++.+|..
T Consensus       149 g~gi~~L~~~L~~  161 (287)
T cd01854         149 GEGLDELREYLKG  161 (287)
T ss_pred             CccHHHHHhhhcc
Confidence            9999999988753

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12288 GTPase RsgA; Reviewed

Probab=98.48  E-value=1.1e-06  Score=71.40  Aligned_cols=85  Identities=15%  Similarity=0.068  Sum_probs=57.0

Q ss_pred             CccEEEEEEeCCCCCCcccH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          121 SLVGVLLLIDASVPPQKIDL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      .+|.+++|++.....+.... +++..+...++|.++|+||+|+.+...    .....++...+..   ...+++++||++
T Consensus       120 NvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~~~~----~~~~~~~~~~y~~---~g~~v~~vSA~t  192 (347)
T PRK12288        120 NIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEG----RAFVNEQLDIYRN---IGYRVLMVSSHT  192 (347)
T ss_pred             EccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCcHH----HHHHHHHHHHHHh---CCCeEEEEeCCC
Confidence            37999999998754444322 222233456799999999999975421    1123333333322   226899999999


Q ss_pred             CCChHHHHHHHHH
Q 027757          200 GLGRDELLLHMSQ  212 (219)
Q Consensus       200 ~~~v~el~~~l~~  212 (219)
                      +.|+++|+++|..
T Consensus       193 g~GideL~~~L~~  205 (347)
T PRK12288        193 GEGLEELEAALTG  205 (347)
T ss_pred             CcCHHHHHHHHhh
Confidence            9999999998864

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.45  E-value=1.6e-07  Score=75.51  Aligned_cols=65  Identities=29%  Similarity=0.423  Sum_probs=57.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcc
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV  103 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~  103 (219)
                      ..++++|+|-+++||||+||+|..+ ....+.+.+|.|+....+..+..+.|+|.||+.....+..
T Consensus       251 ~sIrvGViG~PNVGKSSvINsL~~~-k~C~vg~~pGvT~smqeV~Ldk~i~llDsPgiv~~~~~~~  315 (435)
T KOG2484|consen  251 TSIRVGIIGYPNVGKSSVINSLKRR-KACNVGNVPGVTRSMQEVKLDKKIRLLDSPGIVPPSIDEK  315 (435)
T ss_pred             cceEeeeecCCCCChhHHHHHHHHh-ccccCCCCccchhhhhheeccCCceeccCCceeecCCCcc
Confidence            3689999999999999999999998 5788999999999999999999999999999876555443

>KOG3859 consensus Septins (P-loop GTPases) [Cell cycle control, cell division, chromosome partitioning]

Probab=98.41  E-value=1.5e-06  Score=67.02  Aligned_cols=132  Identities=18%  Similarity=0.227  Sum_probs=77.1

Q ss_pred             CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCC--CC-----eeEEeeEEEecCeEEEEeCCCCCCCCCCcch-
Q 027757           33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKK--PG-----KTQLINHFLVNKSWYIVDLPGYGFAKAPDVT-  104 (219)
Q Consensus        33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~--~~-----~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~-  104 (219)
                      ...++..++|+.+|.+|.|||||++.|++.++-...++-  +.     .|+......+..+++++||.|++++...... 
T Consensus        36 sv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvrlKLtiv~tvGfGDQinK~~Sy  115 (406)
T KOG3859|consen   36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVRLKLTIVDTVGFGDQINKEDSY  115 (406)
T ss_pred             HHhcCceEEEEEeccCCccHHHHHHHHhccccCCCCCccCCCCceeecchhhhhhcCeeEEEEEEeecccccccCccccc
Confidence            344567899999999999999999999997543322221  11     1222222223347899999999865443221 


Q ss_pred             -------hhhHHHHHHHHhhc--------cCCccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757          105 -------RMDWSSFTKGYFLN--------RESLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       105 -------~~~~~~~~~~~~~~--------~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                             ...|+......+..        ....++|+|.+.++- .....++-.++.+. .++.+|-|+-|.|-...
T Consensus       116 k~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~Ld-skVNIIPvIAKaDtisK  191 (406)
T KOG3859|consen  116 KPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLD-SKVNIIPVIAKADTISK  191 (406)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhccCceEEEEEEecCCCcchhHHHHHHHHHHh-hhhhhHHHHHHhhhhhH
Confidence                   11122222222211        123579999998773 22222222222222 57888999999997653

>cd04178 Nucleostemin_like Nucleostemin-like

Probab=98.40  E-value=1.6e-06  Score=63.67  Aligned_cols=56  Identities=21%  Similarity=0.227  Sum_probs=43.5

Q ss_pred             cEEEEEEeCCCCCCcccHHHHHH--hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          123 VGVLLLIDASVPPQKIDLDCANW--LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       123 d~vi~v~d~~~~~~~~~~~~~~~--~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      |++++|+|+..+.+..+..+.+.  +...+.|+++|+||+|+.+.       +.+..+.+.+...
T Consensus         1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~-------~~l~~~~~~~~~~   58 (172)
T cd04178           1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPK-------ENVEKWLKYLRRE   58 (172)
T ss_pred             CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCH-------HHHHHHHHHHHhh
Confidence            68999999999877777777776  55567999999999999764       3466666666553

Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the

>TIGR02475 CobW cobalamin biosynthesis protein CobW

Probab=98.38  E-value=1e-05  Score=65.76  Aligned_cols=24  Identities=29%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+-.+|.|.-|||||||+|+++..
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~   27 (341)
T TIGR02475         4 IPVTIVTGFLGAGKTTLIRHLLQN   27 (341)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc
Confidence            456889999999999999999864

A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).

>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]

Probab=98.38  E-value=8.9e-07  Score=66.34  Aligned_cols=72  Identities=11%  Similarity=0.126  Sum_probs=38.8

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..++++||||....  +.....++..+.+.    .. .+-+++|++++....... ....+....+ +--+++||.|...
T Consensus        84 ~D~vlIDT~Gr~~~--d~~~~~el~~~~~~----~~-~~~~~LVlsa~~~~~~~~-~~~~~~~~~~-~~~lIlTKlDet~  154 (196)
T PF00448_consen   84 YDLVLIDTAGRSPR--DEELLEELKKLLEA----LN-PDEVHLVLSATMGQEDLE-QALAFYEAFG-IDGLILTKLDETA  154 (196)
T ss_dssp             SSEEEEEE-SSSST--HHHHHHHHHHHHHH----HS-SSEEEEEEEGGGGGHHHH-HHHHHHHHSS-TCEEEEESTTSSS
T ss_pred             CCEEEEecCCcchh--hHHHHHHHHHHhhh----cC-CccceEEEecccChHHHH-HHHHHhhccc-CceEEEEeecCCC
Confidence            36899999997522  22222222233222    22 467999999986433222 2223333233 3466799999764


Q ss_pred             c
Q 027757          165 V  165 (219)
Q Consensus       165 ~  165 (219)
                      .
T Consensus       155 ~  155 (196)
T PF00448_consen  155 R  155 (196)
T ss_dssp             T
T ss_pred             C
Confidence            3

SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....

>TIGR01425 SRP54_euk signal recognition particle protein SRP54

Probab=98.37  E-value=6.8e-06  Score=68.27  Aligned_cols=116  Identities=16%  Similarity=0.043  Sum_probs=64.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc------CcccccccCC----------------CCeeEEeeEE--E------------
Q 027757           39 RPEFAILGRSNVGKSSLINALVR------KKELALTSKK----------------PGKTQLINHF--L------------   82 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~------~~~~~~~~~~----------------~~~t~~~~~~--~------------   82 (219)
                      +..|+++|.+|+||||++..|..      .+ ....+..                .+........  .            
T Consensus       100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~k-V~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~i~~~~l~~~  178 (429)
T TIGR01425       100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFK-PCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVKIASEGVEKF  178 (429)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHCCCC-EEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHHHHHHHHHHH
Confidence            45689999999999999998873      21 1111110                1111110000  0            


Q ss_pred             --ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcc
Q 027757           83 --VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC  160 (219)
Q Consensus        83 --~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  160 (219)
                        .+..++++||||....  +....   ..+.. +.... ..|.+++|+|+.-+...  ....+.+.+.-.+.-+|+||.
T Consensus       179 ~~~~~DvViIDTaGr~~~--d~~lm---~El~~-i~~~~-~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKl  249 (429)
T TIGR01425       179 KKENFDIIIVDTSGRHKQ--EDSLF---EEMLQ-VAEAI-QPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKL  249 (429)
T ss_pred             HhCCCCEEEEECCCCCcc--hHHHH---HHHHH-Hhhhc-CCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECc
Confidence              1347899999995321  11111   22222 11221 25789999999765433  233444444345678999999


Q ss_pred             cccc
Q 027757          161 DKMK  164 (219)
Q Consensus       161 D~~~  164 (219)
                      |...
T Consensus       250 D~~a  253 (429)
T TIGR01425       250 DGHA  253 (429)
T ss_pred             cCCC
Confidence            9754

This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.

>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.35  E-value=5.6e-06  Score=67.70  Aligned_cols=144  Identities=13%  Similarity=0.211  Sum_probs=74.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-----cccccCCC----------------CeeEEeeE-----------EE--ec
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE-----LALTSKKP----------------GKTQLINH-----------FL--VN   84 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~~~~----------------~~t~~~~~-----------~~--~~   84 (219)
                      ...|+++|++|+||||++..|...-.     ....+..+                +.......           ..  .+
T Consensus       241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~~~~  320 (436)
T PRK11889        241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR  320 (436)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHhccC
Confidence            46899999999999999999975310     00001000                00000000           00  02


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..++++||+|.....     ......+ ..++... ..+.+++|+|++-..... ....+.+.. -..--+++||.|-..
T Consensus       321 ~DvVLIDTaGRs~kd-----~~lm~EL-~~~lk~~-~PdevlLVLsATtk~~d~-~~i~~~F~~-~~idglI~TKLDET~  391 (436)
T PRK11889        321 VDYILIDTAGKNYRA-----SETVEEM-IETMGQV-EPDYICLTLSASMKSKDM-IEIITNFKD-IHIDGIVFTKFDETA  391 (436)
T ss_pred             CCEEEEeCccccCcC-----HHHHHHH-HHHHhhc-CCCeEEEEECCccChHHH-HHHHHHhcC-CCCCEEEEEcccCCC
Confidence            478999999964321     1112222 2222221 246789999986433221 233444443 234678899999764


Q ss_pred             cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757          165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      .-      -.+-.+....+      .|+.+++  +|.++++
T Consensus       392 k~------G~iLni~~~~~------lPIsyit--~GQ~VPe  418 (436)
T PRK11889        392 SS------GELLKIPAVSS------APIVLMT--DGQDVKK  418 (436)
T ss_pred             Cc------cHHHHHHHHHC------cCEEEEe--CCCCCCc
Confidence            32      12333333333      5666665  4555544

>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.32  E-value=3e-06  Score=69.26  Aligned_cols=24  Identities=29%  Similarity=0.527  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.++++|++|+||||++..|...
T Consensus       137 g~ii~lvGptGvGKTTtiakLA~~  160 (374)
T PRK14722        137 GGVFALMGPTGVGKTTTTAKLAAR  160 (374)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347889999999999999999864

>PRK01889 GTPase RsgA; Reviewed

Probab=98.31  E-value=4.6e-06  Score=68.22  Aligned_cols=82  Identities=17%  Similarity=0.085  Sum_probs=56.6

Q ss_pred             CCccEEEEEEeCCCCCCccc-HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecC
Q 027757          120 ESLVGVLLLIDASVPPQKID-LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV  198 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~-~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  198 (219)
                      ..+|.+++|+++..+..... .+++..+...+++.++|+||+|+.+..      +   +..+.+... ....+++.+|++
T Consensus       111 ANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~~~------~---~~~~~~~~~-~~g~~Vi~vSa~  180 (356)
T PRK01889        111 ANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCEDA------E---EKIAEVEAL-APGVPVLAVSAL  180 (356)
T ss_pred             EeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCCCH------H---HHHHHHHHh-CCCCcEEEEECC
Confidence            34799999999974443322 244555566889999999999997531      1   112222222 334789999999


Q ss_pred             CCCChHHHHHHHH
Q 027757          199 TGLGRDELLLHMS  211 (219)
Q Consensus       199 ~~~~v~el~~~l~  211 (219)
                      ++.|+++|..+|.
T Consensus       181 ~g~gl~~L~~~L~  193 (356)
T PRK01889        181 DGEGLDVLAAWLS  193 (356)
T ss_pred             CCccHHHHHHHhh
Confidence            9999999999885

>cd03114 ArgK-like The function of this protein family is unkown

Probab=98.29  E-value=3.3e-06  Score=60.43  Aligned_cols=22  Identities=41%  Similarity=0.613  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ++.++|..|+||||++..+...
T Consensus         1 ~i~~~G~~GsGKTt~~~~l~~~   22 (148)
T cd03114           1 VIGITGVPGAGKSTLIDALITA   22 (148)
T ss_pred             CEEEECCCCCcHHHHHHHHHHH
Confidence            3789999999999999988754

The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.

>PRK12727 flagellar biosynthesis regulator FlhF; Provisional

Probab=98.26  E-value=9.9e-06  Score=68.65  Aligned_cols=24  Identities=25%  Similarity=0.477  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.|+|+|++|+||||++..|...
T Consensus       350 G~vIaLVGPtGvGKTTtaakLAa~  373 (559)
T PRK12727        350 GGVIALVGPTGAGKTTTIAKLAQR  373 (559)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999988763

>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt

Probab=98.25  E-value=1.6e-05  Score=58.66  Aligned_cols=69  Identities=13%  Similarity=0.096  Sum_probs=37.5

Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc--ccHHHHHHhccCCCcEEEEEEccccc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK--IDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~--~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ..+++.+.|.....     ...   +....+...-..+.+|.|+|+.+....  ....+..++...+   ++|+||+|+.
T Consensus        86 d~IiIE~sG~a~p~-----~l~---~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD---vIvlnK~D~~  154 (178)
T PF02492_consen   86 DRIIIETSGLADPA-----PLI---LQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQIAFAD---VIVLNKIDLV  154 (178)
T ss_dssp             SEEEEEEECSSGGG-----GHH---HHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHHHCT-S---EEEEE-GGGH
T ss_pred             CEEEECCccccccc-----hhh---hccccccccccccceeEEeccccccccccchhhhhhcchhcC---EEEEeccccC
Confidence            57888998854221     110   011112222225899999999653111  1123344555444   9999999998


Q ss_pred             cc
Q 027757          164 KV  165 (219)
Q Consensus       164 ~~  165 (219)
                      +.
T Consensus       155 ~~  156 (178)
T PF02492_consen  155 SD  156 (178)
T ss_dssp             HH
T ss_pred             Ch
Confidence            76

Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.

>KOG3887 consensus Predicted small GTPase involved in nuclear protein import [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=1.4e-05  Score=60.53  Aligned_cols=119  Identities=18%  Similarity=0.162  Sum_probs=68.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCC-CCCCCCcchhhhHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGY-GFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~-~~~~~~~~~~~~~~~~~~  113 (219)
                      ..++|++||-..+||||+..-++.+ ..+..+-....|..+....+.   -.+..||.||- +.....-.-        .
T Consensus        26 ~kp~ilLMG~rRsGKsSI~KVVFhk-MsPneTlflESTski~~d~is~sfinf~v~dfPGQ~~~Fd~s~D~--------e   96 (347)
T KOG3887|consen   26 MKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTSKITRDHISNSFINFQVWDFPGQMDFFDPSFDY--------E   96 (347)
T ss_pred             CCceEEEEeecccCcchhhheeeec-cCCCceeEeeccCcccHhhhhhhhcceEEeecCCccccCCCccCH--------H
Confidence            4578999999999999998888776 232222111222222111111   25778999993 332222111        2


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKG  168 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~  168 (219)
                      ..+++   +-+.|||+|+.+.-...-..+...+.     ..++.+=+.+.|.|-+..+..
T Consensus        97 ~iF~~---~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~k  153 (347)
T KOG3887|consen   97 MIFRG---VGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFK  153 (347)
T ss_pred             HHHhc---cCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhh
Confidence            33444   78899999987532111111111111     267888899999997765433

>KOG0459 consensus Polypeptide release factor 3 [Translation, ribosomal structure and biogenesis]

Probab=98.22  E-value=1.2e-06  Score=70.74  Aligned_cols=155  Identities=17%  Similarity=0.188  Sum_probs=91.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-----------------------------ccccCCCCeeEEeeE---EEec
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKEL-----------------------------ALTSKKPGKTQLINH---FLVN   84 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-----------------------------~~~~~~~~~t~~~~~---~~~~   84 (219)
                      ....+++++|...+||||+...+....-.                             ....+..+.|.....   ..-.
T Consensus        77 k~hvn~vfighVdagkstigg~il~ltg~Vd~Rt~ekyereake~~rEswylsW~ldtn~EeR~kgKtvEvGrA~FEte~  156 (501)
T KOG0459|consen   77 KEHVNAVFIGHVDAGKSTIGGNILFLTGMVDKRTLEKYEREAKEKNRESWYLSWALDTNGEERDKGKTVEVGRAYFETEN  156 (501)
T ss_pred             CCCceEEEEEEEeccccccCCeeEEEEeeecHHHHHHHHHHHHhhccccceEEEEEcCchhhhhccceeeeeeEEEEecc
Confidence            45789999999999999988877654100                             001111122222211   1123


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-------HHHHHHhcc-CCCcEEEE
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-------LDCANWLGR-NNIPLTFV  156 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-------~~~~~~~~~-~~~p~iiv  156 (219)
                      ..+.++|+||+.             ++......++.++|..++|+.+........       .+.....+. .-...+++
T Consensus       157 ~~ftiLDApGHk-------------~fv~nmI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~gv~~lVv~  223 (501)
T KOG0459|consen  157 KRFTILDAPGHK-------------SFVPNMIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIVL  223 (501)
T ss_pred             eeEEeeccCccc-------------ccchhhccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhccceEEEE
Confidence            478999999974             334555666777899999998864322222       122222222 34678999


Q ss_pred             EEcccccccccCCCchHhHHHHHHHHHhcC-------CCCCCeEEeecCCCCChHHHH
Q 027757          157 FTKCDKMKVAKGRRPDENIKSFQQLIRENY-------PHHPPWIMTSSVTGLGRDELL  207 (219)
Q Consensus       157 ~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~Sa~~~~~v~el~  207 (219)
                      +||+|-...+=   ..+.+++..+.+..++       ..+..++++|..+|.++++..
T Consensus       224 vNKMddPtvnW---s~eRy~E~~~k~~~fLr~~g~n~~~d~~f~p~sg~tG~~~k~~~  278 (501)
T KOG0459|consen  224 INKMDDPTVNW---SNERYEECKEKLQPFLRKLGFNPKPDKHFVPVSGLTGANVKDRT  278 (501)
T ss_pred             EEeccCCccCc---chhhHHHHHHHHHHHHHHhcccCCCCceeeecccccccchhhcc
Confidence            99999653221   1233344333333322       245678999999999988754

>KOG1534 consensus Putative transcription factor FET5 [Transcription]

Probab=98.19  E-value=4.2e-06  Score=62.03  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..-..++|+.|+||||+++.+...
T Consensus         3 ~ya~lV~GpAgSGKSTyC~~~~~h   26 (273)
T KOG1534|consen    3 RYAQLVMGPAGSGKSTYCSSMYEH   26 (273)
T ss_pred             ceeEEEEccCCCCcchHHHHHHHH
Confidence            356789999999999999988743

>KOG0705 consensus GTPase-activating protein Centaurin gamma (contains Ras-like GTPase, PH and ankyrin repeat domains) [Signal transduction mechanisms]

Probab=98.18  E-value=4.7e-06  Score=69.74  Aligned_cols=154  Identities=14%  Similarity=0.144  Sum_probs=96.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCe-EEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKS-WYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...|++|+|..++|||+|+-+++...+.....+..+.-........... +.+.|-.|.. .              ..|.
T Consensus        29 pelk~givg~~~sgktalvhr~ltgty~~~e~~e~~~~kkE~vv~gqs~lLlirdeg~~~-~--------------aQft   93 (749)
T KOG0705|consen   29 PELKLGIVGTSQSGKTALVHRYLTGTYTQDESPEGGRFKKEVVVDGQSHLLLIRDEGGHP-D--------------AQFC   93 (749)
T ss_pred             chhheeeeecccCCceeeeeeeccceeccccCCcCccceeeEEeeccceEeeeecccCCc-h--------------hhhh
Confidence            3689999999999999999988877666655555553333222222222 2233333311 0              1121


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHH-----HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCA-----NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~-----~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .-   +|++|||+...+..+++....+     .+.....+|.++++++.-......+...+.....+..++..     +.
T Consensus        94 ~w---vdavIfvf~~~d~~s~q~v~~l~~~l~~~r~r~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~kr-----cs  165 (749)
T KOG0705|consen   94 QW---VDAVVFVFSVEDEQSFQAVQALAHEMSSYRNISDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKR-----CS  165 (749)
T ss_pred             hh---ccceEEEEEeccccCHHHHHHHHhhcccccccccchHHhhcCcchhhcccccccchHHHHHHHHhcCc-----cc
Confidence            22   7999999999887776553222     12224678999999985444443444444444444443332     78


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +|+.++.+|.++..+|..++...
T Consensus       166 y~et~atyGlnv~rvf~~~~~k~  188 (749)
T KOG0705|consen  166 YYETCATYGLNVERVFQEVAQKI  188 (749)
T ss_pred             eeecchhhhhhHHHHHHHHHHHH
Confidence            99999999999999998886644

>PRK11537 putative GTP-binding protein YjiA; Provisional

Probab=98.17  E-value=7.7e-05  Score=60.10  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+-.+|.|.-|||||||+|+++..
T Consensus         4 ipv~iltGFLGaGKTTll~~ll~~   27 (318)
T PRK11537          4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_pred             cCEEEEEECCCCCHHHHHHHHHhc
Confidence            577889999999999999999865

>KOG2485 consensus Conserved ATP/GTP binding protein [General function prediction only]

Probab=98.16  E-value=5e-06  Score=65.13  Aligned_cols=65  Identities=32%  Similarity=0.452  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC----cccccccCCCCeeEEeeE---EEecCeEEEEeCCCCCCCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRK----KELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~----~~~~~~~~~~~~t~~~~~---~~~~~~~~liDtpg~~~~~~  100 (219)
                      .+..+.+.|+|.||+|||||+|++...    .-.+.+...+|.|+.+..   +.....++++||||+.....
T Consensus       140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P~I  211 (335)
T KOG2485|consen  140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVPSI  211 (335)
T ss_pred             cCCceeEEEEcCCCCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEeccCCceEEecCCCcCCCCC
Confidence            356789999999999999999987643    134567788888887644   33345799999999865433

>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]

Probab=98.15  E-value=0.00018  Score=51.39  Aligned_cols=25  Identities=32%  Similarity=0.469  Sum_probs=22.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...||.|.|+||+||||++..+...
T Consensus         4 ~~mki~ITG~PGvGKtTl~~ki~e~   28 (179)
T COG1618           4 MAMKIFITGRPGVGKTTLVLKIAEK   28 (179)
T ss_pred             cceEEEEeCCCCccHHHHHHHHHHH
Confidence            3579999999999999999998864

>PRK00771 signal recognition particle protein Srp54; Provisional

Probab=98.13  E-value=3e-05  Score=64.91  Aligned_cols=24  Identities=21%  Similarity=0.376  Sum_probs=20.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757           38 DRPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      .+..|+++|.+|+||||++..|..
T Consensus        94 ~p~vI~lvG~~GsGKTTtaakLA~  117 (437)
T PRK00771         94 KPQTIMLVGLQGSGKTTTAAKLAR  117 (437)
T ss_pred             CCeEEEEECCCCCcHHHHHHHHHH
Confidence            355789999999999999988864

>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.10  E-value=3.9e-05  Score=67.92  Aligned_cols=23  Identities=26%  Similarity=0.478  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++++|+.|+||||++..|.+.
T Consensus       186 ~Vi~lVGpnGvGKTTTiaKLA~~  208 (767)
T PRK14723        186 GVLALVGPTGVGKTTTTAKLAAR  208 (767)
T ss_pred             eEEEEECCCCCcHHHHHHHHHhh
Confidence            36899999999999999999875

>KOG2743 consensus Cobalamin synthesis protein [Coenzyme transport and metabolism]

Probab=98.08  E-value=6e-05  Score=58.95  Aligned_cols=128  Identities=16%  Similarity=0.205  Sum_probs=71.7

Q ss_pred             CCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCc---ccccccCCCCeeEEe------------------------eEEEe
Q 027757           31 AKDCPKDDRPEFAILGRSNVGKSSLINALVRKK---ELALTSKKPGKTQLI------------------------NHFLV   83 (219)
Q Consensus        31 ~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~---~~~~~~~~~~~t~~~------------------------~~~~~   83 (219)
                      .+..+....|--+|.|.-|||||||+|.++...   ..+...+..|...++                        -...+
T Consensus        49 ~~~~~~~rIPvtIITGyLGaGKtTLLn~Il~~~hgKRIAVIlNEfGes~die~sl~~~~~gg~lyEewv~L~NGClCCtV  128 (391)
T KOG2743|consen   49 TKSSLGARIPVTIITGYLGAGKTTLLNYILTGQHGKRIAVILNEFGESSDIEKSLAVSQEGGELYEEWVELRNGCLCCTV  128 (391)
T ss_pred             cccCCCCccceEEEEecccCChHHHHHHHHccCCCceEEEEhhhcccchhhhHHHHhccccchHHHHHHHhcCCeEEEEe
Confidence            344555667888999999999999999999653   222222222211100                        00111


Q ss_pred             --------------c--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH-------
Q 027757           84 --------------N--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL-------  140 (219)
Q Consensus        84 --------------~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-------  140 (219)
                                    .  ...+++.|.|+..+     +...-....+..+...-..|++|-|+|+.+.....+.       
T Consensus       129 k~~gvraie~lvqkkGkfD~IllETTGlAnP-----aPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i  203 (391)
T KOG2743|consen  129 KDNGVRAIENLVQKKGKFDHILLETTGLANP-----APIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLI  203 (391)
T ss_pred             cchHHHHHHHHHhcCCCcceEEEeccCCCCc-----HHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccch
Confidence                          1  24688999997532     1222122333444444447999999999852211110       


Q ss_pred             -HHHHHhccCCCcEEEEEEcccccccc
Q 027757          141 -DCANWLGRNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       141 -~~~~~~~~~~~p~iiv~nK~D~~~~~  166 (219)
                       +..+++.   ..--+++||.|+..++
T Consensus       204 ~EA~~QiA---~AD~II~NKtDli~~e  227 (391)
T KOG2743|consen  204 NEATRQIA---LADRIIMNKTDLVSEE  227 (391)
T ss_pred             HHHHHHHh---hhheeeeccccccCHH
Confidence             1112222   2336889999999864

>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional

Probab=98.06  E-value=2.6e-05  Score=64.78  Aligned_cols=24  Identities=25%  Similarity=0.501  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-+++++|+.|+||||++..|.+.
T Consensus       191 g~vi~lvGpnG~GKTTtlakLA~~  214 (420)
T PRK14721        191 GGVYALIGPTGVGKTTTTAKLAAR  214 (420)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            458999999999999999988764

>KOG2484 consensus GTPase [General function prediction only]

Probab=98.04  E-value=4.2e-05  Score=61.89  Aligned_cols=76  Identities=17%  Similarity=0.151  Sum_probs=58.5

Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc--cCCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG--RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                      ......|.+.....+..   +|+||.|+|+.+|++....+.-+++.  ..++..|+|+||+|+.+.       +.++.|.
T Consensus       130 ~~s~kaY~ke~rkvve~---sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPr-------Ev~e~Wl  199 (435)
T KOG2484|consen  130 EESKKAYDKEFRKVVEA---SDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPR-------EVVEKWL  199 (435)
T ss_pred             hhhHHHHHHHHHHHHhh---hheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCH-------HHHHHHH
Confidence            33444555544444444   89999999999999888877777774  345889999999999875       6889999


Q ss_pred             HHHHhcCC
Q 027757          180 QLIRENYP  187 (219)
Q Consensus       180 ~~~~~~~~  187 (219)
                      .++...++
T Consensus       200 ~YLr~~~p  207 (435)
T KOG2484|consen  200 VYLRREGP  207 (435)
T ss_pred             HHHHhhCC
Confidence            99987665

>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=98.03  E-value=9.1e-05  Score=62.02  Aligned_cols=23  Identities=26%  Similarity=0.499  Sum_probs=19.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++++|++|+||||++-.|...
T Consensus       222 ~~i~~vGptGvGKTTt~~kLA~~  244 (424)
T PRK05703        222 GVVALVGPTGVGKTTTLAKLAAR  244 (424)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999988877653

>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]

Probab=98.02  E-value=4.7e-05  Score=62.24  Aligned_cols=116  Identities=20%  Similarity=0.189  Sum_probs=63.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccc-ccccCCCC-eeEEeeE--------------------------------EEec
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKEL-ALTSKKPG-KTQLINH--------------------------------FLVN   84 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~-~~~~~~~~-~t~~~~~--------------------------------~~~~   84 (219)
                      ...|+++||+|+||||-+-.|... +. .......+ .|.+...                                ...+
T Consensus       203 ~~vi~LVGPTGVGKTTTlAKLAar-~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~  281 (407)
T COG1419         203 KRVIALVGPTGVGKTTTLAKLAAR-YVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD  281 (407)
T ss_pred             CcEEEEECCCCCcHHHHHHHHHHH-HHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHhhc
Confidence            567999999999999999988876 33 11111111 1111000                                0113


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      .+++|+||.|....  +..-.    +-.+.++..... .-+.+|++++...... .++...+....+ -=+++||.|-..
T Consensus       282 ~d~ILVDTaGrs~~--D~~~i----~el~~~~~~~~~-i~~~Lvlsat~K~~dl-kei~~~f~~~~i-~~~I~TKlDET~  352 (407)
T COG1419         282 CDVILVDTAGRSQY--DKEKI----EELKELIDVSHS-IEVYLVLSATTKYEDL-KEIIKQFSLFPI-DGLIFTKLDETT  352 (407)
T ss_pred             CCEEEEeCCCCCcc--CHHHH----HHHHHHHhcccc-ceEEEEEecCcchHHH-HHHHHHhccCCc-ceeEEEcccccC
Confidence            47899999997532  22222    223344443322 3467888887533222 234444443332 356799999664

>PRK10867 signal recognition particle protein; Provisional

Probab=98.00  E-value=0.00012  Score=61.18  Aligned_cols=23  Identities=17%  Similarity=0.356  Sum_probs=18.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 027757           39 RPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      +..|+++|++|+||||++-.|..
T Consensus       100 p~vI~~vG~~GsGKTTtaakLA~  122 (433)
T PRK10867        100 PTVIMMVGLQGAGKTTTAGKLAK  122 (433)
T ss_pred             CEEEEEECCCCCcHHHHHHHHHH
Confidence            45788999999999997766653

>PRK12724 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.98  E-value=4e-05  Score=63.41  Aligned_cols=119  Identities=18%  Similarity=0.160  Sum_probs=61.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccc------ccccC----------------CCCeeEEee----E-----EEecCeEE
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKEL------ALTSK----------------KPGKTQLIN----H-----FLVNKSWY   88 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~------~~~~~----------------~~~~t~~~~----~-----~~~~~~~~   88 (219)
                      ..++++|++|+||||++..|......      ...+.                ..+......    .     ...+..++
T Consensus       224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~D~V  303 (432)
T PRK12724        224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGSELI  303 (432)
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCCCEE
Confidence            45889999999999999999853101      00110                001100000    0     00134789


Q ss_pred             EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ++||||.....  ...-..+..+....  ......-+++|+|++...... .......... -+--+++||.|-..
T Consensus       304 LIDTaGr~~rd--~~~l~eL~~~~~~~--~~~~~~e~~LVLsAt~~~~~~-~~~~~~f~~~-~~~glIlTKLDEt~  373 (432)
T PRK12724        304 LIDTAGYSHRN--LEQLERMQSFYSCF--GEKDSVENLLVLSSTSSYHHT-LTVLKAYESL-NYRRILLTKLDEAD  373 (432)
T ss_pred             EEeCCCCCccC--HHHHHHHHHHHHhh--cCCCCCeEEEEEeCCCCHHHH-HHHHHHhcCC-CCCEEEEEcccCCC
Confidence            99999974322  22222222222211  001124578999998653322 2333333322 34578899999654

>PRK12726 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.96  E-value=0.00019  Score=58.75  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 027757           39 RPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ...++++|+.|+||||++..+..
T Consensus       206 ~~ii~lvGptGvGKTTt~akLA~  228 (407)
T PRK12726        206 HRIISLIGQTGVGKTTTLVKLGW  228 (407)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHH
Confidence            45689999999999999998875

>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes

Probab=97.96  E-value=3.6e-05  Score=56.48  Aligned_cols=71  Identities=18%  Similarity=0.034  Sum_probs=38.4

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHh-ccCCCcEEEEEEccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWL-GRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~  163 (219)
                      ..++++||||....  +......+..+    .. ....|.+++|+|+......  .+....+ ...+ ..-+++||.|..
T Consensus        83 ~d~viiDt~g~~~~--~~~~l~~l~~l----~~-~~~~~~~~lVv~~~~~~~~--~~~~~~~~~~~~-~~~viltk~D~~  152 (173)
T cd03115          83 FDVVIVDTAGRLQI--DENLMEELKKI----KR-VVKPDEVLLVVDAMTGQDA--VNQAKAFNEALG-ITGVILTKLDGD  152 (173)
T ss_pred             CCEEEEECcccchh--hHHHHHHHHHH----Hh-hcCCCeEEEEEECCCChHH--HHHHHHHHhhCC-CCEEEEECCcCC
Confidence            35899999996421  11111111111    11 1226899999998654322  2222222 2334 467888999976


Q ss_pred             cc
Q 027757          164 KV  165 (219)
Q Consensus       164 ~~  165 (219)
                      ..
T Consensus       153 ~~  154 (173)
T cd03115         153 AR  154 (173)
T ss_pred             CC
Confidence            54

SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.

>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily

Probab=97.95  E-value=5.5e-05  Score=53.49  Aligned_cols=105  Identities=12%  Similarity=0.100  Sum_probs=57.6

Q ss_pred             EEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCc
Q 027757           43 AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESL  122 (219)
Q Consensus        43 ~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  122 (219)
                      ..-|.+|+||||+.-.+... .........-.+.+...-..+..++++|+|+....            .....+..   +
T Consensus         4 ~~~~kgg~gkt~~~~~~a~~-~~~~~~~~~~vd~D~~~~~~~yd~VIiD~p~~~~~------------~~~~~l~~---a   67 (139)
T cd02038           4 VTSGKGGVGKTNISANLALA-LAKLGKRVLLLDADLGLANLDYDYIIIDTGAGISD------------NVLDFFLA---A   67 (139)
T ss_pred             EEcCCCCCcHHHHHHHHHHH-HHHCCCcEEEEECCCCCCCCCCCEEEEECCCCCCH------------HHHHHHHh---C
Confidence            34577899999998877664 11110011111111111112268899999974210            11223333   7


Q ss_pred             cEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEccccc
Q 027757          123 VGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKM  163 (219)
Q Consensus       123 d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~  163 (219)
                      |.++++++.+..........++++..  ...++.+|+|+++..
T Consensus        68 D~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~  110 (139)
T cd02038          68 DEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP  110 (139)
T ss_pred             CeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence            99999999875332222334444432  346788999999743

It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.

>KOG1424 consensus Predicted GTP-binding protein MMR1 [General function prediction only]

Probab=97.95  E-value=4.7e-05  Score=63.48  Aligned_cols=79  Identities=16%  Similarity=0.188  Sum_probs=62.2

Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          111 FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +|+..++-.+.+|+||.++|+.+|.-+....+-.++++  .++..++++||.||++.       +....|.+.+...+  
T Consensus       164 ~WRQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~-------~qr~aWa~YF~~~n--  234 (562)
T KOG1424|consen  164 IWRQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPP-------EQRVAWAEYFRQNN--  234 (562)
T ss_pred             HHHHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCH-------HHHHHHHHHHHhcC--
Confidence            44444444555799999999999988877777788886  45788999999999986       56778888877644  


Q ss_pred             CCCeEEeecCC
Q 027757          189 HPPWIMTSSVT  199 (219)
Q Consensus       189 ~~~~~~~Sa~~  199 (219)
                       +++++.||..
T Consensus       235 -i~~vf~SA~~  244 (562)
T KOG1424|consen  235 -IPVVFFSALA  244 (562)
T ss_pred             -ceEEEEeccc
Confidence             7899999987

>KOG2423 consensus Nucleolar GTPase [General function prediction only]

Probab=97.94  E-value=0.00012  Score=59.37  Aligned_cols=97  Identities=16%  Similarity=0.201  Sum_probs=71.4

Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .+|...|.-...+|++|-|+|+.+|.......+-.+++.  .++.+++|+|||||.+.       .-...|...+...++
T Consensus       202 RIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPt-------wvt~~Wv~~lSkeyP  274 (572)
T KOG2423|consen  202 RIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPT-------WVTAKWVRHLSKEYP  274 (572)
T ss_pred             HHHHHHHHhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeeccccccH-------HHHHHHHHHHhhhCc
Confidence            345555555666899999999999988777666777775  66889999999999875       566778887776543


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .  -.|-.|..+..|-..|+..|.++.+
T Consensus       275 T--iAfHAsi~nsfGKgalI~llRQf~k  300 (572)
T KOG2423|consen  275 T--IAFHASINNSFGKGALIQLLRQFAK  300 (572)
T ss_pred             c--eeeehhhcCccchhHHHHHHHHHHh
Confidence            2  2355565666777778777776654

>TIGR00959 ffh signal recognition particle protein

Probab=97.94  E-value=0.00022  Score=59.64  Aligned_cols=71  Identities=18%  Similarity=0.055  Sum_probs=37.7

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..++++||||...  .+.....+...+...    . ..|.+++|+|+..+.  ........+...=...=+|+||.|-..
T Consensus       183 ~DvVIIDTaGr~~--~d~~l~~eL~~i~~~----~-~p~e~lLVvda~tgq--~~~~~a~~f~~~v~i~giIlTKlD~~~  253 (428)
T TIGR00959       183 FDVVIVDTAGRLQ--IDEELMEELAAIKEI----L-NPDEILLVVDAMTGQ--DAVNTAKTFNERLGLTGVVLTKLDGDA  253 (428)
T ss_pred             CCEEEEeCCCccc--cCHHHHHHHHHHHHh----h-CCceEEEEEeccchH--HHHHHHHHHHhhCCCCEEEEeCccCcc
Confidence            3689999999642  222222222222221    1 257899999987432  112222322221123567799999543

This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.

>COG1161 Predicted GTPases [General function prediction only]

Probab=97.92  E-value=0.00013  Score=59.03  Aligned_cols=91  Identities=15%  Similarity=0.126  Sum_probs=68.2

Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +.++........+|+|+.|+|+.+|.+.....+-+++..  .|.++|+||+|+.+.       ...+.|.+.+....  .
T Consensus        23 k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~~--k~~i~vlNK~DL~~~-------~~~~~W~~~~~~~~--~   91 (322)
T COG1161          23 KAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVKE--KPKLLVLNKADLAPK-------EVTKKWKKYFKKEE--G   91 (322)
T ss_pred             HHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHcc--CCcEEEEehhhcCCH-------HHHHHHHHHHHhcC--C
Confidence            344444444555899999999999988887777777774  455999999999986       45788888877655  3


Q ss_pred             CCeEEeecCCCCChHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~  211 (219)
                      ...+.++++++.+...+...+.
T Consensus        92 ~~~~~v~~~~~~~~~~i~~~~~  113 (322)
T COG1161          92 IKPIFVSAKSRQGGKKIRKALE  113 (322)
T ss_pred             CccEEEEeecccCccchHHHHH
Confidence            5678899998888777774333

>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.91  E-value=0.00012  Score=57.41  Aligned_cols=145  Identities=14%  Similarity=0.231  Sum_probs=74.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-----cccccC----------------CCCeeEEeeE-----------E--Ee
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE-----LALTSK----------------KPGKTQLINH-----------F--LV   83 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~~----------------~~~~t~~~~~-----------~--~~   83 (219)
                      ...+++++|++|+||||++..+...-.     ....+.                ..+.......           .  ..
T Consensus        74 ~~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~  153 (270)
T PRK06731         74 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA  153 (270)
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcC
Confidence            346999999999999999998875410     000000                0010000000           0  01


Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      +..++++||||....  +....   +.+. .+++..+ .+-+++|++++...... ....+.+.. -.+--+++||.|-.
T Consensus       154 ~~D~ViIDt~Gr~~~--~~~~l---~el~-~~~~~~~-~~~~~LVl~a~~~~~d~-~~~~~~f~~-~~~~~~I~TKlDet  224 (270)
T PRK06731        154 RVDYILIDTAGKNYR--ASETV---EEMI-ETMGQVE-PDYICLTLSASMKSKDM-IEIITNFKD-IHIDGIVFTKFDET  224 (270)
T ss_pred             CCCEEEEECCCCCcC--CHHHH---HHHH-HHHhhhC-CCeEEEEEcCccCHHHH-HHHHHHhCC-CCCCEEEEEeecCC
Confidence            347899999996422  11112   2222 2222222 46789999987432222 233344443 23467889999976


Q ss_pred             ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757          164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      ..-+      .+-.+....+      .|+.+++  +|.++++
T Consensus       225 ~~~G------~~l~~~~~~~------~Pi~~it--~Gq~vp~  252 (270)
T PRK06731        225 ASSG------ELLKIPAVSS------APIVLMT--DGQDVKK  252 (270)
T ss_pred             CCcc------HHHHHHHHHC------cCEEEEe--CCCCCCc
Confidence            4321      2223333322      5777776  4555553

>PRK01889 GTPase RsgA; Reviewed

Probab=97.89  E-value=2.7e-05  Score=63.76  Aligned_cols=57  Identities=32%  Similarity=0.398  Sum_probs=37.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCeeEEeeEEEecCeEEEEeCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKTQLINHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t~~~~~~~~~~~~~liDtpg~~~   97 (219)
                      -+++++|.+|+|||||+|.+++.. .....       ....++.............++||||+..
T Consensus       196 ~~~~lvG~sgvGKStLin~L~g~~-~~~~G~i~~~~~~g~~tt~~~~l~~l~~~~~l~DtpG~~~  259 (356)
T PRK01889        196 KTVALLGSSGVGKSTLVNALLGEE-VQKTGAVREDDSKGRHTTTHRELHPLPSGGLLIDTPGMRE  259 (356)
T ss_pred             CEEEEECCCCccHHHHHHHHHHhc-ccceeeEEECCCCCcchhhhccEEEecCCCeecCCCchhh
Confidence            479999999999999999999863 22111       1112333333344444557889999853

>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A

Probab=97.89  E-value=0.00032  Score=57.66  Aligned_cols=164  Identities=15%  Similarity=0.231  Sum_probs=87.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--------------cCCCCeeE---Ee-------eEEEe----cCeEE
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALT--------------SKKPGKTQ---LI-------NHFLV----NKSWY   88 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--------------~~~~~~t~---~~-------~~~~~----~~~~~   88 (219)
                      ++.+=|+++||.-+|||||+.+|...-.++..              .+..|.|.   .+       .....    ..++.
T Consensus        15 ~GdIYiGVVGPVRTGKSTFIKRFMel~VlPnI~d~~~reRa~DELPQS~aGktImTTEPKFiP~eAv~I~l~~~~~~kVR   94 (492)
T PF09547_consen   15 GGDIYIGVVGPVRTGKSTFIKRFMELLVLPNIEDEYERERARDELPQSGAGKTIMTTEPKFIPNEAVEITLDDGIKVKVR   94 (492)
T ss_pred             CCceEEEeecCcccCchhHHHHHHHHhcCCCCCCHHHHHHhhhcCCcCCCCCceeccCCcccCCcceEEEecCCceEEEE
Confidence            56678999999999999999999865222111              11111111   11       11112    22789


Q ss_pred             EEeCCCCCC----------------CCCCcchhhhHHHH----HHHHhhccCCccEEEEEEeCCCCCCc------ccHHH
Q 027757           89 IVDLPGYGF----------------AKAPDVTRMDWSSF----TKGYFLNRESLVGVLLLIDASVPPQK------IDLDC  142 (219)
Q Consensus        89 liDtpg~~~----------------~~~~~~~~~~~~~~----~~~~~~~~~~~d~vi~v~d~~~~~~~------~~~~~  142 (219)
                      ++||.|+-.                +.|... ..-|..-    ++...+.+ ..-++++--|-+-..-.      .+.+.
T Consensus        95 LiDCVGy~V~gA~Gy~e~~~pRmV~TPWfd~-eIPF~eAAeiGT~KVI~dH-STIGiVVTTDGSi~dipRe~Y~eAEerv  172 (492)
T PF09547_consen   95 LIDCVGYMVEGALGYEEEEGPRMVKTPWFDE-EIPFEEAAEIGTRKVITDH-STIGIVVTTDGSITDIPRENYVEAEERV  172 (492)
T ss_pred             EEeecceeecCccccccCCCceeecCCCCCC-CCCHHHHHhhcccceeccC-CceeEEEecCCCccCCChHHHHHHHHHH
Confidence            999999721                122211 1111100    01111111 11255555555421111      11356


Q ss_pred             HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          143 ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       143 ~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ...++.-++|+++++|-.+=..        .+..++...+...++  ++++++++.+ -.-+++...|.+.
T Consensus       173 I~ELk~igKPFvillNs~~P~s--------~et~~L~~eL~ekY~--vpVlpvnc~~-l~~~DI~~Il~~v  232 (492)
T PF09547_consen  173 IEELKEIGKPFVILLNSTKPYS--------EETQELAEELEEKYD--VPVLPVNCEQ-LREEDITRILEEV  232 (492)
T ss_pred             HHHHHHhCCCEEEEEeCCCCCC--------HHHHHHHHHHHHHhC--CcEEEeehHH-cCHHHHHHHHHHH
Confidence            6777788999999999987433        345666666766666  5777777654 2344444444443

It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.

>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated

Probab=97.88  E-value=0.00047  Score=58.36  Aligned_cols=23  Identities=30%  Similarity=0.564  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++++|+.|+||||++..|.+.
T Consensus       257 ~Vi~LvGpnGvGKTTTiaKLA~~  279 (484)
T PRK06995        257 GVFALMGPTGVGKTTTTAKLAAR  279 (484)
T ss_pred             cEEEEECCCCccHHHHHHHHHHH
Confidence            46999999999999999999864

>COG1162 Predicted GTPases [General function prediction only]

Probab=97.87  E-value=6.1e-05  Score=59.33  Aligned_cols=83  Identities=16%  Similarity=0.147  Sum_probs=56.5

Q ss_pred             ccEEEEEEeCCCCCCcccH--HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          122 LVGVLLLIDASVPPQKIDL--DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      .|-.++|+.+.+|.-...+  +++-.....++..++++||+|+.+.+....     ++....+.   ....+++.+|+++
T Consensus        80 ~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~~~~~-----~~~~~~y~---~~gy~v~~~s~~~  151 (301)
T COG1162          80 NDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDEEAAV-----KELLREYE---DIGYPVLFVSAKN  151 (301)
T ss_pred             cceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcchHHHH-----HHHHHHHH---hCCeeEEEecCcC
Confidence            4667888888877554432  344444557899999999999997642211     12222222   1237899999999


Q ss_pred             CCChHHHHHHHHH
Q 027757          200 GLGRDELLLHMSQ  212 (219)
Q Consensus       200 ~~~v~el~~~l~~  212 (219)
                      +.|++++.+++..
T Consensus       152 ~~~~~~l~~~l~~  164 (301)
T COG1162         152 GDGLEELAELLAG  164 (301)
T ss_pred             cccHHHHHHHhcC
Confidence            9999999988754

>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]

Probab=97.85  E-value=3e-05  Score=58.62  Aligned_cols=43  Identities=14%  Similarity=0.126  Sum_probs=30.6

Q ss_pred             CccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEccccc
Q 027757          121 SLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDKM  163 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~  163 (219)
                      .+|.+|.|+|++...-..-.++.+...+.+ .++.+|+||.|-.
T Consensus       155 ~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~  198 (255)
T COG3640         155 GVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE  198 (255)
T ss_pred             CCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence            389999999998643333234444445567 8999999999844

>PRK13695 putative NTPase; Provisional

Probab=97.85  E-value=0.00065  Score=49.88  Aligned_cols=75  Identities=13%  Similarity=0.033  Sum_probs=42.8

Q ss_pred             CccEEEEEEe---CCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757          121 SLVGVLLLID---ASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       121 ~~d~vi~v~d---~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  197 (219)
                      .++.  +++|   ..+.......+.+..+.+...|++++.||...             ..+.+.+...-.  ..++.+  
T Consensus        96 ~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~~-------------~~~~~~i~~~~~--~~i~~~--  156 (174)
T PRK13695         96 EADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRSV-------------HPFVQEIKSRPG--GRVYEL--  156 (174)
T ss_pred             CCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchhh-------------HHHHHHHhccCC--cEEEEE--
Confidence            3564  6888   33333333334444444678899999998532             222333332211  355555  


Q ss_pred             CCCCChHHHHHHHHHHHh
Q 027757          198 VTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       198 ~~~~~v~el~~~l~~~~~  215 (219)
                       +..|-+++...+.+.++
T Consensus       157 -~~~~r~~~~~~~~~~~~  173 (174)
T PRK13695        157 -TPENRDSLPFEILNRLK  173 (174)
T ss_pred             -cchhhhhHHHHHHHHHh
Confidence             56678889888877654

>PRK12723 flagellar biosynthesis regulator FlhF; Provisional

Probab=97.85  E-value=0.00021  Score=59.02  Aligned_cols=116  Identities=16%  Similarity=0.159  Sum_probs=61.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc---------ccccc-C---------------CCCeeEEeeE----------EEe
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE---------LALTS-K---------------KPGKTQLINH----------FLV   83 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~---------~~~~~-~---------------~~~~t~~~~~----------~~~   83 (219)
                      ...|+++|++|+||||.+..|...-.         ....+ .               ..+.......          ...
T Consensus       174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~~~  253 (388)
T PRK12723        174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSK  253 (388)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHHhC
Confidence            45789999999999999988875310         00000 0               0011100000          011


Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC--CcEEEEEEccc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN--IPLTFVFTKCD  161 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D  161 (219)
                      +..++++||+|....  +   .+....+ ..++......+-+++|+|++......    .+.+..+.  -+--+++||.|
T Consensus       254 ~~DlVLIDTaGr~~~--~---~~~l~el-~~~l~~~~~~~e~~LVlsat~~~~~~----~~~~~~~~~~~~~~~I~TKlD  323 (388)
T PRK12723        254 DFDLVLVDTIGKSPK--D---FMKLAEM-KELLNACGRDAEFHLAVSSTTKTSDV----KEIFHQFSPFSYKTVIFTKLD  323 (388)
T ss_pred             CCCEEEEcCCCCCcc--C---HHHHHHH-HHHHHhcCCCCeEEEEEcCCCCHHHH----HHHHHHhcCCCCCEEEEEecc
Confidence            347899999996532  1   1112222 22223222123589999998653322    23333322  25678899999


Q ss_pred             ccc
Q 027757          162 KMK  164 (219)
Q Consensus       162 ~~~  164 (219)
                      -..
T Consensus       324 et~  326 (388)
T PRK12723        324 ETT  326 (388)
T ss_pred             CCC
Confidence            654

>KOG0082 consensus G-protein alpha subunit (small G protein superfamily) [Cell cycle control, cell division, chromosome partitioning; Signal transduction mechanisms]

Probab=97.78  E-value=0.00062  Score=55.05  Aligned_cols=117  Identities=12%  Similarity=0.062  Sum_probs=63.4

Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-----------HHHHHHhcc----CC
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-----------LDCANWLGR----NN  150 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-----------~~~~~~~~~----~~  150 (219)
                      .+.++|.+|          |...+.-|-+.+.+   ++++||+++.++......           ..+.+.+-.    .+
T Consensus       196 ~f~~~DvGG----------QRseRrKWihcFe~---v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~  262 (354)
T KOG0082|consen  196 KFRMFDVGG----------QRSERKKWIHCFED---VTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN  262 (354)
T ss_pred             ceEEEeCCC----------cHHHhhhHHHhhcC---CCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc
Confidence            567777777          22223444555666   899999999996322221           112222221    57


Q ss_pred             CcEEEEEEcccccccc--------------cCCCchHhHHHHHHHHHhcCC---CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          151 IPLTFVFTKCDKMKVA--------------KGRRPDENIKSFQQLIRENYP---HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       151 ~p~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .++++.+||.|+-...              +.....+...-+...+.....   ..+-+..+.|-.-.+++.+|+.+.+.
T Consensus       263 tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~  342 (354)
T KOG0082|consen  263 TSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDT  342 (354)
T ss_pred             CcEEEEeecHHHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHH
Confidence            8999999999974321              111111111122222222221   12234455677777888888888765


Q ss_pred             Hh
Q 027757          214 RN  215 (219)
Q Consensus       214 ~~  215 (219)
                      ..
T Consensus       343 Ii  344 (354)
T KOG0082|consen  343 II  344 (354)
T ss_pred             HH
Confidence            43

>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1)

Probab=97.69  E-value=0.00017  Score=42.08  Aligned_cols=40  Identities=23%  Similarity=0.144  Sum_probs=23.0

Q ss_pred             ccEEEEEEeCCCCCCcccH---HHHHHhcc-C-CCcEEEEEEccc
Q 027757          122 LVGVLLLIDASVPPQKIDL---DCANWLGR-N-NIPLTFVFTKCD  161 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~---~~~~~~~~-~-~~p~iiv~nK~D  161 (219)
                      .++++|++|++......-.   .+.+.++. . ++|+++|+||+|
T Consensus        14 ~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D   58 (58)
T PF06858_consen   14 ADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID   58 (58)
T ss_dssp             -SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred             cceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence            4789999999975444322   33333443 3 899999999998

The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.

>KOG0446 consensus Vacuolar sorting protein VPS1, dynamin, and related proteins [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=97.67  E-value=6.1e-05  Score=66.07  Aligned_cols=127  Identities=21%  Similarity=0.184  Sum_probs=75.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC----eeE---------E--------------------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPG----KTQ---------L--------------------------   77 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~----~t~---------~--------------------------   77 (219)
                      ..-|.|+++|..++||||.++.+.|..+.+......+    .-.         .                          
T Consensus        27 i~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~e  106 (657)
T KOG0446|consen   27 IPLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSE  106 (657)
T ss_pred             ccCCceEEecCCCCcchhHHHHhhccccccccccceecccceeecccccCCcccchhccccccccccCCHHHHHHHHHhh
Confidence            3468999999999999999999999755442211110    000         0                          


Q ss_pred             --------------eeEEEe----cCeEEEEeCCCCCCC---CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC--
Q 027757           78 --------------INHFLV----NKSWYIVDLPGYGFA---KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP--  134 (219)
Q Consensus        78 --------------~~~~~~----~~~~~liDtpg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~--  134 (219)
                                    ......    -..++++|+||+..-   .........+..+...|...   ...+|+.+.+.+-  
T Consensus       107 t~~~~g~~kgiS~~pI~L~i~s~~v~~lTLvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~---~~~iILav~~an~d~  183 (657)
T KOG0446|consen  107 TDRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEK---PNRIILAVTPANSDI  183 (657)
T ss_pred             HHHhcCCCCCcCCCCceeeecCCCCchhhhcCCCCCcccccCCCCccHHHHHHHHHHHhccc---cchhhhhccchhhhh
Confidence                          000000    114689999997542   23334555666777777766   5667777766542  


Q ss_pred             CCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757          135 PQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       135 ~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  166 (219)
                      .+...+.+.+.+...+...+.|++|.|+.+..
T Consensus       184 ats~alkiarevDp~g~RTigvitK~DlmdkG  215 (657)
T KOG0446|consen  184 ATSPALVVAREVDPGGSRTLEVITKFDFMDKG  215 (657)
T ss_pred             hcCHHHHHHHhhCCCccchhHHhhhHHhhhcC
Confidence            12222344444444666777778888776543

>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal

Probab=97.62  E-value=0.0011  Score=51.67  Aligned_cols=90  Identities=16%  Similarity=0.203  Sum_probs=45.5

Q ss_pred             EEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc------cccCCCchHhHHHHHHHHHhc---CCCCCCeEEe
Q 027757          125 VLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK------VAKGRRPDENIKSFQQLIREN---YPHHPPWIMT  195 (219)
Q Consensus       125 vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~  195 (219)
                      ..+++|..........++...+...+.+..++.-.++...      ........+.++.+...+..-   +.+..+.+.+
T Consensus        69 ~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~~~~~~~i~~l~~r~e~p~~~~~wd~~~~~v  148 (249)
T TIGR03574        69 YSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGEKIPNEVIKDMYEKFDEPGTKYSWDLPDLTI  148 (249)
T ss_pred             CeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCCCCCHHHHHHHHHhhCCCCCCCCccCceEEe
Confidence            4577777653322222344445556677777776666321      111112223333443333221   1123466777


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q 027757          196 SSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~  214 (219)
                      ........+++.+.|.+..
T Consensus       149 d~~~~~~~~ei~~~i~~~~  167 (249)
T TIGR03574       149 DTTKKIDYNEILEEILEIS  167 (249)
T ss_pred             cCCCCCCHHHHHHHHHHHh
Confidence            6644457788888887654

Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.

>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A

Probab=97.53  E-value=8.4e-05  Score=51.02  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|++||||||+++.|...
T Consensus         1 vI~I~G~~gsGKST~a~~La~~   22 (121)
T PF13207_consen    1 VIIISGPPGSGKSTLAKELAER   22 (121)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999985

...

>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster

Probab=97.52  E-value=0.00029  Score=47.32  Aligned_cols=98  Identities=13%  Similarity=0.106  Sum_probs=51.7

Q ss_pred             EEE-cCCCCCHHHHHHHHhcCccccc-ccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           43 AIL-GRSNVGKSSLINALVRKKELAL-TSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        43 ~i~-G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      +++ +..|+||||+.-.|... .... ..+..-.+.+..   ....++++|||+...            ......+..  
T Consensus         3 ~~~~~kgg~gkt~~~~~la~~-~~~~~~~~~~l~d~d~~---~~~D~IIiDtpp~~~------------~~~~~~l~~--   64 (106)
T cd03111           3 AFIGAKGGVGATTLAANLAVA-LAKEAGRRVLLVDLDLQ---FGDDYVVVDLGRSLD------------EVSLAALDQ--   64 (106)
T ss_pred             EEECCCCCCcHHHHHHHHHHH-HHhcCCCcEEEEECCCC---CCCCEEEEeCCCCcC------------HHHHHHHHH--
Confidence            443 45889999988777654 1111 111111111111   122789999998421            111223334  


Q ss_pred             CccEEEEEEeCCCCCCcccHHHHHHhccC----CCcEEEEEEc
Q 027757          121 SLVGVLLLIDASVPPQKIDLDCANWLGRN----NIPLTFVFTK  159 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~----~~p~iiv~nK  159 (219)
                       +|.++++++.+...-..-.+..+++.+.    ...+.+|+|+
T Consensus        65 -aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr  106 (106)
T cd03111          65 -ADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR  106 (106)
T ss_pred             -cCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence             7999999988754333223444444432    3456777775

The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.

>KOG0469 consensus Elongation factor 2 [Translation, ribosomal structure and biogenesis]

Probab=97.50  E-value=0.00035  Score=58.43  Aligned_cols=131  Identities=20%  Similarity=0.200  Sum_probs=80.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc-CC---------------CCeeEEeeEEEe-----------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS-KK---------------PGKTQLINHFLV-----------------   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-~~---------------~~~t~~~~~~~~-----------------   83 (219)
                      .+..+.-++.....|||||...|..+-  ...+ ..               .+.|........                 
T Consensus        17 ~NiRNmSVIAHVDHGKSTLTDsLV~kA--gIis~akaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d   94 (842)
T KOG0469|consen   17 KNIRNMSVIAHVDHGKSTLTDSLVQKA--GIISAAKAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGD   94 (842)
T ss_pred             cccccceEEEEecCCcchhhHHHHHhh--ceeeecccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCC
Confidence            445678888999999999999998652  1111 11               111111111110                 


Q ss_pred             --cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccc
Q 027757           84 --NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD  161 (219)
Q Consensus        84 --~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  161 (219)
                        +.-+.++|.||+...          .+..-..++-   .|+.++|+|.-++..-+...++++.-..++.-++++||.|
T Consensus        95 ~~~FLiNLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDcv~GvCVQTETVLrQA~~ERIkPvlv~NK~D  161 (842)
T KOG0469|consen   95 GNGFLINLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDCVSGVCVQTETVLRQAIAERIKPVLVMNKMD  161 (842)
T ss_pred             CcceeEEeccCCCcccc----------hhhhhheeEe---ccCcEEEEEccCceEechHHHHHHHHHhhccceEEeehhh
Confidence              113678899996433          2222333333   7999999999998888877778877777888889999999


Q ss_pred             ccccccCCCchHhHHHHHHHH
Q 027757          162 KMKVAKGRRPDENIKSFQQLI  182 (219)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~  182 (219)
                      ..--+-....++..+.+.+..
T Consensus       162 RAlLELq~~~EeLyqtf~R~V  182 (842)
T KOG0469|consen  162 RALLELQLSQEELYQTFQRIV  182 (842)
T ss_pred             HHHHhhcCCHHHHHHHHHHHH
Confidence            654322222233344444443

>KOG1533 consensus Predicted GTPase [General function prediction only]

Probab=97.50  E-value=0.00012  Score=55.37  Aligned_cols=21  Identities=24%  Similarity=0.363  Sum_probs=17.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~   60 (219)
                      +-.+|+||||+||||.++-..
T Consensus         3 fgqvVIGPPgSGKsTYc~g~~   23 (290)
T KOG1533|consen    3 FGQVVIGPPGSGKSTYCNGMS   23 (290)
T ss_pred             cceEEEcCCCCCccchhhhHH
Confidence            456899999999999988544

>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport

Probab=97.46  E-value=0.0009  Score=46.32  Aligned_cols=21  Identities=29%  Similarity=0.468  Sum_probs=19.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |++.|++|+|||++++.+...
T Consensus         1 ill~G~~G~GKT~l~~~la~~   21 (132)
T PF00004_consen    1 ILLHGPPGTGKTTLARALAQY   21 (132)
T ss_dssp             EEEESSTTSSHHHHHHHHHHH
T ss_pred             CEEECcCCCCeeHHHHHHHhh
Confidence            689999999999999999996

Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....

>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []

Probab=97.46  E-value=0.00029  Score=55.47  Aligned_cols=151  Identities=14%  Similarity=0.138  Sum_probs=70.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCC--CCCCCC-Ccchh----hhHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG--YGFAKA-PDVTR----MDWSSFT  112 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg--~~~~~~-~~~~~----~~~~~~~  112 (219)
                      +-|+++|-|++||||+.+.|... +..                .+..+.+++...  +....+ +...+    ..+.+..
T Consensus         2 pLiil~G~P~SGKTt~a~~L~~~-~~~----------------~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v   64 (270)
T PF08433_consen    2 PLIILCGLPCSGKTTRAKELKKY-LEE----------------KGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAV   64 (270)
T ss_dssp             -EEEEE--TTSSHHHHHHHHHHH-HHH----------------TT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCcHHHHHHHHHHH-HHh----------------cCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHH
Confidence            45899999999999999999985 222                111222333211  111111 11111    1112222


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc----ccC----CCchHhHHHHHHHHHh
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV----AKG----RRPDENIKSFQQLIRE  184 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~----~~~----~~~~~~~~~~~~~~~~  184 (219)
                      +..+..    + .|+++|..+.-....-++....+..+.+..+|...+++...    ..+    .+.++.+..+...+..
T Consensus        65 ~r~ls~----~-~iVI~Dd~nYiKg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~  139 (270)
T PF08433_consen   65 ERALSK----D-TIVILDDNNYIKGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEE  139 (270)
T ss_dssp             HHHHTT------SEEEE-S---SHHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---
T ss_pred             HHhhcc----C-eEEEEeCCchHHHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcC
Confidence            222222    3 46678887765555445666666789999999999885321    112    2455666666666644


Q ss_pred             c---CCCCCCeEEee-cCCCCChHHHHHHHHH
Q 027757          185 N---YPHHPPWIMTS-SVTGLGRDELLLHMSQ  212 (219)
Q Consensus       185 ~---~~~~~~~~~~S-a~~~~~v~el~~~l~~  212 (219)
                      =   ..++.|.|.+. .-....++++++.|..
T Consensus       140 P~~~nrWD~plf~i~~~~~~~~~~~I~~~l~~  171 (270)
T PF08433_consen  140 PDPKNRWDSPLFTIDSSDEELPLEEIWNALFE  171 (270)
T ss_dssp             TTSS-GGGS-SEEEE-TTS---HHHHHHHHHH
T ss_pred             CCCCCCccCCeEEEecCCCCCCHHHHHHHHHh
Confidence            1   12345677777 5556678888888743

The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.

>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]

Probab=97.43  E-value=0.00012  Score=53.49  Aligned_cols=24  Identities=42%  Similarity=0.504  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      --+++|+|++|+|||||+|.+.|=
T Consensus        25 ge~vAi~GpSGaGKSTLLnLIAGF   48 (231)
T COG3840          25 GEIVAILGPSGAGKSTLLNLIAGF   48 (231)
T ss_pred             CcEEEEECCCCccHHHHHHHHHhc
Confidence            347999999999999999999983

>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=97.41  E-value=0.00012  Score=55.92  Aligned_cols=22  Identities=41%  Similarity=0.517  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+|++|+|||||++.+.|-
T Consensus        31 fvsilGpSGcGKSTLLriiAGL   52 (248)
T COG1116          31 FVAILGPSGCGKSTLLRLIAGL   52 (248)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            5899999999999999999985

>PRK14737 gmk guanylate kinase; Provisional

Probab=97.41  E-value=0.00014  Score=54.03  Aligned_cols=38  Identities=24%  Similarity=0.232  Sum_probs=26.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL   77 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~   77 (219)
                      ..-|+|+|++|+|||||+++|+.. ........+.||+.
T Consensus         4 ~~~ivl~GpsG~GK~tl~~~l~~~-~~~~~~~v~~TTR~   41 (186)
T PRK14737          4 PKLFIISSVAGGGKSTIIQALLEE-HPDFLFSISCTTRA   41 (186)
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhc-CCccccccCccCCC
Confidence            345899999999999999999986 33222333444443

>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]

Probab=97.40  E-value=7.8e-05  Score=54.52  Aligned_cols=24  Identities=38%  Similarity=0.548  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK   63 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~   63 (219)
                      .-++|.||+|+||||++++|....
T Consensus         5 ~l~vlsgPSG~GKsTl~k~L~~~~   28 (191)
T COG0194           5 LLIVLSGPSGVGKSTLVKALLEDD   28 (191)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhhc
Confidence            358899999999999999999973

>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]

Probab=97.38  E-value=0.00014  Score=55.20  Aligned_cols=22  Identities=45%  Similarity=0.489  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+|++|||||||+|.+-+-
T Consensus        33 ~vaI~GpSGSGKSTLLniig~l   54 (226)
T COG1136          33 FVAIVGPSGSGKSTLLNLLGGL   54 (226)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            5899999999999999999885

>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]

Probab=97.37  E-value=0.00015  Score=53.50  Aligned_cols=22  Identities=41%  Similarity=0.635  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|+|||||||+...|...
T Consensus         2 riiilG~pGaGK~T~A~~La~~   23 (178)
T COG0563           2 RILILGPPGAGKSTLAKKLAKK   23 (178)
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999986

>PF13555 AAA_29: P-loop containing region of AAA domain

Probab=97.37  E-value=0.0002  Score=42.83  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+|.|+.|+||||++.++.--
T Consensus        25 ~tli~G~nGsGKSTllDAi~~~   46 (62)
T PF13555_consen   25 VTLITGPNGSGKSTLLDAIQTV   46 (62)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999988753

>PRK07261 topology modulation protein; Provisional

Probab=97.36  E-value=0.00016  Score=53.00  Aligned_cols=22  Identities=41%  Similarity=0.599  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|++|+|||||...|...
T Consensus         2 ri~i~G~~GsGKSTla~~l~~~   23 (171)
T PRK07261          2 KIAIIGYSGSGKSTLARKLSQH   23 (171)
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            7999999999999999998764

>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2

Probab=97.36  E-value=0.00024  Score=50.11  Aligned_cols=21  Identities=38%  Similarity=0.657  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|+|++|+|||||++.|.+.
T Consensus         2 i~i~GpsGsGKstl~~~L~~~   22 (137)
T cd00071           2 IVLSGPSGVGKSTLLKRLLEE   22 (137)
T ss_pred             EEEECCCCCCHHHHHHHHHhc
Confidence            689999999999999999985

7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.

>PRK08118 topology modulation protein; Reviewed

Probab=97.34  E-value=0.00019  Score=52.40  Aligned_cols=23  Identities=30%  Similarity=0.489  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+|+|+|++|+|||||...|...
T Consensus         2 ~rI~I~G~~GsGKSTlak~L~~~   24 (167)
T PRK08118          2 KKIILIGSGGSGKSTLARQLGEK   24 (167)
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            48999999999999999999976

>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.31  E-value=0.0012  Score=53.54  Aligned_cols=26  Identities=15%  Similarity=0.207  Sum_probs=21.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+--|.++|-.|+||||.|-.+...
T Consensus        99 ~kpsVimfVGLqG~GKTTtc~KlA~y  124 (483)
T KOG0780|consen   99 GKPSVIMFVGLQGSGKTTTCTKLAYY  124 (483)
T ss_pred             CCCcEEEEEeccCCCcceeHHHHHHH
Confidence            44556889999999999999888753

>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars

Probab=97.28  E-value=0.00026  Score=43.59  Aligned_cols=21  Identities=38%  Similarity=0.544  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |++.|++|+||||+.++|...
T Consensus         2 i~i~G~~gsGKst~~~~l~~~   22 (69)
T cd02019           2 IAITGGSGSGKSTVAKKLAEQ   22 (69)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999985

Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.

>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems

Probab=97.25  E-value=0.00027  Score=49.57  Aligned_cols=23  Identities=39%  Similarity=0.517  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+++.
T Consensus        12 ~~~~i~G~nGsGKStLl~~l~g~   34 (137)
T PF00005_consen   12 EIVAIVGPNGSGKSTLLKALAGL   34 (137)
T ss_dssp             SEEEEEESTTSSHHHHHHHHTTS
T ss_pred             CEEEEEccCCCccccceeeeccc
Confidence            36899999999999999999996

ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....

>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain

Probab=97.22  E-value=0.0016  Score=42.32  Aligned_cols=71  Identities=20%  Similarity=0.228  Sum_probs=42.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCC
Q 027757           42 FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES  121 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~  121 (219)
                      +++.|..|+||||+...+...  ... .....       ...+ .+.++|+++.......         .......   .
T Consensus         2 ~~~~g~~G~Gktt~~~~l~~~--l~~-~g~~v-------~~~~-d~iivD~~~~~~~~~~---------~~~~~~~---~   58 (99)
T cd01983           2 IVVTGKGGVGKTTLAANLAAA--LAK-RGKRV-------LLID-DYVLIDTPPGLGLLVL---------LCLLALL---A   58 (99)
T ss_pred             EEEECCCCCCHHHHHHHHHHH--HHH-CCCeE-------EEEC-CEEEEeCCCCccchhh---------hhhhhhh---h
Confidence            678899999999999998875  221 11110       1111 7889999985321100         0012222   2


Q ss_pred             ccEEEEEEeCCCCC
Q 027757          122 LVGVLLLIDASVPP  135 (219)
Q Consensus       122 ~d~vi~v~d~~~~~  135 (219)
                      +|.++++++.....
T Consensus        59 ~~~vi~v~~~~~~~   72 (99)
T cd01983          59 ADLVIIVTTPEALA   72 (99)
T ss_pred             CCEEEEecCCchhh
Confidence            78899999887543

Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.

>TIGR03263 guanyl_kin guanylate kinase

Probab=97.20  E-value=0.00051  Score=50.61  Aligned_cols=22  Identities=45%  Similarity=0.653  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|+|++|+|||||++.|.+.
T Consensus         3 ii~l~G~~GsGKsTl~~~L~~~   24 (180)
T TIGR03263         3 LIVISGPSGVGKSTLVKALLEE   24 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHcc
Confidence            5899999999999999999985

Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.

>KOG4181 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.20  E-value=0.0019  Score=51.75  Aligned_cols=24  Identities=29%  Similarity=0.506  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK   63 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~   63 (219)
                      .-|.++|.-|+|||||++.|.++.
T Consensus       189 ~VIgvlG~QgsGKStllslLaans  212 (491)
T KOG4181|consen  189 TVIGVLGGQGSGKSTLLSLLAANS  212 (491)
T ss_pred             eEEEeecCCCccHHHHHHHHhccC
Confidence            468899999999999999999874

>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B

Probab=97.20  E-value=0.00031  Score=49.58  Aligned_cols=21  Identities=29%  Similarity=0.531  Sum_probs=19.4

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+++|++|+|||||+..+...
T Consensus         2 ii~~G~pgsGKSt~a~~l~~~   22 (143)
T PF13671_consen    2 IILCGPPGSGKSTLAKRLAKR   22 (143)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999865

...

>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell

Probab=97.18  E-value=0.0017  Score=47.63  Aligned_cols=64  Identities=9%  Similarity=-0.005  Sum_probs=39.4

Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMK  164 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~  164 (219)
                      .++++|||+-...            .....+..   +|.+|++++++...-..-....+++...+. ...+|+|++|...
T Consensus        64 d~viiD~p~~~~~------------~~~~~l~~---ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~~  128 (179)
T cd02036          64 DYILIDSPAGIER------------GFITAIAP---ADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPDM  128 (179)
T ss_pred             CEEEEECCCCCcH------------HHHHHHHh---CCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCcccc
Confidence            7899999873211            11222333   799999998876433322344555555443 4679999998653

The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.

>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A

Probab=97.17  E-value=0.00036  Score=49.38  Aligned_cols=23  Identities=35%  Similarity=0.702  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.|.|+|+.|+|||||+..|+..
T Consensus         1 pvv~VvG~~~sGKTTl~~~Li~~   23 (140)
T PF03205_consen    1 PVVQVVGPKNSGKTTLIRKLINE   23 (140)
T ss_dssp             -EEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999885

>PF13521 AAA_28: AAA domain; PDB: 1LW7_A

Probab=97.14  E-value=0.00027  Score=51.34  Aligned_cols=22  Identities=36%  Similarity=0.628  Sum_probs=18.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ||+|.|.+|+|||||++.|...
T Consensus         1 rI~i~G~~stGKTTL~~~L~~~   22 (163)
T PF13521_consen    1 RIVITGGPSTGKTTLIEALAAR   22 (163)
T ss_dssp             -EEEE--TTSHHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHc
Confidence            7999999999999999999975

>PRK14738 gmk guanylate kinase; Provisional

Probab=97.11  E-value=0.0006  Score=51.55  Aligned_cols=24  Identities=25%  Similarity=0.374  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++|+|||||+++|...
T Consensus        13 ~~~ivi~GpsG~GK~tl~~~L~~~   36 (206)
T PRK14738         13 PLLVVISGPSGVGKDAVLARMRER   36 (206)
T ss_pred             CeEEEEECcCCCCHHHHHHHHHhc
Confidence            345788999999999999999864

>PRK10078 ribose 1,5-bisphosphokinase; Provisional

Probab=97.09  E-value=0.00045  Score=51.36  Aligned_cols=22  Identities=36%  Similarity=0.533  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+|||||++.|.+.
T Consensus         4 ~i~l~G~sGsGKsTl~~~l~~~   25 (186)
T PRK10078          4 LIWLMGPSGSGKDSLLAALRQR   25 (186)
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            6899999999999999999875

>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]

Probab=97.09  E-value=0.00051  Score=51.57  Aligned_cols=23  Identities=35%  Similarity=0.460  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      =.++|+||+|+|||||+..+.+-
T Consensus        29 evv~iiGpSGSGKSTlLRclN~L   51 (240)
T COG1126          29 EVVVIIGPSGSGKSTLLRCLNGL   51 (240)
T ss_pred             CEEEEECCCCCCHHHHHHHHHCC
Confidence            37899999999999999999885

>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation

Probab=97.09  E-value=0.0019  Score=42.96  Aligned_cols=71  Identities=21%  Similarity=0.167  Sum_probs=41.3

Q ss_pred             EEEEc-CCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           42 FAILG-RSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        42 v~i~G-~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      |.+.| ..|+||||+.-.+...  ... ......-.+..   ....++++|+|+...            ......+..  
T Consensus         2 i~~~~~kgG~Gkst~~~~la~~--~~~-~~~~vl~~d~d---~~~d~viiD~p~~~~------------~~~~~~l~~--   61 (104)
T cd02042           2 IAVANQKGGVGKTTTAVNLAAA--LAR-RGKRVLLIDLD---PQYDYIIIDTPPSLG------------LLTRNALAA--   61 (104)
T ss_pred             EEEEeCCCCcCHHHHHHHHHHH--HHh-CCCcEEEEeCC---CCCCEEEEeCcCCCC------------HHHHHHHHH--
Confidence            56666 4799999998888764  222 11111111111   115789999998431            111233333  


Q ss_pred             CccEEEEEEeCCC
Q 027757          121 SLVGVLLLIDASV  133 (219)
Q Consensus       121 ~~d~vi~v~d~~~  133 (219)
                       +|.++++++.+.
T Consensus        62 -ad~viv~~~~~~   73 (104)
T cd02042          62 -ADLVLIPVQPSP   73 (104)
T ss_pred             -CCEEEEeccCCH
Confidence             799999998764

ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.

>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis

Probab=97.08  E-value=0.0005  Score=46.06  Aligned_cols=21  Identities=33%  Similarity=0.474  Sum_probs=19.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~   60 (219)
                      -.++|+|++|+|||||++.+.
T Consensus        16 e~v~I~GpSGsGKSTLl~~l~   36 (107)
T cd00820          16 VGVLITGDSGIGKTELALELI   36 (107)
T ss_pred             EEEEEEcCCCCCHHHHHHHhh
Confidence            358999999999999999986

It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural

>PRK14530 adenylate kinase; Provisional

Probab=97.07  E-value=0.00058  Score=51.99  Aligned_cols=24  Identities=25%  Similarity=0.523  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+|++|+||||+.+.|...
T Consensus         3 ~~~I~i~G~pGsGKsT~~~~La~~   26 (215)
T PRK14530          3 QPRILLLGAPGAGKGTQSSNLAEE   26 (215)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999864

>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C

Probab=97.06  E-value=0.0005  Score=47.42  Aligned_cols=21  Identities=24%  Similarity=0.480  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|.|.+|+||||+++.|...
T Consensus         1 I~i~G~~GsGKtTia~~L~~~   21 (129)
T PF13238_consen    1 IGISGIPGSGKTTIAKELAER   21 (129)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999986

...

>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]

Probab=97.05  E-value=0.00051  Score=48.40  Aligned_cols=26  Identities=35%  Similarity=0.630  Sum_probs=23.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|.|.||+|||||.+++...
T Consensus         5 r~~PNILvtGTPG~GKstl~~~lae~   30 (176)
T KOG3347|consen    5 RERPNILVTGTPGTGKSTLAERLAEK   30 (176)
T ss_pred             hcCCCEEEeCCCCCCchhHHHHHHHH
Confidence            45789999999999999999999865

>PRK06217 hypothetical protein; Validated

Probab=97.04  E-value=0.00057  Score=50.64  Aligned_cols=22  Identities=32%  Similarity=0.447  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|.+|+||||+..+|...
T Consensus         3 ~I~i~G~~GsGKSTla~~L~~~   24 (183)
T PRK06217          3 RIHITGASGSGTTTLGAALAER   24 (183)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999976

>TIGR00235 udk uridine kinase

Probab=97.03  E-value=0.0006  Score=51.57  Aligned_cols=24  Identities=21%  Similarity=0.270  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++|+|||||++.+.+.
T Consensus         6 g~vi~I~G~sGsGKSTl~~~l~~~   29 (207)
T TIGR00235         6 GIIIGIGGGSGSGKTTVARKIYEQ   29 (207)
T ss_pred             eEEEEEECCCCCCHHHHHHHHHHH
Confidence            356899999999999999999975

Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below

>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN

Probab=97.02  E-value=0.00054  Score=50.48  Aligned_cols=22  Identities=23%  Similarity=0.407  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|||||||++.|...
T Consensus         3 ~~~i~G~sGsGKttl~~~l~~~   24 (179)
T TIGR02322         3 LIYVVGPSGAGKDTLLDYARAR   24 (179)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.

>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]

Probab=97.02  E-value=0.00053  Score=55.32  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++++||+|||||||++.+.|-
T Consensus        31 f~vllGPSGcGKSTlLr~IAGL   52 (338)
T COG3839          31 FVVLLGPSGCGKSTLLRMIAGL   52 (338)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            4889999999999999999986

>PRK08233 hypothetical protein; Provisional

Probab=96.99  E-value=0.00075  Score=49.69  Aligned_cols=23  Identities=30%  Similarity=0.338  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|.+|+|||||.++|...
T Consensus         4 ~iI~I~G~~GsGKtTla~~L~~~   26 (182)
T PRK08233          4 KIITIAAVSGGGKTTLTERLTHK   26 (182)
T ss_pred             eEEEEECCCCCCHHHHHHHHHhh
Confidence            56889999999999999999985

>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.99  E-value=0.00062  Score=50.44  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+++|++|+|||||+|.+.|-
T Consensus        33 ~vv~lGpSGcGKTTLLnl~AGf   54 (259)
T COG4525          33 LVVVLGPSGCGKTTLLNLIAGF   54 (259)
T ss_pred             EEEEEcCCCccHHHHHHHHhcC
Confidence            5889999999999999999983

>smart00382 AAA ATPases associated with a variety of cellular activities

Probab=96.99  E-value=0.00086  Score=46.49  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|+|++|+||||++..+...
T Consensus         3 ~~~~l~G~~G~GKTtl~~~l~~~   25 (148)
T smart00382        3 EVILIVGPPGSGKTTLARALARE   25 (148)
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            57899999999999999999986

AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.

>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids

Probab=96.99  E-value=0.00064  Score=50.10  Aligned_cols=24  Identities=21%  Similarity=0.421  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      --.++|+|+.|+|||||++.+.|.
T Consensus        25 Ge~~~l~G~nGsGKSTLl~~l~Gl   48 (177)
T cd03222          25 GEVIGIVGPNGTGKTTAVKILAGQ   48 (177)
T ss_pred             CCEEEEECCCCChHHHHHHHHHcC
Confidence            347999999999999999999995

RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.

>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional

Probab=96.99  E-value=0.00083  Score=49.14  Aligned_cols=25  Identities=32%  Similarity=0.453  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+-+.|+|.+|+|||||++++...
T Consensus         5 ~~~ii~ivG~sgsGKTTLi~~li~~   29 (173)
T PRK10751          5 MIPLLAIAAWSGTGKTTLLKKLIPA   29 (173)
T ss_pred             CceEEEEECCCCChHHHHHHHHHHH
Confidence            3457899999999999999999985

>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily

Probab=96.98  E-value=0.00077  Score=49.91  Aligned_cols=23  Identities=22%  Similarity=0.299  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 027757           39 RPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      .+.|+++|++|+||||+++.+..
T Consensus         3 ~~ii~i~G~~GsGKsTl~~~l~~   25 (188)
T TIGR01360         3 CKIIFIVGGPGSGKGTQCEKIVE   25 (188)
T ss_pred             CcEEEEECCCCCCHHHHHHHHHH
Confidence            46799999999999999999984

Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.

>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins

Probab=96.98  E-value=0.0038  Score=47.58  Aligned_cols=98  Identities=16%  Similarity=0.166  Sum_probs=52.3

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEE
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFT  158 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~n  158 (219)
                      ..++++||.|...            .+....+..   +|.||+=.-.+..+-..-.+..+++.      ..++|.-+++|
T Consensus        84 ~d~VlvDleG~as------------~~~~~aia~---sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~T  148 (231)
T PF07015_consen   84 FDFVLVDLEGGAS------------ELNDYAIAR---SDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFT  148 (231)
T ss_pred             CCEEEEeCCCCCc------------hhHHHHHHH---CCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEe
Confidence            3689999999642            122333333   78777655544322222223334443      36789999999


Q ss_pred             cccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHH
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLL  208 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~  208 (219)
                      ++.-...       ........++..    ..|+|.+.-.+...+.+++.
T Consensus       149 r~~~~~~-------~~~~~~~~e~~~----~lpvl~t~l~eR~Af~~m~~  187 (231)
T PF07015_consen  149 RVPAARL-------TRAQRIISEQLE----SLPVLDTELHERDAFRAMFS  187 (231)
T ss_pred             cCCcchh-------hHHHHHHHHHHh----cCCccccccccHHHHHHHHH
Confidence            9873311       112222222211    15777777666555555544

In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].

>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases

Probab=96.97  E-value=0.00073  Score=50.24  Aligned_cols=24  Identities=38%  Similarity=0.569  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.++|+|++|+|||||++.+++.
T Consensus        25 g~~i~I~G~tGSGKTTll~aL~~~   48 (186)
T cd01130          25 RKNILISGGTGSGKTTLLNALLAF   48 (186)
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347999999999999999999985

The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.

>PRK05480 uridine/cytidine kinase; Provisional

Probab=96.96  E-value=0.00074  Score=51.13  Aligned_cols=25  Identities=20%  Similarity=0.327  Sum_probs=22.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....|+|.|++|+|||||++.|.+.
T Consensus         5 ~~~iI~I~G~sGsGKTTl~~~l~~~   29 (209)
T PRK05480          5 KPIIIGIAGGSGSGKTTVASTIYEE   29 (209)
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999985

>KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]

Probab=96.95  E-value=0.0052  Score=58.04  Aligned_cols=23  Identities=35%  Similarity=0.546  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||+.+++|.
T Consensus       548 ~lvaVvG~vGsGKSSLL~AiLGE  570 (1381)
T KOG0054|consen  548 QLVAVVGPVGSGKSSLLSAILGE  570 (1381)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999999996

>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2

Probab=96.95  E-value=0.00067  Score=50.89  Aligned_cols=21  Identities=24%  Similarity=0.540  Sum_probs=19.6

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|.|++|+|||||++.|.+.
T Consensus         2 igi~G~~GsGKSTl~~~l~~~   22 (198)
T cd02023           2 IGIAGGSGSGKTTVAEEIIEQ   22 (198)
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            789999999999999999885

7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.

>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.94  E-value=0.0091  Score=49.46  Aligned_cols=26  Identities=15%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+..|+++|--|+||||.+-.|...
T Consensus        98 ~~P~vImmvGLQGsGKTTt~~KLA~~  123 (451)
T COG0541          98 KPPTVILMVGLQGSGKTTTAGKLAKY  123 (451)
T ss_pred             CCCeEEEEEeccCCChHhHHHHHHHH
Confidence            34567999999999999998877753

>PRK03839 putative kinase; Provisional

Probab=96.94  E-value=0.00075  Score=49.81  Aligned_cols=22  Identities=36%  Similarity=0.517  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|++|+||||+..+|...
T Consensus         2 ~I~l~G~pGsGKsT~~~~La~~   23 (180)
T PRK03839          2 IIAITGTPGVGKTTVSKLLAEK   23 (180)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6999999999999999999876

>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion

Probab=96.93  E-value=0.00083  Score=49.45  Aligned_cols=22  Identities=32%  Similarity=0.359  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 027757           40 PEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~   61 (219)
                      -.++|+|+.|+|||||++.+++
T Consensus        22 ~~~~l~G~nG~GKSTLl~~il~   43 (176)
T cd03238          22 VLVVVTGVSGSGKSTLVNEGLY   43 (176)
T ss_pred             CEEEEECCCCCCHHHHHHHHhh
Confidence            4799999999999999998863

Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.

>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.93  E-value=0.00081  Score=50.92  Aligned_cols=23  Identities=30%  Similarity=0.355  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        28 ~~~~l~G~nGsGKSTLl~~l~G~   50 (211)
T cd03225          28 EFVLIVGPNGSGKSTLLRLLNGL   50 (211)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36899999999999999999995

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein

Probab=96.92  E-value=0.00082  Score=51.10  Aligned_cols=23  Identities=22%  Similarity=0.424  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        30 e~~~i~G~nGsGKSTLl~~l~Gl   52 (216)
T TIGR00960        30 EMVFLVGHSGAGKSTFLKLILGI   52 (216)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47999999999999999999995

>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE)

Probab=96.91  E-value=0.00085  Score=51.07  Aligned_cols=23  Identities=43%  Similarity=0.466  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        31 ~~~~l~G~nGsGKSTLl~~i~Gl   53 (218)
T cd03255          31 EFVAIVGPSGSGKSTLLNILGGL   53 (218)
T ss_pred             CEEEEEcCCCCCHHHHHHHHhCC
Confidence            37999999999999999999996

They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.

>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules

Probab=96.91  E-value=0.00085  Score=51.73  Aligned_cols=23  Identities=39%  Similarity=0.549  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        27 e~~~l~G~nGsGKSTLl~~l~G~   49 (235)
T cd03261          27 EILAIIGPSGSGKSTLLRLIVGL   49 (235)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            36999999999999999999995

The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota

Probab=96.91  E-value=0.00087  Score=50.56  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        27 e~~~i~G~nGsGKSTLl~~l~Gl   49 (205)
T cd03226          27 EIIALTGKNGAGKTTLAKILAGL   49 (205)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999999995

The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.

>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]

Probab=96.90  E-value=0.004  Score=49.81  Aligned_cols=151  Identities=18%  Similarity=0.129  Sum_probs=77.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccc-------------------------------cccCCCCeeEEeeE------
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELA-------------------------------LTSKKPGKTQLINH------   80 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~-------------------------------~~~~~~~~t~~~~~------   80 (219)
                      .+.-++++|--|+||||-+-.|...- ..                               .+....|.+.....      
T Consensus       138 ~p~Vil~vGVNG~GKTTTIaKLA~~l-~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~  216 (340)
T COG0552         138 KPFVILFVGVNGVGKTTTIAKLAKYL-KQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA  216 (340)
T ss_pred             CcEEEEEEecCCCchHhHHHHHHHHH-HHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcHHHHHHHHHH
Confidence            36678999999999999998887541 10                               00000111110000      


Q ss_pred             -EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC-CccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEE
Q 027757           81 -FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE-SLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFT  158 (219)
Q Consensus        81 -~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~-~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n  158 (219)
                       ...+..++++||.|-.....  ....+..++.+-.-.... ..+-+++++|++-+....  ...+.+.+.-.-.-+++|
T Consensus       217 Akar~~DvvliDTAGRLhnk~--nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqnal--~QAk~F~eav~l~GiIlT  292 (340)
T COG0552         217 AKARGIDVVLIDTAGRLHNKK--NLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNAL--SQAKIFNEAVGLDGIILT  292 (340)
T ss_pred             HHHcCCCEEEEeCcccccCch--hHHHHHHHHHHHhccccCCCCceEEEEEEcccChhHH--HHHHHHHHhcCCceEEEE
Confidence             01134789999999532322  222222333332111110 123488888998765442  223334432223467899


Q ss_pred             cccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHH
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL  207 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~  207 (219)
                      |+|-....+      .+-.+.+.++      .|+.++-  -|.++++|.
T Consensus       293 KlDgtAKGG------~il~I~~~l~------~PI~fiG--vGE~~~DL~  327 (340)
T COG0552         293 KLDGTAKGG------IILSIAYELG------IPIKFIG--VGEGYDDLR  327 (340)
T ss_pred             ecccCCCcc------eeeeHHHHhC------CCEEEEe--CCCChhhcc
Confidence            999543322      2233444444      5888875  345555553

>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway

Probab=96.89  E-value=0.00074  Score=51.62  Aligned_cols=21  Identities=33%  Similarity=0.389  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|.|++|||||||++.|.+.
T Consensus         2 igI~G~sGSGKTTla~~L~~~   22 (220)
T cd02025           2 IGIAGSVAVGKSTTARVLQAL   22 (220)
T ss_pred             EEeeCCCCCCHHHHHHHHHHH
Confidence            789999999999999999985

The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.

>cd01131 PilT Pilus retraction ATPase PilT

Probab=96.88  E-value=0.00083  Score=50.48  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+|++|+||||+++++++.
T Consensus         3 lilI~GptGSGKTTll~~ll~~   24 (198)
T cd01131           3 LVLVTGPTGSGKSTTLAAMIDY   24 (198)
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4789999999999999998875

PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.

>TIGR01166 cbiO cobalt transport protein ATP-binding subunit

Probab=96.87  E-value=0.00098  Score=49.64  Aligned_cols=22  Identities=36%  Similarity=0.484  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|.
T Consensus        20 ~~~i~G~nGsGKSTLl~~i~G~   41 (190)
T TIGR01166        20 VLALLGANGAGKSTLLLHLNGL   41 (190)
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.

>TIGR02673 FtsE cell division ATP-binding protein FtsE

Probab=96.87  E-value=0.00098  Score=50.59  Aligned_cols=23  Identities=26%  Similarity=0.377  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        29 ~~~~l~G~nGsGKSTLl~~i~Gl   51 (214)
T TIGR02673        29 EFLFLTGPSGAGKTTLLKLLYGA   51 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999995

This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.

>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component

Probab=96.86  E-value=0.0009  Score=50.69  Aligned_cols=22  Identities=27%  Similarity=0.578  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        27 ~~~i~G~nGsGKSTLl~~l~Gl   48 (211)
T cd03264          27 MYGLLGPNGAGKTTLMRILATL   48 (211)
T ss_pred             cEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999985

The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group

Probab=96.86  E-value=0.001  Score=50.19  Aligned_cols=23  Identities=39%  Similarity=0.563  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        25 e~~~i~G~nGsGKSTLl~~l~G~   47 (206)
T TIGR03608        25 KMYAIIGESGSGKSTLLNIIGLL   47 (206)
T ss_pred             cEEEEECCCCCCHHHHHHHHhcC
Confidence            36999999999999999999996

A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.

>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane

Probab=96.86  E-value=0.001  Score=50.52  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        28 ~~~~i~G~nGsGKSTLl~~l~G~   50 (214)
T cd03292          28 EFVFLVGPSGAGKSTLLKLIYKE   50 (214)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37899999999999999999995

The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.

>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth

Probab=96.86  E-value=0.001  Score=47.27  Aligned_cols=23  Identities=26%  Similarity=0.602  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        27 e~~~i~G~nGsGKStLl~~l~G~   49 (144)
T cd03221          27 DRIGLVGRNGAGKSTLLKLIAGE   49 (144)
T ss_pred             CEEEEECCCCCCHHHHHHHHcCC
Confidence            36899999999999999999996

EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.

>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment

Probab=96.85  E-value=0.0011  Score=48.94  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        27 ~~~~i~G~nGsGKSTLl~~l~G~   49 (178)
T cd03229          27 EIVALLGPSGSGKSTLLRCIAGL   49 (178)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37899999999999999999985

ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin

Probab=96.85  E-value=0.001  Score=50.69  Aligned_cols=23  Identities=30%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|.
T Consensus        27 e~~~i~G~nGsGKSTLl~~i~G~   49 (220)
T cd03265          27 EIFGLLGPNGAGKTTTIKMLTTL   49 (220)
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            47899999999999999999995

In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.

>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]

Probab=96.84  E-value=0.00098  Score=50.70  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+|++|||||||+..+.+.
T Consensus        32 ~VaiIG~SGaGKSTLLR~lngl   53 (258)
T COG3638          32 MVAIIGPSGAGKSTLLRSLNGL   53 (258)
T ss_pred             EEEEECCCCCcHHHHHHHHhcc
Confidence            6899999999999999999984

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	219
3pqc_A	195	Crystal Structure Of Thermotoga Maritima Ribosome B		9e-38
1sul_A	195	Crystal Structure Of The Apo-Ysxc Length = 195		1e-28
4dhe_A	223	Crystal Structure Of A Probable Gtp-Binding Protein		1e-26
1pui_A	210	Structure Of Engb Gtpase Length = 210		8e-26
1mky_A	439	Structural Analysis Of The Domain Interactions In D		2e-05
2cxx_A	190	Crystal Structure Of A Probable Gtp-binding Protein		7e-05
3iev_A	308	Crystal Structure Of Era In Complex With Mggnp And		8e-05
3r9w_A	307	Crystal Structure Of Era In Complex With Mggdpnp An		8e-05
4dcs_A	456	Crystal Structure Of B. Subtilis Enga In Complex Wi		2e-04
2dyk_A	161	Crystal Structure Of N-Terminal Gtp-Binding Domain		7e-04

>pdb|3PQC|A Chain A, Crystal Structure Of Thermotoga Maritima Ribosome Biogenesis Gtp- Binding Protein Engb (YsxcYIHA) IN COMPLEX WITH GDP Length = 195

Iteration: 1
 Score =  153 bits (386), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 91/196 (46%), Positives = 118/196 (60%), Gaps = 8/196 (4%)
Query: 19  IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
           I++VE VK +    D P   + E A +GRSNVGKSSL+NAL  +K +A  SK PGKT+ I
Sbjct: 3   IRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSI 61
Query: 79  NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
           N +LVN  +Y VDLPGYG+AK     RM W    + YF NR SL  V LL+D  +PPQ  
Sbjct: 62  NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDS 121
Query: 139 DLDCANWLGRNNIPLTFVFTKCDKMKVA-KGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           DL    W+   NIP T V TK DK+K++ + ++ +E+ K F +     Y  +   I TSS
Sbjct: 122 DLMMVEWMKSLNIPFTIVLTKMDKVKMSERAKKLEEHRKVFSK-----YGEY-TIIPTSS 175
Query: 198 VTGLGRDELLLHMSQL 213
           VTG G  ELL  +S L
Sbjct: 176 VTGEGISELLDLISTL 191

>pdb|1SUL|A Chain A, Crystal Structure Of The Apo-Ysxc Length = 195

Iteration: 1
 Score =  122 bits (306), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 71/188 (37%), Positives = 104/188 (55%), Gaps = 5/188 (2%)
Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           ++ + E V S+ + +  P+   PE A+ GRSNVGKSS IN+L+ +K LA TS KPGKTQ 
Sbjct: 2   KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61
Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           +N +++N   + VD+PGYGFAK     R  W    + Y   RE L  V+ ++D    P  
Sbjct: 62  LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121
Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
            D+    +L    IP+  + TK D  K+ KG+  D++ K  +Q +  N       I+ SS
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKAD--KIPKGKW-DKHAKVVRQTL--NIDPEDELILFSS 176
Query: 198 VTGLGRDE 205
            T  G+DE
Sbjct: 177 ETKKGKDE 184

>pdb|4DHE|A Chain A, Crystal Structure Of A Probable Gtp-Binding Protein Engb From Burkholderia Thailandensis Length = 223

Iteration: 1
 Score =  115 bits (289), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 57/157 (36%), Positives = 82/157 (52%), Gaps = 4/157 (2%)
Query: 11  GPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK 70
           GP +    + +  F  +    +D P   +PE A  GRSN GKS+ IN L  +K LA  SK
Sbjct: 1   GPGSMAFLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK 60
Query: 71  KPGKTQLINHFLVNKSW----YIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVL 126
            PG+TQ IN+F V  +     ++VDLPGYG+A+ P   +  W      Y   R  L G++
Sbjct: 61  TPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMI 120
Query: 127 LLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
           L++DA  P  ++D     W      P+  + TKCDK+
Sbjct: 121 LMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKL 157

>pdb|1PUI|A Chain A, Structure Of Engb Gtpase Length = 210

Iteration: 1
 Score =  113 bits (283), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 61/151 (40%), Positives = 84/151 (55%), Gaps = 2/151 (1%)
Query: 20  KEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN 79
           ++  FV S+   +  P D   E A  GRSN GKSS +N L  +K LA TSK PG+TQLIN
Sbjct: 7   QQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLIN 66
Query: 80  HFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID 139
            F V     +VDLPGYG+A+ P+  +  W      Y   R+SL G+++L+D   P + +D
Sbjct: 67  LFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLD 126
Query: 140 LDCANWLGRNNIPLTFVFTKCDKMKVAKGRR 170
                W   +NI +  + TK DK+  A G R
Sbjct: 127 QQMIEWAVDSNIAVLVLLTKADKL--ASGAR 155

>pdb|1MKY|A Chain A, Structural Analysis Of The Domain Interactions In Der, A Switch Protein Containing Two Gtpase Domains Length = 439

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/169 (29%), Positives = 80/169 (47%), Gaps = 14/169 (8%)
Query: 38  DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ---LINHFLVNKSWYIVDLPG 94
           D  + AI+GR NVGKS+L NA++  KE AL S  PG T+       F+  + +  VD  G
Sbjct: 179 DAIKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAG 237
Query: 95  YGF-AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
               ++    T   +S++     + +  +  V++++DA+    + D   A    R     
Sbjct: 238 LRRKSRVEPRTVEKYSNYRVVDSIEKADV--VVIVLDATQGITRQDQRXAGLXERRGRAS 295
Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHHPPWIMTSSVTG 200
             VF K D + V + +R DE    F +L RE   +  + P I TS+  G
Sbjct: 296 VVVFNKWD-LVVHREKRYDE----FTKLFREKLYFIDYSPLIFTSADKG 339

>pdb|2CXX|A Chain A, Crystal Structure Of A Probable Gtp-binding Protein Engb Length = 190

Iteration: 1
 Score = 43.9 bits (102), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 16/132 (12%)
Query: 46  GRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTR 105
           GRSNVGKS+LI  L  KK      K+PG T+ I   +  K+  I+D PG+GF        
Sbjct: 8   GRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIE-IEWKNHKIIDXPGFGFXXGLPKEV 64
Query: 106 MDWSSFTKGYFL--NRESLVGVLLLIDASVPPQ-----------KIDLDCANWLGRNNIP 152
            +       +F+  N +++   +L++D    P+            ID++   +L   +IP
Sbjct: 65  QERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIP 124
Query: 153 LTFVFTKCDKMK 164
                 K DK+K
Sbjct: 125 TIVAVNKLDKIK 136

>pdb|3IEV|A Chain A, Crystal Structure Of Era In Complex With Mggnp And The 3' End Of 16s Rrna Length = 308

Iteration: 1
 Score = 43.9 bits (102), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL----INHFLVNKSWYIVDLPGYGF 97
            AI+G+ NVGKS+L+N L+  K +++ S K G T++    + +         +D PG   
Sbjct: 13  VAIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 71
Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGRNNIPLTFV 156
            K  DV         K      E    +L +IDA+   +  D +   N++   N P+  V
Sbjct: 72  PKKSDVLGHSMVEIAKQSL---EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 128
Query: 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
             K DK+  AK      N+      I + +P     +  S++ G   DEL+
Sbjct: 129 INKIDKIGPAK------NVLPLIDEIHKKHPELTEIVPISALKGANLDELV 173

>pdb|3R9W|A Chain A, Crystal Structure Of Era In Complex With Mggdpnp And Nucleotides 1506- 1542 Of 16s Ribosomal Rna Length = 307

Iteration: 1
 Score = 43.5 bits (101), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 15/171 (8%)
Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL----INHFLVNKSWYIVDLPGYGF 97
            AI+G+ NVGKS+L+N L+  K +++ S K G T++    + +         +D PG   
Sbjct: 12  VAIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYE 70
Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGRNNIPLTFV 156
            K  DV         K      E    +L +IDA+   +  D +   N++   N P+  V
Sbjct: 71  PKKSDVLGHSMVEIAKQSL---EEADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVV 127
Query: 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
             K DK+  AK      N+      I + +P     +  S++ G   DEL+
Sbjct: 128 INKIDKIGPAK------NVLPLIDEIHKKHPELTEIVPISALKGANLDELV 172

>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Sulfate Ion And Gdp Length = 456

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 41/164 (25%), Positives = 75/164 (45%), Gaps = 13/164 (7%)
Query: 41  EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ--LINHFLVNKSWY-IVDLPGYGF 97
           +F ++GR NVGKSSL+NA++  +E  + S   G T+  +   F  N+  + IVD  G   
Sbjct: 197 QFCLIGRPNVGKSSLVNAML-GEERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRK 255
Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
                 T   +S       ++R  +V V+L  +  +  Q  D   A +       +  V 
Sbjct: 256 KGKVYETTEKYSVLRALKAIDRSEVVAVVLDGEEGIIEQ--DKRIAGYAHEAGKAVVIVV 313
Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHPPWIMTSSVT 199
            K D +      + +  +K F++ IR+++    + P +  S++T
Sbjct: 314 NKWDAVD-----KDESTMKEFEENIRDHFQFLDYAPILFMSALT 352

>pdb|2DYK|A Chain A, Crystal Structure Of N-Terminal Gtp-Binding Domain Of Enga From Thermus Thermophilus Hb8 Length = 161

Iteration: 1
 Score = 40.4 bits (93), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 37/130 (28%), Positives = 54/130 (41%), Gaps = 22/130 (16%)
Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKS---WYIVDLPGYGFAKA 100
           I+GR NVGKSSL N L++K+  A+ +  PG T+ +   +V      + +VD  G      
Sbjct: 6   IVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGL----- 59
Query: 101 PDVTRMDWSS------FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT 154
                  WS         +      E    VL  +D      + D + A +L R   P+ 
Sbjct: 60  -------WSGDKWEKKIQEKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKGKPVI 112
Query: 155 FVFTKCDKMK 164
            V TK D  K
Sbjct: 113 LVATKVDDPK 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	219
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	7e-96
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	5e-95
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	2e-92
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	3e-92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	6e-53
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	2e-25
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	9e-15
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	2e-11
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	4e-10
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	3e-09
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	4e-09
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	2e-08
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	5e-08
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	5e-08
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	7e-08
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	1e-07
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	1e-07
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	3e-07
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	2e-07
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	2e-06
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	2e-06
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	5e-06
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	7e-06
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	9e-06
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	9e-06
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	2e-05
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	5e-05
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	2e-04
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	5e-05
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	6e-05
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	2e-04
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	4e-04
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	6e-04

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} Length = 223

 Score =  278 bits (712), Expect = 7e-96
 Identities = 63/208 (30%), Positives = 94/208 (45%), Gaps = 5/208 (2%)

Query: 11  GPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK 70
           GP +    + +  F  +    +D P   +PE A  GRSN GKS+ IN L  +K LA  SK
Sbjct: 1   GPGSMAFLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASK 60

Query: 71  KPGKTQLINHFLVNKSW----YIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVL 126
            PG+TQ IN+F V  +     ++VDLPGYG+A+ P   +  W      Y   R  L G++
Sbjct: 61  TPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMI 120

Query: 127 LLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI-KSFQQLIREN 185
           L++DA  P  ++D     W      P+  + TKCDK+   +         KS        
Sbjct: 121 LMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAG 180

Query: 186 YPHHPPWIMTSSVTGLGRDELLLHMSQL 213
           Y       + S++   G D+    +   
Sbjct: 181 YAGKLTVQLFSALKRTGLDDAHALIESW 208

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* Length = 195

 Score =  274 bits (704), Expect = 5e-95
 Identities = 71/198 (35%), Positives = 108/198 (54%), Gaps = 5/198 (2%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           ++ + E V S+ + +  P+   PE A+ GRSNVGKSS IN+L+ +K LA TS KPGKTQ 
Sbjct: 2   KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           +N +++N   + VD+PGYGFAK     R  W    + Y   RE L  V+ ++D    P  
Sbjct: 62  LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
            D+    +L    IP+  + TK DK+   KG+  D++ K  +Q +  +       I+ SS
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIP--KGKW-DKHAKVVRQTLNIDP--EDELILFSS 176

Query: 198 VTGLGRDELLLHMSQLRN 215
            T  G+DE    + ++ N
Sbjct: 177 ETKKGKDEAWGAIKKMIN 194

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 Length = 210

 Score =  268 bits (688), Expect = 2e-92
 Identities = 65/196 (33%), Positives = 96/196 (48%), Gaps = 4/196 (2%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
             ++  FV S+   +  P D   E A  GRSN GKSS +N L  +K LA TSK PG+TQL
Sbjct: 5   NYQQTHFVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQL 64

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           IN F V     +VDLPGYG+A+ P+  +  W      Y   R+SL G+++L+D   P + 
Sbjct: 65  INLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKD 124

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS 197
           +D     W   +NI +  + TK DK+    G R    +   ++ +   +         SS
Sbjct: 125 LDQQMIEWAVDSNIAVLVLLTKADKLA--SGAR-KAQLNMVREAVLA-FNGDVQVETFSS 180

Query: 198 VTGLGRDELLLHMSQL 213
           +   G D+L   +   
Sbjct: 181 LKKQGVDKLRQKLDTW 196

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A Length = 195

 Score =  267 bits (685), Expect = 3e-92
 Identities = 88/195 (45%), Positives = 113/195 (57%), Gaps = 6/195 (3%)

Query: 19  IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI 78
           I++VE VK +    D P   + E A +GRSNVGKSSL+NAL  +K +A  SK PGKT+ I
Sbjct: 3   IRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSI 61

Query: 79  NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKI 138
           N +LVN  +Y VDLPGYG+AK     RM W    + YF NR SL  V LL+D  +PPQ  
Sbjct: 62  NFYLVNSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDS 121

Query: 139 DLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV 198
           DL    W+   NIP T V TK DK+K     R  + ++  +++  +        I TSSV
Sbjct: 122 DLMMVEWMKSLNIPFTIVLTKMDKVK--MSER-AKKLEEHRKVFSKYG--EYTIIPTSSV 176

Query: 199 TGLGRDELLLHMSQL 213
           TG G  ELL  +S L
Sbjct: 177 TGEGISELLDLISTL 191

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 Length = 190

 Score =  167 bits (426), Expect = 6e-53
 Identities = 41/182 (22%), Positives = 67/182 (36%), Gaps = 22/182 (12%)

Query: 40  PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99
                 GRSNVGKS+LI  L  KK      K+PG T+ I       +  I+D+PG+GF  
Sbjct: 2   ATIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMM 58

Query: 100 APDVTRMD-WSSFTKGYFLNR-ESLVGVLLLIDASVPPQ-----------KIDLDCANWL 146
                  +        +  +  +++   +L++D    P+            ID++   +L
Sbjct: 59  GLPKEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFL 118

Query: 147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT-SSVTGLGRDE 205
              +IP      K DK+K        E I    +             +  S+  G   + 
Sbjct: 119 RELDIPTIVAVNKLDKIK-----NVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIER 173

Query: 206 LL 207
           L 
Sbjct: 174 LK 175

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* Length = 413

 Score =  101 bits (253), Expect = 2e-25
 Identities = 38/190 (20%), Positives = 56/190 (29%), Gaps = 25/190 (13%)

Query: 30  RAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGK---TQLINHFLVNK- 85
            A           A+ G +  GKSS IN L         + K G    T   + +     
Sbjct: 60  DALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNI 119

Query: 86  -SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN 144
            +    DLPG G    P             Y    +       +I ++   +K D+D A 
Sbjct: 120 PNVVFWDLPGIGSTNFPP----------DTYLEKMKFYEYDFFIIISATRFKKNDIDIAK 169

Query: 145 WLGRNNIPLTFVFTKCDKMKVAKGRRP--DENIKSFQQLIRENY--------PHHPPWIM 194
            +        FV TK D     +        + +   Q IR N            PP  +
Sbjct: 170 AISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFL 229

Query: 195 TSSVTGLGRD 204
            S+      D
Sbjct: 230 LSNKNVCHYD 239

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana} Length = 423

 Score = 71.2 bits (175), Expect = 9e-15
 Identities = 38/206 (18%), Positives = 66/206 (32%), Gaps = 43/206 (20%)

Query: 16  HSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
             +   +         +      R    + GR NVGKSS +NALV +  +++ S   G T
Sbjct: 11  VPRGSHMLEDPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQN-VSIVSDYAGTT 69

Query: 76  --------------QLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRES 121
                          +           +VD PG          R++ +         R  
Sbjct: 70  TDPVYKSMELHPIGPVT----------LVDTPGLDDVGELGRLRVEKARRV----FYRAD 115

Query: 122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL 181
               +L+ D++  P   + D  N      IP   V  K D +         E  +  + L
Sbjct: 116 C--GILVTDSAPTPY--EDDVVNLFKEMEIPFVVVVNKIDVLG--------EKAEELKGL 163

Query: 182 IRENYPHHPPWIMTSSVTGLGRDELL 207
               Y      ++ S++   G D++ 
Sbjct: 164 YESRYEA--KVLLVSALQKKGFDDIG 187

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* Length = 308

 Score = 61.3 bits (150), Expect = 2e-11
 Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 47/186 (25%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKP--------------GKTQLINHFLVNKSWY 88
           AI+G+ NVGKS+L+N L+  K +++ S K                + Q+I          
Sbjct: 14  AIVGKPNVGKSTLLNNLLGTK-VSIISPKAGTTRMRVLGVKNIPNEAQII---------- 62

Query: 89  IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR---ESLVGV---LLLIDASVPPQKID-LD 141
            +D P  G  +      +       G+ +     +SL      L +IDA+   +  D   
Sbjct: 63  FLDTP--GIYEPKKSDVL-------GHSMVEIAKQSLEEADVILFMIDATEGWRPRDEEI 113

Query: 142 CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGL 201
             N++   N P+  V  K DK+       P +N+      I + +P     +  S++ G 
Sbjct: 114 YQNFIKPLNKPVIVVINKIDKIG------PAKNVLPLIDEIHKKHPELTEIVPISALKGA 167

Query: 202 GRDELL 207
             DEL+
Sbjct: 168 NLDELV 173

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 Length = 301

 Score = 57.5 bits (140), Expect = 4e-10
 Identities = 46/189 (24%), Positives = 74/189 (39%), Gaps = 59/189 (31%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKP-------------GKTQLINHFLVNKSWYI 89
           AI+G+ NVGKS+L+N L+  K +A  S +P             G+ Q++           
Sbjct: 11  AIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIV----------F 59

Query: 90  VDLPGYGFAKAPDVTRMDWSSFTKGYFLNR---ESLVGV---LLLIDASVPPQKIDLDCA 143
           VD PG           +       G F+++   E+L  V   + ++D   PP   D   A
Sbjct: 60  VDTPGLHKPM----DAL-------GEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVA 108

Query: 144 NWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW---IMTSSV 198
             L      +P+  V  K D  K      P+E +K++ +L+        P     M S++
Sbjct: 109 RALKPLVGKVPILLVGNKLDAAK-----YPEEAMKAYHELL--------PEAEPRMLSAL 155

Query: 199 TGLGRDELL 207
                 EL 
Sbjct: 156 DERQVAELK 164

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X Length = 301

 Score = 54.8 bits (133), Expect = 3e-09
 Identities = 38/184 (20%), Positives = 65/184 (35%), Gaps = 48/184 (26%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKP-------------GKTQLINHFLVNKSWYI 89
           AI+GR NVGKS+L+N L+ +K +++TS+K              G  Q I           
Sbjct: 12  AIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAI----------Y 60

Query: 90  VDLPGYGFAKAPDVTRMDWSSFTKGYFLNR---ESLVGV---LLLIDASVPPQKIDLDCA 143
           VD P  G         +          +N+    S+  V   + +++ +      D    
Sbjct: 61  VDTP--GLHMEEK-RAI-------NRLMNKAASSSIGDVELVIFVVEGTRWTPD-DEMVL 109

Query: 144 NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGR 203
           N L     P+     K D ++         ++    Q +          +  S+ TGL  
Sbjct: 110 NKLREGKAPVILAVNKVDNVQ------EKADLLPHLQFLASQMNFL-DIVPISAETGLNV 162

Query: 204 DELL 207
           D + 
Sbjct: 163 DTIA 166

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 Length = 282

 Score = 54.2 bits (131), Expect = 4e-09
 Identities = 22/51 (43%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           I+G  NVGKS+LIN L +K  +A T  +PG T       V K   ++D PG
Sbjct: 125 IIGIPNVGKSTLINRLAKKN-IAKTGDRPGITTSQQWVKVGKELELLDTPG 174

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 38/199 (19%), Positives = 73/199 (36%), Gaps = 55/199 (27%)

Query: 35  PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT-----QLINHFLVNKSWYI 89
             ++  +F ++GR NVGKSSL+NA++  +E  + S   G T         +    + + I
Sbjct: 171 YNEEVIQFCLIGRPNVGKSSLVNAML-GEERVIVSNVAGTTRDAVDTSFTYN--QQEFVI 227

Query: 90  VDLPG-------------YGFAKAP------DVTRMDWSSFTKGYFLNRESLVGVLLLID 130
           VD  G             Y   +A       +V                     V +++D
Sbjct: 228 VDTAGMRKKGKVYETTEKYSVLRALKAIDRSEV---------------------VAVVLD 266

Query: 131 ASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-- 188
                 + D   A +       +  V  K D +      + +  +K F++ IR+++    
Sbjct: 267 GEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVD-----KDESTMKEFEENIRDHFQFLD 321

Query: 189 HPPWIMTSSVTGLGRDELL 207
           + P +  S++T      L+
Sbjct: 322 YAPILFMSALTKKRIHTLM 340

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} Length = 436

 Score = 51.3 bits (124), Expect = 5e-08
 Identities = 38/179 (21%), Positives = 67/179 (37%), Gaps = 35/179 (19%)

Query: 39  RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINHFLVNKSWYIVDLPGY 95
           +P  AI+GR NVGKS++ N +  ++  ++    PG T      +   +N  + ++D  G 
Sbjct: 3   KPVVAIVGRPNVGKSTIFNRIAGERI-SIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGI 61

Query: 96  GFAKAPDVTRMDWSSFTKGYFLNRESLVG------VLLLIDASVPPQKIDLDCANWLGRN 149
                P + ++            +++ +       ++ +++        D + A  L R 
Sbjct: 62  DIGDEPFLAQIR-----------QQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYRT 110

Query: 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
             P+     K D            NI  F  L   E YP        S   GLG  +LL
Sbjct: 111 KKPVVLAVNKLD------NTEMRANIYDFYSLGFGEPYP-------ISGTHGLGLGDLL 156

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* Length = 262

 Score = 51.0 bits (122), Expect = 5e-08
 Identities = 26/155 (16%), Positives = 48/155 (30%), Gaps = 28/155 (18%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAK 99
            +LG+  VGKSS +N+L+ ++     S    +              +  I+D PG   A 
Sbjct: 40  LVLGKGGVGKSSTVNSLIGEQV-VRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG 98

Query: 100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP---------QKIDLDCANWLGRNN 150
             +   ++        FL   ++  +L +    V             I       +    
Sbjct: 99  YVNHQALE----LIKGFLVNRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKT 154

Query: 151 IPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN 185
           +    V T            PDE   S++    + 
Sbjct: 155 L---LVLTHAQFSP------PDE--LSYETFSSKR 178

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* Length = 262

 Score = 50.3 bits (121), Expect = 7e-08
 Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           I+G  N GKS++IN L  K+  +    +PG T+ I  F +     I+D PG
Sbjct: 104 IVGVPNTGKSTIINKLKGKR-ASSVGAQPGITKGIQWFSLENGVKILDTPG 153

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} Length = 369

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)

Query: 44  ILGRSNVGKSSLINALVR----KKELALTSKKPGKTQLINHFLVNKSWYIVDLPG 94
           ++G +NVGKS+ IN ++     K  +  TS  PG T  +    +     + D PG
Sbjct: 167 VVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPG 221

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 49.8 bits (120), Expect = 1e-07
 Identities = 47/200 (23%), Positives = 70/200 (35%), Gaps = 56/200 (28%)

Query: 35  PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT-----QLINHFLVNKSWYI 89
              D  + AI+GR NVGKS+L NA++  KE AL S  PG T       +      + +  
Sbjct: 176 EITDAIKVAIVGRPNVGKSTLFNAIL-NKERALVSPIPGTTRDPVDDEVFID--GRKYVF 232

Query: 90  VDLPG--------------YGFAKA------PDVTRMDWSSFTKGYFLNRESLVGVLLLI 129
           VD  G              Y   +        DV                     V++++
Sbjct: 233 VDTAGLRRKSRVEPRTVEKYSNYRVVDSIEKADV---------------------VVIVL 271

Query: 130 DASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH 189
           DA+    + D   A  + R       VF K D +        ++    F +L RE     
Sbjct: 272 DATQGITRQDQRMAGLMERRGRASVVVFNKWDLVV-----HREKRYDEFTKLFREKLYFI 326

Query: 190 P--PWIMTSSVTGLGRDELL 207
              P I TS+  G   D ++
Sbjct: 327 DYSPLIFTSADKGWNIDRMI 346

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 Length = 439

 Score = 49.0 bits (118), Expect = 3e-07
 Identities = 38/182 (20%), Positives = 64/182 (35%), Gaps = 40/182 (21%)

Query: 40  PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINHFLVNKSWYIVDLPGYG 96
               I+GR NVGKS+L N LV+KK+ A+   + G T            K++ +VD  G  
Sbjct: 2   ATVLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVF 60

Query: 97  FAKAPDVTRMDWSSFTKGYFLNR----------ESLVGVLLLIDASVPPQKIDLDCANWL 146
                           +     +          E+ + VL ++D      K D   A++L
Sbjct: 61  DN-------------PQDIISQKMKEVTLNMIREADL-VLFVVDGKRGITKEDESLADFL 106

Query: 147 GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDE 205
            ++ +    V  K + ++        E       L   E  P        S+   +  D 
Sbjct: 107 RKSTVDTILVANKAENLR----EFEREVKPELYSLGFGEPIP-------VSAEHNINLDT 155

Query: 206 LL 207
           +L
Sbjct: 156 ML 157

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} Length = 161

 Score = 48.3 bits (116), Expect = 2e-07
 Identities = 41/178 (23%), Positives = 65/178 (36%), Gaps = 36/178 (20%)

Query: 40  PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKT---QLINHFLVNKSWYIVDLPGYG 96
            +  I+GR NVGKSSL N L++K+  A+ +  PG T   +          + +VD  G  
Sbjct: 2   HKVVIVGRPNVGKSSLFNRLLKKRS-AVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLW 60

Query: 97  FAKAPDVTRMDWSSFTKGYFLNRESLVG------VLLLIDASVPPQKIDLDCANWLGRNN 150
                +  ++             +          VL  +D      + D + A +L R  
Sbjct: 61  SGDKWE-KKIQ-----------EKVDRALEDAEVVLFAVDGRAELTQADYEVAEYLRRKG 108

Query: 151 IPLTFVFTKCDKMKVAKGRRPDENIKSFQQL-IRENYPHHPPWIMTSSVTGLGRDELL 207
            P+  V TK D        + +  +     L   +  P       TSS    G +ELL
Sbjct: 109 KPVILVATKVD------DPKHELYLGPLYGLGFGDPIP-------TSSEHARGLEELL 153

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} Length = 368

 Score = 46.9 bits (111), Expect = 2e-06
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)

Query: 44  ILGRSNVGKSSLINALV-----RKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY 95
           ++G +NVGKS+ IN ++       + +  TS  PG T  +    +++   + D PG 
Sbjct: 165 VVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGI 221

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* Length = 274

 Score = 46.3 bits (109), Expect = 2e-06
 Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 36/182 (19%)

Query: 41  EFAIL--GRSNVGKSSLINALVRKKELALTSKKPGK-----------TQLINHFLVNKSW 87
           EF ++  G S +GKS+LIN+L      +     P               LI    V    
Sbjct: 8   EFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLL 67

Query: 88  YIVDLPGYGFAKAPDVTRMDWSSFTKGYF---LNRESL------------VGVLLLIDAS 132
            IVD PG+G A            +    F   LN ES               +  +  + 
Sbjct: 68  TIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSG 127

Query: 133 VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW 192
              + +D++    L    + +  +  K D +       P+E  + F++ I +    H   
Sbjct: 128 HGLKPLDIEFMKRLH-EKVNIIPLIAKADTLT------PEE-CQQFKKQIMKEIQEHKIK 179

Query: 193 IM 194
           I 
Sbjct: 180 IY 181

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} Length = 357

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 36/188 (19%), Positives = 67/188 (35%), Gaps = 20/188 (10%)

Query: 38  DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-KSWYIVDLPGYG 96
           + P   I G  NVGKS+L+ AL   K    +     +   +  F      + I+D PG  
Sbjct: 166 EIPTVVIAGHPNVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLL 225

Query: 97  FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS----VPPQKIDLDCANWLGR-NNI 151
                +   ++  +     +L       ++ + D S     P ++         G   ++
Sbjct: 226 DRPISERNEIEKQAILALRYLGN----LIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDL 281

Query: 152 PLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMS 211
           P   V  K D          +ENIK  ++ ++E        I  S++ G G D +   + 
Sbjct: 282 PFLVVINKIDVA-------DEENIKRLEKFVKE---KGLNPIKISALKGTGIDLVKEEII 331

Query: 212 QLRNYWDQ 219
           +      +
Sbjct: 332 KTLRPLAE 339

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* Length = 301

 Score = 44.8 bits (105), Expect = 7e-06
 Identities = 37/201 (18%), Positives = 68/201 (33%), Gaps = 37/201 (18%)

Query: 41  EFAIL--GRSNVGKSSLINALV-----RKKELALTSKKPGKTQLINHFL-------VNKS 86
           EF ++  G S +GKS+LIN+L       ++ ++  ++K  +T  I           V   
Sbjct: 18  EFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLR 77

Query: 87  WYIVDLPGYGFAKAPDVTRMDWSSFTKGYF---LNRESLVG------------VLLLIDA 131
             +VD PGYG A           S+    F   L+ ES +                +   
Sbjct: 78  LTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPF 137

Query: 132 SVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP 191
               + +D+     +  N + +  V  K D +         +  +  ++ I +    H  
Sbjct: 138 GHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLT-------LKERERLKKRILDEIEEHNI 189

Query: 192 WIMTSSVTGLGRDELLLHMSQ 212
            I          DE     ++
Sbjct: 190 KIYHLPDAESDEDEDFKEQTR 210

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} Length = 228

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 41/201 (20%), Positives = 72/201 (35%), Gaps = 29/201 (14%)

Query: 24  FVKSSGRAKDCPKD------DRPEFAILGRSNVGKSSLINALVRKK----ELALTSKKPG 73
              SSGR     +        +    + G  NVGKSS +N + R        + T+K   
Sbjct: 8   HHHSSGRENLYFQGLPSINPHKKTIILSGAPNVGKSSFMNIVSRANVDVQSYSFTTKNL- 66

Query: 74  KTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLL-LIDA 131
               + HF      + I+D PG       +   ++ ++ T    L    + GV+L +ID 
Sbjct: 67  ---YVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT---AL--AHINGVILFIIDI 118

Query: 132 SVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY 186
           S        +  N         +N  +   F K D            + K   + I +N 
Sbjct: 119 SEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKID---KCNMDSLSIDNKLLIKQILDNV 175

Query: 187 PHHPPWIMTSSVTGLGRDELL 207
            +   +   S++TG+G ++  
Sbjct: 176 KNPIKFSSFSTLTGVGVEQAK 196

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A Length = 172

 Score = 43.3 bits (103), Expect = 9e-06
 Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)

Query: 43 AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
           I GR N GKSSL+NAL   +E A+ +   G T
Sbjct: 8  VIAGRPNAGKSSLLNALAG-REAAIVTDIAGTT 39

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* Length = 270

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 27/187 (14%), Positives = 63/187 (33%), Gaps = 21/187 (11%)

Query: 13  YAGHSQIKEVEFVKSSGRAKDCPKDDRPEF--AILGRSNVGKSSLINALVRKKELALTSK 70
           ++G +        K      +  ++D       ++G+  VGKSS +N+++ ++     S 
Sbjct: 11  WSGINTFAPATQTKLLELLGNLKQEDVNSLTILVMGKGGVGKSSTVNSIIGERV-VSISP 69

Query: 71  KPGKT---QLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLL 127
              +     +++      +  I+D PG       +   M  +      FL  +++  +L 
Sbjct: 70  FQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYIN--DMALNIIKS--FLLDKTIDVLLY 125

Query: 128 LIDASVPP-QKIDLDCANWLGRNNIPLTF-----VFTKCDKMKVAKGRRPDENI----KS 177
           +          +D   A  +  +     +       T         G   DE      ++
Sbjct: 126 VDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSP-PDGLPYDEFFSKRSEA 184

Query: 178 FQQLIRE 184
             Q++R 
Sbjct: 185 LLQVVRS 191

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 14/33 (42%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
            I+G+ NVGKS+L+N L+  ++ A+ +  PG T
Sbjct: 247 VIVGKPNVGKSTLLNRLLN-EDRAIVTDIPGTT 278

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B* Length = 482

 Score = 41.0 bits (97), Expect = 2e-04
 Identities = 16/89 (17%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 125 VLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE 184
           VL ++DAS P  + D      +   N     V  K D ++               + I+ 
Sbjct: 327 VLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKINE-----------EEIKN 373

Query: 185 NYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
                   +  S++ G G ++L   + + 
Sbjct: 374 KLGTDRHMVKISALKGEGLEKLEESIYRE 402

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* Length = 476

 Score = 42.5 bits (101), Expect = 5e-05
 Identities = 15/33 (45%), Positives = 21/33 (63%), Gaps = 1/33 (3%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
            I G+ N GKS+L+N L+  +E A+ S  PG T
Sbjct: 237 VIAGKPNAGKSTLLNTLLG-QERAIVSHMPGTT 268

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} Length = 462

 Score = 42.1 bits (100), Expect = 6e-05
 Identities = 17/33 (51%), Positives = 23/33 (69%), Gaps = 1/33 (3%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKT 75
           AI+GR NVGKSSL+NA  +  + A+ +  PG T
Sbjct: 228 AIVGRPNVGKSSLLNAWSQ-SDRAIVTDLPGTT 259

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} Length = 239

 Score = 40.0 bits (93), Expect = 2e-04
 Identities = 16/85 (18%), Positives = 34/85 (40%), Gaps = 4/85 (4%)

Query: 15 GHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGK 74
           HS  +E       G  +  P++ +    ++G++  GKS+  N+++ +K     +     
Sbjct: 6  HHSSGRE-NLYFQGGPGRQEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSI 64

Query: 75 TQ---LINHFLVNKSWYIVDLPGYG 96
          T+     +         +VD PG  
Sbjct: 65 TKKCEKRSSSWKETELVVVDTPGIF 89

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* Length = 695

 Score = 40.0 bits (92), Expect = 4e-04
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 36 KDDRPEFAILGRSNVGKSSLINALVRKK 63
          +       +LG    GKS+ +NAL+ + 
Sbjct: 66 QQGVFRLLVLGDMKRGKSTFLNALIGEN 93

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* Length = 272

 Score = 38.8 bits (91), Expect = 6e-04
 Identities = 43/194 (22%), Positives = 67/194 (34%), Gaps = 60/194 (30%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKK------PGKT--QLINHFLVNKSWYIVDLP 93
            A++G  N GK+SL N         +T         PG T  +       NK   I DLP
Sbjct: 6   IALIGNPNSGKTSLFN--------LITGHNQRVGNWPGVTVERKSGLVKKNKDLEIQDLP 57

Query: 94  G-YGF-AKAPD--VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN 149
           G Y     +P+  V R          +L  +    +L ++DA+           N L RN
Sbjct: 58  GIYSMSPYSPEAKVARD---------YLLSQRADSILNVVDAT-----------N-LERN 96

Query: 150 ----------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT 199
                      IP+T      D   V  G+    N+      +        P + TS++ 
Sbjct: 97  LYLTTQLIETGIPVTIALNMID---VLDGQGKKINVDKLSYHLG------VPVVATSALK 147

Query: 200 GLGRDELLLHMSQL 213
             G D+++   +  
Sbjct: 148 QTGVDQVVKKAAHT 161

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	219
3pqc_A	195	Probable GTP-binding protein ENGB; rossmann fold,	100.0
1svi_A	195	GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro	99.98
4dhe_A	223	Probable GTP-binding protein ENGB; melioidosis, RA	99.97
4dkx_A	216	RAS-related protein RAB-6A; GTP binding fold, memb	99.95
3iev_A	308	GTP-binding protein ERA; ERA, GTPase, KH domain, a	99.94
2il1_A	192	RAB12; G-protein, GDP, GTPase, predicted, structur	99.93
2p5s_A	199	RAS and EF-hand domain containing; G-protein, RAB,	99.93
1z0f_A	179	RAB14, member RAS oncogene family; RAB GTPase, ves	99.93
1kao_A	167	RAP2A; GTP-binding protein, small G protein, GDP,	99.93
3q72_A	166	GTP-binding protein RAD; G-domain, CAV2 beta, sign	99.93
1u8z_A	168	RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH	99.93
3tkl_A	196	RAS-related protein RAB-1A; vesicle trafficking, p	99.93
2bov_A	206	RAla, RAS-related protein RAL-A; C3BOT, exoenzyme,	99.93
3reg_A	194	RHO-like small GTPase; cytoskeleton, nucleotide-bi	99.93
1ek0_A	170	Protein (GTP-binding protein YPT51); vesicular tra	99.93
2nzj_A	175	GTP-binding protein REM 1; GDP/GTP binding, GTP hy	99.93
2ew1_A	201	RAS-related protein RAB-30; G-protein, GTP analogu	99.93
2fn4_A	181	P23, RAS-related protein R-RAS; GDP/GTP binding, G	99.93
2hup_A	201	RAS-related protein RAB-43; G-protein, GDP, struct	99.93
3kkq_A	183	RAS-related protein M-RAS; GTP-binding, GTPase, si	99.92
2bme_A	186	RAB4A, RAS-related protein RAB4A; GTP-binding prot	99.92
2iwr_A	178	Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi	99.92
1g16_A	170	RAS-related protein SEC4; G protein RAB, signaling	99.92
3tw8_B	181	RAS-related protein RAB-35; longin domain, RAB GTP	99.92
1wms_A	177	RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p	99.92
2a9k_A	187	RAS-related protein RAL-A; bacterial ADP-ribosyltr	99.92
1z0j_A	170	RAB-22, RAS-related protein RAB-22A; RAB GTPase, R	99.92
3bc1_A	195	RAS-related protein RAB-27A; RAB27, GTPase, RAB, s	99.92
2a5j_A	191	RAS-related protein RAB-2B; GTPase, signal transdu	99.92
1c1y_A	167	RAS-related protein RAP-1A; GTP-binding proteins,	99.92
1z06_A	189	RAS-related protein RAB-33B; RAB GTPase, RAB33B GT	99.92
1zbd_A	203	Rabphilin-3A; G protein, effector, RABCDR, synapti	99.92
2hxs_A	178	RAB-26, RAS-related protein RAB-28; GTPase, signal	99.92
3dz8_A	191	RAS-related protein RAB-3B; GDP, GTPase, structura	99.92
2qu8_A	228	Putative nucleolar GTP-binding protein 1; GTPase,	99.92
3ihw_A	184	Centg3; RAS, centaurin, GTPase, structural genomic	99.92
2gf9_A	189	RAS-related protein RAB-3D; G-protein, structural	99.92
4bas_A	199	ADP-ribosylation factor, putative (small GTPase, p	99.92
2fg5_A	192	RAB-22B, RAS-related protein RAB-31; G-protein, GT	99.92
3clv_A	208	RAB5 protein, putative; malaria, GTPase, structura	99.92
3t5g_A	181	GTP-binding protein RHEB; immunoglobulin-like beta	99.92
3q85_A	169	GTP-binding protein REM 2; G-domain, CAV2 beta, si	99.92
1r2q_A	170	RAS-related protein RAB-5A; GTPase, GNP, atomic re	99.92
2g6b_A	180	RAS-related protein RAB-26; G-protein, GTP analogu	99.92
3q3j_B	214	RHO-related GTP-binding protein RHO6; RAS-binding	99.92
2erx_A	172	GTP-binding protein DI-RAS2; GTP hydrolysis, trans	99.92
1ky3_A	182	GTP-binding protein YPT7P; vesicular traffic, GTP	99.92
1z08_A	170	RAS-related protein RAB-21; RAB GTPase, vesicular	99.92
2efe_B	181	Small GTP-binding protein-like; GEF, GTPase, VPS9,	99.92
2bcg_Y	206	Protein YP2, GTP-binding protein YPT1; RABGTPase,	99.92
1z2a_A	168	RAS-related protein RAB-23; RAB GTPase, vesicular	99.92
4dsu_A	189	GTPase KRAS, isoform 2B; small G-protein, signalin	99.92
2f7s_A	217	C25KG, RAS-related protein RAB-27B; G-protein, str	99.92
2atv_A	196	RERG, RAS-like estrogen-regulated growth inhibitor	99.92
2y8e_A	179	RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti	99.92
1fzq_A	181	ADP-ribosylation factor-like protein 3; protein-GD	99.92
2cxx_A	190	Probable GTP-binding protein ENGB; structural geno	99.92
2oil_A	193	CATX-8, RAS-related protein RAB-25; G-protein, GDP	99.92
3cph_A	213	RAS-related protein SEC4; RAB GTPase, prenylation,	99.92
2lkc_A	178	Translation initiation factor IF-2; NMR {Geobacill	99.92
2dyk_A	161	GTP-binding protein; GTPase, ribosome-binding prot	99.92
2j1l_A	214	RHO-related GTP-binding protein RHOD; GTPase, memb	99.91
3oes_A	201	GTPase rhebl1; small GTPase, structural genomics,	99.91
1zd9_A	188	ADP-ribosylation factor-like 10B; transport protei	99.91
2h57_A	190	ADP-ribosylation factor-like protein 6; GTP, GTPas	99.91
2atx_A	194	Small GTP binding protein TC10; GTPase, P-loop, al	99.91
1x3s_A	195	RAS-related protein RAB-18; GTPase, GNP, structura	99.91
3cbq_A	195	GTP-binding protein REM 2; FLJ38964A, structural g	99.91
1upt_A	171	ARL1, ADP-ribosylation factor-like protein 1; hydr	99.91
3con_A	190	GTPase NRAS; structural genomics consortium, SGC,	99.91
2gf0_A	199	GTP-binding protein DI-RAS1; GDP/GTP binding, GTP	99.91
2o52_A	200	RAS-related protein RAB-4B; G-protein, GDP, struct	99.91
2ce2_X	166	GTPase HRAS; signaling protein, guanine nucleotide	99.91
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.91
2fu5_C	183	RAS-related protein RAB-8A; MSS4:RAB8 protein comp	99.91
2q3h_A	201	RAS homolog gene family, member U; GTPase, structu	99.91
3cpj_B	223	GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl	99.91
1wf3_A	301	GTP-binding protein; GTPase, riken structural geno	99.91
1ksh_A	186	ARF-like protein 2; small GTPase, small GTP-bindin	99.91
4djt_A	218	GTP-binding nuclear protein GSP1; structural genom	99.91
3iby_A	256	Ferrous iron transport protein B; G protein, G dom	99.91
2wji_A	165	Ferrous iron transport protein B homolog; membrane	99.91
1r8s_A	164	ADP-ribosylation factor 1; protein transport/excha	99.91
4gzl_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.91
1vg8_A	207	RAS-related protein RAB-7; GTP-binding protein, pr	99.91
1mh1_A	186	RAC1; GTP-binding, GTPase, small G-protein, RHO fa	99.91
3t1o_A	198	Gliding protein MGLA; G domain containing protein,	99.91
1zj6_A	187	ADP-ribosylation factor-like protein 5; ARL, GTP-b	99.91
3bwd_D	182	RAC-like GTP-binding protein ARAC6; G domain, cyto	99.9
2j0v_A	212	RAC-like GTP-binding protein ARAC7; nucleotide-bin	99.9
3c5c_A	187	RAS-like protein 12; GDP, GTPase, structural genom	99.9
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.9
2gco_A	201	H9, RHO-related GTP-binding protein RHOC; GTPase,s	99.9
1m7b_A	184	RND3/RHOE small GTP-binding protein; small GTPase,	99.9
3a1s_A	258	Iron(II) transport protein B; FEOB, iron transport	99.9
3gj0_A	221	GTP-binding nuclear protein RAN; G protein, GDP, a	99.9
2h17_A	181	ADP-ribosylation factor-like protein 5A; GDP, GTPa	99.9
2yc2_C	208	IFT27, small RAB-related GTPase; transport protein	99.9
1f6b_A	198	SAR1; gtpases, N-terminal helix, Mg-containing com	99.9
2b6h_A	192	ADP-ribosylation factor 5; membrane trafficking, G	99.9
1m2o_B	190	GTP-binding protein SAR1, GTP binding protein; zin	99.9
2fh5_B	214	SR-beta, signal recognition particle receptor beta	99.9
2fv8_A	207	H6, RHO-related GTP-binding protein RHOB; GDP/GTP	99.9
1gwn_A	205	RHO-related GTP-binding protein RHOE; GTPase, inac	99.9
2g3y_A	211	GTP-binding protein GEM; small GTPase, GDP, inacti	99.89
1moz_A	183	ARL1, ADP-ribosylation factor-like protein 1; GTP-	99.89
1pui_A	210	ENGB, probable GTP-binding protein ENGB; structura	99.89
3i8s_A	274	Ferrous iron transport protein B; GTPase, GPCR, ir	99.89
2x77_A	189	ADP-ribosylation factor; GTP-binding protein, smal	99.89
3llu_A	196	RAS-related GTP-binding protein C; structural geno	99.89
2wjg_A	188	FEOB, ferrous iron transport protein B homolog; me	99.89
3b1v_A	272	Ferrous iron uptake transporter protein B; G prote	99.89
3k53_A	271	Ferrous iron transport protein B; GTPase fold, hel	99.89
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.89
2gj8_A	172	MNME, tRNA modification GTPase TRME; G-domain dime	99.88
2hjg_A	436	GTP-binding protein ENGA; GTPase ENGA KH-domain, h	99.88
1lnz_A	342	SPO0B-associated GTP-binding protein; GTPase, OBG,	99.88
3o47_A	329	ADP-ribosylation factor GTPase-activating protein	99.88
3th5_A	204	RAS-related C3 botulinum toxin substrate 1; rossma	99.8
3l0i_B	199	RAS-related protein RAB-1A; GEF-GDF-RAB complex, G	99.87
4dcu_A	456	GTP-binding protein ENGA; GTPase, GDP, protein bin	99.87
2cjw_A	192	GTP-binding protein GEM; nucleotide-binding, small	99.87
1mky_A	439	Probable GTP-binding protein ENGA; GTPase, DER, KH	99.87
2zej_A	184	Dardarin, leucine-rich repeat kinase 2; parkinson'	99.86
1xzp_A	482	Probable tRNA modification GTPase TRME; GTP-bindin	99.86
3t5d_A	274	Septin-7; GTP-binding protein, cytoskeleton, signa	99.86
3gee_A	476	MNME, tRNA modification GTPase MNME; G protein, cy	99.86
2wkq_A	332	NPH1-1, RAS-related C3 botulinum toxin substrate 1	99.86
3qq5_A	423	Small GTP-binding protein; hydrogenase, H-cluster,	99.86
3r7w_A	307	Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT	99.86
1ega_A	301	Protein (GTP-binding protein ERA); GTPase, RNA-bin	99.86
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	99.85
3c5h_A	255	Glucocorticoid receptor DNA-binding factor 1; RAS,	99.85
3sjy_A	403	Translation initiation factor 2 subunit gamma; zin	99.85
2e87_A	357	Hypothetical protein PH1320; GTP-binding, GTPase,	99.85
1s0u_A	408	EIF-2-gamma, translation initiation factor 2 gamma	99.85
2aka_B	299	Dynamin-1; fusion protein, GTPase domain, myosin,	99.85
3geh_A	462	MNME, tRNA modification GTPase MNME; G protein, U3	99.84
3lxw_A	247	GTPase IMAP family member 1; immunity, structural	99.84
1wb1_A	482	Translation elongation factor SELB; selenocysteine	99.84
3lxx_A	239	GTPase IMAP family member 4; structural genomics c	99.84
2xtp_A	260	GTPase IMAP family member 2; immune system, G prot	99.84
2f9l_A	199	RAB11B, member RAS oncogene family; RAB11B GTPase,	99.84
1kk1_A	410	EIF2gamma; initiation of translation; HET: GNP; 1.	99.84
3j2k_7	439	ERF3, eukaryotic polypeptide chain release factor	99.83
3izy_P	537	Translation initiation factor IF-2, mitochondrial;	99.82
3dpu_A	535	RAB family protein; roccor, G-domain, COR, GTP-bin	99.81
1oix_A	191	RAS-related protein RAB-11A; small G protein, intr	99.81
2qtf_A	364	Protein HFLX, GTP-binding protein; beta-alpha-barr	99.81
3cb4_D	599	GTP-binding protein LEPA; GTPase, OB-fold, membran	99.81
1g7s_A	594	Translation initiation factor IF2/EIF5B; translati	99.81
2j69_A	695	Bacterial dynamin-like protein; FZO, FZL, GTPase,	99.8
1jwy_B	315	Dynamin A GTPase domain; dynamin, GTPase, GDP, myo	99.8
3tr5_A	528	RF-3, peptide chain release factor 3; protein synt	99.8
2ywe_A	600	GTP-binding protein LEPA; G domain, beta-barrel, f	99.8
3r7w_B	331	Gtpase2, GTP-binding protein GTR2; RAG gtpases, GT	99.8
1zo1_I	501	IF2, translation initiation factor 2; E. coli, rib	99.79
3p26_A	483	Elongation factor 1 alpha-like protein; GTP/GDP bi	99.79
1d2e_A	397	Elongation factor TU (EF-TU); G-protein, beta-barr	99.79
2c78_A	405	Elongation factor TU-A; hydrolase, GTPase, transla	99.78
2x2e_A	353	Dynamin-1; nitration, hydrolase, membrane fission,	99.78
1zun_B	434	Sulfate adenylate transferase, subunit 1/adenylyls	99.78
2elf_A	370	Protein translation elongation factor 1A; tRNA, py	99.78
1nrj_B	218	SR-beta, signal recognition particle receptor beta	99.77
3izq_1	611	HBS1P, elongation factor 1 alpha-like protein; NO-	99.75
1jny_A	435	EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-	99.74
3avx_A	1289	Elongation factor TS, elongation factor TU, linke	99.74
2qag_A	361	Septin-2, protein NEDD5; cell cycle, cell division	99.74
3p32_A	355	Probable GTPase RV1496/MT1543; structural genomics	99.74
1f60_A	458	Elongation factor EEF1A; protein-protein complex,	99.74
3t34_A	360	Dynamin-related protein 1A, linker, dynamin-relat	99.73
3zvr_A	772	Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mito	99.73
3mca_A	592	HBS1, elongation factor 1 alpha-like protein; prot	99.73
1dar_A	691	EF-G, elongation factor G; ribosomal translocase,	99.72
1udx_A	416	The GTP-binding protein OBG; TGS domain, riken str	99.71
1r5b_A	467	Eukaryotic peptide chain release factor GTP-bindi	99.71
2qpt_A	550	EH domain-containing protein-2; protein-nucleotide	99.71
2h5e_A	529	Peptide chain release factor RF-3; beta barrel, tr	99.71
2rdo_7	704	EF-G, elongation factor G; elongation factor G, EF	99.7
2xex_A	693	Elongation factor G; GTPase, translation, biosynth	99.7
2www_A	349	Methylmalonic aciduria type A protein, mitochondri	99.7
1wxq_A	397	GTP-binding protein; structural genomics, riken st	99.69
2dy1_A	665	Elongation factor G; translocation, GTP complex, s	99.69
2ged_A	193	SR-beta, signal recognition particle receptor beta	99.68
3vqt_A	548	RF-3, peptide chain release factor 3; translation,	99.68
2qnr_A	301	Septin-2, protein NEDD5; structural genomics conso	99.66
1h65_A	270	Chloroplast outer envelope protein OEP34; GTPase,	99.65
3def_A	262	T7I23.11 protein; chloroplast, TOC33, GTPase, hydr	99.65
2wsm_A	221	Hydrogenase expression/formation protein (HYPB); m	99.64
2p67_A	341	LAO/AO transport system kinase; ARGK, structural G	99.64
2qag_C	418	Septin-7; cell cycle, cell division, GTP-binding,	99.62
1yrb_A	262	ATP(GTP)binding protein; GTPase, P-loop, rossman f	99.61
3j25_A	638	Tetracycline resistance protein TETM; antibiotic r	99.6
4a9a_A	376	Ribosome-interacting GTPase 1; DRG-DFRP complex, r	99.59
4fn5_A	709	EF-G 1, elongation factor G 1; translation, transl	99.56
2hf9_A	226	Probable hydrogenase nickel incorporation protein	99.55
1n0u_A	842	EF-2, elongation factor 2; G-protein, CIS-proline,	99.53
2qm8_A	337	GTPase/ATPase; G protein, G3E, metallochaperone, c	99.51
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	99.47
1cip_A	353	Protein (guanine nucleotide-binding protein alpha-	99.47
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	99.46
2dby_A	368	GTP-binding protein; GDP, structural genomics, NPP	99.44
1jal_A	363	YCHF protein; nucleotide-binding fold, structural	99.41
2qag_B	427	Septin-6, protein NEDD5; cell cycle, cell division	99.41
3ohm_A	327	Guanine nucleotide-binding protein G(Q) subunit A;	99.38
4fid_A	340	G protein alpha subunit; RAS-like domain, all-heli	99.36
3sop_A	270	Neuronal-specific septin-3; hydrolase; HET: GDP; 2	99.32
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	99.32
3l82_B	227	F-box only protein 4; TRFH domain, helix, GTPase d	99.21
2j37_W	504	Signal recognition particle 54 kDa protein (SRP54)	99.21
1tq4_A	413	IIGP1, interferon-inducible GTPase; interferon gam	99.16
2ohf_A	396	Protein OLA1, GTP-binding protein 9; ATPase, GTPas	99.15
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	99.08
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	99.05
2xtz_A	354	Guanine nucleotide-binding protein alpha-1 subuni;	99.05
3ec1_A	369	YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase	98.96
1puj_A	282	YLQF, conserved hypothetical protein YLQF; structu	98.95
3h2y_A	368	GTPase family protein; GTP-binding protein YQEH, p	98.94
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	98.94
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.9
1azs_C	402	GS-alpha; complex (lyase/hydrolase), hydrolase, si	98.89
1ni3_A	392	YCHF GTPase, YCHF GTP-binding protein; structural	98.89
3szr_A	608	Interferon-induced GTP-binding protein MX1; interf	98.85
3dm5_A	443	SRP54, signal recognition 54 kDa protein; protein-	98.8
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	98.8
1f5n_A	592	Interferon-induced guanylate-binding protein 1; GB	98.78
2v3c_C	432	SRP54, signal recognition 54 kDa protein; nucleoti	98.73
3kl4_A	433	SRP54, signal recognition 54 kDa protein; signal r	98.59
3cnl_A	262	YLQF, putative uncharacterized protein; circular p	98.57
1j8m_F	297	SRP54, signal recognition 54 kDa protein; signalin	98.35
3e70_C	328	DPA, signal recognition particle receptor; FTSY, S	98.25
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	98.16
3q5d_A	447	Atlastin-1; G protein, GTPase, GDP/GTP binding, hy	98.05
1vma_A	306	Cell division protein FTSY; TM0570, structural gen	97.99
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	97.94
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.93
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	97.87
2xxa_A	433	Signal recognition particle protein; protein trans	97.8
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	97.77
1u0l_A	301	Probable GTPase ENGC; permutation, OB-fold, zinc-f	97.71
2px0_A	296	Flagellar biosynthesis protein FLHF; SRP GTPase, f	97.65
1zu4_A	320	FTSY; GTPase, signal recognition particle, SRP, re	97.58
3ney_A	197	55 kDa erythrocyte membrane protein; structural ge	97.55
2ffh_A	425	Protein (FFH); SRP54, signal recognition particle,	97.52
1kgd_A	180	CASK, peripheral plasma membrane CASK; maguk, guan	97.45
1ye8_A	178	Protein THEP1, hypothetical UPF0334 kinase-like pr	97.44
1lvg_A	198	Guanylate kinase, GMP kinase; transferase; HET: AD	97.43
1ls1_A	295	Signal recognition particle protein; FFH, SRP54, S	97.42
1ex7_A	186	Guanylate kinase; substrate-induced FIT, domain mo	97.42
1bif_A	469	6-phosphofructo-2-kinase/ fructose-2,6-bisphospha;	97.4
3a4m_A	260	L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m	97.39
3a00_A	186	Guanylate kinase, GMP kinase; domain movement, dim	97.33
3tr0_A	205	Guanylate kinase, GMP kinase; purines, pyrimidines	97.28
1znw_A	207	Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans	97.27
4dzz_A	206	Plasmid partitioning protein PARF; deviant walker	97.27
1s96_A	219	Guanylate kinase, GMP kinase; E.coli, dimer, SAD,	97.27
1z6g_A	218	Guanylate kinase; structural genomics, SGC, struct	97.26
1zp6_A	191	Hypothetical protein ATU3015; alpha-beta protein.,	97.26
3tau_A	208	Guanylate kinase, GMP kinase; structural genomics,	97.19
3c8u_A	208	Fructokinase; YP_612366.1, putative fructose trans	97.19
3tif_A	235	Uncharacterized ABC transporter ATP-binding prote;	97.14
1htw_A	158	HI0065; nucleotide-binding fold, structural genomi	97.12
4gp7_A	171	Metallophosphoesterase; polynucleotide kinase phos	97.11
2pcj_A	224	ABC transporter, lipoprotein-releasing system ATP-	97.08
1kag_A	173	SKI, shikimate kinase I; transferase, structural g	97.05
2j41_A	207	Guanylate kinase; GMP, GMK, transferase, ATP-bindi	97.05
2qor_A	204	Guanylate kinase; phosphotransferase, purine metab	97.04
2onk_A	240	Molybdate/tungstate ABC transporter, ATP-binding p	97.04
3asz_A	211	Uridine kinase; cytidine phosphorylation, transfer	97.02
3gfo_A	275	Cobalt import ATP-binding protein CBIO 1; structur	97.02
2bdt_A	189	BH3686; alpha-beta protein, structural genomics, P	97.02
1sgw_A	214	Putative ABC transporter; structural genomics, P p	97.01
3lw7_A	179	Adenylate kinase related protein (ADKA-like); AMP,	97.01
2cbz_A	237	Multidrug resistance-associated protein 1; ABC pro	97.0
1mv5_A	243	LMRA, multidrug resistance ABC transporter ATP-bin	96.99
1b0u_A	262	Histidine permease; ABC transporter, transport pro	96.99
4g1u_C	266	Hemin import ATP-binding protein HMUV; membrane tr	96.99
2ff7_A	247	Alpha-hemolysin translocation ATP-binding protein	96.99
2eyu_A	261	Twitching motility protein PILT; pilus retraction	96.97
2pze_A	229	Cystic fibrosis transmembrane conductance regulat;	96.97
1np6_A	174	Molybdopterin-guanine dinucleotide biosynthesis pr	96.97
3kb2_A	173	SPBC2 prophage-derived uncharacterized protein YOR	96.96
4eun_A	200	Thermoresistant glucokinase; putative sugar kinase	96.96
1g6h_A	257	High-affinity branched-chain amino acid transport	96.96
2v9p_A	305	Replication protein E1; AAA+ molecular motor, DNA	96.95
4ido_A	457	Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HE	96.94
2bbw_A	246	Adenylate kinase 4, AK4; nucleotide kinase, nucleo	96.94
2olj_A	263	Amino acid ABC transporter; ABC domain, ATPase, hy	96.93
2i3b_A	189	HCR-ntpase, human cancer-related ntpase; AAA, ross	96.93
1ji0_A	240	ABC transporter; ATP binding protein, structural g	96.93
2ghi_A	260	Transport protein; multidrug resistance protein, M	96.93
1vpl_A	256	ABC transporter, ATP-binding protein; TM0544, stru	96.92
3b85_A	208	Phosphate starvation-inducible protein; PHOH2, ATP	96.92
3cwq_A	209	Para family chromosome partitioning protein; alpha	96.92
2d2e_A	250	SUFC protein; ABC-ATPase, SUF protein, 310-helix,	96.92
2zu0_C	267	Probable ATP-dependent transporter SUFC; iron-sulf	96.91
2qi9_C	249	Vitamin B12 import ATP-binding protein BTUD; inner	96.9
1cke_A	227	CK, MSSA, protein (cytidine monophosphate kinase);	96.9
2ixe_A	271	Antigen peptide transporter 1; ABC ATPase, hydrola	96.9
2ihy_A	279	ABC transporter, ATP-binding protein; ATPase, ABC	96.89
3t61_A	202	Gluconokinase; PSI-biology, structural genomics, p	96.89
2if2_A	204	Dephospho-COA kinase; alpha-beta protein, structur	96.88
1y63_A	184	LMAJ004144AAA protein; structural genomics, protei	96.88
3lnc_A	231	Guanylate kinase, GMP kinase; ALS collaborative cr	96.87
2nq2_C	253	Hypothetical ABC transporter ATP-binding protein H	96.85
3uie_A	200	Adenylyl-sulfate kinase 1, chloroplastic; rossmann	96.85
3aez_A	312	Pantothenate kinase; transferase, homodimer, COA b	96.84
1knq_A	175	Gluconate kinase; ALFA/beta structure, transferase	96.84
2f1r_A	171	Molybdopterin-guanine dinucleotide biosynthesis pr	96.83
3ec2_A	180	DNA replication protein DNAC; helicase loader, rep	96.83
1ly1_A	181	Polynucleotide kinase; PNK, phosphatase, transfera	96.83
2yz2_A	266	Putative ABC transporter ATP-binding protein TM_0;	96.83
3nh6_A	306	ATP-binding cassette SUB-family B member 6, mitoc;	96.81
1qhx_A	178	CPT, protein (chloramphenicol phosphotransferase);	96.81
3vaa_A	199	Shikimate kinase, SK; structural genomics, center	96.81
2pjz_A	263	Hypothetical protein ST1066; ATP binding protein,	96.8
4a74_A	231	DNA repair and recombination protein RADA; hydrola	96.79
4b4t_L	437	26S protease subunit RPT4; hydrolase, AAA-atpases,	96.76
2jaq_A	205	Deoxyguanosine kinase; transferase, deoxyribonucle	96.75
3fvq_A	359	Fe(3+) IONS import ATP-binding protein FBPC; nucle	96.74
1jjv_A	206	Dephospho-COA kinase; P-loop nucleotide-binding fo	96.74
1nks_A	194	Adenylate kinase; thermophilic, transferase; HET:	96.73
3fb4_A	216	Adenylate kinase; psychrophIle, phosphotransferase	96.72
2ehv_A	251	Hypothetical protein PH0186; KAIC, RECA ATPase, un	96.72
2bbs_A	290	Cystic fibrosis transmembrane conductance regulato	96.71
3trf_A	185	Shikimate kinase, SK; amino acid biosynthesis, tra	96.7
2qt1_A	207	Nicotinamide riboside kinase 1; non-protein kinase	96.7
1lw7_A	365	Transcriptional regulator NADR; NMN, NMN adenylyl	96.7
1kht_A	192	Adenylate kinase; phosphotransferase, signaling pr	96.69
1xjc_A	169	MOBB protein homolog; structural genomics, midwest	96.69
2kjq_A	149	DNAA-related protein; solution structure, NESG, st	96.69
2gza_A	361	Type IV secretion system protein VIRB11; ATPase, h	96.68
3dl0_A	216	Adenylate kinase; phosphotransferase, zinc coordin	96.68
3tui_C	366	Methionine import ATP-binding protein METN; ABC-tr	96.68
2jeo_A	245	Uridine-cytidine kinase 1; UCK, transferase, ATP-b	96.68
2cdn_A	201	Adenylate kinase; phosphoryl transfer, associative	96.68
3tqc_A	321	Pantothenate kinase; biosynthesis of cofactors, pr	96.67
3jvv_A	356	Twitching mobility protein; hexameric P-loop ATPas	96.67
1z47_A	355	CYSA, putative ABC-transporter ATP-binding protein	96.67
3iij_A	180	Coilin-interacting nuclear ATPase protein; alpha a	96.66
2pt7_A	330	CAG-ALFA; ATPase, protein-protein complex, type IV	96.66
3rlf_A	381	Maltose/maltodextrin import ATP-binding protein M;	96.64
1odf_A	290	YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser	96.64
2rhm_A	193	Putative kinase; P-loop containing nucleoside trip	96.64
2yyz_A	359	Sugar ABC transporter, ATP-binding protein; sugar	96.64
1ukz_A	203	Uridylate kinase; transferase; HET: ADP AMP; 1.90A	96.64
2it1_A	362	362AA long hypothetical maltose/maltodextrin trans	96.63
3cm0_A	186	Adenylate kinase; ATP-binding, cytoplasm, nucleoti	96.6
1g29_1	372	MALK, maltose transport protein MALK; ATPase, acti	96.6
1v43_A	372	Sugar-binding transport ATP-binding protein; ATPas	96.59
3end_A	307	Light-independent protochlorophyllide reductase ir	96.58
1via_A	175	Shikimate kinase; structural genomics, transferase	96.58
1uf9_A	203	TT1252 protein; P-loop, nucleotide binding domain,	96.57
1gvn_B	287	Zeta; postsegregational killing system, plasmid; 1	96.56
2v54_A	204	DTMP kinase, thymidylate kinase; nucleotide biosyn	96.56
2x8a_A	274	Nuclear valosin-containing protein-like; nuclear p	96.56
3sr0_A	206	Adenylate kinase; phosphoryl transfer analogue, AL	96.56
1rz3_A	201	Hypothetical protein rbstp0775; MCSG, structural g	96.55
1sq5_A	308	Pantothenate kinase; P-loop, transferase; HET: PAU	96.55
2c95_A	196	Adenylate kinase 1; transferase, AP4A, nucleotide	96.54
1nn5_A	215	Similar to deoxythymidylate kinase (thymidylate K;	96.53
4b4t_M	434	26S protease regulatory subunit 6A; hydrolase, AAA	96.53
3tlx_A	243	Adenylate kinase 2; structural genomics, structura	96.53
3b9p_A	297	CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc	96.52
4e22_A	252	Cytidylate kinase; P-loop, CMP/ATP binding, transf	96.52
2ewv_A	372	Twitching motility protein PILT; pilus retraction	96.51
4b4t_K	428	26S protease regulatory subunit 6B homolog; hydrol	96.51
1qf9_A	194	UMP/CMP kinase, protein (uridylmonophosphate/cytid	96.51
1d2n_A	272	N-ethylmaleimide-sensitive fusion protein; hexamer	96.51
1zak_A	222	Adenylate kinase; ATP:AMP-phosphotransferase, tran	96.5
1rj9_A	304	FTSY, signal recognition protein; SRP-GTPase domai	96.5
1tev_A	196	UMP-CMP kinase; ploop, NMP binding region, LID reg	96.5
3gd7_A	390	Fusion complex of cystic fibrosis transmembrane co	96.49
1e4v_A	214	Adenylate kinase; transferase(phosphotransferase);	96.49
1ixz_A	254	ATP-dependent metalloprotease FTSH; AAA domain fol	96.48
1zd8_A	227	GTP:AMP phosphotransferase mitochondrial; ATP:AMP	96.47
2ze6_A	253	Isopentenyl transferase; crown GALL tumor, cytokin	96.47
2oap_1	511	GSPE-2, type II secretion system protein; hexameri	96.46
2plr_A	213	DTMP kinase, probable thymidylate kinase; TMP-bind	96.46
2bwj_A	199	Adenylate kinase 5; phosphoryl transfer reaction,	96.45
3d31_A	348	Sulfate/molybdate ABC transporter, ATP-binding pro	96.45
1aky_A	220	Adenylate kinase; ATP:AMP phosphotransferase, myok	96.45
2iyv_A	184	Shikimate kinase, SK; transferase, aromatic amino	96.45
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	96.44
1uj2_A	252	Uridine-cytidine kinase 2; alpha/beta mononucleoti	96.44
2qz4_A	262	Paraplegin; AAA+, SPG7, protease, ADP, structural	96.43
1p9r_A	418	General secretion pathway protein E; bacterial typ	96.42
2pt5_A	168	Shikimate kinase, SK; aromatic amino acid biosynth	96.42
4b4t_J	405	26S protease regulatory subunit 8 homolog; hydrola	96.4
2wwf_A	212	Thymidilate kinase, putative; transferase, malaria	96.4
3b9q_A	302	Chloroplast SRP receptor homolog, alpha subunit CP	96.4
3umf_A	217	Adenylate kinase; rossmann fold, transferase; 2.05	96.39
2vp4_A	230	Deoxynucleoside kinase; ATP-binding, DNA synthesis	96.38
1gtv_A	214	TMK, thymidylate kinase; transferase, transferase	96.36
2z0h_A	197	DTMP kinase, thymidylate kinase; ATP-binding, nucl	96.35
1e6c_A	173	Shikimate kinase; phosphoryl transfer, ADP, shikim	96.34
1jbk_A	195	CLPB protein; beta barrel, chaperone; 1.80A {Esche	96.33
3kta_A	182	Chromosome segregation protein SMC; structural mai	96.33
2w0m_A	235	SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus	96.33
1oxx_K	353	GLCV, glucose, ABC transporter, ATP binding protei	96.33
2pbr_A	195	DTMP kinase, thymidylate kinase; transferase, nucl	96.32
1nij_A	318	Hypothetical protein YJIA; structural genomics, P-	96.32
1xwi_A	322	SKD1 protein; VPS4B, AAA ATPase, protein transport	96.32
2yvu_A	186	Probable adenylyl-sulfate kinase; transferase, str	96.31
1in4_A	334	RUVB, holliday junction DNA helicase RUVB; AAA+-cl	96.3
2xb4_A	223	Adenylate kinase; ATP-binding, nucleotide-binding,	96.29
1iy2_A	278	ATP-dependent metalloprotease FTSH; AAA domain fol	96.29
2pez_A	179	Bifunctional 3'-phosphoadenosine 5'- phosphosulfat	96.29
2npi_A	460	Protein CLP1; CLP1-PCF11 complex, ATP binding, ter	96.29
2vli_A	183	Antibiotic resistance protein; transferase, tunica	96.27
3r20_A	233	Cytidylate kinase; structural genomics, seattle st	96.27
1vht_A	218	Dephospho-COA kinase; structural genomics, transfe	96.26
3be4_A	217	Adenylate kinase; malaria, cryptosporidium parvum	96.24
2p5t_B	253	PEZT; postsegregational killing system, phosphoryl	96.22
3nwj_A	250	ATSK2; P loop, shikimate, nucleoside monophosphate	96.21
1cr0_A	296	DNA primase/helicase; RECA-type protein fold, tran	96.2
2b8t_A	223	Thymidine kinase; deoxyribonucleoside kinase, zinc	96.2
4b4t_I	437	26S protease regulatory subunit 4 homolog; hydrola	96.18
1lv7_A	257	FTSH; alpha/beta domain, four helix bundle, hydrol	96.18
1ak2_A	233	Adenylate kinase isoenzyme-2; nucleoside monophosp	96.17
2obl_A	347	ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O	96.17
2f6r_A	281	COA synthase, bifunctional coenzyme A synthase; 18	96.16
2cvh_A	220	DNA repair and recombination protein RADB; filamen	96.14
1sxj_A	516	Activator 1 95 kDa subunit; clamp loader, processi	96.12
2og2_A	359	Putative signal recognition particle receptor; nuc	96.11
1n0w_A	243	DNA repair protein RAD51 homolog 1; DNA repair, ho	96.08
3b60_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.08
3euj_A	483	Chromosome partition protein MUKB, linker; MUKB, M	96.05
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	96.05
2yhs_A	503	FTSY, cell division protein FTSY; cell cycle, prot	96.05
1zuh_A	168	Shikimate kinase; alpha-beta protein, transferase;	96.03
1m7g_A	211	Adenylylsulfate kinase; APS kinase, transferase, s	96.03
2p65_A	187	Hypothetical protein PF08_0063; CLPB, malaria, str	96.02
3b5x_A	582	Lipid A export ATP-binding/permease protein MSBA;	96.01
2w58_A	202	DNAI, primosome component (helicase loader); ATP-b	96.0
4eaq_A	229	DTMP kinase, thymidylate kinase; structural genomi	96.0
2dpy_A	438	FLII, flagellum-specific ATP synthase; beta barrel	95.97
3bos_A	242	Putative DNA replication factor; P-loop containing	95.96
1f2t_A	149	RAD50 ABC-ATPase; DNA double-strand break repair,	95.94
1svm_A	377	Large T antigen; AAA+ fold, viral protein; HET: AT	95.91
2yl4_A	595	ATP-binding cassette SUB-family B member 10, mitoc	95.9
3qf7_A	365	RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.	95.89
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.89
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.89
3qf4_B	598	Uncharacterized ABC transporter ATP-binding prote	95.88
4b4t_H	467	26S protease regulatory subunit 7 homolog; hydrola	95.88
2grj_A	192	Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp	95.86
3ake_A	208	Cytidylate kinase; CMP kinase, CMP complex, open c	95.85
3d8b_A	357	Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s	95.84
2qmh_A	205	HPR kinase/phosphorylase; V267F mutation, ATP-bind	95.82
4a82_A	578	Cystic fibrosis transmembrane conductance regulat;	95.8
3t15_A	293	Ribulose bisphosphate carboxylase/oxygenase activ	95.79
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	95.77
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.76
3qf4_A	587	ABC transporter, ATP-binding protein; multidrug tr	95.76
1q3t_A	236	Cytidylate kinase; nucleotide monophosphate kinase	95.76
3vfd_A	389	Spastin; ATPase, microtubule severing, hydrolase;	95.74
3ozx_A	538	RNAse L inhibitor; ATP binding cassette protein, h	95.72
1nlf_A	279	Regulatory protein REPA; replicative DNA helicase	95.72
3h4m_A	285	Proteasome-activating nucleotidase; ATPase, PAN, A	95.71
1yqt_A	538	RNAse L inhibitor; ATP-binding cassette, ribosome	95.67
1njg_A	250	DNA polymerase III subunit gamma; rossman-like fol	95.67
3gmt_A	230	Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle	95.67
2chg_A	226	Replication factor C small subunit; DNA-binding pr	95.66
1a7j_A	290	Phosphoribulokinase; transferase, calvin cycle; 2.	95.62
1tue_A	212	Replication protein E1; helicase, replication, E1E	95.61
3n70_A	145	Transport activator; sigma-54, ntpase, PSI, MCSG,	95.59
3cf0_A	301	Transitional endoplasmic reticulum ATPase; AAA, P9	95.58
2ga8_A	359	Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn	95.58
3exa_A	322	TRNA delta(2)-isopentenylpyrophosphate transferase	95.56
1zcb_A	362	G alpha I/13; GTP-binding, lipoprotein, membrane,	95.56
3bk7_A	607	ABC transporter ATP-binding protein; ABC ATPase, i	95.56
3syl_A	309	Protein CBBX; photosynthesis, rubisco activase, AA	95.55
1sxj_E	354	Activator 1 40 kDa subunit; clamp loader, processi	95.54
1fnn_A	389	CDC6P, cell division control protein 6; ORC1, AAA	95.5
1sxj_C	340	Activator 1 40 kDa subunit; clamp loader, processi	95.47
1l8q_A	324	Chromosomal replication initiator protein DNAA; AA	95.47
3d3q_A	340	TRNA delta(2)-isopentenylpyrophosphate transferase	95.47
3a8t_A	339	Adenylate isopentenyltransferase; rossmann fold pr	95.47
3crm_A	323	TRNA delta(2)-isopentenylpyrophosphate transferase	95.47
3j16_B	608	RLI1P; ribosome recycling, translation, eukarya, r	95.46
2dr3_A	247	UPF0273 protein PH0284; RECA superfamily ATPase, h	95.43
2qby_A	386	CDC6 homolog 1, cell division control protein 6 ho	95.43
1qhl_A	227	Protein (cell division protein MUKB); SMC, chromos	95.42
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.4
3pvs_A	447	Replication-associated recombination protein A; ma	95.39
1pzn_A	349	RAD51, DNA repair and recombination protein RAD51,	95.38
3foz_A	316	TRNA delta(2)-isopentenylpyrophosphate transferas;	95.35
3cf2_A	806	TER ATPase, transitional endoplasmic reticulum ATP	95.31
3tqf_A	181	HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co	95.28
3qks_A	203	DNA double-strand break repair RAD50 ATPase; RECA-	95.24
2h92_A	219	Cytidylate kinase; rossmann fold, transferase; HET	95.15
1ofh_A	310	ATP-dependent HSL protease ATP-binding subunit HSL	95.13
1sxj_D	353	Activator 1 41 kDa subunit; clamp loader, processi	95.05
3cr8_A	552	Sulfate adenylyltranferase, adenylylsulfate kinase	95.03
4fcw_A	311	Chaperone protein CLPB; AAA domain; HET: ADP; 2.35	95.02
4f4c_A	1321	Multidrug resistance protein PGP-1; ABC transporte	95.02
3eie_A	322	Vacuolar protein sorting-associated protein 4; AAA	95.01
2qgz_A	308	Helicase loader, putative primosome component; str	95.01
1c9k_A	180	COBU, adenosylcobinamide kinase; alpha/beta struct	95.0

>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A

Probab=100.00  E-value=1.9e-31  Score=198.42  Aligned_cols=192  Identities=46%  Similarity=0.715  Sum_probs=158.2

Q ss_pred             ccceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757           19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA   98 (219)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~   98 (219)
                      +..+++..+.....+.+....++|+++|++|+|||||+|+|++.. .....+.++++........+.++.++||||+...
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~i~Dt~G~~~~   81 (195)
T 3pqc_A            3 IRDVELVKVARTPGDYPPPLKGEVAFVGRSNVGKSSLLNALFNRK-IAFVSKTPGKTRSINFYLVNSKYYFVDLPGYGYA   81 (195)
T ss_dssp             CCCEEEEEEECSTTCCCCCTTCEEEEEEBTTSSHHHHHHHHHTSC-CSCCCSSCCCCCCEEEEEETTTEEEEECCCBSSS
T ss_pred             hhHHHHHHHhcChhhCCCCCCeEEEEECCCCCCHHHHHHHHHcCc-cccccCCCCCccCeEEEEECCcEEEEECCCCccc
Confidence            567788888888888888899999999999999999999999984 6777788888887777777889999999999888


Q ss_pred             CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHH
Q 027757           99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSF  178 (219)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  178 (219)
                      .++..++..|..+...+++....+|++++|+|+++..+..+..+..|+...+.|+++|+||+|+.+.....   ...++.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~~---~~~~~~  158 (195)
T 3pqc_A           82 KVSKKERMLWKRLVEDYFKNRWSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKMSERA---KKLEEH  158 (195)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGHH---HHHHHH
T ss_pred             cCChhhHHHHHHHHHHHHhcCcCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCChHHHH---HHHHHH
Confidence            88888899999999999999888899999999998877777777888888899999999999997643211   112222


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+.+.. . ..++++++||+++.|+++++++|.+.+..
T Consensus       159 ~~~~~~-~-~~~~~~~~Sa~~~~gv~~l~~~l~~~l~~  194 (195)
T 3pqc_A          159 RKVFSK-Y-GEYTIIPTSSVTGEGISELLDLISTLLKE  194 (195)
T ss_dssp             HHHHHS-S-CCSCEEECCTTTCTTHHHHHHHHHHHHC-
T ss_pred             HHHHhh-c-CCCceEEEecCCCCCHHHHHHHHHHHhhc
Confidence            222221 1 23689999999999999999999987653

>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*

Probab=99.98  E-value=8.2e-31  Score=195.30  Aligned_cols=192  Identities=36%  Similarity=0.565  Sum_probs=145.8

Q ss_pred             ccceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757           19 IKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA   98 (219)
Q Consensus        19 ~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~   98 (219)
                      +...++..+.....+.+....++|+++|++|+|||||+|+|++..+...+.+.++++.....+..+.++.+|||||+...
T Consensus         3 ~~~~~~~~s~~~~~~~~~~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~l~Dt~G~~~~   82 (195)
T 1svi_A            3 VTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGFA   82 (195)
T ss_dssp             CCCEEEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCCC
T ss_pred             ceeeEEEEecCChhhCCCCCCCEEEEECCCCCCHHHHHHHHhCCCCccccCCCCCceeeEEEEEECCcEEEEECCCCCcc
Confidence            45677888888888888888999999999999999999999998667778888888887777777789999999998766


Q ss_pred             CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHH
Q 027757           99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSF  178 (219)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  178 (219)
                      ......++.|..+...+++....+|++++|+|++++.+..+..+.+++...+.|+++|+||+|+.+....   ....+++
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~~~---~~~~~~~  159 (195)
T 1svi_A           83 KVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKGKW---DKHAKVV  159 (195)
T ss_dssp             SSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGGGH---HHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHHHhhhhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChHHH---HHHHHHH
Confidence            6666667888899999999876679999999999988887777778888889999999999999764311   1122333


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+.+..  ....+++++||+++.|+++++++|.+.+.
T Consensus       160 ~~~~~~--~~~~~~~~~Sa~~~~gv~~l~~~l~~~l~  194 (195)
T 1svi_A          160 RQTLNI--DPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHTC--CTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHcc--cCCCceEEEEccCCCCHHHHHHHHHHHhc
Confidence            333332  23468999999999999999999988764

>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}

Probab=99.97  E-value=1.5e-30  Score=197.90  Aligned_cols=197  Identities=30%  Similarity=0.541  Sum_probs=155.1

Q ss_pred             ccccceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeC
Q 027757           17 SQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDL   92 (219)
Q Consensus        17 ~~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDt   92 (219)
                      ..+...++..+.....+.+....++|+++|.+|+|||||+|+|++..........++++.........    ..+.+|||
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~~~~~~i~v~G~~~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~Dt   86 (223)
T 4dhe_A            7 FLLHQARFFTTVNHLRDLPPTVQPEIAFAGRSNAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGPAAEPVAHLVDL   86 (223)
T ss_dssp             HHHHTCEEEEEECSGGGSCCCCSCEEEEEESCHHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESCTTSCSEEEEEC
T ss_pred             hhhhhhhHHhcccchhhCCCCCCCEEEEEcCCCCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecCCCCCcEEEEcC
Confidence            33566788888888888888889999999999999999999999985456777788877776555554    58999999


Q ss_pred             CCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCch
Q 027757           93 PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPD  172 (219)
Q Consensus        93 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~  172 (219)
                      ||+.........++.|..+...|++....+|++++|+|++++.+..+...+.++...++|+++|+||+|+......   .
T Consensus        87 pG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~~~---~  163 (223)
T 4dhe_A           87 PGYGYAEVPGAAKAHWEQLLSSYLQTRPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQES---I  163 (223)
T ss_dssp             CCCCSSCCCSTHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHHHH---H
T ss_pred             CCCCcccCChhhHHHHHHHHHHHHhcCcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChhhH---H
Confidence            9987665666667888889999999988899999999999987777777888888889999999999999764321   1


Q ss_pred             HhHHHHHHHHHhc----CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          173 ENIKSFQQLIREN----YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       173 ~~~~~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ...+.+.+.+...    .....+++++||+++.|+++++++|.+.+..
T Consensus       164 ~~~~~~~~~l~~~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~~~~  211 (223)
T 4dhe_A          164 NALRATQKSLDAYRDAGYAGKLTVQLFSALKRTGLDDAHALIESWLRP  211 (223)
T ss_dssp             HHHHHHHHHHHHHHHHTCCSCEEEEEEBTTTTBSHHHHHHHHHHHHC-
T ss_pred             HHHHHHHHHHHhhhhcccCCCCeEEEeecCCCcCHHHHHHHHHHhcCc
Confidence            1222333333322    1234689999999999999999999887643

>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*

Probab=99.95  E-value=2.3e-27  Score=179.48  Aligned_cols=155  Identities=16%  Similarity=0.201  Sum_probs=114.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+|+|.+|+|||||+++|+...+...+.++.+..........++   .+.+|||+|          ++.|.++...
T Consensus        12 k~~KivlvGd~~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~~~~v~l~iwDtaG----------qe~~~~l~~~   81 (216)
T 4dkx_A           12 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAG----------LERFRSLIPS   81 (216)
T ss_dssp             -CEEEEEECSTTSSHHHHHHHHHHSCCC----------CEEEEEECSSCEEEEEEECCSC----------TTTCGGGHHH
T ss_pred             CcEEEEEECcCCcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEecceEEEEEEEECCC----------chhhhhHHHH
Confidence            468999999999999999999998877777777776554443333333   577899987          4556778899


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      |++.   +|++++|+|+++..++...  ..|+.      ..++|+++|+||+|+.+.  +.+..++.+++.+.++     
T Consensus        82 ~~~~---a~~~ilv~di~~~~Sf~~i--~~~~~~i~~~~~~~~piilVgNK~Dl~~~--r~V~~~e~~~~a~~~~-----  149 (216)
T 4dkx_A           82 YIRD---SAAAVVVYDITNVNSFQQT--TKWIDDVRTERGSDVIIMLVGNKTDLADK--RQVSIEEGERKAKELN-----  149 (216)
T ss_dssp             HHTT---CSEEEEEEETTCHHHHHTH--HHHHHHHHHHHTTSSEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-----
T ss_pred             Hhcc---ccEEEEEeecchhHHHHHH--HHHHHHHHHhcCCCCeEEEEeeccchHhc--CcccHHHHhhHHHHhC-----
Confidence            9998   9999999999998777653  23332      367999999999998764  5566777777777765     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       ++++++||++|.|++++|+.|.+.+.
T Consensus       150 -~~~~e~SAktg~nV~e~F~~i~~~i~  175 (216)
T 4dkx_A          150 -VMFIETSAKAGYNVKQLFRRVAAALP  175 (216)
T ss_dssp             -CEEEEEBTTTTBSHHHHHHHHHHHC-
T ss_pred             -CeeEEEeCCCCcCHHHHHHHHHHHHH
Confidence             58999999999999999999987654

>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*

Probab=99.94  E-value=1.5e-25  Score=178.39  Aligned_cols=170  Identities=25%  Similarity=0.305  Sum_probs=127.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      +...-.|+++|.+|+|||||+|+|++. .....++.+++|....  ....  +.++.++||||+............+...
T Consensus         7 ~~~~g~v~ivG~~nvGKSTLin~l~g~-~~~i~s~~~~tT~~~~~~~~~~~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~   85 (308)
T 3iev_A            7 HMKVGYVAIVGKPNVGKSTLLNNLLGT-KVSIISPKAGTTRMRVLGVKNIPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI   85 (308)
T ss_dssp             CCEEEEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTTEEEEEEECCCCCCCCTTCHHHHHHHHH
T ss_pred             CCCCCEEEEECCCCCcHHHHHHHHhCC-CccccCCCCCceeeEEEEEEecCCCCeEEEEECcCCCccccchhHHHHHHHH
Confidence            345668999999999999999999997 4566677777776532  2222  4479999999986443222333445566


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHH-HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ...++..   +|++++|+|++++.+..+... +..+...+.|+++|+||+|+....      ....+..+.+...++...
T Consensus        86 ~~~~l~~---aD~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~~~~------~~~~~~~~~l~~~~~~~~  156 (308)
T 3iev_A           86 AKQSLEE---ADVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKIGPA------KNVLPLIDEIHKKHPELT  156 (308)
T ss_dssp             HHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGSSSG------GGGHHHHHHHHHHCTTCC
T ss_pred             HHHHhhc---CCEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCCCCH------HHHHHHHHHHHHhccCCC
Confidence            6677776   899999999999888877776 777777889999999999997321      234445555555554457


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||++|.|++++++++.+.+.
T Consensus       157 ~i~~vSA~~g~gv~~L~~~l~~~l~  181 (308)
T 3iev_A          157 EIVPISALKGANLDELVKTILKYLP  181 (308)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHSC
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHhCc
Confidence            8999999999999999999988654

>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}

Probab=99.93  E-value=1.8e-25  Score=166.22  Aligned_cols=160  Identities=19%  Similarity=0.196  Sum_probs=112.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||.          ..+..+..
T Consensus        24 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~   93 (192)
T 2il1_A           24 DFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQ----------ERFNSITS   93 (192)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCc----------HHHHHHHH
Confidence            4467999999999999999999999866556666666666555555544   6899999993          34566777


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+.....    .+......+.|+++|+||+|+...  +++..++.+++.+.    + ..
T Consensus        94 ~~~~~---~d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~~~~~~----~-~~  163 (192)
T 2il1_A           94 AYYRS---AKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD--REITRQQGEKFAQQ----I-TG  163 (192)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHT----S-TT
T ss_pred             HHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc--cccCHHHHHHHHHh----c-CC
Confidence            88877   89999999999876655431    122222357999999999999754  23333444444332    1 12


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+++++||++|.|+++++++|.+.+.+
T Consensus       164 ~~~~~~SA~~g~gi~~l~~~l~~~i~~  190 (192)
T 2il1_A          164 MRFCEASAKDNFNVDEIFLKLVDDILK  190 (192)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999887654

>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}

Probab=99.93  E-value=1.7e-25  Score=167.29  Aligned_cols=168  Identities=21%  Similarity=0.274  Sum_probs=108.8

Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhh
Q 027757           30 RAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRM  106 (219)
Q Consensus        30 ~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~  106 (219)
                      ..+.......++|+++|++|+|||||+++|++..+...+.++.+.+........++   .+.+|||||..          
T Consensus        19 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------   88 (199)
T 2p5s_A           19 SAKSFSSQKAYKIVLAGDAAVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVDGERTVLQLWDTAGQE----------   88 (199)
T ss_dssp             ---------CEEEEEESSTTSSHHHHHHHHHHCCCC----------CEEEEEEETTEEEEEEEEECTTCT----------
T ss_pred             ccCCcCcCCCeEEEEECcCCCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEECCEEEEEEEEECCCCc----------
Confidence            33444556679999999999999999999999865566666666555444444443   58899999943          


Q ss_pred             hHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEccccccc----ccCCCchHhHHHH
Q 027757          107 DWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKV----AKGRRPDENIKSF  178 (219)
Q Consensus       107 ~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~----~~~~~~~~~~~~~  178 (219)
                      .+..+...+++.   +|++|+|+|++++.+..... .+..+   ...++|+++|+||+|+.+.    ..+.+..+..+++
T Consensus        89 ~~~~~~~~~~~~---~d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~  165 (199)
T 2p5s_A           89 RFRSIAKSYFRK---ADGVLLLYDVTCEKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHFGEKL  165 (199)
T ss_dssp             TCHHHHHHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHH
T ss_pred             chhhhHHHHHhh---CCEEEEEEECCChHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccccccccccccCHHHHHHH
Confidence            335667777777   89999999999876654432 11122   2257999999999999742    1234444555555


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ....+      ++++++||+++.|+++++++|.+.+.+
T Consensus       166 ~~~~~------~~~~~~SA~~g~gv~el~~~l~~~i~~  197 (199)
T 2p5s_A          166 AMTYG------ALFCETSAKDGSNIVEAVLHLAREVKK  197 (199)
T ss_dssp             HHHHT------CEEEECCTTTCTTHHHHHHHHHHHHTC
T ss_pred             HHHcC------CeEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            55443      589999999999999999999887653

>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*

Probab=99.93  E-value=6.2e-25  Score=160.87  Aligned_cols=158  Identities=21%  Similarity=0.212  Sum_probs=115.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+++|++..+.....++.+.+........+.   .+.+|||||.          ..+.....
T Consensus        13 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~   82 (179)
T 1z0f_A           13 SYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQ----------ERFRAVTR   82 (179)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTTG----------GGTCHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCeEEEEEEEECCCC----------hHhhhhHH
Confidence            3468999999999999999999999866665666666665554444443   6899999994          23345667


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-H---HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-C---ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~---~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .   +......+.|+++|+||+|+...  +....++..++.+..+      
T Consensus        83 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------  151 (179)
T 1z0f_A           83 SYYRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG------  151 (179)
T ss_dssp             HHHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------
T ss_pred             HHhcc---CCEEEEEEeCcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc--cccCHHHHHHHHHHcC------
Confidence            77777   89999999999876554432 1   12222368999999999999754  2233344444444322      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++++||+++.|++++++++.+.+.
T Consensus       152 ~~~~~~Sa~~~~gi~~l~~~l~~~i~  177 (179)
T 1z0f_A          152 LLFLEASAKTGENVEDAFLEAAKKIY  177 (179)
T ss_dssp             CEEEECCTTTCTTHHHHHHHHHHHHC
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHh
Confidence            58999999999999999999988654

>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*

Probab=99.93  E-value=7.2e-25  Score=158.55  Aligned_cols=156  Identities=19%  Similarity=0.201  Sum_probs=111.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+... ......++   .+.++||||..          .+..+...+
T Consensus         3 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~   71 (167)
T 1kao_A            3 EYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFY-RKEIEVDSSPSVLEILDTAGTE----------QFASMRDLY   71 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCTT----------CCHHHHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCcccCCCCcceeE-EEEEEECCEEEEEEEEECCCch----------hhHHHHHHH
Confidence            47999999999999999999998765554555444333 22333333   48899999943          235566777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+....     .+.......+.|+++|+||+|+...  .+...+....+.+..+      .
T Consensus        72 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~  140 (167)
T 1kao_A           72 IKN---GQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE--REVSSSEGRALAEEWG------C  140 (167)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT------S
T ss_pred             hcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc--ccCCHHHHHHHHHHhC------C
Confidence            777   8999999999986554332     1222233358999999999998754  3333445555555443      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+++.|+++++++|.+.+.+
T Consensus       141 ~~~~~Sa~~~~gi~~l~~~l~~~~~~  166 (167)
T 1kao_A          141 PFMETSAKSKTMVDELFAEIVRQMNY  166 (167)
T ss_dssp             CEEEECTTCHHHHHHHHHHHHHHHHH
T ss_pred             CEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            89999999999999999999887754

>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*

Probab=99.93  E-value=3.3e-25  Score=160.57  Aligned_cols=157  Identities=13%  Similarity=0.060  Sum_probs=96.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .+||+++|++|+|||||+++|++. ......+..+++........+  ..+.++||||..          .+..+...++
T Consensus         2 ~~ki~~vG~~~~GKSsli~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~   70 (166)
T 3q72_A            2 VYKVLLLGAPGVGKSALARIFGGV-EDGPEAEAAGHTYDRSIVVDGEEASLMVYDIWEQD----------GGRWLPGHCM   70 (166)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHCCC-----------CEEEEEEEETTEEEEEEEEECC-----------------------
T ss_pred             eEEEEEECCCCCCHHHHHHHHcCc-cccCCCCccccceEEEEEECCEEEEEEEEECCCCc----------cchhhhhhhh
Confidence            579999999999999999999986 455556666666543322222  257899999943          2345566677


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|++++.+..... ....+.    ..++|+++|+||+|+.+.  ..+..+..+.+.....      ++
T Consensus        71 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~~  139 (166)
T 3q72_A           71 AM---GDAYVIVYSVTDKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD------CK  139 (166)
T ss_dssp             -----CCEEEEEEETTCHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS--CCSCHHHHHHHHHHTT------CE
T ss_pred             hh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc--cccCHHHHHHHHHHhC------Cc
Confidence            66   89999999999876544321 112222    257999999999999764  2333344444443322      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++||++|.|++++++++.+.+...
T Consensus       140 ~~~~Sa~~~~gi~~l~~~l~~~~~~~  165 (166)
T 3q72_A          140 FIETSAALHHNVQALFEGVVRQIRLR  165 (166)
T ss_dssp             EEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             EEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999987664

>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*

Probab=99.93  E-value=1.3e-24  Score=157.39  Aligned_cols=156  Identities=16%  Similarity=0.169  Sum_probs=110.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+..... ....++   .+.++||||..          .+..+...+
T Consensus         4 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~D~~G~~----------~~~~~~~~~   72 (168)
T 1u8z_A            4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAGQE----------DYAAIRDNY   72 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCC-------------CHHHHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHhCccCCCCCCCcceEEEE-EEEECCEEEEEEEEECCCcc----------hhHHHHHHH
Confidence            5799999999999999999999876555555555444332 223333   68899999942          235677778


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+....     .+.......++|+++|+||+|+.+..  +...++...+.+..+      +
T Consensus        73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~------~  141 (168)
T 1u8z_A           73 FRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--QVSVEEAKNRADQWN------V  141 (168)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGGC--CSCHHHHHHHHHHHT------C
T ss_pred             hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccccccC--ccCHHHHHHHHHHcC------C
Confidence            877   8999999999986654332     11122222589999999999997642  333445555554433      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+++.|++++++++.+.+.+
T Consensus       142 ~~~~~Sa~~~~gi~~l~~~l~~~i~~  167 (168)
T 1u8z_A          142 NYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             eEEEeCCCCCCCHHHHHHHHHHHHHh
Confidence            89999999999999999999887653

>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=162.01  Aligned_cols=160  Identities=18%  Similarity=0.213  Sum_probs=115.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....+..+.+.....+..++   .+.+|||||..          .+..+..
T Consensus        14 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~   83 (196)
T 3tkl_A           14 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQE----------RFRTITS   83 (196)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGCTTHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcH----------hhhhhHH
Confidence            3468999999999999999999999866666666666666555555544   68999999942          2234556


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+   ...+.|+++|+||+|+....  .+..+..+++.+.++      
T Consensus        84 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~------  152 (196)
T 3tkl_A           84 SYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKK--VVDYTTAKEFADSLG------  152 (196)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTTC--CSCHHHHHHHHHHTT------
T ss_pred             HHHhh---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccccc--ccCHHHHHHHHHHcC------
Confidence            67766   89999999999866544321 11112   23578999999999997642  233344444444433      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++++||+++.|+++++++|.+.+...
T Consensus       153 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~~  180 (196)
T 3tkl_A          153 IPFLETSAKNATNVEQSFMTMAAEIKKR  180 (196)
T ss_dssp             CCEEEECTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CcEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            6899999999999999999999877654

>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=162.45  Aligned_cols=160  Identities=16%  Similarity=0.153  Sum_probs=114.1

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      +....++|+|+|++|+|||||+++|++..+...+.++.+..... .+..++   .+.+|||||..          .+..+
T Consensus        10 ~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~----------~~~~~   78 (206)
T 2bov_A           10 NSLALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAGQE----------DYAAI   78 (206)
T ss_dssp             -CCCEEEEEEECSTTSSHHHHHHHHHHSCCCTTCCTTCCEEEEE-EEEETTEEEEEEEEECCCTT----------CCHHH
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCccceEEEE-EEEECCEEEEEEEEcCCChh----------hhHHH
Confidence            34557899999999999999999999876555555555544332 233333   68899999953          23566


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      ...+++.   +|++++|+|++++.+.....     +.......++|+++|+||+|+.+.  +++..++..++.+...   
T Consensus        79 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~---  150 (206)
T 2bov_A           79 RDNYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK--RQVSVEEAKNRAEQWN---  150 (206)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT---
T ss_pred             HHHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc--ccccHHHHHHHHHHhC---
Confidence            7778877   89999999999865543321     111222248999999999999764  2334445555554433   


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                         .+++++||++|.|+++++++|.+.+..
T Consensus       151 ---~~~~~~Sa~~g~gi~~l~~~l~~~i~~  177 (206)
T 2bov_A          151 ---VNYVETSAKTRANVDKVFFDLMREIRA  177 (206)
T ss_dssp             ---CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             ---CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence               589999999999999999999886643

>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*

Probab=99.93  E-value=1.9e-25  Score=166.28  Aligned_cols=161  Identities=14%  Similarity=0.078  Sum_probs=116.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.+.... ...++   .+.+|||||..          .|..+..
T Consensus        21 ~~~~ki~~vG~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~----------~~~~~~~   89 (194)
T 3reg_A           21 KKALKIVVVGDGAVGKTCLLLAFSKGEIPTAYVPTVFENFSHV-MKYKNEEFILHLWDTAGQE----------EYDRLRP   89 (194)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EEETTEEEEEEEEEECCSG----------GGTTTGG
T ss_pred             ceeeEEEEECcCCCCHHHHHHHHhcCCCCCccCCeeeeeeEEE-EEECCEEEEEEEEECCCcH----------HHHHHhH
Confidence            4468999999999999999999999865555555555444322 22232   46899999942          2334445


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+....  .....+..  .++|+++|+||+|+.....+.+..++.+++.+.++.     
T Consensus        90 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~-----  161 (194)
T 3reg_A           90 LSYAD---SDVVLLCFAVNNRTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGC-----  161 (194)
T ss_dssp             GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTC-----
T ss_pred             hhccC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccCCCCcccHHHHHHHHHhcCC-----
Confidence            56666   8999999999987665442  12222222  478999999999998765566666777777766542     


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ..++++||++|.|++++++++.+.+..
T Consensus       162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (194)
T 3reg_A          162 VAYIEASSVAKIGLNEVFEKSVDCIFS  188 (194)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHC
T ss_pred             CEEEEeecCCCCCHHHHHHHHHHHHHh
Confidence            239999999999999999999887654

>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.93  E-value=7e-25  Score=159.18  Aligned_cols=155  Identities=21%  Similarity=0.312  Sum_probs=114.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.++||||..          .+......+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~   72 (170)
T 1ek0_A            3 SIKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQE----------RFASLAPXY   72 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCCh----------hhhhhhhhh
Confidence            46899999999999999999998866666677777666555555444   68999999942          234455667


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEccccccccc-CCCchHhHHHHHHHHHhcCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAK-GRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ++.   +|++++|+|++++.+....  ..|+.      ..+.|+++|+||+|+..... .++..+..+++.+..+     
T Consensus        73 ~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~-----  142 (170)
T 1ek0_A           73 YRN---AQAALVVYDVTKPQSFIKA--RHWVKELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEKLAEEKG-----  142 (170)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT-----
T ss_pred             hcc---CcEEEEEEecCChHHHHHH--HHHHHHHHHhcCCCCcEEEEEECCCccccccccCCCHHHHHHHHHHcC-----
Confidence            766   8999999999987554432  22222      25789999999999976432 3344444555544433     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                       .+++++||+++.|+++++++|.+.+
T Consensus       143 -~~~~~~Sa~~~~gi~~l~~~l~~~i  167 (170)
T 1ek0_A          143 -LLFFETSAKTGENVNDVFLGIGEKI  167 (170)
T ss_dssp             -CEEEECCTTTCTTHHHHHHHHHTTS
T ss_pred             -CEEEEEeCCCCCCHHHHHHHHHHHH
Confidence             5899999999999999999998754

>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}

Probab=99.93  E-value=9.6e-25  Score=159.38  Aligned_cols=160  Identities=16%  Similarity=0.102  Sum_probs=106.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|++.. .....+..+.+........++   .+.+|||||....        .+..+...
T Consensus         3 ~~~ki~i~G~~~vGKSsl~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~g~~~~--------~~~~~~~~   73 (175)
T 2nzj_A            3 ALYRVVLLGDPGVGKTSLASLFAGKQ-ERDLHEQLGEDVYERTLTVDGEDTTLVVVDTWEAEKL--------DKSWSQES   73 (175)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHCC------CCCSSSSEEEEEEEETTEEEEEEEECCC---------------CHHHHH
T ss_pred             eEEEEEEECCCCccHHHHHHHHhcCC-CccccCccccceeEEEEEECCEEEEEEEEecCCCCcc--------chhhhHHh
Confidence            35799999999999999999999974 444445566665444444444   5789999996421        12345566


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++.   +|++++|+|++++.+..... ....+..    .++|+++|+||+|+.+..  ++..++...+....+      
T Consensus        74 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~~--~v~~~~~~~~~~~~~------  142 (175)
T 2nzj_A           74 CLQG---GSAYVIVYSIADRGSFESASELRIQLRRTHQADHVPIILVGNKADLARCR--EVSVEEGRACAVVFD------  142 (175)
T ss_dssp             TTTS---CSEEEEEEETTCHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTTC--CSCHHHHHHHHHHHT------
T ss_pred             hccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhcccc--ccCHHHHHHHHHHcC------
Confidence            6666   89999999999876544322 2222222    379999999999997642  333344444444332      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++++||++|.|+++++++|.+.+...
T Consensus       143 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  170 (175)
T 2nzj_A          143 CKFIETSATLQHNVAELFEGVVRQLRLR  170 (175)
T ss_dssp             SEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999998876543

>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.93  E-value=2e-24  Score=161.90  Aligned_cols=159  Identities=17%  Similarity=0.166  Sum_probs=115.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.+|||||.          +.|..+..
T Consensus        24 ~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~   93 (201)
T 2ew1_A           24 DFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQ----------ERFRSITQ   93 (201)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHG
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCc----------HHHHHHHH
Confidence            3468999999999999999999998765555556666555444444444   6899999994          34566677


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CAN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+.   .....++|+++|+||+|+...  +++..++.+.+.+..+      
T Consensus        94 ~~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~------  162 (201)
T 2ew1_A           94 SYYRS---ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER--REVSQQRAEEFSEAQD------  162 (201)
T ss_dssp             GGSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT------
T ss_pred             HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC------
Confidence            77776   89999999999876544321 111   112357899999999999754  3334445555544433      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||++|.|+++++++|.+.+..
T Consensus       163 ~~~~~~Sa~~g~gv~~l~~~l~~~i~~  189 (201)
T 2ew1_A          163 MYYLETSAKESDNVEKLFLDLACRLIS  189 (201)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999876543

>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*

Probab=99.93  E-value=1.3e-24  Score=159.48  Aligned_cols=160  Identities=16%  Similarity=0.193  Sum_probs=111.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ....++|+++|.+|+|||||+++|++..+.....++.+.... .....++   .+.+|||||....          ..+.
T Consensus         6 ~~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~~~Dt~G~~~~----------~~~~   74 (181)
T 2fn4_A            6 PSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEF----------GAMR   74 (181)
T ss_dssp             SSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTT----------SCCH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCcCccccCCCcCceEE-EEEEECCEEEEEEEEECCCchhh----------HHHH
Confidence            345689999999999999999999998655555555544433 2233333   6889999995421          2334


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ..+++.   +|++++|+|++++.+....     .+.......+.|+++|+||+|+....  .+..+....+....     
T Consensus        75 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~v~~~~~~~~~~~~-----  144 (181)
T 2fn4_A           75 EQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQR--QVPRSEASAFGASH-----  144 (181)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGGC--CSCHHHHHHHHHHT-----
T ss_pred             HHHHhh---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccc--ccCHHHHHHHHHHc-----
Confidence            556666   8999999999986554332     11122234689999999999997642  23334444443332     


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                       .++++++||+++.|+++++++|.+.+...
T Consensus       145 -~~~~~~~Sa~~~~gv~~l~~~l~~~~~~~  173 (181)
T 2fn4_A          145 -HVAYFEASAKLRLNVDEAFEQLVRAVRKY  173 (181)
T ss_dssp             -TCEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             -CCeEEEecCCCCCCHHHHHHHHHHHHHHh
Confidence             25899999999999999999999877654

>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}

Probab=99.93  E-value=1.3e-24  Score=162.74  Aligned_cols=159  Identities=15%  Similarity=0.145  Sum_probs=110.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+++|++..+.....++.+.......+..++   .+.+|||||.          +.|..++.
T Consensus        27 ~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------~~~~~~~~   96 (201)
T 2hup_A           27 DFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQ----------ERFRTITQ   96 (201)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTC----------GGGHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------HhHHHHHH
Confidence            4468999999999999999999998765544445544444334444443   7899999994          34567788


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+.   ..++|+++|+||+|+...  +.+..++.+++.+..+      
T Consensus        97 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~------  165 (201)
T 2hup_A           97 SYYRS---ANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL--REVSLAEAQSLAEHYD------  165 (201)
T ss_dssp             HHHTT---CSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------
T ss_pred             HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc--cccCHHHHHHHHHHcC------
Confidence            88887   89999999999866544321 122222   257999999999999764  2333444555544432      


Q ss_pred             C-CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 P-PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~-~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      . +++++||+++.|+++++++|.+.+..
T Consensus       166 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~  193 (201)
T 2hup_A          166 ILCAIETSAKDSSNVEEAFLRVATELIM  193 (201)
T ss_dssp             CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            4 89999999999999999999887654

>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*

Probab=99.92  E-value=2.1e-24  Score=158.95  Aligned_cols=158  Identities=18%  Similarity=0.238  Sum_probs=114.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+... ......++   .+.+|||||..          .+..+..
T Consensus        16 ~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   84 (183)
T 3kkq_A           16 LPTYKLVVVGDGGVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEIDNQWAILDVLDTAGQE----------EFSAMRE   84 (183)
T ss_dssp             CCEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCSCG----------GGCSSHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeCCcEEEEEEEECCCch----------hhHHHHH
Confidence            4568999999999999999999998765555555555444 33333333   35679999943          2234456


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .+++.   +|++++|+|++++.+.....     +.......++|+++|+||+|+...  +.+..++.+++.+.++     
T Consensus        85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-----  154 (183)
T 3kkq_A           85 QYMRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL--RKVTRDQGKEMATKYN-----  154 (183)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT-----
T ss_pred             HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchhc--cCcCHHHHHHHHHHhC-----
Confidence            66777   89999999999876554421     122233478999999999998763  3445555666666554     


Q ss_pred             CCCeEEeecC-CCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSV-TGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~-~~~~v~el~~~l~~~~~~  216 (219)
                       ++++++||+ ++.|+++++++|.+.+.+
T Consensus       155 -~~~~~~Sa~~~~~~v~~l~~~l~~~i~~  182 (183)
T 3kkq_A          155 -IPYIETSAKDPPLNVDKTFHDLVRVIRQ  182 (183)
T ss_dssp             -CCEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             -CeEEEeccCCCCCCHHHHHHHHHHHHhh
Confidence             689999999 999999999999987653

>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*

Probab=99.92  E-value=2e-24  Score=159.38  Aligned_cols=159  Identities=21%  Similarity=0.192  Sum_probs=113.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.+|||||.          ..+.....
T Consensus         8 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~   77 (186)
T 2bme_A            8 DFLFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAGQ----------ERFRSVTR   77 (186)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCc----------HHHHHHHH
Confidence            3468999999999999999999998765555555555444444444444   6889999994          33456667


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HH---HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CA---NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~---~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+   ......+.|+++|+||+|+...  +.+...+..++.+..      .
T Consensus        78 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~------~  146 (186)
T 2bme_A           78 SYYRG---AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD--REVTFLEASRFAQEN------E  146 (186)
T ss_dssp             TTSTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHT------T
T ss_pred             HHHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc--cccCHHHHHHHHHHc------C
Confidence            77766   89999999999866554432 11   2222468999999999999754  233334444444332      2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|++++++++.+.+..
T Consensus       147 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (186)
T 2bme_A          147 LMFLETSALTGENVEEAFVQCARKILN  173 (186)
T ss_dssp             CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999876543

>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A

Probab=99.92  E-value=1.6e-24  Score=158.83  Aligned_cols=155  Identities=15%  Similarity=0.118  Sum_probs=110.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+||+++|++|+|||||+++|++..+.. +.++.+.... .....++   .+.+|||||...               .
T Consensus         5 ~~~~ki~~vG~~~vGKTsli~~l~~~~~~~-~~~t~~~~~~-~~~~~~~~~~~l~i~Dt~G~~~---------------~   67 (178)
T 2iwr_A            5 IPELRLGVLGDARSGKSSLIHRFLTGSYQV-LEKTESEQYK-KEMLVDGQTHLVLIREEAGAPD---------------A   67 (178)
T ss_dssp             CCEEEEEEECCGGGCHHHHHHHHHHSCCCC-CSSCSSSEEE-EEEEETTEEEEEEEEECSSSCC---------------H
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCC-cCCCcceeEE-EEEEECCEEEEEEEEECCCCch---------------h
Confidence            346899999999999999999999975543 5555554332 2233333   578899999531               2


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHH-HHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      .+++.   +|++|+|+|++++.+...... ..++..      .++|+++|+||+|+.+...+.+..++.+++.+...   
T Consensus        68 ~~~~~---~d~~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~---  141 (178)
T 2iwr_A           68 KFSGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALXADMK---  141 (178)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHS---
T ss_pred             HHHHh---CCEEEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccccCcCCHHHHHHHHHhhc---
Confidence            45556   899999999998776554322 112322      47899999999999644445555666666655442   


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                        ..+++++||++|.|++++|+++.+.+..
T Consensus       142 --~~~~~~~Sa~~~~~i~~lf~~l~~~~~~  169 (178)
T 2iwr_A          142 --RCSYYETXATYGLNVDRVFQEVAQKVVT  169 (178)
T ss_dssp             --SEEEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             --CCeEEEEeccccCCHHHHHHHHHHHHHH
Confidence              1589999999999999999999876543

>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A

Probab=99.92  E-value=9.9e-25  Score=158.48  Aligned_cols=157  Identities=18%  Similarity=0.220  Sum_probs=106.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+.+.....+..++   .+.++||||...          +......+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~   72 (170)
T 1g16_A            3 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQER----------FRTITTAY   72 (170)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTGGG----------TSCCCHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCChh----------hhhhHHHH
Confidence            57999999999999999999998765554555555444444444443   688999999432          12233455


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++++|+|++++.+..... .+..+.   ..+.|+++|+||+|+..   +....+..+++.+..+      .+
T Consensus        73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~------~~  140 (170)
T 1g16_A           73 YRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET---RVVTADQGEALAKELG------IP  140 (170)
T ss_dssp             HTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTT---CCSCHHHHHHHHHHHT------CC
T ss_pred             hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCCc---CccCHHHHHHHHHHcC------Ce
Confidence            555   89999999999866543321 112222   25789999999999943   3334455555555443      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++||+++.|+++++++|.+.+...
T Consensus       141 ~~~~Sa~~~~gv~~l~~~l~~~~~~~  166 (170)
T 1g16_A          141 FIESSAKNDDNVNEIFFTLAKLIQEK  166 (170)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999877653

>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}

Probab=99.92  E-value=6.6e-25  Score=160.99  Aligned_cols=158  Identities=20%  Similarity=0.222  Sum_probs=111.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....+..+.+........++   .+.++||||....          ..+..
T Consensus         7 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   76 (181)
T 3tw8_B            7 DHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF----------RTITS   76 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEETTEEEEEEEEEETTGGGC----------SSCCG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEECCEEEEEEEEcCCCchhh----------hhhHH
Confidence            4468999999999999999999999865555555555555555554444   6899999994321          12234


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .+++.   +|++|+|+|++++.+....  ..|+..     .+.|+++|+||+|+....  .........+.....     
T Consensus        77 ~~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~--~~~~~~~~~~~~~~~-----  144 (181)
T 3tw8_B           77 TYYRG---THGVIVVYDVTSAESFVNV--KRWLHEINQNCDDVCRILVGNKNDDPERK--VVETEDAYKFAGQMG-----  144 (181)
T ss_dssp             GGGTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHCTTSEEEEEEECTTCGGGC--CSCHHHHHHHHHHHT-----
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHHH--HHHHHHHHHhCCCCCEEEEEECCCCchhc--ccCHHHHHHHHHHcC-----
Confidence            44555   8999999999986555432  223332     468999999999987642  233344455554443     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                       ++++++||++|.|+++++++|.+.+...
T Consensus       145 -~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  172 (181)
T 3tw8_B          145 -IQLFETSAKENVNVEEMFNCITELVLRA  172 (181)
T ss_dssp             -CCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             -CeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence             5899999999999999999998876543

>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*

Probab=99.92  E-value=2.7e-24  Score=157.36  Aligned_cols=159  Identities=18%  Similarity=0.149  Sum_probs=112.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||.          ..+..+..
T Consensus         5 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~~   74 (177)
T 1wms_A            5 SSLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQ----------ERFRSLRT   74 (177)
T ss_dssp             EEEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCC----------GGGHHHHG
T ss_pred             cceeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEECCEEEEEEEEeCCCc----------hhhhhhHH
Confidence            3468999999999999999999998765556666666655555555554   6899999994          33456677


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      .+++.   +|++++|+|++++.+..... ....+.       ..+.|+++|+||+|+..   +.+..+...++.+.   .
T Consensus        75 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~---~  145 (177)
T 1wms_A           75 PFYRG---SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRD---N  145 (177)
T ss_dssp             GGGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHH---T
T ss_pred             HHHhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCcccc---cccCHHHHHHHHHh---c
Confidence            77776   89999999999876544321 111111       16789999999999873   23334444444432   1


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                        ...+++++||++|.|++++++++.+.+..
T Consensus       146 --~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~  174 (177)
T 1wms_A          146 --GDYPYFETSAKDATNVAAAFEEAVRRVLA  174 (177)
T ss_dssp             --TCCCEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             --CCceEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence              23689999999999999999999887643

>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*

Probab=99.92  E-value=2.5e-24  Score=158.73  Aligned_cols=158  Identities=16%  Similarity=0.160  Sum_probs=111.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..... .+..++   .+.+|||||..          .+..+..
T Consensus        16 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~   84 (187)
T 2a9k_A           16 LALHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRK-KVVLDGEEVQIDILDTAGQE----------DYAAIRD   84 (187)
T ss_dssp             -CEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCTTCCEEEEE-EEEETTEEEEEEEEECCCTT----------CCHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhhCCCCCcCCCccceEEEE-EEEECCEEEEEEEEECCCCc----------ccHHHHH
Confidence            346899999999999999999999876555555554444332 223333   68899999953          2356677


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH-----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL-----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .+++.   +|++++|+|++++.+....     .+.......++|+++|+||+|+.+..  .+..++..++.+...     
T Consensus        85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~-----  154 (187)
T 2a9k_A           85 NYFRS---GEGFLCVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLEDKR--QVSVEEAKNRAEQWN-----  154 (187)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGGC--CSCHHHHHHHHHHTT-----
T ss_pred             HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccccC--ccCHHHHHHHHHHcC-----
Confidence            78877   8999999999986554332     11222223589999999999997642  233344444444322     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       ++++++||+++.|+++++++|.+.+..
T Consensus       155 -~~~~~~Sa~~~~gi~~l~~~l~~~i~~  181 (187)
T 2a9k_A          155 -VNYVETSAKTRANVDKVFFDLMREIRA  181 (187)
T ss_dssp             -CEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             -CeEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence             589999999999999999999887654

>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*

Probab=99.92  E-value=1.7e-24  Score=157.19  Aligned_cols=155  Identities=18%  Similarity=0.273  Sum_probs=113.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+|+|++..+.....++.+.+........+.   .+.+|||||..          .+..+...+
T Consensus         6 ~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~   75 (170)
T 1z0j_A            6 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLE----------RFRALAPMY   75 (170)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGTHHH
T ss_pred             ceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEECCeEEEEEEEcCCCch----------hhhcccHhh
Confidence            57999999999999999999999876667777777776555444443   68899999962          233455666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++++|+|++++.+.... ..+..+.   ....|+++|+||+|+.+.  +++..+....+.+...      .+
T Consensus        76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------~~  144 (170)
T 1z0j_A           76 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV--REVMERDAKDYADSIH------AI  144 (170)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------CE
T ss_pred             CcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc--cccCHHHHHHHHHHcC------CE
Confidence            666   8999999999987654432 1122222   367899999999999764  2333444444444322      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||+++.|+++++++|.+.+
T Consensus       145 ~~~~Sa~~~~~i~~l~~~i~~~i  167 (170)
T 1z0j_A          145 FVETSAKNAININELFIEISRRI  167 (170)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEEEeCCCCcCHHHHHHHHHHHH
Confidence            99999999999999999998765

>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*

Probab=99.92  E-value=4.3e-24  Score=158.35  Aligned_cols=159  Identities=19%  Similarity=0.195  Sum_probs=114.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE-eeEEEec------------CeEEEEeCCCCCCCCCCcc
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL-INHFLVN------------KSWYIVDLPGYGFAKAPDV  103 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~-~~~~~~~------------~~~~liDtpg~~~~~~~~~  103 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+.. ......+            ..+.++||||.        
T Consensus         9 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~--------   80 (195)
T 3bc1_A            9 DYLIKFLALGDSGVGKTSVLYQYTDGKFNSKFITTVGIDFREKRVVYRANGPDGAVGRGQRIHLQLWDTAGL--------   80 (195)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEECTTSCCCSSCCCEEEEEEEEEECCS--------
T ss_pred             ceeEEEEEECCCCCCHHHHHHHHhcCCCCcCcccccceeeeeEEEEEecCCcccccccCcEEEEEEEeCCCc--------
Confidence            44689999999999999999999987655555555555443 2223222            36899999995        


Q ss_pred             hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHH
Q 027757          104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSF  178 (219)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  178 (219)
                        ..+......+++.   +|++|+|+|++++.+..... .+..+..    .++|+++|+||+|+.+.  +.+..+...++
T Consensus        81 --~~~~~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~  153 (195)
T 3bc1_A           81 --ERFRSLTTAFFRD---AMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ--RAVKEEEAREL  153 (195)
T ss_dssp             --GGGHHHHHHTTTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG--CCSCHHHHHHH
T ss_pred             --HHHHHHHHHHHcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc--cccCHHHHHHH
Confidence              3345667777776   89999999999876654421 1222221    58999999999999764  23344555555


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+..+      ++++++||+++.|+++++++|.+.+..
T Consensus       154 ~~~~~------~~~~~~Sa~~~~~v~~l~~~l~~~~~~  185 (195)
T 3bc1_A          154 AEKYG------IPYFETSAANGTNISHAIEMLLDLIMK  185 (195)
T ss_dssp             HHHHT------CCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHcC------CCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            55443      589999999999999999999886643

>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*

Probab=99.92  E-value=1.6e-24  Score=160.93  Aligned_cols=159  Identities=18%  Similarity=0.170  Sum_probs=110.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.+|||||...          |..+..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~   88 (191)
T 2a5j_A           19 SYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQES----------FRSITR   88 (191)
T ss_dssp             CEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGG----------TSCCCH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchh----------hhhhHH
Confidence            4468999999999999999999999765555555556555544444444   689999999431          223345


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+.   ..+.|+++|+||+|+...  +.+..++.+.+.+..+      
T Consensus        89 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------  157 (191)
T 2a5j_A           89 SYYRG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR--RDVKREEGEAFAREHG------  157 (191)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc--cccCHHHHHHHHHHcC------
Confidence            56666   89999999999866554422 122222   258999999999999754  3334455555555443      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.+.+
T Consensus       158 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  184 (191)
T 2a5j_A          158 LIFMETSAKTACNVEEAFINTAKEIYR  184 (191)
T ss_dssp             CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999876543

>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*

Probab=99.92  E-value=1.3e-24  Score=157.36  Aligned_cols=156  Identities=17%  Similarity=0.208  Sum_probs=108.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+.... .....++   .+.+|||||...          +..+...+
T Consensus         3 ~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~D~~G~~~----------~~~~~~~~   71 (167)
T 1c1y_A            3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYR-KQVEVDCQQCMLEILDTAGTEQ----------FTAMRDLY   71 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEE-EEEESSSCEEEEEEEEECSSCS----------STTHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccceEE-EEEEECCEEEEEEEEECCChHH----------HHHHHHHH
Confidence            479999999999999999999987554444444443332 2222222   588999999532          23455667


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+.....     +.......+.|+++|+||+|+.+.  +.+..+...++.+.+.     ..
T Consensus        72 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-----~~  141 (167)
T 1c1y_A           72 MKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWC-----NC  141 (167)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-----SC
T ss_pred             hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc--ccCCHHHHHHHHHHcc-----CC
Confidence            777   89999999999865544321     112222358999999999999764  2333444554444321     26


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||++|.|+++++++|.+.+.
T Consensus       142 ~~~~~Sa~~~~gi~~l~~~l~~~i~  166 (167)
T 1c1y_A          142 AFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             cEEEecCCCCCCHHHHHHHHHHHHh
Confidence            8999999999999999999988653

>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*

Probab=99.92  E-value=2e-24  Score=160.07  Aligned_cols=158  Identities=20%  Similarity=0.241  Sum_probs=111.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHH-HHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWS-SFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~-~~~  112 (219)
                      ...++|+++|.+|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||.          +.+. .+.
T Consensus        18 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~   87 (189)
T 1z06_A           18 SRIFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQ----------ERFRKSMV   87 (189)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCS----------HHHHTTTH
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCc----------hhhhhhhh
Confidence            4468999999999999999999998766555666666555544444444   6899999994          2334 556


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ..+++.   +|++|+|+|++++.+.....     +.......+.|+++|+||+|+...  +++..+..+.+.+..+    
T Consensus        88 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~----  158 (189)
T 1z06_A           88 QHYYRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS----  158 (189)
T ss_dssp             HHHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT----
T ss_pred             HHHhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc--ceeCHHHHHHHHHHcC----
Confidence            677776   89999999999865544421     122222467999999999999754  2333344444443322    


Q ss_pred             CCCCeEEeecCCC---CChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTG---LGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~---~~v~el~~~l~~~~~  215 (219)
                        ++++++||+++   .|+++++++|.+.+.
T Consensus       159 --~~~~~~Sa~~~~~~~~i~~l~~~l~~~i~  187 (189)
T 1z06_A          159 --MPLFETSAKNPNDNDHVEAIFMTLAHKLK  187 (189)
T ss_dssp             --CCEEECCSSSGGGGSCHHHHHHHHC----
T ss_pred             --CEEEEEeCCcCCcccCHHHHHHHHHHHHh
Confidence              58999999999   999999999977653

>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8

Probab=99.92  E-value=3.6e-24  Score=160.34  Aligned_cols=157  Identities=15%  Similarity=0.193  Sum_probs=116.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+........+.   .+.+|||||.          ..+..+...
T Consensus         7 ~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~~~~~~   76 (203)
T 1zbd_A            7 YMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGL----------ERYRTITTA   76 (203)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------GGGHHHHHT
T ss_pred             eeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCc----------hhhcchHHH
Confidence            357999999999999999999999866566666666666544444433   6899999995          234667777


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +++.   +|++|+|+|++++.+..... .+..+..   .+.|+++|+||+|+...  +.+..+..+++.+.++      +
T Consensus        77 ~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~  145 (203)
T 1zbd_A           77 YYRG---AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG------F  145 (203)
T ss_dssp             TGGG---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTTS--CCSCHHHHHHHHHHHT------C
T ss_pred             hhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCcc--cccCHHHHHHHHHHCC------C
Confidence            7777   89999999999865543321 1122222   57999999999999754  2334455555555543      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||+++.|+++++++|.+.+.
T Consensus       146 ~~~~~Sa~~~~gi~~l~~~l~~~i~  170 (203)
T 1zbd_A          146 EFFEASAKDNINVKQTFERLVDVIC  170 (203)
T ss_dssp             EEEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999987654

>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*

Probab=99.92  E-value=9.1e-25  Score=160.01  Aligned_cols=158  Identities=17%  Similarity=0.118  Sum_probs=111.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ..++|+++|++|+|||||+++|++..+...+.++.+..........+    ..+.+|||||...          +..+..
T Consensus         5 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~----------~~~~~~   74 (178)
T 2hxs_A            5 RQLKIVVLGDGASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPGNLNVTLQIWDIGGQTI----------GGKMLD   74 (178)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETTTEEEEEEEEECTTCCT----------TCTTHH
T ss_pred             ceEEEEEECcCCCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCCCCEEEEEEEECCCCcc----------ccchhh
Confidence            46899999999999999999999976555555665544444434333    3789999999532          223456


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc-----CCCc-EEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR-----NNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+..     .+.| +++|+||+|+.+.  +.+..+..+++.+..+   
T Consensus        75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~~---  146 (178)
T 2hxs_A           75 KYIYG---AQGVLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM--RTIKPEKHLRFCQENG---  146 (178)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT---
T ss_pred             HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc--cccCHHHHHHHHHHcC---
Confidence            66666   89999999999876654432 1222222     2455 8999999999764  2333445555555443   


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                         ++++++||+++.|+++++++|.+.+..
T Consensus       147 ---~~~~~~Sa~~~~gi~~l~~~l~~~~~~  173 (178)
T 2hxs_A          147 ---FSSHFVSAKTGDSVFLCFQKVAAEILG  173 (178)
T ss_dssp             ---CEEEEECTTTCTTHHHHHHHHHHHHTT
T ss_pred             ---CcEEEEeCCCCCCHHHHHHHHHHHHHh
Confidence               589999999999999999999887654

>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=6.7e-25  Score=162.93  Aligned_cols=160  Identities=16%  Similarity=0.190  Sum_probs=118.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+||+|+|.+|+|||||+++|++..+.....++.+.+........+.   .+.+|||||          ++.+..+..
T Consensus        21 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~~~~   90 (191)
T 3dz8_A           21 DYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAG----------QERYRTITT   90 (191)
T ss_dssp             EECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHH----------HHHCHHHHH
T ss_pred             CeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCC----------hHHHHHHHH
Confidence            4478999999999999999999999765555555555555544444333   588999987          455677788


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+.   ..+.|+++|+||+|+...  +.+..+..+.+.+..+      
T Consensus        91 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------  159 (191)
T 3dz8_A           91 AYYRG---AMGFILMYDITNEESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE--RVVPTEKGQLLAEQLG------  159 (191)
T ss_dssp             HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------
T ss_pred             HHHcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC------
Confidence            88887   89999999999865554322 122222   258999999999998654  3344455555555543      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++++||++|.|+++++++|.+.+...
T Consensus       160 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  187 (191)
T 3dz8_A          160 FDFFEASAKENISVRQAFERLVDAICDK  187 (191)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            5899999999999999999998876543

>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}

Probab=99.92  E-value=1.3e-23  Score=160.33  Aligned_cols=171  Identities=19%  Similarity=0.150  Sum_probs=107.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE--e-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL--V-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~--~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+|+|++..+.  ..+.++++.......  . +..+.+|||||.............+..+. 
T Consensus        27 ~~~~kI~vvG~~~vGKSsLin~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~-  103 (228)
T 2qu8_A           27 PHKKTIILSGAPNVGKSSFMNIVSRANVD--VQSYSFTTKNLYVGHFDHKLNKYQIIDTPGLLDRAFENRNTIEMTTIT-  103 (228)
T ss_dssp             TTSEEEEEECSTTSSHHHHHHHHTTTCEE--EECC-----CEEEEEEEETTEEEEEEECTTTTTSCGGGCCHHHHHHHH-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCCc--cCCCCCcceeeeeeeeecCCCeEEEEECCCCcCcccchhhhHHHHHHH-
Confidence            55789999999999999999999997533  344455554433222  2 24789999999753221111111133332 


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH---HHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL---DCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~---~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .++..   +|++|+|+|++++.+....   ..+..+...  ++|+++|+||+|+.....  .... ..+..+.+....+.
T Consensus       104 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~~~--~~~~-~~~~~~~~~~~~~~  177 (228)
T 2qu8_A          104 ALAHI---NGVILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNMDS--LSID-NKLLIKQILDNVKN  177 (228)
T ss_dssp             HHHTS---SEEEEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC--C--CCHH-HHHHHHHHHHHCCS
T ss_pred             Hhhcc---ccEEEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCchh--hHHH-HHHHHHHHHHhcCC
Confidence            33444   7999999999998775422   233444443  899999999999976432  2222 22223333322222


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .++++++||++|.|+++++++|.+.+..
T Consensus       178 ~~~~~~~SA~~g~gi~~l~~~l~~~i~~  205 (228)
T 2qu8_A          178 PIKFSSFSTLTGVGVEQAKITACELLKN  205 (228)
T ss_dssp             CEEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CceEEEEecccCCCHHHHHHHHHHHHHH
Confidence            3589999999999999999999887654

>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0

Probab=99.92  E-value=3.4e-24  Score=158.41  Aligned_cols=160  Identities=14%  Similarity=0.115  Sum_probs=113.5

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHH
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSS  110 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~  110 (219)
                      .+....+||+++|++|+|||||+++|++..+.....++.+ .. ......++   .+.+|||||...          +. 
T Consensus        15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~-~~-~~~~~~~~~~~~l~i~Dt~G~~~----------~~-   81 (184)
T 3ihw_A           15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGG-RF-KKEIVVDGQSYLLLIRDEGGPPE----------LQ-   81 (184)
T ss_dssp             -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCE-EE-EEEEEETTEEEEEEEEECSSSCC----------HH-
T ss_pred             CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcc-eE-EEEEEECCEEEEEEEEECCCChh----------hh-
Confidence            3445678999999999999999999999866555555422 22 22333333   567899999531          12 


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          111 FTKGYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                          +++.   +|++++|+|++++.+.... ..+..+..    .+.|+++|+||+|+.....+.+..++.+++.+.++. 
T Consensus        82 ----~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~-  153 (184)
T 3ihw_A           82 ----FAAW---VDAVVFVFSLEDEISFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKLSTDLKR-  153 (184)
T ss_dssp             ----HHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTT-
T ss_pred             ----eecC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccccccccCHHHHHHHHHHcCC-
Confidence                5555   8999999999987665542 22222222    468999999999997555566666666666655431 


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                          .+++++||+++.|++++|+++.+.+...+
T Consensus       154 ----~~~~e~Sa~~~~gv~~lf~~l~~~i~~~~  182 (184)
T 3ihw_A          154 ----CTYYETCATYGLNVERVFQDVAQKVVALR  182 (184)
T ss_dssp             ----CEEEEEBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred             ----CeEEEecCCCCCCHHHHHHHHHHHHHHHh
Confidence                58999999999999999999998766543

>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*

Probab=99.92  E-value=1.4e-24  Score=160.84  Aligned_cols=159  Identities=16%  Similarity=0.195  Sum_probs=114.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+........+.   .+.+|||||....          .....
T Consensus        20 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~   89 (189)
T 2gf9_A           20 DYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERY----------RTITT   89 (189)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSS----------CCSGG
T ss_pred             CceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHH----------hhhHH
Confidence            3468999999999999999999999866566666666665544444333   6899999995422          11224


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+..   .+.|+++|+||+|+...  +.+..+..+++.+.++      
T Consensus        90 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------  158 (189)
T 2gf9_A           90 AYYRG---AMGFLLMYDIANQESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE--RVVPAEDGRRLADDLG------  158 (189)
T ss_dssp             GGGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------
T ss_pred             HhccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc--cCCCHHHHHHHHHHcC------
Confidence            45555   89999999999866554431 2222222   47999999999999764  3334455556655543      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.+.+
T Consensus       159 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~  185 (189)
T 2gf9_A          159 FEFFEASAKENINVKQVFERLVDVICE  185 (189)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999887644

>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}

Probab=99.92  E-value=1.1e-24  Score=162.49  Aligned_cols=167  Identities=14%  Similarity=0.164  Sum_probs=108.2

Q ss_pred             CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      ..+....++|+|+|.+|+|||||+++|++..+.. .+.++.+.+... .......+.+|||||..          .+..+
T Consensus        11 ~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~i~Dt~G~~----------~~~~~   79 (199)
T 4bas_A           11 MGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVET-FEKGRVAFTVFDMGGAK----------KFRGL   79 (199)
T ss_dssp             -----CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEE-EEETTEEEEEEEECCSG----------GGGGG
T ss_pred             ccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEE-EEeCCEEEEEEECCCCH----------hHHHH
Confidence            3445667899999999999999999999986554 446666633322 12223478999999953          23344


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc-----------CCCcEEEEEEcccccccccCCCchHhHHHHH
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR-----------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                      +..+++.   +|++|+|+|++++.+.... ..+..+..           .++|+++|+||+|+.....    .+++.+..
T Consensus        80 ~~~~~~~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~~----~~~~~~~~  152 (199)
T 4bas_A           80 WETYYDN---IDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGAKT----AAELVEIL  152 (199)
T ss_dssp             GGGGCTT---CSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTCCC----HHHHHHHH
T ss_pred             HHHHHhc---CCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCCCC----HHHHHHHh
Confidence            4566665   8999999999987765443 11222222           2899999999999976421    12222221


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ..........++++++||+++.|+++++++|.+.+...
T Consensus       153 ~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  190 (199)
T 4bas_A          153 DLTTLMGDHPFVIFASNGLKGTGVHEGFSWLQETASRQ  190 (199)
T ss_dssp             THHHHHTTSCEEEEECBTTTTBTHHHHHHHHHHHHHHH
T ss_pred             cchhhccCCeeEEEEeeCCCccCHHHHHHHHHHHHHHH
Confidence            11110012346899999999999999999999876543

>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=1.4e-24  Score=161.40  Aligned_cols=156  Identities=20%  Similarity=0.292  Sum_probs=114.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.+........+.   .+.+|||||..          .+.....
T Consensus        21 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~   90 (192)
T 2fg5_A           21 IRELKVCLLGDTGVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCGNELHKFLIWDTAGQE----------RFHSLAP   90 (192)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECSSSEEEEEEEEECCSG----------GGGGGTH
T ss_pred             CCceEEEEECcCCCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeCCEEEEEEEEcCCCch----------hhHhhhH
Confidence            3468999999999999999999999866667778888776655554433   68999999942          2334456


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .+++.   +|++|+|+|++++.+....  ..|+.      ..++|+++|+||+|+.+.  +.+..++.+++.+..     
T Consensus        91 ~~~~~---~d~iilV~d~~~~~s~~~~--~~~~~~i~~~~~~~~piiiv~NK~Dl~~~--~~v~~~~~~~~~~~~-----  158 (192)
T 2fg5_A           91 MYYRG---SAAAVIVYDITKQDSFYTL--KKWVKELKEHGPENIVMAIAGNKCDLSDI--REVPLKDAKEYAESI-----  158 (192)
T ss_dssp             HHHTT---CSEEEEEEETTCTHHHHHH--HHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHTT-----
T ss_pred             Hhhcc---CCEEEEEEeCCCHHHHHHH--HHHHHHHHHhCCCCCcEEEEEECcccccc--cccCHHHHHHHHHHc-----
Confidence            66666   8999999999987654432  22322      247999999999999753  233334444444322     


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       .++++++||+++.|+++++++|.+.+.
T Consensus       159 -~~~~~~~Sa~~~~gi~~l~~~l~~~i~  185 (192)
T 2fg5_A          159 -GAIVVETSAKNAINIEELFQGISRQIP  185 (192)
T ss_dssp             -TCEEEECBTTTTBSHHHHHHHHHHTCC
T ss_pred             -CCEEEEEeCCCCcCHHHHHHHHHHHHH
Confidence             268999999999999999999987653

>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}

Probab=99.92  E-value=3e-24  Score=160.45  Aligned_cols=158  Identities=20%  Similarity=0.173  Sum_probs=109.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--------------------------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--------------------------------   84 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--------------------------------   84 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+..........+                                
T Consensus         5 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (208)
T 3clv_A            5 KSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTIGASFCTYVVNLNDINIKNNSNNEKNNNINSINDDNNVIITNQHN   84 (208)
T ss_dssp             CSSEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSCEEEEEEEETTC-------------------------------
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCcCCCCcCccccceeEEEEEEecCccccccccccccccccccccccccccccccc
Confidence            457899999999999999999999986555555555443332222221                                


Q ss_pred             --------CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-cCCCcEE
Q 027757           85 --------KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-RNNIPLT  154 (219)
Q Consensus        85 --------~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-~~~~p~i  154 (219)
                              ..+.+|||||..          .|......+++.   +|++|+|+|++++.+..... .+..+. ....|++
T Consensus        85 ~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~---~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~pii  151 (208)
T 3clv_A           85 NYNENLCNIKFDIWDTAGQE----------RYASIVPLYYRG---ATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIII  151 (208)
T ss_dssp             CCCTTTCEEEEEEEECTTGG----------GCTTTHHHHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEE
T ss_pred             cccCccceeEEEEEECCCcH----------HHHHHHHHHhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEE
Confidence                    468899999942          223445666666   89999999999876554422 122222 2459999


Q ss_pred             EEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          155 FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       155 iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +|+||+| ...  +.+..++..++.+..      .++++++||+++.|+++++++|.+.+.+
T Consensus       152 lv~NK~D-~~~--~~~~~~~~~~~~~~~------~~~~~~~Sa~~~~~i~~l~~~l~~~~~~  204 (208)
T 3clv_A          152 LVANKID-KNK--FQVDILEVQKYAQDN------NLLFIQTSAKTGTNIKNIFYMLAEEIYK  204 (208)
T ss_dssp             EEEECTT-CC---CCSCHHHHHHHHHHT------TCEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             EEEECCC-ccc--ccCCHHHHHHHHHHc------CCcEEEEecCCCCCHHHHHHHHHHHHHH
Confidence            9999999 322  333444555554442      2589999999999999999999887654

>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*

Probab=99.92  E-value=2.8e-25  Score=163.32  Aligned_cols=159  Identities=19%  Similarity=0.177  Sum_probs=112.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.+. ......++   .+.+|||||.....          .+..
T Consensus         4 ~~~~ki~~~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~----------~~~~   72 (181)
T 3t5g_A            4 SKSRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVNGQEYHLQLVDTAGQDEYS----------IFPQ   72 (181)
T ss_dssp             EEEEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEETTEEEEEEEEECCCCCTTC----------CCCG
T ss_pred             CceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEECCEEEEEEEEeCCCchhhh----------HHHH
Confidence            4468999999999999999999997766666777776655 33333343   57899999964321          1223


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .+++.   +|++++|+|++++.+.....     +.......++|+++|+||+|+...  +.+..++.+++.+.++     
T Consensus        73 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-----  142 (181)
T 3t5g_A           73 TYSID---INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME--RVISYEEGKALAESWN-----  142 (181)
T ss_dssp             GGTTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT-----
T ss_pred             HHHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchhc--ceecHHHHHHHHHHhC-----
Confidence            44555   89999999999866554321     122222357999999999998653  3344455555555443     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                       .+++++||+++.|++++++++.+.+...
T Consensus       143 -~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  170 (181)
T 3t5g_A          143 -AAFLESSAKENQTAVDVFRRIILEAEKM  170 (181)
T ss_dssp             -CEEEECCTTSHHHHHHHHHHHHHHHHTC
T ss_pred             -CcEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence             5899999999999999999999877654

>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*

Probab=99.92  E-value=2.5e-24  Score=156.40  Aligned_cols=159  Identities=15%  Similarity=0.106  Sum_probs=101.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|++...........+..........++   .+.+|||||.....         ..+...+
T Consensus         2 ~~ki~ivG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~---------~~~~~~~   72 (169)
T 3q85_A            2 VFKVMLVGESGVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEVTLIVYDIWEQGDAG---------GWLQDHC   72 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCC------------CEEEEEEEETTEEEEEEEECCCCC-----------------CHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEECCeEEEEEEEECCCccccc---------hhhhhhh
Confidence            47999999999999999999997643333333333333333333333   67899999964211         1134455


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+..... .+..+.    ..++|+++|+||+|+.+.  +.+..+..+++.+..+      .
T Consensus        73 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~  141 (169)
T 3q85_A           73 LQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS------C  141 (169)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------C
T ss_pred             hcc---CCEEEEEEECCChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc--ccCCHHHHHHHHHHcC------C
Confidence            566   89999999999866554431 111111    137999999999999754  3344455555544432      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++++||+++.|++++++++.+.+...
T Consensus       142 ~~~~~Sa~~~~~v~~l~~~l~~~i~~~  168 (169)
T 3q85_A          142 KHIETSAALHHNTRELFEGAVRQIRLR  168 (169)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             cEEEecCccCCCHHHHHHHHHHHHHhc
Confidence            899999999999999999999877654

>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*

Probab=99.92  E-value=2.5e-24  Score=156.21  Aligned_cols=155  Identities=18%  Similarity=0.222  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+.+........+.   .+.++||||..          .+......+
T Consensus         6 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~G~~----------~~~~~~~~~   75 (170)
T 1r2q_A            6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQE----------RYHSLAPMY   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGHHHH
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEeCCCcH----------HhhhhhHHh
Confidence            57999999999999999999998766666667777666554444433   68999999942          234455666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|++++.+..... .+..+.   ..+.|+++|+||+|+.+.  +....++..++....      ..+
T Consensus        76 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~~~~~~~~~~~~~~------~~~  144 (170)
T 1r2q_A           76 YRG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK--RAVDFQEAQSYADDN------SLL  144 (170)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHT------TCE
T ss_pred             ccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc--cccCHHHHHHHHHHc------CCe
Confidence            766   89999999999875543321 111121   257899999999999754  223334444444332      258


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|+++++++|.+.+
T Consensus       145 ~~~~Sa~~g~gi~~l~~~i~~~~  167 (170)
T 1r2q_A          145 FMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTS
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999998754

>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=6.3e-24  Score=155.78  Aligned_cols=160  Identities=19%  Similarity=0.197  Sum_probs=108.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ...++|+++|.+|+|||||+++|++..+.. ...++.+.+........++   .+.+|||||..          .+..+.
T Consensus         8 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~   77 (180)
T 2g6b_A            8 DVAFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQE----------RFRSVT   77 (180)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC-----------------
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHH
Confidence            346899999999999999999999975432 3344444444433333443   68999999943          234455


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ..+++.   +|++|+|+|++++.+..... .+..+.   ..+.|+++|+||+|+...  +.+..+..+++.+..+     
T Consensus        78 ~~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-----  147 (180)
T 2g6b_A           78 HAYYRD---AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG-----  147 (180)
T ss_dssp             -CCGGG---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT-----
T ss_pred             HHHccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCcc--cccCHHHHHHHHHHcC-----
Confidence            666666   89999999999876544321 112222   267999999999999764  2333445555555443     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                       ++++++||+++.|++++++++.+.+...
T Consensus       148 -~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  175 (180)
T 2g6b_A          148 -LPFMETSAKTGLNVDLAFTAIAKELKRR  175 (180)
T ss_dssp             -CCEEECCTTTCTTHHHHHHHHHHHHHC-
T ss_pred             -CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence             5899999999999999999998876543

>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*

Probab=99.92  E-value=6.1e-25  Score=166.20  Aligned_cols=163  Identities=13%  Similarity=0.055  Sum_probs=114.3

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      +....+||+++|.+|+|||||+++|++..+...+.++.+.+........+  ..+.+|||||..          .|..+.
T Consensus        23 ~~~~~~ki~vvG~~~vGKSsL~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~   92 (214)
T 3q3j_B           23 PVVARCKLVLVGDVQCGKTAMLQVLAKDCYPETYVPTVFENYTACLETEEQRVELSLWDTSGSP----------YYDNVR   92 (214)
T ss_dssp             ----CEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEC--CEEEEEEEEECCSG----------GGTTTG
T ss_pred             CccceEEEEEECcCCCCHHHHHHHHhcCCCCCCcCCeeeeeEEEEEEECCEEEEEEEEECCCCH----------hHHHHH
Confidence            34567899999999999999999999986665556666554432222112  268899999942          233455


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCccc-H-HHHHHhcc--CCCcEEEEEEccccccc----------ccCCCchHhHHHH
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKID-L-DCANWLGR--NNIPLTFVFTKCDKMKV----------AKGRRPDENIKSF  178 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~-~-~~~~~~~~--~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~  178 (219)
                      ..+++.   +|++|+|+|++++.+... . .....+..  .+.|+++|+||+|+...          ..+.+..++...+
T Consensus        93 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  169 (214)
T 3q3j_B           93 PLCYSD---SDAVLLCFDISRPETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAI  169 (214)
T ss_dssp             GGGCTT---CSEEEEEEETTCTHHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HHHcCC---CeEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHH
Confidence            666666   899999999998766544 1 12222222  48999999999999753          1244555666666


Q ss_pred             HHHHHhcCCCCC-CeEEeecCCCCC-hHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHP-PWIMTSSVTGLG-RDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~-~~~~~Sa~~~~~-v~el~~~l~~~~~~  216 (219)
                      .+.++      + +++++||+++.| ++++|+++.+.+..
T Consensus       170 ~~~~~------~~~~~e~SA~~g~g~v~~lf~~l~~~~~~  203 (214)
T 3q3j_B          170 AKQLG------AEIYLEGSAFTSEKSIHSIFRTASMLCLN  203 (214)
T ss_dssp             HHHHT------CSEEEECCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             HHHcC------CCEEEEeccCCCcccHHHHHHHHHHHHhc
Confidence            66654      4 899999999998 99999999887654

>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=2.9e-24  Score=156.17  Aligned_cols=156  Identities=17%  Similarity=0.191  Sum_probs=108.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+|+|++..+.....++.+.+... ....+.   .+.++||||..          .+..+...+
T Consensus         3 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~   71 (172)
T 2erx_A            3 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQ-VISCDKSICTLQITDTTGSH----------QFPAMQRLS   71 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEE-EEEETTEEEEEEEEECCSCS----------SCHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCCccccEEE-EEEECCEEEEEEEEECCCch----------hhHHHHHHh
Confidence            5799999999999999999999875544444444433322 222222   58999999953          234566777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-HHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +..   +|++++|+|++++.+.... .....+..     .+.|+++|+||+|+.+..  ++.....+.+.....      
T Consensus        72 ~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~--~v~~~~~~~~~~~~~------  140 (172)
T 2erx_A           72 ISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSR--EVQSSEAEALARTWK------  140 (172)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGC--CSCHHHHHHHHHHHT------
T ss_pred             ccc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEcccccccc--ccCHHHHHHHHHHhC------
Confidence            777   8999999999986554332 22222222     478999999999997653  233344444444332      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.++.
T Consensus       141 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  167 (172)
T 2erx_A          141 CAFMETSAKLNHNVKELFQELLNLEKR  167 (172)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             CeEEEecCCCCcCHHHHHHHHHHHHhh
Confidence            589999999999999999999987654

>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*

Probab=99.92  E-value=1.5e-24  Score=159.24  Aligned_cols=162  Identities=16%  Similarity=0.202  Sum_probs=105.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+.....+..+    ..+.+|||||..          .+....
T Consensus         6 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~   75 (182)
T 1ky3_A            6 KNILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSLG   75 (182)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC-------------------
T ss_pred             CceEEEEEECCCCCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcCCcEEEEEEEECCCCh----------Hhhhhh
Confidence            446899999999999999999999976555555555544444444333    268999999942          234455


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE  184 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  184 (219)
                      ..+++.   +|++|+|+|++++.+..... ....+.       ..++|+++|+||+|+.... +.+..++..++.+..  
T Consensus        76 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~-~~v~~~~~~~~~~~~--  149 (182)
T 1ky3_A           76 VAFYRG---ADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSL--  149 (182)
T ss_dssp             -CCSTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHT--
T ss_pred             HHHhhc---CCEEEEEEECCChHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc-ccCCHHHHHHHHHhc--
Confidence            556655   89999999999876544421 111111       1678999999999996442 233344444444321  


Q ss_pred             cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                         ...+++++||+++.|+++++++|.+.+...
T Consensus       150 ---~~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  179 (182)
T 1ky3_A          150 ---GDIPLFLTSAKNAINVDTAFEEIARSALQQ  179 (182)
T ss_dssp             ---TSCCEEEEBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             ---CCCeEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence               236899999999999999999998876543

>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*

Probab=99.92  E-value=1.3e-24  Score=157.95  Aligned_cols=155  Identities=21%  Similarity=0.244  Sum_probs=107.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.+|||||..          .+..+...
T Consensus         5 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~   74 (170)
T 1z08_A            5 YSFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE----------RFHALGPI   74 (170)
T ss_dssp             EEEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CC
T ss_pred             cceEEEEECcCCCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEECCEEEEEEEEECCCcH----------hhhhhHHH
Confidence            357999999999999999999998765555555655554444444433   68899999943          22334444


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +++.   +|++++|+|++++.+....  ..|+.      ..+.|+++|+||+|+.+.  +.+..++.+++.+..+     
T Consensus        75 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~-----  142 (170)
T 1z08_A           75 YYRD---SNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEKE--RHVSIQEAESYAESVG-----  142 (170)
T ss_dssp             SSTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHHGGGSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT-----
T ss_pred             Hhcc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCeEEEEEECcccccc--cccCHHHHHHHHHHcC-----
Confidence            5555   8999999999986554332  22222      257899999999999764  2333444555444322     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       .+++++||+++.|+++++++|.+.+.
T Consensus       143 -~~~~~~Sa~~~~gi~~l~~~l~~~~~  168 (170)
T 1z08_A          143 -AKHYHTSAKQNKGIEELFLDLCKRMI  168 (170)
T ss_dssp             -CEEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             -CeEEEecCCCCCCHHHHHHHHHHHHh
Confidence             58999999999999999999988664

>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*

Probab=99.92  E-value=2e-24  Score=158.57  Aligned_cols=159  Identities=17%  Similarity=0.239  Sum_probs=112.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+........+.   .+.+|||||..          .+.....
T Consensus        10 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~   79 (181)
T 2efe_B           10 SINAKLVLLGDVGAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVNDATVKFEIWDTAGQE----------RYHSLAP   79 (181)
T ss_dssp             CEEEEEEEECCTTSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEETTEEEEEEEEECCCSG----------GGGGGTH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEECCEEEEEEEEeCCCCh----------hhhhhhH
Confidence            3457999999999999999999999865555555556555444444433   68999999942          2344556


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+.... ..+..+.   ..+.|+++|+||+|+.+.  .++..++..++.+...      
T Consensus        80 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~--~~~~~~~~~~~~~~~~------  148 (181)
T 2efe_B           80 MYYRG---AAAAIIVFDVTNQASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA--RKVTAEDAQTYAQENG------  148 (181)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT------
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc--ccCCHHHHHHHHHHcC------
Confidence            66666   8999999999986654332 1122222   247899999999999754  2333444444444322      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.+..
T Consensus       149 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~  175 (181)
T 2efe_B          149 LFFMETSAKTATNVKEIFYEIARRLPR  175 (181)
T ss_dssp             CEEEECCSSSCTTHHHHHHHHHHTCC-
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            589999999999999999999886544

>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*

Probab=99.92  E-value=2.3e-24  Score=161.87  Aligned_cols=160  Identities=18%  Similarity=0.184  Sum_probs=112.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||....          ..+..
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~~   75 (206)
T 2bcg_Y            6 DYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQERF----------RTITS   75 (206)
T ss_dssp             SEEEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCG
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEeCCChHHH----------HHHHH
Confidence            3468999999999999999999999866555556666555544444444   6899999995421          12234


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+.   ..+.|+++|+||+|+...  +.+..+....+.+..+      
T Consensus        76 ~~~~~---~d~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------  144 (206)
T 2bcg_Y           76 SYYRG---SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK------  144 (206)
T ss_dssp             GGGTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT------
T ss_pred             HhccC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc--cccCHHHHHHHHHHcC------
Confidence            45555   89999999999876554321 111121   357899999999999764  2233344444443322      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      .+++++||++|.|+++++++|.+.+...
T Consensus       145 ~~~~~~Sa~~g~gi~~l~~~l~~~i~~~  172 (206)
T 2bcg_Y          145 MPFLETSALDSTNVEDAFLTMARQIKES  172 (206)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            5899999999999999999998876543

>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*

Probab=99.92  E-value=1.7e-24  Score=156.96  Aligned_cols=157  Identities=18%  Similarity=0.203  Sum_probs=111.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.++||||...          +..+...
T Consensus         4 ~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~   73 (168)
T 1z2a_A            4 VAIKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE----------FDAITKA   73 (168)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG----------TTCCCHH
T ss_pred             eeEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEECCEEEEEEEEcCCCcHh----------HHHHHHH
Confidence            467999999999999999999999765555555555554444444433   689999999431          2233455


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +++.   +|++++|+|++++.+..... ....+..  .+.|+++|+||+|+...  +....++.+++.+..+      .+
T Consensus        74 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~~  142 (168)
T 1z2a_A           74 YYRG---AQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK------LR  142 (168)
T ss_dssp             HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT------CE
T ss_pred             HhcC---CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc--cccCHHHHHHHHHHcC------Ce
Confidence            6665   89999999999865544321 1111211  58999999999999764  2233455555555443      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||+++.|+++++++|.+.+.
T Consensus       143 ~~~~Sa~~~~~i~~l~~~l~~~~~  166 (168)
T 1z2a_A          143 FYRTSVKEDLNVSEVFKYLAEKHL  166 (168)
T ss_dssp             EEECBTTTTBSSHHHHHHHHHHHH
T ss_pred             EEEEecCCCCCHHHHHHHHHHHHh
Confidence            999999999999999999987654

>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*

Probab=99.92  E-value=4.4e-24  Score=157.74  Aligned_cols=155  Identities=17%  Similarity=0.235  Sum_probs=108.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+|+|++..+.....++...... .....++   .+.+|||||...          +..+...+
T Consensus         4 ~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~   72 (189)
T 4dsu_A            4 EYKLVVVGADGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE----------YSAMRDQY   72 (189)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCCCCCTTCCEEEE-EEEEETTEEEEEEEEECCCC-------------CTTHHHH
T ss_pred             EEEEEEECCCCCCHHHHHHHHHhCCCCCCCCCCchheEE-EEEEECCcEEEEEEEECCCcHH----------HHHHHHHH
Confidence            579999999999999999999987654444444433222 2223333   467899999532          23455667


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.+.....     +.......+.|+++|+||+|+..   .....+..+.+.+.++      .
T Consensus        73 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~---~~~~~~~~~~~~~~~~------~  140 (189)
T 4dsu_A           73 MRT---GEGFLCVFAINNTKSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS---RTVDTKQAQDLARSYG------I  140 (189)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS---CSSCHHHHHHHHHHHT------C
T ss_pred             Hhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc---cccCHHHHHHHHHHcC------C
Confidence            777   89999999999865543321     11222235899999999999974   2334455555555543      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||++|.|+++++++|.+.+..
T Consensus       141 ~~~~~Sa~~g~gi~~l~~~l~~~~~~  166 (189)
T 4dsu_A          141 PFIETSAKTRQGVDDAFYTLVREIRK  166 (189)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            89999999999999999999887654

>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*

Probab=99.92  E-value=3.8e-24  Score=161.90  Aligned_cols=157  Identities=18%  Similarity=0.267  Sum_probs=111.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------cCeEEEEeCCCCCCCCCCcc
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------NKSWYIVDLPGYGFAKAPDV  103 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~~~~~liDtpg~~~~~~~~~  103 (219)
                      ...++|+|+|.+|+|||||+++|++..+.....++.+.......+..             ...+.+|||||         
T Consensus        23 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G---------   93 (217)
T 2f7s_A           23 DYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG---------   93 (217)
T ss_dssp             SEEEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES---------
T ss_pred             ceeEEEEEECcCCCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCC---------
Confidence            44689999999999999999999987554333333332222222222             23588999998         


Q ss_pred             hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHH
Q 027757          104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIK  176 (219)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~  176 (219)
                       +..|..++..+++.   +|++|+|+|++++.+....  ..|+..       .++|+++|+||+|+...  +.+..+..+
T Consensus        94 -~~~~~~~~~~~~~~---~d~iilV~D~~~~~s~~~~--~~~l~~i~~~~~~~~~piilV~NK~Dl~~~--~~v~~~~~~  165 (217)
T 2f7s_A           94 -QERFRSLTTAFFRD---AMGFLLMFDLTSQQSFLNV--RNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNERQAR  165 (217)
T ss_dssp             -HHHHHHHHHHHHTT---CCEEEEEEETTCHHHHHHH--HHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCHHHHH
T ss_pred             -cHhHHhHHHHHhcC---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCcCCCCEEEEEECCccccc--cccCHHHHH
Confidence             44567778888877   8999999999986654332  334432       57899999999999764  233344455


Q ss_pred             HHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          177 SFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       177 ~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++.+...      ++++++||+++.|+++++++|.+.+..
T Consensus       166 ~~~~~~~------~~~~~~Sa~~g~gi~~l~~~l~~~i~~  199 (217)
T 2f7s_A          166 ELADKYG------IPYFETSAATGQNVEKAVETLLDLIMK  199 (217)
T ss_dssp             HHHHHTT------CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHHHCC------CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            5544332      589999999999999999999886543

>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.92  E-value=9.6e-24  Score=157.29  Aligned_cols=159  Identities=20%  Similarity=0.167  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ....++|+++|.+|+|||||+++|++..+...+.++.+..... ....+   ..+.+|||||...           ..+.
T Consensus        25 ~~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~-----------~~~~   92 (196)
T 2atv_A           25 KSAEVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRH-QATIDDEVVSMEILDTAGQED-----------TIQR   92 (196)
T ss_dssp             --CCEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCCCC-----------CHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHHhCCCCcccCCCCCceEEE-EEEECCEEEEEEEEECCCCCc-----------ccch
Confidence            3457899999999999999999999986655555555544322 22233   3588999999642           2345


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ..+++.   +|++++|+|++++.+..... ....+    ...++|+++|+||+|+...  +.+..++..++.+.+.    
T Consensus        93 ~~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~--~~v~~~~~~~~~~~~~----  163 (196)
T 2atv_A           93 EGHMRW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS--RQVSTEEGEKLATELA----  163 (196)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT----
T ss_pred             hhhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc--cccCHHHHHHHHHHhC----
Confidence            666776   89999999999866554421 11222    2368999999999999764  3344455555555443    


Q ss_pred             CCCCeEEeecCCCC-ChHHHHHHHHHHHhhh
Q 027757          188 HHPPWIMTSSVTGL-GRDELLLHMSQLRNYW  217 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~-~v~el~~~l~~~~~~~  217 (219)
                        ++++++||+++. |+++++++|.+.+.+.
T Consensus       164 --~~~~~~Sa~~g~~gi~~l~~~l~~~i~~~  192 (196)
T 2atv_A          164 --CAFYECSACTGEGNITEIFYELCREVRRR  192 (196)
T ss_dssp             --SEEEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             --CeEEEECCCcCCcCHHHHHHHHHHHHHhh
Confidence              689999999999 9999999998876543

>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*

Probab=99.92  E-value=3.1e-24  Score=157.09  Aligned_cols=158  Identities=15%  Similarity=0.148  Sum_probs=110.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+........++   .+.++||||..          .+......
T Consensus        13 ~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~   82 (179)
T 2y8e_A           13 RKFKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQE----------RFRSLIPS   82 (179)
T ss_dssp             EEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECCSG----------GGGGGSHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEECCeEEEEEEEECCCcH----------HHHHHHHH
Confidence            358999999999999999999998765555555555444444444444   68999999942          22334456


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++..   +|++|+|+|++++.+..... .+..+.   ..++|+++|+||+|+.+.  +.+..++...+.....      +
T Consensus        83 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~------~  151 (179)
T 2y8e_A           83 YIRD---STVAVVVYDITNTNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK--RQVSTEEGERKAKELN------V  151 (179)
T ss_dssp             HHHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG--CCSCHHHHHHHHHHHT------C
T ss_pred             HhcC---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc--CcCCHHHHHHHHHHcC------C
Confidence            6666   89999999999865543321 111111   257999999999999764  2333444444444432      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+++.|+++++++|.+.+..
T Consensus       152 ~~~~~Sa~~~~~i~~l~~~l~~~~~~  177 (179)
T 2y8e_A          152 MFIETSAKAGYNVKQLFRRVAAALPG  177 (179)
T ss_dssp             EEEEEBTTTTBSHHHHHHHHHHTCC-
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHhh
Confidence            89999999999999999999886543

>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*

Probab=99.92  E-value=3.1e-24  Score=158.17  Aligned_cols=159  Identities=16%  Similarity=0.165  Sum_probs=109.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...++|+++|++|+|||||+++|++. ....+.++.+.+.... ...+..+.+|||||.          +.+...+..++
T Consensus        14 ~~~~ki~ivG~~~vGKSsL~~~l~~~-~~~~~~~t~g~~~~~~-~~~~~~l~i~Dt~G~----------~~~~~~~~~~~   81 (181)
T 1fzq_A           14 DQEVRILLLGLDNAGKTTLLKQLASE-DISHITPTQGFNIKSV-QSQGFKLNVWDIGGQ----------RKIRPYWRSYF   81 (181)
T ss_dssp             SSCEEEEEEESTTSSHHHHHHHHCCS-CCEEEEEETTEEEEEE-EETTEEEEEEECSSC----------GGGHHHHHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHhcC-CCCcccCcCCeEEEEE-EECCEEEEEEECCCC----------HHHHHHHHHHh
Confidence            44689999999999999999999997 4455556666433211 112447899999984          33466777888


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (219)
                      +.   +|++++|+|++++.+.....  +...+.   ..+.|+++|+||+|+....       ..++..+.+...  ....
T Consensus        82 ~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~~~~~~~~~~~~~~~  151 (181)
T 1fzq_A           82 EN---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-------PASEIAEGLNLHTIRDRV  151 (181)
T ss_dssp             TT---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred             CC---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhhcCCCEEEEEECcCcccCC-------CHHHHHHHhCchhccCCc
Confidence            77   89999999999876654321  112222   2579999999999997542       122333332211  1223


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      .+++++||++|.|++++++++.+.+...
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~~  179 (181)
T 1fzq_A          152 WQIQSCSALTGEGVQDGMNWVCKNVNAK  179 (181)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHTC---
T ss_pred             eEEEEccCCCCCCHHHHHHHHHHHHHhc
Confidence            5799999999999999999998876544

>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8

Probab=99.92  E-value=1.6e-23  Score=154.98  Aligned_cols=170  Identities=25%  Similarity=0.339  Sum_probs=120.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCC-CCCCCcchhhhHHHHHHHHhhc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYG-FAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~-~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      ++|+++|++|+|||||+++|++..+.  ....++++.....+..+ .+.++||||+. ...|+..+++.+..+...+++.
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~~~--~~~~~~~t~~~~~~~~~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~   78 (190)
T 2cxx_A            2 ATIIFAGRSNVGKSTLIYRLTGKKVR--RGKRPGVTRKIIEIEWK-NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIED   78 (190)
T ss_dssp             CEEEEEEBTTSSHHHHHHHHHSCCCS--SSSSTTCTTSCEEEEET-TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCcCCc--cCCCCCccceeEEEecC-CEEEEECCCccccccCCHHHHHHHHHHHHHHHHh
Confidence            68999999999999999999997533  33344555444444443 78999999964 3556777788899999888887


Q ss_pred             -cCCccEEEEEEeCCCCCC-----------cccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          119 -RESLVGVLLLIDASVPPQ-----------KIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       119 -~~~~d~vi~v~d~~~~~~-----------~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                       ...++++++|.|......           ..+......+...++|+++|+||+|+....     .+..+++.+.++..+
T Consensus        79 ~~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~  153 (190)
T 2cxx_A           79 NAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEVPL  153 (190)
T ss_dssp             HGGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTCCG
T ss_pred             hhccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCcH-----HHHHHHHHHHhhhhh
Confidence             677888888888764211           111223444555789999999999997642     234555555544200


Q ss_pred             C-CCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          187 P-HHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       187 ~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      . ...+++++||++|.|++++++++.+.+...
T Consensus       154 ~~~~~~~~~~Sa~~~~~v~~l~~~l~~~~~~~  185 (190)
T 2cxx_A          154 SEIDKVFIPISAKFGDNIERLKNRIFEVIRER  185 (190)
T ss_dssp             GGHHHHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hccCCcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence            0 012479999999999999999999876543

>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}

Probab=99.92  E-value=4.8e-24  Score=158.41  Aligned_cols=159  Identities=18%  Similarity=0.178  Sum_probs=112.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+|+|++|+|||||+++|++..+.....++.+.+........+   ..+.+|||||...          +..+..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~   92 (193)
T 2oil_A           23 NFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLER----------YRAITS   92 (193)
T ss_dssp             SEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCT----------TCTTHH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchh----------hhhhhH
Confidence            446899999999999999999999986555555666655544444433   3688999999642          123445


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+.   ..+.|+++|+||+|+....  .+..+....+....      .
T Consensus        93 ~~~~~---~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~------~  161 (193)
T 2oil_A           93 AYYRG---AVGALLVFDLTKHQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQAR--EVPTEEARMFAENN------G  161 (193)
T ss_dssp             HHHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGGC--CSCHHHHHHHHHHT------T
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCccccc--ccCHHHHHHHHHHc------C
Confidence            66666   89999999999866543321 122222   2578999999999997642  23334444444332      2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.+..
T Consensus       162 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  188 (193)
T 2oil_A          162 LLFLETSALDSTNVELAFETVLKEIFA  188 (193)
T ss_dssp             CEEEEECTTTCTTHHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999876543

>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.92  E-value=5.8e-24  Score=160.22  Aligned_cols=158  Identities=18%  Similarity=0.242  Sum_probs=111.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||..          .+.....
T Consensus        18 ~~~~~i~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~   87 (213)
T 3cph_A           18 DSIMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQLWDTAGQE----------RFRTITT   87 (213)
T ss_dssp             --CEEEEEECSTTSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEETTEEEEEEEECCTTGG----------GGTCCCH
T ss_pred             CcceEEEEECCCCCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEECCEEEEEEEEeCCCcH----------HHHHHHH
Confidence            4578999999999999999999998765555556666555544444444   68999999943          2223345


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .++..   +|++|+|+|++++.+..... .+..+.   ..+.|+++|+||+|+..   +....+..+++.+.++      
T Consensus        88 ~~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~------  155 (213)
T 3cph_A           88 AYYRG---AMGIILVYDVTDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMET---RVVTADQGEALAKELG------  155 (213)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCSS---CCSCHHHHHHHHHHHT------
T ss_pred             HHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc---cccCHHHHHHHHHHcC------
Confidence            56666   89999999999865543321 112222   24789999999999942   3334445555555443      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.+..
T Consensus       156 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~  182 (213)
T 3cph_A          156 IPFIESSAKNDDNVNEIFFTLAKLIQE  182 (213)
T ss_dssp             CCEEECBTTTTBSSHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999886654

>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*

Probab=99.92  E-value=9.8e-25  Score=159.85  Aligned_cols=164  Identities=17%  Similarity=0.170  Sum_probs=110.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...++|+++|++|+|||||+++|++..+.....+..+.+........ +..+.+|||||......          +...+
T Consensus         6 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~----------~~~~~   75 (178)
T 2lkc_A            6 ERPPVVTIMGHVDHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVNDKKITFLDTPGHEAFTT----------MRARG   75 (178)
T ss_dssp             CCCCEEEEESCTTTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEETTEEEEESCCCSSSSSSC----------SCCSS
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeCCceEEEEECCCCHHHHH----------HHHHH
Confidence            45789999999999999999999997544333222222222222223 34688999999643211          11122


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh---cCCCCCCe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE---NYPHHPPW  192 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  192 (219)
                         ...+|++|+|+|++++......+.+..+...++|+++|+||+|+....     .+......+....   .++..+++
T Consensus        76 ---~~~~d~~i~v~d~~~~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  147 (178)
T 2lkc_A           76 ---AQVTDIVILVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDKPEAN-----PDRVMQELMEYNLVPEEWGGDTIF  147 (178)
T ss_dssp             ---CCCCCEEEEEEETTCCCCHHHHHHHHHHGGGSCCEEEEEETTTSSCSC-----HHHHHHHHTTTTCCBTTTTSSEEE
T ss_pred             ---HhhCCEEEEEEECCCCCcHHHHHHHHHHHhCCCCEEEEEECccCCcCC-----HHHHHHHHHhcCcChhHcCCcccE
Confidence               334899999999998776666667777777789999999999997531     1122222211111   11112579


Q ss_pred             EEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          193 IMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                      +++||+++.|+++++++|.+.+...+
T Consensus       148 ~~~Sa~~~~gv~~l~~~l~~~~~~~~  173 (178)
T 2lkc_A          148 CKLSAKTKEGLDHLLEMILLVSEMEE  173 (178)
T ss_dssp             EECCSSSSHHHHHHHHHHHHHHHHTT
T ss_pred             EEEecCCCCCHHHHHHHHHHhhhhhc
Confidence            99999999999999999998876643

>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}

Probab=99.92  E-value=1.9e-24  Score=155.70  Aligned_cols=156  Identities=26%  Similarity=0.281  Sum_probs=104.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|++|+|||||+++|++.. .....+.++++.....  ... +..+.++||||......   ....+......++
T Consensus         2 ~ki~v~G~~~~GKSsli~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~---~~~~~~~~~~~~~   77 (161)
T 2dyk_A            2 HKVVIVGRPNVGKSSLFNRLLKKR-SAVVADVPGVTRDLKEGVVETDRGRFLLVDTGGLWSGDK---WEKKIQEKVDRAL   77 (161)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHCC-C-----------CCEEEEEEETTEEEEEEECGGGCSSSS---CCHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-eeeccCCCCceecceEEEEEeCCceEEEEECCCCCCccc---hHHHHHHHHHHHH
Confidence            589999999999999999999874 3334444554443322  222 34789999999753221   1222334445555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      +.   +|++++|+|++++.+..+..+..++...+.|+++|+||+|+....      +..+++. .    ++ ..+++++|
T Consensus        78 ~~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~------~~~~~~~-~----~~-~~~~~~~S  142 (161)
T 2dyk_A           78 ED---AEVVLFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKHE------LYLGPLY-G----LG-FGDPIPTS  142 (161)
T ss_dssp             TT---CSEEEEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGGG------GGCGGGG-G----GS-SCSCEECB
T ss_pred             Hh---CCEEEEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccch------HhHHHHH-h----CC-CCCeEEEe
Confidence            55   899999999999877766667777777889999999999997642      1222222 1    11 13799999


Q ss_pred             cCCCCChHHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~  214 (219)
                      |+++.|++++++++.+.+
T Consensus       143 a~~~~gv~~l~~~l~~~l  160 (161)
T 2dyk_A          143 SEHARGLEELLEAIWERL  160 (161)
T ss_dssp             TTTTBSHHHHHHHHHHHC
T ss_pred             cccCCChHHHHHHHHHhC
Confidence            999999999999998753

>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}

Probab=99.91  E-value=4.1e-24  Score=161.60  Aligned_cols=162  Identities=12%  Similarity=0.100  Sum_probs=97.2

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ....++|+++|.+|+|||||+++|++..+...+.++.+.... .....++   .+.+|||||..          .|..+.
T Consensus        31 ~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~l~l~Dt~G~~----------~~~~~~   99 (214)
T 2j1l_A           31 GVRSVKVVLVGDGGCGKTSLLMVFADGAFPESYTPTVFERYM-VNLQVKGKPVHLHIWDTAGQD----------DYDRLR   99 (214)
T ss_dssp             -CCEEEEEEEECTTSSHHHHHHHHHC-------CCCCCEEEE-EEEEETTEEEEEEEEEC--------------------
T ss_pred             CcceEEEEEECcCCCCHHHHHHHHHcCCCCCCCCCccceeEE-EEEEECCEEEEEEEEECCCch----------hhhHHH
Confidence            345689999999999999999999987654444454443332 2223333   68899999942          334556


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHH
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSF  178 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~  178 (219)
                      ..++..   +|++|+|+|++++.+.....  ....+..  .++|+++|+||+|+.....          +.+..++..++
T Consensus       100 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  176 (214)
T 2j1l_A          100 PLFYPD---ASVLLLCFDVTSPNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEM  176 (214)
T ss_dssp             -----C---EEEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHH
T ss_pred             HHHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHH
Confidence            666766   89999999999866554321  1222222  4789999999999976421          12233333444


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+.++     ..+++++||++|.|+++++++|.+.+..
T Consensus       177 ~~~~~-----~~~~~~~SA~~g~gi~el~~~l~~~~~~  209 (214)
T 2j1l_A          177 ARSVG-----AVAYLECSARLHDNVHAVFQEAAEVALS  209 (214)
T ss_dssp             HHHTT-----CSEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HHhcC-----CCEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence            33322     1389999999999999999999887654

>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}

Probab=99.91  E-value=6.7e-25  Score=164.27  Aligned_cols=164  Identities=15%  Similarity=0.102  Sum_probs=109.7

Q ss_pred             CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhH
Q 027757           32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDW  108 (219)
Q Consensus        32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~  108 (219)
                      +.++....++|+++|.+|+|||||+++|++..+...+.++.+... ......   ...+.+|||||.....         
T Consensus        17 q~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~~~~~~~~l~Dt~G~~~~~---------   86 (201)
T 3oes_A           17 QGMPLVRYRKVVILGYRCVGKTSLAHQFVEGEFSEGYDPTVENTY-SKIVTLGKDEFHLHLVDTAGQDEYS---------   86 (201)
T ss_dssp             ------CEEEEEEEESTTSSHHHHHHHHHHSCCCSCCCCCSEEEE-EEEEC----CEEEEEEEECCCCTTC---------
T ss_pred             CCCCCCCcEEEEEECCCCcCHHHHHHHHHhCCCCCCCCCccceEE-EEEEEECCEEEEEEEEECCCccchH---------
Confidence            345556678999999999999999999999865554555444333 222222   2367899999954221         


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                       .+...+++.   +|++|+|+|++++.+..... ....+.    ..++|+++|+||+|+...  ..+.......+.+.++
T Consensus        87 -~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~  160 (201)
T 3oes_A           87 -ILPYSFIIG---VHGYVLVYSVTSLHSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE--REVQAVEGKKLAESWG  160 (201)
T ss_dssp             -CCCGGGTTT---CCEEEEEEETTCHHHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT
T ss_pred             -HHHHHHHhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc--cccCHHHHHHHHHHhC
Confidence             122445555   89999999999866554321 112222    247899999999999764  3344455555555544


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                            .+++++||+++.|+++++++|.+.+...
T Consensus       161 ------~~~~~~Sa~~~~~v~~l~~~l~~~i~~~  188 (201)
T 3oes_A          161 ------ATFMESSARENQLTQGIFTKVIQEIARV  188 (201)
T ss_dssp             ------CEEEECCTTCHHHHHHHHHHHHHHHHHC
T ss_pred             ------CeEEEEeCCCCCCHHHHHHHHHHHHHhh
Confidence                  5899999999999999999998876543

>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*

Probab=99.91  E-value=3.9e-24  Score=158.43  Aligned_cols=161  Identities=15%  Similarity=0.085  Sum_probs=110.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...++|+++|.+|+|||||+++|++..+.....++.+.+... ....+..+.+|||||.          ..+..++..++
T Consensus        20 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~l~Dt~G~----------~~~~~~~~~~~   88 (188)
T 1zd9_A           20 KEEMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMRK-ITKGNVTIKLWDIGGQ----------PRFRSMWERYC   88 (188)
T ss_dssp             CEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEE-EEETTEEEEEEEECCS----------HHHHTTHHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHHcCCCCCccCCCCceeEEE-EEeCCEEEEEEECCCC----------HhHHHHHHHHH
Confidence            346899999999999999999999876555555655544332 1122347899999994          23455667777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (219)
                      +.   +|++|+|+|++++.+.....  +...+.   ..++|+++|+||+|+....       ..+++.+.+...  ....
T Consensus        89 ~~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~~~~~~~~~~~~~~~  158 (188)
T 1zd9_A           89 RG---VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-------DEKELIEKMNLSAIQDRE  158 (188)
T ss_dssp             TT---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred             cc---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccCC-------CHHHHHHHhChhhhccCC
Confidence            66   89999999999876554321  112222   2689999999999997531       122333332221  1223


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                      .+++++||+++.|+++++++|.+.+...+
T Consensus       159 ~~~~~~SA~~g~gv~~l~~~l~~~~~~~~  187 (188)
T 1zd9_A          159 ICCYSISCKEKDNIDITLQWLIQHSKSRR  187 (188)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHTCC---
T ss_pred             eeEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence            57899999999999999999998776554

>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}

Probab=99.91  E-value=2.1e-24  Score=160.07  Aligned_cols=160  Identities=20%  Similarity=0.258  Sum_probs=105.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-ccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-ELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ...++|+++|.+|+|||||+++|++.. +...+.++.+..  ...... +..+.+|||||...          +..++..
T Consensus        19 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~t~~~~--~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~   86 (190)
T 2h57_A           19 SKEVHVLCLGLDNSGKTTIINKLKPSNAQSQNILPTIGFS--IEKFKSSSLSFTVFDMSGQGR----------YRNLWEH   86 (190)
T ss_dssp             --CEEEEEEECTTSSHHHHHHHTSCGGGCCSSCCCCSSEE--EEEEECSSCEEEEEEECCSTT----------TGGGGGG
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCCCCCcCCcccee--EEEEEECCEEEEEEECCCCHH----------HHHHHHH
Confidence            456899999999999999999999975 244444444422  222222 45899999999532          2233455


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH-hcC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR-ENY  186 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~-~~~  186 (219)
                      +++.   +|++|+|+|++++.+....  .+...+..     .+.|+++|+||+|+....       ..++..+.+. ..+
T Consensus        87 ~~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~  156 (190)
T 2h57_A           87 YYKE---GQAIIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRDAV-------TSVKVSQLLCLENI  156 (190)
T ss_dssp             GGGG---CSEEEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTTCC-------CHHHHHHHHTGGGC
T ss_pred             HHhc---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCcccCC-------CHHHHHHHhChhhc
Confidence            6666   8999999999986544332  11122222     479999999999997531       1223333332 111


Q ss_pred             -CCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          187 -PHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       187 -~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                       ....+++++||+++.|+++++++|.+.+++++
T Consensus       157 ~~~~~~~~~~Sa~~~~gi~~l~~~l~~~i~~~k  189 (190)
T 2h57_A          157 KDKPWHICASDAIKGEGLQEGVDWLQDQIQTVK  189 (190)
T ss_dssp             CSSCEEEEECBTTTTBTHHHHHHHHHHHC----
T ss_pred             cCCceEEEEccCCCCcCHHHHHHHHHHHHHHhc
Confidence             23468999999999999999999999887765

>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.4e-24  Score=161.42  Aligned_cols=159  Identities=13%  Similarity=0.024  Sum_probs=109.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec---CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN---KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~---~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..... ....+   ..+.+|||||....          ..+..
T Consensus        16 ~~~~ki~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~D~~G~~~~----------~~~~~   84 (194)
T 2atx_A           16 ALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAV-SVTVGGKQYLLGLYDTAGQEDY----------DRLRP   84 (194)
T ss_dssp             EEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEE-EEESSSCEEEEEEECCCCSSSS----------TTTGG
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCcccceeEE-EEEECCEEEEEEEEECCCCcch----------hHHHH
Confidence            456899999999999999999999876555445554433322 22223   26789999996422          22334


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQ  179 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~  179 (219)
                      .+++.   +|++|+|+|++++.+.....  .+..+..  .++|+++|+||+|+.+..          .+.+..++..++.
T Consensus        85 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  161 (194)
T 2atx_A           85 LSYPM---TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA  161 (194)
T ss_dssp             GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred             HhcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHH
Confidence            55555   89999999999876554331  2233332  389999999999997642          1234445555555


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.++.     .+++++||++|.|+++++++|.+.+
T Consensus       162 ~~~~~-----~~~~~~Sa~~g~gi~~l~~~l~~~i  191 (194)
T 2atx_A          162 KEIGA-----CCYVECSALTQKGLKTVFDEAIIAI  191 (194)
T ss_dssp             HHHTC-----SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcCC-----cEEEEeeCCCCCCHHHHHHHHHHHH
Confidence            55431     3899999999999999999998765

>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=9.2e-24  Score=156.85  Aligned_cols=156  Identities=22%  Similarity=0.194  Sum_probs=112.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+.+.....+..+.   .+.+|||||..          .+..+...+
T Consensus        15 ~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~   84 (195)
T 1x3s_A           15 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE----------RFRTLTPSY   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG----------GGCCSHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEECCeEEEEEEEeCCCch----------hhhhhhHHH
Confidence            57999999999999999999999866666677777666555554443   68999999953          223344566


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++|+|+|++++.+..... .+..+..    .++|+++|+||+|+..   +.+..+...++.+...      +
T Consensus        85 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~------~  152 (195)
T 1x3s_A           85 YRG---AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS------M  152 (195)
T ss_dssp             HTT---CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT------C
T ss_pred             hcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc---cccCHHHHHHHHHHcC------C
Confidence            666   89999999999876554432 1222222    4789999999999953   2233344444444322      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||+++.|+++++++|.+.+..
T Consensus       153 ~~~~~Sa~~~~gi~~l~~~l~~~~~~  178 (195)
T 1x3s_A          153 LFIEASAKTCDGVQCAFEELVEKIIQ  178 (195)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEEecCCCCCCHHHHHHHHHHHHHh
Confidence            79999999999999999999887653

>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}

Probab=99.91  E-value=1.1e-23  Score=157.15  Aligned_cols=161  Identities=16%  Similarity=0.118  Sum_probs=106.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ....++|+++|++|+|||||+++|++........+..+.+.....+..++   .+.+|||+|....         ...+.
T Consensus        20 ~~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~---------~~~~~   90 (195)
T 3cbq_A           20 KDGIFKVMLVGESGVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEVTLVVYDIWEQGDA---------GGWLR   90 (195)
T ss_dssp             --CEEEEEEECSTTSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEETTEEEEEEEECCCCCSGG---------GHHHH
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHHhccCCccCCCCcccceEEEEEEECCEEEEEEEEecCCCccc---------hhhhH
Confidence            34568999999999999999999986532222222222222222233333   5778999995311         12356


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ..+++.   +|++|+|+|++++.+..... .+..+.    ..++|+++|+||+|+...  +.+..++.+++.+.+.    
T Consensus        91 ~~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~a~~~~----  161 (195)
T 3cbq_A           91 DHCLQT---GDAFLIVFSVTDRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS--REVSLEEGRHLAGTLS----  161 (195)
T ss_dssp             HHHHHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTTT--CCSCHHHHHHHHHHTT----
T ss_pred             HHhhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhcccc--CCcCHHHHHHHHHHhC----
Confidence            677777   89999999999876554431 111121    147999999999999754  2333444444444322    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                        ++++++||+++.|++++|+++.+.+..
T Consensus       162 --~~~~e~Sa~~~~~v~~lf~~l~~~i~~  188 (195)
T 3cbq_A          162 --CKHIETSAALHHNTRELFEGAVRQIRL  188 (195)
T ss_dssp             --CEEEEEBTTTTBSHHHHHHHHHHHHHT
T ss_pred             --CEEEEEcCCCCCCHHHHHHHHHHHHHH
Confidence              589999999999999999999887654

>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*

Probab=99.91  E-value=1.2e-23  Score=152.88  Aligned_cols=156  Identities=17%  Similarity=0.146  Sum_probs=107.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ..++|+++|++|+|||||+++|++..+ ....++.+.+.  ..... +..+.+|||||..          .+..++..++
T Consensus         6 ~~~~i~v~G~~~~GKssl~~~l~~~~~-~~~~~t~~~~~--~~~~~~~~~~~~~Dt~G~~----------~~~~~~~~~~   72 (171)
T 1upt_A            6 REMRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNV--ETVTYKNLKFQVWDLGGLT----------SIRPYWRCYY   72 (171)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHSSC-CCCCCCSSEEE--EEEEETTEEEEEEEECCCG----------GGGGGGGGGC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCCC-CCcCCcCccce--EEEEECCEEEEEEECCCCh----------hhhHHHHHHh
Confidence            368999999999999999999998743 33444444332  22222 4478999999953          1233445555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (219)
                      +.   +|++++|+|++++.+.....  +...+..   .+.|+++|+||+|+.+..       ..+++.+.+...  ....
T Consensus        73 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~  142 (171)
T 1upt_A           73 SN---TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-------TSSEMANSLGLPALKDRK  142 (171)
T ss_dssp             TT---CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTGGGCTTSC
T ss_pred             cc---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCCC-------CHHHHHHHhCchhccCCc
Confidence            55   89999999999987654421  2222222   589999999999997642       123333333221  1223


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+++++||+++.|+++++++|.+.+..
T Consensus       143 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  169 (171)
T 1upt_A          143 WQIFKTSATKGTGLDEAMEWLVETLKS  169 (171)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             eEEEECcCCCCcCHHHHHHHHHHHHhh
Confidence            579999999999999999999987754

>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*

Probab=99.91  E-value=2.1e-23  Score=154.52  Aligned_cols=157  Identities=17%  Similarity=0.269  Sum_probs=104.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|.+|+|||||+++|++..+.....++.+.... .....++   .+.+|||||..          .+..+...
T Consensus        20 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~   88 (190)
T 3con_A           20 TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYR-KQVVIDGETCLLDILDTAGQE----------EYSAMRDQ   88 (190)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCC--------------------
T ss_pred             ceeEEEEECcCCCCHHHHHHHHHcCCCccccCCccceEEE-EEEEECCEEEEEEEEECCChH----------HHHHHHHH
Confidence            3579999999999999999999987554444444433322 2233333   48899999943          23445566


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++.   +|++++|+|++++.+..+.. ....+.    ..++|+++|+||+|+..   +....++.+++.+.++      
T Consensus        89 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~---~~~~~~~~~~~~~~~~------  156 (190)
T 3con_A           89 YMRT---GEGFLCVFAINNSKSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT---RTVDTKQAHELAKSYG------  156 (190)
T ss_dssp             -CTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT------
T ss_pred             hhCc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc---ccCCHHHHHHHHHHcC------
Confidence            6666   89999999999866544321 111111    24799999999999875   2234455556655543      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++++||+++.|+++++++|.+.+...
T Consensus       157 ~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  184 (190)
T 3con_A          157 IPFIETSAKTRQGVEDAFYTLVREIRQY  184 (190)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             CeEEEEeCCCCCCHHHHHHHHHHHHHHH
Confidence            5899999999999999999998877654

>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=1.3e-23  Score=156.63  Aligned_cols=157  Identities=17%  Similarity=0.205  Sum_probs=110.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+.+... ....+.   .+.+|||||..          .+..+..
T Consensus         6 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~   74 (199)
T 2gf0_A            6 SNDYRVVVFGAGGVGKSSLVLRFVKGTFRDTYIPTIEDTYRQ-VISCDKSVCTLQITDTTGSH----------QFPAMQR   74 (199)
T ss_dssp             CCCEEEEEEECTTSSHHHHHHHHHHSCCCCTTSCCCCEEEEE-EEEETTEEEEEEEEECCGGG----------SCHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHcCCCCCcccCccccceeE-EEEECCEEEEEEEEeCCChH----------HhHHHHH
Confidence            456899999999999999999999876554455554433322 222222   68899999942          3456677


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .++..   +|++++|+|++++.+..... ...++..     .+.|+++|+||+|+...   .+..+....+.+.++    
T Consensus        75 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~----  144 (199)
T 2gf0_A           75 LSISK---GHAFILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQR---EVDTREAQAVAQEWK----  144 (199)
T ss_dssp             HHHHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSSC---SSCHHHHHHHHHHHT----
T ss_pred             Hhhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCcc---ccCHHHHHHHHHHhC----
Confidence            77777   89999999999865543322 2222222     47899999999999752   233444455544433    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                        .+++++||++|.|+++++++|.+.+..
T Consensus       145 --~~~~~~Sa~~~~gi~~l~~~l~~~~~~  171 (199)
T 2gf0_A          145 --CAFMETSAKMNYNVKELFQELLTLETR  171 (199)
T ss_dssp             --CEEEECBTTTTBSHHHHHHHHHHHCSS
T ss_pred             --CeEEEEecCCCCCHHHHHHHHHHHHhh
Confidence              589999999999999999999887643

>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}

Probab=99.91  E-value=5.7e-24  Score=159.13  Aligned_cols=158  Identities=21%  Similarity=0.171  Sum_probs=104.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||.          ..+..+..
T Consensus        23 ~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~----------~~~~~~~~   92 (200)
T 2o52_A           23 DFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQ----------ERFRSVTR   92 (200)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTH----------HHHSCCCH
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCc----------HhHHHHHH
Confidence            3468999999999999999999998765555555555444444444443   7899999993          22333445


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+   ...+.|+++|+||+|+...  +.+...+...+.+..      .
T Consensus        93 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~------~  161 (200)
T 2o52_A           93 SYYRG---AAGALLVYDITSRETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE--REVTFLEASRFAQEN------E  161 (200)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHT------T
T ss_pred             HHhcc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc--cccCHHHHHHHHHHc------C
Confidence            66666   89999999999876554432 11112   2257999999999999754  223334444444332      2


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++++||++|.|+++++++|.+.+.
T Consensus       162 ~~~~~~SA~~g~gi~~l~~~l~~~i~  187 (200)
T 2o52_A          162 LMFLETSALTGENVEEAFLKCARTIL  187 (200)
T ss_dssp             CEEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            68999999999999999999987654

>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...

Probab=99.91  E-value=2.5e-23  Score=150.10  Aligned_cols=154  Identities=16%  Similarity=0.230  Sum_probs=107.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+.... .....++   .+.++||||...          +..+...+
T Consensus         3 ~~~i~v~G~~~~GKssl~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~D~~G~~~----------~~~~~~~~   71 (166)
T 2ce2_X            3 EYKLVVVGAGGVGKSALTIQLIQNHFVDECDPTIEDSYR-KQVVIDGETCLLDILDTAGQEE----------YSAMRDQY   71 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCSCCCTTCCEEEE-EEEEETTEEEEEEEEECCCCSS----------CCHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCcCccccCCccceEEE-EEEEECCEEEEEEEEECCCchh----------hhHHHHHh
Confidence            468999999999999999999987544444444443322 2223332   478999999532          23455667


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-HHHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +..   +|++++|+|++++.+.... .....+.    ..+.|+++|+||+|+.+.   ....+..+++.+..+      .
T Consensus        72 ~~~---~~~~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~~---~~~~~~~~~~~~~~~------~  139 (166)
T 2ce2_X           72 MRT---GEGFLCVFAINNTKSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAAR---TVESRQAQDLARSYG------I  139 (166)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSCC---CSCHHHHHHHHHHHT------C
T ss_pred             hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhhc---ccCHHHHHHHHHHcC------C
Confidence            776   8999999999976554332 1111111    247999999999998762   233455555555543      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||+++.|+++++++|.+.+.
T Consensus       140 ~~~~~Sa~~~~gi~~l~~~l~~~~~  164 (166)
T 2ce2_X          140 PYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CEEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             eEEEecCCCCCCHHHHHHHHHHHHH
Confidence            8999999999999999999988764

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.91  E-value=1.2e-23  Score=175.93  Aligned_cols=172  Identities=22%  Similarity=0.291  Sum_probs=123.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+|+|++. ......+.++++.+..  .+.. +..+.+|||||+.........++.|..+..
T Consensus       193 ~~~~ki~ivG~~~vGKSslin~l~~~-~~~~~~~~~gtt~~~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  271 (456)
T 4dcu_A          193 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  271 (456)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEECC------CTTSEEEEETTEEEEETTGGGTTTBTTBCCCCSHHHHHHH
T ss_pred             cccceeEEecCCCCCHHHHHHHHhCC-CccccCCCCCeEEEEEEEEEEECCceEEEEECCCCCcCcccchHHHHHHHHHH
Confidence            45789999999999999999999986 4456677777777542  2222 347999999997644333445666666655


Q ss_pred             H-HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCC
Q 027757          114 G-YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHP  190 (219)
Q Consensus       114 ~-~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  190 (219)
                      . +++.   +|++|+|+|++++.+..+..+..++...++|+++|+||+|+.+...  .   ..++..+.+...+.  ...
T Consensus       272 ~~~~~~---ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~~~--~---~~~~~~~~~~~~~~~~~~~  343 (456)
T 4dcu_A          272 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE--S---TMKEFEENIRDHFQFLDYA  343 (456)
T ss_dssp             HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCS--S---HHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHhh---CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCCch--H---HHHHHHHHHHHhcccCCCC
Confidence            3 5566   8999999999998888888888888888999999999999976421  2   22333333333221  236


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++++||++|.|++++++++.+.+..+
T Consensus       344 ~~~~~SA~~g~gv~~l~~~i~~~~~~~  370 (456)
T 4dcu_A          344 PILFMSALTKKRIHTLMPAIIKASENH  370 (456)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CEEEEcCCCCcCHHHHHHHHHHHHHHh
Confidence            899999999999999999999877654

>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*

Probab=99.91  E-value=1.7e-24  Score=159.35  Aligned_cols=156  Identities=15%  Similarity=0.215  Sum_probs=87.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||..          .|..+...
T Consensus         7 ~~~ki~v~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~----------~~~~~~~~   76 (183)
T 2fu5_C            7 YLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQE----------RFRTITTA   76 (183)
T ss_dssp             EEEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEECCEEEEEEEEcCCCCh----------hhhhhHHH
Confidence            358999999999999999999998754444444444333333343333   68999999953          22334445


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +++.   +|++|+|+|++++.+....  ..|+.      ..+.|+++|+||+|+.+.  +.+..++.+++.+..+     
T Consensus        77 ~~~~---~d~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~-----  144 (183)
T 2fu5_C           77 YYRG---AMGIMLVYDITNEKSFDNI--RNWIRNIEEHASADVEKMILGNKCDVNDK--RQVSKERGEKLALDYG-----  144 (183)
T ss_dssp             TTTT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHSCTTCEEEEEEEC--CCSC--CCSCHHHHHHHHHHHT-----
T ss_pred             HHhc---CCEEEEEEECcCHHHHHHH--HHHHHHHHHhcCCCCCEEEEEECccCCcc--CcCCHHHHHHHHHHcC-----
Confidence            5555   8999999999986654332  22332      257899999999999754  2334455555555443     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       ++++++||+++.|+++++++|.+.+..
T Consensus       145 -~~~~~~Sa~~~~~i~~l~~~l~~~i~~  171 (183)
T 2fu5_C          145 -IKFMETSAKANINVENAFFTLARDIKA  171 (183)
T ss_dssp             -CEEEECCC---CCHHHHHHHHHHHHHH
T ss_pred             -CeEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence             589999999999999999999876643

>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}

Probab=99.91  E-value=4.2e-24  Score=159.75  Aligned_cols=162  Identities=15%  Similarity=0.106  Sum_probs=105.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ....++|+++|.+|+|||||+++|++..+...+.++.+.... .....++   .+.+|||||....          ..++
T Consensus        17 ~~~~~ki~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~-~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~   85 (201)
T 2q3h_A           17 EGRGVKCVLVGDGAVGKTSLVVSYTTNGYPTEYIPTAFDNFS-AVVSVDGRPVRLQLCDTAGQDEF----------DKLR   85 (201)
T ss_dssp             ---CEEEEEECSTTSSHHHHHHHHHC--------CCSSEEEE-EEEEETTEEEEEEEEECCCSTTC----------SSSG
T ss_pred             CCcceEEEEECCCCCCHHHHHHHHHhCCCCCCCCCcccceeE-EEEEECCEEEEEEEEECCCCHHH----------HHHh
Confidence            355789999999999999999999987655555555443332 2233333   5779999996422          1223


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHH
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSF  178 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~  178 (219)
                      ..++..   +|++|+|+|++++.+.....  ....+..  .++|+++|+||+|+....          .+.+..++...+
T Consensus        86 ~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~  162 (201)
T 2q3h_A           86 PLCYTN---TDIFLLCFSVVSPSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLL  162 (201)
T ss_dssp             GGGGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHH
T ss_pred             HhhcCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHH
Confidence            445555   89999999999876654431  2222222  489999999999997632          233444555555


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+.++.     .+++++||+++.|+++++++|.+.+..
T Consensus       163 ~~~~~~-----~~~~~~Sa~~g~gi~~l~~~l~~~~~~  195 (201)
T 2q3h_A          163 AEEIKA-----ASYIECSALTQKNLKEVFDAAIVAGIQ  195 (201)
T ss_dssp             HHHHTC-----SEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             HHhcCC-----cEEEEEecCCCCCHHHHHHHHHHHHhc
Confidence            554431     379999999999999999999886543

>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.1e-24  Score=163.20  Aligned_cols=159  Identities=19%  Similarity=0.208  Sum_probs=105.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+|+|++|+|||||+++|++..+.....++.+.+.....+..++   .+.+|||||....          ..++.
T Consensus        11 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   80 (223)
T 3cpj_B           11 DLLFKIVLIGDSGVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIEGKRIKAQIWDTAGQERY----------RAITS   80 (223)
T ss_dssp             CEEEEEEEESCTTSSHHHHHHHHHHCCCCC------CCSEEEEEEEETTEEEEEEEECCTTTTTT----------TCCCG
T ss_pred             CeeeEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCccch----------hhhHH
Confidence            3468999999999999999999999865555556655555544444444   6899999995421          22334


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+.   ..++|+++|+||+|+...  +++..++..++.+...      
T Consensus        81 ~~~~~---~d~vilV~D~~~~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~------  149 (223)
T 3cpj_B           81 AYYRG---AVGALIVYDISKSSSYENCNHWLSELRENADDNVAVGLIGNKSDLAHL--RAVPTEESKTFAQENQ------  149 (223)
T ss_dssp             GGTTT---CCEEEEEEC-CCHHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGGG--CCSCHHHHHHHHHHTT------
T ss_pred             HHhcc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc--cccCHHHHHHHHHHcC------
Confidence            55555   89999999999876654321 111222   247899999999999764  2333444444443322      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.+..
T Consensus       150 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  176 (223)
T 3cpj_B          150 LLFTETSALNSENVDKAFEELINTIYQ  176 (223)
T ss_dssp             CEEEECCCC-CCCHHHHHHHHHHHHTT
T ss_pred             CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            589999999999999999999887654

>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1

Probab=99.91  E-value=1.6e-23  Score=165.94  Aligned_cols=160  Identities=24%  Similarity=0.209  Sum_probs=113.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..+|+|+|.+|+|||||+|+|++.. ....++.+++|++..  .... +.++.++||||+....  ......+......+
T Consensus         7 ~g~V~ivG~~nvGKSTLln~l~g~~-~~ivs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~--~~l~~~~~~~~~~~   83 (301)
T 1wf3_A            7 SGFVAIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPM--DALGEFMDQEVYEA   83 (301)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTSC-CSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCC--SHHHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCc-eeeecCCCCceeEEEEEEEEeCCcEEEEecCccccchh--hHHHHHHHHHHHHH
Confidence            3579999999999999999999974 555566666665432  1222 3479999999976432  12222344445556


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccC--CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN--NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI  193 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~--~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (219)
                      ++.   +|++++|+|++++.+..+..+...+...  +.|+++|+||+|+....      ..+.+..+.+    ....+++
T Consensus        84 l~~---ad~il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~~------~~~~~~~~~~----~~~~~~~  150 (301)
T 1wf3_A           84 LAD---VNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP------EEAMKAYHEL----LPEAEPR  150 (301)
T ss_dssp             TSS---CSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH------HHHHHHHHHT----STTSEEE
T ss_pred             Hhc---CCEEEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCch------HHHHHHHHHh----cCcCcEE
Confidence            655   9999999999988776665556666665  89999999999997542      1123333332    2224689


Q ss_pred             EeecCCCCChHHHHHHHHHHH
Q 027757          194 MTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++||++|.|+++++++|.+.+
T Consensus       151 ~iSA~~g~gv~~l~~~l~~~l  171 (301)
T 1wf3_A          151 MLSALDERQVAELKADLLALM  171 (301)
T ss_dssp             ECCTTCHHHHHHHHHHHHTTC
T ss_pred             EEeCCCCCCHHHHHHHHHHhc
Confidence            999999999999999997643

>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*

Probab=99.91  E-value=1.2e-23  Score=155.33  Aligned_cols=158  Identities=17%  Similarity=0.124  Sum_probs=108.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...++|+++|++|+|||||+++|++.. ...+.++.+.+.... ...+..+.+|||||..          .+...+..++
T Consensus        16 ~~~~~i~v~G~~~~GKssl~~~l~~~~-~~~~~~t~~~~~~~~-~~~~~~~~~~Dt~G~~----------~~~~~~~~~~   83 (186)
T 1ksh_A           16 ERELRLLMLGLDNAGKTTILKKFNGED-VDTISPTLGFNIKTL-EHRGFKLNIWDVGGQK----------SLRSYWRNYF   83 (186)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHTTCC-CSSCCCCSSEEEEEE-EETTEEEEEEEECCSH----------HHHTTGGGGC
T ss_pred             CCeeEEEEECCCCCCHHHHHHHHhcCC-CCcccccCccceEEE-EECCEEEEEEECCCCH----------hHHHHHHHHh
Confidence            457899999999999999999999975 555555555333211 1124478999999952          2344445555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccH-HHH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDL-DCA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~-~~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (219)
                      +.   +|++++|+|++++.+.... ..+ ..+.   ..+.|+++|+||+|+....       ..++..+.+...  ....
T Consensus        84 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~  153 (186)
T 1ksh_A           84 ES---TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-------SCNAIQEALELDSIRSHH  153 (186)
T ss_dssp             TT---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred             cC---CCEEEEEEECcCHHHHHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCCC-------CHHHHHHHhChhhccCCc
Confidence            55   8999999999987665432 111 2222   2579999999999997642       123333332211  1234


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|++++++++.+.+.+
T Consensus       154 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~  180 (186)
T 1ksh_A          154 WRIQGCSAVTGEDLLPGIDWLLDDISS  180 (186)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             eEEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence            689999999999999999999887654

>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}

Probab=99.91  E-value=1.1e-24  Score=164.89  Aligned_cols=160  Identities=15%  Similarity=0.181  Sum_probs=110.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ...+||+++|.+|+|||||+|+|++..+.....++.+.+.........    ..+.+|||||....          ..+.
T Consensus         9 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~----------~~~~   78 (218)
T 4djt_A            9 ELTYKICLIGDGGVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDDQGNVIKFNVWDTAGQEKK----------AVLK   78 (218)
T ss_dssp             -CEEEEEEECCTTSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBTTSCEEEEEEEEECSGGGT----------SCCC
T ss_pred             cCccEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeCCCcEEEEEEEecCCchhh----------chHH
Confidence            446899999999999999999999876666667777766554444332    25899999995321          2233


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ..++..   +|++|+|+|++++.+..+..    .+......+.|+++|+||+|+....  .+..+....+    ...  .
T Consensus        79 ~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~----~~~--~  147 (218)
T 4djt_A           79 DVYYIG---ASGAILFFDVTSRITCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNRQ--KISKKLVMEV----LKG--K  147 (218)
T ss_dssp             HHHHTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC------CCHHHHHHH----TTT--C
T ss_pred             HHHhhc---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcccc--ccCHHHHHHH----HHH--c
Confidence            455655   89999999999876655431    1222223568999999999987542  2222222222    222  2


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ..+++++||++|.|+++++++|.+.+...
T Consensus       148 ~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  176 (218)
T 4djt_A          148 NYEYFEISAKTAHNFGLPFLHLARIFTGR  176 (218)
T ss_dssp             CCEEEEEBTTTTBTTTHHHHHHHHHHHCC
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHHHhcc
Confidence            36899999999999999999999877643

>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}

Probab=99.91  E-value=1.3e-23  Score=162.99  Aligned_cols=160  Identities=19%  Similarity=0.164  Sum_probs=111.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+++|++|+|||||+|+|++..  ....+.+++|.+  ...+..+ ..+.++||||..............+.+...|+
T Consensus         2 ~kI~lvG~~n~GKSTL~n~L~g~~--~~v~~~pg~Tv~~~~~~~~~~~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~   79 (256)
T 3iby_A            2 THALLIGNPNCGKTTLFNALTNAN--QRVGNWPGVTVEKKTGEFLLGEHLIEITDLPGVYSLVANAEGISQDEQIAAQSV   79 (256)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTTS--EEEEECTTSSSEEEEEEEEETTEEEEEEECCCCSSCC------CHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CCccCCCCceEEEEEEEEEECCeEEEEEeCCCcccccccccCCCHHHHHHHHHH
Confidence            689999999999999999999974  445555666643  3333333 37899999997533211000022234556666


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      .. ..+|++|+|+|+++..  ....+..++.+.++|+++|+||+|+.......   ...+.+.+.++      ++++++|
T Consensus        80 ~~-~~~d~vi~VvDas~~~--~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~---~~~~~l~~~lg------~~vi~~S  147 (256)
T 3iby_A           80 ID-LEYDCIINVIDACHLE--RHLYLTSQLFELGKPVVVALNMMDIAEHRGIS---IDTEKLESLLG------CSVIPIQ  147 (256)
T ss_dssp             HH-SCCSEEEEEEEGGGHH--HHHHHHHHHTTSCSCEEEEEECHHHHHHTTCE---ECHHHHHHHHC------SCEEECB
T ss_pred             hh-CCCCEEEEEeeCCCch--hHHHHHHHHHHcCCCEEEEEEChhcCCcCCcH---HHHHHHHHHcC------CCEEEEE
Confidence            22 2389999999999843  33556778888899999999999987654322   23444444443      6999999


Q ss_pred             cCCCCChHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQL  213 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~  213 (219)
                      |++|.|++++++++.+.
T Consensus       148 A~~g~gi~el~~~i~~~  164 (256)
T 3iby_A          148 AHKNIGIPALQQSLLHC  164 (256)
T ss_dssp             GGGTBSHHHHHHHHHTC
T ss_pred             CCCCCCHHHHHHHHHhh
Confidence            99999999999999765

>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*

Probab=99.91  E-value=3.7e-23  Score=150.11  Aligned_cols=159  Identities=23%  Similarity=0.263  Sum_probs=104.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.  ....++++..  ...+.. +..+.+|||||........    ..+.+...|
T Consensus         3 ~~~v~lvG~~gvGKStL~~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~----~~~~~~~~~   76 (165)
T 2wji_A            3 SYEIALIGNPNVGKSTIFNALTGENVY--IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTANS----IDEIIARDY   76 (165)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHCCSSS--CC-----CCCCCEEEEEETTEEEEEEECCCCSCSSSSS----HHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCCee--ccCCCCcceeeeEEEEEECCcEEEEEECCCcccCCCcc----hhHHHHHHH
Confidence            468999999999999999999986432  2333333332  222222 3478999999965321111    223455666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      ++.. .+|++++|+|+++...  .......+.+.+.|+++|+||+|+.......   ...+++.+.++      .+++++
T Consensus        77 ~~~~-~~~~~i~v~D~~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~---~~~~~~~~~~~------~~~~~~  144 (165)
T 2wji_A           77 IINE-KPDLVVNIVDATALER--NLYLTLQLMEMGANLLLALNKMDLAKSLGIE---IDVDKLEKILG------VKVVPL  144 (165)
T ss_dssp             HHHH-CCSEEEEEEETTCHHH--HHHHHHHHHHTTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT------SCEEEC
T ss_pred             HhcC-CCCEEEEEecCCchhH--hHHHHHHHHhcCCCEEEEEEchHhccccChh---hHHHHHHHHhC------CCEEEE
Confidence            6521 2799999999986321  1223334445689999999999987543222   12445554443      589999


Q ss_pred             ecCCCCChHHHHHHHHHHHh
Q 027757          196 SSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ||++|.|++++++++.+.++
T Consensus       145 SA~~~~~v~~l~~~l~~~~~  164 (165)
T 2wji_A          145 SAAKKMGIEELKKAISIAVK  164 (165)
T ss_dssp             BGGGTBSHHHHHHHHHHHTT
T ss_pred             EcCCCCCHHHHHHHHHHHhh
Confidence            99999999999999988654

>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...

Probab=99.91  E-value=2.7e-23  Score=150.16  Aligned_cols=154  Identities=17%  Similarity=0.142  Sum_probs=104.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      +||+++|++|+|||||+++|++..+. ...++.+..  ..... .+..+.+|||||..          .+..++..+++.
T Consensus         1 ~ki~~~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~~~~   67 (164)
T 1r8s_A            1 MRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNISFTVWDVGGQD----------KIRPLWRHYFQN   67 (164)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSS-CCCCCSSCC--EEEEECSSCEEEEEECCCCG----------GGHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHcCCcC-cccCcCcee--EEEEEECCEEEEEEEcCCCh----------hhHHHHHHHhcc
Confidence            58999999999999999999987433 333433322  11222 24579999999952          346677777777


Q ss_pred             cCCccEEEEEEeCCCCCCcccHH-HHH-Hhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCCC
Q 027757          119 RESLVGVLLLIDASVPPQKIDLD-CAN-WLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHPP  191 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~-~~~-~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~  191 (219)
                         +|++++|+|++++.+..... .+. .+.   ..+.|+++|+||+|+....       ..+++.+.+....  ....+
T Consensus        68 ---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~  137 (164)
T 1r8s_A           68 ---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRHRNWY  137 (164)
T ss_dssp             ---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCSSCCEE
T ss_pred             ---CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCCC-------CHHHHHHHhCcccccCccEE
Confidence               89999999999876554321 111 222   1479999999999996531       1233333332211  12356


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++||+++.|+++++++|.+.+..
T Consensus       138 ~~~~Sa~~~~gi~~l~~~l~~~i~~  162 (164)
T 1r8s_A          138 IQATCATSGDGLYEGLDWLSNQLRN  162 (164)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHC--
T ss_pred             EEEcccCCCcCHHHHHHHHHHHHhh
Confidence            9999999999999999999887654

>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*

Probab=99.91  E-value=2e-24  Score=162.13  Aligned_cols=159  Identities=14%  Similarity=0.075  Sum_probs=103.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC--eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK--SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ...++|+++|.+|+|||||+++|++..+.....++.+..........+.  .+.++||||..          .|..+...
T Consensus        28 ~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~   97 (204)
T 4gzl_A           28 GQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGLE----------DYDRLRPL   97 (204)
T ss_dssp             --CEEEEEEESTTSSHHHHHHHHHHSCCCC-CCCCSEEEEEEEEECC-CEEEEEEEEECCSG----------GGTTTGGG
T ss_pred             CCeEEEEEECcCCCCHHHHHHHHHhCCCCCCcCCeecceeEEEEEECCEEEEEEEEECCCch----------hhHHHHHH
Confidence            4578999999999999999999998755544444443322222222222  45699999963          22334445


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ  180 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~  180 (219)
                      +++.   +|++|+|+|++++.+.....  ....+..  .++|+++|+||+|+.....          +.+..++...+.+
T Consensus        98 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  174 (204)
T 4gzl_A           98 SYPQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  174 (204)
T ss_dssp             GCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             Hhcc---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHH
Confidence            5555   89999999999876655432  2222332  4899999999999876431          1122223333333


Q ss_pred             HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .+.     ..+++++||++|.|++++++++.+.
T Consensus       175 ~~~-----~~~~~~~SA~~g~gi~~l~~~l~~~  202 (204)
T 4gzl_A          175 EIG-----AVKYLECSALTQRGLKTVFDEAIRA  202 (204)
T ss_dssp             HTT-----CSEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             hcC-----CcEEEEeeCCCCCCHHHHHHHHHHH
Confidence            222     1469999999999999999999874

>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*

Probab=99.91  E-value=8.5e-24  Score=158.62  Aligned_cols=158  Identities=20%  Similarity=0.246  Sum_probs=108.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+.+.....+..++   .+.+|||||...          +..+..
T Consensus         6 ~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~   75 (207)
T 1vg8_A            6 KVLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQER----------FQSLGV   75 (207)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGG----------GSCSCC
T ss_pred             CcceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEeCCCcHH----------HHHhHH
Confidence            3468999999999999999999999865555566666555544444443   689999999532          122223


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN  185 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~  185 (219)
                      .+++.   +|++|+|+|++++.+..... ....+.       ..+.|+++|+||+|+..   +.+..+....+...    
T Consensus        76 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~----  145 (207)
T 1vg8_A           76 AFYRG---ADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLEN---RQVATKRAQAWCYS----  145 (207)
T ss_dssp             GGGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSSC---CCSCHHHHHHHHHH----
T ss_pred             HHHhC---CcEEEEEEECCCHHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCcc---cccCHHHHHHHHHh----
Confidence            44555   89999999999876544431 111111       14789999999999973   22333334443332    


Q ss_pred             CCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          186 YPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       186 ~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       ....+++++||++|.|+++++++|.+.+.
T Consensus       146 -~~~~~~~~~Sa~~g~gi~~l~~~l~~~~~  174 (207)
T 1vg8_A          146 -KNNIPYFETSAKEAINVEQAFQTIARNAL  174 (207)
T ss_dssp             -TTSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -cCCceEEEEeCCCCCCHHHHHHHHHHHHH
Confidence             12368999999999999999999988654

>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...

Probab=99.91  E-value=4.1e-24  Score=157.53  Aligned_cols=158  Identities=14%  Similarity=0.069  Sum_probs=106.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+...... ...++   .+.+|||||..          .|..+...+
T Consensus         5 ~~~i~~~G~~~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~   73 (186)
T 1mh1_A            5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQE----------DYDRLRPLS   73 (186)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEE-EEETTEEEEEEEECCCCSG----------GGTTTGGGG
T ss_pred             EEEEEEECCCCCCHHHHHHHHHcCCCCCCcCCcccceeEEE-EEECCEEEEEEEEECCCCH----------hHHHHHHHh
Confidence            57999999999999999999998765555555544333222 22222   56799999963          122333455


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQL  181 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~~  181 (219)
                      ++.   +|++++|+|++++.+.....  ....+..  .+.|+++|+||+|+.+...          +.+..++..++.+.
T Consensus        74 ~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  150 (186)
T 1mh1_A           74 YPQ---TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKE  150 (186)
T ss_dssp             CTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             ccC---CcEEEEEEECCChhhHHHHHHHHHHHHHHhCCCCCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHh
Confidence            555   89999999999866554432  2223332  3899999999999875421          22333333333333


Q ss_pred             HHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       182 ~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+     ..+++++||++|.|++++++++.+.+.
T Consensus       151 ~~-----~~~~~~~Sa~~g~gi~~l~~~l~~~~~  179 (186)
T 1mh1_A          151 IG-----AVKYLECSALTQRGLKTVFDEAIRAVL  179 (186)
T ss_dssp             TT-----CSEEEECCTTTCTTHHHHHHHHHHHHS
T ss_pred             cC-----CcEEEEecCCCccCHHHHHHHHHHHHh
Confidence            22     138999999999999999999988764

>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*

Probab=99.91  E-value=2.3e-24  Score=160.32  Aligned_cols=157  Identities=15%  Similarity=0.182  Sum_probs=106.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEE-----Ee---cCeEEEEeCCCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHF-----LV---NKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~-----~~---~~~~~liDtpg~~~~~~~  101 (219)
                      ...+||+++|++|+|||||++.+.+. +...+.+..       ..|......     ..   ...+.+|||||..     
T Consensus        12 ~~~~ki~vvG~~~~GKssL~~~l~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~-----   85 (198)
T 3t1o_A           12 EINFKIVYYGPGLSGKTTNLKWIYSK-VPEGRKGEMVSLATEDERTLFFDFLPLDIGEVKGFKTRFHLYTVPGQV-----   85 (198)
T ss_dssp             EEEEEEEEECSTTSSHHHHHHHHHHT-SCGGGBCCCEEEECSSCEEEEEEECCSSCCCSSSCEEEEEEEECCSCC-----
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHhh-ccccccccccccccccccceeeeecccccccccCCceEEEEEeCCChH-----
Confidence            44689999999999999999888875 454433221       112211111     11   1258899999953     


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH----HHHHHhcc-----CCCcEEEEEEcccccccccCCCch
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL----DCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPD  172 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~----~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~  172 (219)
                           .|..++..+++.   +|++|+|+|++++.+....    .+..|+..     .++|+++|+||+|+...    +..
T Consensus        86 -----~~~~~~~~~~~~---~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~----~~~  153 (198)
T 3t1o_A           86 -----FYNASRKLILRG---VDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA----LPV  153 (198)
T ss_dssp             -----SCSHHHHHHTTT---CCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC----CCH
T ss_pred             -----HHHHHHHHHHhc---CCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc----cCH
Confidence                 234567778777   8999999999954333322    33345543     58999999999999753    223


Q ss_pred             HhHHHHHHHHHhcCCCCC-CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          173 ENIKSFQQLIRENYPHHP-PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       173 ~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++.+++.+.    .  .. +++++||++|.|+++++++|.+.+...
T Consensus       154 ~~~~~~~~~----~--~~~~~~~~Sa~~~~gv~~l~~~l~~~i~~~  193 (198)
T 3t1o_A          154 EMVRAVVDP----E--GKFPVLEAVATEGKGVFETLKEVSRLVLAR  193 (198)
T ss_dssp             HHHHHHHCT----T--CCSCEEECBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHh----c--CCceEEEEecCCCcCHHHHHHHHHHHHHHH
Confidence            333333322    1  24 899999999999999999998876543

>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8

Probab=99.91  E-value=3e-23  Score=153.46  Aligned_cols=158  Identities=17%  Similarity=0.152  Sum_probs=106.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...++|+++|.+|+|||||+++|++..+. .+.++.+.+.... ...+..+.+|||||...          +..++..++
T Consensus        14 ~~~~~i~v~G~~~~GKssl~~~l~~~~~~-~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~~   81 (187)
T 1zj6_A           14 HQEHKVIIVGLDNAGKTTILYQFSMNEVV-HTSPTIGSNVEEI-VINNTRFLMWDIGGQES----------LRSSWNTYY   81 (187)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSCE-EEECCSCSSCEEE-EETTEEEEEEECCC--------------CGGGHHHH
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCCC-cCcCCCccceEEE-EECCEEEEEEECCCCHh----------HHHHHHHHh
Confidence            44689999999999999999999976544 5555554332211 12244789999999632          223445666


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (219)
                      +.   +|++|+|+|++++.+..... .+ ..+.   ..+.|+++|+||+|+....       ..++..+.+...  ....
T Consensus        82 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~~  151 (187)
T 1zj6_A           82 TN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-------TVAEISQFLKLTSIKDHQ  151 (187)
T ss_dssp             TT---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTGGGCCSSC
T ss_pred             cC---CCEEEEEEeCCCHHHHHHHHHHHHHHHhchhhCCCeEEEEEECCCCcCCC-------CHHHHHHHhChhhhcCCC
Confidence            66   89999999999987655431 11 2222   2579999999999997531       122333333221  1234


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+++++||++|.|+++++++|.+.+..
T Consensus       152 ~~~~~~Sa~~g~gi~~l~~~l~~~~~~  178 (187)
T 1zj6_A          152 WHIQACCALTGEGLCQGLEWMMSRLKI  178 (187)
T ss_dssp             EEEEECBTTTTBTHHHHHHHHHHHHCC
T ss_pred             cEEEEccCCCCcCHHHHHHHHHHHHHH
Confidence            589999999999999999999887643

>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C

Probab=99.90  E-value=2.3e-24  Score=158.42  Aligned_cols=160  Identities=13%  Similarity=0.047  Sum_probs=99.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..........  ...+.+|||||...          |..+...
T Consensus         6 ~~~~ki~v~G~~~~GKssl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~   75 (182)
T 3bwd_D            6 SRFIKCVTVGDGAVGKTCLLISYTSNTFPTDYVPTVFDNFSANVVVNGATVNLGLWDTAGQED----------YNRLRPL   75 (182)
T ss_dssp             -CCCEEEEECSTTSSHHHHHHHHHHSCCC----------CBCCCC-------CEEECCCC-CT----------TTTTGGG
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCeeeeeEEEEEEECCEEEEEEEEECCCChh----------hhhhHHh
Confidence            45789999999999999999999987544444443332221111111  22466999999532          2233345


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc--------CCCchHhHHHHHHHH
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK--------GRRPDENIKSFQQLI  182 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~--------~~~~~~~~~~~~~~~  182 (219)
                      +++.   +|++++|+|++++.+.....  ....+..  .+.|+++|+||+|+.+...        ..+..++..++.+.+
T Consensus        76 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~  152 (182)
T 3bwd_D           76 SYRG---ADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLI  152 (182)
T ss_dssp             GGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHH
T ss_pred             hccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHc
Confidence            5555   89999999999876554332  2222322  4799999999999875422        112334444554444


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.     .+++++||+++.|+++++++|.+.+
T Consensus       153 ~~-----~~~~~~Sa~~~~gi~~l~~~l~~~i  179 (182)
T 3bwd_D          153 GA-----PAYIECSSKSQENVKGVFDAAIRVV  179 (182)
T ss_dssp             TC-----SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CC-----CEEEEEECCCCCCHHHHHHHHHHHH
Confidence            31     3799999999999999999998764

>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}

Probab=99.90  E-value=3.5e-24  Score=161.49  Aligned_cols=161  Identities=14%  Similarity=0.026  Sum_probs=109.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+..... ....++   .+.+|||||....          ..+..
T Consensus         7 ~~~~ki~i~G~~~~GKTsli~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~i~Dt~G~~~~----------~~~~~   75 (212)
T 2j0v_A            7 SKFIKCVTVGDGAVGKTCMLICYTSNKFPTDYIPTVFDNFSA-NVAVDGQIVNLGLWDTAGQEDY----------SRLRP   75 (212)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCSSCCCEEE-EEECSSCEEEEEEECCCCCCCC----------CC--C
T ss_pred             CceEEEEEECCCCCCHHHHHHHHhcCCCCccCCCccceeEEE-EEEECCEEEEEEEEECCCcHHH----------HHHHH
Confidence            346899999999999999999999876555555555433322 222333   6899999996422          22344


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccccC------CCchHhHHHHHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAKG------RRPDENIKSFQQLIR  183 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~~~~~~  183 (219)
                      .+++.   +|++|+|+|++++.+....  .....+..  .+.|+++|+||+|+......      .+..++.+++.+.++
T Consensus        76 ~~~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~  152 (212)
T 2j0v_A           76 LSYRG---ADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIG  152 (212)
T ss_dssp             GGGTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHT
T ss_pred             hhccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcC
Confidence            55666   8999999999987655432  12222222  38999999999998754211      123344455554443


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .     .+++++||+++.|+++++++|.+.+..
T Consensus       153 ~-----~~~~~~Sa~~g~gi~~l~~~l~~~~~~  180 (212)
T 2j0v_A          153 A-----AAYIECSSKTQQNVKAVFDTAIKVVLQ  180 (212)
T ss_dssp             C-----SEEEECCTTTCTTHHHHHHHHHHHHHC
T ss_pred             C-----ceEEEccCCCCCCHHHHHHHHHHHHhh
Confidence            1     479999999999999999999886643

>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}

Probab=99.90  E-value=1.4e-23  Score=155.34  Aligned_cols=156  Identities=13%  Similarity=0.087  Sum_probs=109.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+||+++|.+|+|||||+++|++..+...+.++.+...... ...++   .+.+|||||.....          .+ .
T Consensus        19 ~~~~ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~~~~----------~~-~   86 (187)
T 3c5c_A           19 PLEVNLAILGRRGAGKSALTVKFLTKRFISEYDPNLEDTYSSE-ETVDHQPVHLRVMDTADLDTPR----------NC-E   86 (187)
T ss_dssp             -CEEEEEEECCTTSSHHHHHHHHHHSSCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCC---CC----------CT-H
T ss_pred             CceEEEEEECCCCCcHHHHHHHHHhCCCCcccCCCccceeeEE-EEECCEEEEEEEEECCCCCcch----------hH-H
Confidence            4468999999999999999999999866666666665443222 22333   57899999954211          11 2


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+..      .+.|+++|+||+|+...  +.+..++.+++.+.++   
T Consensus        87 ~~~~~---~~~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~--~~v~~~~~~~~~~~~~---  158 (187)
T 3c5c_A           87 RYLNW---AHAFLVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY--RQVTKAEGVALAGRFG---  158 (187)
T ss_dssp             HHHTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT---
T ss_pred             HHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc--CccCHHHHHHHHHHcC---
Confidence            35555   89999999999866554322 1111211      58999999999999654  3344555666666553   


Q ss_pred             CCCCCeEEeec-CCCCChHHHHHHHHHHHh
Q 027757          187 PHHPPWIMTSS-VTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       187 ~~~~~~~~~Sa-~~~~~v~el~~~l~~~~~  215 (219)
                         ++++++|| +++.|+++++++|.+.+.
T Consensus       159 ---~~~~e~Sa~~~g~gv~~lf~~l~~~i~  185 (187)
T 3c5c_A          159 ---CLFFEVSACLDFEHVQHVFHEAVREAR  185 (187)
T ss_dssp             ---CEEEECCSSSCSHHHHHHHHHHHHHHH
T ss_pred             ---CcEEEEeecCccccHHHHHHHHHHHHh
Confidence               58999999 899999999999988764

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.90  E-value=1.4e-23  Score=174.44  Aligned_cols=172  Identities=22%  Similarity=0.297  Sum_probs=118.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+|+|++. ......+.+++|.+..  .+.. +..+.+|||||+..........+.|..+..
T Consensus       173 ~~~~ki~lvG~~nvGKSSLin~l~~~-~~~~~~~~~gtT~d~~~~~~~~~~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~  251 (436)
T 2hjg_A          173 EEVIQFCLIGRPNVGKSSLVNAMLGE-ERVIVSNVAGTTRDAVDTSFTYNQQEFVIVDTAGMRKKGKVYETTEKYSVLRA  251 (436)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHTS-TTEEEC---------CCEEEEETTEEEEETTHHHHTCBTTBCCCCSHHHHHHH
T ss_pred             ccCcEEEEEcCCCCCHHHHHHHHhCC-CceeecCCCCceeeeeEEEEEECCeEEEEEECCCcCcCccccchHHHHHHHHH
Confidence            45689999999999999999999997 3455666777776542  2223 347999999997533222233455555544


Q ss_pred             -HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC--CCC
Q 027757          114 -GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP--HHP  190 (219)
Q Consensus       114 -~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  190 (219)
                       .+++.   +|++++|+|++++.+.++......+...++|+++|+||+|+.+...  .   ..++..+.+...+.  ...
T Consensus       252 ~~~~~~---ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~~~--~---~~~~~~~~~~~~l~~~~~~  323 (436)
T 2hjg_A          252 LKAIDR---SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDKDE--S---TMKEFEENIRDHFQFLDYA  323 (436)
T ss_dssp             HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCCCT--T---HHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHHh---CCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCcch--H---HHHHHHHHHHHhcccCCCC
Confidence             35666   8999999999999998887777777778999999999999976421  1   12233333322221  236


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +++++||++|.|++++++.+.+....+
T Consensus       324 ~~~~~SA~tg~~v~~l~~~i~~~~~~~  350 (436)
T 2hjg_A          324 PILFMSALTKKRIHTLMPAIIKASENH  350 (436)
T ss_dssp             CEEECCTTTCTTGGGHHHHHHHHHHHH
T ss_pred             CEEEEecccCCCHHHHHHHHHHHHHHh
Confidence            899999999999999999998877653

>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...

Probab=99.90  E-value=5.5e-24  Score=159.31  Aligned_cols=160  Identities=14%  Similarity=0.149  Sum_probs=106.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+++|++..+...+.++.+...... ...++   .+.+|||||..          .|..+..
T Consensus        23 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   91 (201)
T 2gco_A           23 AIRKKLVIVGDGACGKTCLLIVFSKDQFPEVYVPTVFENYIAD-IEVDGKQVELALWDTAGQE----------DYDRLRP   91 (201)
T ss_dssp             CEEEEEEEEESTTSSHHHHHHHHHHSSCCSSCCCSSCCCCEEE-EEETTEEEEEEEECCCCSG----------GGTTTGG
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCcCCcccCCcccceEEEE-EEECCEEEEEEEEECCCch----------hHHHHHH
Confidence            3467999999999999999999999765544444444333222 23333   68899999942          2233344


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQ  179 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~  179 (219)
                      .+++.   +|++|+|+|++++.+....  .....+..  .+.|+++|+||+|+.....          +.+..++..++.
T Consensus        92 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  168 (201)
T 2gco_A           92 LSYPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMA  168 (201)
T ss_dssp             GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             HhcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHH
Confidence            55555   8999999999986554432  12222222  4899999999999976421          122233333333


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +.++     ..+++++||++|.|+++++++|.+.+-
T Consensus       169 ~~~~-----~~~~~~~SA~~g~gi~~l~~~i~~~~l  199 (201)
T 2gco_A          169 NRIS-----AFGYLECSAKTKEGVREVFEMATRAGL  199 (201)
T ss_dssp             HHTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HhCC-----CcEEEEeeCCCCCCHHHHHHHHHHHHh
Confidence            3322     137999999999999999999988653

>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*

Probab=99.90  E-value=5e-24  Score=157.31  Aligned_cols=160  Identities=13%  Similarity=0.106  Sum_probs=109.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|++|+|||||+++|++..+...+.++.+...... ...+.   .+.+|||||..          .|..+..
T Consensus         5 ~~~~ki~v~G~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~----------~~~~~~~   73 (184)
T 1m7b_A            5 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTAS-FEIDTQRIELSLWDTSGSP----------YYDNVRP   73 (184)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEE-EECSSCEEEEEEEEECCSG----------GGTTTGG
T ss_pred             ceEEEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceeEEEE-EEECCEEEEEEEEECCCCh----------hhhhhHH
Confidence            3468999999999999999999999765555555554443222 22222   68899999953          1223334


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQ  179 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~  179 (219)
                      .+++.   +|++|+|+|++++.+....  .....+..  .+.|+++|+||+|+....          .+.+..++..++.
T Consensus        74 ~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  150 (184)
T 1m7b_A           74 LSYPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA  150 (184)
T ss_dssp             GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             hhcCC---CcEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHH
Confidence            45555   8999999999987655432  11122222  579999999999997531          1334445555555


Q ss_pred             HHHHhcCCCCCCeEEeecC-CCCChHHHHHHHHHHHh
Q 027757          180 QLIRENYPHHPPWIMTSSV-TGLGRDELLLHMSQLRN  215 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~-~~~~v~el~~~l~~~~~  215 (219)
                      +.++.     .+++++||+ ++.|++++|+++.+.+-
T Consensus       151 ~~~~~-----~~~~e~Sa~~~~~gi~~l~~~i~~~~l  182 (184)
T 1m7b_A          151 KQIGA-----ATYIECSALQSENSVRDIFHVATLACV  182 (184)
T ss_dssp             HHHTC-----SEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             HHcCC-----cEEEEeeecCCCcCHHHHHHHHHHHHh
Confidence            55431     589999999 68999999999988653

>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A

Probab=99.90  E-value=9.9e-23  Score=158.16  Aligned_cols=159  Identities=26%  Similarity=0.307  Sum_probs=112.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+|+|++..+.  ..+.+++|.....  +.. +..+.+|||||..........    +.+...|
T Consensus         5 ~~kI~lvG~~nvGKTsL~n~l~g~~~~--~~~~pg~tv~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----e~v~~~~   78 (258)
T 3a1s_A            5 MVKVALAGCPNVGKTSLFNALTGTKQY--VANWPGVTVEKKEGVFTYKGYTINLIDLPGTYSLGYSSID----EKIARDY   78 (258)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSSCCSSSHH----HHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCCCc--ccCCCCceEEEEEEEEEECCeEEEEEECCCcCccCCCCHH----HHHHHHH
Confidence            578999999999999999999997432  4455566654433  222 337999999997533211111    2344555


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      +.. ..+|++++|+|+++..+.  ......+.+.++|+++|+||+|+.......   .+.+.+.+.++      ++++++
T Consensus        79 ~~~-~~~d~ii~V~D~t~~~~~--~~~~~~l~~~~~pvilv~NK~Dl~~~~~i~---~~~~~l~~~lg------~~vi~~  146 (258)
T 3a1s_A           79 LLK-GDADLVILVADSVNPEQS--LYLLLEILEMEKKVILAMTAIDEAKKTGMK---IDRYELQKHLG------IPVVFT  146 (258)
T ss_dssp             HHH-SCCSEEEEEEETTSCHHH--HHHHHHHHTTTCCEEEEEECHHHHHHTTCC---BCHHHHHHHHC------SCEEEC
T ss_pred             Hhh-cCCCEEEEEeCCCchhhH--HHHHHHHHhcCCCEEEEEECcCCCCccchH---HHHHHHHHHcC------CCEEEE
Confidence            543 348999999999985432  344556666799999999999987654332   23455555554      699999


Q ss_pred             ecCCCCChHHHHHHHHHHHh
Q 027757          196 SSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ||++|.|++++++++.+.++
T Consensus       147 SA~~g~gi~el~~~i~~~~~  166 (258)
T 3a1s_A          147 SSVTGEGLEELKEKIVEYAQ  166 (258)
T ss_dssp             CTTTCTTHHHHHHHHHHHHH
T ss_pred             EeeCCcCHHHHHHHHHHHhh
Confidence            99999999999999988765

>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...

Probab=99.90  E-value=4.2e-24  Score=162.19  Aligned_cols=156  Identities=13%  Similarity=0.218  Sum_probs=114.3

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      .....+||+++|.+|+|||||+++|+...+...+.++.+++........+.   .+.+|||||..          .+..+
T Consensus        11 ~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~   80 (221)
T 3gj0_A           11 EPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQE----------KFGGL   80 (221)
T ss_dssp             CCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGG----------GTSCC
T ss_pred             CcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChH----------HHhHH
Confidence            345568999999999999999999776557777888888887766555443   68999999943          22233


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      ...+++.   +|++|+|+|++++.+.....  .|+..     .++|+++|+||+|+.+....    .....+.+...   
T Consensus        81 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~----~~~~~~~~~~~---  148 (221)
T 3gj0_A           81 RDGYYIQ---AQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDIKDRKVK----AKSIVFHRKKN---  148 (221)
T ss_dssp             CHHHHTT---CCEEEEEEETTCHHHHHTHH--HHHHHHHHHSTTCCEEEEEECTTSSSCSSC----GGGCCHHHHHT---
T ss_pred             HHHHHhc---CCEEEEEEECCCHHHHHHHH--HHHHHHHHhCCCCCEEEEEECCcccccccc----HHHHHHHHHcC---
Confidence            4556666   89999999999876654432  23222     48899999999999754321    22333333332   


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                         .+++++||+++.|+++++++|.+.+.
T Consensus       149 ---~~~~~~Sa~~~~gi~~l~~~l~~~l~  174 (221)
T 3gj0_A          149 ---LQYYDISAKSNYNFEKPFLWLARKLI  174 (221)
T ss_dssp             ---CEEEECBGGGTBTTTHHHHHHHHHHH
T ss_pred             ---CEEEEEeCCCCCCHHHHHHHHHHHHH
Confidence               58999999999999999999988654

>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*

Probab=99.90  E-value=1.5e-23  Score=154.32  Aligned_cols=155  Identities=17%  Similarity=0.152  Sum_probs=104.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ....++|+++|.+|+|||||+++|++..+ ..+.++.+.+.... ...+..+.+|||||...          +..++..+
T Consensus        18 ~~~~~~i~v~G~~~~GKSsli~~l~~~~~-~~~~~t~~~~~~~~-~~~~~~~~i~Dt~G~~~----------~~~~~~~~   85 (181)
T 2h17_A           18 GSQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNVEEI-VINNTRFLMWDIGGQES----------LRSSWNTY   85 (181)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHTTSC-EEEECCSSSSCEEE-EETTEEEEEEEESSSGG----------GTCGGGGG
T ss_pred             CCceeEEEEECCCCCCHHHHHHHHhcCCC-CccCCcCceeeEEE-EECCEEEEEEECCCCHh----------HHHHHHHH
Confidence            35578999999999999999999999854 55556665433211 12345789999999632          22334555


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~  188 (219)
                      ++.   +|++|+|+|++++.+.....  +...+.   ..++|+++|+||+|+....       ..++..+.+..  ....
T Consensus        86 ~~~---~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~  155 (181)
T 2h17_A           86 YTN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECM-------TVAEISQFLKLTSIKDH  155 (181)
T ss_dssp             GTT---CCEEEEEEETTCTTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSS
T ss_pred             hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHhChhhCCCeEEEEEECCCcccCC-------CHHHHHHHhCcccccCC
Confidence            555   89999999999987665431  222222   2689999999999997531       12222222211  1122


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      .++++++||+++.|+++++++|.+
T Consensus       156 ~~~~~~~Sa~~g~gi~~l~~~l~~  179 (181)
T 2h17_A          156 QWHIQACCALTGEGLCQGLEWMMS  179 (181)
T ss_dssp             CEEEEECBTTTTBTHHHHHHHHHT
T ss_pred             ceEEEEccCCCCcCHHHHHHHHHh
Confidence            357999999999999999999875

>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C

Probab=99.90  E-value=3.6e-24  Score=160.63  Aligned_cols=159  Identities=17%  Similarity=0.177  Sum_probs=78.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC--cccccccCCCCeeEEeeEEEecC-----eEEEEeCCCCCCCCCCcchhhhHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK--KELALTSKKPGKTQLINHFLVNK-----SWYIVDLPGYGFAKAPDVTRMDWS  109 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~~~~-----~~~liDtpg~~~~~~~~~~~~~~~  109 (219)
                      ...++|+++|++|+|||||+++|++.  .+.....++.+.+.....+..++     .+.+|||||.          ..+.
T Consensus        18 ~~~~~i~v~G~~~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~Dt~G~----------~~~~   87 (208)
T 2yc2_C           18 TLRCKVAVVGEATVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIPDTTVSVELFLLDTAGS----------DLYK   87 (208)
T ss_dssp             EEEEEEEEC----------------------------------CEEEECTTSSEEEEEEEEETTTT----------HHHH
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEECCcccEEEEEEEECCCc----------HHHH
Confidence            34679999999999999999999987  44444444444333333333332     5899999995          3445


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc------CCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR------NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI  182 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  182 (219)
                      .+...+++.   +|++|+|+|++++.+..... .+..+..      .++|+++|+||+|+... .+.+..++..++.+.+
T Consensus        88 ~~~~~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~-~~~v~~~~~~~~~~~~  163 (208)
T 2yc2_C           88 EQISQYWNG---VYYAILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQ-RHQVRLDMAQDWATTN  163 (208)
T ss_dssp             HHHSTTCCC---CCEEEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC--------CCCHHHHHHHHHHT
T ss_pred             HHHHHHHhh---CcEEEEEEECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccchh-hccCCHHHHHHHHHHc
Confidence            666666666   89999999999876544321 1222221      47899999999999761 1233344555555443


Q ss_pred             HhcCCCCCCeEEeecCC-CCChHHHHHHHHHHHh
Q 027757          183 RENYPHHPPWIMTSSVT-GLGRDELLLHMSQLRN  215 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~-~~~v~el~~~l~~~~~  215 (219)
                      +      ++++++||++ +.|+++++++|.+.+.
T Consensus       164 ~------~~~~~~Sa~~~~~gi~~l~~~i~~~~~  191 (208)
T 2yc2_C          164 T------LDFFDVSANPPGKDADAPFLSIATTFY  191 (208)
T ss_dssp             T------CEEEECCC-------CHHHHHHHHHHH
T ss_pred             C------CEEEEeccCCCCcCHHHHHHHHHHHHH
Confidence            2      6899999999 9999999999988654

>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*

Probab=99.90  E-value=8e-24  Score=158.17  Aligned_cols=156  Identities=19%  Similarity=0.261  Sum_probs=100.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+|+++|++|+|||||+++|++.. ...+.++.+.+.  .....+ ..+.+|||||...          ++.++..++
T Consensus        24 ~~~ki~lvG~~~vGKSsLi~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~l~i~Dt~G~~~----------~~~~~~~~~   90 (198)
T 1f6b_A           24 KTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTS--EELTIAGMTFTTFDLGGHIQ----------ARRVWKNYL   90 (198)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSC--EEEEETTEEEEEEEECC--------------CCGGGGGG
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhcCC-CCccCCCCCcee--EEEEECCEEEEEEECCCcHh----------hHHHHHHHH
Confidence            35799999999999999999999874 344555554432  223333 4789999999532          222345566


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--------
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR--------  183 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--------  183 (219)
                      +.   +|++++|+|++++.+.....  +...+.   ..++|+++|+||+|+...    +..+++.++.....        
T Consensus        91 ~~---~d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~  163 (198)
T 1f6b_A           91 PA---INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEA----ISEERLREMFGLYGQTTGKGSV  163 (198)
T ss_dssp             GG---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTC----CCHHHHHHHHTCTTTCCCSSCC
T ss_pred             hc---CCEEEEEEECCCHHHHHHHHHHHHHHHhCcccCCCcEEEEEECCCcccc----CCHHHHHHHhCccccccccccc
Confidence            66   89999999999876554321  111221   257999999999999752    22333333322111        


Q ss_pred             ---hcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          184 ---ENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       184 ---~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                         .......+++++||++|.|+++++++|.+.
T Consensus       164 ~~~~~~~~~~~~~~~SA~~g~gv~~l~~~l~~~  196 (198)
T 1f6b_A          164 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQY  196 (198)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             ccccccCceEEEEEEECCCCCCHHHHHHHHHHh
Confidence               000123579999999999999999999764

>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*

Probab=99.90  E-value=3.3e-23  Score=154.09  Aligned_cols=163  Identities=14%  Similarity=0.118  Sum_probs=106.6

Q ss_pred             CCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhH
Q 027757           30 RAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDW  108 (219)
Q Consensus        30 ~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~  108 (219)
                      -.+.+.....++|+++|++|+|||||+++|++..+. ...++.+..  ...... +..+.+|||||...          +
T Consensus        20 ~~~~~~~~~~~ki~v~G~~~vGKSsLi~~l~~~~~~-~~~~t~~~~--~~~~~~~~~~~~i~Dt~G~~~----------~   86 (192)
T 2b6h_A           20 LFSRIFGKKQMRILMVGLDAAGKTTILYKLKLGEIV-TTIPTIGFN--VETVEYKNICFTVWDVGGQDK----------I   86 (192)
T ss_dssp             GGGGTTTTSCEEEEEEESTTSSHHHHHHHHCSSCCE-EEEEETTEE--EEEEEETTEEEEEEECC---------------
T ss_pred             HHHHhccCCccEEEEECCCCCCHHHHHHHHHhCCcc-ccCCcCcee--EEEEEECCEEEEEEECCCCHh----------H
Confidence            334455566899999999999999999999987543 333333321  122222 34789999999632          2


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HH-HHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CA-NWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      ..++..+++.   +|++|+|+|++++.+..... .+ ..+..   .+.|+++|+||+|+....       ..+++.+.+.
T Consensus        87 ~~~~~~~~~~---~d~iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~~-------~~~~i~~~~~  156 (192)
T 2b6h_A           87 RPLWRHYFQN---TQGLIFVVDSNDRERVQESADELQKMLQEDELRDAVLLVFANKQDMPNAM-------PVSELTDKLG  156 (192)
T ss_dssp             CTTHHHHHHT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTT
T ss_pred             HHHHHHHhcc---CCEEEEEEECCCHHHHHHHHHHHHHHhcccccCCCeEEEEEECCCCCCCC-------CHHHHHHHhC
Confidence            3345566666   89999999999876554321 11 12221   479999999999996531       1233333332


Q ss_pred             hcC--CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          184 ENY--PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       184 ~~~--~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...  ....+++++||+++.|+++++++|.+.+.
T Consensus       157 ~~~~~~~~~~~~~~SA~~g~gi~~l~~~l~~~i~  190 (192)
T 2b6h_A          157 LQHLRSRTWYVQATCATQGTGLYDGLDWLSHELS  190 (192)
T ss_dssp             GGGCSSCCEEEEECBTTTTBTHHHHHHHHHHHTT
T ss_pred             cccccCCceEEEECcCCCcCCHHHHHHHHHHHHh
Confidence            211  12357899999999999999999988764

>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*

Probab=99.90  E-value=1.4e-23  Score=155.87  Aligned_cols=153  Identities=21%  Similarity=0.250  Sum_probs=102.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+|+++|++|+|||||+++|++.. ...+.++.+.+.  ..... +..+.++||||...          ++.+...++
T Consensus        22 ~~~ki~~vG~~~vGKSsli~~l~~~~-~~~~~~t~~~~~--~~~~~~~~~~~i~Dt~G~~~----------~~~~~~~~~   88 (190)
T 1m2o_B           22 KHGKLLFLGLDNAGKTTLLHMLKNDR-LATLQPTWHPTS--EELAIGNIKFTTFDLGGHIQ----------ARRLWKDYF   88 (190)
T ss_dssp             --CEEEEEESTTSSHHHHHHHHHHSC-CCCCCCCCSCEE--EEEEETTEEEEEEECCCSGG----------GTTSGGGGC
T ss_pred             CccEEEEECCCCCCHHHHHHHHhcCC-CCccccCCCCCe--EEEEECCEEEEEEECCCCHH----------HHHHHHHHH
Confidence            35799999999999999999999874 445555555432  22223 34789999999642          122334555


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH-HH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC-----
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD-CA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY-----  186 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-----  186 (219)
                      +.   +|++|+|+|++++.+..... .+ ..+.   ..+.|+++|+||+|+...    +..+   ++.+.+....     
T Consensus        89 ~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~----~~~~---~~~~~~~~~~~~~~~  158 (190)
T 1m2o_B           89 PE---VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNA----VSEA---ELRSALGLLNTTGSQ  158 (190)
T ss_dssp             TT---CCEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC----CCHH---HHHHHTTCSSCCC--
T ss_pred             hc---CCEEEEEEECCChHHHHHHHHHHHHHHcchhhcCCCEEEEEECCCCcCC----CCHH---HHHHHhCCccccccc
Confidence            55   89999999999876654321 11 1221   267999999999999752    2222   3333322211     


Q ss_pred             ----CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          187 ----PHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       187 ----~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                          ...++++++||++|.|+++++++|.+.
T Consensus       159 ~~~~~~~~~~~~~Sa~~g~gi~~l~~~l~~~  189 (190)
T 1m2o_B          159 RIEGQRPVEVFMCSVVMRNGYLEAFQWLSQY  189 (190)
T ss_dssp             -CCSSCCEEEEECBTTTTBSHHHHHHHHHTT
T ss_pred             cccccceEEEEEeECCcCCCHHHHHHHHHhh
Confidence                123579999999999999999998753

>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2

Probab=99.90  E-value=1e-22  Score=153.71  Aligned_cols=157  Identities=16%  Similarity=0.201  Sum_probs=100.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec----CeEEEEeCCCCCCCCCCcchhhhHHH-H
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN----KSWYIVDLPGYGFAKAPDVTRMDWSS-F  111 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~----~~~~liDtpg~~~~~~~~~~~~~~~~-~  111 (219)
                      ...++|+++|++|+|||||+++|++..+...+.+.   +.....+..+    ..+.+|||||.          ..|.. +
T Consensus         5 ~~~~ki~vvG~~~~GKTsli~~l~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~i~Dt~G~----------~~~~~~~   71 (214)
T 2fh5_B            5 SSQRAVLFVGLCDSGKTLLFVRLLTGQYRDTQTSI---TDSSAIYKVNNNRGNSLTLIDLPGH----------ESLRFQL   71 (214)
T ss_dssp             ---CEEEEECSTTSSHHHHHHHHHHSCCCCBCCCC---SCEEEEEECSSTTCCEEEEEECCCC----------HHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCCcccccCCc---ceeeEEEEecCCCccEEEEEECCCC----------hhHHHHH
Confidence            34689999999999999999999987544433322   2222223333    36899999995          23455 6


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHh---------ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWL---------GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI  182 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~---------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  182 (219)
                      ...|++.   +|++|+|+|+++.... ......++         ...++|+++|+||+|+......   ....+.+.+.+
T Consensus        72 ~~~~~~~---~~~~i~v~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~l~~~l  144 (214)
T 2fh5_B           72 LDRFKSS---ARAVVFVVDSAAFQRE-VKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSA---KLIQQQLEKEL  144 (214)
T ss_dssp             HHHHGGG---EEEEEEEEETTTHHHH-HHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCH---HHHHHHHHHHH
T ss_pred             HHHHHhh---CCEEEEEEECCCcCHH-HHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcccH---HHHHHHHHHHH
Confidence            7777777   8999999999863211 11222222         1357899999999999764321   22222333222


Q ss_pred             H-------------------h-cCC------------CCCCeEEeecCCC------CChHHHHHHHHHH
Q 027757          183 R-------------------E-NYP------------HHPPWIMTSSVTG------LGRDELLLHMSQL  213 (219)
Q Consensus       183 ~-------------------~-~~~------------~~~~~~~~Sa~~~------~~v~el~~~l~~~  213 (219)
                      .                   . ...            ..++++++||++|      .|++++|++|.+.
T Consensus       145 ~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~  213 (214)
T 2fh5_B          145 NTLRVTRSAAPSTLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  213 (214)
T ss_dssp             HHHHHHCC------------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             HHHhccchhccccccCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence            2                   1 111            1467999999999      9999999999875

>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8

Probab=99.90  E-value=1.6e-23  Score=157.49  Aligned_cols=159  Identities=13%  Similarity=0.124  Sum_probs=102.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|.+|+|||||+++|++..+.....++.+...... ...++   .+.+|||||....          ..+...
T Consensus        24 ~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~Dt~G~~~~----------~~~~~~   92 (207)
T 2fv8_A           24 IRKKLVVVGDGACGKTCLLIVFSKDEFPEVYVPTVFENYVAD-IEVDGKQVELALWDTAGQEDY----------DRLRPL   92 (207)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSSCC-------CCEEEEE-EEETTEEEEEEEEECTTCTTC----------TTTGGG
T ss_pred             cCcEEEEECcCCCCHHHHHHHHhcCCCCCcCCCcccceEEEE-EEECCEEEEEEEEECCCcHHH----------HHHHHh
Confidence            357999999999999999999999765544444444333222 33333   6889999995422          122334


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ  180 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~  180 (219)
                      ++..   +|++|+|+|++++.+....  .....+..  .+.|+++|+||+|+.....          +.+..++...+..
T Consensus        93 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  169 (207)
T 2fv8_A           93 SYPD---TDVILMCFSVDSPDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAV  169 (207)
T ss_dssp             GCTT---CCEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             hcCC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHH
Confidence            5555   8999999999986554332  12222222  4899999999999976421          1222223333332


Q ss_pred             HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .+.     ..+++++||++|.|+++++++|.+.+.
T Consensus       170 ~~~-----~~~~~~~SA~~g~gi~el~~~l~~~i~  199 (207)
T 2fv8_A          170 RIQ-----AYDYLECSAKTKEGVREVFETATRAAL  199 (207)
T ss_dssp             HTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcC-----CCEEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            221     137899999999999999999988654

>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8

Probab=99.90  E-value=1.6e-23  Score=157.41  Aligned_cols=160  Identities=13%  Similarity=0.104  Sum_probs=109.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+||+++|++|+|||||+++|++..+...+.++.+..... .+..++   .+.+|||||..          .|..+..
T Consensus        26 ~~~~ki~vvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   94 (205)
T 1gwn_A           26 NVKCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTA-SFEIDTQRIELSLWDTSGSP----------YYDNVRP   94 (205)
T ss_dssp             -CEEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEESSSSEEEEEEEEECCSG----------GGTTTGG
T ss_pred             ceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEE-EEEECCEEEEEEEEeCCCcH----------hhhHHHH
Confidence            446899999999999999999999986555445555443322 222222   68999999953          2223344


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH--HHHHHhcc--CCCcEEEEEEcccccccc----------cCCCchHhHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL--DCANWLGR--NNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQ  179 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~~--~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~  179 (219)
                      .+++.   +|++|+|+|++++.+....  .....+..  .+.|+++|+||+|+....          .+.+..++.+++.
T Consensus        95 ~~~~~---~d~~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  171 (205)
T 1gwn_A           95 LSYPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMA  171 (205)
T ss_dssp             GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             hhccC---CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHH
Confidence            55555   8999999999986654432  11122222  579999999999997531          1334445555555


Q ss_pred             HHHHhcCCCCCCeEEeecC-CCCChHHHHHHHHHHHh
Q 027757          180 QLIRENYPHHPPWIMTSSV-TGLGRDELLLHMSQLRN  215 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~-~~~~v~el~~~l~~~~~  215 (219)
                      +.++.     .+++++||+ ++.|++++|+++.+.+-
T Consensus       172 ~~~~~-----~~~~e~SAk~~~~gv~~lf~~l~~~~l  203 (205)
T 1gwn_A          172 KQIGA-----ATYIECSALQSENSVRDIFHVATLACV  203 (205)
T ss_dssp             HHHTC-----SEEEECCTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHcCC-----CEEEEeeeccCCcCHHHHHHHHHHHHh
Confidence            55431     579999999 68999999999988654

>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8

Probab=99.89  E-value=2.3e-22  Score=151.66  Aligned_cols=160  Identities=14%  Similarity=0.130  Sum_probs=104.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE-LALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      ...+||+|+|.+|+|||||+|+|++... .....+..+.+........++   .+.++||+|..       ++  +..+.
T Consensus        35 ~~~~kVvlvG~~~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~~~~~~l~~~Dt~g~~-------~~--~~~l~  105 (211)
T 2g3y_A           35 NTYYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENK-------GE--NEWLH  105 (211)
T ss_dssp             CCEEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTTTT-------HH--HHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEECCeeeEEEEeecCCCc-------ch--hhhHH
Confidence            3458999999999999999999997522 111112233232223333333   46789998842       22  24455


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      ..+++.   +|++|+|+|+++..++.... ....+.    ..++|+++|+||+|+...  +.+..++.+.+...+.    
T Consensus       106 ~~~~~~---a~~~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~~--r~v~~~e~~~~a~~~~----  176 (211)
T 2g3y_A          106 DHCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD----  176 (211)
T ss_dssp             HCCCCC---CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT----
T ss_pred             HHHHhh---CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhcC--ceEeHHHHHHHHHHcC----
Confidence            666666   89999999999876654432 112222    247999999999999754  3333333333333332    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                        ++++++||++|.|++++|++|.+.+..
T Consensus       177 --~~~~e~SAk~g~~v~elf~~l~~~i~~  203 (211)
T 2g3y_A          177 --CKFIETSAAVQHNVKELFEGIVRQVRL  203 (211)
T ss_dssp             --CEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             --CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence              589999999999999999999887644

>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.89  E-value=4e-23  Score=151.96  Aligned_cols=158  Identities=15%  Similarity=0.132  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...++|+++|++|+|||||+++|++..+ ..+.++.+....  .... +..+.++||||....          ...+..+
T Consensus        16 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~--~~~~~~~~~~i~Dt~G~~~~----------~~~~~~~   82 (183)
T 1moz_A           16 NKELRILILGLDGAGKTTILYRLQIGEV-VTTKPTIGFNVE--TLSYKNLKLNVWDLGGQTSI----------RPYWRCY   82 (183)
T ss_dssp             SSCEEEEEEEETTSSHHHHHHHTCCSEE-EEECSSTTCCEE--EEEETTEEEEEEEEC----C----------CTTGGGT
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhcCCc-CccCCcCccceE--EEEECCEEEEEEECCCCHhH----------HHHHHHH
Confidence            4578999999999999999999998744 555666653332  2222 457899999996421          1122344


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HH-HHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CA-NWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~  188 (219)
                      +..   +|++++|+|++++.+..... .+ ..+.   ..+.|+++|+||+|+....       ..++..+.+...  ...
T Consensus        83 ~~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~  152 (183)
T 1moz_A           83 YAD---TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-------SASEVSKELNLVELKDR  152 (183)
T ss_dssp             TTT---EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-------CHHHHHHHTTTTTCCSS
T ss_pred             hcc---CCEEEEEEECCCHHHHHHHHHHHHHHHcChhhCCCeEEEEEECCCCCCCC-------CHHHHHHHhCcccccCC
Confidence            444   89999999999887654421 12 2222   2678999999999997531       122333332221  112


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ..+++++||+++.|+++++++|.+.+.+.
T Consensus       153 ~~~~~~~Sa~~~~gi~~l~~~l~~~~~~~  181 (183)
T 1moz_A          153 SWSIVASSAIKGEGITEGLDWLIDVIKEE  181 (183)
T ss_dssp             CEEEEEEBGGGTBTHHHHHHHHHHHHHHH
T ss_pred             ceEEEEccCCCCcCHHHHHHHHHHHHHhc
Confidence            34799999999999999999999887654

>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8

Probab=99.89  E-value=3e-22  Score=150.59  Aligned_cols=179  Identities=34%  Similarity=0.525  Sum_probs=115.7

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      .+-....+|+++|++|+|||||+|+|++..+...+.+..+++.....+..++.+.++||||+............|.....
T Consensus        21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~  100 (210)
T 1pui_A           21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEEMKRKWQRALG  100 (210)
T ss_dssp             SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------CCHHHHHHHHH
T ss_pred             CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEECcCCcccccCHHHHHHHHHHHH
Confidence            44455679999999999999999999997545666777787766555555568899999997543222222234555556


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI  193 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (219)
                      .++.....++++++++|++.+.+..+..+..++...++|+++|.||+|+....++.   ...+.....+.. ......++
T Consensus       101 ~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~~~~~---~~~~~~~~~~~~-~~~~~~~~  176 (210)
T 1pui_A          101 EYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGARK---AQLNMVREAVLA-FNGDVQVE  176 (210)
T ss_dssp             HHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHHH---HHHHHHHHHHGG-GCSCEEEE
T ss_pred             HHHHhhhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCchhHH---HHHHHHHHHHHh-cCCCCceE
Confidence            66655556899999999998777655566677777889999999999987642110   012222222222 22235678


Q ss_pred             EeecCCCCChHHHHHHHHHHHhh
Q 027757          194 MTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++|++++.|+++++++|.+....
T Consensus       177 ~~Sal~~~~~~~l~~~l~~~~~~  199 (210)
T 1pui_A          177 TFSSLKKQGVDKLRQKLDTWFSE  199 (210)
T ss_dssp             ECBTTTTBSHHHHHHHHHHHHC-
T ss_pred             EEeecCCCCHHHHHHHHHHHHhh
Confidence            99999999999999999887654

>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*

Probab=99.89  E-value=4.7e-23  Score=161.39  Aligned_cols=162  Identities=20%  Similarity=0.196  Sum_probs=111.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+|+|++..  ....+.+++|.....  +. .+..+.+|||||..............+.+...|
T Consensus         3 ~~~I~lvG~~n~GKSTLin~l~g~~--~~v~~~~g~t~~~~~~~~~~~~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~   80 (274)
T 3i8s_A            3 KLTIGLIGNPNSGKTTLFNQLTGSR--QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQIACHY   80 (274)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHTTC--EEEEECTTSSSEEEEEEEECSSCEEEEEECCCCSCSCC----CCHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHhCCC--cccCCCCCeeEEEEEEEEEeCCCceEEEECcCCCccccccccCCHHHHHHHHH
Confidence            5799999999999999999999974  355566666654322  22 245799999999754321110011112344444


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      +. ...+|++|+|+|+++..  .......++.+.++|+++|+||+|+......   ....+.+.+.++      ++++++
T Consensus        81 ~~-~~~~d~ii~VvD~~~~~--~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~~~---~~~~~~l~~~lg------~~~i~~  148 (274)
T 3i8s_A           81 IL-SGDADLLINVVDASNLE--RNLYLTLQLLELGIPCIVALNMLDIAEKQNI---RIEIDALSARLG------CPVIPL  148 (274)
T ss_dssp             HH-HTCCSEEEEEEEGGGHH--HHHHHHHHHHHHTCCEEEEEECHHHHHHTTE---EECHHHHHHHHT------SCEEEC
T ss_pred             Hh-hcCCCEEEEEecCCChH--HHHHHHHHHHhcCCCEEEEEECccchhhhhH---HHHHHHHHHhcC------CCEEEE
Confidence            42 23389999999999743  2345566677779999999999998764322   123445555444      689999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q 027757          196 SSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~  214 (219)
                      ||++|.|++++++++.+.+
T Consensus       149 SA~~g~gi~el~~~i~~~~  167 (274)
T 3i8s_A          149 VSTRGRGIEALKLAIDRYK  167 (274)
T ss_dssp             CCGGGHHHHHHHHHHHTCC
T ss_pred             EcCCCCCHHHHHHHHHHHH
Confidence            9999999999999997754

>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}

Probab=99.89  E-value=4.7e-23  Score=152.58  Aligned_cols=159  Identities=19%  Similarity=0.121  Sum_probs=105.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...++|+++|++|+|||||+++|++..+ ....++.+...... ...+..+.+|||||......          ++..++
T Consensus        20 ~~~~~i~v~G~~~~GKssli~~l~~~~~-~~~~~t~~~~~~~~-~~~~~~~~~~Dt~G~~~~~~----------~~~~~~   87 (189)
T 2x77_A           20 DRKIRVLMLGLDNAGKTSILYRLHLGDV-VTTVPTVGVNLETL-QYKNISFEVWDLGGQTGVRP----------YWRCYF   87 (189)
T ss_dssp             TSCEEEEEEEETTSSHHHHHHHTCCSCC-EEECSSTTCCEEEE-EETTEEEEEEEECCSSSSCC----------CCSSSS
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHcCCC-CCcCCCCceEEEEE-EECCEEEEEEECCCCHhHHH----------HHHHHh
Confidence            3578999999999999999999988743 33444444332211 11244789999999642211          112333


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  189 (219)
                      +.   +|++|+|+|++++.+.....  +...+..   .+.|+++|+||+|+....       ..++..+.+...  ....
T Consensus        88 ~~---~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~  157 (189)
T 2x77_A           88 SD---TDAVIYVVDSTDRDRMGVAKHELYALLDEDELRKSLLLIFANKQDLPDAA-------SEAEIAEQLGVSSIMNRT  157 (189)
T ss_dssp             TT---CCEEEEEEETTCCTTHHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSC
T ss_pred             hc---CCEEEEEEeCCCHHHHHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCCC-------CHHHHHHHhChhhccCCc
Confidence            44   89999999999887654421  2222222   479999999999997542       122333332211  1223


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      .+++++||+++.|++++++++.+.+...
T Consensus       158 ~~~~~~Sa~~~~gi~~l~~~l~~~i~~~  185 (189)
T 2x77_A          158 WTIVKSSSKTGDGLVEGMDWLVERLREQ  185 (189)
T ss_dssp             EEEEECCTTTCTTHHHHHHHHHHHHHHT
T ss_pred             eEEEEccCCCccCHHHHHHHHHHHHHhc
Confidence            5799999999999999999999877543

>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*

Probab=99.89  E-value=5.2e-23  Score=153.41  Aligned_cols=167  Identities=16%  Similarity=0.082  Sum_probs=100.5

Q ss_pred             CCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE----ecCeEEEEeCCCCCCCCCCcchhhh
Q 027757           32 KDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL----VNKSWYIVDLPGYGFAKAPDVTRMD  107 (219)
Q Consensus        32 ~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~liDtpg~~~~~~~~~~~~~  107 (219)
                      ...+....+||+++|.+|+|||||++++.+. +..........+.......    ....+.+|||||....         
T Consensus        13 ~~~~~~~~~ki~~vG~~~vGKTsLi~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~---------   82 (196)
T 3llu_A           13 NLYFQGSKPRILLMGLRRSGKSSIQKVVFHK-MSPNETLFLESTNKIYKDDISNSSFVNFQIWDFPGQMDF---------   82 (196)
T ss_dssp             -------CCEEEEEESTTSSHHHHHHHHHSC-CCGGGGGGCCCCCSCEEEEECCTTSCCEEEEECCSSCCT---------
T ss_pred             CCcccCcceEEEEECCCCCCHHHHHHHHHhc-CCCcceeeeccccceeeeeccCCCeeEEEEEECCCCHHH---------
Confidence            3445566899999999999999999999986 3433222121111111111    1237999999995321         


Q ss_pred             HHHHH---HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhH-HHH
Q 027757          108 WSSFT---KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENI-KSF  178 (219)
Q Consensus       108 ~~~~~---~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~-~~~  178 (219)
                       ....   ..+++.   +|++|+|+|+++........+..|+..     .+.|+++|+||+|+.+.+........+ .+.
T Consensus        83 -~~~~~~~~~~~~~---~~~~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~v~~~~  158 (196)
T 3llu_A           83 -FDPTFDYEMIFRG---TGALIYVIDAQDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSDDHKIETQRDIHQRA  158 (196)
T ss_dssp             -TCTTCCHHHHHHT---CSEEEEEEETTSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHH
T ss_pred             -Hhhhhhccccccc---CCEEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCchhhhhHHHhHHHHHH
Confidence             1122   456666   899999999998622222333445443     589999999999987532110000111 111


Q ss_pred             HHHHHhcC--CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          179 QQLIRENY--PHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       179 ~~~~~~~~--~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      .+.+...+  ...++++++||++ .|++++|+.+.+.
T Consensus       159 ~~~~~~~~~~~~~~~~~e~Sa~~-~~v~~~f~~l~~~  194 (196)
T 3llu_A          159 NDDLADAGLEKLHLSFYLTSIYD-HSIFEAFSKVVQK  194 (196)
T ss_dssp             HHHHHHTTCTTSCEEEEEECTTS-THHHHHHHHHHHH
T ss_pred             HHHHHHhhhhcCCcceEEEEech-hhHHHHHHHHHHH
Confidence            22333322  2346899999999 9999999998764

>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}

Probab=99.89  E-value=5.9e-22  Score=146.36  Aligned_cols=162  Identities=23%  Similarity=0.241  Sum_probs=109.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE--eeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL--INHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~--~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|++|+|||||+++|++..+.  ....++++..  ...+.. +..+.+|||||.......    ...+.+...
T Consensus         6 ~~~~i~lvG~~gvGKStL~~~l~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~----~~~~~~~~~   79 (188)
T 2wjg_A            6 KSYEIALIGNPNVGKSTIFNALTGENVY--IGNWPGVTVEKKEGEFEYNGEKFKVVDLPGVYSLTAN----SIDEIIARD   79 (188)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHTTCEE--EEECTTSCCEEEEEEEEETTEEEEEEECCCCSCCSSS----SHHHHHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcc--ccCCCCeeccceEEEEEeCCcEEEEEECCCcCccccc----cHHHHHHHH
Confidence            4579999999999999999999996432  2333343332  233333 347899999997533211    122345555


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      +++. ..+|++++|+|+++..  ........+...+.|+++|+||+|+.......   ...+++.+.++      .++++
T Consensus        80 ~~~~-~~~~~~i~v~d~~~~~--~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~------~~~~~  147 (188)
T 2wjg_A           80 YIIN-EKPDLVVNIVDATALE--RNLYLTLQLMEMGANLLLALNKMDLAKSLGIE---IDVDKLEKILG------VKVVP  147 (188)
T ss_dssp             HHHH-HCCSEEEEEEEGGGHH--HHHHHHHHHHTTTCCEEEEEECHHHHHHTTCC---CCHHHHHHHHT------SCEEE
T ss_pred             HHhc-cCCCEEEEEecchhHH--HHHHHHHHHHhcCCCEEEEEEhhhccccccch---HHHHHHHHHhC------CCeEE
Confidence            6543 2279999999998522  11233344455789999999999987543222   23455555443      58999


Q ss_pred             eecCCCCChHHHHHHHHHHHhhh
Q 027757          195 TSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +||+++.|++++++++.+.+...
T Consensus       148 ~Sa~~~~~v~~l~~~i~~~~~~~  170 (188)
T 2wjg_A          148 LSAAKKMGIEELKKAISIAVKDK  170 (188)
T ss_dssp             CBGGGTBSHHHHHHHHHHHHTTC
T ss_pred             EEecCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999998877543

>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*

Probab=99.89  E-value=1.8e-22  Score=157.70  Aligned_cols=159  Identities=24%  Similarity=0.313  Sum_probs=112.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .++|+++|++|+|||||+|+|++..  ....+.+++|........  +..+.+|||||........    ..+.+...|+
T Consensus         3 ~~kI~lvG~~nvGKSTL~n~L~g~~--~~v~~~pg~tv~~~~~~~~~~~~l~l~DtpG~~~~~~~~----~~e~v~~~~~   76 (272)
T 3b1v_A            3 MTEIALIGNPNSGKTSLFNLITGHN--QRVGNWPGVTVERKSGLVKKNKDLEIQDLPGIYSMSPYS----PEAKVARDYL   76 (272)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHCCC--CCCCSSSCCCCSCEEEECTTCTTEEEEECCCCSCSSCSS----HHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCCcEEEEEEEEecCCeEEEEECCCcCccCCCC----hHHHHHHHHH
Confidence            5789999999999999999999964  345566676664433322  4579999999965332111    1245566676


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      .. ..+|++|+|+|+++..+  ......++.+.++|+++|+||+|+.......   ...+.+.+.++      ++++++|
T Consensus        77 ~~-~~~d~vi~V~D~t~~e~--~~~~~~~l~~~~~p~ilv~NK~Dl~~~~~~~---~~~~~l~~~lg------~~vi~~S  144 (272)
T 3b1v_A           77 LS-QRADSILNVVDATNLER--NLYLTTQLIETGIPVTIALNMIDVLDGQGKK---INVDKLSYHLG------VPVVATS  144 (272)
T ss_dssp             HT-TCCSEEEEEEEGGGHHH--HHHHHHHHHHTCSCEEEEEECHHHHHHTTCC---CCHHHHHHHHT------SCEEECB
T ss_pred             hc-CCCCEEEEEecCCchHh--HHHHHHHHHhcCCCEEEEEEChhhCCcCCcH---HHHHHHHHHcC------CCEEEEE
Confidence            54 34899999999987432  2334445556789999999999987543322   23455555553      6899999


Q ss_pred             cCCCCChHHHHHHHHHHHh
Q 027757          197 SVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~~  215 (219)
                      |++|.|++++++++.+.+.
T Consensus       145 A~~g~gi~el~~~i~~~~~  163 (272)
T 3b1v_A          145 ALKQTGVDQVVKKAAHTTT  163 (272)
T ss_dssp             TTTTBSHHHHHHHHHHSCT
T ss_pred             ccCCCCHHHHHHHHHHHHh
Confidence            9999999999999987553

>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}

Probab=99.89  E-value=6.9e-22  Score=154.62  Aligned_cols=160  Identities=23%  Similarity=0.288  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+|+|++..+  ...+.++++...  ..... +..+.++||||..........    +.+...|
T Consensus         3 ~~~i~lvG~~g~GKTTL~n~l~g~~~--~~~~~~~~t~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~----~~~~~~~   76 (271)
T 3k53_A            3 LKTVALVGNPNVGKTTIFNALTGLRQ--HVGNWPGVTVEKKEGIMEYREKEFLVVDLPGIYSLTAHSID----ELIARNF   76 (271)
T ss_dssp             CEEEEEEECSSSSHHHHHHHHHTTCE--EEEECTTSSCEEEEEEEEETTEEEEEEECCCCSCCCSSCHH----HHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCc--ccCCCCCeEEEeeEEEEEECCceEEEEeCCCccccccCCHH----HHHHHHh
Confidence            57999999999999999999999753  445555555443  22332 336899999997533222111    2344555


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCC-CcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      +.. ..+|++++|+|+++..  ........+...+ +|+++|+||+|+........   ..+.+.+.++      +++++
T Consensus        77 ~~~-~~~d~vi~v~D~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~---~~~~l~~~lg------~~~~~  144 (271)
T 3k53_A           77 ILD-GNADVIVDIVDSTCLM--RNLFLTLELFEMEVKNIILVLNKFDLLKKKGAKI---DIKKMRKELG------VPVIP  144 (271)
T ss_dssp             HHT-TCCSEEEEEEEGGGHH--HHHHHHHHHHHTTCCSEEEEEECHHHHHHHTCCC---CHHHHHHHHS------SCEEE
T ss_pred             hhc-cCCcEEEEEecCCcch--hhHHHHHHHHhcCCCCEEEEEEChhcCcccccHH---HHHHHHHHcC------CcEEE
Confidence            532 3389999999998752  2233344444556 99999999999876543333   2455555554      68999


Q ss_pred             eecCCCCChHHHHHHHHHHHhh
Q 027757          195 TSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +||++|.|++++++++.+.+..
T Consensus       145 ~Sa~~g~gi~~l~~~i~~~~~~  166 (271)
T 3k53_A          145 TNAKKGEGVEELKRMIALMAEG  166 (271)
T ss_dssp             CBGGGTBTHHHHHHHHHHHHHT
T ss_pred             EEeCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999987654

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.89  E-value=4.9e-22  Score=165.38  Aligned_cols=161  Identities=22%  Similarity=0.230  Sum_probs=107.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--E-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--L-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ++|+|+|.+|+|||||+|+|++.. .+.+.+.+++|++....  . .+..+.+|||||+..... ...+..+......++
T Consensus         2 ~~v~ivG~pnvGKStL~nrl~~~~-~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~-~~~~~~~~~~~~~~~   79 (439)
T 1mky_A            2 ATVLIVGRPNVGKSTLFNKLVKKK-KAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQ-DIISQKMKEVTLNMI   79 (439)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGG-GCCCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-CceecCCCCCccceeeEEEEECCeEEEEEECCCcccccc-chHHHHHHHHHHHHH
Confidence            689999999999999999999973 55677888888764322  2 344799999999753221 112334556666777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      +.   +|++|+|+|++++.+..+..+..++...++|+++|+||+|+....        ..+....+.. ++. .+++++|
T Consensus        80 ~~---ad~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~~~--------~~~~~~~~~~-lg~-~~~~~iS  146 (439)
T 1mky_A           80 RE---ADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLREF--------EREVKPELYS-LGF-GEPIPVS  146 (439)
T ss_dssp             TT---CSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHHH--------HHHTHHHHGG-GSS-CSCEECB
T ss_pred             Hh---CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcccc--------HHHHHHHHHh-cCC-CCEEEEe
Confidence            77   999999999999888777777788887889999999999975320        0111012211 111 2679999


Q ss_pred             cCCCCChHHHHHHHHHHHh
Q 027757          197 SVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~~~  215 (219)
                      |++|.|++++++++.+.+.
T Consensus       147 A~~g~gv~~L~~~i~~~l~  165 (439)
T 1mky_A          147 AEHNINLDTMLETIIKKLE  165 (439)
T ss_dssp             TTTTBSHHHHHHHHHHHHH
T ss_pred             ccCCCCHHHHHHHHHHhcc
Confidence            9999999999999987664

>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A

Probab=99.88  E-value=4.8e-22  Score=145.25  Aligned_cols=156  Identities=26%  Similarity=0.266  Sum_probs=102.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEecC-eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLVNK-SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~~-~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..+|+++|++|+|||||+|+|++.. .....+.++++.+.  .....++ .+.++||||..... ....+..+... ..+
T Consensus         4 ~~ki~ivG~~g~GKStLl~~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~-~~~~~~~~~~~-~~~   80 (172)
T 2gj8_A            4 GMKVVIAGRPNAGKSSLLNALAGRE-AAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREAS-DEVERIGIERA-WQE   80 (172)
T ss_dssp             CEEEEEEESTTSSHHHHHHHHHTSC-CSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCCS-SHHHHHHHHHH-HHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCCC-cceeeCCCCceeceeeEEEEECCeEEEEEECCCcccch-hHHHHHHHHHH-HHH
Confidence            4689999999999999999999863 33345555555432  2333333 68899999975321 11111111111 134


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      ++.   +|++++|+|++++.+.........+..   .++|+++|+||+|+.....  ...           ..  ...++
T Consensus        81 ~~~---ad~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~-----------~~--~~~~~  142 (172)
T 2gj8_A           81 IEQ---ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETL--GMS-----------EV--NGHAL  142 (172)
T ss_dssp             HHT---CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCC--EEE-----------EE--TTEEE
T ss_pred             HHh---CCEEEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCcchh--hhh-----------hc--cCCce
Confidence            555   899999999999877654433333322   4689999999999854210  000           00  12579


Q ss_pred             EEeecCCCCChHHHHHHHHHHHh
Q 027757          193 IMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++||+++.|+++++++|.+.+.
T Consensus       143 ~~~SA~~g~gv~~l~~~l~~~~~  165 (172)
T 2gj8_A          143 IRLSARTGEGVDVLRNHLKQSMG  165 (172)
T ss_dssp             EECCTTTCTTHHHHHHHHHHHC-
T ss_pred             EEEeCCCCCCHHHHHHHHHHHhh
Confidence            99999999999999999988654

>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}

Probab=99.88  E-value=4.5e-22  Score=165.47  Aligned_cols=159  Identities=21%  Similarity=0.279  Sum_probs=104.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|++......   +..+.+|||||+......  ....+......+
T Consensus         3 ~~~V~ivG~~nvGKStL~n~l~~~-~~~~v~~~~g~T~d~~~~~~~~~~~~~~l~DT~G~~~~~~~--~~~~~~~~~~~~   79 (436)
T 2hjg_A            3 KPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDIGDEP--FLAQIRQQAEIA   79 (436)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHEEE-ECC-----------CEEEECTTCSSCCEEEC---------C--HHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CceeecCCCCCccceEEEEEEECCceEEEEECCCCCCcchh--HHHHHHHHHHHH
Confidence            479999999999999999999997 45677888898877554433   347999999997532211  334556666777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      ++.   +|++|+|+|+.++.+..+..+..++...++|+++|+||+|+......      ..++.    . ++. .+++++
T Consensus        80 ~~~---ad~il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~~~~------~~~~~----~-lg~-~~~~~i  144 (436)
T 2hjg_A           80 MDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMRAN------IYDFY----S-LGF-GEPYPI  144 (436)
T ss_dssp             HHH---CSEEEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC-----C------CCSSG----G-GSS-CCCEEC
T ss_pred             HHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccchhh------HHHHH----H-cCC-CCeEEE
Confidence            777   89999999999998888877788888889999999999998753210      11111    1 111 268999


Q ss_pred             ecCCCCChHHHHHHHHHHHh
Q 027757          196 SSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ||++|.|++++++++.+.+.
T Consensus       145 SA~~g~gv~~L~~~i~~~l~  164 (436)
T 2hjg_A          145 SGTHGLGLGDLLDAVAEHFK  164 (436)
T ss_dssp             BTTTTBTHHHHHHHHHHTGG
T ss_pred             eCcCCCChHHHHHHHHHhcC
Confidence            99999999999999987664

>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8

Probab=99.88  E-value=1.1e-22  Score=163.40  Aligned_cols=187  Identities=21%  Similarity=0.234  Sum_probs=122.9

Q ss_pred             ccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe
Q 027757           13 YAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI   78 (219)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~   78 (219)
                      ..+.....+..|..+..+.++.+...              .++|+|+|.+|||||||+|+|++..  ......+.+|...
T Consensus       118 ~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~~--~~i~~~~ftTl~p  195 (342)
T 1lnz_A          118 RGGRGGRGNSRFATPANPAPQLSENGEPGKERYIVLELKVLADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVP  195 (342)
T ss_dssp             CCCCCCCCGGGSCBTTBSSCCCCCCCCCCCEEEEEEEEECCCCEEEESSTTSSHHHHHHHSEEEC--CEESSTTSSCCCC
T ss_pred             CCCCCccCccccccccccccccccCCCCcchhhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcCC--CccccCCccccCc
Confidence            44555677778877777776665544              3579999999999999999999863  3334455455433


Q ss_pred             e--EEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC---CCCcccH-HHHHHhcc--
Q 027757           79 N--HFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV---PPQKIDL-DCANWLGR--  148 (219)
Q Consensus        79 ~--~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~---~~~~~~~-~~~~~~~~--  148 (219)
                      .  .+..+  ..+.++||||+...      ...+..+...|++..+.+|++|+|+|+++   .....+. .....+..  
T Consensus       196 ~~g~v~~~~~~~~~l~DtPG~i~~------a~~~~~l~~~fl~~i~~~d~ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~  269 (342)
T 1lnz_A          196 NLGMVETDDGRSFVMADLPGLIEG------AHQGVGLGHQFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN  269 (342)
T ss_dssp             CEEEEECSSSCEEEEEEHHHHHHH------TTCTTTTHHHHHHHHHHCCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSC
T ss_pred             eEEEEEeCCCceEEEecCCCCccc------ccccchhHHHHHHHHHhccEEEEEEECCcccccChHHHHHHHHHHHHHhh
Confidence            2  23333  47999999996321      01111233344444445899999999987   3333322 12222322  


Q ss_pred             ---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          149 ---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       149 ---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                         .++|+++|+||+|+....      +..+++.+.    +....+++++||+++.|+++++++|.+.+...
T Consensus       270 ~~l~~~p~ilV~NK~Dl~~~~------e~~~~l~~~----l~~~~~v~~iSA~tg~gi~eL~~~l~~~l~~~  331 (342)
T 1lnz_A          270 LRLTERPQIIVANKMDMPEAA------ENLEAFKEK----LTDDYPVFPISAVTREGLRELLFEVANQLENT  331 (342)
T ss_dssp             SSTTTSCBCBEEECTTSTTHH------HHHHHHHHH----CCSCCCBCCCSSCCSSTTHHHHHHHHHHHTSC
T ss_pred             hhhcCCCEEEEEECccCCCCH------HHHHHHHHH----hhcCCCEEEEECCCCcCHHHHHHHHHHHHhhC
Confidence               479999999999987531      223333333    33226899999999999999999999887653

>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}

Probab=99.88  E-value=6.6e-22  Score=158.68  Aligned_cols=157  Identities=16%  Similarity=0.154  Sum_probs=105.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...++|+|+|.+|+|||||+++|++..+... .++.+..  ...... +..+.++||||..          .|..+...+
T Consensus       163 ~~~~kI~ivG~~~vGKSsLl~~l~~~~~~~~-~pT~~~~--~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~~~  229 (329)
T 3o47_A          163 KKEMRILMVGLDAAGKTTILYKLKLGEIVTT-IPTIGFN--VETVEYKNISFTVWDVGGQD----------KIRPLWRHY  229 (329)
T ss_dssp             CCSEEEEEEESTTSSHHHHHHHTCSSCCEEE-EEETTEE--EEEEEETTEEEEEEECC---------------CCSHHHH
T ss_pred             cCcceEEEECCCCccHHHHHHHHhCCCCCCc-ccccceE--EEEEecCcEEEEEEECCCCH----------hHHHHHHHH
Confidence            3457999999999999999999998754322 2222222  122222 3378999999932          233445666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~  188 (219)
                      ++.   +|++|+|+|++++.+.....  +...+..   .++|+++|+||+|+....       ..+++...+....  ..
T Consensus       230 ~~~---ad~vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~  299 (329)
T 3o47_A          230 FQN---TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRHR  299 (329)
T ss_dssp             HTT---EEEEEEEEETTCSSSHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTCTTCCSS
T ss_pred             hcc---CCEEEEEEECCchHHHHHHHHHHHHHHhhhccCCCeEEEEEECccCCccc-------CHHHHHHHhchhhhhcC
Confidence            766   89999999999877765431  2222222   489999999999997642       2344444443322  12


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .++++++||++|.|+++++++|.+.+..
T Consensus       300 ~~~~~~vSAk~g~gi~el~~~l~~~l~~  327 (329)
T 3o47_A          300 NWYIQATCATSGDGLYEGLDWLSNQLRN  327 (329)
T ss_dssp             CEEEEECBTTTTBTHHHHHHHHHHHHTC
T ss_pred             CCEEEEEECCCCcCHHHHHHHHHHHHHh
Confidence            4579999999999999999999987754

>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}

Probab=99.80  E-value=3.4e-24  Score=160.74  Aligned_cols=160  Identities=13%  Similarity=0.069  Sum_probs=103.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ....++|+++|.+|+|||||+++|++..+.....++.+..........+  ..+.+|||||..          .+..+..
T Consensus        27 ~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~l~i~Dt~G~~----------~~~~~~~   96 (204)
T 3th5_A           27 QGQAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQE----------DYDRLRP   96 (204)
Confidence            3567899999999999999999999875444333333322211111112  245689999842          3345556


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhccC--CCcEEEEEEcccccccccC----------CCchHhHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGRN--NIPLTFVFTKCDKMKVAKG----------RRPDENIKSFQ  179 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~~--~~p~iiv~nK~D~~~~~~~----------~~~~~~~~~~~  179 (219)
                      .+++.   +|++|+|+|++++.+.....  ....+...  ++|+++|+||+|+.+....          .+..++..++.
T Consensus        97 ~~~~~---~d~iilv~D~~~~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~  173 (204)
T 3th5_A           97 LSYPQ---TDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMA  173 (204)
Confidence            66666   89999999999877665532  22233332  7899999999999754211          11111122222


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +.++     ..+++++||++|.|+++++++|.+.
T Consensus       174 ~~~~-----~~~~~~vSA~~g~gi~~l~~~l~~~  202 (204)
T 3th5_A          174 KEIG-----AVKYLECSALTQRGLKTVFDEAIRA  202 (204)
Confidence            2211     1378999999999999999998764

>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}

Probab=99.87  E-value=6e-25  Score=164.27  Aligned_cols=159  Identities=18%  Similarity=0.215  Sum_probs=101.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+|+|++..+.....+..+.+.....+..++   .+.+|||||.....          .+..
T Consensus        31 ~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~----------~~~~  100 (199)
T 3l0i_B           31 DYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFR----------TITS  100 (199)
T ss_dssp             SEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCC----------CCSC
T ss_pred             CcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHH----------HHHH
Confidence            3468999999999999999999998765554444445445444444444   68999999954221          1123


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      .+++.   +|++|+|+|++++.+..... .+..+..   .++|+++|+||+|+.+...  +..+..+++.+.+.      
T Consensus       101 ~~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~~~--v~~~~~~~~~~~~~------  169 (199)
T 3l0i_B          101 SYYRG---AHGIIVVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTKKV--VDYTTAKEFADSLG------  169 (199)
T ss_dssp             C--CC---CSEEEECC-CCCSHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--CC--CCSCC-CHHHHTTT------
T ss_pred             HHhhc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcccc--CCHHHHHHHHHHcC------
Confidence            34444   89999999999876654321 1122222   4789999999999976432  22233344444332      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||+++.|+++++++|.+.+..
T Consensus       170 ~~~~~vSA~~g~gv~~l~~~l~~~l~~  196 (199)
T 3l0i_B          170 IPFLETSAKNATNVEQSFMTMAAEIKK  196 (199)
T ss_dssp             CCBCCCCC---HHHHHHHHHHTTTTTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence            689999999999999999999876654

>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*

Probab=99.87  E-value=5.1e-22  Score=165.99  Aligned_cols=167  Identities=20%  Similarity=0.258  Sum_probs=108.4

Q ss_pred             CCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhh
Q 027757           31 AKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMD  107 (219)
Q Consensus        31 ~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~  107 (219)
                      ...+.+...++|+|+|.+|+|||||+|+|++. ..+.+.+.+++|.+......   +..+.+|||||+..  .....+..
T Consensus        15 ~~~~~~m~~~~V~lvG~~nvGKSTL~n~l~~~-~~~~v~~~~g~t~~~~~~~~~~~~~~~~liDT~G~~~--~~~~~~~~   91 (456)
T 4dcu_A           15 VPRGSHMGKPVVAIVGRPNVGKSTIFNRIAGE-RISIVEDTPGVTRDRIYSSAEWLNYDFNLIDTGGIDI--GDEPFLAQ   91 (456)
T ss_dssp             --------CCEEEEECSSSSSHHHHHHHHEEE-EEC-----------CEEEECTTCSSCCEEECCCC--------CCHHH
T ss_pred             CCChhhcCCCEEEEECCCCCcHHHHHHHHhCC-CCcccCCCCCcceeEEEEEEEECCceEEEEECCCCCC--cchHHHHH
Confidence            34455566789999999999999999999997 45667788888877654443   34799999999762  22334666


Q ss_pred             HHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          108 WSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       108 ~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      +......+++.   +|++|+|+|+.++.+..+..+.+++...++|+++|+||+|+....      ....++   +...+ 
T Consensus        92 ~~~~~~~~~~~---ad~il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~~------~~~~e~---~~lg~-  158 (456)
T 4dcu_A           92 IRQQAEIAMDE---ADVIIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEMR------ANIYDF---YSLGF-  158 (456)
T ss_dssp             HHHHHHHHHHH---CSEEEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC---------------CCS---GGGSS-
T ss_pred             HHHHHHhhHhh---CCEEEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhhh------hhHHHH---HHcCC-
Confidence            77777888888   899999999999888888888899998999999999999986431      011111   11111 


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                        ..++++||++|.|++++++++.+...
T Consensus       159 --~~~~~iSA~~g~gv~~L~~~i~~~l~  184 (456)
T 4dcu_A          159 --GEPYPISGTHGLGLGDLLDAVAEHFK  184 (456)
T ss_dssp             --SSEEECCTTTCTTHHHHHHHHHTTGG
T ss_pred             --CceEEeecccccchHHHHHHHHhhcc
Confidence              25689999999999999999977553

>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*

Probab=99.87  E-value=1.9e-21  Score=144.61  Aligned_cols=156  Identities=14%  Similarity=0.116  Sum_probs=99.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc--cccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE--LALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~--~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      .+||+++|.+|+|||||+|+|++...  .....+ .+.+........++   .+.++||+|....       .  ..+..
T Consensus         6 ~~kv~lvG~~~vGKSsL~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~Dt~~~~~~-------~--~~~~~   75 (192)
T 2cjw_A            6 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDXEV-LGEDTYERTLMVDGESATIILLDMWENKGE-------N--EWLHD   75 (192)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHSCCC----GG-GCTTEEEEEEEETTEEEEEEEECCCCC-------------CTTGG
T ss_pred             eEEEEEECCCCCCHHHHHHHHhcCcCCcCccccc-cceeEEEEEEEECCeEEEEEEEEeccCcch-------h--hhHHH
Confidence            57999999999999999999997421  111111 22222222233333   4678999885321       1  12335


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .+++.   +|++++|+|+++..++.... ....+.    ..+.|+++|+||+|+...  +.+..++...+...    .+ 
T Consensus        76 ~~~~~---~~~~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~--r~v~~~~~~~~a~~----~~-  145 (192)
T 2cjw_A           76 HCMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRX--REVSVSEGRAXAVV----FD-  145 (192)
T ss_dssp             GHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHH----TT-
T ss_pred             hhccc---CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhcc--ccccHHHHHHHHHH----hC-
Confidence            56666   89999999999876654432 111121    247899999999998753  22333333332222    11 


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       ++++++||++|.|++++|+++.+.+.
T Consensus       146 -~~~~e~SA~~g~~v~~lf~~l~~~~~  171 (192)
T 2cjw_A          146 -XKFIETSAAVQHNVKELFEGIVRQVR  171 (192)
T ss_dssp             -CEEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -CceEEeccccCCCHHHHHHHHHHHHH
Confidence             57999999999999999999988653

>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1

Probab=99.87  E-value=3.7e-21  Score=160.09  Aligned_cols=172  Identities=27%  Similarity=0.355  Sum_probs=112.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEecC-eEEEEeCCCCCCCCCCc-chhhhHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVNK-SWYIVDLPGYGFAKAPD-VTRMDWSSFT  112 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~~-~~~liDtpg~~~~~~~~-~~~~~~~~~~  112 (219)
                      ...++|+|+|++|+|||||+|+|++. ....+.+.+++|.+..  .+..++ .+.++||||+....... ...+.|....
T Consensus       178 ~~~~kvaivG~~gvGKSTLln~l~g~-~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~  256 (439)
T 1mky_A          178 TDAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYR  256 (439)
T ss_dssp             CSCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHH
T ss_pred             ccCceEEEECCCCCCHHHHHHHHhCC-cccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHH
Confidence            34689999999999999999999997 4556777888776542  333343 68899999974221110 1111121111


Q ss_pred             -HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCC
Q 027757          113 -KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHH  189 (219)
Q Consensus       113 -~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  189 (219)
                       ..+++.   +|++++|+|++++.+..+..+...+...++|+++|+||+|+.+...     ...+++.+.+...+  ...
T Consensus       257 ~~~~i~~---ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~-----~~~~~~~~~~~~~~~~~~~  328 (439)
T 1mky_A          257 VVDSIEK---ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHRE-----KRYDEFTKLFREKLYFIDY  328 (439)
T ss_dssp             HHHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGG-----GCHHHHHHHHHHHCGGGTT
T ss_pred             HHHHHhh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCchh-----hHHHHHHHHHHHHhccCCC
Confidence             234455   7999999999998887776667777778999999999999875421     11222322222222  123


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      .+++++||++|.|++++++.+.+....+
T Consensus       329 ~~~~~~SA~~g~gv~~l~~~i~~~~~~~  356 (439)
T 1mky_A          329 SPLIFTSADKGWNIDRMIDAMNLAYASY  356 (439)
T ss_dssp             SCEEECBTTTTBSHHHHHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence            6899999999999999999998876654

>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*

Probab=99.86  E-value=3e-21  Score=142.45  Aligned_cols=159  Identities=16%  Similarity=0.186  Sum_probs=98.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC--cccccccCCCCeeEEeeEEE------ecCeEEEEeCCCCCCCCCCcchhhhHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK--KELALTSKKPGKTQLINHFL------VNKSWYIVDLPGYGFAKAPDVTRMDWSS  110 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~--~~~~~~~~~~~~t~~~~~~~------~~~~~~liDtpg~~~~~~~~~~~~~~~~  110 (219)
                      .+||+++|++|+|||||+++|++.  .+...+.++.+.........      ....+.+|||+|          ++.|..
T Consensus         2 ~~kv~ivG~~gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~~~~~~~~~~~i~Dt~G----------~~~~~~   71 (184)
T 2zej_A            2 RMKLMIVGNTGSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIRDKRKRDLVLNVWDFAG----------REEFYS   71 (184)
T ss_dssp             -CEEEEESCTTSSHHHHHHHHTCC-----------CSEEEEEEEC---------CEEEEEEECS----------HHHHHT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccccCCCCceEEEEEecCC----------CHHHHH
Confidence            479999999999999999999984  22333334444332211111      133688899988          344555


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh
Q 027757          111 FTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE  184 (219)
Q Consensus       111 ~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  184 (219)
                      +...+++.   +|++++|+|++++. +...  +..|+..     .+.|+++|+||+|+......   .....+..+.+..
T Consensus        72 ~~~~~~~~---~~~~i~v~d~~~~~~s~~~--~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~  143 (184)
T 2zej_A           72 THPHFMTQ---RALYLAVYDLSKGQAEVDA--MKPWLFNIKARASSSPVILVGTHLDVSDEKQR---KACMSKITKELLN  143 (184)
T ss_dssp             TSHHHHHH---SEEEEEEEEGGGCHHHHHT--HHHHHHHHHHHCTTCEEEEEEECGGGCCHHHH---HHHHHHHHHHTTT
T ss_pred             hhHHHccC---CcEEEEEEeCCcchhHHHH--HHHHHHHHHhhCCCCcEEEEEECCCcccchhh---HHHHHHHHHHHHH
Confidence            66777777   89999999998863 3322  2233332     47899999999998753110   0011122233322


Q ss_pred             cCCCCCC----eEEeecCCCC-ChHHHHHHHHHHHhhh
Q 027757          185 NYPHHPP----WIMTSSVTGL-GRDELLLHMSQLRNYW  217 (219)
Q Consensus       185 ~~~~~~~----~~~~Sa~~~~-~v~el~~~l~~~~~~~  217 (219)
                      ..  ..+    ++++||+++. |++++++.+.+.+...
T Consensus       144 ~~--~~~~~~~~~~~Sa~~~~~~~~~l~~~i~~~~~~~  179 (184)
T 2zej_A          144 KR--GFPAIRDYHFVNATEESDALAKLRKTIINESLNF  179 (184)
T ss_dssp             CT--TSCEEEEEEECCTTSCCHHHHHHHHHHHHHHHCC
T ss_pred             hc--CCcchhheEEEecccCchhHHHHHHHHHHHHhcc
Confidence            22  244    8999999997 9999999998776544

>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*

Probab=99.86  E-value=2.2e-21  Score=162.31  Aligned_cols=156  Identities=23%  Similarity=0.285  Sum_probs=110.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCC-CCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYG-FAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~-~~~~~~~~~~~~~~~~~~~  115 (219)
                      ++|+|+|.+|+|||||+|+|++. ..+...+.+++|.+..  .+.. +..+.++||||+. .... .....-. .....+
T Consensus       244 ~kV~ivG~pnvGKSSLln~L~~~-~~a~vs~~~gTT~d~~~~~i~~~g~~~~l~DTaG~~~~~~~-~ve~~gi-~~~~~~  320 (482)
T 1xzp_A          244 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETND-LVERLGI-ERTLQE  320 (482)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCT-TCCCCCH-HHHHHH
T ss_pred             CEEEEECcCCCcHHHHHHHHHCC-CCCccCCCCCeeeeeEEEEEecCCeEEEEEECCCccccchh-hHHHHHH-HHHHHH
Confidence            79999999999999999999997 4566777777777542  2223 3479999999976 3321 1111111 122345


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      +..   +|++|+|+|++++.+..+.++++.+  .++|+++|+||+|+.+.    ..   .+++.+.+    +...+++++
T Consensus       321 ~~~---aD~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~~----~~---~~~~~~~~----~~~~~~i~i  384 (482)
T 1xzp_A          321 IEK---ADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEK----IN---EEEIKNKL----GTDRHMVKI  384 (482)
T ss_dssp             HHH---CSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCC----CC---HHHHHHHH----TCSTTEEEE
T ss_pred             hhc---ccEEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECcccccc----cC---HHHHHHHh----cCCCcEEEE
Confidence            555   8999999999998877666666655  37899999999999642    11   12222221    123589999


Q ss_pred             ecCCCCChHHHHHHHHHHH
Q 027757          196 SSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       196 Sa~~~~~v~el~~~l~~~~  214 (219)
                      ||+++.|+++++++|.+.+
T Consensus       385 SAktg~Gi~eL~~~l~~~~  403 (482)
T 1xzp_A          385 SALKGEGLEKLEESIYRET  403 (482)
T ss_dssp             EGGGTCCHHHHHHHHHHHT
T ss_pred             ECCCCCCHHHHHHHHHHHH
Confidence            9999999999999998854

>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*

Probab=99.86  E-value=1.8e-21  Score=152.47  Aligned_cols=167  Identities=19%  Similarity=0.234  Sum_probs=93.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--------cCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcch
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALT--------SKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVT  104 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--------~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~  104 (219)
                      ++..++|+++|.+|+|||||+|+|++.......        .++.+.+........++   .+.++||||++.....   
T Consensus         5 ~g~~~~I~vvG~~g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~liDTpG~~d~~~~---   81 (274)
T 3t5d_A            5 SGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN---   81 (274)
T ss_dssp             --CEEEEEEEECTTSSHHHHHHHHSSSCC---------------CCCEEEEEEECC--CCEEEEEEECCCCSCCSCC---
T ss_pred             CccEEEEEEECCCCCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecCCeEEEEEEEECCCccccccc---
Confidence            355789999999999999999999887422221        11122222222222233   7899999998644221   


Q ss_pred             hhhHHHHH-------HHHhhc----------cCCccEEEEEEeCCC-CCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757          105 RMDWSSFT-------KGYFLN----------RESLVGVLLLIDASV-PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       105 ~~~~~~~~-------~~~~~~----------~~~~d~vi~v~d~~~-~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  166 (219)
                      ...|..+.       ..|+..          ...+|+++++++.+. +....+..+++++.. ++|+++|+||+|+....
T Consensus        82 ~~~~~~i~~~i~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~~  160 (274)
T 3t5d_A           82 SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTPE  160 (274)
T ss_dssp             TTTTHHHHHHHHHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCHH
Confidence            22233333       444443          122578899997765 666666777788877 89999999999987542


Q ss_pred             cCCCchHhHHHHHHHHHhcC-CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          167 KGRRPDENIKSFQQLIRENY-PHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                             +...+.+.+...+ ...++++.+|++++.|+++++++|.+.
T Consensus       161 -------e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~  201 (274)
T 3t5d_A          161 -------ECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDR  201 (274)
T ss_dssp             -------HHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHT
T ss_pred             -------HHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcC
Confidence                   2332222222111 123678999999999999999998764

>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*

Probab=99.86  E-value=3.4e-21  Score=160.98  Aligned_cols=157  Identities=23%  Similarity=0.215  Sum_probs=90.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec-CeEEEEeCCCCCCCCCCcchhhhHHHH-HHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSF-TKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~-~~~  114 (219)
                      .++|+|+|.+|+|||||+|+|++. .....++.+++|.+..  .+..+ ..+.+|||||+..... .     ++.+ ...
T Consensus       233 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~vs~~~gtT~d~~~~~i~~~g~~l~liDT~G~~~~~~-~-----ve~~gi~~  305 (476)
T 3gee_A          233 GVSTVIAGKPNAGKSTLLNTLLGQ-ERAIVSHMPGTTRDYIEECFIHDKTMFRLTDTAGLREAGE-E-----IEHEGIRR  305 (476)
T ss_dssp             CEEEEEECCTTSSHHHHHHHCC-------------------CEEEEETTEEEEEEC------------------------
T ss_pred             CCEEEEECCCCCCHHHHHHHHhCC-CCcccCCCCCceEEEEEEEEEECCeEEEEEECCCCCcchh-H-----HHHHHHHH
Confidence            468999999999999999999997 4566777788777653  23333 3799999999753211 0     0111 011


Q ss_pred             HhhccCCccEEEEEEeCCCCCCc----ccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQK----IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~----~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      .....+.+|++++|+|++++.+.    .....+..+.  ++|+++|+||+|+.....     ...+++.+. .  +   .
T Consensus       306 ~~~~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~~-----~~~~~l~~~-~--~---~  372 (476)
T 3gee_A          306 SRMKMAEADLILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANAD-----ALIRAIADG-T--G---T  372 (476)
T ss_dssp             --CCCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTTH-----HHHHHHHHH-H--T---S
T ss_pred             HHhhcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCccc-----hhHHHHHhc-C--C---C
Confidence            12233448999999999998877    3334444444  799999999999976421     111222221 1  1   5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||++|.|+++++++|.+.+.
T Consensus       373 ~~i~vSAktg~GI~eL~~~i~~~~~  397 (476)
T 3gee_A          373 EVIGISALNGDGIDTLKQHMGDLVK  397 (476)
T ss_dssp             CEEECBTTTTBSHHHHHHHHTHHHH
T ss_pred             ceEEEEECCCCCHHHHHHHHHHHHh
Confidence            8999999999999999999988775

>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*

Probab=99.86  E-value=9.4e-22  Score=157.70  Aligned_cols=159  Identities=13%  Similarity=0.049  Sum_probs=106.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|.+|+|||||++++++..+.....++.+..... ....++   .+.+|||||...          +..+...
T Consensus       154 ~~~~i~i~G~~~~GKssli~~~~~~~~~~~~~~t~~~~~~~-~~~~~~~~~~~~l~Dt~G~~~----------~~~~~~~  222 (332)
T 2wkq_A          154 ELIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSA-NVMVDGKPVNLGLWDTAGLED----------YDRLRPL  222 (332)
T ss_dssp             TCEEEEEEESTTSSHHHHHHHHHHSCCCCSCCCCSEEEEEE-EEEETTEEEEEEEEEECCCGG----------GTTTGGG
T ss_pred             ceeEEEEECCCCCChHHHHHHHHhCCCCcccCCcccceeEE-EEEECCEEEEEEEEeCCCchh----------hhHHHHH
Confidence            35899999999999999999999875544444444333322 222232   456999999532          2233445


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH--HHHHhcc--CCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD--CANWLGR--NNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ  180 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~~--~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~  180 (219)
                      +++.   +|++++|+|++++.+..+..  ....+..  .++|+++|+||+|+.+...          +.+..+...++.+
T Consensus       223 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~  299 (332)
T 2wkq_A          223 SYPQ---TDVFLICFSLVSPASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  299 (332)
T ss_dssp             GCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             hccC---CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhcccccchhhhccccccccccHHHHHHHHH
Confidence            5555   89999999999876654431  1222222  3899999999999865321          2233334444443


Q ss_pred             HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..+     ..+++++||++|.|+++++++|.+.+-
T Consensus       300 ~~~-----~~~~~~~Sa~~~~gi~~l~~~l~~~~~  329 (332)
T 2wkq_A          300 EIG-----AVKYLECSALTQRGLKTVFDEAIRAVL  329 (332)
T ss_dssp             HTT-----CSEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HcC-----CcEEEEecCCCCcCHHHHHHHHHHHHh
Confidence            322     137999999999999999999987653

>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}

Probab=99.86  E-value=7.2e-22  Score=162.59  Aligned_cols=163  Identities=23%  Similarity=0.297  Sum_probs=106.5

Q ss_pred             CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cC-eEEEEeCCCCCCCCCCcchhhhH
Q 027757           33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NK-SWYIVDLPGYGFAKAPDVTRMDW  108 (219)
Q Consensus        33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~-~~~liDtpg~~~~~~~~~~~~~~  108 (219)
                      ..+....++|+|+|.+|+|||||+|+|++.. .....+.+++|........   +. .+.+|||||+....  ..+...+
T Consensus        28 ~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~-~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~--~l~~~~~  104 (423)
T 3qq5_A           28 LPDAGFRRYIVVAGRRNVGKSSFMNALVGQN-VSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVG--ELGRLRV  104 (423)
T ss_dssp             C---CCCEEEEEECSCSTTTTTTTTSSCC--------------CCCCEEEEEETTTEEEEEEECSSTTCCC--TTCCCCH
T ss_pred             cCCCCCCEEEEEECCCCCCHHHHHHHHHcCC-CCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCccc--chhHHHH
Confidence            4455678999999999999999999999974 4445566666654332222   22 79999999976432  1122222


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +. ...++..   +|++|+|+|+  .........+.++...++|+++|+||+|+......        +..+.+...+  
T Consensus       105 ~~-~~~~l~~---aD~vllVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~~~--------~~~~~l~~~~--  168 (423)
T 3qq5_A          105 EK-ARRVFYR---ADCGILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEKAE--------ELKGLYESRY--  168 (423)
T ss_dssp             HH-HHHHHTS---CSEEEEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCCCT--------HHHHHSSCCT--
T ss_pred             HH-HHHHHhc---CCEEEEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCccHH--------HHHHHHHHHc--
Confidence            22 3345555   8999999999  34445566777888889999999999999865321        2233333322  


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .++++++||++|.|+++++++|.+.+
T Consensus       169 g~~v~~vSAktg~gI~eL~~~L~~~l  194 (423)
T 3qq5_A          169 EAKVLLVSALQKKGFDDIGKTISEIL  194 (423)
T ss_dssp             TCCCCCCSSCCTTSTTTHHHHHHHHS
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence            26899999999999999999998876

>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*

Probab=99.86  E-value=1.8e-21  Score=154.83  Aligned_cols=164  Identities=15%  Similarity=0.111  Sum_probs=104.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE----ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL----VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .+||+++|++|+|||||+++|++. ......+.+++|.......    .+..+.+|||||....     ....+......
T Consensus         3 ~~KI~lvG~~~vGKSSLi~~l~~~-~~~~~~~~~~~Ti~~~~~~~~~~~~~~l~i~Dt~G~~~~-----~~~~~~~~~~~   76 (307)
T 3r7w_A            3 GSKLLLMGRSGSGKSSMRSIIFSN-YSAFDTRRLGATIDVEHSHLRFLGNMTLNLWDCGGQDVF-----MENYFTKQKDH   76 (307)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHSC-CCTGGGGGCCCCCSEEEEEEEETTTEEEEEEEECCSHHH-----HHHHHTTTHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhC-CCCccccCcCCccceEEEEEEeCCceEEEEEECCCcHHH-----hhhhhhhHHHH
Confidence            479999999999999999999986 3344444444444333222    1237899999994210     01111345566


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHH-HHHhcc-----CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLGR-----NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~~-----~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      +++.   +|++|+|+|++++.+..+... ..++..     .++|+++|+||+|+...+.+........+..+.+...++.
T Consensus        77 ~~~~---ad~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~  153 (307)
T 3r7w_A           77 IFQM---VQVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGF  153 (307)
T ss_dssp             HHTT---CSEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             Hhcc---CCEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCC
Confidence            6666   899999999999877655422 233332     4799999999999976322110000111223333333332


Q ss_pred             -CCCeEEeecCCCCChHHHHHHHHH
Q 027757          189 -HPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       189 -~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                       .++++++||++ .|+.+++..+.+
T Consensus       154 ~~~~~~~tSa~~-~~i~e~~~~iv~  177 (307)
T 3r7w_A          154 PNLIGFPTSIWD-ESLYKAWSQIVC  177 (307)
T ss_dssp             CSCEEEECCTTS-SHHHHHHHHHHH
T ss_pred             CCeEEEEeeecC-ChHHHHHHHHHH
Confidence             37899999999 788888877654

>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X

Probab=99.86  E-value=8.5e-21  Score=150.43  Aligned_cols=161  Identities=22%  Similarity=0.237  Sum_probs=110.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .+|+|+|++|+|||||+|+|++.. ....++.+++|+..  ..... +.++.++||||+..   .... ..-..+.....
T Consensus         9 ~~VaIvG~~nvGKSTLln~L~g~~-~~i~s~~~~tTr~~~~gi~~~~~~~i~~iDTpG~~~---~~~~-~l~~~~~~~~~   83 (301)
T 1ega_A            9 GFIAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHM---EEKR-AINRLMNKAAS   83 (301)
T ss_dssp             EEEEEECSSSSSHHHHHHHHHTCS-EEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCH---HHHH-HHHHHHTCCTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC-ccccCCCCCcceeeEEEEEEECCeeEEEEECcCCCc---cchh-hHHHHHHHHHH
Confidence            479999999999999999999974 45556666666532  22222 33789999999741   0000 00001111223


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      ...+.+|++++|+|+++ .+..+..+.+.+...+.|+++++||+|+...      ...+.+..+.+...++. .+++++|
T Consensus        84 ~~l~~~D~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~~------~~~~~~~l~~l~~~~~~-~~~i~iS  155 (301)
T 1ega_A           84 SSIGDVELVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQE------KADLLPHLQFLASQMNF-LDIVPIS  155 (301)
T ss_dssp             SCCCCEEEEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCCC------HHHHHHHHHHHHTTSCC-SEEEECC
T ss_pred             HHHhcCCEEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCcc------HHHHHHHHHHHHHhcCc-CceEEEE
Confidence            34455899999999988 6666666666777778999999999998752      13344555555544332 3689999


Q ss_pred             cCCCCChHHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQL  213 (219)
Q Consensus       197 a~~~~~v~el~~~l~~~  213 (219)
                      |+++.|++++++++.+.
T Consensus       156 A~~g~~v~~l~~~i~~~  172 (301)
T 1ega_A          156 AETGLNVDTIAAIVRKH  172 (301)
T ss_dssp             TTTTTTHHHHHHHHHTT
T ss_pred             CCCCCCHHHHHHHHHHh
Confidence            99999999999998764

>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}

Probab=99.85  E-value=5e-21  Score=148.43  Aligned_cols=171  Identities=20%  Similarity=0.191  Sum_probs=101.4

Q ss_pred             CCCCCeEEEEcCC---------CCCHHHHHHHHhcCcccccccCCCCee--EE-----ee--------------EEEecC
Q 027757           36 KDDRPEFAILGRS---------NVGKSSLINALVRKKELALTSKKPGKT--QL-----IN--------------HFLVNK   85 (219)
Q Consensus        36 ~~~~~~v~i~G~~---------g~GKSslin~l~~~~~~~~~~~~~~~t--~~-----~~--------------~~~~~~   85 (219)
                      ....+||+++|.+         |+|||||+++|++..+.........++  .+     +.              ......
T Consensus        16 ~~~~~ki~lvG~~~~~~~~~~~~vGKSsLi~~l~~~~~~~~~~~~~~t~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~   95 (255)
T 3c5h_A           16 FQGTYNISVVGLSGTEKEKGQCGIGKSCLCNRFVRPSADEFHLDHTSVLSTSDFGGRVVNNDHFLYWGEVSRSLEDCVEC   95 (255)
T ss_dssp             CCSCEEEEEEESCCCTTTTTTCCCSHHHHHHHHHCCSTTTCCSCCCCEECHHHHTSTTTTTCSEEEEEEEC---------
T ss_pred             CCceeEEEEECCCccccccCCCCcCHHHHHHHHHhccCCccccccCCcccccccceeEeecccccccccccccccCCcEE
Confidence            3556899999999         999999999999842111111111111  00     00              000112


Q ss_pred             eEEEEe------CCCCCCCCCC-------cchhhhHHHHHHHHhhcc------------------CCccEEEEEEeCCCC
Q 027757           86 SWYIVD------LPGYGFAKAP-------DVTRMDWSSFTKGYFLNR------------------ESLVGVLLLIDASVP  134 (219)
Q Consensus        86 ~~~liD------tpg~~~~~~~-------~~~~~~~~~~~~~~~~~~------------------~~~d~vi~v~d~~~~  134 (219)
                      .+.+||      |||.......       ..+++.|..+...+++..                  ..+|++|+|+|++++
T Consensus        96 ~l~i~D~~~~~D~~~~~~~~~~~~~~~~~~~g~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ad~vilV~D~t~~  175 (255)
T 3c5h_A           96 KMHIVEQTEFIDDQTFQPHRSTALQPYIKRAAATKLASAEKLMYFCTDQLGLEQDFEQKQMPDGKLLVDGFLLGIDVSRG  175 (255)
T ss_dssp             CEEEEEECCCEETTTCSBTTGGGCCCHHHHHTCSEEECTTCBCCCCGGGTTCGGGSCCCBCGGGEEECCEEEEEEECBC-
T ss_pred             EEEEEEccccccccccccccccccccccccchhhhhhhhhhhhhhccccccccccccccccccccccCCEEEEEEECCCC
Confidence            455665      7776533221       445555555555555510                  027999999999987


Q ss_pred             --CCcccHH-HHHHh----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHH
Q 027757          135 --PQKIDLD-CANWL----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL  207 (219)
Q Consensus       135 --~~~~~~~-~~~~~----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~  207 (219)
                        .+..... .+..+    ...++|+++|+||+|+....       .+++..+.....  ..++++++||+++.|+++++
T Consensus       176 ~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~~-------~v~~~~~~~~~~--~~~~~~e~SAk~g~gv~elf  246 (255)
T 3c5h_A          176 MNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGVER-------YIRDAHTFALSK--KNLQVVETSARSNVNVDLAF  246 (255)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBCHH-------HHHHHHHHHHTS--SSCCEEECBTTTTBSHHHHH
T ss_pred             chhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccccH-------HHHHHHHHHHhc--CCCeEEEEECCCCCCHHHHH
Confidence              6654431 11111    22579999999999986532       222222222211  13689999999999999999


Q ss_pred             HHHHHHHh
Q 027757          208 LHMSQLRN  215 (219)
Q Consensus       208 ~~l~~~~~  215 (219)
                      ++|.+.+.
T Consensus       247 ~~l~~~l~  254 (255)
T 3c5h_A          247 STLVQLID  254 (255)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            99988664

>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*

Probab=99.85  E-value=2.3e-20  Score=153.72  Aligned_cols=162  Identities=15%  Similarity=0.147  Sum_probs=104.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeE---------------------Eee-EEEecCeEEEEeCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ---------------------LIN-HFLVNKSWYIVDLP   93 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~---------------------~~~-~~~~~~~~~liDtp   93 (219)
                      ....++|+++|.+|+|||||+|+|++.. ..........+.                     ... .......+.++|||
T Consensus         5 ~~~~~~I~vvG~~~~GKSTLi~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiDtP   83 (403)
T 3sjy_A            5 VQPEVNIGVVGHVDHGKTTLVQAITGIW-TSKKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDDEPKFLRRISFIDAP   83 (403)
T ss_dssp             CCCCCEEEEECSTTSSHHHHHHHHHSCC-CCSSSEEEEEEEEECTTSCTTTTEESSSCCGGGTCCSCCEEEEEEEEEECC
T ss_pred             cCCCcEEEEECCCCCCHHHHHHHHhCcc-cccccCccccceeeccccccccceecccccccccccccccccceEEEEECC
Confidence            3557899999999999999999999842 111000000000                     000 00112478999999


Q ss_pred             CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEcccccccccCCCc
Q 027757           94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAKGRRP  171 (219)
Q Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~~~~~  171 (219)
                      |+          +.|......++..   +|++|+|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+.+..   
T Consensus        84 Gh----------~~~~~~~~~~~~~---~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~~~---  147 (403)
T 3sjy_A           84 GH----------EVLMATMLSGAAL---MDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEA---  147 (403)
T ss_dssp             CC----------GGGHHHHHHHHTT---CSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH---
T ss_pred             Cc----------HHHHHHHHHHHhh---CCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchHHH---
Confidence            95          2334444455554   89999999999976 444444455444433 589999999999864211   


Q ss_pred             hHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          172 DENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .+..+++.+.+.......++++++||++|.|+++++++|.+.+
T Consensus       148 ~~~~~~i~~~l~~~~~~~~~ii~vSA~~g~gi~~L~~~l~~~l  190 (403)
T 3sjy_A          148 LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEYI  190 (403)
T ss_dssp             HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhhCCCCCEEEEEECCCCcChHHHHHHHHHhC
Confidence            1222333333333334467999999999999999999998754

>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}

Probab=99.85  E-value=1.3e-19  Score=146.93  Aligned_cols=164  Identities=22%  Similarity=0.232  Sum_probs=104.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...++|+++|.+|+|||||+|+|++..  ......+++|.....  ... +..+.++||||+...............+. 
T Consensus       165 ~~~~~v~lvG~~gvGKSTLin~L~~~~--~~~~~~~~~t~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~-  241 (357)
T 2e87_A          165 LEIPTVVIAGHPNVGKSTLLKALTTAK--PEIASYPFTTRGINVGQFEDGYFRYQIIDTPGLLDRPISERNEIEKQAIL-  241 (357)
T ss_dssp             SSSCEEEEECSTTSSHHHHHHHHCSSC--CEEECCTTCSSCEEEEEEEETTEEEEEEECTTTSSSCSTTSCHHHHHHHH-
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC--CccCCCCCeeeceeEEEEEecCceEEEEeCCCccccchhhhhHHHHHHHH-
Confidence            457899999999999999999999974  333344444443322  222 23689999999754322111111111121 


Q ss_pred             HHhhccCCccEEEEEEeCCCCC--Cccc-HHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPP--QKID-LDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~--~~~~-~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      .+..   .+|++++|+|++++.  +... ...+..+..  .+.|+++|+||+|+....       .+++..+.+..   .
T Consensus       242 ~~~~---~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~~-------~~~~~~~~~~~---~  308 (357)
T 2e87_A          242 ALRY---LGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADEE-------NIKRLEKFVKE---K  308 (357)
T ss_dssp             GGGG---TCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCHH-------HHHHHHHHHHH---T
T ss_pred             HHHh---cCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCChH-------HHHHHHHHHHh---c
Confidence            2222   379999999998765  2222 122222222  289999999999997642       22333332222   2


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .++++++||++|.|++++++++.+.+..
T Consensus       309 ~~~~~~iSA~~g~gi~~l~~~i~~~l~~  336 (357)
T 2e87_A          309 GLNPIKISALKGTGIDLVKEEIIKTLRP  336 (357)
T ss_dssp             TCCCEECBTTTTBTHHHHHHHHHHHHHH
T ss_pred             CCCeEEEeCCCCcCHHHHHHHHHHHHHH
Confidence            2689999999999999999999887654

>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.85  E-value=4.5e-20  Score=152.18  Aligned_cols=161  Identities=19%  Similarity=0.211  Sum_probs=102.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccc--ccCCCCeeEEeeE----E---------E-------------ecCeEE
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELAL--TSKKPGKTQLINH----F---------L-------------VNKSWY   88 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~--~~~~~~~t~~~~~----~---------~-------------~~~~~~   88 (219)
                      ...++|+++|..++|||||+++|++.. ...  .....+.|....+    .         .             ....+.
T Consensus         6 ~~~~~I~iiG~~d~GKSTLi~~L~g~~-~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~   84 (408)
T 1s0u_A            6 QAEVNIGMVGHVDHGKTSLTKALTGVW-TDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVS   84 (408)
T ss_dssp             CCCEEEEEESCTTSSHHHHHHHHHSCC-CCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEE
T ss_pred             CCceEEEEEcCCCCCHHHHHHHHhCCc-cccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEE
Confidence            456899999999999999999999752 211  1112222322111    0         0             014689


Q ss_pred             EEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEcccccccc
Q 027757           89 IVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMKVA  166 (219)
Q Consensus        89 liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~  166 (219)
                      +|||||+             +.+...+++....+|++|+|+|++++. ..+..+.+..+...+ .|+++++||+|+.+.+
T Consensus        85 iiDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~  151 (408)
T 1s0u_A           85 FVDSPGH-------------ETLMATMLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK  151 (408)
T ss_dssp             EEECSSH-------------HHHHHHHHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred             EEECCCH-------------HHHHHHHHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence            9999994             344566677777789999999999875 444455454444444 4799999999998653


Q ss_pred             cCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          167 KGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ...   +..++..+.+........+++++||++|.|+++|+++|.+.+
T Consensus       152 ~~~---~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~i  196 (408)
T 1s0u_A          152 QAE---ENYEQIKEFVKGTIAENAPIIPISAHHEANIDVLLKAIQDFI  196 (408)
T ss_dssp             TTT---THHHHHHHHHTTSTTTTCCEEEC------CHHHHHHHHHHHS
T ss_pred             HHH---HHHHHHHHHHhhcCCCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            221   233444444443334457999999999999999999998754

>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*

Probab=99.85  E-value=1.1e-20  Score=149.56  Aligned_cols=170  Identities=18%  Similarity=0.167  Sum_probs=110.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc----cccCCCC----------------------eeEE------------
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELA----LTSKKPG----------------------KTQL------------   77 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~----~~~~~~~----------------------~t~~------------   77 (219)
                      ....++|+|+|.+|+|||||+|+|++..+.+    ..++.++                      ++.+            
T Consensus        23 ~~~~~~i~vvG~~~~GKSSLln~l~g~~~~~~~~~~~t~~p~~~~~~~~~~~~~~~~~~~g~~~tt~~~~~~~~~~~~~~  102 (299)
T 2aka_B           23 DLDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDR  102 (299)
T ss_dssp             TCCCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHH
T ss_pred             CCCCCeEEEEeCCCCCHHHHHHHHHCCCcCCCCCCcccccceEEEEecCCcccchhhhcCCcccCCHHHHHHHHHHHHHH
Confidence            3457899999999999999999999985432    2222232                      1111            


Q ss_pred             ------------ee-EEEe--cCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEE-EEEeCCCCCCcc
Q 027757           78 ------------IN-HFLV--NKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVL-LLIDASVPPQKI  138 (219)
Q Consensus        78 ------------~~-~~~~--~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi-~v~d~~~~~~~~  138 (219)
                                  .. ....  ...+.+|||||+.....   .......+..+...|++.   ++.+| +|+|+++..+..
T Consensus       103 i~g~~~gi~~~~~~~~~~~~~~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~il~v~d~~~~~~~~  179 (299)
T 2aka_B          103 VTGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK---ENCLILAVSPANSDLANS  179 (299)
T ss_dssp             HCSSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTS---TTEEEEEEEESSSCGGGC
T ss_pred             hcccCCCccccceEEEEeCCCCCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcC---CCeEEEEEecCCcchhhh
Confidence                        00 0001  25799999999764221   122223567777788876   56555 799999876665


Q ss_pred             cH-HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-CCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          139 DL-DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-HHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       139 ~~-~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +. .+.+++...+.|+++|+||+|+.+...  .    ..+..+....... ...+++++||+++.|++++++++.+..
T Consensus       180 ~~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~--~----~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi~~l~~~l~~~~  251 (299)
T 2aka_B          180 DALKIAKEVDPQGQRTIGVITKLDLMDEGT--D----ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAER  251 (299)
T ss_dssp             HHHHHHHHHCTTCSSEEEEEECGGGSCTTC--C----CHHHHTTCSSCCTTCEEECCCCCCBCTTSCBCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCCCeEEEEEEccccCCCCc--h----HHHHHhCCcCcCCCCcEEEECCChhhccccccHHHHHHHHH
Confidence            53 467777778899999999999976421  1    1111111000111 124688999999999999999987743

>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}

Probab=99.84  E-value=9e-21  Score=157.90  Aligned_cols=157  Identities=24%  Similarity=0.237  Sum_probs=103.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHH-HHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSF-TKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~-~~~  114 (219)
                      .++|+|+|++|+|||||+|+|++. ........+++|.+..  .... +..+.+|||||+.....      .++.+ ...
T Consensus       224 ~~kV~ivG~~nvGKSSLln~L~~~-~~a~v~~~~gtT~d~~~~~i~~~g~~v~liDT~G~~~~~~------~ve~~gi~~  296 (462)
T 3geh_A          224 GLKVAIVGRPNVGKSSLLNAWSQS-DRAIVTDLPGTTRDVVESQLVVGGIPVQVLDTAGIRETSD------QVEKIGVER  296 (462)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH-HBSCCSCCTTCCHHHHHHEEEETTEEEEECC------------------------
T ss_pred             CCEEEEEcCCCCCHHHHHHHHhCC-CcccccCCCCeeEEEEEEEEEECCEEEEEEECCccccchh------HHHHHHHHH
Confidence            468999999999999999999996 4555666777776532  2233 34789999999743211      00111 111


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      .....+.+|++++|+|++++.+..+..+...+.  +.|+++|+||+|+.......           .+ ..+....++++
T Consensus       297 ~~~~~~~aD~vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~~~~~-----------~~-~~~~~~~~~i~  362 (462)
T 3geh_A          297 SRQAANTADLVLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEKQLIT-----------SL-EYPENITQIVH  362 (462)
T ss_dssp             --CCCCSCSEEEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCGGGST-----------TC-CCCTTCCCEEE
T ss_pred             HhhhhhcCCEEEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcchhhH-----------HH-HHhccCCcEEE
Confidence            222344589999999999988877666666555  47999999999997653221           00 01113368999


Q ss_pred             eecCCCCChHHHHHHHHHHHhh
Q 027757          195 TSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +||++|.|+++++++|.+.+..
T Consensus       363 iSAktg~Gi~eL~~~i~~~~~~  384 (462)
T 3geh_A          363 TAAAQKQGIDSLETAILEIVQT  384 (462)
T ss_dssp             EBTTTTBSHHHHHHHHHHHHTT
T ss_pred             EECCCCCCHHHHHHHHHHHHhc
Confidence            9999999999999999987654

>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*

Probab=99.84  E-value=1.2e-20  Score=158.40  Aligned_cols=163  Identities=23%  Similarity=0.250  Sum_probs=106.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccc-----ccccCCCCeeEEee--EEEec-CeEEEEeCCCCCCCCCCcchhhhH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKEL-----ALTSKKPGKTQLIN--HFLVN-KSWYIVDLPGYGFAKAPDVTRMDW  108 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~-----~~~~~~~~~t~~~~--~~~~~-~~~~liDtpg~~~~~~~~~~~~~~  108 (219)
                      ...++|+++|.+++|||||+++|++....     .......++|.+..  ....+ ..+.++||||+          +.|
T Consensus        17 m~~~~I~iiG~~d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~iiDtPGh----------~~~   86 (482)
T 1wb1_A           17 FKNINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH----------ADL   86 (482)
T ss_dssp             CEEEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH----------HHH
T ss_pred             CCCCEEEEECCCCChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEECCEEEEEEECCCh----------HHH
Confidence            34689999999999999999999986411     12223334444332  22223 47999999995          223


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc-CC
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN-YP  187 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~-~~  187 (219)
                      ......   ....+|++|+|+|++++...+..+.+..+...++|.++|+||+|+.+.+..   ....+++.+.+... ..
T Consensus        87 ~~~~~~---~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~  160 (482)
T 1wb1_A           87 IRAVVS---AADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI---KRTEMIMKSILQSTHNL  160 (482)
T ss_dssp             HHHHHH---HTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH---HHHHHHHHHHHHHSSSG
T ss_pred             HHHHHH---HHhhCCEEEEEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccchhH---HHHHHHHHHHHhhhccc
Confidence            333333   444499999999999987777777777777788999999999999863211   11122222223222 11


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...+++++||++|.|+++++++|.+.+.
T Consensus       161 ~~~~ii~vSA~~g~gI~~L~~~L~~~i~  188 (482)
T 1wb1_A          161 KNSSIIPISAKTGFGVDELKNLIITTLN  188 (482)
T ss_dssp             GGCCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             ccceEEEEECcCCCCHHHHHHHHHHhhc
Confidence            2478999999999999999999988653

>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}

Probab=99.84  E-value=2e-20  Score=143.68  Aligned_cols=175  Identities=14%  Similarity=0.187  Sum_probs=100.7

Q ss_pred             CCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEe-cCeEEEEeCCCCCCCCCCcchhhhHH
Q 027757           33 DCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWS  109 (219)
Q Consensus        33 ~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~  109 (219)
                      +.+....++|+|+|.+|+|||||+|+|++........+..+++...  ..... +..+.+|||||+.......  ....+
T Consensus        23 ~~~~~~~~~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~i~liDTpG~~~~~~~~--~~~~~  100 (239)
T 3lxx_A           23 QEPRNSQLRIVLVGKTGAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWKETELVVVDTPGIFDTEVPN--AETSK  100 (239)
T ss_dssp             -----CEEEEEEECCTTSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEETTEEEEEEECCSCC-----C--HHHHH
T ss_pred             CCCCCCceEEEEECCCCCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeCCceEEEEECCCccCCCCCH--HHHHH
Confidence            4445667899999999999999999999975433222222334332  22223 3479999999986443221  22233


Q ss_pred             HHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCch----HhHHHHHH
Q 027757          110 SFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPD----ENIKSFQQ  180 (219)
Q Consensus       110 ~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~----~~~~~~~~  180 (219)
                      .+...+....+.+|++|+|+|+++... .+...+.++.     ....|+++|+||+|+......+...    +.++++.+
T Consensus       101 ~~~~~~~~~~~~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~  179 (239)
T 3lxx_A          101 EIIRCILLTSPGPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMD  179 (239)
T ss_dssp             HHHHHHHHTTTCCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHH
T ss_pred             HHHHHHHhcCCCCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHH
Confidence            444555444455899999999986444 3344444443     2346999999999987653322111    22344444


Q ss_pred             HHHhcCCCCCCeEEeecCCC-----CChHHHHHHHHHHHhh
Q 027757          181 LIRENYPHHPPWIMTSSVTG-----LGRDELLLHMSQLRNY  216 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~-----~~v~el~~~l~~~~~~  216 (219)
                      .++      .+++.+++..+     .++.++++.+.+.++.
T Consensus       180 ~~~------~~~~~~~~~~~~~~~~~~v~~ll~~i~~~~~~  214 (239)
T 3lxx_A          180 IFG------DRYCALNNKATGAEQEAQRAQLLGLIQRVVRE  214 (239)
T ss_dssp             HHS------SSEEECCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HcC------CEEEEEECCCCccccHHHHHHHHHHHHHHHHH
Confidence            333      36777777654     6899999988876643

>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A

Probab=99.84  E-value=8.5e-21  Score=147.49  Aligned_cols=173  Identities=16%  Similarity=0.062  Sum_probs=103.3

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-eeEEe--eEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPG-KTQLI--NHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-~t~~~--~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      ....++|+|+|.+|+|||||+|+|++.. .......+. +|...  .... .+..+.+|||||+.......  ......+
T Consensus        19 ~~~~~~I~lvG~~g~GKStl~n~l~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~--~~~~~~i   95 (260)
T 2xtp_A           19 SRSELRIILVGKTGTGKSAAGNSILRKQ-AFESKLGSQTLTKTCSKSQGSWGNREIVIIDTPDMFSWKDHC--EALYKEV   95 (260)
T ss_dssp             --CCEEEEEEECTTSCHHHHHHHHHTSC-CSCCCTTSCCCCCSCEEEEEEETTEEEEEEECCGGGGSSCCC--HHHHHHH
T ss_pred             CCCceEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCceeeeeEEEEEEeCCCEEEEEECcCCCCCCCCH--HHHHHHH
Confidence            3456899999999999999999999874 222221121 33322  2222 34479999999976432211  1111222


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC-----CCcEEEEEE-cccccccccCCCch-------HhHHHH
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN-----NIPLTFVFT-KCDKMKVAKGRRPD-------ENIKSF  178 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n-K~D~~~~~~~~~~~-------~~~~~~  178 (219)
                      ........+.+|++|+|+|+++ ....+.....++.+.     ..|.++|+| |+|+....   ...       ..+..+
T Consensus        96 ~~~~~~~~~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~~~---~~~~i~~~~~~~~~~~  171 (260)
T 2xtp_A           96 QRCYLLSAPGPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNGGS---LMDYMHDSDNKALSKL  171 (260)
T ss_dssp             HHHHHHHTTCCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTTCC---HHHHHHHCCCHHHHHH
T ss_pred             HHHHHhcCCCCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCCcc---HHHHHHhcchHHHHHH
Confidence            3332223344899999999986 344444455555543     568888888 99997421   000       112223


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+.+...+.. ...+++||+++.|+++++++|.+.+..
T Consensus       172 ~~~~~~~~~~-~~~~~~SA~~~~gv~~l~~~i~~~~~~  208 (260)
T 2xtp_A          172 VAACGGRICA-FNNRAEGSNQDDQVKELMDCIEDLLME  208 (260)
T ss_dssp             HHHTTTCEEE-CCTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCeEEE-ecCcccccccHHHHHHHHHHHHHHHHh
Confidence            3333321110 111789999999999999999987754

>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*

Probab=99.84  E-value=5.3e-20  Score=137.35  Aligned_cols=156  Identities=21%  Similarity=0.241  Sum_probs=105.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .++|+++|++|+|||||+++|++..+.....++.+.......+..++   .+.++||||...          +..+...+
T Consensus         5 ~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~----------~~~~~~~~   74 (199)
T 2f9l_A            5 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQER----------YRRITSAY   74 (199)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGG----------TTCCCHHH
T ss_pred             eEEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchh----------hhhhhHHH
Confidence            57999999999999999999999865555556655555544555544   467899999432          12223445


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +..   +|++++|+|+.+..+..... ....+.   ..+.|+++|+||+|+....  .+.......+....      .+.
T Consensus        75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~--~~~~~~a~~l~~~~------~~~  143 (199)
T 2f9l_A           75 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPTDEARAFAEKN------NLS  143 (199)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCHHHHHHHHHHT------TCE
T ss_pred             Hhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccccc--CcCHHHHHHHHHHc------CCe
Confidence            555   79999999999865544321 112121   2578999999999997542  22223333333321      257


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++|++++.|+++++++|.+.+.
T Consensus       144 ~~d~Sal~~~~i~~l~~~l~~~~~  167 (199)
T 2f9l_A          144 FIETSALDSTNVEEAFKNILTEIY  167 (199)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHH
Confidence            899999999999999999988664

>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*

Probab=99.84  E-value=3.2e-20  Score=153.16  Aligned_cols=162  Identities=18%  Similarity=0.223  Sum_probs=105.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-cccccCCCCeeEEee----EEE----------------------ecCeEEE
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE-LALTSKKPGKTQLIN----HFL----------------------VNKSWYI   89 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~----~~~----------------------~~~~~~l   89 (219)
                      ...++|+++|..++|||||+++|++... ........+.|....    .+.                      ....+.+
T Consensus         8 ~~~~~I~iiG~~~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~i   87 (410)
T 1kk1_A            8 QAEVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSF   87 (410)
T ss_dssp             SEEEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEE
T ss_pred             CCccEEEEECCCCCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEE
Confidence            4467999999999999999999997521 111111222222111    110                      0146899


Q ss_pred             EeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCC-CcEEEEEEccccccccc
Q 027757           90 VDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNN-IPLTFVFTKCDKMKVAK  167 (219)
Q Consensus        90 iDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~-~p~iiv~nK~D~~~~~~  167 (219)
                      |||||+             +.+...+++....+|++|+|+|++++. ..+..+.+..+...+ .|+++|+||+|+.+.+.
T Consensus        88 iDtPGh-------------~~f~~~~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~~  154 (410)
T 1kk1_A           88 IDAPGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEK  154 (410)
T ss_dssp             EECSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHH
T ss_pred             EECCCh-------------HHHHHHHHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHHH
Confidence            999995             234456666666689999999999875 444455444444333 57999999999976421


Q ss_pred             CCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          168 GRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .   .+..+++.+.+........+++++||+++.|+++|+++|.+.+
T Consensus       155 ~---~~~~~~i~~~l~~~~~~~~~~i~vSA~~g~gi~~L~~~l~~~~  198 (410)
T 1kk1_A          155 A---LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDFI  198 (410)
T ss_dssp             H---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHHS
T ss_pred             H---HHHHHHHHHHHHhcCcCCCeEEEeeCCCCCCHHHHHHHHHHhC
Confidence            0   1223333333333333457999999999999999999998754

>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}

Probab=99.83  E-value=9.9e-20  Score=151.25  Aligned_cols=157  Identities=17%  Similarity=0.172  Sum_probs=101.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcc-----------------------------cccccCCCCeeEEeeEEE---e
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKE-----------------------------LALTSKKPGKTQLINHFL---V   83 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~~---~   83 (219)
                      ....++|+++|.+++|||||+++|++..-                             ........+.|.+.....   .
T Consensus        14 ~k~~~~i~iiG~~d~GKSTL~~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTid~~~~~~~~~   93 (439)
T 3j2k_7           14 KKEHVNVVFIGHVDAGKSTIGGQIMYLTGMVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERDKGKTVEVGRAYFETE   93 (439)
T ss_pred             CCceeEEEEEeCCCCCHHHHHHHHHHHcCCCchHHHHHHHHHHHhccccchhhhhhhccchhHhhcCceEEEeEEEEecC
Confidence            34568999999999999999999965410                             001112245555543332   2


Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------cccHHHHHHhccCCCc-EEE
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KIDLDCANWLGRNNIP-LTF  155 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~~p-~ii  155 (219)
                      +..+.++||||+.          .|......++..   +|++|+|+|++++..       .+..+.+..+...++| +++
T Consensus        94 ~~~~~iiDTPGh~----------~f~~~~~~~~~~---aD~~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~v~~iIv  160 (439)
T 3j2k_7           94 KKHFTILDAPGHK----------SFVPNMIGGASQ---ADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAGVKHLIV  160 (439)
T ss_pred             CeEEEEEECCChH----------HHHHHHHhhHhh---CCEEEEEEECCCCccccccCCCchHHHHHHHHHHcCCCeEEE
Confidence            3479999999952          233444444444   899999999998754       3455666666667788 999


Q ss_pred             EEEcccccccccCCCchHhHHHHHHHHHh---cCC----CCCCeEEeecCCCCChHHHHH
Q 027757          156 VFTKCDKMKVAKGRRPDENIKSFQQLIRE---NYP----HHPPWIMTSSVTGLGRDELLL  208 (219)
Q Consensus       156 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~---~~~----~~~~~~~~Sa~~~~~v~el~~  208 (219)
                      |+||+|+...+.   .....++..+.+..   .++    ..++++++||++|.|++++.+
T Consensus       161 viNK~Dl~~~~~---~~~~~~~i~~~~~~~l~~~g~~~~~~~~~i~iSA~~G~ni~~l~~  217 (439)
T 3j2k_7          161 LINKMDDPTVNW---SNERYEECKEKLVPFLKKVGFNPKKDIHFMPCSGLTGANLKEQSD  217 (439)
T ss_pred             EeecCCCcccch---HHHHHHHHHHHHHHHHHHhcccccCCeeEEEeeccCCcccccccc
Confidence            999999864211   01122222222211   111    246899999999999999554

>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}

Probab=99.82  E-value=9.5e-22  Score=165.86  Aligned_cols=161  Identities=21%  Similarity=0.328  Sum_probs=112.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE----ecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL----VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~----~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ..++|+++|.+|+|||||+++|.+..+...  ..+++|.+...+.    .+..+.+|||||+.....          +..
T Consensus         3 r~pkV~IvG~~~vGKTSLl~~L~~~~~~~~--~~~giT~~i~~~~v~~~~g~~i~~iDTPGhe~f~~----------~~~   70 (537)
T 3izy_P            3 RSPVVTIMGHVDHGKTTLLDKLRKTQVAAM--EAGGITQHIGAFLVSLPSGEKITFLDTPGHAAFSA----------MRA   70 (537)
T ss_dssp             CCCBCEEEESTTTTHHHHHHHHHHHHHHHS--SSCCBCCCTTSCCBCSSCSSCCBCEECSSSCCTTT----------SBB
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCcccc--cCCceeEEEeEEEEEeCCCCEEEEEECCChHHHHH----------HHH
Confidence            368999999999999999999998743322  3445555443322    233789999999643211          111


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI  193 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (219)
                      .   ....+|++|+|+|++++...+..+.+..+...++|+++|+||+|+.+...... ...+... ......++..++++
T Consensus        71 ~---~~~~aD~vILVVDa~dg~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~~~~v-~~~l~~~-~~~~e~~~~~~~iv  145 (537)
T 3izy_P           71 R---GTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIVLAINKCDKAEADPEKV-KKELLAY-DVVCEDYGGDVQAV  145 (537)
T ss_dssp             S---SSBSBSSCEEECBSSSCCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTSCCSS-SSHHHHT-TSCCCCSSSSEEEC
T ss_pred             H---HHccCCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEecccccccchHHH-HHHHHhh-hhhHHhcCCCceEE
Confidence            2   23348999999999999888888888888888999999999999975432211 1222111 00111223346899


Q ss_pred             EeecCCCCChHHHHHHHHHHHh
Q 027757          194 MTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++||++|.|++++++++...+.
T Consensus       146 ~vSAktG~GI~eLle~I~~l~~  167 (537)
T 3izy_P          146 HVSALTGENMMALAEATIALAE  167 (537)
T ss_dssp             CCCSSSSCSSHHHHHHHHHHHT
T ss_pred             EEECCCCCCchhHHHHHHHhhh
Confidence            9999999999999999988764

>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}

Probab=99.81  E-value=1.4e-20  Score=160.33  Aligned_cols=158  Identities=15%  Similarity=0.138  Sum_probs=95.7

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee------EE--Ee---cCeEEEEeCCCCCCCCCCcch
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN------HF--LV---NKSWYIVDLPGYGFAKAPDVT  104 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~------~~--~~---~~~~~liDtpg~~~~~~~~~~  104 (219)
                      ....+||+++|.+|+|||||+|+|++..+.....++.+.+....      .+  ..   ...+.++||||...       
T Consensus        38 ~~~~~kV~lvG~~~vGKSSLl~~l~~~~~~~~~~~t~g~~~~~~~~~~~~~v~~~~~~~~~~~~i~Dt~G~e~-------  110 (535)
T 3dpu_A           38 HLQEIKVHLIGDGMAGKTSLLKQLIGETFDPKESQTHGLNVVTKQAPNIKGLENDDELKECLFHFWDFGGQEI-------  110 (535)
T ss_dssp             CCCEEEEEEESSSCSSHHHHHHHHHC-----------CCCEEEEEGGGSGGGTTCSTTTTCEEEEECCCSCCT-------
T ss_pred             cccceEEEEECCCCCCHHHHHHHHhcCCCCCCCCCccceEEEEeccccccceeecCCCceEEEEEEECCcHHH-------
Confidence            35578999999999999999999999865555555555433211      01  11   34799999999432       


Q ss_pred             hhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHH
Q 027757          105 RMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI  182 (219)
Q Consensus       105 ~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~  182 (219)
                         +..+...+++.   +|++|+|+|+++....  ......+..  .+.|+++|+||+|+....  .+..+..++....+
T Consensus       111 ---~~~~~~~~l~~---~d~ii~V~D~s~~~~~--~~~~~~l~~~~~~~pvilV~NK~Dl~~~~--~v~~~~~~~~~~~~  180 (535)
T 3dpu_A          111 ---MHASHQFFMTR---SSVYMLLLDSRTDSNK--HYWLRHIEKYGGKSPVIVVMNKIDENPSY--NIEQKKINERFPAI  180 (535)
T ss_dssp             ---TTTTCHHHHHS---SEEEEEEECGGGGGGH--HHHHHHHHHHSSSCCEEEEECCTTTCTTC--CCCHHHHHHHCGGG
T ss_pred             ---HHHHHHHHccC---CcEEEEEEeCCCchhH--HHHHHHHHHhCCCCCEEEEEECCCccccc--ccCHHHHHHHHHhc
Confidence               22334556666   8999999999865221  233333333  469999999999997542  22223333322221


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                            ..+++++||++|.|++++++++.+.+..
T Consensus       181 ------~~~~~~vSA~~g~gi~eL~~~l~~~~~~  208 (535)
T 3dpu_A          181 ------ENRFHRISCKNGDGVESIAKSLKSAVLH  208 (535)
T ss_dssp             ------TTCEEECCC-----CTTHHHHHHHHHTC
T ss_pred             ------CCceEEEecCcccCHHHHHHHHHHHHhc
Confidence                  2579999999999999999999887654

>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*

Probab=99.81  E-value=3.5e-19  Score=132.16  Aligned_cols=156  Identities=20%  Similarity=0.219  Sum_probs=106.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+|+|++|||||||+++|++..+.....++.+..........++   .+.++|++|....          ..+...
T Consensus        28 ~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~----------~~~~~~   97 (191)
T 1oix_A           28 YLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERY----------RAITSA   97 (191)
T ss_dssp             EEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSS----------SCCCHH
T ss_pred             cceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcch----------hhhhHH
Confidence            357999999999999999999999865556666666655555555554   3557999996422          112244


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +++.   ++++++|+|..+..+..... ....+   ...+.|+++++||+|+....  .+.......+....      .+
T Consensus        98 ~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~~~--~~~~~~a~~l~~~~------~~  166 (191)
T 1oix_A           98 YYRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPTDEARAFAEKN------GL  166 (191)
T ss_dssp             HHTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGGC--CSCHHHHHHHHHHT------TC
T ss_pred             Hhhc---CCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccccc--ccCHHHHHHHHHHc------CC
Confidence            5555   78999999998765543322 11212   23578999999999997542  22233333333321      25


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .++++|++++.|+++++++|.+.+
T Consensus       167 ~~ld~Sald~~~v~~l~~~l~~~i  190 (191)
T 1oix_A          167 SFIETSALDSTNVEAAFQTILTEI  190 (191)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHh
Confidence            789999999999999999998753

>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A

Probab=99.81  E-value=9.9e-19  Score=141.71  Aligned_cols=168  Identities=18%  Similarity=0.151  Sum_probs=99.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEec-CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLVN-KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~~-~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ...+.|+|+|++|+|||||+|+|++..  ....+.+++|.+.  .....+ ..+.++||||+... .+....+.|.....
T Consensus       177 ~~~~~V~lvG~~naGKSTLln~L~~~~--~~~~~~~~~T~d~~~~~i~~~g~~v~l~DT~G~i~~-lp~~lve~f~~tl~  253 (364)
T 2qtf_A          177 NNIPSIGIVGYTNSGKTSLFNSLTGLT--QKVDTKLFTTMSPKRYAIPINNRKIMLVDTVGFIRG-IPPQIVDAFFVTLS  253 (364)
T ss_dssp             --CCEEEEECBTTSSHHHHHHHHHCC-------------CCSCEEEEEETTEEEEEEECCCBCSS-CCGGGHHHHHHHHH
T ss_pred             cCCcEEEEECCCCCCHHHHHHHHHCCC--ccccCCcccccCCEEEEEEECCEEEEEEeCCCchhc-CCHHHHHHHHHHHH
Confidence            345569999999999999999999974  2344445555433  233333 46889999996422 11222233444433


Q ss_pred             HHhhccCCccEEEEEEeCCCCC--CcccH----HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC-
Q 027757          114 GYFLNRESLVGVLLLIDASVPP--QKIDL----DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY-  186 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~--~~~~~----~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~-  186 (219)
                       .+..   +|++++|+|++++.  .....    +.+..+...+.|+++|+||+|+....     ..........+...+ 
T Consensus       254 -~~~~---aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~-----~~~~~~~~~~l~~~l~  324 (364)
T 2qtf_A          254 -EAKY---SDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGD-----LYKKLDLVEKLSKELY  324 (364)
T ss_dssp             -GGGG---SSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSC-----HHHHHHHHHHHHHHHC
T ss_pred             -HHHh---CCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCch-----HHHHHHHHHHHHHHhc
Confidence             2333   89999999998764  22111    22333333678999999999987532     111111111111111 


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ...++++++||+++.|+++++++|.+.+..
T Consensus       325 ~~~~~~~~~SA~~g~gi~~L~~~I~~~l~~  354 (364)
T 2qtf_A          325 SPIFDVIPISALKRTNLELLRDKIYQLATQ  354 (364)
T ss_dssp             SCEEEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCcEEEEECCCCcCHHHHHHHHHHHhcc
Confidence            122468999999999999999999887654

>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*

Probab=99.81  E-value=4e-19  Score=151.93  Aligned_cols=156  Identities=19%  Similarity=0.195  Sum_probs=100.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-c------ccc------cCCCCeeEEeeEE---Ee-----cCeEEEEeCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE-L------ALT------SKKPGKTQLINHF---LV-----NKSWYIVDLPGYG   96 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~-~------~~~------~~~~~~t~~~~~~---~~-----~~~~~liDtpg~~   96 (219)
                      ...+|+|+|..++|||||+++|+.... .      ..+      ....+.|......   +.     ...+.+|||||+.
T Consensus         3 ~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGiTi~~~~~~~~~~~~~g~~~~l~liDTPGh~   82 (599)
T 3cb4_D            3 NIRNFSIIAHIDHGKSTLSDRIIQICGGLSDREMEAQVLDSMDLERERGITIKAQSVTLDYKASDGETYQLNFIDTPGHV   82 (599)
T ss_dssp             TEEEEEEECCC----CCHHHHHHHHTTC--------------------------CEEEEEEECTTSCEEEEEEEECCCCG
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHhcCCcccccccccccccchhhhcccceeeeeEEEEEEecCCCCeEEEEEEECCCch
Confidence            356899999999999999999986310 0      001      1123333322111   11     2368899999963


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHH
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIK  176 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~  176 (219)
                                .|......+++.   +|++|+|+|++++.+.+....+..+...++|+++|+||+|+....        .+
T Consensus        83 ----------dF~~ev~~~l~~---aD~aILVVDa~~gv~~qt~~~~~~~~~~~ipiIvViNKiDl~~a~--------~~  141 (599)
T 3cb4_D           83 ----------DFSYEVSRSLAA---CEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKIDLPAAD--------PE  141 (599)
T ss_dssp             ----------GGHHHHHHHHHH---CSEEEEEEETTTCCCTHHHHHHHHHHHTTCEEEEEEECTTSTTCC--------HH
T ss_pred             ----------HHHHHHHHHHHH---CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEeeeccCccccc--------HH
Confidence                      233445556666   899999999999888877776766667899999999999997531        22


Q ss_pred             HHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          177 SFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       177 ~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +..+.+...++. ..+++++||++|.|++++++++.+.+
T Consensus       142 ~v~~ei~~~lg~~~~~vi~vSAktg~GI~~Ll~~I~~~l  180 (599)
T 3cb4_D          142 RVAEEIEDIVGIDATDAVRCSAKTGVGVQDVLERLVRDI  180 (599)
T ss_dssp             HHHHHHHHHTCCCCTTCEEECTTTCTTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhCCCcceEEEeecccCCCchhHHHHHhhcC
Confidence            223333333332 23689999999999999999998764

>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*

Probab=99.81  E-value=3.5e-19  Score=152.38  Aligned_cols=163  Identities=20%  Similarity=0.231  Sum_probs=106.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-------------c--------CeEEEEeCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-------------N--------KSWYIVDLPGYG   96 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-------------~--------~~~~liDtpg~~   96 (219)
                      ..++|+|+|.+++|||||+++|++.. .....+ .+.|.++.....             .        ..+.+|||||+.
T Consensus         4 r~~~V~IvGh~d~GKTTLl~~L~~~~-v~~~e~-ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe   81 (594)
T 1g7s_A            4 RSPIVSVLGHVDHGKTTLLDHIRGSA-VASREA-GGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHE   81 (594)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHHH-HSCC-----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTS
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhccc-CccccC-CceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcH
Confidence            36899999999999999999999863 221111 122222111111             0        148999999975


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCC-------
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGR-------  169 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~-------  169 (219)
                      ......          .   +....+|++|+|+|++++...+..+.+.++...++|+++++||+|+.......       
T Consensus        82 ~F~~~~----------~---r~~~~aD~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~~~~~~~~~~~~e  148 (594)
T 1g7s_A           82 AFTTLR----------K---RGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFME  148 (594)
T ss_dssp             CCTTSB----------C---SSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHH
T ss_pred             HHHHHH----------H---HHHhhCCEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEecccccccccccccCCchHH
Confidence            332111          1   22344899999999999877777778888888899999999999997421110       


Q ss_pred             ----Cch---Hh----HHHHHHHHHhcC------------CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          170 ----RPD---EN----IKSFQQLIRENY------------PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       170 ----~~~---~~----~~~~~~~~~~~~------------~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                          ...   +.    +.+....+...+            ....+++++||++|.|+++++++|.....
T Consensus       149 ~sa~~~~~v~~~~~e~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~  217 (594)
T 1g7s_A          149 TFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQ  217 (594)
T ss_dssp             HHTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcc
Confidence                000   11    112222332211            23358999999999999999999988664

>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*

Probab=99.80  E-value=8.3e-19  Score=153.00  Aligned_cols=168  Identities=19%  Similarity=0.267  Sum_probs=109.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCe--------------eEEe------eE----------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGK--------------TQLI------NH----------------   80 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~--------------t~~~------~~----------------   80 (219)
                      ...++|+|+|.+|+|||||+|+|++.. ....+..+++              +...      ..                
T Consensus        67 ~~~~~V~VvG~~naGKSSLlNaLlg~~-~~~v~~~p~T~~~~~i~~g~~~~~t~~~~~g~~~~~~~~~~i~~~~~i~~~~  145 (695)
T 2j69_A           67 QGVFRLLVLGDMKRGKSTFLNALIGEN-LLPSDVNPCTAVLTVLRYGPEKKVTIHFNDGKSPQQLDFQNFKYKYTIDPAE  145 (695)
T ss_dssp             HCCEEEEEECCTTSCHHHHHHHHHTSS-CSCCCCCTTTCCCEEEEECSSCEEEEEESSSCCCCEEEHHHHHHHSCCCHHH
T ss_pred             cCCCEEEEECCCCCCHHHHHHHHhCCC-CCCCCCCCCccceEEEEeCCCCeEEEEEcCCCcccccChhhhhhhhcCCHHH
Confidence            346899999999999999999999974 4444444443              1110      00                


Q ss_pred             -------------------EEe-----cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC
Q 027757           81 -------------------FLV-----NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ  136 (219)
Q Consensus        81 -------------------~~~-----~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~  136 (219)
                                         ...     ...+.+|||||+....       ........++..   +|++|+|+|++++.+
T Consensus       146 ~~~l~~~~~~~~~~v~~i~i~~p~~~l~~~l~LiDTPGl~~~~-------~~~~~~~~~i~~---aD~vL~Vvda~~~~s  215 (695)
T 2j69_A          146 AKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTE-------ARNELSLGYVNN---CHAILFVMRASQPCT  215 (695)
T ss_dssp             HHHHHTSSCCSCTTEEEEEEEECCHHHHTTEEEEECCCHHHHH-------TCHHHHTHHHHS---SSEEEEEEETTSTTC
T ss_pred             HHHHhhccccccccceEEEEEccchhccCCeEEEECCCCCchh-------hHHHHHHHHHHh---CCEEEEEEeCCCccc
Confidence                               000     0468999999975211       113445566666   899999999999887


Q ss_pred             cccHHHHH-HhccCCCcEEEEEEcccccccccCCC-chHhHHH----H----HHHHHhcCC------CCCCeEEeecC--
Q 027757          137 KIDLDCAN-WLGRNNIPLTFVFTKCDKMKVAKGRR-PDENIKS----F----QQLIRENYP------HHPPWIMTSSV--  198 (219)
Q Consensus       137 ~~~~~~~~-~~~~~~~p~iiv~nK~D~~~~~~~~~-~~~~~~~----~----~~~~~~~~~------~~~~~~~~Sa~--  198 (219)
                      ..+...+. .+...+.|+++|+||+|+........ ..+..++    .    ...+....+      ...+++++||+  
T Consensus       216 ~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~~~~g~~~~~~~v~~vSAk~a  295 (695)
T 2j69_A          216 LGERRYLENYIKGRGLTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYCTVEGQNIYDERVFELSSIQA  295 (695)
T ss_dssp             HHHHHHHHHHTTTSCCCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGGBSSSCBCGGGTEEECCHHHH
T ss_pred             hhHHHHHHHHHHhhCCCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhhcccccccCCCcEEEEeChHH
Confidence            76665553 45556789999999999875431110 0011111    1    122222211      23579999999  


Q ss_pred             ------------CCCChHHHHHHHHHHHh
Q 027757          199 ------------TGLGRDELLLHMSQLRN  215 (219)
Q Consensus       199 ------------~~~~v~el~~~l~~~~~  215 (219)
                                  ++.|+++++++|.+.+.
T Consensus       296 l~~~~~~~~~~~~~~Gi~~L~~~L~~~l~  324 (695)
T 2j69_A          296 LRRRLKNPQADLDGTGFPKFMDSLNTFLT  324 (695)
T ss_dssp             HHHHHHCTTCCCTTSSHHHHHHHHHHHHH
T ss_pred             HHhhccCchhhhhccCHHHHHHHHHHHHH
Confidence                        99999999999987654

>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*

Probab=99.80  E-value=4.4e-19  Score=141.41  Aligned_cols=168  Identities=18%  Similarity=0.196  Sum_probs=102.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccc----cccCCCC---eeEEe-------------------------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELA----LTSKKPG---KTQLI-------------------------------   78 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~----~~~~~~~---~t~~~-------------------------------   78 (219)
                      ...++|+|+|.+|+|||||+|+|++..+.+    ..+..++   ++...                               
T Consensus        22 ~~~~~I~vvG~~~~GKSTlln~l~g~~~lp~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  101 (315)
T 1jwy_B           22 LDLPQIVVVGSQSSGKSSVLENIVGRDFLPRGSGIVTRRPLILQLTHLPIADDGSQTQEWGEFLHKPNDMFYDFSEIREE  101 (315)
T ss_dssp             TCCCEEEEEECSSSSHHHHHHHHHTSCCCCC--------CEEEEEEECCCCTTSCCCCCEEEESSSTTCCBCCTHHHHHH
T ss_pred             CCCCeEEEEcCCCCCHHHHHHHHHCCCcCCCCCCceeeeeEEEEEEeCCCcccccchhhhhhhhcccccccCCHHHHHHH
Confidence            456899999999999999999999985422    1223331   11110                               


Q ss_pred             ----------------------eEEE-ecCeEEEEeCCCCCCCC---CCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757           79 ----------------------NHFL-VNKSWYIVDLPGYGFAK---APDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS  132 (219)
Q Consensus        79 ----------------------~~~~-~~~~~~liDtpg~~~~~---~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  132 (219)
                                            .... ....+.++||||+....   ........+......++..   +|++++|+|++
T Consensus       102 i~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~iilvvd~~  178 (315)
T 1jwy_B          102 IIRDTDRMTGKNKGISAQPINLKIYSPHVVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTPA  178 (315)
T ss_dssp             HHHHCC--------CCCCCEEEEEEETTSCSEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEES
T ss_pred             HHHHHHHhcCCCCCccCccEEEEEecCCCCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcC---CCeEEEEEEec
Confidence                                  0011 12479999999985311   1112234456666777776   89999999974


Q ss_pred             -CCCCccc-HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec---CC---CCChH
Q 027757          133 -VPPQKID-LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS---VT---GLGRD  204 (219)
Q Consensus       133 -~~~~~~~-~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa---~~---~~~v~  204 (219)
                       ......+ ..+..++...+.|+++|+||+|+.....      ...+..+  .........++++|+   .+   +.|+.
T Consensus       179 ~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~Dl~~~~~------~~~~~~~--~~~~~~~~~~~~v~~~sa~~~~~~~gv~  250 (315)
T 1jwy_B          179 NTDLANSDALQLAKEVDPEGKRTIGVITKLDLMDKGT------DAMEVLT--GRVIPLTLGFIGVINRSQEDIIAKKSIR  250 (315)
T ss_dssp             SSCSTTCSHHHHHHHHCSSCSSEEEEEECTTSSCSSC------CCHHHHT--TSSSCCTTCEEECCCCCHHHHSSSCCHH
T ss_pred             CcchhhhHHHHHHHHhCCCCCcEEEEEcCcccCCcch------HHHHHHh--CCCccCCCCeEEEecCChhhhccCCCHH
Confidence             4433333 4677888888999999999999976431      1111111  111111134555554   44   78899


Q ss_pred             HHHHHHHHHHh
Q 027757          205 ELLLHMSQLRN  215 (219)
Q Consensus       205 el~~~l~~~~~  215 (219)
                      ++++.+.+.+.
T Consensus       251 ~l~~~~~~~~~  261 (315)
T 1jwy_B          251 ESLKSEILYFK  261 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99998877654

>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}

Probab=99.80  E-value=4.9e-19  Score=149.76  Aligned_cols=114  Identities=18%  Similarity=0.189  Sum_probs=80.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-----------------ccc---ccCCCCeeEE---eeEEEecCeEEEEeCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE-----------------LAL---TSKKPGKTQL---INHFLVNKSWYIVDLPG   94 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----------------~~~---~~~~~~~t~~---~~~~~~~~~~~liDtpg   94 (219)
                      ...+|+|+|.+|+|||||+|+|+...-                 ...   .....+.+..   ......+..+.+|||||
T Consensus        12 ~~r~IaIiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~i~liDTPG   91 (528)
T 3tr5_A           12 MRRTFAIISHPDAGKTTLTEKLLLFGGAIQLAGTIKSRKAARHATSDWMELEKQRGISVTTSVMQFPYKDYLINLLDTPG   91 (528)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHHTTCHHHHHHHHTC----CCHHHHHHHHHHHCCSSSSSEEEEEETTEEEEEECCCC
T ss_pred             cCCEEEEECCCCCcHHHHHHHHHhhcCCcccceeeeccccccceecccchhhhcCCeeEEEeEEEEEeCCEEEEEEECCC
Confidence            357899999999999999999972110                 000   0001122211   12222345799999999


Q ss_pred             CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      +...          ......+++.   +|++|+|+|++++.+......+..+...++|+++|+||+|+..
T Consensus        92 ~~df----------~~~~~~~l~~---aD~allVvDa~~g~~~~t~~~~~~~~~~~iPiivviNK~Dl~~  148 (528)
T 3tr5_A           92 HADF----------TEDTYRTLTA---VDSALMVIDAAKGVEPRTIKLMEVCRLRHTPIMTFINKMDRDT  148 (528)
T ss_dssp             STTC----------CHHHHHGGGG---CSEEEEEEETTTCSCHHHHHHHHHHHTTTCCEEEEEECTTSCC
T ss_pred             chhH----------HHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence            7432          2234455555   8999999999999888888888888888999999999999864

>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*

Probab=99.80  E-value=4.9e-19  Score=151.15  Aligned_cols=157  Identities=21%  Similarity=0.222  Sum_probs=103.7

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-c------cccc------CCCCeeEEe---eEEEe-----cCeEEEEeCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE-L------ALTS------KKPGKTQLI---NHFLV-----NKSWYIVDLPGY   95 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-~------~~~~------~~~~~t~~~---~~~~~-----~~~~~liDtpg~   95 (219)
                      ....+|+|+|..++|||||+++|+.... .      ....      ...+.|...   ...+.     ...+.+|||||+
T Consensus         4 ~~irnI~IiGh~d~GKTTLi~rLl~~tg~i~~~~~~~~~~D~~~~ErerGITI~~~~~~~~~~~~dg~~~~inliDTPGh   83 (600)
T 2ywe_A            4 KNVRNFCIIAHVDHGKSTLADRLLEYTGAISEREKREQLLDTLDVERERGITVKMQAVRMFYKAKDGNTYKLHLIDTPGH   83 (600)
T ss_dssp             GGEEEEEEECC--CCHHHHHHHHHHHHTC-----------------------CCCCSEEEEEECTTSCEEEEEEECCCCS
T ss_pred             cCceEEEEECCCCCCHHHHHHHHHhccCCcccccccccccccchhhhcccceeeeeEEEEEEEcCCCCeEEEEEEECCCc
Confidence            3457899999999999999999986310 0      0000      112222211   11111     136889999996


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhH
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENI  175 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~  175 (219)
                      ..          |......+++.   +|++|+|+|++++.+.+....+..+...++|+++|+||+|+....        .
T Consensus        84 ~d----------F~~ev~r~l~~---aD~aILVVDa~~gv~~qt~~~~~~a~~~~ipiIvviNKiDl~~a~--------~  142 (600)
T 2ywe_A           84 VD----------FSYEVSRALAA---CEGALLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKIDLPSAD--------V  142 (600)
T ss_dssp             GG----------GHHHHHHHHHT---CSEEEEEEETTTBCCHHHHHHHHHHHHTTCEEEEEEECTTSTTCC--------H
T ss_pred             Hh----------HHHHHHHHHHh---CCEEEEEEECCCCccHHHHHHHHHHHHCCCCEEEEEeccCccccC--------H
Confidence            42          23344455555   899999999999988877777766677899999999999997531        2


Q ss_pred             HHHHHHHHhcCCC-CCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          176 KSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       176 ~~~~~~~~~~~~~-~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++..+++...++. ..+++++||++|.|+++++++|.+.+
T Consensus       143 ~~v~~el~~~lg~~~~~vi~vSAktg~GI~~Lle~I~~~l  182 (600)
T 2ywe_A          143 DRVKKQIEEVLGLDPEEAILASAKEGIGIEEILEAIVNRI  182 (600)
T ss_dssp             HHHHHHHHHTSCCCGGGCEECBTTTTBSHHHHHHHHHHHS
T ss_pred             HHHHHHHHHhhCCCcccEEEEEeecCCCchHHHHHHHHhc
Confidence            3334444444332 23589999999999999999998754

>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*

Probab=99.80  E-value=8.5e-20  Score=144.58  Aligned_cols=154  Identities=16%  Similarity=0.169  Sum_probs=94.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccc----cCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHH---HHH
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALT----SKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSS---FTK  113 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~----~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~---~~~  113 (219)
                      ||+++|.+|+|||||++++.+. +.+..    .++.+....  .+....++.+|||+|-.          .|..   ...
T Consensus         1 KIvllGdsgvGKTSLl~~~~~~-~~~~~~~~~~~Tig~~~~--~v~~~v~LqIWDTAGQE----------rf~~~~l~~~   67 (331)
T 3r7w_B            1 MVLLMGVRRCGKSSICKVVFHN-MQPLDTLYLESTSNPSLE--HFSTLIDLAVMELPGQL----------NYFEPSYDSE   67 (331)
T ss_dssp             CEEEECSTTSSTTHHHHHHHSC-CCSGGGTTCCCCCSCCCE--EECSSSCEEEEECCSCS----------SSCCCSHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHcC-CCCCccceecCeeeeeeE--EEccEEEEEEEECCCch----------hccchhhhhh
Confidence            6899999999999999998876 44332    233332221  11123478999999843          2221   357


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccH-HHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHH-HHHHHHHhcC
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDL-DCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIK-SFQQLIRENY  186 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~~  186 (219)
                      .|+++   ++++|+|+|+++. ..... ....++.     ..++|+++++||+|+...+.+......+. +..+.+....
T Consensus        68 ~yyr~---a~~~IlV~Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~~~R~~~~R~V~~~~~~~la~~~  143 (331)
T 3r7w_B           68 RLFKS---VGALVYVIDSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSEDFKVDAQRDIMQRTGEELLELG  143 (331)
T ss_dssp             HHHTT---CSEEEEECCCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCSHHHHHHHHHHHHHHHHTTSSSS
T ss_pred             hhccC---CCEEEEEEECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCchhhhhhHHHHhhHHHHHHHHhhc
Confidence            88888   8999999999986 32222 1222222     25799999999999976421100001111 1111222211


Q ss_pred             --CCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          187 --PHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       187 --~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                        +..++++++||++ .++.+.|..+.+
T Consensus       144 ~~~~~i~f~eTSAkd-~nV~eAFs~iv~  170 (331)
T 3r7w_B          144 LDGVQVSFYLTSIFD-HSIYEAFSRIVQ  170 (331)
T ss_dssp             CSCCCEEEECCCSSS-SHHHHHHHHHHT
T ss_pred             ccccCceEEEeccCC-CcHHHHHHHHHH
Confidence              1247899999998 588888887764

>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}

Probab=99.79  E-value=8.2e-21  Score=158.94  Aligned_cols=158  Identities=20%  Similarity=0.274  Sum_probs=105.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|.+++|||||+++|.+.....  ....+.|.+...+.   .+..+.+|||||+.....             .
T Consensus         3 R~~~V~IvGhvd~GKTTLl~~L~~~~v~~--~e~~GIT~~i~~~~v~~~~~~i~~iDTPGhe~f~~-------------~   67 (501)
T 1zo1_I            3 RAPVVTIMGHVDHGKTSLLEYIRSTKVAS--GEAGGITQHIGAYHVETENGMITFLDTPGHAAFTS-------------M   67 (501)
T ss_dssp             CCCCEEEEESTTSSSHHHHHHHHHHHHSB--TTBCCCCCCSSCCCCCTTSSCCCEECCCTTTCCTT-------------S
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCcc--ccCCCeeEeEEEEEEEECCEEEEEEECCCcHHHHH-------------H
Confidence            46899999999999999999999853221  22233443332222   234789999999753211             1


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      ..+....+|++|+|+|++++...+..+.+..+...++|+++++||+|+......... ..+.+. ..+...++...++++
T Consensus        68 ~~~~~~~aD~aILVVda~~g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~~~~~v~-~~l~~~-~~~~~~~~~~~~~v~  145 (501)
T 1zo1_I           68 RARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEADPDRVK-NELSQY-GILPEEWGGESQFVH  145 (501)
T ss_dssp             BCSSSBSCSSEEEEEETTTBSCTTTHHHHHHHHHTTCCEEEEEECSSSSTTCCCCTT-CCCCCC-CCCTTCCSSSCEEEE
T ss_pred             HHHHHhhCCEEEEEeecccCccHHHHHHHHHHHhcCceEEEEEEeccccccCHHHHH-HHHHHh-hhhHHHhCCCccEEE
Confidence            123344589999999999977777777777777789999999999999753211110 000000 000112233468999


Q ss_pred             eecCCCCChHHHHHHHHH
Q 027757          195 TSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~  212 (219)
                      +||++|.|++++++++..
T Consensus       146 vSAktG~gI~eLle~I~~  163 (501)
T 1zo1_I          146 VSAKAGTGIDELLDAILL  163 (501)
T ss_dssp             CCTTTCTTCTTHHHHTTT
T ss_pred             EeeeeccCcchhhhhhhh
Confidence            999999999999999864

>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*

Probab=99.79  E-value=4.7e-19  Score=149.00  Aligned_cols=150  Identities=18%  Similarity=0.207  Sum_probs=93.8

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc-----------------------------cccccCCCCeeEEeeEEE---ecC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE-----------------------------LALTSKKPGKTQLINHFL---VNK   85 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~-----------------------------~~~~~~~~~~t~~~~~~~---~~~   85 (219)
                      ..++|+++|.+|+|||||+++|++...                             ........++|.+.....   .+.
T Consensus        32 ~~~ki~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~  111 (483)
T 3p26_A           32 PHLSFVVLGHVDAGKSTLMGRLLYDLNIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTHRA  111 (483)
T ss_dssp             CEEEEEEESCGGGTHHHHHHHHHHHTTSSCHHHHHHHCC------------------------CCSSCCCCEEEEECSSC
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHhcCCccHHHHHHHHHHHHhcCCCcchhhhhhccchhHhhcCcceEeeeEEEecCCc
Confidence            458999999999999999999986510                             011112234444333322   234


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------cccHHHHHHhccCC-CcEEEEE
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KIDLDCANWLGRNN-IPLTFVF  157 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~~~~~~~~~~~~-~p~iiv~  157 (219)
                      .+.+|||||+.          .|......++..   +|++|+|+|++++.+       .+..+....+...+ .|+++|+
T Consensus       112 ~~~iiDTPG~~----------~f~~~~~~~~~~---aD~~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~~~~iIvvi  178 (483)
T 3p26_A          112 NFTIVDAPGHR----------DFVPNAIMGISQ---ADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLIIAM  178 (483)
T ss_dssp             EEEEECCCCCG----------GGHHHHHHHHTT---CSEEEEEEECCC------CCCCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             eEEEEECCCcH----------HHHHHHHHhhhh---CCEEEEEEECCCCccccccchhhhHHHHHHHHHHcCCCcEEEEE
Confidence            79999999962          344555566666   999999999998633       33344555555555 4699999


Q ss_pred             EcccccccccCCCchHhHHHHHHHHHhc---CC---CCCCeEEeecCCCCChHH
Q 027757          158 TKCDKMKVAKGRRPDENIKSFQQLIREN---YP---HHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       158 nK~D~~~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~Sa~~~~~v~e  205 (219)
                      ||+|+.+..     ....++..+.+...   ++   ..++++++||++|.|+++
T Consensus       179 NK~Dl~~~~-----~~~~~~i~~~~~~~l~~~g~~~~~~~~i~iSA~~g~gi~e  227 (483)
T 3p26_A          179 NKMDNVDWS-----QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYK  227 (483)
T ss_dssp             ECGGGGTTC-----HHHHHHHHHHHHHHHHHHTCCGGGEEEEECCSSSCTTSSS
T ss_pred             ECcCcccch-----HHHHHHHHHHHHHHHHHcCCCcccceEEEEeeecCCCccc
Confidence            999997521     12222222222111   11   136899999999999985

>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*

Probab=99.79  E-value=5.8e-19  Score=145.04  Aligned_cols=161  Identities=17%  Similarity=0.183  Sum_probs=104.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-------ccc-------cccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK-------ELA-------LTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~-------~~~-------~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~  101 (219)
                      .++|+++|.+++|||||+++|++..       +..       ......+.|........   +..+.++||||+.     
T Consensus         3 ~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~d~~~~e~~~giTi~~~~~~~~~~~~~~~iiDtpG~~-----   77 (397)
T 1d2e_A            3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGHA-----   77 (397)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSHH-----
T ss_pred             eEEEEEEeCCCCCHHHHHHHHhChhhhcCccccchhhhhhcCHHHHhcCcEEEeeeEEeccCCeEEEEEECCChH-----
Confidence            4689999999999999999999741       000       00113344544333222   3579999999952     


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHHH
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQQ  180 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~~  180 (219)
                           .|......   ....+|++|+|+|++++...+..+.+..+...++| +++++||+|+.+.+..  .+...++..+
T Consensus        78 -----~f~~~~~~---~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~vp~iivviNK~Dl~~~~~~--~~~~~~~~~~  147 (397)
T 1d2e_A           78 -----DYVKNMIT---GTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEM--VELVELEIRE  147 (397)
T ss_dssp             -----HHHHHHHH---TSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHH--HHHHHHHHHH
T ss_pred             -----HHHHHHHh---hHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCeEEEEEECcccCCCHHH--HHHHHHHHHH
Confidence                 23333333   34459999999999998777777777777777889 6899999999742100  0011112222


Q ss_pred             HHHhcC--CCCCCeEEeecCCCCC----------hHHHHHHHHHHH
Q 027757          181 LIRENY--PHHPPWIMTSSVTGLG----------RDELLLHMSQLR  214 (219)
Q Consensus       181 ~~~~~~--~~~~~~~~~Sa~~~~~----------v~el~~~l~~~~  214 (219)
                      .+....  ....+++++||++|.|          +++|+++|.+.+
T Consensus       148 ~l~~~~~~~~~~~~i~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~  193 (397)
T 1d2e_A          148 LLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTYI  193 (397)
T ss_dssp             HHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHHS
T ss_pred             HHHHcCCCcccCcEEEeehhhcccccCCCccCCcHHHHHHHHHHhC
Confidence            222221  1247899999999764          889999887754

>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...

Probab=99.78  E-value=1.3e-18  Score=143.39  Aligned_cols=162  Identities=19%  Similarity=0.187  Sum_probs=104.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc--------cccc--cc-----CCCCeeEEeeEEE---ecCeEEEEeCCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK--------ELAL--TS-----KKPGKTQLINHFL---VNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~--------~~~~--~~-----~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~   99 (219)
                      ..++|+++|.+|+|||||+++|++..        +...  ..     ...+.|.......   .+..+.+|||||+.   
T Consensus        10 ~~~~I~iiG~~~~GKSTLi~~L~~~~~~~g~~~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~~~~~~iiDtpG~~---   86 (405)
T 2c78_A           10 PHVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA---   86 (405)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG---
T ss_pred             CeEEEEEEcCCCCCHHHHHHHHHhhhhhcCccccccchhhccCCHHHHHcCCCEEeeeeEeccCCeEEEEEECCChH---
Confidence            45799999999999999999999831        1000  00     1223333222222   23579999999964   


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSF  178 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~  178 (219)
                             .|......++..   +|++|+|+|++++...+..+.+..+...++| +++++||+|+.+.+..  .+...++.
T Consensus        87 -------~f~~~~~~~~~~---aD~~ilVvda~~g~~~qt~~~l~~~~~~~ip~iivviNK~Dl~~~~~~--~~~~~~~~  154 (405)
T 2c78_A           87 -------DYIKNMITGAAQ---MDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPEL--LDLVEMEV  154 (405)
T ss_dssp             -------GGHHHHHHHHTT---CSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCHHH--HHHHHHHH
T ss_pred             -------HHHHHHHHHHHH---CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEEECccccCcHHH--HHHHHHHH
Confidence                   233444445554   8999999999998877777777777777889 8999999999742100  00011122


Q ss_pred             HHHHHhcC--CCCCCeEEeecCCCCC------------------hHHHHHHHHHHH
Q 027757          179 QQLIRENY--PHHPPWIMTSSVTGLG------------------RDELLLHMSQLR  214 (219)
Q Consensus       179 ~~~~~~~~--~~~~~~~~~Sa~~~~~------------------v~el~~~l~~~~  214 (219)
                      .+.+....  ....+++++||++|.|                  +++|+++|.+.+
T Consensus       155 ~~~l~~~~~~~~~~~~i~~SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~l  210 (405)
T 2c78_A          155 RDLLNQYEFPGDEVPVIRGSALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYI  210 (405)
T ss_dssp             HHHHHHTTSCTTTSCEEECCHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHhcccccCCCEEEccHHHhhhhhccccccccCCCcccccHHHHHHHHHhhc
Confidence            22222221  1247899999999987                  777887776643

>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A

Probab=99.78  E-value=8e-19  Score=142.13  Aligned_cols=169  Identities=17%  Similarity=0.142  Sum_probs=107.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccc----ccCCCCe----------------------eEE-------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELAL----TSKKPGK----------------------TQL-------------   77 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~----~~~~~~~----------------------t~~-------------   77 (219)
                      ...++|+|+|.+|+|||||+|+|++..+.+.    .+..++.                      +..             
T Consensus        29 ~~~~~I~vvG~~~~GKSSLln~L~g~~~~p~~~~~~t~~p~~~~~~~~~~~~~~~~~~~~~~~tt~~~v~~~i~~~~~~i  108 (353)
T 2x2e_A           29 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNATTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  108 (353)
T ss_dssp             CCCCEEEEECBTTSSHHHHHHTTTTSCCSCCCSSSCCCSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCeEEEECCCCCCHHHHHHHHhCCCcCCCCCCcccccceEEEEEcCCccceeeeecCCcccCCHHHHHHHHHHHHHHh
Confidence            3468999999999999999999999754322    2222321                      110             


Q ss_pred             -------------eeEEEe-cCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH
Q 027757           78 -------------INHFLV-NKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL  140 (219)
Q Consensus        78 -------------~~~~~~-~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~  140 (219)
                                   ...... ...+.+|||||+.....   .....+.+..+...|+..  ..+++++|+|++......+.
T Consensus       109 ~g~~~gi~~~~~~~~i~~~~~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~iiL~v~~a~~~~~~~~~  186 (353)
T 2x2e_A          109 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTK--ENCLILAVSPANSDLANSDA  186 (353)
T ss_dssp             HTTTTCCCCCCEEEEEEETTCCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTS--TTEEEEEEEETTSCGGGCHH
T ss_pred             cccCCCcccCceEEEEecCCCCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcC--CCeEEEEEecCCCccchhHH
Confidence                         000111 24799999999754221   222234667788888764  25677778888765554443


Q ss_pred             -HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC-CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          141 -DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP-HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       141 -~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                       .+++.+...+.|+++|+||+|+.+....      .....+.....+. ...+++++||+++.|++++++++.+.
T Consensus       187 ~~i~~~~~~~~~~~i~V~NK~Dl~~~~~~------~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e  255 (353)
T 2x2e_A          187 LKVAKEVDPQGQRTIGVITKLDLMDEGTD------ARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  255 (353)
T ss_dssp             HHHHHHHCTTCTTEEEEEECGGGSCTTCC------CHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHhCcCCCceEEEeccccccCcchh------HHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence             3667777788999999999999764211      1111111000011 11367899999999999999998763

>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8

Probab=99.78  E-value=1.5e-18  Score=144.05  Aligned_cols=156  Identities=18%  Similarity=0.165  Sum_probs=95.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc--c-------ccccCC----------------------CCeeEEeeEEE---
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE--L-------ALTSKK----------------------PGKTQLINHFL---   82 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~--~-------~~~~~~----------------------~~~t~~~~~~~---   82 (219)
                      ...++|+++|.+++|||||+++|++...  .       ...+..                      .+.|.+.....   
T Consensus        22 ~~~~~i~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~i~~~s~~~gt~~~~~~~~~~~d~~~~E~~rGiTi~~~~~~~~~  101 (434)
T 1zun_B           22 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST  101 (434)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHhhcCCCchhhhhhhhhhhhccCccccchhhhhhhccChhHHHCCcEEEeeeeEeec
Confidence            3457999999999999999999987520  0       000111                      12222222111   


Q ss_pred             ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEccc
Q 027757           83 VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCD  161 (219)
Q Consensus        83 ~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D  161 (219)
                      .+..+.+|||||+.          .|......++..   +|++|+|+|++++...+..+.+..+...+. |+++|+||+|
T Consensus       102 ~~~~~~iiDtpGh~----------~f~~~~~~~~~~---aD~~ilVvDa~~g~~~qt~~~l~~~~~~~~~~iIvviNK~D  168 (434)
T 1zun_B          102 AKRKFIIADTPGHE----------QYTRNMATGAST---CDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD  168 (434)
T ss_dssp             SSEEEEEEECCCSG----------GGHHHHHHHHTT---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred             CCceEEEEECCChH----------HHHHHHHHHHhh---CCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEcCc
Confidence            23368999999953          233444455555   899999999999877666665555555666 5999999999


Q ss_pred             ccccccCCCchHhHHHHHHHHHhcC--CCCCCeEEeecCCCCChHHH
Q 027757          162 KMKVAKGRRPDENIKSFQQLIRENY--PHHPPWIMTSSVTGLGRDEL  206 (219)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~Sa~~~~~v~el  206 (219)
                      +.+... +......+++.+.+....  ....+++++||++|.|++++
T Consensus       169 l~~~~~-~~~~~i~~~~~~~~~~~g~~~~~~~~i~vSA~~g~gi~~~  214 (434)
T 1zun_B          169 LNGFDE-RVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVVNK  214 (434)
T ss_dssp             TTTSCH-HHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTSSC
T ss_pred             CCcccH-HHHHHHHHHHHHHHHHhCCCccCceEEEEeccCCCCcccc
Confidence            975310 000011122222222222  23368999999999999873

>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}

Probab=99.78  E-value=4.5e-18  Score=138.19  Aligned_cols=143  Identities=17%  Similarity=0.126  Sum_probs=99.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      +|+++|.+++|||||+++|+.+          +.|.+.....   .+..+.+|||||+..          |.......++
T Consensus        23 ~i~iiG~~d~GKSTL~~~L~~~----------giTi~~~~~~~~~~~~~i~iiDtPGh~~----------f~~~~~~~~~   82 (370)
T 2elf_A           23 NVAIIGTEKSGRTSLAANLGKK----------GTSSDITMYNNDKEGRNMVFVDAHSYPK----------TLKSLITALN   82 (370)
T ss_dssp             EEEEEESTTSSHHHHHHTTSEE----------EEESSSEEEEECSSSSEEEEEECTTTTT----------CHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhC----------CEEEEeeEEEEecCCeEEEEEECCChHH----------HHHHHHHHHH
Confidence            8999999999999999999822          2222222221   245799999999642          2222233344


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcE-EEEEE-cccccccccCCCchHhHHHHHHHHHhcC----CCCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL-TFVFT-KCDKMKVAKGRRPDENIKSFQQLIRENY----PHHPP  191 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~n-K~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  191 (219)
                      .   +|++|+|+| .++...+..+.+..+...++|. ++++| |+|+ +.       +..++..+++...+    ....+
T Consensus        83 ~---aD~ailVvd-~~g~~~qt~e~~~~~~~~~i~~~ivvvNNK~Dl-~~-------~~~~~~~~~i~~~l~~~~~~~~~  150 (370)
T 2elf_A           83 I---SDIAVLCIP-PQGLDAHTGECIIALDLLGFKHGIIALTRSDST-HM-------HAIDELKAKLKVITSGTVLQDWE  150 (370)
T ss_dssp             T---CSEEEEEEC-TTCCCHHHHHHHHHHHHTTCCEEEEEECCGGGS-CH-------HHHHHHHHHHHHHTTTSTTTTCE
T ss_pred             H---CCEEEEEEc-CCCCcHHHHHHHHHHHHcCCCeEEEEEEeccCC-CH-------HHHHHHHHHHHHHHHhcCCCceE
Confidence            4   899999999 7776666666666666778888 99999 9999 43       12222222222222    23468


Q ss_pred             eEE--eecCC---CCChHHHHHHHHHHHh
Q 027757          192 WIM--TSSVT---GLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~--~Sa~~---~~~v~el~~~l~~~~~  215 (219)
                      +++  +||++   +.|+++++++|.+...
T Consensus       151 ii~~~~SA~~~~~g~gi~~L~~~l~~~~~  179 (370)
T 2elf_A          151 CISLNTNKSAKNPFEGVDELKARINEVAE  179 (370)
T ss_dssp             EEECCCCTTSSSTTTTHHHHHHHHHHHHH
T ss_pred             EEecccccccCcCCCCHHHHHHHHHhhcc
Confidence            999  99999   9999999999987654

>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8

Probab=99.77  E-value=5.7e-19  Score=133.40  Aligned_cols=117  Identities=19%  Similarity=0.267  Sum_probs=74.2

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ....++|+++|++|+|||||+++|++..+......... +....  .....+.++||||..          .+......+
T Consensus         9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~--~~~~~~~l~Dt~G~~----------~~~~~~~~~   75 (218)
T 1nrj_B            9 KSYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEP-LSAAD--YDGSGVTLVDFPGHV----------KLRYKLSDY   75 (218)
T ss_dssp             -CCCCEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSC-EEETT--GGGSSCEEEECCCCG----------GGTHHHHHH
T ss_pred             cCCCCEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCc-eEEEE--eeCceEEEEECCCcH----------HHHHHHHHH
Confidence            34578999999999999999999999753321111111 11111  134578999999963          222334444


Q ss_pred             hhc-cCCccEEEEEEeCC-CCCCcccH--HHHHHh------ccCCCcEEEEEEccccccc
Q 027757          116 FLN-RESLVGVLLLIDAS-VPPQKIDL--DCANWL------GRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       116 ~~~-~~~~d~vi~v~d~~-~~~~~~~~--~~~~~~------~~~~~p~iiv~nK~D~~~~  165 (219)
                      ++. ...+|++|+|+|++ ++.+....  .+...+      ...++|+++|+||+|+...
T Consensus        76 ~~~~~~~~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~  135 (218)
T 1nrj_B           76 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA  135 (218)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred             HHhccccCCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence            432 12369999999999 55554332  111222      1258999999999999765

>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.2e-18  Score=148.13  Aligned_cols=151  Identities=19%  Similarity=0.231  Sum_probs=95.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCccccccc------------------------------CCCCeeEEeeEE---Ee
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTS------------------------------KKPGKTQLINHF---LV   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~------------------------------~~~~~t~~~~~~---~~   83 (219)
                      ...++|+++|.+|+|||||+++|++.. .....                              ...|+|.+....   ..
T Consensus       165 k~~lkV~ivG~~n~GKSTLin~Ll~~~-~~i~~~~i~~~~~~~~~~g~~~~~~a~~~d~~~~e~~~GiTid~~~~~~~~~  243 (611)
T 3izq_1          165 LPHLSFVVLGHVDAGKSTLMGRLLYDL-NIVNQSQLRKLQRESETMGKSSFKFAWIMDQTNEERERGVTVSICTSHFSTH  243 (611)
T ss_dssp             CCCCEEEEECCSSSCHHHHHHHHHSCS-SCSCCHHHHHHHHHSSCSSSSCCSSSHHHHHHHHHHHTTTCCSCSCCEEECS
T ss_pred             CCceEEEEEECCCCCHHHHHHHHHHhc-CCccHHHHHHHHhhhhhccccccceeeeeccchhhhhCCeeEeeeeEEEecC
Confidence            446899999999999999999999752 11110                              013444433222   23


Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-------CCcccHHHHHHhccCCCc-EEE
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-------PQKIDLDCANWLGRNNIP-LTF  155 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~p-~ii  155 (219)
                      +..+.+|||||+..             +..........+|++|+|+|++++       ...+..+.+..+...++| +++
T Consensus       244 ~~~~~iiDTPG~e~-------------f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lgi~~iIV  310 (611)
T 3izq_1          244 RANFTIVDAPGHRD-------------FVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQTKEHMLLASSLGIHNLII  310 (611)
T ss_dssp             SCEEEEEECCSSSC-------------HHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTTCCEEEE
T ss_pred             CceEEEEECCCCcc-------------cHHHHHHHHhhcCceEEEEECCCCcccccchhhhHHHHHHHHHHHcCCCeEEE
Confidence            44799999999631             223333444559999999999874       223444555555555654 999


Q ss_pred             EEEcccccccccCCCchHhHHHHHHHH----HhcCC--CCCCeEEeecCCCCChHHH
Q 027757          156 VFTKCDKMKVAKGRRPDENIKSFQQLI----RENYP--HHPPWIMTSSVTGLGRDEL  206 (219)
Q Consensus       156 v~nK~D~~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~Sa~~~~~v~el  206 (219)
                      |+||+|+.+..     ....++..+.+    .....  ..++++++||++|.|+.++
T Consensus       311 VvNKiDl~~~~-----~~~~~ei~~~l~~~l~~~g~~~~~~~~i~vSA~tG~gI~el  362 (611)
T 3izq_1          311 AMNKMDNVDWS-----QQRFEEIKSKLLPYLVDIGFFEDNINWVPISGFSGEGVYKI  362 (611)
T ss_dssp             EEECTTTTTTC-----HHHHHHHHHHHHHHHHHHTCCGGGCEEEECCTTTCTTTSSC
T ss_pred             EEecccccchh-----HHHHHHHHHHHHHHHHhhcccccCccEEeeecccCCCcccc
Confidence            99999987621     11222222222    11111  1368999999999999865

>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*

Probab=99.74  E-value=5.1e-18  Score=140.92  Aligned_cols=157  Identities=13%  Similarity=0.138  Sum_probs=91.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc--cccc---------------------------ccCCCCeeEEeeEE---EecC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK--ELAL---------------------------TSKKPGKTQLINHF---LVNK   85 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~--~~~~---------------------------~~~~~~~t~~~~~~---~~~~   85 (219)
                      ..++|+++|.+|+|||||+++|++..  +...                           .....++|.+....   ..+.
T Consensus         5 ~~~~I~iiG~~~~GKSTLi~~Ll~~~~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~giTi~~~~~~~~~~~~   84 (435)
T 1jny_A            5 PHLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKY   84 (435)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSC
T ss_pred             CEEEEEEEeCCCCCHHHHHHHHHHHcCCcCHHHHhhhhhhhhhcCCcchhhhhhhccChHHHhcCceeEeeEEEEecCCe
Confidence            45799999999999999999998641  1100                           01123444433221   2245


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-------CCcccHHHHHHhccCCC-cEEEEE
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-------PQKIDLDCANWLGRNNI-PLTFVF  157 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~-p~iiv~  157 (219)
                      .+.+|||||+.          .|......+++   .+|++|+|+|++++       ...+..+.+..+...++ |+++++
T Consensus        85 ~~~iiDtpG~~----------~f~~~~~~~~~---~aD~~ilVvDa~~gsfe~~~~~~~qt~~~~~~~~~~~~~~iivvi  151 (435)
T 1jny_A           85 FFTIIDAPGHR----------DFVKNMITGAS---QADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAV  151 (435)
T ss_dssp             EEEECCCSSST----------THHHHHHHTSS---CCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEE
T ss_pred             EEEEEECCCcH----------HHHHHHHhhhh---hcCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEEEE
Confidence            79999999963          23334444444   49999999999985       33344455555555565 589999


Q ss_pred             EcccccccccCCC-chHhHHHHHHHHHhcC-C-CCCCeEEeecCCCCChHHHH
Q 027757          158 TKCDKMKVAKGRR-PDENIKSFQQLIRENY-P-HHPPWIMTSSVTGLGRDELL  207 (219)
Q Consensus       158 nK~D~~~~~~~~~-~~~~~~~~~~~~~~~~-~-~~~~~~~~Sa~~~~~v~el~  207 (219)
                      ||+|+.+....+. .....+++.+.+.... . ..++++++||++|.|+.+++
T Consensus       152 NK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~i~iSA~~g~~v~e~~  204 (435)
T 1jny_A          152 NKMDLTEPPYDEKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITHKS  204 (435)
T ss_dssp             ECGGGSSSTTCHHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTBCC
T ss_pred             EcccCCCccccHHHHHHHHHHHHHHHHHcCCCcCCceEEEeecccCccccccc
Confidence            9999976210000 0111222222222221 1 13689999999999997543

>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B

Probab=99.74  E-value=1.3e-17  Score=149.53  Aligned_cols=162  Identities=18%  Similarity=0.228  Sum_probs=101.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc-------cc-------cccCCCCeeEEeeEEE---ecCeEEEEeCCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE-------LA-------LTSKKPGKTQLINHFL---VNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~-------~~-------~~~~~~~~t~~~~~~~---~~~~~~liDtpg~~~~~   99 (219)
                      ...++|+++|.+++|||||+++|++...       ..       ......+.|.......   .+..+.+|||||+.   
T Consensus       294 k~~lnIvIIGhvDvGKSTLInrLt~~~~~~G~a~f~~~a~lD~~~~ErerGITIdva~v~f~~~~~kI~IIDTPGHe---  370 (1289)
T 3avx_A          294 KPHVNVGTIGHVDHGKTTLTAAITTVLAKTYGGAARAFDQIDNAPEEKARGITINTSHVEYDTPTRHYAHVDCPGHA---  370 (1289)
T ss_dssp             CCEEEEEEEESTTSSHHHHHHHHHHHHHHHSCC---------------------CCSCEEEECSSCEEEEEECCCHH---
T ss_pred             CCeeEEEEEcCCCCCHHHHHHHHHhhhccccccccccccccccccccccCceeEEEEEEEEcCCCEEEEEEECCChH---
Confidence            3457999999999999999999997410       00       1112334444332222   23479999999952   


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHH
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSF  178 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~  178 (219)
                             .|   ..........+|++|+|+|++++...+..+.+..+...++| +++++||+|+.+.+..  .+...++.
T Consensus       371 -------dF---~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~ll~~lgIP~IIVVINKiDLv~d~e~--le~i~eEi  438 (1289)
T 3avx_A          371 -------DY---VKNMITGAAQMDGAILVVAATDGPMPQTREHILLGRQVGVPYIIVFLNKCDMVDDEEL--LELVEMEV  438 (1289)
T ss_dssp             -------HH---HHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHHHHHHTCSCEEEEEECCTTCCCHHH--HHHHHHHH
T ss_pred             -------HH---HHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHHHHHcCCCeEEEEEeecccccchhh--HHHHHHHH
Confidence                   23   33334445559999999999998777777666666667888 7899999999752110  00011122


Q ss_pred             HHHHHhcC--CCCCCeEEeecCCC--------CChHHHHHHHHHH
Q 027757          179 QQLIRENY--PHHPPWIMTSSVTG--------LGRDELLLHMSQL  213 (219)
Q Consensus       179 ~~~~~~~~--~~~~~~~~~Sa~~~--------~~v~el~~~l~~~  213 (219)
                      .+.+....  ....+++++||++|        .|+++++++|.+.
T Consensus       439 ~elLk~~G~~~~~vp~IpvSAktG~ng~~~w~eGI~eLleaL~~~  483 (1289)
T 3avx_A          439 RELLSQYDFPGDDTPIVRGSALKALEGDAEWEAKILELAGFLDSY  483 (1289)
T ss_dssp             HHHHHHTTSCTTTCCEEECCSTTTTTCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHhccccccceeEEEEEeccCCCCCccccccchhhHhHHhhh
Confidence            22222221  12478999999999        4688888888764

>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.74  E-value=1e-17  Score=135.85  Aligned_cols=168  Identities=17%  Similarity=0.204  Sum_probs=81.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccC------CCCeeEEeeEE--Eec---CeEEEEeCCCCCCCCCCcch
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELA-LTSK------KPGKTQLINHF--LVN---KSWYIVDLPGYGFAKAPDVT  104 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~------~~~~t~~~~~~--~~~---~~~~liDtpg~~~~~~~~~~  104 (219)
                      ...++|+|+|++|+|||||+|+|++..... ...+      .++........  ..+   ..+.+|||||+......   
T Consensus        35 ~~~~~I~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~l~i~DTpG~gd~~~~---  111 (361)
T 2qag_A           35 GFEFTLMVVGESGLGKSTLINSLFLTDLYPERVIPGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINC---  111 (361)
T ss_dssp             CCEECEEECCCTTSCHHHHHHHHTTCCC---------------CEEEEEEEEC----CEEEEEEEEC-------------
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHhCCCCCCCCcccCCCcccCCceeEEEEEEEeecCCcccceEEEEeccccccCcc---
Confidence            456899999999999999999988753221 1110      01111111111  111   25899999998543211   


Q ss_pred             hhhHHHHH-------HHHhhccCC----------ccEEEEEEeC-CCCCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757          105 RMDWSSFT-------KGYFLNRES----------LVGVLLLIDA-SVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       105 ~~~~~~~~-------~~~~~~~~~----------~d~vi~v~d~-~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  166 (219)
                      .+.|..+.       ..|++....          +|+++|+++. .......+..+++.+. .++|+++|+||+|+....
T Consensus       112 ~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l~-~~~piIlV~NK~Dl~~~~  190 (361)
T 2qag_A          112 RDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLK  190 (361)
T ss_dssp             ----CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHTC-S-SCEEEEEECCSSSCHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHhc-cCCCEEEEEECCCCCCHH
Confidence            11122222       255554332          3578888876 3444444445555554 679999999999997642


Q ss_pred             cCCCchHhHHHHHHHHHhcC-CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          167 KGRRPDENIKSFQQLIRENY-PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       167 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                             .+..+.+.+.... ...++++++||+++.| ++.+.++.+.+..
T Consensus       191 -------ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~e~~~~l~~~i~~  233 (361)
T 2qag_A          191 -------ERERLKKRILDEIEEHNIKIYHLPDAESDE-DEDFKEQTRLLKA  233 (361)
T ss_dssp             -------HHHHHHHHHHHHTTCC-CCSCCCC----------CHHHHHHHHH
T ss_pred             -------HHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-chhHHHHHHHHHh
Confidence                   2333222222222 1247899999999998 7777777665543

>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*

Probab=99.74  E-value=8.5e-18  Score=136.14  Aligned_cols=157  Identities=22%  Similarity=0.238  Sum_probs=93.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeEEe-----------------eEE-------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQLI-----------------NHF-------------   81 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~~~-----------------~~~-------------   81 (219)
                      ...++|+|+|.+|+|||||+++|....     ........+..+...                 ..+             
T Consensus        77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp~~~~~~g~~l~d~~~~~~~~~~~~~~i~~~~~~~~~~~~  156 (355)
T 3p32_A           77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDPSSTRTGGSILGDKTRMARLAVHPNAYIRPSPTSGTLGGV  156 (355)
T ss_dssp             CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC----------------CHHHHTCTTEEEECCC--CCHHHH
T ss_pred             CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCCCCCcccchhccchhhHHhhccCCCeeEEECCCCccccch
Confidence            456789999999999999999997531     011111111111100                 000             


Q ss_pred             ------------EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC
Q 027757           82 ------------LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN  149 (219)
Q Consensus        82 ------------~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  149 (219)
                                  ..+..++++||||+...        .     ....   ..+|++++|+|+..........  ..+  .
T Consensus       157 ~~~t~d~i~~~~~~~~~~iiiDTpGi~~~--------~-----~~~~---~~aD~vl~V~d~~~~~~~~~l~--~~~--~  216 (355)
T 3p32_A          157 TRATRETVVLLEAAGFDVILIETVGVGQS--------E-----VAVA---NMVDTFVLLTLARTGDQLQGIK--KGV--L  216 (355)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSCSSH--------H-----HHHH---TTCSEEEEEEESSTTCTTTTCC--TTS--G
T ss_pred             hHHHHHHHHHHhhCCCCEEEEeCCCCCcH--------H-----HHHH---HhCCEEEEEECCCCCccHHHHH--HhH--h
Confidence                        01357999999997421        0     1112   3389999999987654432211  111  3


Q ss_pred             CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +.|+++|+||+|+......   ....+++.+.+....    ...++++++||++|.|+++++++|.+.+..
T Consensus       217 ~~p~ivVlNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~  284 (355)
T 3p32_A          217 ELADIVVVNKADGEHHKEA---RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV  284 (355)
T ss_dssp             GGCSEEEEECCCGGGHHHH---HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred             hcCCEEEEECCCCcChhHH---HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence            4699999999998754211   111222222222111    224689999999999999999999887654

>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A

Probab=99.74  E-value=8.1e-19  Score=146.51  Aligned_cols=150  Identities=17%  Similarity=0.148  Sum_probs=92.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc--ccc---------------------------cccCCCCeeEEeeEEE---ecCe
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK--ELA---------------------------LTSKKPGKTQLINHFL---VNKS   86 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~--~~~---------------------------~~~~~~~~t~~~~~~~---~~~~   86 (219)
                      .++|+++|.+++|||||+++|++..  +..                           ......+.|.+.....   .+..
T Consensus         7 ~~~i~iiG~~~~GKSTLi~~Ll~~~~~~~~~~~~~~~~~~~~~g~~~~~~a~~~d~~~~er~~GiTi~~~~~~~~~~~~~   86 (458)
T 1f60_A            7 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   86 (458)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCcChHHHHHhhhhHHhcCCcchhhhhhhccchhHHhcCcEEEEEEEEEecCCce
Confidence            5799999999999999999998641  100                           0001133443322222   2347


Q ss_pred             EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc-------ccHHHHHHhccCCCc-EEEEEE
Q 027757           87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK-------IDLDCANWLGRNNIP-LTFVFT  158 (219)
Q Consensus        87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-------~~~~~~~~~~~~~~p-~iiv~n  158 (219)
                      +.+|||||+.          .|......+   ...+|++|+|+|++++...       +..+.+..+...++| +++|+|
T Consensus        87 ~~iiDtPGh~----------~f~~~~~~~---~~~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~v~~iivviN  153 (458)
T 1f60_A           87 VTVIDAPGHR----------DFIKNMITG---TSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN  153 (458)
T ss_dssp             EEEEECCCCT----------THHHHHHHS---SSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEECCCcH----------HHHHHHHhh---hhhCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcCCCeEEEEEE
Confidence            9999999953          233333333   4459999999999875322       344445555556776 999999


Q ss_pred             cccccccccCCCchHhHHHHHH----HHHhcCC--CCCCeEEeecCCCCChHHH
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQ----LIRENYP--HHPPWIMTSSVTGLGRDEL  206 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~----~~~~~~~--~~~~~~~~Sa~~~~~v~el  206 (219)
                      |+|+.+..     .+.++...+    .+.....  ...+++++||++|.|+.++
T Consensus       154 K~Dl~~~~-----~~~~~~i~~~~~~~l~~~g~~~~~~~~i~vSA~~g~nv~~~  202 (458)
T 1f60_A          154 KMDSVKWD-----ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNMIEA  202 (458)
T ss_dssp             CGGGGTTC-----HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTTTBC
T ss_pred             ccccccCC-----HHHHHHHHHHHHHHHHHcCCCccCceEEEeecccCcCcccc
Confidence            99997311     112222222    2222111  1368999999999998743

>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*

Probab=99.73  E-value=1.1e-17  Score=135.82  Aligned_cols=162  Identities=17%  Similarity=0.185  Sum_probs=102.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC---ee----------E----------------------------
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPG---KT----------Q----------------------------   76 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~---~t----------~----------------------------   76 (219)
                      ..++|+|+|++|+|||||+|+|++..+.+.......   +.          .                            
T Consensus        33 ~lp~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~  112 (360)
T 3t34_A           33 SLPAIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFAAVRKEIQDETD  112 (360)
T ss_dssp             CCCEEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHHHHHHHHHHHHH
T ss_pred             cCCEEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHHHHHHHHHHHHH
Confidence            456999999999999999999999754332221110   00          0                            


Q ss_pred             --------------EeeEEE-ecCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc-
Q 027757           77 --------------LINHFL-VNKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK-  137 (219)
Q Consensus        77 --------------~~~~~~-~~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-  137 (219)
                                    ...... ....+.+|||||+.....   .......+..+...|+..   +|++|+|+|+.+.... 
T Consensus       113 ~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~---~d~iilvv~~~~~~~~~  189 (360)
T 3t34_A          113 RETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEK---PNCIILAISPANQDLAT  189 (360)
T ss_dssp             HTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHS---SSEEEEEEEETTSCGGG
T ss_pred             HhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhc---CCeEEEEeecccCCcCC
Confidence                          000000 123689999999764321   233444556777888887   8999999987653322 


Q ss_pred             -ccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHH
Q 027757          138 -IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHM  210 (219)
Q Consensus       138 -~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l  210 (219)
                       ....+...+...+.|+++|+||+|+.+....      ..+..+..  ......+++.+++.++.++++.+.+.
T Consensus       190 ~~~~~l~~~~~~~~~~~i~V~nK~Dl~~~~~~------~~~~~~~~--~~~~~~~~~~v~~~s~~~i~~~~~~~  255 (360)
T 3t34_A          190 SDAIKISREVDPSGDRTFGVLTKIDLMDKGTD------AVEILEGR--SFKLKYPWVGVVNRSQADINKNVDMI  255 (360)
T ss_dssp             CHHHHHHHHSCTTCTTEEEEEECGGGCCTTCC------SHHHHTTS--SSCCSSCCEEECCCCHHHHHTTCCHH
T ss_pred             HHHHHHHHHhcccCCCEEEEEeCCccCCCccc------HHHHHcCc--cccccCCeEEEEECChHHhccCCCHH
Confidence             2245566677778899999999999864321      11111111  12234688999999988877655443

>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A

Probab=99.73  E-value=3.2e-17  Score=142.67  Aligned_cols=167  Identities=17%  Similarity=0.162  Sum_probs=112.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC--------------------------------------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKP--------------------------------------------   72 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~--------------------------------------------   72 (219)
                      ...|+|+|+|.+++|||||+|+|+|..+.+......                                            
T Consensus        49 i~lp~I~vvG~~saGKSSllnaL~g~~~LP~g~g~~Tr~Pl~l~l~~~~~~~~~~l~~~~~~~~~~~~v~~~I~~~~~~~  128 (772)
T 3zvr_A           49 LDLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRV  128 (772)
T ss_dssp             GCCSEEEEEECTTTCHHHHHHHHHSSCCSCCSSSCSCSSCEEEEEEECSSCEEECSTTTTCCBCCHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEECCCCCcHHHHHHHHhCCCccCcCCccccccceEEEeecCCcchhheeccCCcccCCHHHHHHHHHHHHhhh
Confidence            447899999999999999999999975432211100                                            


Q ss_pred             -----CeeEE---eeEEE-ecCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH
Q 027757           73 -----GKTQL---INHFL-VNKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL  140 (219)
Q Consensus        73 -----~~t~~---~~~~~-~~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~  140 (219)
                           +.+..   ...+. ...+++++||||+.....   .......+..+...|+.  ..+|++++|+|++.+....+.
T Consensus       129 ~g~~~~is~~~i~l~I~~P~~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~--~~aDlIL~VVDAs~~~~~~d~  206 (772)
T 3zvr_A          129 TGTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVT--KENCLILAVSPANSDLANSDA  206 (772)
T ss_dssp             HCSTTCCCSCCEEEEEEETTCCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHT--STTEEEEEEEETTSCSSSCHH
T ss_pred             cCCCCcccccceEEEEecCCCCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHh--cCCcEEEEEEcCCCCcchhHH
Confidence                 00000   00011 122689999999875321   12223456677777775  458999999999987776665


Q ss_pred             -HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC---CCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          141 -DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY---PHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       141 -~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                       .++.++...+.|+++|+||+|+.+....      ...+..  ...+   ....+++++||++|.|+++|++.+.+.
T Consensus       207 l~ll~~L~~~g~pvIlVlNKiDlv~~~~~------~~~il~--~~~~~l~lg~~~VV~iSA~~G~GvdeL~eaI~~e  275 (772)
T 3zvr_A          207 LKIAKEVDPQGQRTIGVITKLDLMDEGTD------ARDVLE--NKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE  275 (772)
T ss_dssp             HHHHHHHCTTCSSEEEEEECTTSSCTTCC------SHHHHT--TCSSCCSSCEEECCCCCCEESSSSEEHHHHHHHH
T ss_pred             HHHHHHHHhcCCCEEEEEeCcccCCcchh------hHHHHH--HHhhhhhccCCceEEecccccccchhHHHHHHHH
Confidence             6788888889999999999999864321      111111  1111   112467889999999999999998874

>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}

Probab=99.73  E-value=2.8e-19  Score=153.31  Aligned_cols=157  Identities=17%  Similarity=0.211  Sum_probs=88.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc------------------------------cCCCCeeEEeeEEE---e
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALT------------------------------SKKPGKTQLINHFL---V   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~------------------------------~~~~~~t~~~~~~~---~   83 (219)
                      ...++|+++|.+++|||||+++|++.. ....                              ...+++|.+.....   .
T Consensus       175 k~~~~I~iiG~~d~GKSTLi~~Ll~~~-~~i~~~~~~~~~~~~~~~g~~~~~~~~~~D~~~~E~~~GiTid~~~~~~~~~  253 (592)
T 3mca_A          175 KPVVHLVVTGHVDSGKSTMLGRIMFEL-GEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEERARGVTMDVASTTFESD  253 (592)
T ss_dssp             CCEEEEEEECCSSSTHHHHHHHHHHHH-HCC-------------------------------------------------
T ss_pred             CCccEEEEEcCCCCCHHHHHHHHHHHc-CCcchHHHHHHHHhHhhcCCcchhhhhhhccchhhhcCCeeEEeeEEEEEeC
Confidence            345789999999999999999997531 0000                              11334444433222   2


Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCCc-EEE
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNIP-LTF  155 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~ii  155 (219)
                      +..+.+|||||+.....             ........+|++|+|+|++++.       ..+..+.+..+...++| +++
T Consensus       254 ~~~i~iiDTPGh~~f~~-------------~~~~~~~~aD~alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lgip~iIv  320 (592)
T 3mca_A          254 KKIYEIGDAPGHRDFIS-------------GMIAGASSADFAVLVVDSSQNNFERGFLENGQTREHAYLLRALGISEIVV  320 (592)
T ss_dssp             -----CCEEESSSEEEE-------------ECCC-------CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSSCCCEEE
T ss_pred             CeEEEEEECCChHHHHH-------------HHHHHHhhCCEEEEEEECCCCccccccccchHHHHHHHHHHHcCCCeEEE
Confidence            34789999999752211             0111223389999999999754       45556666777777776 999


Q ss_pred             EEEcccccccccCCCchHhHHHHHHHHHhcC----CC---CCCeEEeecCCCCChH--------------HHHHHHHH
Q 027757          156 VFTKCDKMKVAKGRRPDENIKSFQQLIRENY----PH---HPPWIMTSSVTGLGRD--------------ELLLHMSQ  212 (219)
Q Consensus       156 v~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~---~~~~~~~Sa~~~~~v~--------------el~~~l~~  212 (219)
                      |+||+|+.+..     .+.++...+.+...+    +.   .++++++||++|.|+.              +|++.|.+
T Consensus       321 viNKiDl~~~~-----~~~~~~i~~el~~~l~~~~g~~~~~~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~  393 (592)
T 3mca_A          321 SVNKLDLMSWS-----EDRFQEIKNIVSDFLIKMVGFKTSNVHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQ  393 (592)
T ss_dssp             EEECGGGGTTC-----HHHHHHHHHHHHHHHTTTSCCCGGGEEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHT
T ss_pred             EEecccccccc-----HHHHHHHHHHHHHHHHHhhCCCccceEEEEEecccCcccccccccccccccchHHHHHHHHh
Confidence            99999987521     123333333333222    21   3579999999999998              67777754

>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...

Probab=99.72  E-value=1.4e-16  Score=139.01  Aligned_cols=116  Identities=16%  Similarity=0.137  Sum_probs=79.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--cc--ccccC------------CCCeeEEee---EEEecCeEEEEeCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK--EL--ALTSK------------KPGKTQLIN---HFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~--~~~~~------------~~~~t~~~~---~~~~~~~~~liDtpg~~~   97 (219)
                      ....+|+|+|.+|+|||||+++|+...  ..  .....            ..+.|....   ....+..+.+|||||+..
T Consensus        10 ~~~~~I~IvG~~~aGKTTL~~~Ll~~~g~~~~~g~v~~~~~~~d~~~~E~~~giTi~~~~~~~~~~~~~i~liDTPG~~d   89 (691)
T 1dar_A           10 KRLRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDTPGHVD   89 (691)
T ss_dssp             GGEEEEEEEECTTSCHHHHHHHHHHHHCC----------------------------CCEEEEEETTEEEEEECCCSSTT
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCCcccceecCCceeccCchhhhhcccccccceEEEEECCeEEEEEECcCccc
Confidence            446799999999999999999998421  00  00000            122222211   122244799999999742


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                                |......+++.   +|++|+|+|++++.+......+..+...++|+++|+||+|+...
T Consensus        90 ----------f~~~~~~~l~~---aD~~ilVvDa~~g~~~~t~~~~~~~~~~~~p~ivviNKiD~~~~  144 (691)
T 1dar_A           90 ----------FTIEVERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGA  144 (691)
T ss_dssp             ----------CHHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             ----------hHHHHHHHHHH---CCEEEEEEECCCCcchhhHHHHHHHHHcCCCEEEEEECCCcccC
Confidence                      23445566666   89999999999988888777777777889999999999998753

>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1

Probab=99.71  E-value=1.4e-16  Score=130.83  Aligned_cols=186  Identities=19%  Similarity=0.238  Sum_probs=112.5

Q ss_pred             ccccccccceeeeeccCCCCCCCCCC--------------CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEE-
Q 027757           13 YAGHSQIKEVEFVKSSGRAKDCPKDD--------------RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL-   77 (219)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~-   77 (219)
                      .++.....+..|..+..+.+......              ...|+|+|++|||||||+++|++..  ......+.+|.. 
T Consensus       117 ~GG~gG~Gn~~f~~~~~~~p~~~~~g~~g~~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~--~~i~~~~ftTl~p  194 (416)
T 1udx_A          117 RGGAGGRGNMHFVSPTRQAPRFAEAGEEGEKRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSP  194 (416)
T ss_dssp             CCCCCCCCGGGGCCSSCSSCCEEECCCCCCEEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSC--CEECCCTTCSSCC
T ss_pred             cCCCCCcccceeecccccCcccccCCCCceEeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCC--ccccCcccceecc
Confidence            34444555666655554444322221              2468999999999999999999963  233344443332 


Q ss_pred             -eeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-HHHHhcc-----
Q 027757           78 -INHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-CANWLGR-----  148 (219)
Q Consensus        78 -~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~~-----  148 (219)
                       ...+..+  ..+.++|+||+........      .+...+++..+.++.+++++|++ .....+.. ..+.+..     
T Consensus       195 ~~G~V~~~~~~~~~l~DtpGli~~a~~~~------~L~~~fl~~~era~~lL~vvDls-~~~~~~ls~g~~el~~la~aL  267 (416)
T 1udx_A          195 NLGVVEVSEEERFTLADIPGIIEGASEGK------GLGLEFLRHIARTRVLLYVLDAA-DEPLKTLETLRKEVGAYDPAL  267 (416)
T ss_dssp             EEEEEECSSSCEEEEEECCCCCCCGGGSC------CSCHHHHHHHTSSSEEEEEEETT-SCHHHHHHHHHHHHHHHCHHH
T ss_pred             eeeEEEecCcceEEEEeccccccchhhhh------hhhHHHHHHHHHHHhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHh
Confidence             2233333  4689999999743211100      01112333344589999999997 22222211 1111111     


Q ss_pred             CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       149 ~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ...|.++|+||+|+...       ...+.+.+.+..   ...+++++||+++.|+++++++|.+.+...
T Consensus       268 ~~~P~ILVlNKlDl~~~-------~~~~~l~~~l~~---~g~~vi~iSA~~g~gi~eL~~~i~~~l~~~  326 (416)
T 1udx_A          268 LRRPSLVALNKVDLLEE-------EAVKALADALAR---EGLAVLPVSALTGAGLPALKEALHALVRST  326 (416)
T ss_dssp             HHSCEEEEEECCTTSCH-------HHHHHHHHHHHT---TTSCEEECCTTTCTTHHHHHHHHHHHHHTS
T ss_pred             hcCCEEEEEECCChhhH-------HHHHHHHHHHHh---cCCeEEEEECCCccCHHHHHHHHHHHHHhc
Confidence            36899999999998753       234444444432   125899999999999999999999887653

>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A

Probab=99.71  E-value=1.6e-17  Score=139.03  Aligned_cols=158  Identities=18%  Similarity=0.232  Sum_probs=87.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--cc---------------------ccc------cCCCCeeEEeeE--EE-ec
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK--EL---------------------ALT------SKKPGKTQLINH--FL-VN   84 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~---------------------~~~------~~~~~~t~~~~~--~~-~~   84 (219)
                      ...++|+++|.+++|||||+++|+...  +.                     +..      ....+.|.....  +. .+
T Consensus        41 k~~~~i~iiG~vd~GKSTLi~~Ll~~~g~~~~~~~~~~~~~~~~~G~~~~~~~~~~D~~~~er~~giTi~~~~~~~~~~~  120 (467)
T 1r5b_A           41 KEHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEH  120 (467)
T ss_dssp             CEEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSS
T ss_pred             CCeeEEEEEECCCCCHHHHHHHHHHHhCCCChHHHHHHHhHHHhcCCcchhhhhhcccchhhhhcCceEEeeeEEEecCC
Confidence            345799999999999999999997521  10                     000      012233433321  22 23


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCCc-EEEE
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNIP-LTFV  156 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv  156 (219)
                      ..+.+|||||+..          |..   ........+|++|+|+|++++.       ..+..+.+..+...++| ++++
T Consensus       121 ~~~~iiDtPGh~~----------f~~---~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~vp~iivv  187 (467)
T 1r5b_A          121 RRFSLLDAPGHKG----------YVT---NMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVV  187 (467)
T ss_dssp             EEEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEE
T ss_pred             eEEEEEECCCcHH----------HHH---HHHhhcccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcCCCEEEEE
Confidence            4789999999632          222   2233344599999999999863       12345555556667887 9999


Q ss_pred             EEccccccccc-CCCchHhHHHHHHHHHhc--CC--CCCCeEEeecCCCCChHHHH
Q 027757          157 FTKCDKMKVAK-GRRPDENIKSFQQLIREN--YP--HHPPWIMTSSVTGLGRDELL  207 (219)
Q Consensus       157 ~nK~D~~~~~~-~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~Sa~~~~~v~el~  207 (219)
                      +||+|+..... .+......++..+.+...  +.  ..++++++||++|.|+++++
T Consensus       188 iNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~~~~~~~~~i~vSA~~g~~i~~l~  243 (467)
T 1r5b_A          188 INKMDEPSVQWSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  243 (467)
T ss_dssp             EECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EECccCCCccccHHHHHHHHHHHHHHHHHhcCCCccCCceEEeccccccccccccc
Confidence            99999964210 000011111222222222  11  13679999999999998754

>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}

Probab=99.71  E-value=1.5e-16  Score=135.30  Aligned_cols=127  Identities=18%  Similarity=0.220  Sum_probs=85.8

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccc-cccCCCCeeEEeeEEE--------------------------------
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELA-LTSKKPGKTQLINHFL--------------------------------   82 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~-~~~~~~~~t~~~~~~~--------------------------------   82 (219)
                      ....++|+|+|.+|+|||||+|+|++..... .+++.+.+++......                                
T Consensus        62 ~~~~~~V~vvG~~n~GKSTLIN~Llg~~~~~~~vs~~p~T~~~~~i~~~~~~~i~~g~~l~~~~~~~~~~L~~~g~~~~~  141 (550)
T 2qpt_A           62 FDGKPMVLVAGQYSTGKTSFIQYLLEQEVPGSRVGPEPTTDCFVAVMHGETEGTVPGNALVVDPEKPFRKLNPFGNTFLN  141 (550)
T ss_dssp             TSSCCEEEEEEBTTSCHHHHHHHHHTSCCSSCCCCSSCCCCSEEEEECCSSSEEECCC------------------CCCT
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHhCCccccCccCCCCccceEEEEEECCcccccCCceeeecCcccHHHHhhhcccccc
Confidence            3567899999999999999999999975321 3444444433211110                                


Q ss_pred             ------ec----CeEEEEeCCCCCCCCC-CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCC
Q 027757           83 ------VN----KSWYIVDLPGYGFAKA-PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNN  150 (219)
Q Consensus        83 ------~~----~~~~liDtpg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~  150 (219)
                            .+    ..+.+|||||+..... .......|......++..   +|++|+|+|+++. ........+..+...+
T Consensus       142 ~~~~~~~~~~ll~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~---aD~il~VvDa~~~~~~~~~~~~l~~l~~~~  218 (550)
T 2qpt_A          142 RFMCAQLPNQVLESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAER---VDLIILLFDAHKLEISDEFSEAIGALRGHE  218 (550)
T ss_dssp             TEEEEECCCHHHHHCEEEECCCBCC-------CCSCHHHHHHHHHHH---CSEEEEEEETTSCCCCHHHHHHHHHTTTCG
T ss_pred             cceEEeccccccCCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHh---CCEEEEEEeCCcCCCCHHHHHHHHHHHhcC
Confidence                  01    2589999999864211 111112255666677776   8999999999884 4445556677777778


Q ss_pred             CcEEEEEEccccccc
Q 027757          151 IPLTFVFTKCDKMKV  165 (219)
Q Consensus       151 ~p~iiv~nK~D~~~~  165 (219)
                      .|+++|+||+|+...
T Consensus       219 ~pvilVlNK~Dl~~~  233 (550)
T 2qpt_A          219 DKIRVVLNKADMVET  233 (550)
T ss_dssp             GGEEEEEECGGGSCH
T ss_pred             CCEEEEEECCCccCH
Confidence            999999999999864

>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*

Probab=99.71  E-value=9e-17  Score=136.02  Aligned_cols=115  Identities=17%  Similarity=0.164  Sum_probs=78.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc-cccc-------------c------cCCCCeeEEe---eEEEecCeEEEEeCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK-ELAL-------------T------SKKPGKTQLI---NHFLVNKSWYIVDLPG   94 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~-~~~~-------------~------~~~~~~t~~~---~~~~~~~~~~liDtpg   94 (219)
                      ...+|+|+|.+|+|||||+++|++.. ....             .      .+..+.+...   .....+..+.+|||||
T Consensus        12 ~~~~I~IiG~~~aGKTTL~~~Ll~~~g~i~~~g~v~~~~~~~~~~~D~~~~E~~rGiTi~~~~~~~~~~~~~i~liDTPG   91 (529)
T 2h5e_A           12 KRRTFAIISHPDAGKTTITEKVLLFGQAIQTAGTVKGRGSNQHAKSDWMEMEKQRGISITTSVMQFPYHDCLVNLLDTPG   91 (529)
T ss_dssp             TEEEEEEEECTTSSHHHHHHHHHHSCC-------------------------------CCTTEEEEEETTEEEEEECCCC
T ss_pred             CCCEEEEECCCCChHHHHHHHHHhhcCCccccceeecCccccceeeccchhcccCCcceeeeEEEEEECCeEEEEEECCC
Confidence            35799999999999999999999631 0100             0      0122222211   1122244799999999


Q ss_pred             CCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           95 YGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      +...          ......+++.   +|++|+|+|++++.......++..+...++|+++++||+|+...
T Consensus        92 ~~df----------~~~~~~~l~~---aD~~IlVvDa~~g~~~~t~~~~~~~~~~~ipiivviNK~Dl~~~  149 (529)
T 2h5e_A           92 HEDF----------SEDTYRTLTA---VDCCLMVIDAAKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDIR  149 (529)
T ss_dssp             STTC----------CHHHHHGGGG---CSEEEEEEETTTCSCHHHHHHHHHHTTTTCCEEEEEECTTSCCS
T ss_pred             ChhH----------HHHHHHHHHH---CCEEEEEEeCCccchHHHHHHHHHHHHcCCCEEEEEcCcCCccc
Confidence            7422          1233445555   89999999999987777777777777789999999999998653

>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H

Probab=99.70  E-value=5e-16  Score=135.61  Aligned_cols=116  Identities=16%  Similarity=0.115  Sum_probs=81.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--ccc--cc------cC------CCCeeEEee---EEEec-------CeEEEE
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK--ELA--LT------SK------KPGKTQLIN---HFLVN-------KSWYIV   90 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~~--~~------~~------~~~~t~~~~---~~~~~-------~~~~li   90 (219)
                      ....+|+|+|..|+|||||+++|+...  ...  ..      ..      ..+.|....   ..+.+       ..+.+|
T Consensus         8 ~~~~~I~IiG~~~~GKTTL~~~Ll~~~g~~~~~g~v~~g~~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~li   87 (704)
T 2rdo_7            8 ARYRNIGISAHIDAGKTTTTERILFYTGVNHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINII   87 (704)
T ss_pred             ccccEEEEECCCCCCHHHHHHHHHHhcCCcccccccCCCceeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEE
Confidence            457899999999999999999997531  100  00      00      123333221   11222       578999


Q ss_pred             eCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           91 DLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        91 Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      ||||+..          |......+++.   +|++|+|+|++++...+....++.+...++|+++|+||+|+...
T Consensus        88 DTPG~~d----------f~~~~~~~l~~---aD~aIlVvDa~~gv~~qt~~~~~~~~~~~ip~ilviNKiD~~~~  149 (704)
T 2rdo_7           88 DTPGHVD----------FTIEVERSMRV---LDGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRMGA  149 (704)
T ss_pred             eCCCccc----------hHHHHHHHHHH---CCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCEEEEEeCCCcccc
Confidence            9999642          23444556666   89999999999988777777777777789999999999998653

>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}

Probab=99.70  E-value=1.6e-16  Score=138.65  Aligned_cols=117  Identities=15%  Similarity=0.101  Sum_probs=80.1

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCc--ccc--c------ccC------CCCeeEEee---EEEecCeEEEEeCCCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKK--ELA--L------TSK------KPGKTQLIN---HFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~--~~~--~------~~~------~~~~t~~~~---~~~~~~~~~liDtpg~~   96 (219)
                      .....+|+|+|.+|+|||||+|+|++..  ...  .      ...      ..++|....   ....+..+.+|||||+.
T Consensus         7 ~~~~~~I~IvG~~~aGKSTL~~~Ll~~~~~~~~~g~v~~~~~~~D~~~~e~~~giTi~~~~~~~~~~~~~i~liDTPG~~   86 (693)
T 2xex_A            7 LEKTRNIGIMAHIDAGKTTTTERILYYTGRIHKIGETHEGASQMDWMEQEQDRGITITSAATTAAWEGHRVNIIDTPGHV   86 (693)
T ss_dssp             STTEEEEEEECCGGGTHHHHHHHHHHHHSSCC-------------------------CCSEEEEEETTEEEEEECCCCCS
T ss_pred             cccceEEEEECCCCCCHHHHHHHHHHhcCCccccccccCCceecccchhhhhcCceEeeeeEEEEECCeeEEEEECcCCc
Confidence            3456899999999999999999999521  110  0      000      122222211   12224479999999975


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      ..          ......+++.   +|++|+|+|++++.+..+...+..+...++|+++|+||+|+...
T Consensus        87 df----------~~~~~~~l~~---aD~~llVvDa~~g~~~~~~~~~~~~~~~~~p~ilviNK~Dl~~~  142 (693)
T 2xex_A           87 DF----------TVEVERSLRV---LDGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGA  142 (693)
T ss_dssp             SC----------CHHHHHHHHH---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSTTC
T ss_pred             ch----------HHHHHHHHHH---CCEEEEEECCCCCCcHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence            32          2233455555   89999999999988888777777788889999999999998753

>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}

Probab=99.70  E-value=6.1e-17  Score=130.72  Aligned_cols=156  Identities=15%  Similarity=0.142  Sum_probs=88.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCC-------------------------------------e
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPG-------------------------------------K   74 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~-------------------------------------~   74 (219)
                      ...+.|+|+|++|||||||+|+|++..     ........++                                     +
T Consensus        72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~~~~~g~~l~d~~rm~~~~~~~~~~v~~~~~~~~lgg~  151 (349)
T 2www_A           72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSSCTSGGSLLGDKTRMTELSRDMNAYIRPSPTRGTLGGV  151 (349)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC----------------CCSTTCTTEEEECC---------
T ss_pred             cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCCCCcCcchhchHHHHHHhcCCCCEEEEecCCccccccc
Confidence            346789999999999999999999731     0111111111                                     1


Q ss_pred             eEEeeE-----EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC
Q 027757           75 TQLINH-----FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN  149 (219)
Q Consensus        75 t~~~~~-----~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  149 (219)
                      +.....     ...+..++++||||+....             ....   +.+|++++|+|++.+......  ...+  .
T Consensus       152 tr~~~~~~~~~~~~~~~~iliDT~Gi~~~~-------------~~l~---~~~d~vl~V~d~~~~~~~~~i--~~~i--l  211 (349)
T 2www_A          152 TRTTNEAILLCEGAGYDIILIETVGVGQSE-------------FAVA---DMVDMFVLLLPPAGGDELQGI--KRGI--I  211 (349)
T ss_dssp             CTTHHHHHHHHHHTTCSEEEEECCCC--CH-------------HHHH---TTCSEEEEEECCC----------------C
T ss_pred             hHHHHHHHHhhccCCCCEEEEECCCcchhh-------------hhHH---hhCCEEEEEEcCCcchhHHHh--HHHH--H
Confidence            110000     0123478999999975220             1112   238999999999875432211  1111  3


Q ss_pred             CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +.|.++|+||+|+.+....   ......+...+....    ...++++++||+++.|+++++++|.+.+.
T Consensus       212 ~~~~ivVlNK~Dl~~~~~~---~~~~~~l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~  278 (349)
T 2www_A          212 EMADLVAVTKSDGDLIVPA---RRIQAEYVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQD  278 (349)
T ss_dssp             CSCSEEEECCCSGGGHHHH---HHHHHHHHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             hcCCEEEEeeecCCCchhH---HHHHHHHHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHH
Confidence            5688999999998753100   011222322222111    12357899999999999999999988764

>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2

Probab=99.69  E-value=2.7e-17  Score=134.64  Aligned_cols=87  Identities=18%  Similarity=0.180  Sum_probs=46.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-----------------------e----cCeEEEEeC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-----------------------V----NKSWYIVDL   92 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-----------------------~----~~~~~liDt   92 (219)
                      ++|+|+|.+|+|||||+|+|++..  ...++.+++|.......                       .    ..++.++||
T Consensus         1 ~kI~ivG~pnvGKSTL~n~L~~~~--~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDt   78 (397)
T 1wxq_A            1 MEIGVVGKPNVGKSTFFSAATLVD--VEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (397)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEEC
Confidence            489999999999999999999974  55666666665432221                       0    136899999


Q ss_pred             CCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC
Q 027757           93 PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP  134 (219)
Q Consensus        93 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~  134 (219)
                      ||+.....      ..+.+...++...+.+|++++|+|+++.
T Consensus        79 pG~~~~a~------~~~~l~~~~l~~i~~aD~il~VvD~~~~  114 (397)
T 1wxq_A           79 AGLVPGAH------EGRGLGNKFLDDLRMASALIHVVDATGK  114 (397)
T ss_dssp             C---------------------CCCSSTTCSEEEEEEETTCC
T ss_pred             CCcccchh------hhhhHHHHHHHHHhcCCEEEEEEecccc
Confidence            99753211      1123444555555669999999999875

>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*

Probab=99.69  E-value=6.1e-16  Score=134.45  Aligned_cols=113  Identities=23%  Similarity=0.273  Sum_probs=79.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc----ccc------cC------CCCeeE---EeeEEEecCeEEEEeCCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKEL----ALT------SK------KPGKTQ---LINHFLVNKSWYIVDLPGYGFA   98 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~----~~~------~~------~~~~t~---~~~~~~~~~~~~liDtpg~~~~   98 (219)
                      ...+|+|+|+.|+|||||+++|++....    ...      ..      ..+.+.   ..........+.++||||+.  
T Consensus         8 ~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDTpG~~--   85 (665)
T 2dy1_A            8 MIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYG--   85 (665)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSG--
T ss_pred             CCcEEEEECCCCChHHHHHHHHHHhcCCCCccceecCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeCCCcc--
Confidence            3568999999999999999999953211    000      00      011121   12222234478999999963  


Q ss_pred             CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                              .|......+++.   +|++++|+|+.++........+..+...++|+++++||+|+.
T Consensus        86 --------~f~~~~~~~l~~---ad~~ilVvD~~~g~~~qt~~~~~~~~~~~ip~ilv~NKiD~~  139 (665)
T 2dy1_A           86 --------DFVGEIRGALEA---ADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  139 (665)
T ss_dssp             --------GGHHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             --------chHHHHHHHHhh---cCcEEEEEcCCcccchhHHHHHHHHHHccCCEEEEecCCchh
Confidence                    234455666666   899999999999887777777777777899999999999986

>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}

Probab=99.68  E-value=7.5e-17  Score=119.34  Aligned_cols=115  Identities=22%  Similarity=0.318  Sum_probs=70.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccc-cCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALT-SKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ...++|+++|++|+|||||+++|++..+.... ...++++...    ....+.+|||||.....      ..+.......
T Consensus        46 ~~~~~i~vvG~~g~GKSsll~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~l~Dt~G~~~~~------~~~~~~~~~~  115 (193)
T 2ged_A           46 SYQPSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAADY----DGSGVTLVDFPGHVKLR------YKLSDYLKTR  115 (193)
T ss_dssp             CCCCEEEEECCTTSSHHHHHHHHHHSSCC------------CC----CCTTCSEEEETTCCBSS------CCHHHHHHHH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhcCCCCcccccCCCceeeee----cCCeEEEEECCCCchHH------HHHHHHHHhh
Confidence            55789999999999999999999997432211 1111111111    34578899999974321      1112222222


Q ss_pred             hhccCCccEEEEEEeCC-CCCCcccHHHHHHhc----------cCCCcEEEEEEcccccccc
Q 027757          116 FLNRESLVGVLLLIDAS-VPPQKIDLDCANWLG----------RNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~  166 (219)
                      .   ..+|++|+|+|++ +..+...  ...|+.          ..+.|+++|+||+|+....
T Consensus       116 ~---~~~~~~i~v~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~  172 (193)
T 2ged_A          116 A---KFVKGLIFMVDSTVDPKKLTT--TAEFLVDILSITESSCENGIDILIACNKSELFTAR  172 (193)
T ss_dssp             G---GGEEEEEEEEETTCCHHHHHH--HHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             c---ccCCEEEEEEECCCCchhHHH--HHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence            2   2379999999998 4333222  122221          2489999999999998653

>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*

Probab=99.68  E-value=1.6e-16  Score=135.11  Aligned_cols=114  Identities=17%  Similarity=0.229  Sum_probs=79.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc--------------------ccccccCCCCeeE---EeeEEEecCeEEEEeCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK--------------------ELALTSKKPGKTQ---LINHFLVNKSWYIVDLPGY   95 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~--------------------~~~~~~~~~~~t~---~~~~~~~~~~~~liDtpg~   95 (219)
                      +.+|+|+|..++|||||..+|+...                    +........+.|.   .....+.+..+.++||||+
T Consensus        31 ~RNiaIiaHvdaGKTTLtE~lL~~tG~i~~~G~V~~~~~~~~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH  110 (548)
T 3vqt_A           31 RRTFAIISHPDAGKTTLTEKLLLFGGAIQMAGSVKARKAARHATSDWMAMERERGISVTTSVMQFPYRDRVVNLLDTPGH  110 (548)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHHTTCHHHHHHHHHC--------------------CTTTEEEEEETTEEEEEECCCCG
T ss_pred             cceEEEEeCCCCCHHHHHHHHHHhcCcccccceeecCccccccccCChHHHHHCCCcEeeceEEEEECCEEEEEEeCCCc
Confidence            5679999999999999999997321                    0000111112222   1233344568999999997


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      .++.             ....+....+|++|+|+|+.++...+...+++++.+.++|.++++||+|....
T Consensus       111 vDF~-------------~Ev~raL~~~DgAvlVvda~~GV~~qT~~v~~~a~~~~lp~i~fINK~Dr~~a  167 (548)
T 3vqt_A          111 QDFS-------------EDTYRVLTAVDSALVVIDAAKGVEAQTRKLMDVCRMRATPVMTFVNKMDREAL  167 (548)
T ss_dssp             GGCS-------------HHHHHHHHSCSEEEEEEETTTBSCHHHHHHHHHHHHTTCCEEEEEECTTSCCC
T ss_pred             HHHH-------------HHHHHHHHhcCceEEEeecCCCcccccHHHHHHHHHhCCceEEEEecccchhc
Confidence            5331             22223333489999999999999999999999999999999999999998653

>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*

Probab=99.66  E-value=1.6e-16  Score=125.77  Aligned_cols=173  Identities=18%  Similarity=0.164  Sum_probs=80.6

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC-cccccccC------CCCeeEE-eeEEE----ecCeEEEEeCCCCCCCCCC--
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRK-KELALTSK------KPGKTQL-INHFL----VNKSWYIVDLPGYGFAKAP--  101 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~-~~~~~~~~------~~~~t~~-~~~~~----~~~~~~liDtpg~~~~~~~--  101 (219)
                      ....++|+|+|++|+|||||+++|++. .+.....+      ..+.... .....    ....+.++||+|+......  
T Consensus        15 ~~~~~~I~lvG~nG~GKSTLl~~L~g~~~~~~~gi~~~g~~~~~t~~~~~~~~~~q~~~~~~~ltv~Dt~g~~~~~~~~e   94 (301)
T 2qnr_A           15 KGFEFTLMVVGESGLGKSTLINSLFLTDLYPERVISGAAEKIERTVQIEASTVEIEERGVKLRLTVVDTPGYGDAINCRD   94 (301)
T ss_dssp             ---CEEEEEEEETTSSHHHHHHHHHC------------------------CEEEEC---CCEEEEEEEEC----------
T ss_pred             cCCCEEEEEECCCCCCHHHHHHHHhCCCccCCCCcccCCcccCCcceEeeEEEEecCCCcccCcchhhhhhhhhhcCcHH
Confidence            455689999999999999999999885 22111100      0111111 11111    1236899999997432110  


Q ss_pred             --cchhhhHHHHHHHHhhccC----------CccEEEEEEeCCCC-CCcccHHHHHHhccCCCcEEEEEEcccccccccC
Q 027757          102 --DVTRMDWSSFTKGYFLNRE----------SLVGVLLLIDASVP-PQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKG  168 (219)
Q Consensus       102 --~~~~~~~~~~~~~~~~~~~----------~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~  168 (219)
                        ...........+.+++...          .+++++++.+++.. ....+.++++.+. .+.|+++|+||.|+....+.
T Consensus        95 ~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l~-~~~~iilV~~K~Dl~~~~e~  173 (301)
T 2qnr_A           95 CFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAIH-NKVNIVPVIAKADTLTLKER  173 (301)
T ss_dssp             -CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHHT-TTSCEEEEECCGGGSCHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHHH-hcCCEEEEEEeCCCCCHHHH
Confidence              0000001111224444321          13457777776542 4443344455544 36799999999999764221


Q ss_pred             CCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          169 RRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ....+   +..+.+.. .  .++++++||+++ |++++|.++.+.+..
T Consensus       174 ~~~~~---~~~~~~~~-~--~~~~~e~Sa~~~-~v~e~f~~l~~~i~~  214 (301)
T 2qnr_A          174 ERLKK---RILDEIEE-H--NIKIYHLPDAES-DEDEDFKEQTRLLKA  214 (301)
T ss_dssp             HHHHH---HHHHHHHH-T--TCCCCCCC----------CHHHHHHHHT
T ss_pred             HHHHH---HHHHHHHH-c--CCeEEecCCccc-cccHHHHHHHHHhhc
Confidence            11111   22222222 2  268999999999 999999998876643

>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*

Probab=99.65  E-value=1.6e-15  Score=118.27  Aligned_cols=124  Identities=15%  Similarity=0.173  Sum_probs=77.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|.+|+|||||+|+|++.. .....+..+++......   ..+..+.+|||||+.....  .....++.+ ..
T Consensus        38 ~~~~I~vvG~~g~GKSSLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~l~iiDTpG~~~~~~--~~~~~~~~i-~~  113 (270)
T 1h65_A           38 NSLTILVMGKGGVGKSSTVNSIIGER-VVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGY--INDMALNII-KS  113 (270)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTSC-CSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTE--ECHHHHHHH-HH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHhCCC-cccccCCCCcceeeEEEEEeeCCeEEEEEECCCCCCCcc--chHHHHHHH-HH
Confidence            36899999999999999999999974 44445555555432222   2233799999999753321  111112222 22


Q ss_pred             HhhccCCccEEEEEEeCCCC-CCcccHHHHHHhcc---CC--CcEEEEEEcccccccc
Q 027757          115 YFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGR---NN--IPLTFVFTKCDKMKVA  166 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~---~~--~p~iiv~nK~D~~~~~  166 (219)
                      ++. ...+|++++|+|++.. ....+...++.+..   .+  .|+++|+||+|+.+.+
T Consensus       114 ~~~-~~~~d~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~  170 (270)
T 1h65_A          114 FLL-DKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  170 (270)
T ss_dssp             HTT-TCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             Hhh-cCCCCEEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence            221 2348999999988653 22233344444432   11  6999999999987653

>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*

Probab=99.65  E-value=6.4e-16  Score=120.08  Aligned_cols=123  Identities=17%  Similarity=0.166  Sum_probs=77.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+++|.+|+|||||+|+|++.. .....+..+++.....  ... +..+.+|||||+....  ......++.+.. 
T Consensus        35 ~~~~I~lvG~~g~GKSSLin~l~~~~-~~~~~~~~~~t~~~~~~~~~~~~~~l~liDTpG~~~~~--~~~~~~~~~i~~-  110 (262)
T 3def_A           35 NSMTVLVLGKGGVGKSSTVNSLIGEQ-VVRVSPFQAEGLRPVMVSRTMGGFTINIIDTPGLVEAG--YVNHQALELIKG-  110 (262)
T ss_dssp             CEEEEEEEECTTSSHHHHHHHHHTSC-CSCCCSSCC-CCCCEEEEEEETTEEEEEEECCCSEETT--EECHHHHHHHHH-
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCC-CcccCCCCCcceeeEEEEEEECCeeEEEEECCCCCCcc--cchHHHHHHHHH-
Confidence            46899999999999999999999974 4444555554443222  222 3479999999975332  112222222322 


Q ss_pred             HhhccCCccEEEEEEeCCCCC-CcccHHHHHHhcc---C--CCcEEEEEEccccccc
Q 027757          115 YFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGR---N--NIPLTFVFTKCDKMKV  165 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~---~--~~p~iiv~nK~D~~~~  165 (219)
                      ++. ...+|++++|++++... ...+...++++..   .  ..|+++|+||+|+.+.
T Consensus       111 ~l~-~~~~~~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~~  166 (262)
T 3def_A          111 FLV-NRTIDVLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSPP  166 (262)
T ss_dssp             HTT-TCEECEEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCCS
T ss_pred             HHh-cCCCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCCC
Confidence            221 23489999999887533 2223344555543   1  2499999999998643

>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}

Probab=99.64  E-value=2.6e-16  Score=118.98  Aligned_cols=154  Identities=11%  Similarity=0.066  Sum_probs=91.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcc----cccccCCCCeeE-------------EeeE----------------EEec
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKE----LALTSKKPGKTQ-------------LINH----------------FLVN   84 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~----~~~~~~~~~~t~-------------~~~~----------------~~~~   84 (219)
                      ..++|+++|.+|+|||||+++|++...    .+.....++.+.             ....                ...+
T Consensus        29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  108 (221)
T 2wsm_A           29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGDVVSKADYERVRRFGIKAEAISTGKECHLDAHMIYHRLKKFSD  108 (221)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECSCCCHHHHHHHHTTTCEEEECCCTTCSSCCHHHHHTTGGGGTT
T ss_pred             CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecCCCCchhHHHHHhCCCcEEEecCCceeecccHHHHHHHHhcCC
Confidence            457999999999999999999997521    111112222110             0000                0012


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..+.++||+|...    ..+          ++.  ...+.+++|+|+.++....    ..+....+.|.++|+||+|+.+
T Consensus       109 ~d~iiidt~G~~~----~~~----------~~~--~~~~~~i~vvd~~~~~~~~----~~~~~~~~~~~iiv~NK~Dl~~  168 (221)
T 2wsm_A          109 CDLLLIENVGNLI----CPV----------DFD--LGENYRVVMVSVTEGDDVV----EKHPEIFRVADLIVINKVALAE  168 (221)
T ss_dssp             CSEEEEEEEEBSS----GGG----------GCC--CSCSEEEEEEEGGGCTTHH----HHCHHHHHTCSEEEEECGGGHH
T ss_pred             CCEEEEeCCCCCC----CCc----------hhc--cccCcEEEEEeCCCcchhh----hhhhhhhhcCCEEEEecccCCc
Confidence            3577788877310    000          110  1257899999998764321    2222224689999999999865


Q ss_pred             cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ...  .   ..++..+.+... +...+++++||++|.|+++++++|.+.+..+
T Consensus       169 ~~~--~---~~~~~~~~~~~~-~~~~~i~~~Sa~~g~gi~~l~~~l~~~~~~~  215 (221)
T 2wsm_A          169 AVG--A---DVEKMKADAKLI-NPRAKIIEMDLKTGKGFEEWIDFLRGILNVH  215 (221)
T ss_dssp             HHT--C---CHHHHHHHHHHH-CTTSEEEECBTTTTBTHHHHHHHHHHHHC--
T ss_pred             chh--h---HHHHHHHHHHHh-CCCCeEEEeecCCCCCHHHHHHHHHHHHHHH
Confidence            311  1   223333333322 2336899999999999999999998876554

>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10

Probab=99.64  E-value=5.6e-16  Score=124.80  Aligned_cols=156  Identities=14%  Similarity=0.122  Sum_probs=88.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeEE---------------------eeEE---------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQL---------------------INHF---------   81 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~~---------------------~~~~---------   81 (219)
                      .....|+++|++|+|||||++.|.+..     ........++++..                     +...         
T Consensus        54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~~~~~~~~il~d~~~~~~~~~~~~~~i~~~~~~~~l~g~  133 (341)
T 2p67_A           54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  133 (341)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCCcCCCCcceecccchHHhhccCCCceeecCccccccchh
Confidence            345789999999999999999997531     11111111111110                     0000         


Q ss_pred             ------------EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC
Q 027757           82 ------------LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN  149 (219)
Q Consensus        82 ------------~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~  149 (219)
                                  ..+.++.++||||+....             ....   ..+|++++|+|++.+........  .  ..
T Consensus       134 ~~~~~~~~~~~~~~~~~i~liDTpG~~~~~-------------~~~~---~~aD~vl~Vvd~~~~~~~~~l~~--~--~~  193 (341)
T 2p67_A          134 SQRARELMLLCEAAGYDVVIVETVGVGQSE-------------TEVA---RMVDCFISLQIAGGGDDLQGIKK--G--LM  193 (341)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCTTHH-------------HHHH---TTCSEEEEEECC------CCCCH--H--HH
T ss_pred             HHHHHHHHHHhhccCCCEEEEeCCCccchH-------------HHHH---HhCCEEEEEEeCCccHHHHHHHH--h--hh
Confidence                        114579999999975210             1112   34899999999976533211110  0  12


Q ss_pred             CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC----CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP----HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +.|.++|+||+|+.....   .....+++...+.....    ..++++++||++|.|+++++++|.+.+.
T Consensus       194 ~~p~ivv~NK~Dl~~~~~---~~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~gi~~L~~~l~~~~~  260 (341)
T 2p67_A          194 EVADLIVINKDDGDNHTN---VAIARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKT  260 (341)
T ss_dssp             HHCSEEEECCCCTTCHHH---HHHHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHH
T ss_pred             cccCEEEEECCCCCChHH---HHHHHHHHHHHHHhccccccCCCCcEEEeeCCCCCCHHHHHHHHHHHHH
Confidence            468899999999875310   01111122222222111    1357899999999999999999988664

>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.62  E-value=2.9e-15  Score=123.05  Aligned_cols=169  Identities=18%  Similarity=0.232  Sum_probs=78.9

Q ss_pred             CCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCC-----CCeeE-E-eeEE-E---ecCeEEEEeCCCCCCCCCCc
Q 027757           34 CPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKK-----PGKTQ-L-INHF-L---VNKSWYIVDLPGYGFAKAPD  102 (219)
Q Consensus        34 ~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~-----~~~t~-~-~~~~-~---~~~~~~liDtpg~~~~~~~~  102 (219)
                      ...+..++|+|+|++|+|||||+|.|++..+.......     ..+.. . .... .   ....+.++||+|+...... 
T Consensus        26 vl~~vsf~I~lvG~sGaGKSTLln~L~g~~~~~~~~~~~~~~~~~t~~~~~i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~-  104 (418)
T 2qag_C           26 VKRGFEFTLMVVGESGLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEGGVQLLLTIVDTPGFGDAVDN-  104 (418)
T ss_dssp             CC-CCCEEEEEECCTTSSHHHHHHHHTTCCCCCCCCCSCC-----CCEEEEEECC------CEEEEEEECC---------
T ss_pred             EecCCCEEEEEECCCCCcHHHHHHHHhCCCCCCCCCCCcccCCccceeeeeEEEEEecCCcccceeeeechhhhhhccc-
Confidence            34456788999999999999999999997432111100     11111 1 1111 1   1125789999998643211 


Q ss_pred             chhhhHHHH-------HHHHhhc----------cCCccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          103 VTRMDWSSF-------TKGYFLN----------RESLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       103 ~~~~~~~~~-------~~~~~~~----------~~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                        ...|..+       ...++..          ...+|+++|+++++ ......+...++.+.. ++|+++|+||+|+..
T Consensus       105 --~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~~-~v~iIlVinK~Dll~  181 (418)
T 2qag_C          105 --SNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLT  181 (418)
T ss_dssp             -----CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHTT-TSEEEEEEESTTSSC
T ss_pred             --hhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHhc-cCcEEEEEEcccCcc
Confidence              1111221       1222211          12245677887776 4555555556666664 899999999999876


Q ss_pred             cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      ..+.....   +...+.+...   .++++++|++++.++++++..+.+
T Consensus       182 ~~ev~~~k---~~i~~~~~~~---~i~~~~~sa~~~~~v~~~~~~l~~  223 (418)
T 2qag_C          182 PEECQQFK---KQIMKEIQEH---KIKIYEFPETDDEEENKLVKKIKD  223 (418)
T ss_dssp             HHHHHHHH---HHHHHHHHHH---TCCCCCCC----------------
T ss_pred             HHHHHHHH---HHHHHHHHHc---CCeEEeCCCCCCcCHHHHHHHHHh
Confidence            43211111   1222222222   268899999999999988776654

>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*

Probab=99.61  E-value=5.2e-15  Score=114.73  Aligned_cols=124  Identities=14%  Similarity=0.050  Sum_probs=70.5

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH-H----HHHhccCCCcEEEEEEc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD-C----ANWLGRNNIPLTFVFTK  159 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~----~~~~~~~~~p~iiv~nK  159 (219)
                      ..++++||||....       ..+..+.......... +++|+++|+.......+.. .    .......+.|+++|+||
T Consensus       109 ~d~iiiDtpG~~~~-------~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK  180 (262)
T 1yrb_A          109 NDYVLIDTPGQMET-------FLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNK  180 (262)
T ss_dssp             CSEEEEECCSSHHH-------HHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECC
T ss_pred             CCEEEEeCCCccch-------hhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEec
Confidence            47999999995311       0001111112222244 8899999987655443321 1    12223357899999999


Q ss_pred             ccccccccCCCchH---hHHHHHHHH-----------------HhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          160 CDKMKVAKGRRPDE---NIKSFQQLI-----------------RENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       160 ~D~~~~~~~~~~~~---~~~~~~~~~-----------------~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +|+..........+   +.+.+.+.+                 ...+....+++++||+++.|+++++++|.+.+..
T Consensus       181 ~D~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~~i~~~~~~  257 (262)
T 1yrb_A          181 VDLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLETLAYEHYCT  257 (262)
T ss_dssp             GGGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHHHHHHHhcc
Confidence            99875421000000   111111111                 0112233588999999999999999999887654

>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}

Probab=99.60  E-value=4.7e-16  Score=134.56  Aligned_cols=114  Identities=23%  Similarity=0.228  Sum_probs=81.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc--c--cccc------cCC------CCeeEE---eeEEEecCeEEEEeCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK--E--LALT------SKK------PGKTQL---INHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~--~--~~~~------~~~------~~~t~~---~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      +.+|+|+|..++|||||..+|+...  .  ....      ...      .+.|..   ....+.+..+.++||||+.++ 
T Consensus         2 IRNi~IiaHvD~GKTTL~e~LL~~~G~i~~~g~v~~g~~~~D~~~~EreRGITI~s~~~~~~~~~~~iNlIDTPGH~DF-   80 (638)
T 3j25_A            2 IINIGVLAHVDAGKTTLTESLLYNSGAITELGSVDKGTTRTDNTLLERQRGITIQTGITSFQWENTKVNIIDTPGHMDF-   80 (638)
T ss_dssp             CCCCEEECCSTTSSHHHHHHHHHHHTCCSSCSSCCCSCCSTTCSTTHHHHSSCSSCCCCCCBCSSCBCCCEECCCSSST-
T ss_pred             eeEEEEEcCCCCCHHHHHHHHHHHcCCCccccccccCCcccCCcHHHHhCCCcEEeeeEEEEECCEEEEEEECCCcHHH-
Confidence            4579999999999999999997431  0  0000      000      011111   122334568999999997532 


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                                  .....+....+|++|+|+|+.++...+...+++++.+.++|.++++||+|....
T Consensus        81 ------------~~Ev~raL~~~DgavlVVDa~~GV~~qT~~v~~~a~~~~lp~i~~INKmDr~~a  134 (638)
T 3j25_A           81 ------------LAEVYRSLSVLDGAILLISAKDGVQAQTRILFHALRKMGIPTIFFINKIDQNGI  134 (638)
T ss_dssp             ------------HHHHHHHHTTCSEEECCEESSCTTCSHHHHHHHHHHHHTCSCEECCEECCSSSC
T ss_pred             ------------HHHHHHHHHHhCEEEEEEeCCCCCcHHHHHHHHHHHHcCCCeEEEEeccccccC
Confidence                        233334445599999999999999999999999999999999999999997643

>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}

Probab=99.59  E-value=8.6e-15  Score=118.47  Aligned_cols=119  Identities=18%  Similarity=0.180  Sum_probs=79.5

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--Ee-cCeEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--LV-NKSWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      .+.+..+|+|+|.||+|||||+|+|++..  ....+.+++|.++...  .. +.++.++||||+......  +..    .
T Consensus        68 ~k~g~a~V~ivG~PNvGKSTL~n~Lt~~~--~~v~~~pftT~~~~~g~~~~~~~~i~l~D~pGl~~~a~~--~~~----~  139 (376)
T 4a9a_A           68 ARTGVASVGFVGFPSVGKSTLLSKLTGTE--SEAAEYEFTTLVTVPGVIRYKGAKIQMLDLPGIIDGAKD--GRG----R  139 (376)
T ss_dssp             CBCSSEEEEEECCCCHHHHHHHHHHHSBC--CCGGGTCSSCCCEEEEEEEETTEEEEEEECGGGCCC-------C----H
T ss_pred             eecCCCeEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeeeeeEEEEeCCcEEEEEeCCCccCCchh--hhH----H
Confidence            34667799999999999999999999963  6678888888865433  33 347999999997543222  221    2


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccc
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDK  162 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~  162 (219)
                      ...++...+.+|++++|+|++++....+. +...+.     -.+.|.++++||.|.
T Consensus       140 g~~~l~~i~~ad~il~vvD~~~p~~~~~~-i~~EL~~~~~~l~~k~~~i~~nK~d~  194 (376)
T 4a9a_A          140 GKQVIAVARTCNLLFIILDVNKPLHHKQI-IEKELEGVGIRLNKTPPDILIKKKEK  194 (376)
T ss_dssp             HHHHHHHHHHCSEEEEEEETTSHHHHHHH-HHHHHHHTTEEETCCCCCEEEEECSS
T ss_pred             HHHHHHHHHhcCccccccccCccHHHHHH-HHHHHHHhhHhhccCChhhhhhHhhh
Confidence            23344444458999999999976433221 111111     146788888999885

>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}

Probab=99.56  E-value=2.9e-14  Score=124.91  Aligned_cols=115  Identities=15%  Similarity=0.131  Sum_probs=78.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcc----ccc------c------cCCCCeeEEe---eEEEe-------cCeEEEE
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKE----LAL------T------SKKPGKTQLI---NHFLV-------NKSWYIV   90 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~----~~~------~------~~~~~~t~~~---~~~~~-------~~~~~li   90 (219)
                      ++..+|+|+|..++|||||..+|+...-    ...      +      ....+.|...   ...+.       +..+.++
T Consensus        11 ~~IRNi~IiaHvd~GKTTL~d~LL~~~g~i~~~g~v~~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlI   90 (709)
T 4fn5_A           11 NRYRNIGICAHVDAGKTTTTERVLFYTGVNHKLGEVHDGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVI   90 (709)
T ss_dssp             GGEEEEEEECCSSSCHHHHHHHHHHHHHHHHHC------------------------CCEEEEEECCTTSCSCCEEEEEE
T ss_pred             HHCeEEEEEcCCCCCHHHHHHHHHHhcCCCCcCceecCCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEE
Confidence            4456899999999999999999984320    000      0      1111222211   11221       2368999


Q ss_pred             eCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           91 DLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        91 Dtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ||||+.++          ..-....++.   +|++|+|+|+.++...+...+++++.+.++|.++++||+|...
T Consensus        91 DTPGHvDF----------~~Ev~~aLr~---~DgavlvVDaveGV~~qT~~v~~~a~~~~lp~i~~iNKiDr~~  151 (709)
T 4fn5_A           91 DTPGHVDF----------TIEVERSLRV---LDGAVVVFCGTSGVEPQSETVWRQANKYGVPRIVYVNKMDRQG  151 (709)
T ss_dssp             CCCSCTTC----------HHHHHHHHHH---CSEEEEEEETTTCSCHHHHHHHHHHHHHTCCEEEEEECSSSTT
T ss_pred             eCCCCccc----------HHHHHHHHHH---hCeEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEccccccC
Confidence            99997543          1222333444   8999999999999999999999999999999999999999854

>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*

Probab=99.55  E-value=1.9e-14  Score=109.12  Aligned_cols=62  Identities=15%  Similarity=0.042  Sum_probs=43.6

Q ss_pred             CCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       150 ~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      +.|.++|+||+|+.+...  ...+...++.+.+    +...+++++||++|.|++++++++.+.+..+
T Consensus       164 ~~~~iiv~NK~Dl~~~~~--~~~~~~~~~~~~~----~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~  225 (226)
T 2hf9_A          164 KTADLIVINKIDLADAVG--ADIKKMENDAKRI----NPDAEVVLLSLKTMEGFDKVLEFIEKSVKEV  225 (226)
T ss_dssp             TTCSEEEEECGGGHHHHT--CCHHHHHHHHHHH----CTTSEEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred             hcCCEEEEeccccCchhH--HHHHHHHHHHHHh----CCCCeEEEEEecCCCCHHHHHHHHHHHHHhh
Confidence            578899999999875321  1122333333322    2236899999999999999999999877654

>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*

Probab=99.53  E-value=3.7e-14  Score=126.09  Aligned_cols=114  Identities=18%  Similarity=0.145  Sum_probs=79.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccc--------ccc------CCCCeeEE---ee-EEEe---------------c
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELA--------LTS------KKPGKTQL---IN-HFLV---------------N   84 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~--------~~~------~~~~~t~~---~~-~~~~---------------~   84 (219)
                      ...+|+|+|..|+|||||+++|++..-..        ...      ...+.|..   .. .+..               +
T Consensus        18 ~~rnI~IiG~~~~GKTTL~~~Ll~~~g~i~~~~~~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~   97 (842)
T 1n0u_A           18 NVRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNS   97 (842)
T ss_dssp             GEEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSE
T ss_pred             cccEEEEECCCCCCHHHHHHHHHHhcCCcccccCCCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCC
Confidence            45789999999999999999999742100        000      01111211   11 1210               3


Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..+.+|||||+...          ......+++.   +|++|+|+|+.++.+.+....+.++...++|+++++||+|+..
T Consensus        98 ~~i~liDTPG~~df----------~~~~~~~l~~---aD~ailVvDa~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~  164 (842)
T 1n0u_A           98 FLINLIDSPGHVDF----------SSEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRAL  164 (842)
T ss_dssp             EEEEEECCCCCCSS----------CHHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHH
T ss_pred             ceEEEEECcCchhh----------HHHHHHHHHh---CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCeEEEEECCCcch
Confidence            46899999997532          2344566666   8999999999999888877777777778999999999999874

>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*

Probab=99.51  E-value=2.4e-14  Score=114.91  Aligned_cols=104  Identities=15%  Similarity=0.160  Sum_probs=62.9

Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEccc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCD  161 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D  161 (219)
                      +.+++++||||+....         .    ..   .+.+|.+++|+|+..+...      +.+..  .+.+.++++||+|
T Consensus       147 ~~~~iliDT~Gi~~~~---------~----~v---~~~~d~vl~v~d~~~~~~~------~~i~~~i~~~~~ivvlNK~D  204 (337)
T 2qm8_A          147 GFDVILVETVGVGQSE---------T----AV---ADLTDFFLVLMLPGAGDEL------QGIKKGIFELADMIAVNKAD  204 (337)
T ss_dssp             TCCEEEEEECSSSSCH---------H----HH---HTTSSEEEEEECSCC------------CCTTHHHHCSEEEEECCS
T ss_pred             CCCEEEEECCCCCcch---------h----hH---HhhCCEEEEEEcCCCcccH------HHHHHHHhccccEEEEEchh
Confidence            4579999999986321         0    11   1238999999998643221      11111  1346688899999


Q ss_pred             ccccccCCCchHhHHHHHHHHHh---cCC-----CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          162 KMKVAKGRRPDENIKSFQQLIRE---NYP-----HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~---~~~-----~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +....      .......+.+..   ...     ..++++.+||+++.|++++++.|.+...
T Consensus       205 l~~~~------~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~  260 (337)
T 2qm8_A          205 DGDGE------RRASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS  260 (337)
T ss_dssp             TTCCH------HHHHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred             ccCch------hHHHHHHHHHHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence            75421      112222222211   111     1368899999999999999999988765

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=99.47  E-value=2.9e-15  Score=121.64  Aligned_cols=124  Identities=16%  Similarity=0.184  Sum_probs=81.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ..+|+++|.+|+|||||+|+|++..     .....++.+++|.....+..+..+.++||||+....... .... .....
T Consensus       160 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~-~~l~-~~~l~  237 (368)
T 3h2y_A          160 GKDVYVVGCTNVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLIDIPLDEESSLYDTPGIINHHQMA-HYVG-KQSLK  237 (368)
T ss_dssp             TSCEEEEEBTTSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEEEEESSSSCEEEECCCBCCTTSGG-GGSC-HHHHH
T ss_pred             cceEEEecCCCCChhHHHHHHHhhhccccccceecCCCCCeecceEEEEecCCeEEEeCCCcCcHHHHH-HHhh-HHHHH
Confidence            3689999999999999999999862     234567888899888777777779999999986432111 1111 12222


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      .++ ..+..+.+++++++........+..+.++...+.|+++++||+|....
T Consensus       238 ~~~-~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~  288 (368)
T 3h2y_A          238 LIT-PTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHR  288 (368)
T ss_dssp             HHS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEE
T ss_pred             Hhc-cccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCcccccc
Confidence            222 234478899999985321111222245566678999999999998764

>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...

Probab=99.47  E-value=1.2e-13  Score=111.19  Aligned_cols=117  Identities=8%  Similarity=0.029  Sum_probs=77.1

Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCC-------ccc-HHHHHHhcc-------CC
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQ-------KID-LDCANWLGR-------NN  150 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~-------~~~-~~~~~~~~~-------~~  150 (219)
                      .+.+|||+|          ++.++..+..|+++   ++++|+|+|+++..+       ... .+...|+..       .+
T Consensus       194 ~l~iwDt~G----------Qe~~r~~w~~yf~~---a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~  260 (353)
T 1cip_A          194 HFKMFDVGG----------QRSERKKWIHCFEG---VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD  260 (353)
T ss_dssp             EEEEEEECC----------SGGGGGGGGGGCTT---CSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred             eEEEEeCCC----------chhhhHHHHHHHhc---CCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC
Confidence            456666665          56667888889988   999999999998543       111 222333321       57


Q ss_pred             CcEEEEEEcccccccccC-------------CCchHhHHHHHHH-HHhcC----CCCCCeEEeecCCCCChHHHHHHHHH
Q 027757          151 IPLTFVFTKCDKMKVAKG-------------RRPDENIKSFQQL-IRENY----PHHPPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       151 ~p~iiv~nK~D~~~~~~~-------------~~~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      .|+++++||+|+......             .+..++..++... +....    ...+.++++||+++.|++++|+++.+
T Consensus       261 ~piiLv~NK~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~  340 (353)
T 1cip_A          261 TSIILFLNKKDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTD  340 (353)
T ss_dssp             SEEEEEEECHHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHH
T ss_pred             CcEEEEEECcCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHH
Confidence            999999999998643210             1223344444332 22211    23467899999999999999999988


Q ss_pred             HHh
Q 027757          213 LRN  215 (219)
Q Consensus       213 ~~~  215 (219)
                      .+.
T Consensus       341 ~i~  343 (353)
T 1cip_A          341 VII  343 (353)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=99.46  E-value=6.6e-15  Score=119.63  Aligned_cols=125  Identities=15%  Similarity=0.130  Sum_probs=85.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC----cccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK----KELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~----~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+|+++|.+|+|||||+|+|++.    ......++.+++|.....+..+..+.++||||+......... .. ......
T Consensus       162 ~~~i~~vG~~nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~~~~~~~~~liDtPG~~~~~~~~~~-l~-~~~l~~  239 (369)
T 3ec1_A          162 GGDVYVVGCTNVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIEIPLESGATLYDTPGIINHHQMAHF-VD-ARDLKI  239 (369)
T ss_dssp             TSCEEEECCTTSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEEEECSTTCEEEECCSCCCCSSGGGG-SC-TTTHHH
T ss_pred             cCcEEEEcCCCCchHHHHHHHHhhccCCccceeecCCCCeEEeeEEEEeCCCeEEEeCCCcCcHHHHHHH-Hh-HHHHHH
Confidence            358999999999999999999985    124556778888888877777778999999998643211111 11 111222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccc
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~  166 (219)
                      ++ ..+.+|.+++++++........+..+.++...+.|+++++||.|.....
T Consensus       240 ~~-~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~  290 (369)
T 3ec1_A          240 IT-PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRT  290 (369)
T ss_dssp             HS-CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred             Hh-cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccc
Confidence            22 2244799999999853211112222455666789999999999987643

>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A

Probab=99.44  E-value=8.1e-13  Score=106.91  Aligned_cols=86  Identities=26%  Similarity=0.247  Sum_probs=54.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EE----------------------EecCeEEEEeCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HF----------------------LVNKSWYIVDLPGY   95 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~----------------------~~~~~~~liDtpg~   95 (219)
                      ++|+|+|.+|+|||||+|+|++..  ....+.+++|....  ..                      ..+..+.++||||+
T Consensus         2 ~~v~IVG~pnvGKSTL~n~L~~~~--~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl   79 (368)
T 2dby_A            2 LAVGIVGLPNVGKSTLFNALTRAN--ALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGL   79 (368)
T ss_dssp             CSEEEECCSSSSHHHHHHHHHHHH--TTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSC
T ss_pred             cEEEEECCCCCCHHHHHHHHhCCC--CcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCc
Confidence            589999999999999999999863  33444444433221  11                      12346899999997


Q ss_pred             CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           96 GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      ........+.  -+.+. .+++.   +|++++|+|+++
T Consensus        80 ~~~a~~~~~l--g~~fl-~~ir~---ad~ii~VvD~~~  111 (368)
T 2dby_A           80 VKGAHKGEGL--GNQFL-AHIRE---VAAIAHVLRCFP  111 (368)
T ss_dssp             CCCCCSSSCT--THHHH-HHHHT---CSEEEEEEECCC
T ss_pred             cccccccchH--HHHHH-HHHHh---CCEEEEEEECCC
Confidence            6432211111  01121 22344   899999999985

>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2

Probab=99.41  E-value=2.7e-12  Score=103.32  Aligned_cols=86  Identities=21%  Similarity=0.192  Sum_probs=52.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec------------------CeEEEEeCCCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN------------------KSWYIVDLPGYGFAK   99 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpg~~~~~   99 (219)
                      .+|+|+|.+|+|||||+|+|++..  ....+.+++|....  ....+                  ..+.++||||+....
T Consensus         3 ~kI~IVG~pnvGKSTL~n~Lt~~~--~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a   80 (363)
T 1jal_A            3 FKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGA   80 (363)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTH
T ss_pred             CEEEEECCCCCCHHHHHHHHHCCC--CcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccc
Confidence            689999999999999999999964  44455555444321  22222                  368999999975321


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      .  .++    .+...++...+.+|++++|+|+++
T Consensus        81 ~--~~~----gl~~~fl~~ir~ad~il~VvD~~~  108 (363)
T 1jal_A           81 S--KGE----GLGNKFLANIRETDAIGHVVRCFE  108 (363)
T ss_dssp             H--HHG----GGTCCHHHHHHTCSEEEEEEECSC
T ss_pred             c--ccc----hHHHHHHHHHHhcCeEEEEEecCC
Confidence            1  011    111122222233899999999986

>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}

Probab=99.41  E-value=3.1e-12  Score=104.88  Aligned_cols=155  Identities=14%  Similarity=0.174  Sum_probs=86.1

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccc--cCCCCeeEE-eeEEEec----CeEEEEeCCCCCCCCCCcc----
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALT--SKKPGKTQL-INHFLVN----KSWYIVDLPGYGFAKAPDV----  103 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~--~~~~~~t~~-~~~~~~~----~~~~liDtpg~~~~~~~~~----  103 (219)
                      ..+..++++|+|++|+|||||+|.|+|.......  ...++.+.. +....-.    ..++++|++|+........    
T Consensus        38 ~~Gei~~vaLvG~nGaGKSTLln~L~G~~l~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~  117 (427)
T 2qag_B           38 SQGFCFNILCVGETGLGKSTLMDTLFNTKFEGEPATHTQPGVQLQSNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKP  117 (427)
T ss_dssp             C-CCEEEEEEECSTTSSSHHHHHHHHTSCC-------CCSSCEEEEEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHH
T ss_pred             cCCCeeEEEEECCCCCCHHHHHHHHhCccccCCcCCCCCccceEeeEEEEeecCccccccchhhhhhhhhccccchhhhH
Confidence            3444567999999999999999999997322111  112232322 2222211    2679999999864321100    


Q ss_pred             ----hhhhHHHHHHHHhhcc------CC--cc-EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCC
Q 027757          104 ----TRMDWSSFTKGYFLNR------ES--LV-GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRR  170 (219)
Q Consensus       104 ----~~~~~~~~~~~~~~~~------~~--~d-~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~  170 (219)
                          ....+..+...+....      ..  +| +++++.|+..+.+..+.++++++. .+.|+++|+||+|....     
T Consensus       118 i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~-----  191 (427)
T 2qag_B          118 IVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISK-----  191 (427)
T ss_dssp             HHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCH-----
T ss_pred             HHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccch-----
Confidence                0112222222221111      11  23 467788888888888888888887 68999999999998865     


Q ss_pred             chHhHHHHHHHHHh-cCCCCCCeEEeec
Q 027757          171 PDENIKSFQQLIRE-NYPHHPPWIMTSS  197 (219)
Q Consensus       171 ~~~~~~~~~~~~~~-~~~~~~~~~~~Sa  197 (219)
                        .+...+.+.+.. .-...++++++|.
T Consensus       192 --~E~~~l~~~I~~~L~~~gi~I~~is~  217 (427)
T 2qag_B          192 --SELTKFKIKITSELVSNGVQIYQFPT  217 (427)
T ss_dssp             --HHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred             --HHHHHHHHHHHHHHHHcCCcEEecCC
Confidence              334444444443 1123356666664

>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*

Probab=99.38  E-value=1.9e-12  Score=102.91  Aligned_cols=115  Identities=9%  Similarity=0.014  Sum_probs=73.6

Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC-------CCCCcccH-HHHHHhcc-------CCCcEEEEEEcccc
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS-------VPPQKIDL-DCANWLGR-------NNIPLTFVFTKCDK  162 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~-------~~~~~~~~-~~~~~~~~-------~~~p~iiv~nK~D~  162 (219)
                      ..|+.+|++.+++.+..|+++   ++++|+|+|++       +..+.... +...++..       .+.|+++++||+|+
T Consensus       170 ~iwDtgGQe~~R~~w~~yf~~---~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~~~iiL~~NK~DL  246 (327)
T 3ohm_A          170 RMVDVGGQRSERRKWIHCFEN---VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDL  246 (327)
T ss_dssp             EEEEECCSHHHHTTGGGGCSS---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTTCEEEEEEECHHH
T ss_pred             EEEEcCCchhHHHHHHHHhCC---CCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCCceEEEEEECchh
Confidence            344445578888999999998   99999999876       22222211 22233321       57899999999998


Q ss_pred             ccccc--------------CCCchHhHHHHHH-HHHhcC---CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          163 MKVAK--------------GRRPDENIKSFQQ-LIRENY---PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       163 ~~~~~--------------~~~~~~~~~~~~~-~~~~~~---~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .....              ..+..++..++.. .+....   ...+.++++||+++.|++++|..+.+..-
T Consensus       247 ~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il  317 (327)
T 3ohm_A          247 LEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  317 (327)
T ss_dssp             HHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHH
Confidence            65321              1222333333322 222211   12356789999999999999999988654

>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}

Probab=99.36  E-value=2.1e-12  Score=103.16  Aligned_cols=118  Identities=8%  Similarity=-0.035  Sum_probs=73.5

Q ss_pred             CCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------Cccc-HHHHHHhc-------cCCCcEEEEEE
Q 027757           94 GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKID-LDCANWLG-------RNNIPLTFVFT  158 (219)
Q Consensus        94 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~-~~~~~~~~-------~~~~p~iiv~n  158 (219)
                      ++....|+.+|++.+++++..|+++   ++++|+|+|+++..       +... .+...++.       -.+.|+++++|
T Consensus       160 ~v~l~iwDtaGQe~~R~~w~~yy~~---a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~~piiLv~N  236 (340)
T 4fid_A          160 DIPFHLIDVGGQRSERKXWVSFFSD---VDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKGAVKLIFLN  236 (340)
T ss_dssp             SCEEEEEECCSCHHHHHHHHTTSCS---CSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTTSEEEEEEE
T ss_pred             eeeeccccCCCcccccccHHHHhcc---CCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCCCeEEEEEE
Confidence            3334445555688899999999998   99999999998311       1111 12223332       15789999999


Q ss_pred             cccccccccC-------------CCchHhHHHHH-HHH------HhcCC--------------CCCCeEEeecCCCCChH
Q 027757          159 KCDKMKVAKG-------------RRPDENIKSFQ-QLI------RENYP--------------HHPPWIMTSSVTGLGRD  204 (219)
Q Consensus       159 K~D~~~~~~~-------------~~~~~~~~~~~-~~~------~~~~~--------------~~~~~~~~Sa~~~~~v~  204 (219)
                      |+|+......             ....++..+++ +.+      .....              ..+.++++||++..|++
T Consensus       237 K~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~  316 (340)
T 4fid_A          237 KMDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIK  316 (340)
T ss_dssp             CHHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHH
T ss_pred             CchhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHH
Confidence            9998642210             01112222222 223      11000              23568999999999999


Q ss_pred             HHHHHHHHHH
Q 027757          205 ELLLHMSQLR  214 (219)
Q Consensus       205 el~~~l~~~~  214 (219)
                      .+|+.+.+.+
T Consensus       317 ~vF~~v~~~I  326 (340)
T 4fid_A          317 RVFMLAVDVI  326 (340)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}

Probab=99.32  E-value=1.2e-11  Score=96.22  Aligned_cols=125  Identities=22%  Similarity=0.334  Sum_probs=73.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccccccc-------CCCCee--EEee----EEEecCeEEEEeCCCCCCCCCCcchh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTS-------KKPGKT--QLIN----HFLVNKSWYIVDLPGYGFAKAPDVTR  105 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-------~~~~~t--~~~~----~~~~~~~~~liDtpg~~~~~~~~~~~  105 (219)
                      .++++|+|+.|+|||||+|.|+|.. .+...       +.....  ..+.    .......++++|++|+..........
T Consensus         2 ~f~v~lvG~nGaGKSTLln~L~g~~-~~~~G~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~   80 (270)
T 3sop_A            2 DFNIMVVGQSGLGKSTLVNTLFKSQ-VSRKASSWNREEKIPKTVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW   80 (270)
T ss_dssp             EEEEEEEESSSSSHHHHHHHHHHHH-C------------CCCCCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCC-CCCCCccccCCcccCcceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence            3689999999999999999999863 22111       011111  1111    11123368999999986432211110


Q ss_pred             hh--------HHHHHHHHhhcc-------CCccEEEEEEeCC-CCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757          106 MD--------WSSFTKGYFLNR-------ESLVGVLLLIDAS-VPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       106 ~~--------~~~~~~~~~~~~-------~~~d~vi~v~d~~-~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      ..        +.......+..-       ..++++++++|.. .+....+.+.++++... .++++|+||+|....
T Consensus        81 ~~i~~~~~~~~~~~~~~~LS~G~~qrv~iaRal~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~  155 (270)
T 3sop_A           81 EPIEKYINEQYEKFLKEEVNIARKKRIPDTRVHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTL  155 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHSCTTCCSSCCCCSCCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCH
T ss_pred             HHHHHHHHHHHHhhhHHhcCcccchhhhhheeeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCH
Confidence            11        111111111111       1257889999965 77888888888888876 999999999998865

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=99.32  E-value=5.6e-13  Score=105.47  Aligned_cols=133  Identities=19%  Similarity=0.154  Sum_probs=87.2

Q ss_pred             HHHHHHhcCccc-ccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757           54 SLINALVRKKEL-ALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS  132 (219)
Q Consensus        54 slin~l~~~~~~-~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  132 (219)
                      +|+.+++...+. ..+.++.+...... ...+..+.+||+            ++.|+++...|+++   +|++|+|+|++
T Consensus        32 sl~~~~~~~~f~~~~~~pTiGd~~~~~-~~~~~~~~iwD~------------qer~~~l~~~~~~~---ad~vilV~D~~   95 (301)
T 1u0l_A           32 ERILCKLRGKFRLQNLKIYVGDRVEYT-PDETGSGVIENV------------LHRKNLLTKPHVAN---VDQVILVVTVK   95 (301)
T ss_dssp             CEEEEEECGGGTTTTCCCCTTCEEEEE-CCCSSSEEEEEE------------CCCSCEETTTTEES---CCEEEEEECSS
T ss_pred             cEEEEEEcccccccCCCCCCccEEEEE-EcCCCeEEEEEE------------ccccceeecccccc---CCEEEEEEeCC
Confidence            577777766566 56667777443322 222347889998            12223344567777   99999999999


Q ss_pred             CCCCcccHHHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHH
Q 027757          133 VPPQKIDLDCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLH  209 (219)
Q Consensus       133 ~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~  209 (219)
                      ++.+... .+-+|+   ...++|+++|+||+|+.+...    .++.+++.+.+..   . .+++++||+++.|+++++.+
T Consensus        96 ~~~~s~~-~l~~~l~~~~~~~~piilv~NK~DL~~~~~----v~~~~~~~~~~~~---~-~~~~~~SAktg~gv~~lf~~  166 (301)
T 1u0l_A           96 MPETSTY-IIDKFLVLAEKNELETVMVINKMDLYDEDD----LRKVRELEEIYSG---L-YPIVKTSAKTGMGIEELKEY  166 (301)
T ss_dssp             TTCCCHH-HHHHHHHHHHHTTCEEEEEECCGGGCCHHH----HHHHHHHHHHHTT---T-SCEEECCTTTCTTHHHHHHH
T ss_pred             CCCCCHH-HHHHHHHHHHHCCCCEEEEEeHHHcCCchh----HHHHHHHHHHHhh---h-CcEEEEECCCCcCHHHHHHH
Confidence            8863222 222333   346899999999999976421    0223444444432   1 58999999999999999987


Q ss_pred             HH
Q 027757          210 MS  211 (219)
Q Consensus       210 l~  211 (219)
                      +.
T Consensus       167 l~  168 (301)
T 1u0l_A          167 LK  168 (301)
T ss_dssp             HS
T ss_pred             hc
Confidence            64

>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}

Probab=99.21  E-value=7.2e-11  Score=87.13  Aligned_cols=171  Identities=15%  Similarity=0.075  Sum_probs=94.8

Q ss_pred             CCCCCCCCeEEEEcCC-CCCHHHHHHHHhcCcccccccCCC---------CeeEEe------eEEE--------------
Q 027757           33 DCPKDDRPEFAILGRS-NVGKSSLINALVRKKELALTSKKP---------GKTQLI------NHFL--------------   82 (219)
Q Consensus        33 ~~~~~~~~~v~i~G~~-g~GKSslin~l~~~~~~~~~~~~~---------~~t~~~------~~~~--------------   82 (219)
                      .......||++++||. ..=..+|+.++...+....+...+         |++...      ...+              
T Consensus        10 s~~~~~~pr~amfgpgle~~~~~lv~~~m~~~~~~p~~g~~~~~~~gigsgv~~~~~~~~~fni~tlys~~~~er~~~~~   89 (227)
T 3l82_B           10 SLIIQNEPRFAMFGPGLEELNTSLVLSLMSSEELCPTAGLPQRQIDGIGSGVNFQLNNQHKFNILILYSTTRKERDRARE   89 (227)
T ss_dssp             CCCCCCCCEEEEECGGGTSSSSCHHHHHHTCCSSCCEECCGGGCCTTSCCCEEEESSSSCEEEEEECSCC----------
T ss_pred             HhccCCCceEEEecCCcccccHHHHHHHhcCCCcccccCCCCCCcCccccceEEEECCeeEEEEEEeccCcHHHhhhhhh
Confidence            3445668999999993 344568999998865333222222         111110      0000              


Q ss_pred             ----ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccH-HH---HHHhcc----CC
Q 027757           83 ----VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDL-DC---ANWLGR----NN  150 (219)
Q Consensus        83 ----~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~-~~---~~~~~~----~~  150 (219)
                          .-+++....+||    ..+.+||..++.+|+.||.+   +|++|||+|+++....... ++   ...+.+    .+
T Consensus        90 ~~~~~~~k~~~~~~~~----~~~~GGQ~klRplWr~Yy~~---TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~g  162 (227)
T 3l82_B           90 EHTSAVNKMFSRHNEG----DDQQGSRYSVIPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSG  162 (227)
T ss_dssp             -------------------------------CCHHHHHHH---CSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSC
T ss_pred             hhhhhhhhcccccCCC----ccccCcHHHHHHHHHHHhcC---CCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCC
Confidence                011334444554    34566899999999999999   9999999999986543322 22   223332    46


Q ss_pred             CcEEEEEEcc-cccccccCCCchHhHHHHHHHHHhc-CCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          151 IPLTFVFTKC-DKMKVAKGRRPDENIKSFQQLIREN-YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       151 ~p~iiv~nK~-D~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      .|++|+.||. |+...       ....++.+.++.. ......+..|||.+|.|+.|-++||.+.++..
T Consensus       163 apLLVlANKqqDlp~A-------ms~~EI~e~L~L~~l~R~W~Iq~csA~TGeGL~EGLdWL~~~l~~k  224 (227)
T 3l82_B          163 RPLLVLSCISQGDVKR-------MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  224 (227)
T ss_dssp             SCEEEEEEESSTTSCB-------CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHTTTTTTC
T ss_pred             CeEEEEeCCCcCccCC-------CCHHHHHHHcCCcCCCCCEEEEEeECCCCcCHHHHHHHHHHHHHhh
Confidence            8999999996 66432       1233333333221 13456789999999999999999998876554

>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A

Probab=99.21  E-value=3.3e-11  Score=101.08  Aligned_cols=159  Identities=17%  Similarity=0.155  Sum_probs=88.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh------cCcccccccCCC---C-------------eeEEee---------------E
Q 027757           38 DRPEFAILGRSNVGKSSLINALV------RKKELALTSKKP---G-------------KTQLIN---------------H   80 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~------~~~~~~~~~~~~---~-------------~t~~~~---------------~   80 (219)
                      ....|+++|.+|+||||++++|.      +.+ ...++..+   +             ......               .
T Consensus       100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~k-VllVd~D~~r~aa~~qL~~~~~~~~i~v~~~~~~~dp~~i~~~al~~  178 (504)
T 2j37_W          100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWK-TCLICADTFRAGAFDQLKQNATKARIPFYGSYTEMDPVIIASEGVEK  178 (504)
T ss_dssp             --EEEEEECSTTSSHHHHHHHHHHHHHHTTCC-EEEEEECCSSSHHHHHHHHHHHHHTCCEEECCCCSCHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCe-EEEEeccccchhHHHHHHHHhhccCceEEccCCCCCHHHHHHHHHHH
Confidence            34579999999999999999999      442 11111100   0             000000               0


Q ss_pred             E-EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcE-EEEEE
Q 027757           81 F-LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL-TFVFT  158 (219)
Q Consensus        81 ~-~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~-iiv~n  158 (219)
                      . ..+..++++||||....  +...........+ . .   .+|.+++|+|+..+..  .......+.+ .+|+ .+|+|
T Consensus       179 ~~~~~~DvvIIDTpG~~~~--~~~l~~el~~~~~-~-i---~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlN  248 (504)
T 2j37_W          179 FKNENFEIIIVDTSGRHKQ--EDSLFEEMLQVAN-A-I---QPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVT  248 (504)
T ss_dssp             HHHTTCCEEEEEECCCCTT--CHHHHHHHHHHHH-H-H---CCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEE
T ss_pred             HHHCCCcEEEEeCCCCccc--chhHHHHHHHHHh-h-h---cCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEe
Confidence            0 02447999999997532  1111111112211 1 1   3799999999987643  2333444433 2674 89999


Q ss_pred             cccccccccCCCchHhHHHHHHHHHh---------cC---CCCCCeEEeecCCCCC-hHHHHHHHHHH
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQLIRE---------NY---PHHPPWIMTSSVTGLG-RDELLLHMSQL  213 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~~~~~---------~~---~~~~~~~~~Sa~~~~~-v~el~~~l~~~  213 (219)
                      |+|.....      .........++.         ..   ....+.+++|+..|.| +.+|++++.+.
T Consensus       249 K~D~~~~~------g~~l~~~~~~g~PI~fig~ge~~~dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~  310 (504)
T 2j37_W          249 KLDGHAKG------GGALSAVAATKSPIIFIGTGEHIDDFEPFKTQPFISKLLGMGDIEGLIDKVNEL  310 (504)
T ss_dssp             CTTSCCCC------THHHHHHHHHCCCEEEEECSSSTTCEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred             CCccccch------HHHHHHHHHhCCCeEEeccccchhhhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence            99986431      111122222210         00   0112446689999999 99999998765

>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*

Probab=99.16  E-value=8e-10  Score=90.60  Aligned_cols=165  Identities=22%  Similarity=0.156  Sum_probs=93.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccccccc---CCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTS---KKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~---~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+|++|||||||+|.++|........   ....+++........  ..++++|+||+....      ...+...+.
T Consensus        70 ~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t~~~~v~q~~~~~~ltv~D~~g~~~~~------~~~~~~L~~  143 (413)
T 1tq4_A           70 LNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTN------FPPDTYLEK  143 (413)
T ss_dssp             EEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSS------CCHHHHHHH
T ss_pred             eEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecceeEEeccccccCCeeehHhhcccchH------HHHHHHHHH
Confidence            489999999999999999999952111111   111111111111111  368999999975321      112222222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc--ccccC---CCchHhHHHHHHHHH-----h
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM--KVAKG---RRPDENIKSFQQLIR-----E  184 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~--~~~~~---~~~~~~~~~~~~~~~-----~  184 (219)
                      +-  ....+..++ ++... ...+...+.+.+...++|+++|+||.|+.  ++...   ......+.+.++.+.     .
T Consensus       144 ~~--L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~  219 (413)
T 1tq4_A          144 MK--FYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRE  219 (413)
T ss_dssp             TT--GGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred             cC--CCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHh
Confidence            11  111344454 77664 24455667777777889999999999975  11110   111233333444432     2


Q ss_pred             cCCCCCCeEEeec--CCCCChHHHHHHHHHHH
Q 027757          185 NYPHHPPWIMTSS--VTGLGRDELLLHMSQLR  214 (219)
Q Consensus       185 ~~~~~~~~~~~Sa--~~~~~v~el~~~l~~~~  214 (219)
                      .......++.+|+  .++.|++++.+.+.+.+
T Consensus       220 ~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~L  251 (413)
T 1tq4_A          220 NGIAEPPIFLLSNKNVCHYDFPVLMDKLISDL  251 (413)
T ss_dssp             TTCSSCCEEECCTTCTTSTTHHHHHHHHHHHS
T ss_pred             cCCCCCcEEEEecCcCCccCHHHHHHHHHHhC
Confidence            1122347899999  56677999999997654

>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}

Probab=99.15  E-value=5.3e-11  Score=96.77  Aligned_cols=89  Identities=21%  Similarity=0.143  Sum_probs=45.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe------------------cCeEEEEeCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV------------------NKSWYIVDLPGYGFA   98 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~~liDtpg~~~~   98 (219)
                      ..+|+|+|.+|+|||||+|+|++...  ...+.+++|.....  ...                  +..+.++||||+...
T Consensus        22 ~~kvgIVG~pnvGKSTL~n~Ltg~~~--~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~   99 (396)
T 2ohf_A           22 SLKIGIVGLPNVGKSTFFNVLTNSQA--SAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKG   99 (396)
T ss_dssp             CCCEEEECCSSSSHHHHHHHHHC---------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC----
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCCc--cccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccc
Confidence            57899999999999999999999742  55666666654322  111                  234899999997542


Q ss_pred             CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC
Q 027757           99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP  135 (219)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~  135 (219)
                      .....+.   ......+++.   +|++++|+|+.+..
T Consensus       100 as~~~gl---g~~~l~~ir~---aD~Il~VvD~~~~~  130 (396)
T 2ohf_A          100 AHNGQGL---GNAFLSHISA---CDGIFHLTRAFEDD  130 (396)
T ss_dssp             ----------CCHHHHHHHT---SSSEEEEEEC----
T ss_pred             cchhhHH---HHHHHHHHHh---cCeEEEEEecCCCc
Confidence            2111110   0112334444   89999999998643

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=99.08  E-value=3.8e-10  Score=91.18  Aligned_cols=117  Identities=13%  Similarity=0.113  Sum_probs=70.9

Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc--------ccHHHHHHhc-------cCC
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK--------IDLDCANWLG-------RNN  150 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~--------~~~~~~~~~~-------~~~  150 (219)
                      .+.+|||+|          ++.++..+..++++   ++++|+|+|+++....        .-.+...++.       -.+
T Consensus       202 ~l~i~Dt~G----------q~~~r~~w~~~f~~---~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~  268 (362)
T 1zcb_A          202 PFKMVDVGG----------QRSERKRWFECFDS---VTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN  268 (362)
T ss_dssp             EEEEEEECC-----------------CTTSCTT---CCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT
T ss_pred             EEEEEeccc----------hhhhhhhHHHHhCC---CCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC
Confidence            678888887          34556777788877   8999999999984211        1112222322       157


Q ss_pred             CcEEEEEEcccccccc--------------cCCCchHhHHHHH-HHHHhcC----CCCCCeEEeecCCCCChHHHHHHHH
Q 027757          151 IPLTFVFTKCDKMKVA--------------KGRRPDENIKSFQ-QLIRENY----PHHPPWIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       151 ~p~iiv~nK~D~~~~~--------------~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~  211 (219)
                      .|+++++||+|+....              +..+..++..++. ..+....    ...+.++++||+++.|++++|+++.
T Consensus       269 ~piILv~NK~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~  348 (362)
T 1zcb_A          269 VSIILFLNKTDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVK  348 (362)
T ss_dssp             SEEEEEEECHHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHH
T ss_pred             CCEEEEEEChhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHH
Confidence            8999999999986432              0112233333333 1222211    2246789999999999999999998


Q ss_pred             HHHh
Q 027757          212 QLRN  215 (219)
Q Consensus       212 ~~~~  215 (219)
                      +.+.
T Consensus       349 ~~i~  352 (362)
T 1zcb_A          349 DTIL  352 (362)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7653

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=99.05  E-value=3.9e-10  Score=88.24  Aligned_cols=61  Identities=36%  Similarity=0.489  Sum_probs=41.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA   98 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~   98 (219)
                      ...++|+++|.+|+|||||+|+|++. ....+.+.+++|++...+..+..+.++||||+...
T Consensus       118 ~~~~~v~~vG~~nvGKSsliN~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~  178 (282)
T 1puj_A          118 PRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWP  178 (282)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCS
T ss_pred             CCCceEEEEecCCCchHHHHHHHhcC-ceeecCCCCCeeeeeEEEEeCCCEEEEECcCcCCC
Confidence            34579999999999999999999997 56778888899988776667778999999998644

>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}

Probab=99.05  E-value=1.4e-10  Score=93.35  Aligned_cols=113  Identities=9%  Similarity=-0.025  Sum_probs=70.5

Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC----------CCCCcccHHHHHHhc-------cCCCcEEEEEEcc
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS----------VPPQKIDLDCANWLG-------RNNIPLTFVFTKC  160 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~----------~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~  160 (219)
                      ..|+.+|++.++.++..|+++   ++++|+|+|++          +..+.  .+...|+.       ..+.|+++|+||+
T Consensus       186 ~iwDtaGQe~~r~~~~~y~~~---~~~iI~v~dis~ydq~l~e~~~~~s~--~~~~~~~~~i~~~~~~~~~piiLvgNK~  260 (354)
T 2xtz_A          186 RLFDVGGQRNERRKWIHLFEG---VTAVIFCAAISEYDQTLFEDEQKNRM--METKELFDWVLKQPCFEKTSFMLFLNKF  260 (354)
T ss_dssp             EEEEECCSTTGGGGTGGGCTT---EEEEEEEEEGGGTTCBCSSCTTSBHH--HHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred             EEEECCCchhhhHHHHHHhCC---CCEEEEEEECcccccccccccchhHH--HHHHHHHHHHHhccccCCCeEEEEEECc
Confidence            334444567778888999988   99999999998          22222  12233332       1578999999999


Q ss_pred             cccccccCCCc-------------------hHhHHHHH-HHHHhc---C------CCCCCeEEeecCCCCChHHHHHHHH
Q 027757          161 DKMKVAKGRRP-------------------DENIKSFQ-QLIREN---Y------PHHPPWIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       161 D~~~~~~~~~~-------------------~~~~~~~~-~~~~~~---~------~~~~~~~~~Sa~~~~~v~el~~~l~  211 (219)
                      |+.......+.                   .++..++. +.+...   .      .....++++||+++.|++++|+++.
T Consensus       261 DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~v~  340 (354)
T 2xtz_A          261 DIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKLVD  340 (354)
T ss_dssp             HHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHHHH
T ss_pred             chhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHHHH
Confidence            98654221111                   12222221 111110   0      1223468999999999999999998


Q ss_pred             HHHh
Q 027757          212 QLRN  215 (219)
Q Consensus       212 ~~~~  215 (219)
                      +.+.
T Consensus       341 ~~I~  344 (354)
T 2xtz_A          341 ETLR  344 (354)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            7654

>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}

Probab=98.96  E-value=4.9e-09  Score=85.04  Aligned_cols=104  Identities=13%  Similarity=0.104  Sum_probs=73.7

Q ss_pred             hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      .++.|.++...++..   ++++++|+|++++.+....++.+++.  +.|+++|+||+|+.+..   ...+...++.....
T Consensus        57 ~~e~f~~~L~~~~~~---~~lil~VvD~~d~~~s~~~~l~~~l~--~~piilV~NK~DLl~~~---~~~~~~~~~l~~~~  128 (369)
T 3ec1_A           57 DDDDFLSMLHRIGES---KALVVNIVDIFDFNGSFIPGLPRFAA--DNPILLVGNKADLLPRS---VKYPKLLRWMRRMA  128 (369)
T ss_dssp             --CHHHHHHHHHHHH---CCEEEEEEETTCSGGGCCSSHHHHCT--TSCEEEEEECGGGSCTT---CCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHhhcc---CcEEEEEEECCCCCCchhhHHHHHhC--CCCEEEEEEChhcCCCc---cCHHHHHHHHHHHH
Confidence            467788898888887   78999999999876544434444443  78999999999998642   22334455544332


Q ss_pred             hcCC-CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          184 ENYP-HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       184 ~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...+ ...+++++||++|.|++++++.+.+..+
T Consensus       129 ~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~  161 (369)
T 3ec1_A          129 EELGLCPVDVCLVSAAKGIGMAKVMEAINRYRE  161 (369)
T ss_dssp             HTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHT
T ss_pred             HHcCCCcccEEEEECCCCCCHHHHHHHHHhhcc
Confidence            2222 2236899999999999999999987654

>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8

Probab=98.95  E-value=1.1e-08  Score=79.89  Aligned_cols=91  Identities=16%  Similarity=0.214  Sum_probs=69.6

Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCe
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPW  192 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  192 (219)
                      +........+|+++.|+|+.++.+..+..+.+++  .++|.++|+||+|+.+.       +..+.+.+.+..   ...++
T Consensus        15 ~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~-------~~~~~~~~~~~~---~g~~~   82 (282)
T 1puj_A           15 REVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA-------AVTQQWKEHFEN---QGIRS   82 (282)
T ss_dssp             HHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH-------HHHHHHHHHHHT---TTCCE
T ss_pred             HHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH-------HHHHHHHHHHHh---cCCcE
Confidence            3344444558999999999999888766666666  47899999999999863       345556665543   12589


Q ss_pred             EEeecCCCCChHHHHHHHHHHHh
Q 027757          193 IMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++||+++.|++++++.+.+.+.
T Consensus        83 i~iSA~~~~gi~~L~~~i~~~l~  105 (282)
T 1puj_A           83 LSINSVNGQGLNQIVPASKEILQ  105 (282)
T ss_dssp             EECCTTTCTTGGGHHHHHHHHHH
T ss_pred             EEEECCCcccHHHHHHHHHHHHH
Confidence            99999999999999998887764

>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}

Probab=98.94  E-value=3.7e-09  Score=85.72  Aligned_cols=104  Identities=15%  Similarity=0.104  Sum_probs=71.3

Q ss_pred             hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      ..+.|.++...+++.   +|++++|+|++++.......+.+++  .++|+++|+||+|+.+..   ...+..+++.+...
T Consensus        55 ~~e~f~~~l~~i~~~---~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~~---~~~~~~~~~l~~~~  126 (368)
T 3h2y_A           55 TDDDFLRILNGIGKS---DALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPKS---VKHDKVKHWMRYSA  126 (368)
T ss_dssp             -CHHHHHHHHHHHHS---CCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCTT---SCHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhcc---CcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCcc---cCHHHHHHHHHHHH
Confidence            457788899998888   7899999999875322212223333  378999999999997642   22334555544332


Q ss_pred             hcCC-CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          184 ENYP-HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       184 ~~~~-~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...+ ...+++++||++|.|++++++.+.+...
T Consensus       127 ~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~  159 (368)
T 3h2y_A          127 KQLGLKPEDVFLISAAKGQGIAELADAIEYYRG  159 (368)
T ss_dssp             HHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcc
Confidence            2222 2236899999999999999999987543

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=98.94  E-value=1.9e-09  Score=83.38  Aligned_cols=108  Identities=11%  Similarity=-0.082  Sum_probs=73.2

Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHH----HHHHhcc----CCCcEEEEEEc-ccccccccCCC
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLD----CANWLGR----NNIPLTFVFTK-CDKMKVAKGRR  170 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~----~~~~~~~----~~~p~iiv~nK-~D~~~~~~~~~  170 (219)
                      .+.+||..++.+++.|+.+   +|++|||+|+++.......+    +...+.+    .+.|++|+.|| -|+...     
T Consensus       192 ~~~GGQ~~lRplWr~Yy~~---tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~A-----  263 (312)
T 3l2o_B          192 DQQGSRYSVIPQIQKVCEV---VDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVKR-----  263 (312)
T ss_dssp             -----CCCCCHHHHHHHHH---CSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSCB-----
T ss_pred             cCCCCHHHHHHHHHHHhcC---CCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccCC-----
Confidence            4457889999999999999   99999999999876533222    1122321    57899999997 477543     


Q ss_pred             chHhHHHHHHHHHhc-CCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          171 PDENIKSFQQLIREN-YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       171 ~~~~~~~~~~~~~~~-~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                        ....++.+.++.. ......+..+||.+|+|+.|-++||.+.++..
T Consensus       264 --ms~~EI~e~L~L~~l~r~W~Iq~csA~tGeGL~EGldWL~~~l~~k  309 (312)
T 3l2o_B          264 --MPCFYLAHELHLNLLNHPWLVQDTEAETLTGFLNGIEWILEEVESK  309 (312)
T ss_dssp             --CCHHHHHHHTTGGGGCSCEEEEEEETTTCTTHHHHHHHHHHHSCC-
T ss_pred             --CCHHHHHHHcCCccCCCcEEEEecccCCCcCHHHHHHHHHHHHHhh
Confidence              1223333333221 12456789999999999999999999887654

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.90  E-value=8.5e-10  Score=85.39  Aligned_cols=58  Identities=33%  Similarity=0.488  Sum_probs=41.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA   98 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~   98 (219)
                      .+++++|.+|+|||||+|+|.+. ....+.+.+++|.....+..+..+.++||||+...
T Consensus       100 ~~v~~vG~~~vGKSslin~l~~~-~~~~~~~~~g~T~~~~~~~~~~~~~l~DtpG~~~~  157 (262)
T 3cnl_A          100 ARVLIVGVPNTGKSTIINKLKGK-RASSVGAQPGITKGIQWFSLENGVKILDTPGILYK  157 (262)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTT-CC----------CCSCEEECTTSCEEESSCEECCC
T ss_pred             hheEEeCCCCCCHHHHHHHHhcc-cccccCCCCCCccceEEEEeCCCEEEEECCCcccC
Confidence            69999999999999999999997 45567788888887766666778999999997644

>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*

Probab=98.89  E-value=9.5e-10  Score=89.72  Aligned_cols=114  Identities=11%  Similarity=0.025  Sum_probs=72.7

Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC----------CCCcccHHHHHHhcc-------CCCcEEEEEEc
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV----------PPQKIDLDCANWLGR-------NNIPLTFVFTK  159 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~----------~~~~~~~~~~~~~~~-------~~~p~iiv~nK  159 (219)
                      ...|+.+|++.++..+..|+++   ++++|+|+|+++          ..+..  ....|+..       .+.|+++|+||
T Consensus       219 l~iwDtaGQe~~r~~w~~yf~~---a~~iIfV~dis~ydq~l~ed~~~ns~~--e~~~~~~~i~~~~~~~~~piiLvgNK  293 (402)
T 1azs_C          219 FHMFDVGGQRDERRKWIQCFND---VTAIIFVVASSSYNMVIREDNQTNRLQ--EALNLFKSIWNNRWLRTISVILFLNK  293 (402)
T ss_dssp             EEEEEECCSGGGGGGGGGGTTT---CCEEEEEEETTGGGCBCTTTSCSBHHH--HHHHHHHHHHTCTTCSSCCEEEEEEC
T ss_pred             ceecccchhhhhhhhhHhhccC---CCEEEEEEECcccccccccccccchHH--HHHHHHHHHHhcccCCCCeEEEEEEC
Confidence            3445555577788899999998   999999999997          32222  23333331       46899999999


Q ss_pred             cccccccc---CC----------------------C---chHhHHHHHH-HHHhc------CCCCCCeEEeecCCCCChH
Q 027757          160 CDKMKVAK---GR----------------------R---PDENIKSFQQ-LIREN------YPHHPPWIMTSSVTGLGRD  204 (219)
Q Consensus       160 ~D~~~~~~---~~----------------------~---~~~~~~~~~~-~~~~~------~~~~~~~~~~Sa~~~~~v~  204 (219)
                      +|+.....   ..                      -   ..+....+.. .+...      ....+.++++||+++.|++
T Consensus       294 ~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~  373 (402)
T 1azs_C          294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR  373 (402)
T ss_dssp             HHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHH
T ss_pred             hhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHH
Confidence            99854321   10                      0   0122223321 11111      0123457899999999999


Q ss_pred             HHHHHHHHHHh
Q 027757          205 ELLLHMSQLRN  215 (219)
Q Consensus       205 el~~~l~~~~~  215 (219)
                      ++|.++.+.+.
T Consensus       374 ~vF~~v~~~I~  384 (402)
T 1azs_C          374 RVFNDCRDIIQ  384 (402)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999887654

>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2

Probab=98.89  E-value=4e-09  Score=85.90  Aligned_cols=88  Identities=17%  Similarity=0.152  Sum_probs=58.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEec------------------CeEEEEeCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLVN------------------KSWYIVDLPGYGFA   98 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~~------------------~~~~liDtpg~~~~   98 (219)
                      ..+++|+|++|+|||||+|+|++.. .+...+.+++|....  ....+                  ..+.++|+||+...
T Consensus        20 g~~vgiVG~pnaGKSTL~n~Ltg~~-~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~   98 (392)
T 1ni3_A           20 NLKTGIVGMPNVGKSTFFRAITKSV-LGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKG   98 (392)
T ss_dssp             CCEEEEEECSSSSHHHHHHHHHHST-TTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCC
T ss_pred             CCEEEEECCCCCCHHHHHHHHHCCC-cccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccC
Confidence            5799999999999999999999963 446677777666432  23333                  24789999997532


Q ss_pred             CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      ...  ++ .+.......++   .+|++++|+|+.+
T Consensus        99 ~s~--~e-~L~~~fl~~ir---~~d~il~Vvd~~~  127 (392)
T 1ni3_A           99 AST--GV-GLGNAFLSHVR---AVDAIYQVVRAFD  127 (392)
T ss_dssp             CCS--SS-SSCHHHHHHHT---TCSEEEEEEECCC
T ss_pred             CcH--HH-HHHHHHHHHHH---HHHHHHHHHhccc
Confidence            221  11 11111122333   4899999999874

>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B

Probab=98.85  E-value=4.3e-08  Score=84.51  Aligned_cols=79  Identities=18%  Similarity=0.196  Sum_probs=49.4

Q ss_pred             eEEEEeCCCCCC---CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-CCcccHHHHHHhccCCCcEEEEEEccc
Q 027757           86 SWYIVDLPGYGF---AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGRNNIPLTFVFTKCD  161 (219)
Q Consensus        86 ~~~liDtpg~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~~~~p~iiv~nK~D  161 (219)
                      ++.++|.||+..   ...+...+.....+...|....  ...+++++..... .+.....+...+...+.+.++|+||.|
T Consensus       148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~--~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~D  225 (608)
T 3szr_A          148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQ--ETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPD  225 (608)
T ss_dssp             CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSS--SCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGG
T ss_pred             ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcC--CCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchh
Confidence            589999999764   2334445555566666665442  2345666655432 222235667777777889999999999


Q ss_pred             ccccc
Q 027757          162 KMKVA  166 (219)
Q Consensus       162 ~~~~~  166 (219)
                      +.+..
T Consensus       226 lv~~g  230 (608)
T 3szr_A          226 LVDKG  230 (608)
T ss_dssp             GSSSS
T ss_pred             hcCcc
Confidence            87543

>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}

Probab=98.80  E-value=2.9e-08  Score=81.80  Aligned_cols=118  Identities=16%  Similarity=0.093  Sum_probs=65.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-----cccccc--CC--------------CCeeEEee-EE---------------
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK-----ELALTS--KK--------------PGKTQLIN-HF---------------   81 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~--~~--------------~~~t~~~~-~~---------------   81 (219)
                      +..|+++|++|+||||++..|...-     ......  +.              .+...... ..               
T Consensus       100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~  179 (443)
T 3dm5_A          100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK  179 (443)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred             CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence            4578999999999999999998420     011000  00              01111100 00               


Q ss_pred             EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccc
Q 027757           82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD  161 (219)
Q Consensus        82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  161 (219)
                      ..+..++++||||....  +.....+...+..    . ..+|.+++|+|+..+...  ......+.+.-.+..+|+||+|
T Consensus       180 ~~~~DvVIIDTaGrl~~--d~~lm~el~~i~~----~-~~pd~vlLVvDA~~gq~a--~~~a~~f~~~~~i~gVIlTKlD  250 (443)
T 3dm5_A          180 SKGVDIIIVDTAGRHKE--DKALIEEMKQISN----V-IHPHEVILVIDGTIGQQA--YNQALAFKEATPIGSIIVTKLD  250 (443)
T ss_dssp             HTTCSEEEEECCCCSSC--CHHHHHHHHHHHH----H-HCCSEEEEEEEGGGGGGH--HHHHHHHHHSCTTEEEEEECCS
T ss_pred             hCCCCEEEEECCCcccc--hHHHHHHHHHHHH----h-hcCceEEEEEeCCCchhH--HHHHHHHHhhCCCeEEEEECCC
Confidence            01257899999996422  1111111122211    1 126889999999864322  3334445544456779999999


Q ss_pred             cccc
Q 027757          162 KMKV  165 (219)
Q Consensus       162 ~~~~  165 (219)
                      ....
T Consensus       251 ~~~~  254 (443)
T 3dm5_A          251 GSAK  254 (443)
T ss_dssp             SCSS
T ss_pred             Cccc
Confidence            8653

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=98.80  E-value=9.2e-09  Score=81.25  Aligned_cols=88  Identities=17%  Similarity=0.190  Sum_probs=60.0

Q ss_pred             HHhhccCCccEEEEEEeCCCCC-Cccc-HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          114 GYFLNRESLVGVLLLIDASVPP-QKID-LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~-~~~~-~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .++.+   +|++++|+|++++. +... .+.+..+...++|+++|+||+|+.+...    ....+++.+.+...   ..+
T Consensus        75 ~~~~n---aD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~~~----v~~~~~~~~~~~~~---g~~  144 (302)
T 2yv5_A           75 PKVAN---VDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNEEE----KKELERWISIYRDA---GYD  144 (302)
T ss_dssp             TEEES---CCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCHHH----HHHHHHHHHHHHHT---TCE
T ss_pred             HHHHh---cCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCccc----cHHHHHHHHHHHHC---CCe
Confidence            45555   89999999999875 4332 1233344457899999999999976420    01133333333322   258


Q ss_pred             eEEeecCCCCChHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMS  211 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~  211 (219)
                      ++++||+++.|++++++.+.
T Consensus       145 ~~~~SA~~g~gi~~L~~~l~  164 (302)
T 2yv5_A          145 VLKVSAKTGEGIDELVDYLE  164 (302)
T ss_dssp             EEECCTTTCTTHHHHHHHTT
T ss_pred             EEEEECCCCCCHHHHHhhcc
Confidence            99999999999999998764

>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*

Probab=98.78  E-value=8.7e-09  Score=87.91  Aligned_cols=99  Identities=19%  Similarity=0.155  Sum_probs=55.6

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccC-CCCeeEEeeEEE------ecCeEEEEeCCCCCCCCC-CcchhhhH
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSK-KPGKTQLINHFL------VNKSWYIVDLPGYGFAKA-PDVTRMDW  108 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~------~~~~~~liDtpg~~~~~~-~~~~~~~~  108 (219)
                      ....+|+|+|.+|+|||||+|+|+|....-.... +.++|..+..+.      .+..+.++||||+..... +.....  
T Consensus        36 ~~~~~VaivG~pnvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~--  113 (592)
T 1f5n_A           36 QPMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDS--  113 (592)
T ss_dssp             SBEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHH--
T ss_pred             CCCcEEEEECCCCCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHH--
Confidence            4467899999999999999999999742111221 123333332221      234799999999864322 111111  


Q ss_pred             HHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHH
Q 027757          109 SSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCA  143 (219)
Q Consensus       109 ~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~  143 (219)
                      ..+.-..+..    +  ++|+|+.......+...+
T Consensus       114 ~~fala~lls----s--~lv~n~~~~i~~~dl~~l  142 (592)
T 1f5n_A          114 WIFALAVLLS----S--TFVYNSIGTINQQAMDQL  142 (592)
T ss_dssp             HHHHHHHHHC----S--EEEEEEESCSSHHHHHTT
T ss_pred             HHHHHHHHhc----C--eEEEECCCCccHHHHHHH
Confidence            1111111112    2  677787776666665433

>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B

Probab=98.73  E-value=1.2e-08  Score=84.18  Aligned_cols=115  Identities=17%  Similarity=0.168  Sum_probs=64.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-----ccccc------------------------CCCCeeEEe--------eEE
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE-----LALTS------------------------KKPGKTQLI--------NHF   81 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~-----~~~~~------------------------~~~~~t~~~--------~~~   81 (219)
                      ...|+++|++|+||||+++.|.+.-.     ....+                        +..+++.+.        ...
T Consensus        99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~a~~qL~~~~~~~gv~v~~~~~~~~dp~~i~~~~l~~~  178 (432)
T 2v3c_C           99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPAAYEQLKQLAEKIHVPIYGDETRTKSPVDIVKEGMEKF  178 (432)
T ss_dssp             CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTTGGGSSHHHHHHSSCCEECCSSSCCSSSTTHHHHHHTT
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCchHHHHHHHhhhccCcceEecCCCCCCHHHHHHHHHHHh
Confidence            45799999999999999999987410     00000                        000011110        001


Q ss_pred             EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-c-EEEEEEc
Q 027757           82 LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-P-LTFVFTK  159 (219)
Q Consensus        82 ~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p-~iiv~nK  159 (219)
                       .+..++++||||....     ....+..+. . +.....+|.+++|+|+..+..  .....+.+.. .. | ..+|+||
T Consensus       179 -~~~D~vIIDT~G~~~~-----~~~l~~~l~-~-i~~~~~~d~vllVvda~~g~~--~~~~~~~~~~-~~~~i~gvVlnK  247 (432)
T 2v3c_C          179 -KKADVLIIDTAGRHKE-----EKGLLEEMK-Q-IKEITNPDEIILVIDGTIGQQ--AGIQAKAFKE-AVGEIGSIIVTK  247 (432)
T ss_dssp             -SSCSEEEEECCCSCSS-----HHHHHHHHH-H-TTSSSCCSEEEEEEEGGGGGG--HHHHHHHHHT-TSCSCEEEEEEC
T ss_pred             -hCCCEEEEcCCCCccc-----cHHHHHHHH-H-HHHHhcCcceeEEeeccccHH--HHHHHHHHhh-cccCCeEEEEeC
Confidence             3457999999996421     111122221 1 222224799999999976531  1222333332 35 5 8999999


Q ss_pred             ccccc
Q 027757          160 CDKMK  164 (219)
Q Consensus       160 ~D~~~  164 (219)
                      +|...
T Consensus       248 ~D~~~  252 (432)
T 2v3c_C          248 LDGSA  252 (432)
T ss_dssp             SSSCS
T ss_pred             CCCcc
Confidence            99754

>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A

Probab=98.59  E-value=3.1e-07  Score=75.61  Aligned_cols=99  Identities=17%  Similarity=0.055  Sum_probs=54.2

Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      +..++++||||......+.....+...+...    . ..|.+++|+|+..+..  .......+.+.-.+..+|+||+|..
T Consensus       179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~----~-~pd~vlLVlDa~~gq~--a~~~a~~f~~~~~~~gVIlTKlD~~  251 (433)
T 3kl4_A          179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDV----L-KPDDVILVIDASIGQK--AYDLASRFHQASPIGSVIITKMDGT  251 (433)
T ss_dssp             TCSEEEEEECCCSSSCCTTHHHHHHHHHHHH----H-CCSEEEEEEEGGGGGG--GHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred             CCCEEEEECCCCccccCCHHHHHHHHHHHHh----h-CCcceEEEEeCccchH--HHHHHHHHhcccCCcEEEEeccccc
Confidence            3478999999964311222222222222221    1 1588999999986422  2334444444345688999999976


Q ss_pred             ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCCh
Q 027757          164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGR  203 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v  203 (219)
                      ...      ..........+      .|+.+++.  |.++
T Consensus       252 a~~------G~als~~~~~g------~Pi~fig~--Ge~v  277 (433)
T 3kl4_A          252 AKG------GGALSAVVATG------ATIKFIGT--GEKI  277 (433)
T ss_dssp             SCH------HHHHHHHHHHT------CEEEEEEC--CSSS
T ss_pred             ccc------hHHHHHHHHHC------CCEEEEEC--CCCh
Confidence            431      12222333222      57788875  5554

>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*

Probab=98.57  E-value=8.4e-08  Score=74.16  Aligned_cols=79  Identities=11%  Similarity=0.055  Sum_probs=58.6

Q ss_pred             cCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecC
Q 027757          119 RESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV  198 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  198 (219)
                      ...+|+++.|+|+.++.+.....+. ++   ++|.++|+||+|+.+.       ...+.+.+.+...   ..++ ++||+
T Consensus        19 l~~~D~vl~VvDar~P~~~~~~~l~-ll---~k~~iivlNK~DL~~~-------~~~~~~~~~~~~~---g~~v-~iSa~   83 (262)
T 3cnl_A           19 LRLVNTVVEVRDARAPFATSAYGVD-FS---RKETIILLNKVDIADE-------KTTKKWVEFFKKQ---GKRV-ITTHK   83 (262)
T ss_dssp             HTTCSEEEEEEETTSTTTTSCTTSC-CT---TSEEEEEEECGGGSCH-------HHHHHHHHHHHHT---TCCE-EECCT
T ss_pred             HhhCCEEEEEeeCCCCCcCcChHHH-hc---CCCcEEEEECccCCCH-------HHHHHHHHHHHHc---CCeE-EEECC
Confidence            3448999999999998776543322 33   8999999999999864       3445555555432   2467 99999


Q ss_pred             CCCChHHHHHHHHH
Q 027757          199 TGLGRDELLLHMSQ  212 (219)
Q Consensus       199 ~~~~v~el~~~l~~  212 (219)
                      ++.|++++++++.+
T Consensus        84 ~~~gi~~L~~~l~~   97 (262)
T 3cnl_A           84 GEPRKVLLKKLSFD   97 (262)
T ss_dssp             TSCHHHHHHHHCCC
T ss_pred             CCcCHHHHHHHHHH
Confidence            99999999987643

>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F

Probab=98.35  E-value=1.7e-06  Score=67.96  Aligned_cols=73  Identities=22%  Similarity=0.109  Sum_probs=39.4

Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccc
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDK  162 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~  162 (219)
                      +..++++||||......+   ......+...  .....+|.+++|+|+...  .......+.+.+ ..| ..+|+||+|.
T Consensus       180 ~~D~ViIDTpg~~~~~~~---~~l~~el~~i--~~~~~~d~vllVvda~~g--~~~~~~~~~~~~-~~~i~gvVlnk~D~  251 (297)
T 1j8m_F          180 KMEIIIVDTAGRHGYGEE---AALLEEMKNI--YEAIKPDEVTLVIDASIG--QKAYDLASKFNQ-ASKIGTIIITKMDG  251 (297)
T ss_dssp             TCSEEEEECCCSCCTTCH---HHHHHHHHHH--HHHHCCSEEEEEEEGGGG--GGHHHHHHHHHH-TCTTEEEEEECGGG
T ss_pred             CCCEEEEeCCCCcccccH---HHHHHHHHHH--HHHhcCCEEEEEeeCCch--HHHHHHHHHHHh-hCCCCEEEEeCCCC
Confidence            347999999996431010   0111111110  011127899999999753  122333333333 356 7889999997


Q ss_pred             cc
Q 027757          163 MK  164 (219)
Q Consensus       163 ~~  164 (219)
                      ..
T Consensus       252 ~~  253 (297)
T 1j8m_F          252 TA  253 (297)
T ss_dssp             CT
T ss_pred             Cc
Confidence            53

>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*

Probab=98.25  E-value=7e-06  Score=65.37  Aligned_cols=142  Identities=15%  Similarity=0.078  Sum_probs=74.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-----------------------CeeEEeeE---E-----------
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKP-----------------------GKTQLINH---F-----------   81 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-----------------------~~t~~~~~---~-----------   81 (219)
                      .-.++++|+.|+||||+++.+.+.. .+ .....                       +.......   .           
T Consensus       129 g~vi~lvG~nGaGKTTll~~Lag~l-~~-~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l~~  206 (328)
T 3e70_C          129 PYVIMFVGFNGSGKTTTIAKLANWL-KN-HGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAIQH  206 (328)
T ss_dssp             SEEEEEECCTTSSHHHHHHHHHHHH-HH-TTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHHH-Hh-cCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHHHH
Confidence            3468999999999999999998741 11 10000                       00000000   0           


Q ss_pred             --EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEc
Q 027757           82 --LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK  159 (219)
Q Consensus        82 --~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK  159 (219)
                        ..+..+.++||+|........  ...+..+... + .   .|-.++++|+.....  -....+.+.+.-....+++||
T Consensus       207 ~~~~~~d~vliDtaG~~~~~~~l--~~eL~~i~ra-l-~---~de~llvLDa~t~~~--~~~~~~~~~~~~~it~iilTK  277 (328)
T 3e70_C          207 AKARGIDVVLIDTAGRSETNRNL--MDEMKKIARV-T-K---PNLVIFVGDALAGNA--IVEQARQFNEAVKIDGIILTK  277 (328)
T ss_dssp             HHHHTCSEEEEEECCSCCTTTCH--HHHHHHHHHH-H-C---CSEEEEEEEGGGTTH--HHHHHHHHHHHSCCCEEEEEC
T ss_pred             HHhccchhhHHhhccchhHHHHH--HHHHHHHHHH-h-c---CCCCEEEEecHHHHH--HHHHHHHHHHhcCCCEEEEeC
Confidence              012357889999974322221  1111221111 1 1   588899999876421  123333333222345788999


Q ss_pred             ccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757          160 CDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       160 ~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      .|.....      -..-......+      .|+.+++  +|.++++
T Consensus       278 lD~~a~~------G~~l~~~~~~~------~pi~~i~--~Ge~v~d  309 (328)
T 3e70_C          278 LDADARG------GAALSISYVID------APILFVG--VGQGYDD  309 (328)
T ss_dssp             GGGCSCC------HHHHHHHHHHT------CCEEEEE--CSSSTTC
T ss_pred             cCCccch------hHHHHHHHHHC------CCEEEEe--CCCCccc
Confidence            9964321      12233333333      5888887  5655544

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=98.16  E-value=1.5e-06  Score=68.46  Aligned_cols=85  Identities=18%  Similarity=0.192  Sum_probs=58.7

Q ss_pred             cCCccEEEEEEeCCCCCCcccHHHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEe
Q 027757          119 RESLVGVLLLIDASVPPQKIDLDCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT  195 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  195 (219)
                      ...+|.+++|+|+.+|....+ .+-+++   ...++|.++|+||+|+.+...   ..+..+++.+.+...   ..+++.+
T Consensus        84 ~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~~~---~~~~~~~~~~~y~~~---g~~v~~~  156 (307)
T 1t9h_A           84 ICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIEDQD---TEDTIQAYAEDYRNI---GYDVYLT  156 (307)
T ss_dssp             EECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHHH---TCCEEEC
T ss_pred             HHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCchhh---hHHHHHHHHHHHHhC---CCeEEEE
Confidence            344899999999998877665 333444   347899999999999986420   001245555555332   1589999


Q ss_pred             ecCCCCChHHHHHHH
Q 027757          196 SSVTGLGRDELLLHM  210 (219)
Q Consensus       196 Sa~~~~~v~el~~~l  210 (219)
                      ||.++.|+++|+...
T Consensus       157 sa~~~~g~~~L~~~~  171 (307)
T 1t9h_A          157 SSKDQDSLADIIPHF  171 (307)
T ss_dssp             CHHHHTTCTTTGGGG
T ss_pred             ecCCCCCHHHHHhhc
Confidence            999999988877543

>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*

Probab=98.05  E-value=1e-05  Score=66.94  Aligned_cols=25  Identities=24%  Similarity=0.356  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...-|.|+|++++|||||+|+|++.
T Consensus        66 ~v~vVsV~G~~~~GKStLLN~llg~   90 (447)
T 3q5d_A           66 EVVAVSVAGAFRKGKSFLMDFMLRY   90 (447)
T ss_dssp             BEEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             ceEEEEEECCCCCcHHHHHHHHhhh
Confidence            3456889999999999999999973

>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10

Probab=97.99  E-value=1.6e-05  Score=62.66  Aligned_cols=23  Identities=17%  Similarity=0.297  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.|+++|++|+||||++..|.+.
T Consensus       105 ~vi~ivG~~GsGKTTl~~~LA~~  127 (306)
T 1vma_A          105 FVIMVVGVNGTGKTTSCGKLAKM  127 (306)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHHH
Confidence            35889999999999999988864

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=97.94  E-value=2.6e-06  Score=67.08  Aligned_cols=56  Identities=27%  Similarity=0.336  Sum_probs=32.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~~   97 (219)
                      -.++|+|++|+|||||+|.|.+.. ........       .+|......... ...++||||+..
T Consensus       174 ~~~~lvG~sG~GKSTLln~L~g~~-~~~~G~I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~~  236 (307)
T 1t9h_A          174 KTTVFAGQSGVGKSSLLNAISPEL-GLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS  236 (307)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred             CEEEEECCCCCCHHHHHHHhcccc-cccccceeeecCCCcccccHHHHhhcC-CEEEecCCCccc
Confidence            489999999999999999999862 22222111       233322222222 457899999764

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.93  E-value=2.8e-05  Score=62.45  Aligned_cols=82  Identities=16%  Similarity=0.164  Sum_probs=53.8

Q ss_pred             CCccEEEEEEeCCCCCCcccHHHHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          120 ESLVGVLLLIDASVPPQKIDLDCANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      ..+|.+++| ++..|..... .+-+++   ...++|.++|+||+|+.+.+.    .+..+++...+..   ...+++++|
T Consensus       129 anvD~v~iv-~a~~P~~~~~-~i~r~L~~a~~~~~~~iivlNK~DL~~~~~----~~~~~~~~~~y~~---~G~~v~~~S  199 (358)
T 2rcn_A          129 ANIDQIVIV-SAILPELSLN-IIDRYLVGCETLQVEPLIVLNKIDLLDDEG----MDFVNEQMDIYRN---IGYRVLMVS  199 (358)
T ss_dssp             ECCCEEEEE-EESTTTCCHH-HHHHHHHHHHHHTCEEEEEEECGGGCCHHH----HHHHHHHHHHHHT---TTCCEEECB
T ss_pred             hcCCEEEEE-EeCCCCCCHH-HHHHHHHHHHhcCCCEEEEEECccCCCchh----HHHHHHHHHHHHh---CCCcEEEEe
Confidence            447888866 4555654433 233343   346788999999999986520    1124455555443   235799999


Q ss_pred             cCCCCChHHHHHHH
Q 027757          197 SVTGLGRDELLLHM  210 (219)
Q Consensus       197 a~~~~~v~el~~~l  210 (219)
                      +.++.|++++...+
T Consensus       200 a~~~~gl~~L~~~~  213 (358)
T 2rcn_A          200 SHTQDGLKPLEEAL  213 (358)
T ss_dssp             TTTTBTHHHHHHHH
T ss_pred             cCCCcCHHHHHHhc
Confidence            99999999988654

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=97.87  E-value=2.3e-05  Score=61.67  Aligned_cols=55  Identities=27%  Similarity=0.332  Sum_probs=34.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCC-------eeEEeeEEEecCeEEEEeCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPG-------KTQLINHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~-------~t~~~~~~~~~~~~~liDtpg~~   96 (219)
                      ..++++|++|+|||||+|.+. . ..+.......       ++.............++|+||+.
T Consensus       166 ~i~~l~G~sG~GKSTLln~l~-~-~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~  227 (302)
T 2yv5_A          166 FICILAGPSGVGKSSILSRLT-G-EELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFS  227 (302)
T ss_dssp             CEEEEECSTTSSHHHHHHHHH-S-CCCCCSCC---------CCCCEEEEEETTTEEEESSCCCS
T ss_pred             cEEEEECCCCCCHHHHHHHHH-H-hhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcC
Confidence            478999999999999999999 5 2332222211       22222222233345788999975

>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9

Probab=97.80  E-value=3.3e-05  Score=63.77  Aligned_cols=22  Identities=18%  Similarity=0.264  Sum_probs=19.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~   60 (219)
                      ...|+++|.+|+||||++..|.
T Consensus       100 ~~vI~ivG~~GvGKTT~a~~LA  121 (433)
T 2xxa_A          100 PAVVLMAGLQGAGKTTSVGKLG  121 (433)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHH
Confidence            4468889999999999999988

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=97.77  E-value=1.7e-05  Score=63.77  Aligned_cols=57  Identities=32%  Similarity=0.382  Sum_probs=34.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC---C----eeEEeeEEEecCeEEEEeCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP---G----KTQLINHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~---~----~t~~~~~~~~~~~~~liDtpg~~   96 (219)
                      -.++|+|++|+|||||+|.|.+...........   +    ++.............++|+||+.
T Consensus       216 ~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~tt~~~~i~~v~q~~~l~dtpgv~  279 (358)
T 2rcn_A          216 RISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHTTTAARLYHFPHGGDVIDSPGVR  279 (358)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHCCSSCCCCC-------------CCCEEEECTTSCEEEECHHHH
T ss_pred             CEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccceEEEEEEEECCCCEecCcccHH
Confidence            379999999999999999999963202211111   1    22222333344445678999964

>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8

Probab=97.71  E-value=2.6e-05  Score=61.39  Aligned_cols=56  Identities=30%  Similarity=0.342  Sum_probs=33.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCC-------CeeEEeeEEEecCeEEEEeCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKP-------GKTQLINHFLVNKSWYIVDLPGYG   96 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~-------~~t~~~~~~~~~~~~~liDtpg~~   96 (219)
                      -.++++|++|+|||||+|.+.+.. .+......       .++.............++|+||+.
T Consensus       170 eiv~l~G~sG~GKSTll~~l~g~~-~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~  232 (301)
T 1u0l_A          170 KISTMAGLSGVGKSSLLNAINPGL-KLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA  232 (301)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTC-CCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred             CeEEEECCCCCcHHHHHHHhcccc-cccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence            478999999999999999999863 22211111       122222222222345788999964

>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*

Probab=97.65  E-value=0.0002  Score=56.16  Aligned_cols=24  Identities=17%  Similarity=0.360  Sum_probs=20.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.++++|+.|+||||++..|.+.
T Consensus       105 g~vi~lvG~~GsGKTTl~~~LA~~  128 (296)
T 2px0_A          105 SKYIVLFGSTGAGKTTTLAKLAAI  128 (296)
T ss_dssp             SSEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999988753

>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A

Probab=97.58  E-value=0.0015  Score=51.78  Aligned_cols=23  Identities=17%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+++|++|+||||++..|.+.
T Consensus       106 ~vI~ivG~~G~GKTT~~~~LA~~  128 (320)
T 1zu4_A          106 NIFMLVGVNGTGKTTSLAKMANY  128 (320)
T ss_dssp             EEEEEESSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46889999999999999988753

>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0

Probab=97.55  E-value=5.4e-05  Score=55.71  Aligned_cols=26  Identities=35%  Similarity=0.641  Sum_probs=22.5

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .....|+|+|++|+|||||+++|.+.
T Consensus        17 ~~g~~ivl~GPSGaGKsTL~~~L~~~   42 (197)
T 3ney_A           17 QGRKTLVLIGASGVGRSHIKNALLSQ   42 (197)
T ss_dssp             CSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEECcCCCCHHHHHHHHHhh
Confidence            34457899999999999999999985

>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A

Probab=97.52  E-value=0.00013  Score=59.98  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=19.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++++|+.|+||||++..|.+.
T Consensus        99 ~vi~i~G~~GsGKTT~~~~LA~~  121 (425)
T 2ffh_A           99 NLWFLVGLQGSGKTTTAAKLALY  121 (425)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            35888999999999999988854

>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1

Probab=97.45  E-value=6.3e-05  Score=54.46  Aligned_cols=23  Identities=30%  Similarity=0.608  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|+|++|||||||++.|.+.
T Consensus         6 ~~i~i~GpsGsGKSTL~~~L~~~   28 (180)
T 1kgd_A            6 KTLVLLGAHGVGRRHIKNTLITK   28 (180)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999985

>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11

Probab=97.44  E-value=7.9e-05  Score=53.95  Aligned_cols=22  Identities=32%  Similarity=0.681  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +++|+|++|+|||||++.+.+.
T Consensus         2 ~i~l~G~nGsGKTTLl~~l~g~   23 (178)
T 1ye8_A            2 KIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999985

>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1

Probab=97.43  E-value=6.9e-05  Score=55.16  Aligned_cols=23  Identities=30%  Similarity=0.514  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|+|++|||||||++.+.+.
T Consensus         5 ~~i~lvGpsGaGKSTLl~~L~~~   27 (198)
T 1lvg_A            5 RPVVLSGPSGAGKSTLLKKLFQE   27 (198)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999984

>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*

Probab=97.42  E-value=0.00059  Score=53.42  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++++|+.|+||||++..+.+.
T Consensus        99 ~~i~i~g~~G~GKTT~~~~la~~  121 (295)
T 1ls1_A           99 NLWFLVGLQGSGKTTTAAKLALY  121 (295)
T ss_dssp             EEEEEECCTTTTHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36888999999999999988864

>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A

Probab=97.42  E-value=6.5e-05  Score=54.78  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|+||+|+|||||+++|+..
T Consensus         4 IVi~GPSG~GK~Tl~~~L~~~   24 (186)
T 1ex7_A            4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999875

>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A

Probab=97.40  E-value=0.0001  Score=61.62  Aligned_cols=26  Identities=19%  Similarity=0.267  Sum_probs=22.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .....|+++|.+|+||||+.++|...
T Consensus        37 ~~~~~IvlvGlpGsGKSTia~~La~~   62 (469)
T 1bif_A           37 NCPTLIVMVGLPARGKTYISKKLTRY   62 (469)
T ss_dssp             -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            33568999999999999999999875

>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*

Probab=97.39  E-value=0.0019  Score=49.41  Aligned_cols=23  Identities=26%  Similarity=0.349  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|++.|.+||||||+.+.|...
T Consensus         5 ~lIvl~G~pGSGKSTla~~La~~   27 (260)
T 3a4m_A            5 MLIILTGLPGVGKSTFSKNLAKI   27 (260)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999864

>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}

Probab=97.28  E-value=0.00013  Score=53.67  Aligned_cols=23  Identities=43%  Similarity=0.576  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|||||||++.|.+.
T Consensus         8 ~ii~l~Gp~GsGKSTl~~~L~~~   30 (205)
T 3tr0_A            8 NLFIISAPSGAGKTSLVRALVKA   30 (205)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            36899999999999999999985

>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A

Probab=97.27  E-value=0.00013  Score=53.97  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.+.
T Consensus        22 i~~l~GpnGsGKSTLl~~l~gl   43 (207)
T 1znw_A           22 VVVLSGPSAVGKSTVVRCLRER   43 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            6899999999999999999985

>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*

Probab=97.27  E-value=0.00042  Score=50.80  Aligned_cols=64  Identities=16%  Similarity=0.047  Sum_probs=42.6

Q ss_pred             cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccC-----CCcEEEEEE
Q 027757           84 NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRN-----NIPLTFVFT  158 (219)
Q Consensus        84 ~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~-----~~p~iiv~n  158 (219)
                      .+.++++|||+...            ......+..   +|.+|+++..+... ..-....+.+...     +.++.+|+|
T Consensus        75 ~yD~viiD~~~~~~------------~~~~~~l~~---ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N  138 (206)
T 4dzz_A           75 DYDFAIVDGAGSLS------------VITSAAVMV---SDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLIT  138 (206)
T ss_dssp             TSSEEEEECCSSSS------------HHHHHHHHH---CSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEEC
T ss_pred             CCCEEEEECCCCCC------------HHHHHHHHH---CCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEe
Confidence            35789999998431            111223333   79999999988765 4444555665542     467899999


Q ss_pred             ccccc
Q 027757          159 KCDKM  163 (219)
Q Consensus       159 K~D~~  163 (219)
                      ++|..
T Consensus       139 ~~~~~  143 (206)
T 4dzz_A          139 RKIEM  143 (206)
T ss_dssp             SBCTT
T ss_pred             ccCCC
Confidence            99854

>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*

Probab=97.27  E-value=0.00014  Score=54.54  Aligned_cols=23  Identities=39%  Similarity=0.563  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      --++|+|++|||||||++.+.+.
T Consensus        17 ~ii~l~GpsGsGKSTLlk~L~g~   39 (219)
T 1s96_A           17 TLYIVSAPSGAGKSSLIQALLKT   39 (219)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhcc
Confidence            36899999999999999999985

>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}

Probab=97.26  E-value=0.00013  Score=54.45  Aligned_cols=23  Identities=39%  Similarity=0.582  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|||||||++.+.+.
T Consensus        24 ~~~~lvGpsGsGKSTLl~~L~g~   46 (218)
T 1z6g_A           24 YPLVICGPSGVGKGTLIKKLLNE   46 (218)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHhh
Confidence            36899999999999999999985

>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25

Probab=97.26  E-value=0.00015  Score=52.69  Aligned_cols=23  Identities=26%  Similarity=0.378  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|||||||++.|.+.
T Consensus        10 ~~i~l~G~~GsGKSTl~~~La~~   32 (191)
T 1zp6_A           10 NILLLSGHPGSGKSTIAEALANL   32 (191)
T ss_dssp             EEEEEEECTTSCHHHHHHHHHTC
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            35899999999999999999985

>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}

Probab=97.19  E-value=0.00019  Score=53.11  Aligned_cols=23  Identities=26%  Similarity=0.406  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-|+|+|++|||||||++.|.+.
T Consensus         9 ~~i~l~GpsGsGKsTl~~~L~~~   31 (208)
T 3tau_A            9 LLIVLSGPSGVGKGTVREAVFKD   31 (208)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHS
T ss_pred             cEEEEECcCCCCHHHHHHHHHhh
Confidence            46899999999999999999986

>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}

Probab=97.19  E-value=0.00018  Score=53.30  Aligned_cols=24  Identities=38%  Similarity=0.468  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        22 g~~v~I~G~sGsGKSTl~~~l~~~   45 (208)
T 3c8u_A           22 RQLVALSGAPGSGKSTLSNPLAAA   45 (208)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999985

>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*

Probab=97.14  E-value=0.00022  Score=53.99  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        33 ~~~iiG~nGsGKSTLl~~l~Gl   54 (235)
T 3tif_A           33 FVSIMGPSGSGKSTMLNIIGCL   54 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999999995

>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A

Probab=97.12  E-value=0.00025  Score=50.28  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++++|+.|||||||++.+.+.
T Consensus        35 ~v~L~G~nGaGKTTLlr~l~g~   56 (158)
T 1htw_A           35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            5899999999999999999985

>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*

Probab=97.11  E-value=0.00025  Score=50.85  Aligned_cols=21  Identities=24%  Similarity=0.430  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      -++++|++|||||||++.+.+
T Consensus        11 i~~l~G~nGsGKSTl~~~~~~   31 (171)
T 4gp7_A           11 LVVLIGSSGSGKSTFAKKHFK   31 (171)
T ss_dssp             EEEEECCTTSCHHHHHHHHSC
T ss_pred             EEEEECCCCCCHHHHHHHHcc
Confidence            588999999999999998654

>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A

Probab=97.08  E-value=0.00027  Score=53.03  Aligned_cols=22  Identities=36%  Similarity=0.398  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        32 ~~~iiG~nGsGKSTLl~~l~Gl   53 (224)
T 2pcj_A           32 FVSIIGASGSGKSTLLYILGLL   53 (224)
T ss_dssp             EEEEEECTTSCHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999985

>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2

Probab=97.05  E-value=0.00031  Score=50.09  Aligned_cols=23  Identities=22%  Similarity=0.394  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus         5 ~~i~l~G~~GsGKSTl~~~La~~   27 (173)
T 1kag_A            5 RNIFLVGPMGAGKSTIGRQLAQQ   27 (173)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999885

>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}

Probab=97.05  E-value=0.0003  Score=51.66  Aligned_cols=23  Identities=22%  Similarity=0.342  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++||||||+++.|.+.
T Consensus         7 ~~i~l~G~~GsGKSTl~~~L~~~   29 (207)
T 2j41_A            7 LLIVLSGPSGVGKGTVRKRIFED   29 (207)
T ss_dssp             CEEEEECSTTSCHHHHHHHHHHC
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999985

>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}

Probab=97.04  E-value=0.00032  Score=51.71  Aligned_cols=23  Identities=35%  Similarity=0.684  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++||||||+++.|...
T Consensus        13 ~~i~l~G~sGsGKsTl~~~L~~~   35 (204)
T 2qor_A           13 PPLVVCGPSGVGKGTLIKKVLSE   35 (204)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999875

>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12

Probab=97.04  E-value=0.00035  Score=53.07  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|||||||++.+.|-
T Consensus        25 e~~~liG~nGsGKSTLl~~l~Gl   47 (240)
T 2onk_A           25 DYCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEECCCCCCHHHHHHHHhCC
Confidence            36899999999999999999995

>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*

Probab=97.02  E-value=0.00035  Score=51.62  Aligned_cols=23  Identities=35%  Similarity=0.471  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|+.|||||||++.|.+.
T Consensus         7 ~~i~i~G~~GsGKSTl~~~l~~~   29 (211)
T 3asz_A            7 FVIGIAGGTASGKTTLAQALART   29 (211)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999885

>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}

Probab=97.02  E-value=0.00034  Score=54.25  Aligned_cols=22  Identities=41%  Similarity=0.489  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        36 ~~~iiGpnGsGKSTLl~~l~Gl   57 (275)
T 3gfo_A           36 VTAILGGNGVGKSTLFQNFNGI   57 (275)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHcC
Confidence            6899999999999999999995

>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25

Probab=97.02  E-value=0.00034  Score=50.79  Aligned_cols=21  Identities=33%  Similarity=0.471  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      .++|+|++||||||+++.|.+
T Consensus         4 ii~l~G~~GaGKSTl~~~L~~   24 (189)
T 2bdt_A            4 LYIITGPAGVGKSTTCKRLAA   24 (189)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHhc
Confidence            478999999999999999986

>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12

Probab=97.01  E-value=0.00036  Score=52.02  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        37 ~~~iiG~NGsGKSTLlk~l~Gl   58 (214)
T 1sgw_A           37 VVNFHGPNGIGKTTLLKTISTY   58 (214)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            5899999999999999999995

>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A

Probab=97.01  E-value=0.00042  Score=49.22  Aligned_cols=20  Identities=30%  Similarity=0.363  Sum_probs=18.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINAL   59 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l   59 (219)
                      ..|+|.|++||||||+.+.|
T Consensus         2 ~~I~l~G~~GsGKsT~a~~L   21 (179)
T 3lw7_A            2 KVILITGMPGSGKSEFAKLL   21 (179)
T ss_dssp             CEEEEECCTTSCHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHH
Confidence            46899999999999999999

>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}

Probab=97.00  E-value=0.00039  Score=52.69  Aligned_cols=22  Identities=41%  Similarity=0.649  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        33 ~~~i~G~nGsGKSTLl~~l~Gl   54 (237)
T 2cbz_A           33 LVAVVGQVGCGKSSLLSALLAE   54 (237)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTC
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            7899999999999999999995

>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12

Probab=96.99  E-value=0.00041  Score=52.77  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        30 ~~~i~G~nGsGKSTLl~~l~Gl   51 (243)
T 1mv5_A           30 IIAFAGPSGGGKSTIFSLLERF   51 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999985

>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12

Probab=96.99  E-value=0.00037  Score=53.63  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        34 ~~~liG~nGsGKSTLlk~l~Gl   55 (262)
T 1b0u_A           34 VISIIGSSGSGKSTFLRCINFL   55 (262)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999995

>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}

Probab=96.99  E-value=0.00037  Score=53.73  Aligned_cols=22  Identities=36%  Similarity=0.527  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        39 ~~~liG~nGsGKSTLl~~l~Gl   60 (266)
T 4g1u_C           39 MVAIIGPNGAGKSTLLRLLTGY   60 (266)
T ss_dssp             EEEEECCTTSCHHHHHHHHTSS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999999995

>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*

Probab=96.99  E-value=0.00041  Score=52.91  Aligned_cols=22  Identities=41%  Similarity=0.569  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        37 ~~~i~G~nGsGKSTLl~~l~Gl   58 (247)
T 2ff7_A           37 VIGIVGRSGSGKSTLTKLIQRF   58 (247)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999996

>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}

Probab=96.97  E-value=0.00038  Score=53.51  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+|||||++.+.+.
T Consensus        27 ~v~i~Gp~GsGKSTll~~l~g~   48 (261)
T 2eyu_A           27 LILVTGPTGSGKSTTIASMIDY   48 (261)
T ss_dssp             EEEEECSTTCSHHHHHHHHHHH
T ss_pred             EEEEECCCCccHHHHHHHHHHh
Confidence            6999999999999999999984

>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A

Probab=96.97  E-value=0.00044  Score=52.09  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        36 ~~~i~G~nGsGKSTLl~~l~Gl   57 (229)
T 2pze_A           36 LLAVAGSTGAGKTSLLMMIMGE   57 (229)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A

Probab=96.97  E-value=0.00048  Score=49.60  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.++|+|++|+|||||++++.+.
T Consensus         6 ~~~i~i~G~sGsGKTTl~~~l~~~   29 (174)
T 1np6_A            6 IPLLAFAAWSGTGKTTLLKKLIPA   29 (174)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHh
Confidence            467999999999999999999985

>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*

Probab=96.96  E-value=0.00048  Score=48.96  Aligned_cols=22  Identities=18%  Similarity=0.164  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|++||||||+.+.|...
T Consensus         3 ~i~l~G~~GsGKsT~~~~L~~~   24 (173)
T 3kb2_A            3 LIILEGPDCCFKSTVAAKLSKE   24 (173)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999864

>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}

Probab=96.96  E-value=0.00054  Score=50.26  Aligned_cols=24  Identities=17%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++||||||+++.|.+.
T Consensus        29 g~~i~l~G~~GsGKSTl~~~L~~~   52 (200)
T 4eun_A           29 TRHVVVMGVSGSGKTTIAHGVADE   52 (200)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999874

>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*

Probab=96.96  E-value=0.0004  Score=53.25  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        35 ~~~liG~nGsGKSTLlk~l~Gl   56 (257)
T 1g6h_A           35 VTLIIGPNGSGKSTLINVITGF   56 (257)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999985

>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*

Probab=96.95  E-value=0.00043  Score=54.39  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|+|||||++.|.+-
T Consensus       127 e~vaIvGpsGsGKSTLl~lL~gl  149 (305)
T 2v9p_A          127 NCLAFIGPPNTGKSMLCNSLIHF  149 (305)
T ss_dssp             SEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCcHHHHHHHHhhh
Confidence            47999999999999999999974

>4ido_A Atlastin-1; GTPase, GTP/GDP binding, hydrolase; HET: GDP; 2.09A {Homo sapiens} PDB: 4idn_A* 3q5d_A* 3q5e_A* 4idq_A* 4idp_A* 3qnu_A* 3qof_A*

Probab=96.94  E-value=0.0037  Score=51.61  Aligned_cols=23  Identities=22%  Similarity=0.349  Sum_probs=19.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHh
Q 027757           38 DRPEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~   60 (219)
                      ...-|.|+|+.++|||+|+|.|+
T Consensus        66 ~v~vvsv~G~~~~gks~l~N~ll   88 (457)
T 4ido_A           66 EVVAVSVAGAFRKGKSFLMDFML   88 (457)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHH
T ss_pred             ceEEEEEECCCCCchhHHHHHHH
Confidence            34567799999999999999665

>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A

Probab=96.94  E-value=0.00051  Score=52.13  Aligned_cols=22  Identities=23%  Similarity=0.344  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~   60 (219)
                      ...|+|+|++||||||+++.|.
T Consensus        27 ~~~i~l~G~~GsGKSTl~k~La   48 (246)
T 2bbw_A           27 LLRAVILGPPGSGKGTVCQRIA   48 (246)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999999

>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*

Probab=96.93  E-value=0.00045  Score=53.17  Aligned_cols=22  Identities=27%  Similarity=0.427  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        52 i~~liG~NGsGKSTLlk~l~Gl   73 (263)
T 2olj_A           52 VVVVIGPSGSGKSTFLRCLNLL   73 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEEcCCCCcHHHHHHHHHcC
Confidence            6899999999999999999995

>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11

Probab=96.93  E-value=0.00044  Score=50.48  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.+.
T Consensus         3 ~i~i~G~nG~GKTTll~~l~g~   24 (189)
T 2i3b_A            3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCChHHHHHHHHHhh
Confidence            5899999999999999999985

>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.93  E-value=0.00045  Score=52.43  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        34 ~~~l~G~nGsGKSTLl~~l~Gl   55 (240)
T 1ji0_A           34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}

Probab=96.93  E-value=0.00049  Score=52.88  Aligned_cols=22  Identities=32%  Similarity=0.510  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        48 ~~~i~G~nGsGKSTLl~~l~Gl   69 (260)
T 2ghi_A           48 TCALVGHTGSGKSTIAKLLYRF   69 (260)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            7999999999999999999995

>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12

Probab=96.92  E-value=0.00046  Score=52.89  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        43 i~~l~G~NGsGKSTLlk~l~Gl   64 (256)
T 1vpl_A           43 IFGLIGPNGAGKTTTLRIISTL   64 (256)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999995

>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}

Probab=96.92  E-value=0.00039  Score=51.58  Aligned_cols=22  Identities=27%  Similarity=0.170  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.+-
T Consensus        24 ~~~liG~nGsGKSTLl~~l~Gl   45 (208)
T 3b85_A           24 IVFGLGPAGSGKTYLAMAKAVQ   45 (208)
T ss_dssp             EEEEECCTTSSTTHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999984

>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}

Probab=96.92  E-value=0.00045  Score=51.21  Aligned_cols=66  Identities=6%  Similarity=-0.104  Sum_probs=40.7

Q ss_pred             cCeEEEEeCCCC-CCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-CCCcEEEEEEccc
Q 027757           84 NKSWYIVDLPGY-GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-NNIPLTFVFTKCD  161 (219)
Q Consensus        84 ~~~~~liDtpg~-~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-~~~p~iiv~nK~D  161 (219)
                      .+.++++|||+. ...            .....+..   +|.+|+++.++...-..-....+.+.. .+.++.+|+|++|
T Consensus        67 ~yD~viiD~p~~~~~~------------~~~~~l~~---aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~  131 (209)
T 3cwq_A           67 KYQNIVIDTQARPEDE------------DLEALADG---CDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIP  131 (209)
T ss_dssp             GCSEEEEEEECCCSSS------------HHHHHHHT---SSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBC
T ss_pred             cCCEEEEeCCCCcCcH------------HHHHHHHH---CCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecC
Confidence            357999999985 311            11223333   799999998764222222344455554 3678999999998


Q ss_pred             ccc
Q 027757          162 KMK  164 (219)
Q Consensus       162 ~~~  164 (219)
                      ...
T Consensus       132 ~~~  134 (209)
T 3cwq_A          132 PYP  134 (209)
T ss_dssp             CTT
T ss_pred             Ccc
Confidence            643

>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*

Probab=96.92  E-value=0.00049  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.451  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        31 ~~~l~G~nGsGKSTLlk~l~Gl   52 (250)
T 2d2e_A           31 VHALMGPNGAGKSTLGKILAGD   52 (250)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999994

>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A

Probab=96.91  E-value=0.00056  Score=52.75  Aligned_cols=22  Identities=36%  Similarity=0.531  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        48 ~~~l~G~NGsGKSTLlk~l~Gl   69 (267)
T 2zu0_C           48 VHAIMGPNGSGKSTLSATLAGR   69 (267)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C

Probab=96.90  E-value=0.00054  Score=52.28  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        28 ~~~liG~NGsGKSTLlk~l~Gl   49 (249)
T 2qi9_C           28 ILHLVGPNGAGKSTLLARMAGM   49 (249)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999996

>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*

Probab=96.90  E-value=0.00059  Score=50.90  Aligned_cols=23  Identities=35%  Similarity=0.528  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus         6 ~~i~i~G~~GsGKSTl~~~L~~~   28 (227)
T 1cke_A            6 PVITIDGPSGAGKGTLCKAMAEA   28 (227)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999864

>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*

Probab=96.90  E-value=0.00053  Score=53.02  Aligned_cols=22  Identities=27%  Similarity=0.344  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        47 ~~~i~G~nGsGKSTLlk~l~Gl   68 (271)
T 2ixe_A           47 VTALVGPNGSGKSTVAALLQNL   68 (271)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999995

>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}

Probab=96.89  E-value=0.00055  Score=53.15  Aligned_cols=22  Identities=27%  Similarity=0.520  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        49 ~~~liG~NGsGKSTLlk~l~Gl   70 (279)
T 2ihy_A           49 KWILYGLNGAGKTTLLNILNAY   70 (279)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999985

>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}

Probab=96.89  E-value=0.00064  Score=49.88  Aligned_cols=24  Identities=29%  Similarity=0.398  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++||||||+.+.|.+.
T Consensus        18 ~~~I~l~G~~GsGKSTla~~L~~~   41 (202)
T 3t61_A           18 PGSIVVMGVSGSGKSSVGEAIAEA   41 (202)
T ss_dssp             SSCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}

Probab=96.88  E-value=0.0006  Score=50.03  Aligned_cols=22  Identities=18%  Similarity=0.353  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 027757           40 PEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~   61 (219)
                      .+|+|+|++||||||+.+.|.+
T Consensus         2 ~~i~i~G~~GsGKSTl~~~L~~   23 (204)
T 2if2_A            2 KRIGLTGNIGCGKSTVAQMFRE   23 (204)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCcCHHHHHHHHHH
Confidence            3799999999999999999987

>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1

Probab=96.88  E-value=0.00089  Score=48.45  Aligned_cols=24  Identities=21%  Similarity=0.365  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++|+||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKSTv~~~La~~   33 (184)
T 1y63_A           10 GINILITGTPGTGKTSMAEMIAAE   33 (184)
T ss_dssp             SCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHh
Confidence            468999999999999999999874

>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}

Probab=96.87  E-value=0.00033  Score=52.62  Aligned_cols=23  Identities=22%  Similarity=0.401  Sum_probs=15.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHh-cC
Q 027757           40 PEFAILGRSNVGKSSLINALV-RK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~-~~   62 (219)
                      ..++|+|++|||||||++.|. +.
T Consensus        28 ~ii~l~Gp~GsGKSTl~~~L~~~~   51 (231)
T 3lnc_A           28 VILVLSSPSGCGKTTVANKLLEKQ   51 (231)
T ss_dssp             CEEEEECSCC----CHHHHHHC--
T ss_pred             CEEEEECCCCCCHHHHHHHHHhcC
Confidence            368999999999999999999 74

>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}

Probab=96.85  E-value=0.00061  Score=52.12  Aligned_cols=22  Identities=36%  Similarity=0.640  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        33 ~~~l~G~nGsGKSTLl~~l~Gl   54 (253)
T 2nq2_C           33 ILAVLGQNGCGKSTLLDLLLGI   54 (253)
T ss_dssp             EEEEECCSSSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*

Probab=96.85  E-value=0.00057  Score=50.17  Aligned_cols=23  Identities=35%  Similarity=0.283  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus        26 ~~i~l~G~sGsGKSTl~~~La~~   48 (200)
T 3uie_A           26 CVIWVTGLSGSGKSTLACALNQM   48 (200)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999885

>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*

Probab=96.84  E-value=0.00055  Score=54.04  Aligned_cols=24  Identities=25%  Similarity=0.225  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++|||||||++.+.+.
T Consensus        90 g~ivgI~G~sGsGKSTL~~~L~gl  113 (312)
T 3aez_A           90 PFIIGVAGSVAVGKSTTARVLQAL  113 (312)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEECCCCchHHHHHHHHHhh
Confidence            457999999999999999999985

>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*

Probab=96.84  E-value=0.00079  Score=48.11  Aligned_cols=23  Identities=22%  Similarity=0.468  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus         9 ~~i~l~G~~GsGKSTl~~~l~~~   31 (175)
T 1knq_A            9 HIYVLMGVSGSGKSAVASEVAHQ   31 (175)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHh
Confidence            46999999999999999999874

>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}

Probab=96.83  E-value=0.0003  Score=50.52  Aligned_cols=23  Identities=30%  Similarity=0.520  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|+|++|+|||||++.+.+.
T Consensus         3 ~~v~IvG~SGsGKSTL~~~L~~~   25 (171)
T 2f1r_A            3 LILSIVGTSDSGKTTLITRMMPI   25 (171)
T ss_dssp             CEEEEEESCHHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47899999999999999999985

>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*

Probab=96.83  E-value=0.0005  Score=49.49  Aligned_cols=24  Identities=25%  Similarity=0.430  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++++|++|+|||||+..+.+.
T Consensus        38 g~~~~l~G~~G~GKTtL~~~i~~~   61 (180)
T 3ec2_A           38 GKGLTFVGSPGVGKTHLAVATLKA   61 (180)
T ss_dssp             CCEEEECCSSSSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999885

>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1

Probab=96.83  E-value=0.00067  Score=48.53  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 027757           40 PEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ..|++.|++|+||||+.+.|..
T Consensus         3 ~~I~i~G~~GsGKST~a~~L~~   24 (181)
T 1ly1_A            3 KIILTIGCPGSGKSTWAREFIA   24 (181)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEecCCCCCHHHHHHHHHh
Confidence            3589999999999999999987

>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}

Probab=96.83  E-value=0.00065  Score=52.35  Aligned_cols=22  Identities=23%  Similarity=0.403  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        35 ~~~liG~nGsGKSTLl~~i~Gl   56 (266)
T 2yz2_A           35 CLLVAGNTGSGKSTLLQIVAGL   56 (266)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999985

>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*

Probab=96.81  E-value=0.0004  Score=54.62  Aligned_cols=23  Identities=35%  Similarity=0.592  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        81 e~vaivG~sGsGKSTLl~ll~gl  103 (306)
T 3nh6_A           81 QTLALVGPSGAGKSTILRLLFRF  103 (306)
T ss_dssp             CEEEEESSSCHHHHHHHHHHTTS
T ss_pred             CEEEEECCCCchHHHHHHHHHcC
Confidence            47999999999999999999985

>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*

Probab=96.81  E-value=0.00072  Score=48.39  Aligned_cols=23  Identities=26%  Similarity=0.372  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|++.|++||||||+.+.|...
T Consensus         4 ~~i~l~G~~GsGKST~a~~La~~   26 (178)
T 1qhx_A            4 RMIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46899999999999999999874

>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}

Probab=96.81  E-value=0.00071  Score=49.58  Aligned_cols=23  Identities=30%  Similarity=0.410  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+...|.+.
T Consensus        26 ~~i~l~G~~GsGKsTl~~~La~~   48 (199)
T 3vaa_A           26 VRIFLTGYMGAGKTTLGKAFARK   48 (199)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999864

>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}

Probab=96.80  E-value=0.00073  Score=51.99  Aligned_cols=22  Identities=32%  Similarity=0.539  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        32 ~~~i~G~NGsGKSTLlk~l~Gl   53 (263)
T 2pjz_A           32 KVIILGPNGSGKTTLLRAISGL   53 (263)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7899999999999999999996

>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*

Probab=96.79  E-value=0.00064  Score=50.68  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+|||||++.+++.
T Consensus        27 ~~~l~G~nGsGKSTll~~l~g~   48 (231)
T 4a74_A           27 ITEVFGEFGSGKTQLAHTLAVM   48 (231)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999984

>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.76  E-value=0.0041  Score=51.23  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..|++.||||+|||+|+.++.+.
T Consensus       215 prGvLL~GPPGtGKTllAkAiA~e  238 (437)
T 4b4t_L          215 PKGVLLYGPPGTGKTLLAKAVAAT  238 (437)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999985

>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*

Probab=96.75  E-value=0.0009  Score=48.90  Aligned_cols=22  Identities=32%  Similarity=0.582  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|.+||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsT~~~~L~~~   23 (205)
T 2jaq_A            2 KIAIFGTVGAGKSTISAEISKK   23 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCccCHHHHHHHHHHh
Confidence            6899999999999999999874

>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}

Probab=96.74  E-value=0.00077  Score=54.16  Aligned_cols=22  Identities=32%  Similarity=0.495  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        32 ~~~llGpsGsGKSTLLr~iaGl   53 (359)
T 3fvq_A           32 ILFIIGASGCGKTTLLRCLAGF   53 (359)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            6899999999999999999995

>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1

Probab=96.74  E-value=0.00092  Score=49.14  Aligned_cols=22  Identities=18%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 027757           40 PEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ..|+|+|++||||||+.+.|.+
T Consensus         3 ~~i~l~G~~GsGKST~~~~La~   24 (206)
T 1jjv_A            3 YIVGLTGGIGSGKTTIANLFTD   24 (206)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHT
T ss_pred             cEEEEECCCCCCHHHHHHHHHH
Confidence            3689999999999999999976

>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1

Probab=96.73  E-value=0.00092  Score=48.32  Aligned_cols=22  Identities=23%  Similarity=0.264  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|++|+||||+++.|...
T Consensus         3 ~I~i~G~~GsGKsT~~~~L~~~   24 (194)
T 1nks_A            3 IGIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999874

>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}

Probab=96.72  E-value=0.001  Score=49.31  Aligned_cols=22  Identities=18%  Similarity=0.492  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|.|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3fb4_A            2 NIVLMGLPGAGKGTQAEQIIEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999653

>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*

Probab=96.71  E-value=0.00089  Score=52.28  Aligned_cols=22  Identities=27%  Similarity=0.514  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus        66 ~~~i~G~NGsGKSTLlk~l~Gl   87 (290)
T 2bbs_A           66 LLAVAGSTGAGKTSLLMMIMGE   87 (290)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999999995

>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}

Probab=96.70  E-value=0.0011  Score=47.79  Aligned_cols=24  Identities=21%  Similarity=0.320  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+++|++|+||||+.+.|...
T Consensus         5 ~~~i~l~G~~GsGKst~a~~La~~   28 (185)
T 3trf_A            5 LTNIYLIGLMGAGKTSVGSQLAKL   28 (185)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999764

>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*

Probab=96.70  E-value=0.001  Score=49.00  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+++.|.+.
T Consensus        22 ~~i~i~G~~GsGKSTl~~~L~~~   44 (207)
T 2qt1_A           22 FIIGISGVTNSGKTTLAKNLQKH   44 (207)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTT
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999985

>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1

Probab=96.70  E-value=0.00069  Score=54.62  Aligned_cols=24  Identities=42%  Similarity=0.531  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-+++|+|++|+|||||++.|.+.
T Consensus       170 g~k~~IvG~nGsGKSTLlk~L~gl  193 (365)
T 1lw7_A          170 AKTVAILGGESSGKSVLVNKLAAV  193 (365)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             hCeEEEECCCCCCHHHHHHHHHHH
Confidence            348999999999999999999985

>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A

Probab=96.69  E-value=0.0011  Score=47.83  Aligned_cols=23  Identities=13%  Similarity=0.212  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++||||||+++.|...
T Consensus         4 ~~I~i~G~~GsGKsT~~~~L~~~   26 (192)
T 1kht_A            4 KVVVVTGVPGVGSTTSSQLAMDN   26 (192)
T ss_dssp             CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999764

>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10

Probab=96.69  E-value=0.0011  Score=47.39  Aligned_cols=24  Identities=21%  Similarity=0.423  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.++|+|++|+|||||+++|...
T Consensus         4 ~~~i~i~G~sGsGKTTl~~~L~~~   27 (169)
T 1xjc_A            4 MNVWQVVGYKHSGKTTLMEKWVAA   27 (169)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999874

>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}

Probab=96.69  E-value=0.00065  Score=47.58  Aligned_cols=24  Identities=29%  Similarity=0.405  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++|+|++|+|||||++.+.+.
T Consensus        36 g~~~~l~G~~G~GKTtL~~~i~~~   59 (149)
T 2kjq_A           36 GQFIYVWGEEGAGKSHLLQAWVAQ   59 (149)
T ss_dssp             CSEEEEESSSTTTTCHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            346999999999999999999985

>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}

Probab=96.68  E-value=0.00086  Score=54.04  Aligned_cols=23  Identities=26%  Similarity=0.564  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|+|||||++.+.+.
T Consensus       176 ~~i~ivG~sGsGKSTll~~l~~~  198 (361)
T 2gza_A          176 RVIVVAGETGSGKTTLMKALMQE  198 (361)
T ss_dssp             CCEEEEESSSSCHHHHHHHHHTT
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            47999999999999999999985

>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*

Probab=96.68  E-value=0.001  Score=49.22  Aligned_cols=22  Identities=23%  Similarity=0.450  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (216)
T 3dl0_A            2 NLVLMGLPGAGKGTQGERIVEK   23 (216)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999653

>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C

Probab=96.68  E-value=0.00095  Score=53.71  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.+-
T Consensus        56 i~~IiGpnGaGKSTLlr~i~GL   77 (366)
T 3tui_C           56 IYGVIGASGAGKSTLIRCVNLL   77 (366)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHhcC
Confidence            6899999999999999999985

>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*

Probab=96.68  E-value=0.00088  Score=50.81  Aligned_cols=23  Identities=17%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|+.|||||||++.|.+.
T Consensus        26 ~iigI~G~~GsGKSTl~k~L~~~   48 (245)
T 2jeo_A           26 FLIGVSGGTASGKSTVCEKIMEL   48 (245)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999874

>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A

Probab=96.68  E-value=0.0016  Score=47.71  Aligned_cols=25  Identities=24%  Similarity=0.345  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....|+|.|++|+||||+.+.|...
T Consensus        19 ~~~~I~l~G~~GsGKST~a~~La~~   43 (201)
T 2cdn_A           19 SHMRVLLLGPPGAGKGTQAVKLAEK   43 (201)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3458999999999999999999764

>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}

Probab=96.67  E-value=0.0011  Score=52.38  Aligned_cols=26  Identities=27%  Similarity=0.183  Sum_probs=22.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++-|+|+|++|||||||++.|.+.
T Consensus        90 ~~p~iigI~GpsGSGKSTl~~~L~~l  115 (321)
T 3tqc_A           90 KVPYIIGIAGSVAVGKSTTSRVLKAL  115 (321)
T ss_dssp             CCCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999998764

>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*

Probab=96.67  E-value=0.00086  Score=53.90  Aligned_cols=22  Identities=23%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+|||||++.+++.
T Consensus       125 ~i~I~GptGSGKTTlL~~l~g~  146 (356)
T 3jvv_A          125 LVLVTGPTGSGKSTTLAAMLDY  146 (356)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhc
Confidence            7999999999999999999885

>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}

Probab=96.67  E-value=0.00096  Score=53.55  Aligned_cols=22  Identities=23%  Similarity=0.456  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        43 ~~~llGpnGsGKSTLLr~iaGl   64 (355)
T 1z47_A           43 MVGLLGPSGSGKTTILRLIAGL   64 (355)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999985

>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A

Probab=96.66  E-value=0.0016  Score=46.80  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|++.|++|+||||+.+.|...
T Consensus        11 ~~~i~i~G~~GsGKst~~~~l~~~   34 (180)
T 3iij_A           11 LPNILLTGTPGVGKTTLGKELASK   34 (180)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEeCCCCCHHHHHHHHHHH
Confidence            457999999999999999999854

>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A

Probab=96.66  E-value=0.0009  Score=53.24  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|+|||||++.+.+-
T Consensus       172 ~~v~i~G~~GsGKTTll~~l~g~  194 (330)
T 2pt7_A          172 KNVIVCGGTGSGKTTYIKSIMEF  194 (330)
T ss_dssp             CCEEEEESTTSCHHHHHHHGGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999985

>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A

Probab=96.64  E-value=0.001  Score=53.83  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        31 ~~~llGpsGsGKSTLLr~iaGl   52 (381)
T 3rlf_A           31 FVVFVGPSGCGKSTLLRMIAGL   52 (381)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHcC
Confidence            6899999999999999999995

>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6

Probab=96.64  E-value=0.0012  Score=51.53  Aligned_cols=26  Identities=15%  Similarity=-0.013  Sum_probs=22.4

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .....|+|+|++|+|||||++.|.+.
T Consensus        29 ~~~~ii~I~G~sGsGKSTla~~L~~~   54 (290)
T 1odf_A           29 KCPLFIFFSGPQGSGKSFTSIQIYNH   54 (290)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999998874

>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}

Probab=96.64  E-value=0.0012  Score=47.83  Aligned_cols=23  Identities=26%  Similarity=0.403  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|++.|.+|+||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKST~~~~L~~~   28 (193)
T 2rhm_A            6 ALIIVTGHPATGKTTLSQALATG   28 (193)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999764

>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}

Probab=96.64  E-value=0.001  Score=53.45  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (359)
T 2yyz_A           31 FVALLGPSGCGKTTTLLMLAGI   52 (359)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEEcCCCchHHHHHHHHHCC
Confidence            6899999999999999999985

>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*

Probab=96.64  E-value=0.0016  Score=47.73  Aligned_cols=24  Identities=25%  Similarity=0.403  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        15 ~~~I~l~G~~GsGKsT~~~~L~~~   38 (203)
T 1ukz_A           15 VSVIFVLGGPGAGKGTQCEKLVKD   38 (203)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999854

>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}

Probab=96.63  E-value=0.0011  Score=53.45  Aligned_cols=22  Identities=36%  Similarity=0.508  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (362)
T 2it1_A           31 FMALLGPSGSGKSTLLYTIAGI   52 (362)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCchHHHHHHHHhcC
Confidence            6899999999999999999995

>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}

Probab=96.60  E-value=0.0013  Score=47.33  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 027757           40 PEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ..|+++|++||||||+.+.|..
T Consensus         5 ~~I~l~G~~GsGKST~~~~La~   26 (186)
T 3cm0_A            5 QAVIFLGPPGAGKGTQASRLAQ   26 (186)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3699999999999999999975

>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A

Probab=96.60  E-value=0.0011  Score=53.52  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        31 ~~~llGpnGsGKSTLLr~iaGl   52 (372)
T 1g29_1           31 FMILLGPSGCGKTTTLRMIAGL   52 (372)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCcHHHHHHHHHHcC
Confidence            6899999999999999999995

>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*

Probab=96.59  E-value=0.0012  Score=53.37  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        39 ~~~llGpnGsGKSTLLr~iaGl   60 (372)
T 1v43_A           39 FLVLLGPSGCGKTTTLRMIAGL   60 (372)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            6899999999999999999985

>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2

Probab=96.58  E-value=0.0012  Score=47.12  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|++|+||||+.+.|...
T Consensus         6 ~i~i~G~~GsGKsTla~~La~~   27 (175)
T 1via_A            6 NIVFIGFMGSGKSTLARALAKD   27 (175)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            6999999999999999999864

>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1

Probab=96.57  E-value=0.0013  Score=47.93  Aligned_cols=25  Identities=24%  Similarity=0.191  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....|+|+|++||||||+.+.|...
T Consensus         7 ~~~~I~i~G~~GsGKST~~~~La~~   31 (203)
T 1uf9_A            7 HPIIIGITGNIGSGKSTVAALLRSW   31 (203)
T ss_dssp             CCEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHC
Confidence            3467999999999999999999874

>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*

Probab=96.56  E-value=0.0014  Score=51.02  Aligned_cols=24  Identities=29%  Similarity=0.476  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+++|++||||||++..|...
T Consensus        33 ~~livl~G~sGsGKSTla~~L~~~   56 (287)
T 1gvn_B           33 PTAFLLGGQPGSGKTSLRSAIFEE   56 (287)
T ss_dssp             CEEEEEECCTTSCTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999999864

>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*

Probab=96.56  E-value=0.0018  Score=47.28  Aligned_cols=23  Identities=13%  Similarity=0.205  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++||||||+++.|...
T Consensus         5 ~~I~l~G~~GsGKsT~~~~L~~~   27 (204)
T 2v54_A            5 ALIVFEGLDKSGKTTQCMNIMES   27 (204)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHT
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            57999999999999999999875

>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}

Probab=96.56  E-value=0.0012  Score=51.14  Aligned_cols=22  Identities=23%  Similarity=0.383  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++++|++|+|||||++.+.+.
T Consensus        46 GvlL~Gp~GtGKTtLakala~~   67 (274)
T 2x8a_A           46 GVLLAGPPGCGKTLLAKAVANE   67 (274)
T ss_dssp             EEEEESSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4999999999999999999985

>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*

Probab=96.56  E-value=0.0015  Score=48.38  Aligned_cols=22  Identities=23%  Similarity=0.433  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+++|+|||||+|....|...
T Consensus         2 ~Iil~GpPGsGKgTqa~~La~~   23 (206)
T 3sr0_A            2 ILVFLGPPGAGKGTQAKRLAKE   23 (206)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999875

>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6

Probab=96.55  E-value=0.0012  Score=48.39  Aligned_cols=24  Identities=38%  Similarity=0.461  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|++|+|||||++.|.+.
T Consensus        22 ~~~i~i~G~~GsGKstl~~~l~~~   45 (201)
T 1rz3_A           22 RLVLGIDGLSRSGKTTLANQLSQT   45 (201)
T ss_dssp             SEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999873

>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*

Probab=96.55  E-value=0.0012  Score=52.03  Aligned_cols=24  Identities=29%  Similarity=0.256  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|+.|||||||++.|.+.
T Consensus        80 g~iigI~G~~GsGKSTl~~~L~~~  103 (308)
T 1sq5_A           80 PYIISIAGSVAVGKSTTARVLQAL  103 (308)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999884

>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A

Probab=96.54  E-value=0.0019  Score=46.90  Aligned_cols=24  Identities=21%  Similarity=0.357  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|++|+||||+.+.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~La~~   32 (196)
T 2c95_A            9 TNIIFVVGGPGSGKGTQCEKIVQK   32 (196)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*

Probab=96.53  E-value=0.0019  Score=47.58  Aligned_cols=24  Identities=25%  Similarity=0.286  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|.+||||||+++.|...
T Consensus         9 ~~~I~l~G~~GsGKsT~~~~L~~~   32 (215)
T 1nn5_A            9 GALIVLEGVDRAGKSTQSRKLVEA   32 (215)
T ss_dssp             CCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.53  E-value=0.0069  Score=49.87  Aligned_cols=24  Identities=21%  Similarity=0.249  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..|++.||||+|||+|+.++.+.
T Consensus       215 prGvLLyGPPGTGKTllAkAiA~e  238 (434)
T 4b4t_M          215 PKGALMYGPPGTGKTLLARACAAQ  238 (434)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999985

>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}

Probab=96.53  E-value=0.0016  Score=49.46  Aligned_cols=24  Identities=21%  Similarity=0.331  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+|+|.|++||||||+.+.|...
T Consensus        29 ~~~I~l~G~~GsGKsT~a~~L~~~   52 (243)
T 3tlx_A           29 DGRYIFLGAPGSGKGTQSLNLKKS   52 (243)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999753

>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}

Probab=96.52  E-value=0.011  Score=45.77  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...+++.|++|+|||++++++.+.
T Consensus        54 ~~~vll~Gp~GtGKT~la~~la~~   77 (297)
T 3b9p_A           54 AKGLLLFGPPGNGKTLLARAVATE   77 (297)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            457999999999999999999885

>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}

Probab=96.52  E-value=0.002  Score=49.16  Aligned_cols=22  Identities=36%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~   60 (219)
                      ...|+|+|++||||||+++.|.
T Consensus        27 g~~I~I~G~~GsGKSTl~k~La   48 (252)
T 4e22_A           27 APVITVDGPSGAGKGTLCKALA   48 (252)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHH
Confidence            3589999999999999999999

>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*

Probab=96.51  E-value=0.0013  Score=53.14  Aligned_cols=22  Identities=23%  Similarity=0.394  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+||||+++.+.+.
T Consensus       138 ~i~ivG~~GsGKTTll~~l~~~  159 (372)
T 2ewv_A          138 LILVTGPTGSGKSTTIASMIDY  159 (372)
T ss_dssp             EEEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999999984

>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.51  E-value=0.0085  Score=49.27  Aligned_cols=24  Identities=21%  Similarity=0.392  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..|++.||||+|||+|+.++.+.
T Consensus       206 prGiLL~GPPGtGKT~lakAiA~~  229 (428)
T 4b4t_K          206 PRGVLLYGPPGTGKTMLVKAVANS  229 (428)
T ss_dssp             CCEEEEESCTTTTHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            446999999999999999999985

>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*

Probab=96.51  E-value=0.002  Score=46.50  Aligned_cols=23  Identities=26%  Similarity=0.397  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         7 ~~I~l~G~~GsGKsT~~~~L~~~   29 (194)
T 1qf9_A            7 NVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            47999999999999999999753

>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*

Probab=96.51  E-value=0.019  Score=43.97  Aligned_cols=24  Identities=17%  Similarity=0.291  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...+++.|++|+|||+++.++...
T Consensus        64 ~~~vLl~G~~GtGKT~la~~ia~~   87 (272)
T 1d2n_A           64 LVSVLLEGPPHSGKTALAAKIAEE   87 (272)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999874

>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1

Probab=96.50  E-value=0.0018  Score=48.27  Aligned_cols=23  Identities=22%  Similarity=0.264  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~~~~La~~   28 (222)
T 1zak_A            6 LKVMISGAPASGKGTQCELIKTK   28 (222)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*

Probab=96.50  E-value=0.002  Score=50.68  Aligned_cols=24  Identities=29%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.++++|+.||||||+++.+.+.
T Consensus       102 g~vi~lvG~nGsGKTTll~~Lagl  125 (304)
T 1rj9_A          102 GRVVLVVGVNGVGKTTTIAKLGRY  125 (304)
T ss_dssp             SSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            347999999999999999999864

>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1

Probab=96.50  E-value=0.0016  Score=47.16  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|.+||||||+.+.|...
T Consensus         4 ~~I~l~G~~GsGKsT~a~~L~~~   26 (196)
T 1tev_A            4 LVVFVLGGPGAGKGTQCARIVEK   26 (196)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998753

>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}

Probab=96.49  E-value=0.0014  Score=53.28  Aligned_cols=23  Identities=39%  Similarity=0.722  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|+|||||++.+.|-
T Consensus        48 e~~~llGpsGsGKSTLLr~iaGl   70 (390)
T 3gd7_A           48 QRVGLLGRTGSGKSTLLSAFLRL   70 (390)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHTC
T ss_pred             CEEEEECCCCChHHHHHHHHhCC
Confidence            36899999999999999999985

>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*

Probab=96.49  E-value=0.0017  Score=48.05  Aligned_cols=22  Identities=23%  Similarity=0.416  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|.|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (214)
T 1e4v_A            2 RIILLGAPVAGKGTQAQFIMEK   23 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999763

>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*

Probab=96.48  E-value=0.0014  Score=49.78  Aligned_cols=23  Identities=26%  Similarity=0.452  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|+|++|+|||||++.+.+.
T Consensus        50 ~g~ll~G~~G~GKTtl~~~i~~~   72 (254)
T 1ixz_A           50 KGVLLVGPPGVGKTHLARAVAGE   72 (254)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999985

>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*

Probab=96.47  E-value=0.0019  Score=48.22  Aligned_cols=24  Identities=17%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|++||||||+.+.|...
T Consensus         7 ~~~I~l~G~~GsGKsT~a~~La~~   30 (227)
T 1zd8_A            7 LLRAVIMGAPGSGKGTVSSRITTH   30 (227)
T ss_dssp             CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999753

>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A

Probab=96.47  E-value=0.0015  Score=49.90  Aligned_cols=22  Identities=18%  Similarity=0.315  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|+|++|+|||||...|...
T Consensus         3 li~I~G~~GSGKSTla~~La~~   24 (253)
T 2ze6_A            3 LHLIYGPTCSGKTDMAIQIAQE   24 (253)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHhc
Confidence            4789999999999999999864

>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1

Probab=96.46  E-value=0.0014  Score=55.15  Aligned_cols=22  Identities=23%  Similarity=0.442  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++||||||+++.+++-
T Consensus       262 ~i~I~GptGSGKTTlL~aL~~~  283 (511)
T 2oap_1          262 SAIVVGETASGKTTTLNAIMMF  283 (511)
T ss_dssp             CEEEEESTTSSHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            5999999999999999999984

>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}

Probab=96.46  E-value=0.0018  Score=47.49  Aligned_cols=23  Identities=30%  Similarity=0.157  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++||||||+.+.|...
T Consensus         5 ~~I~i~G~~GsGKsT~~~~L~~~   27 (213)
T 2plr_A            5 VLIAFEGIDGSGKSSQATLLKDW   27 (213)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            47999999999999999999874

>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}

Probab=96.45  E-value=0.002  Score=46.79  Aligned_cols=23  Identities=30%  Similarity=0.408  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++|+||||+.+.|...
T Consensus        13 ~~I~l~G~~GsGKsT~a~~L~~~   35 (199)
T 2bwj_A           13 KIIFIIGGPGSGKGTQCEKLVEK   35 (199)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999764

>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12

Probab=96.45  E-value=0.00099  Score=53.35  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        28 ~~~llGpnGsGKSTLLr~iaGl   49 (348)
T 3d31_A           28 YFVILGPTGAGKTLFLELIAGF   49 (348)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCccHHHHHHHHHcC
Confidence            6899999999999999999995

>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*

Probab=96.45  E-value=0.0023  Score=47.58  Aligned_cols=23  Identities=17%  Similarity=0.370  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+.+.|...
T Consensus         5 ~~I~l~G~~GsGKsT~a~~La~~   27 (220)
T 1aky_A            5 IRMVLIGPPGAGKGTQAPNLQER   27 (220)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999998764

>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*

Probab=96.45  E-value=0.0017  Score=46.74  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.|+|+|.+|+||||+...|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (184)
T 2iyv_A            3 PKAVLVGLPGSGKSTIGRRLAKA   25 (184)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999998764

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=96.44  E-value=0.012  Score=48.25  Aligned_cols=25  Identities=20%  Similarity=0.303  Sum_probs=21.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...-|+++|.+||||||+.++|...
T Consensus       257 ~~~lIil~G~pGSGKSTla~~L~~~  281 (416)
T 3zvl_A          257 NPEVVVAVGFPGAGKSTFIQEHLVS  281 (416)
T ss_dssp             SCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHHh
Confidence            3456889999999999999999875

>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*

Probab=96.44  E-value=0.0018  Score=49.33  Aligned_cols=26  Identities=23%  Similarity=0.302  Sum_probs=21.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .....|+|.|++||||||+.+.|...
T Consensus        20 ~~~~iI~I~G~~GSGKST~a~~L~~~   45 (252)
T 1uj2_A           20 GEPFLIGVSGGTASGKSSVCAKIVQL   45 (252)
T ss_dssp             -CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCcEEEEEECCCCCCHHHHHHHHHHH
Confidence            34568999999999999999998763

>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}

Probab=96.43  E-value=0.052  Score=41.00  Aligned_cols=25  Identities=24%  Similarity=0.310  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....+++.|++|+|||+++.++...
T Consensus        38 ~~~~vll~G~~GtGKT~la~~la~~   62 (262)
T 2qz4_A           38 VPKGALLLGPPGCGKTLLAKAVATE   62 (262)
T ss_dssp             CCCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999874

>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*

Probab=96.42  E-value=0.0015  Score=53.59  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+|||||++.+++.
T Consensus       169 ii~I~GpnGSGKTTlL~allg~  190 (418)
T 1p9r_A          169 IILVTGPTGSGKSTTLYAGLQE  190 (418)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHhh
Confidence            5899999999999999999985

>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}

Probab=96.42  E-value=0.0021  Score=45.44  Aligned_cols=22  Identities=27%  Similarity=0.339  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~L~~~   23 (168)
T 2pt5_A            2 RIYLIGFMCSGKSTVGSLLSRS   23 (168)
T ss_dssp             EEEEESCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999999764

>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.40  E-value=0.0087  Score=48.71  Aligned_cols=24  Identities=21%  Similarity=0.342  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..|++.||||+|||.|+.++.+.
T Consensus       182 prGvLL~GPPGTGKTllAkAiA~e  205 (405)
T 4b4t_J          182 PKGVILYGPPGTGKTLLARAVAHH  205 (405)
T ss_dssp             CCCEEEESCSSSSHHHHHHHHHHH
T ss_pred             CCceEEeCCCCCCHHHHHHHHHHh
Confidence            456999999999999999999985

>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*

Probab=96.40  E-value=0.0024  Score=46.97  Aligned_cols=24  Identities=25%  Similarity=0.188  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|.+|+||||+.+.|...
T Consensus        10 ~~~I~l~G~~GsGKST~~~~L~~~   33 (212)
T 2wwf_A           10 GKFIVFEGLDRSGKSTQSKLLVEY   33 (212)
T ss_dssp             SCEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            457999999999999999999864

>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}

Probab=96.40  E-value=0.0017  Score=50.97  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++++|+.|+||||++..+.+.
T Consensus       101 ~vi~lvG~nGsGKTTll~~Lag~  123 (302)
T 3b9q_A          101 AVIMIVGVNGGGKTTSLGKLAHR  123 (302)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEEcCCCCCHHHHHHHHHHH
Confidence            36889999999999999999874

>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}

Probab=96.39  E-value=0.0026  Score=47.42  Aligned_cols=22  Identities=32%  Similarity=0.469  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+|+|||||+|.+..|...
T Consensus        31 iI~llGpPGsGKgTqa~~L~~~   52 (217)
T 3umf_A           31 VIFVLGGPGSGKGTQCEKLVQK   52 (217)
T ss_dssp             EEEEECCTTCCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3667999999999999999865

>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*

Probab=96.38  E-value=0.0014  Score=49.26  Aligned_cols=23  Identities=22%  Similarity=0.291  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-|+|.|+.||||||+++.|.+.
T Consensus        21 ~~i~i~G~~GsGKSTl~~~L~~~   43 (230)
T 2vp4_A           21 FTVLIEGNIGSGKTTYLNHFEKY   43 (230)
T ss_dssp             EEEEEECSTTSCHHHHHHTTGGG
T ss_pred             eEEEEECCCCCCHHHHHHHHHhc
Confidence            46999999999999999999884

>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*

Probab=96.36  E-value=0.00071  Score=49.94  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|++||||||+++.|...
T Consensus         2 ~I~i~G~~GsGKsTl~~~L~~~   23 (214)
T 1gtv_A            2 LIAIEGVDGAGKRTLVEKLSGA   23 (214)
T ss_dssp             EEEEEEEEEEEHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5899999999999999999864

>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*

Probab=96.34  E-value=0.0023  Score=45.39  Aligned_cols=23  Identities=17%  Similarity=0.326  Sum_probs=20.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|.+|+||||+.+.|...
T Consensus         3 ~~I~l~G~~GsGKsT~a~~La~~   25 (173)
T 1e6c_A            3 EPIFMVGARGCGMTTVGRELARA   25 (173)
T ss_dssp             CCEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36999999999999999998764

>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20

Probab=96.33  E-value=0.0027  Score=45.40  Aligned_cols=24  Identities=21%  Similarity=0.609  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++|.|++|+|||++++.+...
T Consensus        43 ~~~~ll~G~~G~GKT~l~~~~~~~   66 (195)
T 1jbk_A           43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            456999999999999999999875

>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*

Probab=96.33  E-value=0.0021  Score=46.20  Aligned_cols=21  Identities=33%  Similarity=0.407  Sum_probs=19.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      -.+|+|+.|+|||||+.++..
T Consensus        28 ~~~i~G~NGsGKStll~ai~~   48 (182)
T 3kta_A           28 FTAIVGANGSGKSNIGDAILF   48 (182)
T ss_dssp             EEEEEECTTSSHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHH
Confidence            678999999999999999876

>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}

Probab=96.33  E-value=0.002  Score=47.93  Aligned_cols=22  Identities=23%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|++|+|||||+..+++.
T Consensus        25 ~~~i~G~~GsGKTtl~~~l~~~   46 (235)
T 2w0m_A           25 FIALTGEPGTGKTIFSLHFIAK   46 (235)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999999864

>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*

Probab=96.33  E-value=0.00096  Score=53.55  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        33 ~~~llGpnGsGKSTLLr~iaGl   54 (353)
T 1oxx_K           33 RFGILGPSGAGKTTFMRIIAGL   54 (353)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999995

>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}

Probab=96.32  E-value=0.0026  Score=46.00  Aligned_cols=22  Identities=23%  Similarity=0.228  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|.+||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~~~~L~~~   23 (195)
T 2pbr_A            2 LIAFEGIDGSGKTTQAKKLYEY   23 (195)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999873

>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1

Probab=96.32  E-value=0.0014  Score=51.86  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.++|+|+.|||||||++.+.+.
T Consensus         4 i~v~~i~G~~GaGKTTll~~l~~~   27 (318)
T 1nij_A            4 IAVTLLTGFLGAGKTTLLRHILNE   27 (318)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             ccEEEEEecCCCCHHHHHHHHHhh
Confidence            356899999999999999999975

>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}

Probab=96.32  E-value=0.016  Score=45.70  Aligned_cols=24  Identities=25%  Similarity=0.379  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|++.|++|+|||+|+.++...
T Consensus        45 ~~~iLL~GppGtGKT~la~ala~~   68 (322)
T 1xwi_A           45 WRGILLFGPPGTGKSYLAKAVATE   68 (322)
T ss_dssp             CSEEEEESSSSSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCccHHHHHHHHHHH
Confidence            357999999999999999999985

>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}

Probab=96.31  E-value=0.0022  Score=46.28  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+++|.+|+||||+++.|...
T Consensus        13 ~~~i~l~G~~GsGKsT~~~~L~~~   36 (186)
T 2yvu_A           13 GIVVWLTGLPGSGKTTIATRLADL   36 (186)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEEcCCCCCHHHHHHHHHHH
Confidence            356899999999999999999875

>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*

Probab=96.30  E-value=0.002  Score=51.26  Aligned_cols=23  Identities=17%  Similarity=0.419  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++++|++|+|||||++.+.+.
T Consensus        52 ~~~ll~Gp~G~GKTTLa~~ia~~   74 (334)
T 1in4_A           52 DHVLLAGPPGLGKTTLAHIIASE   74 (334)
T ss_dssp             CCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            45899999999999999999985

>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*

Probab=96.29  E-value=0.0027  Score=47.37  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|++||||||+.+.|...
T Consensus         2 ~I~l~G~~GsGKsT~a~~La~~   23 (223)
T 2xb4_A            2 NILIFGPNGSGKGTQGNLVKDK   23 (223)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            6899999999999999998753

>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20

Probab=96.29  E-value=0.0021  Score=49.59  Aligned_cols=22  Identities=27%  Similarity=0.481  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+|||||++.+.+.
T Consensus        75 gvll~Gp~GtGKTtl~~~i~~~   96 (278)
T 1iy2_A           75 GVLLVGPPGVGKTHLARAVAGE   96 (278)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCcChHHHHHHHHHHH
Confidence            4999999999999999999985

>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*

Probab=96.29  E-value=0.0023  Score=45.87  Aligned_cols=23  Identities=26%  Similarity=0.224  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+++|.+|+||||+.+.|.+.
T Consensus         6 ~~i~l~G~~GsGKST~~~~L~~~   28 (179)
T 2pez_A            6 CTVWLTGLSGAGKTTVSMALEEY   28 (179)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999874

>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}

Probab=96.29  E-value=0.0019  Score=53.72  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+++|+|+.|+|||||++.|++-
T Consensus       139 e~v~IvGpnGsGKSTLlr~L~Gl  161 (460)
T 2npi_A          139 PRVVIVGGSQTGKTSLSRTLCSY  161 (460)
T ss_dssp             CCEEEEESTTSSHHHHHHHHHHT
T ss_pred             CEEEEECCCCCCHHHHHHHHhCc
Confidence            57999999999999999999985

>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}

Probab=96.27  E-value=0.0021  Score=46.13  Aligned_cols=24  Identities=29%  Similarity=0.358  Sum_probs=16.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|.+||||||+.+.|...
T Consensus         5 ~~~I~l~G~~GsGKST~a~~La~~   28 (183)
T 2vli_A            5 SPIIWINGPFGVGKTHTAHTLHER   28 (183)
T ss_dssp             CCEEEEECCC----CHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999754

>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*

Probab=96.27  E-value=0.0029  Score=47.70  Aligned_cols=24  Identities=33%  Similarity=0.387  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|++|+||||+.+.|...
T Consensus         9 ~~~i~i~G~~GsGKsTla~~la~~   32 (233)
T 3r20_A            9 SLVVAVDGPAGTGKSSVSRGLARA   32 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999853

>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A

Probab=96.26  E-value=0.0027  Score=47.09  Aligned_cols=23  Identities=35%  Similarity=0.416  Sum_probs=20.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhc
Q 027757           39 RPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ...|+|.|.+||||||+.+.|..
T Consensus         4 ~~~I~i~G~~GSGKST~~~~L~~   26 (218)
T 1vht_A            4 RYIVALTGGIGSGKSTVANAFAD   26 (218)
T ss_dssp             CEEEEEECCTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHH
Confidence            35799999999999999999975

>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}

Probab=96.24  E-value=0.003  Score=46.90  Aligned_cols=23  Identities=13%  Similarity=0.364  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|.+||||||+.+.|...
T Consensus         6 ~~I~l~G~~GsGKsT~a~~La~~   28 (217)
T 3be4_A            6 HNLILIGAPGSGKGTQCEFIKKE   28 (217)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            57999999999999999999753

>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}

Probab=96.22  E-value=0.0018  Score=49.32  Aligned_cols=24  Identities=17%  Similarity=0.261  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+++|++||||||+...|...
T Consensus        32 ~~~i~l~G~~GsGKSTla~~L~~~   55 (253)
T 2p5t_B           32 PIAILLGGQSGAGKTTIHRIKQKE   55 (253)
T ss_dssp             CEEEEEESCGGGTTHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHh
Confidence            457999999999999999999874

>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}

Probab=96.21  E-value=0.0024  Score=48.66  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+||||+.+.|.+.
T Consensus        49 ~~i~l~G~~GsGKSTl~~~La~~   71 (250)
T 3nwj_A           49 RSMYLVGMMGSGKTTVGKIMARS   71 (250)
T ss_dssp             CCEEEECSTTSCHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHh
Confidence            47999999999999999999763

>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*

Probab=96.20  E-value=0.0024  Score=49.74  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=20.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|++|+|||||+..+.+.
T Consensus        37 ~~~i~G~~G~GKTTl~~~ia~~   58 (296)
T 1cr0_A           37 VIMVTSGSGMGKSTFVRQQALQ   58 (296)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            6899999999999999999985

>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*

Probab=96.20  E-value=0.003  Score=47.28  Aligned_cols=41  Identities=15%  Similarity=-0.047  Sum_probs=28.5

Q ss_pred             EEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          124 GVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       124 ~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      .-++++|-.+..+....+.+..+...++|+++++-..|-..
T Consensus        90 ~dvViIDEaQ~l~~~~ve~l~~L~~~gi~Vil~Gl~~df~~  130 (223)
T 2b8t_A           90 TKVIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFKG  130 (223)
T ss_dssp             CCEEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTTS
T ss_pred             CCEEEEecCccCcHHHHHHHHHHHhCCCeEEEEeccccccC
Confidence            34788888775544444556665556899999999888543

>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.016  Score=47.49  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=22.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..|++.||||+|||+|+.++.+.
T Consensus       216 prGvLLyGPPGTGKTlLAkAiA~e  239 (437)
T 4b4t_I          216 PKGVILYGAPGTGKTLLAKAVANQ  239 (437)
T ss_dssp             CSEEEEESSTTTTHHHHHHHHHHH
T ss_pred             CCCCceECCCCchHHHHHHHHHHH
Confidence            457999999999999999999985

>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20

Probab=96.18  E-value=0.0037  Score=47.57  Aligned_cols=24  Identities=21%  Similarity=0.364  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...+++.|++|+|||++++++.+.
T Consensus        45 ~~~vll~G~~GtGKT~la~~la~~   68 (257)
T 1lv7_A           45 PKGVLMVGPPGTGKTLLAKAIAGE   68 (257)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECcCCCCHHHHHHHHHHH
Confidence            456999999999999999999874

>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*

Probab=96.17  E-value=0.0042  Score=46.63  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|.+|+||||+.+.|...
T Consensus        16 ~~~I~l~G~~GsGKsT~a~~La~~   39 (233)
T 1ak2_A           16 GVRAVLLGPPGAGKGTQAPKLAKN   39 (233)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            358999999999999999999764

>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*

Probab=96.17  E-value=0.0028  Score=50.71  Aligned_cols=23  Identities=30%  Similarity=0.511  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+++|+|+.|+|||||++.+.+.
T Consensus        72 q~~gIiG~nGaGKTTLl~~I~g~   94 (347)
T 2obl_A           72 QRIGIFAGSGVGKSTLLGMICNG   94 (347)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            38999999999999999999996

>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}

Probab=96.16  E-value=0.0037  Score=48.49  Aligned_cols=24  Identities=29%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757           38 DRPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ....|+|.|.+||||||+.+.|..
T Consensus        74 ~~~iI~I~G~~GSGKSTva~~La~   97 (281)
T 2f6r_A           74 GLYVLGLTGISGSGKSSVAQRLKN   97 (281)
T ss_dssp             TCEEEEEEECTTSCHHHHHHHHHH
T ss_pred             CCEEEEEECCCCCCHHHHHHHHHH
Confidence            345799999999999999999973

>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*

Probab=96.14  E-value=0.0029  Score=46.71  Aligned_cols=21  Identities=19%  Similarity=0.104  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      .++|+|++|+|||||+..+.+
T Consensus        22 ~~~i~G~~GsGKTtl~~~l~~   42 (220)
T 2cvh_A           22 LTQVYGPYASGKTTLALQTGL   42 (220)
T ss_dssp             EEEEECSTTSSHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHH
Confidence            689999999999999999987

>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=96.12  E-value=0.019  Score=48.46  Aligned_cols=24  Identities=13%  Similarity=0.289  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..-++|.|++|+|||+++.++...
T Consensus        77 ~~~lLL~GppGtGKTtla~~la~~  100 (516)
T 1sxj_A           77 FRAAMLYGPPGIGKTTAAHLVAQE  100 (516)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            357999999999999999999875

>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}

Probab=96.11  E-value=0.0029  Score=50.81  Aligned_cols=23  Identities=22%  Similarity=0.407  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++++|+.|+||||++..+.+.
T Consensus       158 ~vi~lvG~nGsGKTTll~~Lag~  180 (359)
T 2og2_A          158 AVIMIVGVNGGGKTTSLGKLAHR  180 (359)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCChHHHHHHHHHhh
Confidence            36899999999999999999874

>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11

Probab=96.08  E-value=0.0032  Score=47.20  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|++|+|||||+..+++.
T Consensus        26 ~~~i~G~~GsGKTtl~~~l~~~   47 (243)
T 1n0w_A           26 ITEMFGEFRTGKTQICHTLAVT   47 (243)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            6899999999999999999984

>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A

Probab=96.08  E-value=0.0032  Score=54.00  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|-
T Consensus       370 ~~~~ivG~sGsGKSTLl~~l~g~  392 (582)
T 3b60_A          370 KTVALVGRSGSGKSTIASLITRF  392 (582)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCCCHHHHHHHHhhc
Confidence            37999999999999999999985

>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*

Probab=96.05  E-value=0.0031  Score=52.59  Aligned_cols=23  Identities=22%  Similarity=0.315  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.+-
T Consensus        30 e~~~liG~nGsGKSTLl~~l~Gl   52 (483)
T 3euj_A           30 LVTTLSGGNGAGKSTTMAGFVTA   52 (483)
T ss_dssp             SEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCcHHHHHHHHhcC
Confidence            47899999999999999999974

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=96.05  E-value=0.0036  Score=53.12  Aligned_cols=22  Identities=27%  Similarity=0.478  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|.
T Consensus        49 ~~~LvG~NGaGKSTLlk~l~Gl   70 (538)
T 1yqt_A           49 VVGIVGPNGTGKSTAVKILAGQ   70 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            7999999999999999999995

>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A

Probab=96.05  E-value=0.0032  Score=52.61  Aligned_cols=23  Identities=30%  Similarity=0.486  Sum_probs=20.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.|.+.
T Consensus       294 eVI~LVGpNGSGKTTLl~~LAgl  316 (503)
T 2yhs_A          294 FVILMVGVNGVGKTTTIGKLARQ  316 (503)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCcccHHHHHHHHHHH
Confidence            46899999999999999999864

>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*

Probab=96.03  E-value=0.0044  Score=43.82  Aligned_cols=23  Identities=30%  Similarity=0.371  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.|+|.|.+||||||+.+.|...
T Consensus         8 ~~i~l~G~~GsGKSTva~~La~~   30 (168)
T 1zuh_A            8 QHLVLIGFMGSGKSSLAQELGLA   30 (168)
T ss_dssp             CEEEEESCTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998763

>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*

Probab=96.03  E-value=0.0035  Score=46.24  Aligned_cols=23  Identities=30%  Similarity=0.299  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+++|.+|+||||+++.|.+.
T Consensus        26 ~~i~~~G~~GsGKsT~~~~l~~~   48 (211)
T 1m7g_A           26 LTIWLTGLSASGKSTLAVELEHQ   48 (211)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            46899999999999999999874

>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}

Probab=96.02  E-value=0.0034  Score=44.79  Aligned_cols=24  Identities=29%  Similarity=0.556  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++|.|++|+|||+++..+...
T Consensus        43 ~~~vll~G~~G~GKT~la~~~~~~   66 (187)
T 2p65_A           43 KNNPILLGDPGVGKTAIVEGLAIK   66 (187)
T ss_dssp             SCEEEEESCGGGCHHHHHHHHHHH
T ss_pred             CCceEEECCCCCCHHHHHHHHHHH
Confidence            457899999999999999999875

>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}

Probab=96.01  E-value=0.0036  Score=53.64  Aligned_cols=23  Identities=39%  Similarity=0.592  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|-
T Consensus       370 ~~~~ivG~sGsGKSTll~~l~g~  392 (582)
T 3b5x_A          370 KTVALVGRSGSGKSTIANLFTRF  392 (582)
T ss_pred             CEEEEECCCCCCHHHHHHHHhcC
Confidence            37999999999999999999985

>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}

Probab=96.00  E-value=0.0047  Score=45.10  Aligned_cols=23  Identities=26%  Similarity=0.427  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|.|++|+|||+|+.++...
T Consensus        55 ~~~~l~G~~GtGKT~la~~i~~~   77 (202)
T 2w58_A           55 KGLYLHGSFGVGKTYLLAAIANE   77 (202)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            67999999999999999999875

>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A

Probab=96.00  E-value=0.0038  Score=46.91  Aligned_cols=23  Identities=22%  Similarity=0.406  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++||||||+++.|...
T Consensus        27 ~~i~i~G~~GsGKsT~~~~l~~~   49 (229)
T 4eaq_A           27 AFITFEGPEGSGKTTVINEVYHR   49 (229)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEEEcCCCCCHHHHHHHHHHH
Confidence            46999999999999999999885

>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}

Probab=95.97  E-value=0.0039  Score=51.55  Aligned_cols=22  Identities=32%  Similarity=0.543  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +++|+|+.|+|||||++.+.+.
T Consensus       159 ~~~IvG~sGsGKSTLl~~Iag~  180 (438)
T 2dpy_A          159 RMGLFAGSGVGKSVLLGMMARY  180 (438)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            7999999999999999999996

>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A

Probab=95.96  E-value=0.0052  Score=45.80  Aligned_cols=24  Identities=21%  Similarity=0.367  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++|.|++|+|||+|+..+...
T Consensus        52 ~~~~ll~G~~G~GKT~la~~l~~~   75 (242)
T 3bos_A           52 VQAIYLWGPVKSGRTHLIHAACAR   75 (242)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999864

>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*

Probab=95.94  E-value=0.0048  Score=43.03  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      -.+|+|+.|+||||++.++.-
T Consensus        25 ~~~I~G~NGsGKStil~Ai~~   45 (149)
T 1f2t_A           25 INLIIGQNGSGKSSLLDAILV   45 (149)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHH
Confidence            578999999999999999874

>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A

Probab=95.91  E-value=0.004  Score=50.39  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.++|+|++|+|||||++.+.+.
T Consensus       169 ~~~i~l~G~~GsGKSTl~~~l~~~  192 (377)
T 1svm_A          169 KRYWLFKGPIDSGKTTLAAALLEL  192 (377)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHhh
Confidence            347999999999999999999874

>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*

Probab=95.89  E-value=0.0045  Score=49.90  Aligned_cols=20  Identities=35%  Similarity=0.449  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~   60 (219)
                      -.+|+|+.|||||||+++++
T Consensus        25 ~~~i~G~NGaGKTTll~ai~   44 (365)
T 3qf7_A           25 ITVVEGPNGAGKSSLFEAIS   44 (365)
T ss_dssp             EEEEECCTTSSHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            46799999999999999987

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.89  E-value=0.0044  Score=53.36  Aligned_cols=22  Identities=27%  Similarity=0.567  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|.
T Consensus       105 i~~LvGpNGaGKSTLLkiL~Gl  126 (608)
T 3j16_B          105 VLGLVGTNGIGKSTALKILAGK  126 (608)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6999999999999999999985

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.89  E-value=0.0042  Score=52.72  Aligned_cols=22  Identities=27%  Similarity=0.646  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|.
T Consensus        27 i~gLiGpNGaGKSTLlkiL~Gl   48 (538)
T 3ozx_A           27 ILGVLGKNGVGKTTVLKILAGE   48 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            5899999999999999999995

>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.88  E-value=0.0035  Score=53.93  Aligned_cols=23  Identities=30%  Similarity=0.624  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|-
T Consensus       382 ~~~~ivG~sGsGKSTll~~l~g~  404 (598)
T 3qf4_B          382 QKVALVGPTGSGKTTIVNLLMRF  404 (598)
T ss_dssp             CEEEEECCTTSSTTHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcC
Confidence            47999999999999999999985

>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=95.88  E-value=0.025  Score=46.83  Aligned_cols=25  Identities=16%  Similarity=0.276  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+..|++.|++|+|||+|+.++.+.
T Consensus       242 pprGILLyGPPGTGKTlLAkAiA~e  266 (467)
T 4b4t_H          242 PPKGILLYGPPGTGKTLCARAVANR  266 (467)
T ss_dssp             CCSEEEECSCTTSSHHHHHHHHHHH
T ss_pred             CCCceEeeCCCCCcHHHHHHHHHhc
Confidence            3557999999999999999999985

>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}

Probab=95.86  E-value=0.0053  Score=44.80  Aligned_cols=25  Identities=24%  Similarity=0.375  Sum_probs=22.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....|+|.|.+||||||+.+.|...
T Consensus        11 ~~~iIgltG~~GSGKSTva~~L~~~   35 (192)
T 2grj_A           11 HHMVIGVTGKIGTGKSTVCEILKNK   35 (192)
T ss_dssp             CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cceEEEEECCCCCCHHHHHHHHHHh
Confidence            3568999999999999999999864

>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*

Probab=95.85  E-value=0.0057  Score=44.68  Aligned_cols=22  Identities=32%  Similarity=0.311  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|++|+||||+.+.|...
T Consensus         4 ~i~i~G~~GsGKst~~~~la~~   25 (208)
T 3ake_A            4 IVTIDGPSASGKSSVARRVAAA   25 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999763

>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}

Probab=95.84  E-value=0.027  Score=45.08  Aligned_cols=24  Identities=13%  Similarity=0.304  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|++|+|||+|+.++...
T Consensus       117 ~~~vLl~GppGtGKT~la~aia~~  140 (357)
T 3d8b_A          117 PKGILLFGPPGTGKTLIGKCIASQ  140 (357)
T ss_dssp             CSEEEEESSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999874

>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*

Probab=95.82  E-value=0.0054  Score=44.94  Aligned_cols=23  Identities=39%  Similarity=0.429  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+|||||...|...
T Consensus        35 ~~ilI~GpsGsGKStLA~~La~~   57 (205)
T 2qmh_A           35 LGVLITGDSGVGKSETALELVQR   57 (205)
T ss_dssp             EEEEEECCCTTTTHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHh
Confidence            46999999999999999999986

>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A

Probab=95.80  E-value=0.003  Score=54.11  Aligned_cols=23  Identities=43%  Similarity=0.514  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|+.|+|||||++.+.|-
T Consensus       368 ~~~~ivG~sGsGKSTll~~l~g~  390 (578)
T 4a82_A          368 ETVAFVGMSGGGKSTLINLIPRF  390 (578)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            37999999999999999999985

>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A

Probab=95.79  E-value=0.0067  Score=47.29  Aligned_cols=24  Identities=29%  Similarity=0.286  Sum_probs=20.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.-+++.|++|+|||+|+.++...
T Consensus        36 p~~lLl~GppGtGKT~la~aiA~~   59 (293)
T 3t15_A           36 PLILGIWGGKGQGKSFQCELVFRK   59 (293)
T ss_dssp             CSEEEEEECTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            346777899999999999999875

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=95.77  E-value=0.0055  Score=47.70  Aligned_cols=22  Identities=18%  Similarity=0.300  Sum_probs=20.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 027757           40 PEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ..|+++|++|+||||+.+.|..
T Consensus         3 ~~I~l~G~~GsGKST~a~~L~~   24 (301)
T 1ltq_A            3 KIILTIGCPGSGKSTWAREFIA   24 (301)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHH
Confidence            3589999999999999999986

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.76  E-value=0.0054  Score=52.81  Aligned_cols=22  Identities=23%  Similarity=0.468  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|.
T Consensus       119 ~~~LiG~NGsGKSTLlkiL~Gl  140 (607)
T 3bk7_A          119 VVGIVGPNGTGKTTAVKILAGQ  140 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            6999999999999999999995

>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}

Probab=95.76  E-value=0.0038  Score=53.59  Aligned_cols=23  Identities=39%  Similarity=0.599  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|+|||||++.+.+-
T Consensus       370 e~~~ivG~sGsGKSTll~~l~g~  392 (587)
T 3qf4_A          370 SLVAVLGETGSGKSTLMNLIPRL  392 (587)
T ss_dssp             CEEEEECSSSSSHHHHHHTTTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC
Confidence            37999999999999999999985

>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1

Probab=95.76  E-value=0.0075  Score=45.31  Aligned_cols=24  Identities=25%  Similarity=0.412  Sum_probs=21.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757           38 DRPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ....|+|+|++|+||||+.+.|.+
T Consensus        15 ~~~~i~i~G~~gsGKst~~~~l~~   38 (236)
T 1q3t_A           15 KTIQIAIDGPASSGKSTVAKIIAK   38 (236)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHHH
Confidence            345899999999999999999886

>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}

Probab=95.74  E-value=0.022  Score=46.09  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|.|++|+|||+|+.++...
T Consensus       148 ~~~vLL~GppGtGKT~la~aia~~  171 (389)
T 3vfd_A          148 ARGLLLFGPPGNGKTMLAKAVAAE  171 (389)
T ss_dssp             CSEEEEESSTTSCHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHh
Confidence            357999999999999999999764

>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}

Probab=95.72  E-value=0.0057  Score=51.87  Aligned_cols=22  Identities=32%  Similarity=0.576  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus       296 i~~i~G~nGsGKSTLl~~l~Gl  317 (538)
T 3ozx_A          296 IIGILGPNGIGKTTFARILVGE  317 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A

Probab=95.72  E-value=0.0054  Score=47.34  Aligned_cols=23  Identities=26%  Similarity=0.234  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      --++|+|++|+|||||+..+++.
T Consensus        31 ~i~~i~G~~GsGKTtl~~~l~~~   53 (279)
T 1nlf_A           31 TVGALVSPGGAGKSMLALQLAAQ   53 (279)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCCHHHHHHHHHHH
Confidence            36899999999999999999873

>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}

Probab=95.71  E-value=0.0073  Score=46.54  Aligned_cols=24  Identities=21%  Similarity=0.353  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++|.|++|+|||+|+.++...
T Consensus        51 ~~~~ll~G~~GtGKT~la~~la~~   74 (285)
T 3h4m_A           51 PKGILLYGPPGTGKTLLAKAVATE   74 (285)
T ss_dssp             CSEEEEESSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999999875

>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}

Probab=95.67  E-value=0.0065  Score=51.55  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|.
T Consensus       314 ~~~i~G~NGsGKSTLlk~l~Gl  335 (538)
T 1yqt_A          314 VIGIVGPNGIGKTTFVKMLAGV  335 (538)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCC
Confidence            6899999999999999999995

>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*

Probab=95.67  E-value=0.006  Score=45.26  Aligned_cols=23  Identities=26%  Similarity=0.465  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-++|.|++|+|||+++..+...
T Consensus        46 ~~~ll~G~~G~GKT~l~~~~~~~   68 (250)
T 1njg_A           46 HAYLFSGTRGVGKTSIARLLAKG   68 (250)
T ss_dssp             SEEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999864

>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}

Probab=95.67  E-value=0.0079  Score=45.16  Aligned_cols=25  Identities=24%  Similarity=0.393  Sum_probs=21.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...+++|+|++||||||+...|...
T Consensus         7 ~~~~~~~~G~pGsGKsT~a~~L~~~   31 (230)
T 3gmt_A            7 HHMRLILLGAPGAGKGTQANFIKEK   31 (230)
T ss_dssp             --CEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cccceeeECCCCCCHHHHHHHHHHH
Confidence            3579999999999999999998764

>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}

Probab=95.66  E-value=0.0062  Score=44.58  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|.|++|+|||+++..+...
T Consensus        40 ~~ll~G~~G~GKT~l~~~l~~~   61 (226)
T 2chg_A           40 HLLFSGPPGTGKTATAIALARD   61 (226)
T ss_dssp             CEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            4999999999999999999874

>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6

Probab=95.62  E-value=0.0045  Score=48.23  Aligned_cols=24  Identities=21%  Similarity=0.403  Sum_probs=18.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.|+|.|++||||||+.+.|...
T Consensus         5 ~~iIgItG~sGSGKSTva~~L~~~   28 (290)
T 1a7j_A            5 HPIISVTGSSGAGTSTVKHTFDQI   28 (290)
T ss_dssp             SCEEEEESCC---CCTHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999998763

>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20

Probab=95.61  E-value=0.0048  Score=45.49  Aligned_cols=22  Identities=23%  Similarity=0.276  Sum_probs=19.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+++.|++|+|||+++.++...
T Consensus        60 ~ili~GPPGtGKTt~a~ala~~   81 (212)
T 1tue_A           60 CLVFCGPANTGKSYFGMSFIHF   81 (212)
T ss_dssp             EEEEESCGGGCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5999999999999988887763

>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}

Probab=95.59  E-value=0.0076  Score=41.66  Aligned_cols=23  Identities=13%  Similarity=0.089  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++|+|||++..++...
T Consensus        25 ~~vll~G~~GtGKt~lA~~i~~~   47 (145)
T 3n70_A           25 IAVWLYGAPGTGRMTGARYLHQF   47 (145)
T ss_dssp             SCEEEESSTTSSHHHHHHHHHHS
T ss_pred             CCEEEECCCCCCHHHHHHHHHHh
Confidence            45999999999999999999875

>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}

Probab=95.58  E-value=0.0064  Score=47.52  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|++.|++|+|||+|++++.+.
T Consensus        49 ~~~vLL~Gp~GtGKT~la~ala~~   72 (301)
T 3cf0_A           49 SKGVLFYGPPGCGKTLLAKAIANE   72 (301)
T ss_dssp             CSEEEEECSSSSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCcCHHHHHHHHHHH
Confidence            346999999999999999999985

>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*

Probab=95.58  E-value=0.0092  Score=47.74  Aligned_cols=26  Identities=23%  Similarity=0.376  Sum_probs=21.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..+.|+++|++|+||||+...|.+.
T Consensus        22 g~~~~i~l~G~~G~GKTTl~~~la~~   47 (359)
T 2ga8_A           22 NYRVCVILVGSPGSGKSTIAEELCQI   47 (359)
T ss_dssp             CSCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCeeEEEEECCCCCcHHHHHHHHHHH
Confidence            34568999999999999999987764

>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A

Probab=95.56  E-value=0.0077  Score=47.35  Aligned_cols=23  Identities=30%  Similarity=0.437  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +-|+|+|++|+|||||...|...
T Consensus         4 ~~i~i~GptgsGKt~la~~La~~   26 (322)
T 3exa_A            4 KLVAIVGPTAVGKTKTSVMLAKR   26 (322)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             cEEEEECCCcCCHHHHHHHHHHh
Confidence            46889999999999999999875

>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*

Probab=95.56  E-value=0.0077  Score=48.48  Aligned_cols=24  Identities=21%  Similarity=0.407  Sum_probs=20.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~   60 (219)
                      ....||+|+|.+|+|||||+..+-
T Consensus        31 ~~~~killlG~~~SGKST~~kq~~   54 (362)
T 1zcb_A           31 ARLVKILLLGAGESGKSTFLKQMR   54 (362)
T ss_dssp             CCCEEEEEECSTTSSHHHHHHHHH
T ss_pred             cCccEEEEECCCCCcHHHHHHHHH
Confidence            446899999999999999998763

>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*

Probab=95.56  E-value=0.0076  Score=51.89  Aligned_cols=22  Identities=23%  Similarity=0.530  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|.
T Consensus       384 i~~i~G~NGsGKSTLlk~l~Gl  405 (607)
T 3bk7_A          384 VIGIVGPNGIGKTTFVKMLAGV  405 (607)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6899999999999999999995

>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*

Probab=95.55  E-value=0.01  Score=46.24  Aligned_cols=25  Identities=12%  Similarity=0.235  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....++|.|++|+|||+++.++...
T Consensus        66 ~~~~vll~G~~GtGKT~la~~la~~   90 (309)
T 3syl_A           66 PTLHMSFTGNPGTGKTTVALKMAGL   90 (309)
T ss_dssp             CCCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCceEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999988764

>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.54  E-value=0.0071  Score=48.12  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+++.|++|+||||+++.+.+.
T Consensus        38 ~~ll~Gp~G~GKTtl~~~la~~   59 (354)
T 1sxj_E           38 HLLLYGPNGTGKKTRCMALLES   59 (354)
T ss_dssp             CEEEECSTTSSHHHHHHTHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            3999999999999999999884

>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20

Probab=95.50  E-value=0.0083  Score=48.21  Aligned_cols=23  Identities=30%  Similarity=0.531  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.++|.|++|+|||||++.+.+.
T Consensus        45 ~~~li~G~~G~GKTtl~~~l~~~   67 (389)
T 1fnn_A           45 PRATLLGRPGTGKTVTLRKLWEL   67 (389)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999875

>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.47  E-value=0.0093  Score=47.36  Aligned_cols=23  Identities=39%  Similarity=0.619  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.+++.|++|+||||++..+.+.
T Consensus        47 ~~~ll~Gp~G~GKTtla~~la~~   69 (340)
T 1sxj_C           47 PHLLFYGPPGTGKTSTIVALARE   69 (340)
T ss_dssp             CCEEEECSSSSSHHHHHHHHHHH
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            34899999999999999999885

>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*

Probab=95.47  E-value=0.0073  Score=47.58  Aligned_cols=23  Identities=26%  Similarity=0.365  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-++|.|++|+|||+|++++.+.
T Consensus        38 ~~lll~G~~GtGKT~la~~i~~~   60 (324)
T 1l8q_A           38 NPIFIYGSVGTGKTHLLQAAGNE   60 (324)
T ss_dssp             SSEEEECSSSSSHHHHHHHHHHH
T ss_pred             CeEEEECCCCCcHHHHHHHHHHH
Confidence            46999999999999999999874

>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}

Probab=95.47  E-value=0.0082  Score=47.78  Aligned_cols=23  Identities=26%  Similarity=0.362  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+|||||...|...
T Consensus         8 ~lI~I~GptgSGKTtla~~La~~   30 (340)
T 3d3q_A            8 FLIVIVGPTASGKTELSIEVAKK   30 (340)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ceEEEECCCcCcHHHHHHHHHHH
Confidence            46899999999999999998875

>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}

Probab=95.47  E-value=0.0088  Score=47.52  Aligned_cols=23  Identities=26%  Similarity=0.395  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+|||||...|...
T Consensus        41 ~lIvI~GPTgsGKTtLa~~LA~~   63 (339)
T 3a8t_A           41 KLLVLMGATGTGKSRLSIDLAAH   63 (339)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTT
T ss_pred             ceEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999999986

>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A

Probab=95.47  E-value=0.0085  Score=47.34  Aligned_cols=23  Identities=30%  Similarity=0.544  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+|||||...|...
T Consensus         6 ~~i~i~GptGsGKTtla~~La~~   28 (323)
T 3crm_A            6 PAIFLMGPTAAGKTDLAMALADA   28 (323)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHHHH
Confidence            46999999999999999999875

>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}

Probab=95.46  E-value=0.0086  Score=51.54  Aligned_cols=22  Identities=27%  Similarity=0.548  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.+.|-
T Consensus       380 iv~iiG~NGsGKSTLlk~l~Gl  401 (608)
T 3j16_B          380 ILVMMGENGTGKTTLIKLLAGA  401 (608)
T ss_dssp             EEEEESCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            4899999999999999999996

>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}

Probab=95.43  E-value=0.0089  Score=44.84  Aligned_cols=22  Identities=14%  Similarity=0.264  Sum_probs=18.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|++|+|||||+..++..
T Consensus        25 ~~~i~G~~GsGKTtl~~~~~~~   46 (247)
T 2dr3_A           25 VVLLSGGPGTGKTIFSQQFLWN   46 (247)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999998877653

>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}

Probab=95.43  E-value=0.0078  Score=48.19  Aligned_cols=24  Identities=21%  Similarity=0.425  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++|.|++|+|||||++.+.+.
T Consensus        45 ~~~vli~G~~G~GKTtl~~~l~~~   68 (386)
T 2qby_A           45 PNNIFIYGLTGTGKTAVVKFVLSK   68 (386)
T ss_dssp             CCCEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999874

>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12

Probab=95.42  E-value=0.0011  Score=49.85  Aligned_cols=22  Identities=27%  Similarity=0.392  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|+.|+|||||++++.+-
T Consensus        29 ~~~i~GpnGsGKSTll~~i~g~   50 (227)
T 1qhl_A           29 VTTLSGGNGAGKSTTMAAFVTA   50 (227)
T ss_dssp             HHHHHSCCSHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhcc
Confidence            3578999999999999999985

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.40  E-value=0.005  Score=57.76  Aligned_cols=23  Identities=35%  Similarity=0.543  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+|+|+|++|+|||||++.|.+-
T Consensus      1106 e~vaIVG~SGsGKSTL~~lL~rl 1128 (1321)
T 4f4c_A         1106 QTLALVGPSGCGKSTVVALLERF 1128 (1321)
T ss_dssp             CEEEEECSTTSSTTSHHHHHTTS
T ss_pred             CEEEEECCCCChHHHHHHHHhcC
Confidence            38999999999999999999984

>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}

Probab=95.39  E-value=0.065  Score=44.35  Aligned_cols=23  Identities=22%  Similarity=0.450  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|.|++|+|||||++.+...
T Consensus        51 ~~vLL~GppGtGKTtlAr~ia~~   73 (447)
T 3pvs_A           51 HSMILWGPPGTGKTTLAEVIARY   73 (447)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cEEEEECCCCCcHHHHHHHHHHH
Confidence            57999999999999999999875

>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11

Probab=95.38  E-value=0.0082  Score=48.04  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+.|+|++|+|||||+..+++.
T Consensus       133 i~~I~G~~GsGKTTL~~~l~~~  154 (349)
T 1pzn_A          133 ITEVFGEFGSGKTQLAHTLAVM  154 (349)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999985

>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A

Probab=95.35  E-value=0.012  Score=46.23  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|+|||||...|...
T Consensus        11 ~~i~i~GptgsGKt~la~~La~~   33 (316)
T 3foz_A           11 KAIFLMGPTASGKTALAIELRKI   33 (316)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEEECCCccCHHHHHHHHHHh
Confidence            46889999999999999999865

>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*

Probab=95.31  E-value=0.032  Score=49.53  Aligned_cols=25  Identities=16%  Similarity=0.310  Sum_probs=22.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+..|++.|++|+|||+|++++.+.
T Consensus       237 ~p~GILL~GPPGTGKT~LAraiA~e  261 (806)
T 3cf2_A          237 PPRGILLYGPPGTGKTLIARAVANE  261 (806)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHTT
T ss_pred             CCCeEEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999999985

>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}

Probab=95.28  E-value=0.011  Score=42.31  Aligned_cols=23  Identities=39%  Similarity=0.533  Sum_probs=20.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-|++.|++|+||||+.-.|..+
T Consensus        17 ~gvli~G~SGaGKStlal~L~~r   39 (181)
T 3tqf_A           17 MGVLITGEANIGKSELSLALIDR   39 (181)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHHT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHc
Confidence            36899999999999999999886

>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*

Probab=95.24  E-value=0.012  Score=43.27  Aligned_cols=21  Identities=38%  Similarity=0.578  Sum_probs=18.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      -.+|+|+.|+||||++.++.-
T Consensus        25 ~~~I~G~NgsGKStil~ai~~   45 (203)
T 3qks_A           25 INLIIGQNGSGKSSLLDAILV   45 (203)
T ss_dssp             EEEEECCTTSSHHHHHHHHHH
T ss_pred             eEEEEcCCCCCHHHHHHHHHH
Confidence            578899999999999998763

>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}

Probab=95.15  E-value=0.013  Score=43.24  Aligned_cols=23  Identities=22%  Similarity=0.374  Sum_probs=20.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++|+||||+...|...
T Consensus         4 ~~i~i~G~~gsGkst~~~~l~~~   26 (219)
T 2h92_A            4 INIALDGPAAAGKSTIAKRVASE   26 (219)
T ss_dssp             CCEEEECCTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            57999999999999999988763

>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*

Probab=95.13  E-value=0.014  Score=45.30  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...+++.|++|+|||+++.++...
T Consensus        50 ~~~vll~G~~GtGKT~la~~la~~   73 (310)
T 1ofh_A           50 PKNILMIGPTGVGKTEIARRLAKL   73 (310)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            356999999999999999999874

>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20

Probab=95.05  E-value=0.017  Score=45.77  Aligned_cols=23  Identities=35%  Similarity=0.572  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+++.|++|+||||++..+.+.
T Consensus        59 ~~~ll~G~~G~GKT~la~~la~~   81 (353)
T 1sxj_D           59 PHMLFYGPPGTGKTSTILALTKE   81 (353)
T ss_dssp             CCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            34999999999999999999875

>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}

Probab=95.03  E-value=0.0077  Score=51.20  Aligned_cols=23  Identities=35%  Similarity=0.382  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|+|++|||||||.+.|.+.
T Consensus       370 ~iI~LiG~sGSGKSTLar~La~~  392 (552)
T 3cr8_A          370 FTVFFTGLSGAGKSTLARALAAR  392 (552)
T ss_dssp             EEEEEEESSCHHHHHHHHHHHHH
T ss_pred             eEEEEECCCCChHHHHHHHHHHh
Confidence            46899999999999999999985

>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*

Probab=95.02  E-value=0.017  Score=45.00  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+++.|++|+|||+++..+.+.
T Consensus        49 ~~ll~G~~GtGKt~la~~la~~   70 (311)
T 4fcw_A           49 SFLFLGPTGVGKTELAKTLAAT   70 (311)
T ss_dssp             EEEEESCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCCcCHHHHHHHHHHH
Confidence            5999999999999999999875

>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}

Probab=95.02  E-value=0.012  Score=55.27  Aligned_cols=23  Identities=39%  Similarity=0.641  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|+|||||++.+.+-
T Consensus       445 ~~vaivG~sGsGKSTll~ll~~~  467 (1321)
T 4f4c_A          445 QTVALVGSSGCGKSTIISLLLRY  467 (1321)
T ss_dssp             CEEEEEECSSSCHHHHHHHHTTS
T ss_pred             cEEEEEecCCCcHHHHHHHhccc
Confidence            47999999999999999999985

>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C

Probab=95.01  E-value=0.017  Score=45.54  Aligned_cols=24  Identities=25%  Similarity=0.389  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|++.|++|+|||+|+.++...
T Consensus        51 ~~~vLl~GppGtGKT~la~aia~~   74 (322)
T 3eie_A           51 TSGILLYGPPGTGKSYLAKAVATE   74 (322)
T ss_dssp             CCEEEEECSSSSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            457999999999999999999874

>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}

Probab=95.01  E-value=0.02  Score=44.95  Aligned_cols=24  Identities=25%  Similarity=0.484  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...+++.|++|+|||+|+.++...
T Consensus       152 ~~~lll~G~~GtGKT~La~aia~~  175 (308)
T 2qgz_A          152 QKGLYLYGDMGIGKSYLLAAMAHE  175 (308)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999998874

>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A

Probab=95.00  E-value=0.017  Score=41.62  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      ++|+|.+++|||+|...|...
T Consensus         2 ilV~Gg~~SGKS~~A~~la~~   22 (180)
T 1c9k_A            2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCCcHHHHHHHHHhc
Confidence            789999999999999999863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	219
d1svia_	195	c.37.1.8 (A:) Probable GTPase EngB {Bacillus subti	1e-30
d1puia_	188	c.37.1.8 (A:) Probable GTPase EngB {Escherichia co	2e-23
d2cxxa1	184	c.37.1.8 (A:2-185) GTP-binding protein engB {Pyroc	4e-18
d1tq4a_	400	c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (	8e-18
d1xzpa2	160	c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotog	1e-14
d1egaa1	179	c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {	3e-13
d1mkya2	186	c.37.1.8 (A:173-358) Probable GTPase Der, N-termin	3e-13
d1lnza2	185	c.37.1.8 (A:158-342) Obg GTP-binding protein middl	3e-13
d1udxa2	180	c.37.1.8 (A:157-336) Obg GTP-binding protein middl	1e-12
d1mkya1	171	c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal	5e-12
d1wf3a1	178	c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {	1e-11
d1nrjb_	209	c.37.1.8 (B:) Signal recognition particle receptor	2e-10
d2gj8a1	161	c.37.1.8 (A:216-376) Probable tRNA modification GT	4e-09
d2f9la1	175	c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T	9e-09
d1h65a_	257	c.37.1.8 (A:) Chloroplast protein translocon GTPas	8e-08
d1x3sa1	177	c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [Ta	4e-07
d1zd9a1	164	c.37.1.8 (A:18-181) ADP-ribosylation factor {Human	1e-06
d1zj6a1	177	c.37.1.8 (A:2-178) ADP-ribosylation factor {Human	3e-06
d1g7sa4	227	c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-	3e-06
d1z2aa1	164	c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [Ta	3e-06
d1fzqa_	176	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	4e-06
d1g16a_	166	c.37.1.8 (A:) Rab-related protein Sec4 {Baker's ye	6e-06
d1ctqa_	166	c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapi	7e-06
d1upta_	169	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	9e-06
d1kaoa_	167	c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId:	9e-06
d2bmea1	174	c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [Ta	1e-05
d2fu5c1	173	c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [Ta	1e-05
d1r8sa_	160	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	1e-05
d3raba_	169	c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxI	4e-05
d2fh5b1	207	c.37.1.8 (B:63-269) Signal recognition particle re	4e-05
d1ek0a_	170	c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces	5e-05
d2qtvb1	166	c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharom	5e-05
d1u8za_	168	c.37.1.8 (A:) Ras-related protein RalA {Cotton-top	5e-05
d1f6ba_	186	c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus gr	9e-05
d1ky3a_	175	c.37.1.8 (A:) Rab-related protein ypt7p {Baker's y	1e-04
d2erya1	171	c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [	2e-04
d1r2qa_	170	c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId:	2e-04
d1wb1a4	179	c.37.1.8 (A:1-179) Elongation factor SelB, N-termi	2e-04
d1kmqa_	177	c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9	2e-04
d1puja_	273	c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subti	2e-04
d1i2ma_	170	c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 96	2e-04
d1mh1a_	183	c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 96	2e-04
d1z06a1	165	c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus)	2e-04
d1ksha_	165	c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus	3e-04
d2bcgy1	194	c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Sac	4e-04
d2ew1a1	171	c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [Ta	4e-04
d1z0fa1	166	c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [Ta	5e-04
d2g6ba1	170	c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [T	5e-04
d2qn6a3	205	c.37.1.8 (A:2-206) Initiation factor eIF2 gamma su	7e-04
d2f7sa1	186	c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [T	0.001
d2a5ja1	173	c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [Ta	0.001
d2fn4a1	173	c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [T	0.001
d1e0sa_	173	c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo	0.002
d2ngra_	191	c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId:	0.002
d1z0ja1	167	c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [	0.003
d2erxa1	171	c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [	0.003
d1vg8a_	184	c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId	0.004
d1wmsa_	174	c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId:	0.004
d2g3ya1	172	c.37.1.8 (A:73-244) GTP-binding protein GEM {Human	0.004
d2p67a1	327	c.37.1.10 (A:1-327) LAO/AO transport system kinase	0.004
d1wxqa1	319	c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyr	0.004

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} Length = 195

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

 Score =  109 bits (272), Expect = 1e-30
 Identities = 68/200 (34%), Positives = 103/200 (51%), Gaps = 9/200 (4%)

Query: 18  QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQL 77
           ++ + E V S+ + +  P+   PE A+ GRSNVGKSS IN+L+ +K LA TS KPGKTQ 
Sbjct: 2   KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQT 61

Query: 78  INHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK 137
           +N +++N   + VD+PGYGFAK     R  W    + Y   RE L  V+ ++D    P  
Sbjct: 62  LNFYIINDELHFVDVPGYGFAKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSN 121

Query: 138 IDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP--PWIMT 195
            D+    +L    IP+  + TK DK+                +++R+     P    I+ 
Sbjct: 122 DDVQMYEFLKYYGIPVIVIATKADKIP-------KGKWDKHAKVVRQTLNIDPEDELILF 174

Query: 196 SSVTGLGRDELLLHMSQLRN 215
           SS T  G+DE    + ++ N
Sbjct: 175 SSETKKGKDEAWGAIKKMIN 194

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} Length = 188

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

 Score = 91.0 bits (224), Expect = 2e-23
 Identities = 54/189 (28%), Positives = 77/189 (40%), Gaps = 4/189 (2%)

Query: 24  FVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV 83
           FV S+   +  P D   E A  GRSN GKSS +N L  +K LA TSK PG+TQLIN F V
Sbjct: 1   FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEV 60

Query: 84  NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCA 143
                +VDLPGYG+A+ P+  +  W      Y   R+SL G+   +        +     
Sbjct: 61  ADGKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGL---VVLMDIRHPLKDLDQ 117

Query: 144 NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGR 203
             +         V     K            +   ++ +   +         SS+   G 
Sbjct: 118 QMIEWAVDSNIAVLVLLTKADKLASGARKAQLNMVREAV-LAFNGDVQVETFSSLKKQGV 176

Query: 204 DELLLHMSQ 212
           D+L   +  
Sbjct: 177 DKLRQKLDT 185

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 76.7 bits (187), Expect = 4e-18
 Identities = 44/185 (23%), Positives = 71/185 (38%), Gaps = 22/185 (11%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
              GRSNVGKS+LI  L  KK      K+PG T+ I      K+  I+D+PG+GF     
Sbjct: 4   IFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEI-EWKNHKIIDMPGFGFMMGLP 60

Query: 103 VTRMDWSSF--TKGYFLNRESLVGVLLLIDASVPPQ-----------KIDLDCANWLGRN 149
               +            N +++   +L++D    P+            ID++   +L   
Sbjct: 61  KEVQERIKDEIVHFIEDNAKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLREL 120

Query: 150 NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH-HPPWIMTSSVTGLGRDELLL 208
           +IP      K DK+K        E I    +            +I  S+  G   + L  
Sbjct: 121 DIPTIVAVNKLDKIK-----NVQEVINFLAEKFEVPLSEIDKVFIPISAKFGDNIERLKN 175

Query: 209 HMSQL 213
            + ++
Sbjct: 176 RIFEV 180

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} Length = 400

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 78.7 bits (193), Expect = 8e-18
 Identities = 36/151 (23%), Positives = 52/151 (34%), Gaps = 17/151 (11%)

Query: 43  AILGRSNVGKSSLINALV---RKKELALTSKKPGKTQLIN--HFLVNKSWYIVDLPGYGF 97
           A+ G +  GKSS IN L     ++E A  +     T   +        +    DLPG G 
Sbjct: 60  AVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGS 119

Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
              P  T          Y    +       +I ++   +K D+D A  +        FV 
Sbjct: 120 TNFPPDT----------YLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKKEFYFVR 169

Query: 158 TKCDKM--KVAKGRRPDENIKSFQQLIRENY 186
           TK D      A G     + +   Q IR N 
Sbjct: 170 TKVDSDITNEADGEPQTFDKEKVLQDIRLNC 200

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

 Score = 66.5 bits (161), Expect = 1e-14
 Identities = 32/165 (19%), Positives = 60/165 (36%), Gaps = 15/165 (9%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            I+G+ NVGKS+L+N L+ +    +T        +I+  +V +      +   G     +
Sbjct: 4   VIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS--E 61

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
              +      +      E    VL ++DAS P  + D          N     V  K D 
Sbjct: 62  TNDLVERLGIERTLQEIEKADIVLFVLDASSPLDEEDRKILER--IKNKRYLVVINKVDV 119

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
           ++           K  ++ I+         +  S++ G G ++L 
Sbjct: 120 VE-----------KINEEEIKNKLGTDRHMVKISALKGEGLEKLE 153

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

 Score = 63.6 bits (153), Expect = 3e-13
 Identities = 27/172 (15%), Positives = 61/172 (35%), Gaps = 12/172 (6%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-LINHFLVNKSWYIVDLPGYGFAKAP 101
           AI+GR NVGKS+L+N L+ +K +++TS+K   T+  I       ++  + +   G     
Sbjct: 9   AIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE 67

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
                      K    +   +  V+ +++ +      ++            +  V    +
Sbjct: 68  KRAINRL--MNKAASSSIGDVELVIFVVEGTRWTPDDEMVLNKLREGKAPVILAVNKVDN 125

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
                     ++           +  +    +  S+ TGL  D +   + + 
Sbjct: 126 VQ--------EKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIVRKH 169

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 63.5 bits (153), Expect = 3e-13
 Identities = 46/176 (26%), Positives = 75/176 (42%), Gaps = 12/176 (6%)

Query: 37  DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLP 93
            D  + AI+GR NVGKS+L NA++ K+  AL S  PG T+      V    + +  VD  
Sbjct: 6   TDAIKVAIVGRPNVGKSTLFNAILNKE-RALVSPIPGTTRDPVDDEVFIDGRKYVFVDTA 64

Query: 94  GYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPL 153
           G       +   ++  S  +      ++ V V++++DA+    + D   A  + R     
Sbjct: 65  GLRRKSRVEPRTVEKYSNYRVVDSIEKADV-VVIVLDATQGITRQDQRMAGLMERRGRAS 123

Query: 154 TFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP--PWIMTSSVTGLGRDELL 207
             VF K D +        ++    F +L RE        P I TS+  G   D ++
Sbjct: 124 VVVFNKWDLV-----VHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGWNIDRMI 174

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} Length = 185

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

 Score = 63.4 bits (153), Expect = 3e-13
 Identities = 28/178 (15%), Positives = 54/178 (30%), Gaps = 13/178 (7%)

Query: 40  PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN----HFLVNKSWYIVDLPGY 95
            +  ++G  +VGKS+L++ +   K     +     T + N         +S+ + DLPG 
Sbjct: 2   ADVGLVGFPSVGKSTLLSVVSSAK--PKIADYHFTTLVPNLGMVETDDGRSFVMADLPGL 59

Query: 96  GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTF 155
                  V            FL       V++ +      +  D           +    
Sbjct: 60  IEGAHQGVGLGH-------QFLRHIERTRVIVHVIDMSGLEGRDPYDDYLTINQELSEYN 112

Query: 156 VFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
           +        +   +          +  +E      P    S+VT  G  ELL  ++  
Sbjct: 113 LRLTERPQIIVANKMDMPEAAENLEAFKEKLTDDYPVFPISAVTREGLRELLFEVANQ 170

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} Length = 180

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

 Score = 61.6 bits (148), Expect = 1e-12
 Identities = 32/178 (17%), Positives = 60/178 (33%), Gaps = 17/178 (9%)

Query: 40  PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN----HFLVNKSWYIVDLPGY 95
            +  ++G  N GKSSL+ A+ R       +  P  T   N         + + + D+PG 
Sbjct: 2   ADVGLVGYPNAGKSSLLAAMTRAH--PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGI 59

Query: 96  GFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTF 155
               +              +  +      +L ++DA+  P K        +G  +  L  
Sbjct: 60  IEGASEGKGLG------LEFLRHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLR 113

Query: 156 VFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
             +     KV      +E +K+    +          +  S++TG G   L   +  L
Sbjct: 114 RPSLVALNKVDLL--EEEAVKALADALAREGLA---VLPVSALTGAGLPALKEALHAL 166

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

 Score = 59.8 bits (143), Expect = 5e-12
 Identities = 35/166 (21%), Positives = 60/166 (36%), Gaps = 12/166 (7%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             I+GR NVGKS+L N LV+KK+ A+   + G T+      V        L         
Sbjct: 3   VLIVGRPNVGKSTLFNKLVKKKK-AIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDN 61

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
               +          + RE+ + VL ++D      K D   A++L ++ +    V  K +
Sbjct: 62  PQDIISQKMKEVTLNMIREADL-VLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAE 120

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
            ++  +     E                   I  S+   +  D +L
Sbjct: 121 NLREFEREVKPELYSL----------GFGEPIPVSAEHNINLDTML 156

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 178

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 59.0 bits (141), Expect = 1e-11
 Identities = 33/171 (19%), Positives = 60/171 (35%), Gaps = 11/171 (6%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
           AI+G+ NVGKS+L+N L+  K +A  S +P  T+     ++        +          
Sbjct: 9   AIVGKPNVGKSTLLNNLLGVK-VAPISPRPQTTRKRLRGILT--EGRRQIVFVDTPGLHK 65

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
                     +  +     +  V+ ++D   PP   D   A  L         V      
Sbjct: 66  PMDALGEFMDQEVYEALADVNAVVWVVDLRHPPTPEDELVARALKPLVG---KVPILLVG 122

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
            K+   + P+E +K++ +             M S++      EL   +  L
Sbjct: 123 NKLDAAKYPEEAMKAYHE-----LLPEAEPRMLSALDERQVAELKADLLAL 168

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 209

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.2 bits (134), Expect = 2e-10
 Identities = 26/179 (14%), Positives = 53/179 (29%), Gaps = 23/179 (12%)

Query: 39  RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98
           +P   I G  N GK+SL+  L           +P           +     V L  +   
Sbjct: 3   QPSIIIAGPQNSGKTSLLTLLTTDS------VRPTVVSQEPLSAADYDGSGVTLVDFPG- 55

Query: 99  KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWL----------GR 148
                        +       + + G++ ++D++V P+K+    A +L            
Sbjct: 56  -----HVKLRYKLSDYLKTRAKFVKGLIFMVDSTVDPKKLT-TTAEFLVDILSITESSCE 109

Query: 149 NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
           N I +     K +        +  + ++S  Q + E        +          +  L
Sbjct: 110 NGIDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEVERKINEEDYAENTL 168

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} Length = 161

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

 Score = 51.7 bits (122), Expect = 4e-09
 Identities = 31/170 (18%), Positives = 54/170 (31%), Gaps = 15/170 (8%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            I GR N GKSSL+NAL  ++  A+ +   G T+ +     +     + L     A   +
Sbjct: 5   VIAGRPNAGKSSLLNALAGRE-AAIVTDIAGTTRDVLRE--HIHIDGMPLHIIDTAGLRE 61

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
            +        +  +   E    VL ++D +        +              +    +K
Sbjct: 62  ASDEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNK 121

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
             +         +                 I  S+ TG G D L  H+ Q
Sbjct: 122 ADITGETLGMSEVNGH------------ALIRLSARTGEGVDVLRNHLKQ 159

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 9e-09
 Identities = 22/169 (13%), Positives = 47/169 (27%), Gaps = 14/169 (8%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             ++G S VGKS+L++   R +    +    G         V+       +      +  
Sbjct: 7   VVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERY 66

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
                 +     G  L         +    +    +  L        +NI +  V  K D
Sbjct: 67  RRITSAYYRGAVGALLV------YDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHM 210
                             +       ++  +I TS++     +E   ++
Sbjct: 121 LR--------HLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEAFKNI 161

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 257

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score = 49.0 bits (116), Expect = 8e-08
 Identities = 19/191 (9%), Positives = 52/191 (27%), Gaps = 28/191 (14%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            ++G+  VGKSS +N+++  + +   S    +         +++ + +++          
Sbjct: 36  LVMGKGGVGKSSTVNSII-GERVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGG 94

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-----LTFVF 157
                  +  K + L++   V + +    +     +D   A  +  +             
Sbjct: 95  YINDMALNIIKSFLLDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVAL 154

Query: 158 TKCDK----------------------MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195
           T                          ++     + D        ++ EN          
Sbjct: 155 THAQFSPPDGLPYDEFFSKRSEALLQVVRSGASLKKDAQASDIPVVLIENSGRCNKNDSD 214

Query: 196 SSVTGLGRDEL 206
             V   G   +
Sbjct: 215 EKVLPNGIAWI 225

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.4 bits (109), Expect = 4e-07
 Identities = 26/182 (14%), Positives = 54/182 (29%), Gaps = 22/182 (12%)

Query: 36  KDDRPEF--AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWY---IV 90
           +D        I+G S VGKSSL+            +   G    +    V+ +     I 
Sbjct: 2   EDVLTTLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIW 61

Query: 91  DLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNN 150
           D  G          +  + + T  Y+   + ++ V  +       +  +           
Sbjct: 62  DTAG----------QERFRTLTPSYYRGAQGVILVYDVTRRDTFVKLDNWLNELETYCTR 111

Query: 151 IPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHM 210
             +  +       K  +    +E +K  ++       H   +I  S+ T  G       +
Sbjct: 112 NDIVNMLVGNKIDKENREVDRNEGLKFARK-------HSMLFIEASAKTCDGVQCAFEEL 164

Query: 211 SQ 212
            +
Sbjct: 165 VE 166

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 1e-06
 Identities = 19/170 (11%), Positives = 44/170 (25%), Gaps = 14/170 (8%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            ++G    GK++ +N +   +     ++    T   N   + K    + L   G      
Sbjct: 6   TLVGLQYSGKTTFVNVIASGQ----FNEDMIPTVGFNMRKITKGNVTIKLWDIGGQPRFR 61

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
                +           ++        +     +    +  +      IP+  +  K D 
Sbjct: 62  SMWERYCRGVSAIVYMVDAAD-----QEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDL 116

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                 +   E +      I++           S       D  L  + Q
Sbjct: 117 PGALDEKELIEKMN--LSAIQD---REICCYSISCKEKDNIDITLQWLIQ 161

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 3e-06
 Identities = 19/169 (11%), Positives = 42/169 (24%), Gaps = 15/169 (8%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           I+G  N GK++++      + +  +       + I         + +       +     
Sbjct: 20  IVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTY 79

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
                         +RE               ++               L     K D  
Sbjct: 80  YTNTEFVIVVVDSTDRER----------ISVTREELYKMLAHEDLRKAGLLIFANKQDVK 129

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
           +        + +K     I++   H        ++TG G  + L  M  
Sbjct: 130 ECMTVAEISQFLK--LTSIKD---HQWHIQACCALTGEGLCQGLEWMMS 173

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 227

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 44.3 bits (103), Expect = 3e-06
 Identities = 30/212 (14%), Positives = 61/212 (28%), Gaps = 40/212 (18%)

Query: 40  PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAK 99
           P  ++LG  + GK++L++ +        + +  G TQ I    +           +    
Sbjct: 6   PIVSVLGHVDHGKTTLLDHIR--GSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKF 63

Query: 100 APDVTRM--------DWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI 151
           +   T             +FT             +L++D +   +    +  N L     
Sbjct: 64  SIRETLPGLFFIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT 123

Query: 152 PLTFVFTKCDK-----------MKVAKGRRPDENIKSFQQLIRE---------------- 184
           P      K D+                 ++  +  +     + E                
Sbjct: 124 PFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKLHEEGFESERFD 183

Query: 185 ---NYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
              ++      I  S++TG G  ELL  +  L
Sbjct: 184 RVTDFASQVSIIPISAITGEGIPELLTMLMGL 215

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} Length = 164

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.5 bits (101), Expect = 3e-06
 Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 15/171 (8%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             ++G   VGKSS+I    +              +        +    V+          
Sbjct: 5   MVVVGNGAVGKSSMIQRYCKGIF-------TKDYKKTIGVDFLERQIQVNDEDVRLMLWD 57

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
              + ++ + TK Y+   ++ V V    D                   +IP   V  K D
Sbjct: 58  TAGQEEFDAITKAYYRGAQACVLVFSTTDRESFEAISSWREKVVAEVGDIPTALVQNKID 117

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            +        D++    ++           +  TS    L   E+  ++++
Sbjct: 118 LL--------DDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEVFKYLAE 160

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} Length = 176

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

 Score = 43.4 bits (101), Expect = 4e-06
 Identities = 24/175 (13%), Positives = 52/175 (29%), Gaps = 25/175 (14%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            +LG  N GK++L+  L              +           +   V   G+       
Sbjct: 20  LLLGLDNAGKTTLLKQLA------------SEDISHITPTQGFNIKSVQSQGFKLNVWDI 67

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANW-----LGRNNIPLTFVF 157
             +     + + YF N +    ++ +ID++   +  +              + +P+    
Sbjct: 68  GGQRKIRPYWRSYFENTD---ILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFA 124

Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            K D +       P   I     L              S++TG G  + +  + +
Sbjct: 125 NKQDLL----TAAPASEIAEGLNL-HTIRDRVWQIQSCSALTGEGVQDGMNWVCK 174

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.8 bits (100), Expect = 6e-06
 Identities = 26/173 (15%), Positives = 53/173 (30%), Gaps = 21/173 (12%)

Query: 44  ILGRSNVGKSSLINALVRKK---ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA 100
           ++G S VGKS L+   V  K       T     K + ++         I D  G      
Sbjct: 7   LIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAG------ 60

Query: 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160
               +  + + T  Y+      +G++L+ D +      ++         +          
Sbjct: 61  ----QERFRTITTAYYRGA---MGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLV 113

Query: 161 DKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
                 + R          Q          P+I +S+      +E+   +++L
Sbjct: 114 GNKSDMETRVVTA-----DQGEALAKELGIPFIESSAKNDDNVNEIFFTLAKL 161

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 7e-06
 Identities = 22/175 (12%), Positives = 53/175 (30%), Gaps = 17/175 (9%)

Query: 40  PEF--AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGF 97
            E+   ++G   VGKS+L   L++   +         +      +  ++  +  L   G 
Sbjct: 2   TEYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ 61

Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
            +   +      +      +        +    +     +           +++P+  V 
Sbjct: 62  EEYSAMRDQYMRTGEGFLCVFA------INNTKSFEDIHQYREQIKRVKDSDDVPMVLVG 115

Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            KCD                 +Q       +  P+I TS+ T  G ++    + +
Sbjct: 116 NKCDLAA---------RTVESRQAQDLARSYGIPYIETSAKTRQGVEDAFYTLVR 161

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 9e-06
 Identities = 20/170 (11%), Positives = 37/170 (21%), Gaps = 15/170 (8%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            ILG    GK++++  L   +              I     N          +       
Sbjct: 9   LILGLDGAGKTTILYRLQVGE----------VVTTIPTIGFNVETVTYKNLKFQVWDLGG 58

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
           +T +           +    V      D     +   +            L     K D 
Sbjct: 59  LTSIRPYWRCYYSNTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDM 118

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            +                 +            TS+  G G DE +  + +
Sbjct: 119 EQAMTSSEMAN-----SLGLPALKDRKWQIFKTSATKGTGLDEAMEWLVE 163

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 9e-06
 Identities = 29/175 (16%), Positives = 54/175 (30%), Gaps = 18/175 (10%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           +LG   VGKS+L    V    +                + +    +  L   G       
Sbjct: 8   VLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT------ 61

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASV--PPQKIDLDCANWLGRNNIPLTFVFTKCD 161
               ++S    Y  N +  + V  L++       + +            +P+  V  K D
Sbjct: 62  --EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVD 119

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY 216
                +    +      + L  E      P++ TS+ +    DEL   + +  NY
Sbjct: 120 LESEREVSSSEG-----RALAEE---WGCPFMETSAKSKTMVDELFAEIVRQMNY 166

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.2 bits (98), Expect = 1e-05
 Identities = 31/172 (18%), Positives = 59/172 (34%), Gaps = 20/172 (11%)

Query: 44  ILGRSNVGKSSLINALVRKK---ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA 100
           ++G +  GKS L++  + KK   +   T      +++IN         I D  G      
Sbjct: 10  VIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG------ 63

Query: 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160
               +  + S T+ Y+       G LL+ D +       L       R       V   C
Sbjct: 64  ----QERFRSVTRSYYRGAA---GALLVYDITSRETYNALTNWLTDARMLASQNIVIILC 116

Query: 161 DKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
              K     R    +++ +            ++ TS++TG   +E  +  ++
Sbjct: 117 GNKKDLDADREVTFLEASRFAQENEL----MFLETSALTGENVEEAFVQCAR 164

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 42.1 bits (98), Expect = 1e-05
 Identities = 23/178 (12%), Positives = 58/178 (32%), Gaps = 28/178 (15%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWY---IVDLPGYGFA 98
             ++G S VGK+ ++         +      G    I    ++       I D  G    
Sbjct: 9   LLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAG---- 64

Query: 99  KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDA----SVPPQKIDLDCANWLGRNNIPLT 154
              +  R   +++ +G        +G++L+ D     S    +  +         ++   
Sbjct: 65  --QERFRTITTAYYRG-------AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKM 115

Query: 155 FVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            +  KCD          D+   S ++  +    +   ++ TS+   +  +     +++
Sbjct: 116 ILGNKCDVN--------DKRQVSKERGEKLALDYGIKFMETSAKANINVENAFFTLAR 165

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} Length = 160

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

 Score = 41.6 bits (96), Expect = 1e-05
 Identities = 22/169 (13%), Positives = 53/169 (31%), Gaps = 15/169 (8%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           ++G    GK++++  L   +   +T+       +      N S+ + D+ G       D 
Sbjct: 5   MVGLDAAGKTTILYKLKLGE--IVTTIPTIGFNVETVEYKNISFTVWDVGGQ------DK 56

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
            R  W  + +          G++ ++D++   +  +             L          
Sbjct: 57  IRPLWRHYFQNTQ-------GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFAN 109

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
           K       +    + +  +      +     T + +G G  E L  +S 
Sbjct: 110 KQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLSN 158

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.6 bits (94), Expect = 4e-05
 Identities = 25/175 (14%), Positives = 48/175 (27%), Gaps = 20/175 (11%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPG---KTQLINHFLVNKSWYIVDLPGYGFA 98
             I+G S+VGK+S +                G   K + I          I D  G    
Sbjct: 8   ILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG---- 63

Query: 99  KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFT 158
                 +  + + T  Y+       G +L+ D        +   A       I       
Sbjct: 64  ------QERYRTITTAYYRGAM---GFILMYDI----TNEESFNAVQDWSTQIKTYSWDN 110

Query: 159 KCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
               +   K    DE + S ++  +        +   S+   +   +    +  +
Sbjct: 111 AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQTFERLVDV 165

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} Length = 207

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.8 bits (94), Expect = 4e-05
 Identities = 18/150 (12%), Positives = 38/150 (25%), Gaps = 9/150 (6%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
             +G  + GK+ L   L+  +       +   T     + VN +                
Sbjct: 4   LFVGLCDSGKTLLFVRLLTGQ---YRDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHESL 60

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
             ++     +    +               V      +   +   +N+  L     K D 
Sbjct: 61  RFQLLDRFKSSARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDI 120

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPW 192
                  +  + I+  QQL +E        
Sbjct: 121 A----MAKSAKLIQ--QQLEKELNTLRVTR 144

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.0 bits (92), Expect = 5e-05
 Identities = 27/171 (15%), Positives = 58/171 (33%), Gaps = 11/171 (6%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             +LG + VGKSS++   V            G   L     +N+     ++      +  
Sbjct: 6   LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
                 +      Y   + +LV   +    S    +  +   +     +I +  V  K D
Sbjct: 66  ASLAPMY------YRNAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKID 119

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            ++    R+     +  ++L  E       +  TS+ TG   +++ L + +
Sbjct: 120 MLQEGGERKV--AREEGEKLAEE---KGLLFFETSAKTGENVNDVFLGIGE 165

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.1 bits (92), Expect = 5e-05
 Identities = 23/171 (13%), Positives = 40/171 (23%), Gaps = 12/171 (7%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
            LG  N GK++L++ L   +           T       +            G       
Sbjct: 5   FLGLDNAGKTTLLHMLKNDR-----LATLQPTWHPTSEELAIGNIKFTTFDLGGHIQARR 59

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
              D+     G     ++        +     +       N     ++P   +  K D  
Sbjct: 60  LWKDYFPEVNGIVFLVDAAD-----PERFDEARVELDALFNIAELKDVPFVILGNKIDAP 114

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPW--IMTSSVTGLGRDELLLHMSQ 212
                      +        +      P    M S V   G  E    +SQ
Sbjct: 115 NAVSEAELRSALGLLNTTGSQRIEGQRPVEVFMCSVVMRNGYLEAFQWLSQ 165

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} Length = 168

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

 Score = 39.9 bits (92), Expect = 5e-05
 Identities = 23/169 (13%), Positives = 53/169 (31%), Gaps = 14/169 (8%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           ++G   VGKS+L    +  + +         +      L  +   I  L   G      +
Sbjct: 9   MVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYAAI 68

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
            R ++    +G+       V  +  +++                  N+P   V  K D  
Sbjct: 69  -RDNYFRSGEGFL-----CVFSITEMESFAATADFREQILRVKEDENVPFLLVGNKSDLE 122

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
              +    +   ++ Q         +  ++ TS+ T    D++   + +
Sbjct: 123 DKRQVSVEEAKNRADQ--------WNVNYVETSAKTRANVDKVFFDLMR 163

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.7 bits (91), Expect = 9e-05
 Identities = 27/178 (15%), Positives = 54/178 (30%), Gaps = 21/178 (11%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
            LG  N GK++L++ L   +               +   ++ +   + + G  F      
Sbjct: 18  FLGLDNAGKTTLLHMLKDDR------------LGQHVPTLHPTSEELTIAGMTFTTFDLG 65

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID--LDCANWLGRNNIPLTFVFTKCD 161
             +      K Y      +V ++   D     +  +            N+P+  +  K D
Sbjct: 66  GHIQARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKID 125

Query: 162 KMKVAKGRRPDENIKSFQQL-------IRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
           + +     R  E    + Q        ++E         M S +   G  E    M+Q
Sbjct: 126 RPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLKRQGYGEGFRWMAQ 183

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 175

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.3 bits (90), Expect = 1e-04
 Identities = 35/175 (20%), Positives = 55/175 (31%), Gaps = 15/175 (8%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWY----IVDLPGYGF 97
             ILG S VGK+SL++  V  K         G   L     V+        + D  G   
Sbjct: 5   VIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQ-- 62

Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
                      S     Y      ++   +   +S    K   D        N P TF F
Sbjct: 63  -------ERFQSLGVAFYRGADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPF 115

Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                   A+  +   + KS Q+L +       P  +TS+   +  D     +++
Sbjct: 116 VILGNKIDAEESKKIVSEKSAQELAKSL--GDIPLFLTSAKNAINVDTAFEEIAR 168

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 18/177 (10%), Positives = 51/177 (28%), Gaps = 24/177 (13%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             ++G   VGKS+L    ++   +         +      + +++  +  L   G  +  
Sbjct: 8   LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG 67

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASV-----PPQKIDLDCANWLGRNNIPLTFV 156
            +      +             G LL+   +         K          R+  P+  +
Sbjct: 68  AMREQYMRTG-----------EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILI 116

Query: 157 FTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
             K D           +   + ++  +        ++  S+   +  D+    + ++
Sbjct: 117 GNKADLD--------HQRQVTQEEGQQLARQLKVTYMEASAKIRMNVDQAFHELVRV 165

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 20/169 (11%), Positives = 52/169 (30%), Gaps = 14/169 (8%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           +LG S VGKSSL+   V+ +         G   L     ++ +    ++         + 
Sbjct: 11  LLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTA---GQER 67

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
                  + +G           +++ D +               +       V       
Sbjct: 68  YHSLAPMYYRGAQ-------AAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNK 120

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                +R  +  ++       +      ++ TS+ T +  +E+ + +++
Sbjct: 121 ADLANKRAVDFQEAQSYADDNSL----LFMETSAKTSMNVNEIFMAIAK 165

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} Length = 179

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 38.9 bits (89), Expect = 2e-04
 Identities = 30/166 (18%), Positives = 51/166 (30%), Gaps = 7/166 (4%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             I G  + GK++L   L      +   K P          ++  +    L  Y      
Sbjct: 8   LGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQ--KRGITIDIGFSAFKLENYRITLVD 65

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
                D            +  + V+   +         +   +      IP+  V TK D
Sbjct: 66  APGHADLIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFN---IPIIVVITKSD 122

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELL 207
                + +R +  +KS   L   +   +   I  S+ TG G DEL 
Sbjct: 123 NAGTEEIKRTEMIMKSI--LQSTHNLKNSSIIPISAKTGFGVDELK 166

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} Length = 177

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 12/169 (7%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           I+G    GK+ L+    + +   +      +  + +  +  K   +      G      +
Sbjct: 7   IVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGLEDYDRL 66

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
             + +                 L   +        ++         N+P+  V  K D  
Sbjct: 67  RPLSYPDTDVILMCFSIDSPDSL---ENIPEKWTPEVKHFC----PNVPIILVGNKKDLR 119

Query: 164 KVAKGRRPDENIKSFQQLIRE-----NYPHHPPWIMTSSVTGLGRDELL 207
                RR    +K       E     N      ++  S+ T  G  E+ 
Sbjct: 120 NDEHTRRELAKMKQEPVKPEEGRDMANRIGAFGYMECSAKTKDGVREVF 168

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} Length = 273

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

 Score = 39.0 bits (90), Expect = 2e-04
 Identities = 29/92 (31%), Positives = 38/92 (41%), Gaps = 1/92 (1%)

Query: 11  GPYAGHSQIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSK 70
           G        KE+   K         K       I+G  NVGKS+LIN L +K  +A T  
Sbjct: 84  GLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIPNVGKSTLINRLAKKN-IAKTGD 142

Query: 71  KPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
           +PG T       V K   ++D PG  + K  D
Sbjct: 143 RPGITTSQQWVKVGKELELLDTPGILWPKFED 174

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 17/169 (10%), Positives = 50/169 (29%), Gaps = 17/169 (10%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           ++G    GK++ +   +  +          K        V+   +  +     F      
Sbjct: 8   LVGDGGTGKTTFVKRHLTGEF-------EKKYVATLGVEVHPLVFHTNRGPIKFNVWDTA 60

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
            +  +     GY++  +  + +  +          +          NIP+     K D  
Sbjct: 61  GQEKFGGLRDGYYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCENIPIVLCGNKVD-- 118

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                    ++ K   + I  +   +  +   S+ +    ++  L +++
Sbjct: 119 --------IKDRKVKAKSIVFHRKKNLQYYDISAKSNYNFEKPFLWLAR 159

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} Length = 183

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 2e-04
 Identities = 21/168 (12%), Positives = 44/168 (26%), Gaps = 12/168 (7%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           ++G   VGK+ L+ +                     + +V+     + L      +  D 
Sbjct: 10  VVGDGAVGKTCLLISYT-TNAFPGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYDR 68

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
            R      T    +    +         +    ++   C       N P+  V TK D  
Sbjct: 69  LRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHC------PNTPIILVGTKLDLR 122

Query: 164 KVAKGRRPDENIKSFQQLIRENYP-----HHPPWIMTSSVTGLGRDEL 206
                    +  K       +            ++  S++T  G   +
Sbjct: 123 DDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRGLKTV 170

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 29/165 (17%), Positives = 47/165 (28%), Gaps = 16/165 (9%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             ++G SNVGK+ L       +    T    G         ++     + L         
Sbjct: 5   IIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDT------ 58

Query: 102 DVTRMDWSSFTKGYFLNRES--LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTK 159
                   S  + Y+ N  +   V  +  + +         +C   L  N+IP   V  K
Sbjct: 59  AGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNK 118

Query: 160 CDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRD 204
           CD     +           Q+       H  P   TS+      D
Sbjct: 119 CDLRSAIQVPTDL-----AQKFADT---HSMPLFETSAKNPNDND 155

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} Length = 165

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

 Score = 38.1 bits (87), Expect = 3e-04
 Identities = 19/170 (11%), Positives = 47/170 (27%), Gaps = 15/170 (8%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            +LG  N GK++++     +            T   N   +    + +++   G      
Sbjct: 6   LMLGLDNAGKTTILKKFNGED-----VDTISPTLGFNIKTLEHRGFKLNIWDVGG---QK 57

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
             R  W ++ +        +             Q    +  + L    +    +    +K
Sbjct: 58  SLRSYWRNYFESTDGLIWVVD-----SADRQRMQDCQRELQSLLVEERLAGATLLIFANK 112

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
             +      +   ++ +        HH      S+VTG      +  +  
Sbjct: 113 QDLPGALSCNAIQEALEL--DSIRSHHWRIQGCSAVTGEDLLPGIDWLLD 160

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 194

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.9 bits (87), Expect = 4e-04
 Identities = 25/175 (14%), Positives = 55/175 (31%), Gaps = 22/175 (12%)

Query: 42  FAILGRSNVGKSSLINALVRKK---ELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFA 98
             ++G S VGKS L+          +   T     K + +          I D  G    
Sbjct: 9   LLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAG---- 64

Query: 99  KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFT 158
                 +  + + T  Y+       G++++ D +                      +  +
Sbjct: 65  ------QERFRTITSSYYRGSH---GIIIVYDVTDQE-----SFNGVKMWLQEIDRYATS 110

Query: 159 KCDKMKVA-KGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
              K+ V  K    D+ +  +         +  P++ TS++     ++  L M++
Sbjct: 111 TVLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDAFLTMAR 165

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 4e-04
 Identities = 27/175 (15%), Positives = 54/175 (30%), Gaps = 22/175 (12%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWY---IVDLPGYGFA 98
             ++G + VGK+ L+    +           G   +I    +N       I D  G    
Sbjct: 8   IVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG---- 63

Query: 99  KAPDVTRMDWSSFTKGYFLNRESLVGVLLLID-ASVPPQKIDLDCANWLGRNNIPLTFVF 157
                 +  + S T+ Y+ +  +L+    +    S       L        N +    V 
Sbjct: 64  ------QERFRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVG 117

Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            K D          +    S Q+    +      ++ TS+      ++L L ++ 
Sbjct: 118 NKIDLA--------ERREVSQQRAEEFSEAQDMYYLETSAKESDNVEKLFLDLAC 164

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} Length = 166

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 23/171 (13%), Positives = 53/171 (30%), Gaps = 14/171 (8%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
           + I+G   VGKS L++    KK +A      G         V+     + +      +  
Sbjct: 7   YIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERF 66

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
                 +     G  +         +   ++       L  A  L   N  +  +  K D
Sbjct: 67  RAVTRSYYRGAAGALMV------YDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKAD 120

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                      +   ++++  +    +   ++  S+ TG   ++  L  ++
Sbjct: 121 --------LEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDAFLEAAK 163

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} Length = 170

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 5e-04
 Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 21/175 (12%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSW----YIVDLPGYGF 97
             ++G S VGK+ L+        LA T          N  L          + D  G   
Sbjct: 9   VMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAG--- 65

Query: 98  AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF 157
               +  R    ++ +           +LLL D +      ++                 
Sbjct: 66  ---QERFRSVTHAYYRDAH-------ALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVAL 115

Query: 158 TKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                   +      E +   +   +    +  P++ TS+ TGL  D     +++
Sbjct: 116 MLLGNKVDS----AHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLAFTAIAK 166

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} Length = 205

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

 Score = 37.2 bits (85), Expect = 7e-04
 Identities = 27/192 (14%), Positives = 60/192 (31%), Gaps = 20/192 (10%)

Query: 36  KDDRPE--FAILGRSNVGKSSLINALVRK-KELALTSKKPGKTQLINHFLVNKSWYIVDL 92
              +PE    ++G  + GK++L+ A+            K G T  + +   N        
Sbjct: 3   PKVQPEVNIGVVGHVDHGKTTLVQAITGIWTSKHSEELKRGMTIKLGYAETNIGVCESCK 62

Query: 93  PGYGFAKAPDVTRMDWSSFTKG-----------------YFLNRESLVGVLLLIDASVPP 135
               +   P           K                    L+  +L+   +L+ A+  P
Sbjct: 63  KPEAYVTEPSCKSCGSDDEPKFLRRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEP 122

Query: 136 QKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMT 195
                   +++    I +  +    +K+ V          +  +Q  +  +  + P I  
Sbjct: 123 FPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKEEALSQYRQIKQFTKGTWAENVPIIPV 182

Query: 196 SSVTGLGRDELL 207
           S++  +  D L+
Sbjct: 183 SALHKINIDSLI 194

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} Length = 186

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 26/173 (15%), Positives = 55/173 (31%), Gaps = 9/173 (5%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPD 102
            LG S VGK++ +      K         G        +   +         +       
Sbjct: 10  ALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLW 69

Query: 103 VT--RMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160
            T  +  + S T  +F +     G LL+ D +     +++       + N          
Sbjct: 70  DTAGQERFRSLTTAFFRDAM---GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIVL 126

Query: 161 DKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
              K     + + N +  ++L  +   +  P+  TS+ TG   ++ +  +  L
Sbjct: 127 IGNKADLPDQREVNERQARELADK---YGIPYFETSAATGQNVEKAVETLLDL 176

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (83), Expect = 0.001
 Identities = 24/170 (14%), Positives = 55/170 (32%), Gaps = 16/170 (9%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           I+G + VGKS L+     K+   +     G         ++     + +           
Sbjct: 8   IIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTA------- 60

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-LDCANWLGRNNIPLTFVFTKCDK 162
            +  + S T+ Y+      + V  +            L+ A     +N+ +  +  K D 
Sbjct: 61  GQESFRSITRSYYRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDL 120

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                 +R        ++       H   ++ TS+ T    +E  ++ ++
Sbjct: 121 ESRRDVKR--------EEGEAFAREHGLIFMETSAKTACNVEEAFINTAK 162

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 0.001
 Identities = 23/179 (12%), Positives = 50/179 (27%), Gaps = 15/179 (8%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             ++G   VGKS+L    ++   ++        +      +      +  L   G  +  
Sbjct: 9   LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 68

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
            +      +      +        +    +     K+         R++ P+  V  K D
Sbjct: 69  AMREQYMRAGHGFLLVFA------INDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKAD 122

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHM-SQLRNYWDQ 219
                      +      +       HH  +   S+   L  DE    +   +R Y +Q
Sbjct: 123 --------LESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDEAFEQLVRAVRKYQEQ 173

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} Length = 173

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.002
 Identities = 21/169 (12%), Positives = 52/169 (30%), Gaps = 15/169 (8%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           +LG    GK++++  L   +   +T+       +      N  + + D+ G       D 
Sbjct: 17  MLGLDAAGKTTILYKLKLGQS--VTTIPTVGFNVETVTYKNVKFNVWDVGGQ------DK 68

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
            R  W  +  G         G++ ++D +   +  +         N+  +          
Sbjct: 69  IRPLWRHYYTGTQ-------GLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFAN 121

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
           K         +    +  +      +     + + +G G  E L  ++ 
Sbjct: 122 KQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLYEGLTWLTS 170

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} Length = 191

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 17/171 (9%), Positives = 44/171 (25%), Gaps = 18/171 (10%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGY---GFAKA 100
           ++G   VGK+ L+ +    K  +           +   +  + + +          + + 
Sbjct: 8   VVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYDRL 67

Query: 101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC 160
             ++      F   + +   S          +V  + +     +       P   V T+ 
Sbjct: 68  RPLSYPQTDVFLVCFSVVSPSSF-------ENVKEKWVPEITHHC---PKTPFLLVGTQI 117

Query: 161 DKMKVAKGRRPDENIKSFQQLIRE-----NYPHHPPWIMTSSVTGLGRDEL 206
           D              K                    ++  S++T  G   +
Sbjct: 118 DLRDDPSTIEKLAKNKQKPITPETAEKLARDLKAVKYVECSALTQKGLKNV 168

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} Length = 167

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 17/169 (10%), Positives = 46/169 (27%), Gaps = 14/169 (8%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           +LG + VGKSS++   V        +   G + +          +   +           
Sbjct: 9   LLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTA------- 61

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM 163
               + +    Y+    + + V  +          +             +  +      +
Sbjct: 62  GLERFRALAPMYYRGSAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDL 121

Query: 164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
              +     +               H  ++ TS+   +  +EL + +S+
Sbjct: 122 TDVREVMERDAKDYADS-------IHAIFVETSAKNAININELFIEISR 163

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 29/171 (16%), Positives = 49/171 (28%), Gaps = 13/171 (7%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
           A+ G   VGKSSL+   V+             T             +      G  + P 
Sbjct: 6   AVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPA 65

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
           + R+   S    + L                     +  C       +IP+  V  KCD+
Sbjct: 66  MQRLSI-SKGHAFILVYSITSR----QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDE 120

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL 213
               + +  +      + L R        ++ TS+       EL   +  L
Sbjct: 121 SPSREVQSSE-----AEALART---WKCAFMETSAKLNHNVKELFQELLNL 163

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 184

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 25/172 (14%), Positives = 52/172 (30%), Gaps = 12/172 (6%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             ILG S VGK+SL+N  V KK         G   L    +V+     + +      +  
Sbjct: 5   VIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERF 64

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
               + +                 +L+ D + P     LD                    
Sbjct: 65  QSLGVAFYRGAD----------CCVLVFDVTAPNTFKTLDSWRDEFLIQAS-PRDPENFP 113

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHH-PPWIMTSSVTGLGRDELLLHMSQ 212
            + +      +    + ++     Y  +  P+  TS+   +  ++    +++
Sbjct: 114 FVVLGNKIDLENRQVATKRAQAWCYSKNNIPYFETSAKEAINVEQAFQTIAR 165

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} Length = 174

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.004
 Identities = 27/170 (15%), Positives = 48/170 (28%), Gaps = 12/170 (7%)

Query: 44  ILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV 103
           +LG   VGKSSL+N  V  K         G   L     V+  +  + +           
Sbjct: 11  LLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTA------- 63

Query: 104 TRMDWSSFTKGYFLNRESLVGVLLLID-ASVPPQKIDLDCANWLGRNNIPLTFVFTKCDK 162
            +  + S    ++   +  +    + D  S            +      P +F F     
Sbjct: 64  GQERFRSLRTPFYRGSDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGN 123

Query: 163 MKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
                 R+     +  Q   R+N     P+  TS+              +
Sbjct: 124 KIDISERQVST--EEAQAWCRDN--GDYPYFETSAKDATNVAAAFEEAVR 169

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} Length = 172

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (78), Expect = 0.004
 Identities = 19/171 (11%), Positives = 46/171 (26%), Gaps = 11/171 (6%)

Query: 42  FAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAP 101
             ++G   VGKS+L N      +   +  +          L+        +    +    
Sbjct: 6   VVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWENKG 65

Query: 102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD 161
           +   +       G        +       +     ++ +         +IP+  V  K D
Sbjct: 66  ENEWLHDHCMQVGDAYLIVYSITD---RASFEKASELRIQLRRARQTEDIPIILVGNKSD 122

Query: 162 KMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQ 212
            ++  +    +    +              +I TS+       EL   + +
Sbjct: 123 LVRCREVSVSEGRACAVV--------FDCKFIETSAAVQHNVKELFEGIVR 165

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} Length = 327

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (80), Expect = 0.004
 Identities = 27/218 (12%), Positives = 51/218 (23%), Gaps = 54/218 (24%)

Query: 43  AILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPD 102
            + G    GKS+ + A      L     K     +        +   +           D
Sbjct: 58  GVTGTPGAGKSTFLEAFGM--LLIREGLKVAV--IAVDPSSPVTGGSI---------LGD 104

Query: 103 VTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANW----------------- 145
            TRM+  +  +  F+      G L           +  + A +                 
Sbjct: 105 KTRMNDLARAEAAFIRPVPSSGHLGGASQRARELMLLCEAAGYDVVIVETVGVGQSETEV 164

Query: 146 --------------LGRN---------NIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLI 182
                          G +          +    V  K D              +S   ++
Sbjct: 165 ARMVDCFISLQIAGGGDDLQGIKKGLMEVADLIVINKDDGDNHTNVAIARHMYESALHIL 224

Query: 183 RENYP-HHPPWIMTSSVTGLGRDELLLHMSQLRNYWDQ 219
           R  Y    P  +  S++   G DE+   +   +     
Sbjct: 225 RRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTALTA 262

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} Length = 319

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 34.9 bits (79), Expect = 0.004
 Identities = 7/21 (33%), Positives = 12/21 (57%)

Query: 43 AILGRSNVGKSSLINALVRKK 63
           ++G+ NVGKS+  +A     
Sbjct: 4  GVVGKPNVGKSTFFSAATLVD 24

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	219
d1svia_	195	Probable GTPase EngB {Bacillus subtilis [TaxId: 14	99.97
d3raba_	169	Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}	99.94
d2fn4a1	173	r-Ras {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2gjsa1	168	Rad {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1z2aa1	164	Rab23 {Mouse (Mus musculus) [TaxId: 10090]}	99.94
d1u8za_	168	Ras-related protein RalA {Cotton-top tamarin (Sagu	99.94
d2ew1a1	171	Rab30 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erxa1	171	di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d2erya1	171	r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}	99.94
d1wf3a1	178	GTPase Era, N-terminal domain {Thermus thermophilu	99.93
d2atva1	168	Ras-like estrogen-regulated growth inhibitor, RERG	99.93
d1yzqa1	164	Rab6 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z0fa1	166	Rab14 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1ky3a_	175	Rab-related protein ypt7p {Baker's yeast (Saccharo	99.93
d1z0ja1	167	Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}	99.93
d1ctqa_	166	cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9	99.93
d1kaoa_	167	Rap2a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2f7sa1	186	Rab27b {Human (Homo sapiens) [TaxId: 9606]}	99.93
d2bmea1	174	Rab4a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1z08a1	167	Rab21 {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1xtqa1	167	GTP-binding protein RheB {Human (Homo sapiens) [Ta	99.93
d1r2qa_	170	Rab5a {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1c1ya_	167	Rap1A {Human (Homo sapiens) [TaxId: 9606]}	99.93
d1mkya2	186	Probable GTPase Der, N-terminal and middle domains	99.93
d1x1ra1	169	Ras-related protein M-Ras (XRas) {Mouse (Mus muscu	99.93
d2atxa1	185	RhoQ {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2cxxa1	184	GTP-binding protein engB {Pyrococcus horikoshii [T	99.92
d2a5ja1	173	Rab2b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1kmqa_	177	RhoA {Human (Homo sapiens) [TaxId: 9606]}	99.92
d2g3ya1	172	GTP-binding protein GEM {Human (Homo sapiens) [Tax	99.92
d2bcgy1	194	GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi	99.92
d1g16a_	166	Rab-related protein Sec4 {Baker's yeast (Saccharom	99.92
d2f9la1	175	Rab11b {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1i2ma_	170	Ran {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1mkya1	171	Probable GTPase Der, N-terminal and middle domains	99.92
d1fzqa_	176	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.92
d1z06a1	165	Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}	99.92
d2g6ba1	170	Rab26 {Human (Homo sapiens) [TaxId: 9606]}	99.92
d1wmsa_	174	Rab9a {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1xzpa2	160	TrmE GTPase domain {Thermotoga maritima [TaxId: 23	99.91
d1ek0a_	170	Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T	99.91
d2fu5c1	173	Rab8a {Mouse (Mus musculus) [TaxId: 10090]}	99.91
d1x3sa1	177	Rab18 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d2ngra_	191	CDC42 {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1ksha_	165	ADP-ribosylation factor {Mouse (Mus musculus), ARL	99.91
d1moza_	182	ADP-ribosylation factor {Baker's yeast (Saccharomy	99.91
d1mh1a_	183	Rac {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1zd9a1	164	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.9
d2gj8a1	161	Probable tRNA modification GTPase TrmE (MnmE), G d	99.9
d1vg8a_	184	Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}	99.9
d1udxa2	180	Obg GTP-binding protein middle domain {Thermus the	99.9
d1e0sa_	173	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.9
d1wb1a4	179	Elongation factor SelB, N-terminal domain {Methano	99.9
d1m7ba_	179	RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}	99.89
d1puia_	188	Probable GTPase EngB {Escherichia coli [TaxId: 562	99.89
d2bmja1	175	Centaurin gamma 1, G domain {Human (Homo sapiens)	99.89
d1g7sa4	227	Initiation factor IF2/eIF5b, N-terminal (G) domain	99.89
d1lnza2	185	Obg GTP-binding protein middle domain {Bacillus su	99.88
d2qn6a3	205	Initiation factor eIF2 gamma subunit, N-terminal (	99.87
d1r8sa_	160	ADP-ribosylation factor {Human (Homo sapiens), ARF	99.87
d1kk1a3	195	Initiation factor eIF2 gamma subunit, N-terminal (	99.86
d1zj6a1	177	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.85
d1d2ea3	196	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.84
d1upta_	169	ADP-ribosylation factor {Human (Homo sapiens), ARL	99.82
d2qtvb1	166	SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta	99.82
d1egaa1	179	GTPase Era, N-terminal domain {Escherichia coli [T	99.8
d2c78a3	204	Elongation factor Tu (EF-Tu), N-terminal (G) domai	99.79
d1f6ba_	186	SAR1 {Chinese hamster (Cricetulus griseus) [TaxId:	99.79
d1zunb3	222	Sulfate adenylate transferase subunit cysN/C, EF-T	99.78
d2fh5b1	207	Signal recognition particle receptor beta-subunit	99.77
d1tq4a_	400	Interferon-inducible GTPase {Mouse (Mus musculus)	99.76
d2bv3a2	276	Elongation factor G (EF-G), N-terminal (G) domain	99.74
d1svsa1	195	Transducin (alpha subunit) {Rat (Rattus norvegicus	99.73
d2dy1a2	267	Elongation factor G (EF-G), N-terminal (G) domain	99.72
d1nrjb_	209	Signal recognition particle receptor beta-subunit	99.71
d2bcjq2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.7
d1zcba2	200	Transducin (alpha subunit) {Mouse (Mus musculus) [	99.7
d1f60a3	239	Elongation factor eEF-1alpha, N-terminal (G) domai	99.66
d1r5ba3	245	Eukaryotic peptide chain release factor ERF2, G do	99.65
d1jnya3	224	Elongation factor eEF-1alpha, N-terminal (G) domai	99.65
d2p67a1	327	LAO/AO transport system kinase ArgK {Escherichia c	99.61
d1h65a_	257	Chloroplast protein translocon GTPase Toc34 {Garde	99.6
d1yrba1	244	ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss	99.58
d1n0ua2	341	Elongation factor 2 (eEF-2), N-terminal (G) domain	99.58
d2qm8a1	323	Metallochaperone MeaB {Methylobacterium extorquens	99.52
d1azta2	221	Transducin (alpha subunit) {Cow (Bos taurus) [TaxI	99.48
d2akab1	299	Dynamin G domain {Rat (Rattus norvegicus) [TaxId:	99.36
d1ni3a1	296	YchF GTP-binding protein N-terminal domain {Fissio	99.35
d1jwyb_	306	Dynamin G domain {Dictyostelium discoideum [TaxId:	99.32
d1wxqa1	319	GTP-binding protein PH0525 {Pyrococcus horikoshii	99.2
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	99.17
d1jala1	278	YchF GTP-binding protein N-terminal domain {Haemop	99.06
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.86
d1puja_	273	Probable GTPase YlqF {Bacillus subtilis [TaxId: 14	98.8
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.67
d1nija1	222	Hypothetical protein YjiA, N-terminal domain {Esch	98.61
d1j8yf2	211	GTPase domain of the signal sequence recognition p	98.59
d1u0la2	225	Probable GTPase EngC (YjeQ), C-terminal domain {Th	98.53
d1vmaa2	213	GTPase domain of the signal recognition particle r	98.45
d2qy9a2	211	GTPase domain of the signal recognition particle r	98.27
d1t9ha2	231	Probable GTPase EngC (YjeQ), C-terminal domain {Ba	98.23
d1okkd2	207	GTPase domain of the signal recognition particle r	98.18
d1ls1a2	207	GTPase domain of the signal sequence recognition p	98.12
d1bifa1	213	6-phosphofructo-2-kinase/fructose-2,6-bisphosphata	97.97
d1f5na2	277	Interferon-induced guanylate-binding protein 1 (GB	97.84
d1ye8a1	178	Hypothetical kinase-like protein Aq_1292 {Aquifex	97.74
d1rkba_	173	Adenylate kinase {Human (Homo sapiens), isoenzyme	97.71
d1np6a_	170	Molybdopterin-guanine dinucleotide biosynthesis pr	97.67
d1lw7a2	192	Transcriptional regulator NadR, ribosylnicotinamid	97.62
d1y63a_	174	Probable kinase LmjF30.1890 {Leishmania major [Tax	97.57
d1yj5a2	172	5' polynucleotide kinase-3' phosphatase, C-termina	97.51
d1zaka1	189	Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}	97.5
d1qf9a_	194	UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4	97.47
d1kgda_	178	Guanylate kinase-like domain of Cask {Human (Homo	97.44
d1znwa1	182	Guanylate kinase {Mycobacterium tuberculosis [TaxI	97.42
d1ly1a_	152	Polynucleotide kinase, kinase domain {Bacteriophag	97.39
d2iyva1	165	Shikimate kinase (AroK) {Mycobacterium tuberculosi	97.38
d1r6bx2	268	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	97.35
d1ak2a1	190	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.32
d2ak3a1	189	Adenylate kinase {Cow (Bos taurus), mitochondrial	97.3
d1zina1	182	Adenylate kinase {Bacillus stearothermophilus [Tax	97.3
d2bdta1	176	Hypothetical protein BH3686 {Bacillus halodurans [	97.27
d2pmka1	241	Haemolysin B ATP-binding protein {Escherichia coli	97.27
d1xjca_	165	Molybdopterin-guanine dinucleotide biosynthesis pr	97.27
d1rz3a_	198	Hypothetical protein rbstp0775 {Bacillus stearothe	97.25
d1gkya_	186	Guanylate kinase {Baker's yeast (Saccharomyces cer	97.24
d1teva_	194	UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]	97.23
d1jbka_	195	ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}	97.22
d1ukza_	196	Uridylate kinase {Baker's yeast (Saccharomyces cer	97.21
d2cdna1	181	Adenylate kinase {Mycobacterium tuberculosis [TaxI	97.2
d1d2na_	246	Hexamerization domain of N-ethylmalemide-sensitive	97.2
d1s3ga1	182	Adenylate kinase {Bacillus globisporus [TaxId: 145	97.19
d1mv5a_	242	Multidrug resistance ABC transporter LmrA, C-termi	97.19
d3b60a1	253	Multidrug resistance ABC transporter MsbA, C-termi	97.18
d1e4va1	179	Adenylate kinase {Escherichia coli [TaxId: 562]}	97.16
d2awna2	232	Maltose transport protein MalK, N-terminal domain	97.15
d1kaga_	169	Shikimate kinase (AroK) {Escherichia coli [TaxId:	97.15
d1jj7a_	251	Peptide transporter Tap1, C-terminal ABC domain {H	97.12
d1l2ta_	230	MJ0796 {Archaeon Methanococcus jannaschii [TaxId:	97.12
d1sgwa_	200	Putative ABC transporter PF0895 {Pyrococcus furios	97.11
d2i3ba1	189	Cancer-related NTPase, C1orf57 {Human (Homo sapien	97.1
d1akya1	180	Adenylate kinase {Baker's yeast (Saccharomyces cer	97.1
d1lvga_	190	Guanylate kinase {Mouse (Mus musculus) [TaxId: 100	97.1
d1r0wa_	281	Cystic fibrosis transmembrane conductance regulato	97.08
d1zp6a1	176	Hypothetical protein Atu3015 {Agrobacterium tumefa	97.07
d1v43a3	239	Hypothetical protein PH0022, N-terminal domain {Py	97.06
d2onka1	240	Molybdate/tungstate import ATP-binding protein Wtp	97.05
d1khta_	190	Adenylate kinase {Archaeon Methanococcus voltae [T	97.02
d1g2912	240	Maltose transport protein MalK, N-terminal domain	96.99
d1lv7a_	256	AAA domain of cell division protein FtsH {Escheric	96.97
d3dhwc1	240	Methionine import ATP-binding protein MetN {Escher	96.96
d3d31a2	229	Sulfate/molybdate ABC transporter, ATP-binding pro	96.96
d1knqa_	171	Gluconate kinase {Escherichia coli [TaxId: 562]}	96.95
d1ji0a_	240	Branched chain aminoacid ABC transporter {Thermoto	96.95
d1m8pa3	183	ATP sulfurylase C-terminal domain {Fungus (Penicil	96.94
d1s96a_	205	Guanylate kinase {Escherichia coli [TaxId: 562]}	96.93
d1qvra2	387	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	96.92
d1l7vc_	231	ABC transporter involved in vitamin B12 uptake, Bt	96.92
d2hyda1	255	Putative multidrug export ATP-binding/permease pro	96.92
d1viaa_	161	Shikimate kinase (AroK) {Campylobacter jejuni [Tax	96.91
d1vpla_	238	Putative ABC transporter TM0544 {Thermotoga mariti	96.89
d1qhxa_	178	Chloramphenicol phosphotransferase {Streptomyces v	96.88
d3adka_	194	Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}	96.88
d1b0ua_	258	ATP-binding subunit of the histidine permease {Sal	96.82
d1ixsb2	239	Holliday junction helicase RuvB {Thermus thermophi	96.79
d1e6ca_	170	Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax	96.79
d1q3ta_	223	CMP kinase {Streptococcus pneumoniae [TaxId: 1313]	96.79
d1g6ha_	254	MJ1267 {Archaeon Methanococcus jannaschii [TaxId:	96.78
d1uj2a_	213	Uridine-cytidine kinase 2 {Human (Homo sapiens) [T	96.77
d1gvnb_	273	Plasmid maintenance system epsilon/zeta, toxin zet	96.75
d1oxxk2	242	Glucose transport protein GlcV, N-terminal domain	96.74
d1in4a2	238	Holliday junction helicase RuvB {Thermotoga mariti	96.71
d1g6oa_	323	Hexameric traffic ATPase, HP0525 {Helicobacter pyl	96.63
d1x6va3	195	Adenosine-5'phosphosulfate kinase (APS kinase) {Hu	96.62
d1nksa_	194	Adenylate kinase {Archaeon Sulfolobus acidocaldari	96.62
d1sxja2	253	Replication factor C1 {Baker's yeast (Saccharomyce	96.57
d1iqpa2	231	Replication factor C {Archaeon Pyrococcus furiosus	96.5
d2vp4a1	197	Deoxyribonucleoside kinase {Fruit fly (Drosophila	96.48
d1uf9a_	191	Dephospho-CoA kinase {Thermus thermophilus [TaxId:	96.46
d1ckea_	225	CMP kinase {Escherichia coli [TaxId: 562]}	96.46
d1fnna2	276	CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T	96.39
d1sxjb2	224	Replication factor C4 {Baker's yeast (Saccharomyce	96.27
d1sq5a_	308	Pantothenate kinase PanK {Escherichia coli [TaxId:	96.24
d1sxjd2	237	Replication factor C2 {Baker's yeast (Saccharomyce	96.2
d1ofha_	309	HslU {Haemophilus influenzae [TaxId: 727]}	96.17
d1htwa_	158	Hypothetical protein HI0065 {Haemophilus influenza	96.17
d1sxje2	252	Replication factor C5 {Baker's yeast (Saccharomyce	96.12
d1sxjc2	227	Replication factor C3 {Baker's yeast (Saccharomyce	96.1
d2fnaa2	283	Archaeal ATPase SSO1545 {Sulfolobus solfataricus [	96.09
d1ixza_	247	AAA domain of cell division protein FtsH {Thermus	96.05
d1m7ga_	208	Adenosine-5'phosphosulfate kinase (APS kinase) {Fu	95.98
d1e32a2	258	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.96
d1a7ja_	288	Phosphoribulokinase {Rhodobacter sphaeroides [TaxI	95.94
d1w5sa2	287	CDC6-like protein APE0152, N-terminal domain {Aero	95.93
g1f2t.1	292	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	95.76
d1gsia_	208	Thymidylate kinase {Mycobacterium tuberculosis [Ta	95.72
d1vhta_	208	Dephospho-CoA kinase {Escherichia coli [TaxId: 562	95.68
d1r7ra3	265	Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu	95.63
d1jjva_	205	Dephospho-CoA kinase {Haemophilus influenzae [TaxI	95.61
d1odfa_	286	Hypothetical protein Ygr205W {Baker's yeast (Sacch	95.59
d1p9ra_	401	Extracellular secretion NTPase EpsE {Vibrio choler	95.49
d1kkma_	176	HPr kinase HprK C-terminal domain {Lactobacillus c	95.32
d1n0wa_	242	DNA repair protein Rad51, catalytic domain {Human	95.32
d1knxa2	177	HPr kinase HprK C-terminal domain {Mycoplasma pneu	95.3
d1svma_	362	Papillomavirus large T antigen helicase domain {Si	95.2
d1a5ta2	207	delta prime subunit of DNA polymerase III, N-domai	95.18
d4tmka_	210	Thymidylate kinase {Escherichia coli [TaxId: 562]}	95.17
d2a5yb3	277	CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI	95.11
d1p5zb_	241	Deoxycytidine kinase {Human (Homo sapiens) [TaxId:	95.1
d1g41a_	443	HslU {Haemophilus influenzae [TaxId: 727]}	95.06
d2ocpa1	241	Deoxyguanosine kinase {Human (Homo sapiens) [TaxId	95.02
d1pzna2	254	DNA repair protein Rad51, catalytic domain {Archae	94.94
d1ko7a2	169	HPr kinase HprK C-terminal domain {Staphylococcus	94.93
d1szpa2	251	DNA repair protein Rad51, catalytic domain {Baker'	94.88
d1nn5a_	209	Thymidylate kinase {Human (Homo sapiens) [TaxId: 9	94.85
g1xew.1	329	Smc head domain {Pyrococcus furiosus [TaxId: 2261]	94.81
d1qhla_	222	Cell division protein MukB {Escherichia coli [TaxI	94.73
g1ii8.1	369	Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]}	94.64
d1tf7a2	242	Circadian clock protein KaiC {Synechococcus sp. st	94.39
d1g8pa_	333	ATPase subunit of magnesium chelatase, BchI {Rhodo	94.31
d1deka_	241	Deoxynucleoside monophosphate kinase {Bacteriophag	94.25
d2i1qa2	258	DNA repair protein Rad51, catalytic domain {Archae	94.17
d1w44a_	321	NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}	94.14
d1w1wa_	427	Smc head domain {Baker's yeast (Saccharomyces cere	94.13
d1l8qa2	213	Chromosomal replication initiation factor DnaA {Aq	94.0
d1v5wa_	258	Meiotic recombination protein DMC1/LIM15 homolog {	94.0
d1e69a_	308	Smc head domain {Thermotoga maritima [TaxId: 2336]	93.93
d1tuea_	205	Replication protein E1 helicase domain {Human papi	93.92
d1njfa_	239	delta prime subunit of DNA polymerase III, N-domai	93.91
d1osna_	331	Thymidine kinase {Varicella-zoster virus [TaxId: 1	93.91
d1um8a_	364	ClpX {Helicobacter pylori [TaxId: 210]}	93.89
d1r6bx3	315	ClpA, an Hsp100 chaperone, AAA+ modules {Escherich	93.86
d1cr2a_	277	Gene 4 protein (g4p, DNA primase), helicase domain	93.54
d1tmka_	214	Thymidylate kinase {Baker's yeast (Saccharomyces c	93.47
d1tf7a1	242	Circadian clock protein KaiC {Synechococcus sp. st	93.3
d1p6xa_	333	Thymidine kinase {Equine herpesvirus type 4 [TaxId	93.05
d1e2ka_	329	Thymidine kinase {Herpes simplex virus type 1, dif	92.69
d1uaaa1	306	DEXX box DNA helicase {Escherichia coli, RepD [Tax	92.52
d1nlfa_	274	Hexameric replicative helicase repA {Escherichia c	92.41
d1e9ra_	433	Bacterial conjugative coupling protein TrwB {Esche	92.38
d1pjra1	318	DEXX box DNA helicase {Bacillus stearothermophilus	92.12
d1u0ja_	267	Rep 40 protein helicase domain {Adeno-associated v	91.92
d1xpua3	289	Transcription termination factor Rho, ATPase domai	91.86
d1g3qa_	237	Cell division regulator MinD {Archaeon Pyrococcus	91.55
d1qvra3	315	ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2	90.41
d1w36d1	359	Exodeoxyribonuclease V alpha chain (RecD) {Escheri	90.24
d1cp2a_	269	Nitrogenase iron protein {Clostridium pasteurianum	89.08
d2gnoa2	198	gamma subunit of DNA polymerase III, N-domain {The	88.61
d1xx6a1	141	Thymidine kinase, TK1, N-terminal domain {Clostrid	88.6
d2jdid3	276	Central domain of beta subunit of F1 ATP synthase	88.28
d1u94a1	263	RecA protein, ATPase-domain {Escherichia coli [Tax	88.03
d1ny5a2	247	Transcriptional activator sigm54 (NtrC1), C-termin	87.7
d1a1va1	136	HCV helicase domain {Human hepatitis C virus (HCV)	87.66
d1g8fa3	122	ATP sulfurylase C-terminal domain {Baker's yeast (	87.6
d2b8ta1	139	Thymidine kinase, TK1, N-terminal domain {Ureaplas	86.93
d1ihua1	296	Arsenite-translocating ATPase ArsA {Escherichia co	86.68
d1byia_	224	Dethiobiotin synthetase {Escherichia coli [TaxId:	86.09
d2afhe1	289	Nitrogenase iron protein {Azotobacter vinelandii [	85.86
d1ihua2	279	Arsenite-translocating ATPase ArsA {Escherichia co	85.72
d2jdia3	285	Central domain of alpha subunit of F1 ATP synthase	84.46
d1xp8a1	268	RecA protein, ATPase-domain {Deinococcus radiodura	82.55
d1xbta1	133	Thymidine kinase, TK1, N-terminal domain {Human (H	82.28
g1qhh.1	623	DEXX box DNA helicase {Bacillus stearothermophilus	81.75
d1c9ka_	180	Adenosylcobinamide kinase/adenosylcobinamide phosp	81.6
d1wb9a2	234	DNA repair protein MutS, the C-terminal domain {Es	80.78
d1fx0a3	276	Central domain of alpha subunit of F1 ATP synthase	80.33

>d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Bacillus subtilis [TaxId: 1423]

Probab=99.97  E-value=4e-29  Score=184.83  Aligned_cols=191  Identities=35%  Similarity=0.572  Sum_probs=144.9

Q ss_pred             cccceeeeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCC
Q 027757           18 QIKEVEFVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        18 ~~~~~~~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~   97 (219)
                      .+.++++..+....++.|....++|+|+|.+|||||||+|+|++....+.++..+++|...........+.++|+++...
T Consensus         2 ~~~~~~~~~~~~~~~~~p~~~~~~I~lvG~~n~GKSTLin~L~g~~~~~~~~~~~~~t~~~~~~~~~~~~~~~d~~~~~~   81 (195)
T d1svia_           2 KVTKSEIVISAVKPEQYPEGGLPEIALAGRSNVGKSSFINSLINRKNLARTSSKPGKTQTLNFYIINDELHFVDVPGYGF   81 (195)
T ss_dssp             CCCCEEEEEEESSGGGSCCSCCCEEEEEEBTTSSHHHHHHHHHTC-------------CCEEEEEETTTEEEEECCCBCC
T ss_pred             ceEEEEEEEecCChhHCCCCCCCEEEEECCCCCCHHHHHHHhcCCCceEEeecccceeeecccccccccceEEEEEeecc
Confidence            35678888999999999999999999999999999999999999766677888888887777777778888999999876


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHH
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKS  177 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~  177 (219)
                      .............+...++.....+|++++|+|++++....+.+.++++...++|+++|+||+|+.+..       +.++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~viD~~~~~~~~~~~~~~~l~~~~~piivv~NK~D~~~~~-------~~~~  154 (195)
T d1svia_          82 AKVSKSEREAWGRMIETYITTREELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKG-------KWDK  154 (195)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG-------GHHH
T ss_pred             ccccccccchhhhHHhhhhccccchhhhhhhhhccccccccccccccccccccCcceechhhccccCHH-------HHHH
Confidence            666665555556666677777777899999999999888888888999999999999999999987542       3333


Q ss_pred             HHHHHHhc--CCCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          178 FQQLIREN--YPHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       178 ~~~~~~~~--~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ..+.+...  .....+++++||++|.|+++++++|.+.++
T Consensus       155 ~~~~~~~~l~~~~~~~~~~~SA~~~~gi~el~~~i~~~l~  194 (195)
T d1svia_         155 HAKVVRQTLNIDPEDELILFSSETKKGKDEAWGAIKKMIN  194 (195)
T ss_dssp             HHHHHHHHHTCCTTSEEEECCTTTCTTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcccCCCCEEEEeCCCCCCHHHHHHHHHHHhC
Confidence            33333221  234467999999999999999999998875

>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab3a
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.94  E-value=2e-26  Score=166.45  Aligned_cols=156  Identities=15%  Similarity=0.197  Sum_probs=120.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|.+..+.....+..+.+..........   .+.+|||||          ++.+..+++.+
T Consensus         5 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~wDt~G----------~e~~~~~~~~~   74 (169)
T d3raba_           5 MFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAG----------QERYRTITTAY   74 (169)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEETTEEEEEEEEEECC----------SGGGHHHHHTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHcCCCCcccccccccceeeEEEEeecceEEEEEEECCC----------chhhHHHHHHH
Confidence            47999999999999999999998877777777777666655555443   688999998          34567788888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HH---HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CA---NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~---~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|++++.+..... ..   ........|+++|+||+|+...  ..+..++.+.+.+..+      .+
T Consensus        75 ~~~---ad~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~~--~~v~~~~~~~~~~~~~------~~  143 (169)
T d3raba_          75 YRG---AMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMEDE--RVVSSERGRQLADHLG------FE  143 (169)
T ss_dssp             TTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCSCCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------CE
T ss_pred             Hhc---CCEEEEEEECccchhhhhhhhhhhhhhcccCCcceEEEEEeecccccc--cccchhhhHHHHHHcC------CE
Confidence            887   99999999999876655432 11   1222367899999999998654  4455566666666554      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||++|.|++++|++|.+.+.
T Consensus       144 ~~e~Sak~g~gv~e~f~~l~~~i~  167 (169)
T d3raba_         144 FFEASAKDNINVKQTFERLVDVIC  167 (169)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             EEEecCCCCcCHHHHHHHHHHHHh
Confidence            999999999999999999988764

>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1.6e-26  Score=167.59  Aligned_cols=162  Identities=16%  Similarity=0.192  Sum_probs=115.8

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSF  111 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~  111 (219)
                      ++...+||+++|.+|+|||||+++|++..+.....++...... .....++   .+.+||++|....          ...
T Consensus         2 ~~~~~~Kv~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~~~d~~g~~~~----------~~~   70 (173)
T d2fn4a1           2 PPSETHKLVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYT-KICSVDGIPARLDILDTAGQEEF----------GAM   70 (173)
T ss_dssp             CSSCEEEEEEEECTTSSHHHHHHHHHHSSCCSSCCTTCCEEEE-EEEEETTEEEEEEEEECCCTTTT----------SCC
T ss_pred             CCCCeEEEEEECCCCcCHHHHHHHHHhCCCCccccccccccee-eEeccCCeeeeeecccccccccc----------ccc
Confidence            4456789999999999999999999987666666555443322 2233333   5778999985422          234


Q ss_pred             HHHHhhccCCccEEEEEEeCCCCCCcccHH-HHH----HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          112 TKGYFLNRESLVGVLLLIDASVPPQKIDLD-CAN----WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       112 ~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~----~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      ...+++.   +|++|+|+|++++.++.... ...    .....+.|+++|+||+|+...  +....++.+.+.+..+   
T Consensus        71 ~~~~~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~---  142 (173)
T d2fn4a1          71 REQYMRA---GHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ--RQVPRSEASAFGASHH---  142 (173)
T ss_dssp             HHHHHHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHTT---
T ss_pred             cchhhcc---ceeeeeecccccccccchhhhhhHHHHHHhccCCCceEEEEEeechhhc--cccchhhhhHHHHhcC---
Confidence            4666777   89999999999877665431 111    122367899999999998754  3344455555555433   


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                         ++++++||++|.|++++|+.+.+.+.+.+
T Consensus       143 ---~~~~e~Sak~g~gv~e~f~~l~~~i~k~~  171 (173)
T d2fn4a1         143 ---VAYFEASAKLRLNVDEAFEQLVRAVRKYQ  171 (173)
T ss_dssp             ---CEEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             ---CEEEEEeCCCCcCHHHHHHHHHHHHHHHh
Confidence               68999999999999999999999877654

>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rad
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=2.1e-26  Score=166.14  Aligned_cols=153  Identities=13%  Similarity=0.072  Sum_probs=104.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|.+.. .....++.+.+... ....++   .+.+||+||.          +.+..++..+
T Consensus         1 ifKi~lvG~~~vGKTsLi~~~~~~~-~~~~~~~~~~~~~~-~i~~~~~~~~l~i~D~~g~----------e~~~~~~~~~   68 (168)
T d2gjsa1           1 VYKVLLLGAPGVGKSALARIFGGVE-DGPEAEAAGHTYDR-SIVVDGEEASLMVYDIWEQ----------DGGRWLPGHC   68 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHTC----------CEEEEE-EEEETTEEEEEEEEECC-----------------CHHHH
T ss_pred             CeEEEEECCCCcCHHHHHHHHhCCc-cCCcCCeeeeeecc-eeeccccccceeeeecccc----------cccceecccc
Confidence            3699999999999999999999974 33333333333322 222233   6788999883          3456677888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ++.   +|++|+|+|++++.+....  ..|+.       ..++|+++|+||+|+...  +++...+.+++.+..+     
T Consensus        69 ~~~---~d~~ilv~d~t~~~s~~~~--~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--~~v~~~~~~~~~~~~~-----  136 (168)
T d2gjsa1          69 MAM---GDAYVIVYSVTDKGSFEKA--SELRVQLRRARQTDDVPIILVGNKSDLVRS--REVSVDEGRACAVVFD-----  136 (168)
T ss_dssp             HTS---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHCC--CCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT-----
T ss_pred             hhh---hhhhceecccccccccccc--ccccchhhcccccccceEEEeecccchhhh--cchhHHHHHHHHHhcC-----
Confidence            888   9999999999987776543  22222       256899999999999764  4455666666666654     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       ++++++||++|.|++++|+.|.+.+..
T Consensus       137 -~~~~e~Sak~~~~v~~~f~~l~~~i~~  163 (168)
T d2gjsa1         137 -CKFIETSAALHHNVQALFEGVVRQIRL  163 (168)
T ss_dssp             -SEEEECBTTTTBSHHHHHHHHHHHHHH
T ss_pred             -CEEEEEeCCCCcCHHHHHHHHHHHHHH
Confidence             589999999999999999999876544

>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab23
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=2e-26  Score=165.64  Aligned_cols=152  Identities=19%  Similarity=0.261  Sum_probs=115.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|++..+...+.++.+.+........++   .+.++||+|...          +..+...++
T Consensus         3 iKv~liG~~~vGKSsLi~rl~~~~~~~~~~~ti~~~~~~~~~~~~~~~~~~~i~d~~g~~~----------~~~~~~~~~   72 (164)
T d1z2aa1           3 IKMVVVGNGAVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVNDEDVRLMLWDTAGQEE----------FDAITKAYY   72 (164)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEETTEEEEEEEECCTTGGG----------TTCCCHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccceeeeeecCceeeeeeeccCCccc----------hhhhhhhhh
Confidence            6899999999999999999998767777777777665544444443   678999998432          222335566


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|++++.+....  ..|+.     ..++|+++|+||+|+...  +++..++.+++.+.++      ++
T Consensus        73 ~~---~~~~i~v~d~~~~~s~~~~--~~~~~~i~~~~~~~~iilVgnK~Dl~~~--~~v~~~~~~~~~~~~~------~~  139 (164)
T d1z2aa1          73 RG---AQACVLVFSTTDRESFEAI--SSWREKVVAEVGDIPTALVQNKIDLLDD--SCIKNEEAEGLAKRLK------LR  139 (164)
T ss_dssp             TT---CCEEEEEEETTCHHHHHTH--HHHHHHHHHHHCSCCEEEEEECGGGGGG--CSSCHHHHHHHHHHHT------CE
T ss_pred             cc---CceEEEEEeccchhhhhhc--ccccccccccCCCceEEEeeccCCcccc--eeeeehhhHHHHHHcC------CE
Confidence            66   8999999999998776553  23332     268999999999998764  4455566677766654      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++++|++|.+.+
T Consensus       140 ~~e~Sak~g~~v~e~f~~l~~~~  162 (164)
T d1z2aa1         140 FYRTSVKEDLNVSEVFKYLAEKH  162 (164)
T ss_dssp             EEECBTTTTBSSHHHHHHHHHHH
T ss_pred             EEEeccCCCcCHHHHHHHHHHHH
Confidence            99999999999999999987754

>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein RalA
species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]

Probab=99.94  E-value=8.4e-26  Score=163.00  Aligned_cols=154  Identities=17%  Similarity=0.196  Sum_probs=116.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|++..+...+.++.+...... ...++   .+.++|++|..          .+..+...+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~-~~~~~~~~~l~i~d~~g~~----------~~~~~~~~~   72 (168)
T d1u8za_           4 LHKVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKK-VVLDGEEVQIDILDTAGQE----------DYAAIRDNY   72 (168)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEE-EEETTEEEEEEEEECCC-------------CHHHHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccCCccccccccc-ccccccccccccccccccc----------chhhhhhhc
Confidence            46999999999999999999998877777777666543322 22333   57789998842          335677888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHh-------ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWL-------GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~-------~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ++.   +|++++|+|+++..+....  ..|+       ...+.|+++|+||+|+...  +.+..++.+++.+.++     
T Consensus        73 ~~~---~~~~ilv~d~~~~~s~~~~--~~~~~~i~~~~~~~~~piiivgnK~Dl~~~--~~v~~~~~~~~~~~~~-----  140 (168)
T d1u8za_          73 FRS---GEGFLCVFSITEMESFAAT--ADFREQILRVKEDENVPFLLVGNKSDLEDK--RQVSVEEAKNRADQWN-----  140 (168)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHHCCTTSCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT-----
T ss_pred             ccc---cceeEEEeeccchhhhhhH--HHHHHHHHHhhCCCCCcEEEEecccccccc--ccccHHHHHHHHHHcC-----
Confidence            888   8999999999987776543  2232       2367899999999998653  4566667777776655     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       ++++++||++|.|++++|++|.+.++.
T Consensus       141 -~~~~e~Sak~g~gv~e~f~~l~~~i~~  167 (168)
T d1u8za_         141 -VNYVETSAKTRANVDKVFFDLMREIRA  167 (168)
T ss_dssp             -CEEEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             -CeEEEEcCCCCcCHHHHHHHHHHHHHC
Confidence             689999999999999999999887653

>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab30
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=1e-25  Score=162.96  Aligned_cols=154  Identities=17%  Similarity=0.195  Sum_probs=116.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+.....+..+.+.....+..++   .+.+|||||          ++.|..+++.+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G----------~e~~~~~~~~~   74 (171)
T d2ew1a1           5 LFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAG----------QERFRSITQSY   74 (171)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECC----------SGGGHHHHGGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceEEEEEEEECCEEEEEEEEECCC----------chhhHHHHHHH
Confidence            47999999999999999999999866666666666555544444444   577899998          45667888888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++++|+|++++.+..... ....+   ...+.|+++|+||+|+...  ..+..++.+++.+..+      ++
T Consensus        75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~ilvgnK~D~~~~--~~v~~~~~~~~~~~~~------~~  143 (171)
T d2ew1a1          75 YRS---ANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER--REVSQQRAEEFSEAQD------MY  143 (171)
T ss_dssp             STT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CSSCHHHHHHHHHHHT------CC
T ss_pred             Hhc---cceEEEeeecccchhhhhhhhhhhhhcccccccccEEEEEeecccccc--cchhhhHHHHHHHhCC------CE
Confidence            888   89999999999876654431 12222   2367899999999998754  3445556666665544      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ++++||++|.|++++|.+|.+.
T Consensus       144 ~~~~SAktg~gV~e~f~~l~~~  165 (171)
T d2ew1a1         144 YLETSAKESDNVEKLFLDLACR  165 (171)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHH
T ss_pred             EEEEccCCCCCHHHHHHHHHHH
Confidence            9999999999999999887654

>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: di-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=3.6e-26  Score=165.31  Aligned_cols=156  Identities=17%  Similarity=0.187  Sum_probs=115.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+...+.++.+...... ...++   .+.++|++|..          .+......+
T Consensus         2 ~~Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~~~~~~~-~~~~~~~~~l~~~d~~g~~----------~~~~~~~~~   70 (171)
T d2erxa1           2 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQV-ISCDKSICTLQITDTTGSH----------QFPAMQRLS   70 (171)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSCEEEEEE-EEETTEEEEEEEEECCSCS----------SCHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHhCCCCCccCcceeeccccc-eeeccccceeccccccccc----------ccccccccc
Confidence            47999999999999999999999866666666665433222 22333   46778998843          346677788


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ++.   +|++|+|+|++++.+..... ....+.     ..++|+++|+||+|+...  +++..++.+++.+.++      
T Consensus        71 ~~~---a~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilVgnK~Dl~~~--~~v~~~e~~~~~~~~~------  139 (171)
T d2erxa1          71 ISK---GHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS--REVQSSEAEALARTWK------  139 (171)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT------
T ss_pred             ccc---eeEEEEEeecccccchhcccchhhhhhhhhccCCCCcEEEEeeccccccc--ccccHHHHHHHHHHcC------
Confidence            888   89999999999877665531 111121     267899999999998654  4455666777766654      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++++||++|.|++++|+.|.+.+++
T Consensus       140 ~~~~e~Sak~~~~v~e~f~~l~~~~~~  166 (171)
T d2erxa1         140 CAFMETSAKLNHNVKELFQELLNLEKR  166 (171)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHTCCS
T ss_pred             CeEEEEcCCCCcCHHHHHHHHHHHHHH
Confidence            689999999999999999999887654

>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: r-Ras2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.94  E-value=5.7e-26  Score=164.33  Aligned_cols=159  Identities=13%  Similarity=0.209  Sum_probs=116.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+.....++.+....... ..++   .+.++|++|..          .+......+
T Consensus         5 ~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~-~~~~~~~~~~~~d~~g~~----------~~~~~~~~~   73 (171)
T d2erya1           5 KYRLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQC-VIDDRAARLDILDTAGQE----------EFGAMREQY   73 (171)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEEEEEEE-EETTEEEEEEEEECC--------------CCHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHhCCCCcccCcccccceeeee-eecccccccccccccccc----------ccccccccc
Confidence            479999999999999999999988666666666664443332 2333   57889998853          224556777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHH-----HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDC-----ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~-----~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|.+++.+.....-     .+.......|+++|+||+|+...  +.+..++.+++.+.++      +
T Consensus        74 ~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~--~~v~~~~~~~~~~~~~------~  142 (171)
T d2erya1          74 MRT---GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMILIGNKADLDHQ--RQVTQEEGQQLARQLK------V  142 (171)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCSEEEEEECTTCTTS--CSSCHHHHHHHHHHTT------C
T ss_pred             ccc---cceEEEeeccccccchhhHHHHhHHHHhhcccCCCCEEEEEeccchhhh--ccchHHHHHHHHHHcC------C
Confidence            777   899999999999877655321     12222367899999999998654  4455566666666543      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhhcC
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYWDQ  219 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~~~  219 (219)
                      +++++||++|.|++++|..|.+.+++.++
T Consensus       143 ~~~e~Sak~~~~i~e~f~~l~~~i~k~~~  171 (171)
T d2erya1         143 TYMEASAKIRMNVDQAFHELVRVIRKFQE  171 (171)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHHHHTC
T ss_pred             EEEEEcCCCCcCHHHHHHHHHHHHHHhhC
Confidence            89999999999999999999999887654

>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.93  E-value=1.3e-25  Score=163.50  Aligned_cols=159  Identities=24%  Similarity=0.230  Sum_probs=112.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ..|+|+|.+|+|||||+|+|++. ......+.++++......   ..+..+.++||||......  ....   .+....+
T Consensus         6 ~~I~lvG~~~~GKSSLin~l~~~-~~~~~~~~~~tt~~~~~~~~~~~~~~~~~~DtpG~~~~~~--~~~~---~~~~~~~   79 (178)
T d1wf3a1           6 GFVAIVGKPNVGKSTLLNNLLGV-KVAPISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMD--ALGE---FMDQEVY   79 (178)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHTS-CCSCCCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCS--HHHH---HHHHHHH
T ss_pred             cEEEEECCCCCCHHHHHHHHhCC-CceeecccCCcccccccceeeeeeeeeeeccccccccccc--ccch---hcccccc
Confidence            36999999999999999999997 455666667666544332   2234799999999753322  2222   2233333


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhcc--CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEE
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGR--NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIM  194 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~--~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (219)
                      .....+|++|+|+|++++....+....++++.  .++|+++|+||+|+....         ++..+.+...++. ..+++
T Consensus        80 ~~~~~ad~il~v~D~~~~~~~~~~~i~~~l~~~~~~~piilv~NK~Dl~~~~---------~~~~~~~~~~~~~-~~~~~  149 (178)
T d1wf3a1          80 EALADVNAVVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKYP---------EEAMKAYHELLPE-AEPRM  149 (178)
T ss_dssp             HHTSSCSEEEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSSH---------HHHHHHHHHTSTT-SEEEE
T ss_pred             cccccccceeeeechhhhhcccccchhhheeccccchhhhhhhcccccccCH---------HHHHHHHHhhccc-CceEE
Confidence            44455999999999999877766666666654  578999999999986531         2233333333332 47899


Q ss_pred             eecCCCCChHHHHHHHHHHH
Q 027757          195 TSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       195 ~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +||++|.|+++|+++|.+.+
T Consensus       150 iSA~~~~gi~~L~~~i~~~l  169 (178)
T d1wf3a1         150 LSALDERQVAELKADLLALM  169 (178)
T ss_dssp             CCTTCHHHHHHHHHHHHTTC
T ss_pred             EecCCCCCHHHHHHHHHHhC
Confidence            99999999999999998754

>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-like estrogen-regulated growth inhibitor, RERG
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=3.2e-25  Score=159.92  Aligned_cols=157  Identities=18%  Similarity=0.135  Sum_probs=117.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .+||+++|++|+|||||+++|++..+...+.++.+..........+  ..+.+||++|....           .....++
T Consensus         2 eiKi~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~~~~~~~~~~~~~~~~l~i~D~~g~~~~-----------~~~~~~~   70 (168)
T d2atva1           2 EVKLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLESTYRHQATIDDEVVSMEILDTAGQEDT-----------IQREGHM   70 (168)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEEEEEEEEECCCCCCC-----------HHHHHHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCCCCccCCceeccccccccccccceEEEEeeccccccc-----------ccchhhh
Confidence            4799999999999999999999987777777776655443333222  26789999985311           1234566


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHh-----ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWL-----GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~-----~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      +.   +|++++|+|++++.++.......+.     ...+.|+++|+||+|+...  +.+..++.+++.+.++      ++
T Consensus        71 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~--r~V~~~e~~~~a~~~~------~~  139 (168)
T d2atva1          71 RW---GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS--RQVSTEEGEKLATELA------CA  139 (168)
T ss_dssp             HH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT------SE
T ss_pred             cc---cccceeecccCCccchhhhhhhcccccccccccCcceeeeccchhhhhh--ccCcHHHHHHHHHHhC------Ce
Confidence            66   8999999999998777665332222     1267999999999998654  4566677777777664      68


Q ss_pred             eEEeecCCCC-ChHHHHHHHHHHHhhh
Q 027757          192 WIMTSSVTGL-GRDELLLHMSQLRNYW  217 (219)
Q Consensus       192 ~~~~Sa~~~~-~v~el~~~l~~~~~~~  217 (219)
                      ++++||++|. |++++|..|.+.+.+.
T Consensus       140 ~~e~Saktg~gnV~e~F~~l~~~i~~~  166 (168)
T d2atva1         140 FYECSACTGEGNITEIFYELCREVRRR  166 (168)
T ss_dssp             EEECCTTTCTTCHHHHHHHHHHHHHHH
T ss_pred             EEEEccccCCcCHHHHHHHHHHHHHHh
Confidence            9999999998 5999999998876554

>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.4e-25  Score=161.06  Aligned_cols=152  Identities=16%  Similarity=0.203  Sum_probs=115.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+++|++..+.....+..+..........++   .+.+||++|.          +.+......++
T Consensus         1 fKv~vvG~~~vGKTsLi~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~~~~   70 (164)
T d1yzqa1           1 FKLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRLQLWDTAGQ----------ERFRSLIPSYI   70 (164)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEECSSCEEEEEEEEECCS----------GGGGGGHHHHH
T ss_pred             CEEEEECCCCcCHHHHHHHHHhCCCCCccccceeeeccceeeccCCCceeeeecccCCc----------chhccchHHHh
Confidence            5899999999999999999998877777777766666555554443   5779999884          33455667788


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ..   +|++++|+|++++.+....  ..|+.      ..+.|+++|+||+|+...  +.+..++..++.+..+      +
T Consensus        71 ~~---~~~~ilv~d~~~~~s~~~i--~~~~~~~~~~~~~~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~------~  137 (164)
T d1yzqa1          71 RD---SAAAVVVYDITNVNSFQQT--TKWIDDVRTERGSDVIIMLVGNKTDLADK--RQVSIEEGERKAKELN------V  137 (164)
T ss_dssp             TT---CSEEEEEEETTCHHHHHTH--HHHHHHHHHHHTTSSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------C
T ss_pred             hc---cceEEEeeccccccchhhh--HhhHHHHHHhcCCCceEEEEecccchhhh--hhhhHHHHHHHHHHcC------C
Confidence            77   8999999999988776553  22222      268999999999998754  3344445555555433      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +++++||++|.|++++|++|.+.+
T Consensus       138 ~~~e~SAk~g~~v~e~f~~i~~~l  161 (164)
T d1yzqa1         138 MFIETSAKAGYNVKQLFRRVAAAL  161 (164)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHS
T ss_pred             EEEEecCCCCcCHHHHHHHHHHhh
Confidence            899999999999999999998864

>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab14
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.5e-25  Score=160.15  Aligned_cols=155  Identities=21%  Similarity=0.220  Sum_probs=115.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+|+|.+|+|||||+++|++..+.....+..+.+........++   .+.++|+||          ++.+..+...+
T Consensus         4 ~~KivlvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~~~~~~   73 (166)
T d1z0fa1           4 IFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAG----------QERFRAVTRSY   73 (166)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEETTEEEEEEEEECTT----------GGGTCHHHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccccceeEEEEECCEEEEEEEeccCC----------chhHHHHHHHH
Confidence            47999999999999999999998866666666666555544444444   678899998          34456778888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHH---hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANW---LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~---~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|+++..+..... ....   ......|+++++||+|+...  ..+..++.+.+.+...      ++
T Consensus        74 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~--~~~~~~~~~~~~~~~~------~~  142 (166)
T d1z0fa1          74 YRG---AAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ--RDVTYEEAKQFAEENG------LL  142 (166)
T ss_dssp             HHT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------CE
T ss_pred             hcC---CcEEEEEeccCchHHHHHHHHHHHHHHhhccccceEEEEcccccchhh--cccHHHHHHHHHHHcC------CE
Confidence            888   89999999999876655432 1122   22367899999999998654  3344445555554432      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++|+|+.+.+.+
T Consensus       143 ~~e~Saktg~~v~e~f~~i~~~i  165 (166)
T d1z0fa1         143 FLEASAKTGENVEDAFLEAAKKI  165 (166)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHh
Confidence            99999999999999999987753

>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein ypt7p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=6e-26  Score=164.70  Aligned_cols=159  Identities=17%  Similarity=0.249  Sum_probs=107.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC----eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK----SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~----~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .+||+++|++|+|||||+++|++..+...+.++.+.+.........+    .+.++||+|..          .+...+..
T Consensus         2 ~~Ki~~vG~~~vGKSsLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~   71 (175)
T d1ky3a_           2 ILKVIILGDSGVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDGDKVATMQVWDTAGQE----------RFQSLGVA   71 (175)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSSSCCEEEEEECCC--------------------C
T ss_pred             eEEEEEECCCCcCHHHHHHHHHcCCCCCccCcccccceeeeeeeecCcccccceeeccCCch----------hhhhHHHH
Confidence            57999999999999999999998877776666665444433332222    46789998842          22345555


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE  184 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~  184 (219)
                      +++.   +|++++|+|++++.++....  .|+.          ..++|+++|+||+|+.... ..+..+..+++.+.++.
T Consensus        72 ~~~~---~~~~ilv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~~~~piilv~nK~Dl~~~~-~~v~~~~~~~~~~~~~~  145 (175)
T d1ky3a_          72 FYRG---ADCCVLVYDVTNASSFENIK--SWRDEFLVHANVNSPETFPFVILGNKIDAEESK-KIVSEKSAQELAKSLGD  145 (175)
T ss_dssp             CSTT---CCEEEEEEETTCHHHHHTHH--HHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG-CCSCHHHHHHHHHHTTS
T ss_pred             Hhhc---cceEEEEeecccccccchhh--hcchhhhhhhhhcccccCcEEEEecccchhhhh-cchhHHHHHHHHHHcCC
Confidence            6655   89999999999887765432  2222          1478999999999987542 33444555555554332


Q ss_pred             cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          185 NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       185 ~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                           .+++++||++|.|++++|++|.+.+-+.+
T Consensus       146 -----~~~~e~SA~~g~gv~e~f~~l~~~~l~~~  174 (175)
T d1ky3a_         146 -----IPLFLTSAKNAINVDTAFEEIARSALQQN  174 (175)
T ss_dssp             -----CCEEEEBTTTTBSHHHHHHHHHHHHHHHH
T ss_pred             -----CeEEEEeCCCCcCHHHHHHHHHHHHHhcc
Confidence                 68999999999999999999988665443

>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-22a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=1.1e-25  Score=162.11  Aligned_cols=155  Identities=18%  Similarity=0.264  Sum_probs=117.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|+...+...+.++.+..........+.   .+.++|++|.          +.+..+...+
T Consensus         4 ~~Ki~lvG~~~vGKTsli~rl~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~----------~~~~~~~~~~   73 (167)
T d1z0ja1           4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGL----------ERFRALAPMY   73 (167)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------GGGGGGTHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccccccccccccceeeeecCCc----------hhhhHHHHHH
Confidence            57999999999999999999999877777777777766655555444   4678899884          3345566777


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHH----HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCA----NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|++++.++......    ......+.|+++|+||+|+...  +.+..++.+++.+..+      ++
T Consensus        74 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~--~~v~~~~~~~~~~~~~------~~  142 (167)
T d1z0ja1          74 YRG---SAAAIIVYDITKEETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV--REVMERDAKDYADSIH------AI  142 (167)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------CE
T ss_pred             Hhh---ccceEEEeeechhhhhhhHHHhhhhhhhccCCcceEEEecccchhccc--cchhHHHHHHHHHHcC------CE
Confidence            777   8999999999987776553221    1122378899999999999654  4455556666655533      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++++|.+|.+.+
T Consensus       143 ~~e~SAk~~~nV~e~f~~l~~~i  165 (167)
T d1z0ja1         143 FVETSAKNAININELFIEISRRI  165 (167)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHC
T ss_pred             EEEEecCCCCCHHHHHHHHHHhC
Confidence            99999999999999999998765

>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: cH-p21 Ras protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=5.4e-25  Score=158.36  Aligned_cols=153  Identities=17%  Similarity=0.251  Sum_probs=114.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC--eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK--SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~--~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .+||+++|++|+|||||+++|++..+.....++.+..........+.  .+.++|++|.          +.+......++
T Consensus         3 e~Ki~viG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~----------~~~~~~~~~~~   72 (166)
T d1ctqa_           3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQ----------EEYSAMRDQYM   72 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEEEEETTEEEEEEEEEECCC----------GGGHHHHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHhCCCCCccCCccceeeccceeeeceeeeeeeeeccCc----------cccccchhhhh
Confidence            47999999999999999999999876666666666554443332222  4778888874          33456778888


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +.   ++++++|+|++++.+.....  .|+.       ..++|+++|+||+|+..   ..+..++.+.+.+..+      
T Consensus        73 ~~---~~~~iiv~d~~~~~s~~~~~--~~~~~i~~~~~~~~~piilv~nK~Dl~~---~~~~~~~~~~~~~~~~------  138 (166)
T d1ctqa_          73 RT---GEGFLCVFAINNTKSFEDIH--QYREQIKRVKDSDDVPMVLVGNKCDLAA---RTVESRQAQDLARSYG------  138 (166)
T ss_dssp             HH---CSEEEEEEETTCHHHHHTHH--HHHHHHHHHHTCSSCCEEEEEECTTCSC---CCSCHHHHHHHHHHHT------
T ss_pred             hc---ccccceeecccccccHHHHH--HHHHHHHHhcCCCCCeEEEEeccccccc---ccccHHHHHHHHHHhC------
Confidence            88   89999999999877765532  2222       35789999999999864   3344556666666554      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++++||++|.|++++|.++.+.++
T Consensus       139 ~~~~e~Sak~g~gi~e~f~~i~~~i~  164 (166)
T d1ctqa_         139 IPYIETSAKTRQGVEDAFYTLVREIR  164 (166)
T ss_dssp             CCEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             CeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence            68999999999999999999988765

>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap2a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.4e-25  Score=160.34  Aligned_cols=154  Identities=19%  Similarity=0.182  Sum_probs=114.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|++|+|||||+++|++..+.....++.+..... ....+.   .+.+||++|.          ..+......
T Consensus         2 k~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~~~d~~g~----------~~~~~~~~~   70 (167)
T d1kaoa_           2 REYKVVVLGSGGVGKSALTVQFVTGTFIEKYDPTIEDFYRK-EIEVDSSPSVLEILDTAGT----------EQFASMRDL   70 (167)
T ss_dssp             CEEEEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEE-EEEETTEEEEEEEEECCCT----------TCCHHHHHH
T ss_pred             ceeEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeeeeee-eeecCcceEeeccccCCCc----------cccccchHH
Confidence            35799999999999999999999987666666666543332 222333   5778999884          233567788


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHHHhc-------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCANWLG-------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      +++.   +|++++|+|++++.+....  ..|..       ..++|+++|+||+|+...  +.+..++...+.+..+    
T Consensus        71 ~~~~---a~~~ilv~d~~~~~s~~~~--~~~~~~~~~~~~~~~~piilvgnK~Dl~~~--~~~~~~~~~~~~~~~~----  139 (167)
T d1kaoa_          71 YIKN---GQGFILVYSLVNQQSFQDI--KPMRDQIIRVKRYEKVPVILVGNKVDLESE--REVSSSEGRALAEEWG----  139 (167)
T ss_dssp             HHHH---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHTTTSCCCEEEEEECGGGGGG--CCSCHHHHHHHHHHHT----
T ss_pred             Hhhc---ccceeeeeeecchhhhhhh--hchhhhhhhhccCCCCCEEEEEEccchhhc--ccchHHHHHHHHHHcC----
Confidence            8888   8999999999987776543  23321       257899999999998764  3344455556555544    


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                        ++++++||++|.|++++|+++.+.+.
T Consensus       140 --~~~~e~Sak~g~~i~e~f~~i~~~i~  165 (167)
T d1kaoa_         140 --CPFMETSAKSKTMVDELFAEIVRQMN  165 (167)
T ss_dssp             --SCEEEECTTCHHHHHHHHHHHHHHHH
T ss_pred             --CeEEEECCCCCcCHHHHHHHHHHHHc
Confidence              58999999999999999999987653

>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab27b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-25  Score=163.38  Aligned_cols=155  Identities=19%  Similarity=0.269  Sum_probs=113.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec-------------CeEEEEeCCCCCCCCCCcchh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN-------------KSWYIVDLPGYGFAKAPDVTR  105 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~-------------~~~~liDtpg~~~~~~~~~~~  105 (219)
                      .+||+++|++|+|||||+++|++..+...+.++.+.+........+             ..+.++||+|          +
T Consensus         5 ~~Ki~ivG~~~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~dt~G----------~   74 (186)
T d2f7sa1           5 LIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAG----------Q   74 (186)
T ss_dssp             EEEEEEESCTTSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEES----------H
T ss_pred             EEEEEEECCCCcCHHHHHHHHhcCCCCCccCCcccceeeEEEEEEecccccccccccceEEeccccCCc----------c
Confidence            4799999999999999999999876655554444433322222111             1355666655          6


Q ss_pred             hhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-------CCCcEEEEEEcccccccccCCCchHhHHHH
Q 027757          106 MDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-------NNIPLTFVFTKCDKMKVAKGRRPDENIKSF  178 (219)
Q Consensus       106 ~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-------~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~  178 (219)
                      +.|..++..+++.   +|++|+|+|++++.+...  +..|+..       ...|+++|+||+|+...  +++..++..++
T Consensus        75 e~~~~~~~~~~~~---~~~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~--~~v~~~e~~~~  147 (186)
T d2f7sa1          75 ERFRSLTTAFFRD---AMGFLLMFDLTSQQSFLN--VRNWMSQLQANAYCENPDIVLIGNKADLPDQ--REVNERQAREL  147 (186)
T ss_dssp             HHHHHHHHHHHTT---CCEEEEEEETTCHHHHHH--HHHHHHTCCCCCTTTCCEEEEEEECTTCGGG--CCSCHHHHHHH
T ss_pred             hhhHHHHHHHHhc---CCEEEEEEecccccccee--eeeccchhhhhccCCCceEEEEeeeccchhh--hcchHHHHHHH
Confidence            7888999999988   999999999998766543  3344432       45789999999999764  45556666666


Q ss_pred             HHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          179 QQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       179 ~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      .+..+      ++++++||++|.|++++|++|.+.+.+
T Consensus       148 ~~~~~------~~~~e~Sak~~~~i~e~f~~l~~~i~~  179 (186)
T d2f7sa1         148 ADKYG------IPYFETSAATGQNVEKAVETLLDLIMK  179 (186)
T ss_dssp             HHHTT------CCEEEEBTTTTBTHHHHHHHHHHHHHH
T ss_pred             HHHcC------CEEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            65533      689999999999999999999886543

>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab4a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.8e-25  Score=161.09  Aligned_cols=156  Identities=21%  Similarity=0.204  Sum_probs=115.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+.....++.+.+........+.   .+.+|||||          ++.+..+++.+
T Consensus         5 ~~KI~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~D~~G----------~~~~~~~~~~~   74 (174)
T d2bmea1           5 LFKFLVIGNAGTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYVKLQIWDTAG----------QERFRSVTRSY   74 (174)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEETTEEEEEEEEEECC----------SGGGHHHHHTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccceeeEEEEecCcceeEEEEECCC----------chhhhhhHHHH
Confidence            47999999999999999999998766666677766665544444433   578999998          33456777877


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHH-HH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDC-AN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|.+++.+...... ..   .....++|+++|+||+|+...  .+........+.+..+      ++
T Consensus        75 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piivv~nK~D~~~~--~~~~~~~~~~~~~~~~------~~  143 (174)
T d2bmea1          75 YRG---AAGALLVYDITSRETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD--REVTFLEASRFAQENE------LM  143 (174)
T ss_dssp             STT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT------CE
T ss_pred             hhh---CCEEEEEEecccchhHHHHhhhhcccccccCCceEEEEEEecccccch--hchhhhHHHHHHHhCC------CE
Confidence            777   899999999998766654321 11   122367999999999998654  3344444455544432      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||++|.|++++|+++.+.+.
T Consensus       144 ~~e~Sak~~~gi~e~f~~l~~~i~  167 (174)
T d2bmea1         144 FLETSALTGENVEEAFVQCARKIL  167 (174)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEeeCCCCcCHHHHHHHHHHHHH
Confidence            999999999999999999977644

>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab21
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=1.1e-25  Score=162.10  Aligned_cols=153  Identities=22%  Similarity=0.259  Sum_probs=113.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+.....++.+..........++   .+.+||++|..          .+..++..+
T Consensus         3 ~fKivlvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~   72 (167)
T d1z08a1           3 SFKVVLLGEGCVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIGGKRVNLAIWDTAGQE----------RFHALGPIY   72 (167)
T ss_dssp             EEEEEEECCTTSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESSSCEEEEEEEECCCC-----------------CCS
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccchheeeeccCCccceeeeeccCCcc----------eecccchhh
Confidence            46999999999999999999999877777777777666555554443   57889998843          234455666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      ++.   +|++|+|+|++++.++...  ..|+.      ....|+++|+||+|+...  +.+..++.+++.+..+      
T Consensus        73 ~~~---~~~~i~v~d~~~~~Sf~~~--~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~--~~v~~~e~~~~a~~~~------  139 (167)
T d1z08a1          73 YRD---SNGAILVYDITDEDSFQKV--KNWVKELRKMLGNEICLCIVGNKIDLEKE--RHVSIQEAESYAESVG------  139 (167)
T ss_dssp             STT---CSEEEEEEETTCHHHHHHH--HHHHHHHHHHHGGGSEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT------
T ss_pred             ccC---CceeEEEEeCCchhHHHhh--hhhhhhcccccccccceeeeccccccccc--cccchHHHHHHHHHcC------
Confidence            666   8999999999998776553  22222      367889999999998765  4455666666665543      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++++||++|.|++++|++|.+.+
T Consensus       140 ~~~~e~Sak~~~~v~e~F~~l~~~i  164 (167)
T d1z08a1         140 AKHYHTSAKQNKGIEELFLDLCKRM  164 (167)
T ss_dssp             CEEEEEBTTTTBSHHHHHHHHHHHH
T ss_pred             CeEEEEecCCCcCHHHHHHHHHHHH
Confidence            6899999999999999999998765

>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein RheB
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=4.5e-26  Score=164.23  Aligned_cols=156  Identities=19%  Similarity=0.179  Sum_probs=113.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..||+++|++|+|||||+++|++..+...+.++.+.... .....++   .+.++|++|.....          .+...+
T Consensus         4 ~~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~-~~~~~~~~~~~l~i~d~~g~~~~~----------~~~~~~   72 (167)
T d1xtqa1           4 SRKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFT-KLITVNGQEYHLQLVDTAGQDEYS----------IFPQTY   72 (167)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEE-EEEEETTEEEEEEEEECCCCCTTC----------CCCGGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccc-eEEecCcEEEEeeecccccccccc----------cccchh
Confidence            469999999999999999999987677666666665432 2223333   57789999864321          122344


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++|+|+|++++.++....     +.+.....++|+++|+||+|+...  +++..++..++.+.++      +
T Consensus        73 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--r~v~~~~~~~~a~~~~------~  141 (167)
T d1xtqa1          73 SID---INGYILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHME--RVISYEEGKALAESWN------A  141 (167)
T ss_dssp             TSS---CCEEEEEEETTCHHHHHHHHHHHHHHHHHHCSSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------C
T ss_pred             hhh---hhhhhhhcccchhhhhhhhhhhhhhhhhcccccccceeeeccccccccc--cchhHHHHHHHHHHcC------C
Confidence            555   89999999999987775531     122223467999999999998664  4455666677766654      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      +++++||++|.|++++|+.|.+.+++
T Consensus       142 ~~~e~Sak~~~~v~~~f~~li~~~~K  167 (167)
T d1xtqa1         142 AFLESSAKENQTAVDVFRRIILEAEK  167 (167)
T ss_dssp             EEEECCTTCHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHhcC
Confidence            89999999999999999999877653

>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab5a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.1e-25  Score=161.11  Aligned_cols=155  Identities=17%  Similarity=0.201  Sum_probs=117.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+.....++.+.+..........   .+.++|++|.          +.+..++..+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~----------~~~~~~~~~~   75 (170)
T d1r2qa_           6 QFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLDDTTVKFEIWDTAGQ----------ERYHSLAPMY   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS----------GGGGGGHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccccccccccceeeccceEEEEEeccCCCc----------hhhhhhHHHH
Confidence            46999999999999999999998877777777777666544444433   5788899883          4456677888


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHH-HH---hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCA-NW---LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~-~~---~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+++|.++..+....... ..   ....+.|+++|+||+|+...  +.+..+..+++.+...      ++
T Consensus        76 ~~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~~--~~v~~e~~~~~~~~~~------~~  144 (170)
T d1r2qa_          76 YRG---AQAAIVVYDITNEESFARAKNWVKELQRQASPNIVIALSGNKADLANK--RAVDFQEAQSYADDNS------LL  144 (170)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG--CCSCHHHHHHHHHHTT------CE
T ss_pred             hhC---cceEEEEeccchhhHHHHHHHHhhhhhhccCCCceEEeeccccccccc--ccccHHHHHHHHHhcC------CE
Confidence            887   8999999999987665543211 11   12367999999999998764  4455566666655433      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++++|+.|.+.+
T Consensus       145 ~~e~SAk~g~~V~e~f~~l~~~i  167 (170)
T d1r2qa_         145 FMETSAKTSMNVNEIFMAIAKKL  167 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHTS
T ss_pred             EEEeeCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999997754

>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rap1A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.93  E-value=2.2e-25  Score=160.55  Aligned_cols=156  Identities=17%  Similarity=0.204  Sum_probs=112.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|+...+...+.++.+...... ...+.   .+.+||++|..          .+..++..+
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~-~~~~~~~~~~~~~d~~g~~----------~~~~~~~~~   71 (167)
T d1c1ya_           3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQ-VEVDCQQCMLEILDTAGTE----------QFTAMRDLY   71 (167)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHCCCCCSCCCCSEEEEEEE-EESSSCEEEEEEEEECSSC----------SSTTHHHHH
T ss_pred             eeEEEEECCCCCCHHHHHHHHHcCCCCCccCCcccccccee-EEeeeeEEEeccccccCcc----------ccccccccc
Confidence            57999999999999999999999877766666665443322 22222   57888988853          234566778


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHH-----HHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDC-----ANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~-----~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++|+|+|++++.++.....     .+.....++|+++|+||+|+...  .....++...+.++..     ..
T Consensus        72 ~~~---~~~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~~p~ilvgnK~Dl~~~--~~~~~~~~~~~~~~~~-----~~  141 (167)
T d1c1ya_          72 MKN---GQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE--RVVGKEQGQNLARQWC-----NC  141 (167)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT-----SC
T ss_pred             ccc---cceeEEeeeccchhhhHhHHHHHHHHHHhcCCCCCeEEEEEEecCcccc--cccchhHHHHHHHHhC-----CC
Confidence            888   899999999999877766421     11122367899999999998764  3333344444444322     26


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||++|.|++++|++|.+.+.
T Consensus       142 ~~~e~Sak~g~gv~e~F~~l~~~i~  166 (167)
T d1c1ya_         142 AFLESSAKSKINVNEIFYDLVRQIN  166 (167)
T ss_dssp             EEEECBTTTTBSHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCcCHHHHHHHHHHHhc
Confidence            8999999999999999999987654

>d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=5.7e-25  Score=160.98  Aligned_cols=172  Identities=27%  Similarity=0.325  Sum_probs=116.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe-cCeEEEEeCCCCCCC--CCCcchhhhHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV-NKSWYIVDLPGYGFA--KAPDVTRMDWSSFT  112 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~-~~~~~liDtpg~~~~--~~~~~~~~~~~~~~  112 (219)
                      ..+||+|+|.+|+|||||+|+|++. ....+...++++....  .... +..+.++|+||+...  .+...+........
T Consensus         7 ~~~kV~iiG~~~~GKSTLin~l~~~-~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~~~   85 (186)
T d1mkya2           7 DAIKVAIVGRPNVGKSTLFNAILNK-ERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRV   85 (186)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHTS-TTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHHCC-CcceeecccccccccceeeeccCCceeeeeccCCccccccccccccccchhHHH
Confidence            4689999999999999999999997 4555666666665542  2333 447899999997532  22222222222333


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCC
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHP  190 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  190 (219)
                      ..++..   +|++++|+|+..+.......+..++...+.|+++|+||+|+......     ...++.+.+....  ....
T Consensus        86 ~~~~~~---~dvii~v~d~~~~~~~~~~~~~~~~~~~~~~~i~v~nK~D~~~~~~~-----~~~~~~~~~~~~~~~~~~~  157 (186)
T d1mkya2          86 VDSIEK---ADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVHREK-----RYDEFTKLFREKLYFIDYS  157 (186)
T ss_dssp             HHHHHH---CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTTGGG-----CHHHHHHHHHHHCGGGTTS
T ss_pred             HHHHhc---CCEEEEeecccccchhhHHHHHHHHHHcCCceeeeccchhhhcchhh-----hhhhHHHHHHHHhcccCCC
Confidence            333444   89999999999988888778888888899999999999998764321     2233333332221  2346


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                      +++++||++|.|+++|+++|.+.++.|.
T Consensus       158 ~i~~vSa~~g~gv~~L~~~i~~~~~~~~  185 (186)
T d1mkya2         158 PLIFTSADKGWNIDRMIDAMNLAYASYT  185 (186)
T ss_dssp             CEEECBTTTTBSHHHHHHHHHHHHHHHT
T ss_pred             eEEEEeCCCCCCHHHHHHHHHHHHHhCC
Confidence            8999999999999999999999988775

>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ras-related protein M-Ras (XRas)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.93  E-value=7.1e-25  Score=158.22  Aligned_cols=156  Identities=17%  Similarity=0.224  Sum_probs=115.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||++++++..+...+.++.+...... ...++   .+.+||++|..          .+..+...+
T Consensus         4 t~Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~-~~~~~~~~~~~i~d~~g~~----------~~~~~~~~~   72 (169)
T d1x1ra1           4 TYKLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKH-TEIDNQWAILDVLDTAGQE----------EFSAMREQY   72 (169)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCCEEEEEE-EEETTEEEEEEEEECCSCG----------GGCSSHHHH
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCcccCcceeeccccc-ccccccccccccccccccc----------ccccchhhh
Confidence            47999999999999999999999766666666665443322 22232   57789998853          223445677


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-----HHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-----CANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-----~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.++....     +.+.....++|+++++||+|+...  +++..++..++.+..+      +
T Consensus        73 ~~~---~~~~llv~d~~d~~Sf~~~~~~~~~i~~~~~~~~~p~ilvgnK~Dl~~~--~~v~~e~~~~~~~~~~------~  141 (169)
T d1x1ra1          73 MRT---GDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPMILVANKVDLMHL--RKVTRDQGKEMATKYN------I  141 (169)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCSTT--CCSCHHHHHHHHHHHT------C
T ss_pred             hhh---ccEEEEecccccchhhhccchhhHHHHhhccccCccEEEEecccchhhh--ceeehhhHHHHHHHcC------C
Confidence            777   89999999999987766532     122222367999999999998764  3455566777776655      6


Q ss_pred             CeEEeecCCCC-ChHHHHHHHHHHHhh
Q 027757          191 PWIMTSSVTGL-GRDELLLHMSQLRNY  216 (219)
Q Consensus       191 ~~~~~Sa~~~~-~v~el~~~l~~~~~~  216 (219)
                      +++++||+++. |++++|..+.+...+
T Consensus       142 ~~~e~Sak~~~~nV~~~F~~l~~~i~~  168 (169)
T d1x1ra1         142 PYIETSAKDPPLNVDKTFHDLVRVIRQ  168 (169)
T ss_dssp             CEEEEBCSSSCBSHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCcCHHHHHHHHHHHHHh
Confidence            89999999876 999999999887654

>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoQ
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.4e-25  Score=164.25  Aligned_cols=161  Identities=12%  Similarity=0.037  Sum_probs=113.0

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTK  113 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~  113 (219)
                      ....+||+|+|.+|+|||||+++|+...+...+.++.+..........+  ..+.+||++|..          .|..++.
T Consensus         6 ~~~~~Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~l~i~D~~g~e----------~~~~~~~   75 (185)
T d2atxa1           6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQE----------DYDRLRP   75 (185)
T ss_dssp             EEEEEEEEEEECTTSSHHHHHHHHHHSSCCCSCCCSSCCCEEEEEESSSCEEEEEEECCCCSS----------SSTTTGG
T ss_pred             CCcEEEEEEECCCCCCHHHHHHHHhhCCCCCcCCCceeeeeeEEEeeCCceEEeecccccccc----------hhhhhhh
Confidence            3446899999999999999999999987666666665543332222212  257799999843          2334456


Q ss_pred             HHhhccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEcccccccc----------cCCCchHhHHHHH
Q 027757          114 GYFLNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQ  179 (219)
Q Consensus       114 ~~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~  179 (219)
                      .+++.   +|++++|+|++++.++....  ....+.  ..+.|+++|+||+|+.+..          .+.+..++..++.
T Consensus        76 ~~~~~---a~~~ilv~d~t~~~Sf~~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~~~~~~~~~~~~~r~v~~~~~~~~a  152 (185)
T d2atxa1          76 LSYPM---TDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLA  152 (185)
T ss_dssp             GGCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHH
T ss_pred             hcccc---cceeeeccccchHHHHHHHHHHHHHHHHhcCCCCCeeEeeeccccccchhhhhhhhhcccccccHHHHHHHH
Confidence            67766   89999999999987764321  111111  3678999999999987532          2344555555665


Q ss_pred             HHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          180 QLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       180 ~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +.++.     ++++++||++|.|++++|+.+.+.+
T Consensus       153 ~~~~~-----~~~~E~SAk~~~gv~e~F~~li~~i  182 (185)
T d2atxa1         153 KEIGA-----CCYVECSALTQKGLKTVFDEAIIAI  182 (185)
T ss_dssp             HHHTC-----SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HHcCC-----CEEEEecCCCCcCHHHHHHHHHHHH
Confidence            55543     6899999999999999999887654

>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein engB
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.92  E-value=2.1e-24  Score=157.55  Aligned_cols=168  Identities=26%  Similarity=0.322  Sum_probs=115.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCC-CcchhhhHHHHH-HHHhhc
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA-PDVTRMDWSSFT-KGYFLN  118 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~-~~~~~~~~~~~~-~~~~~~  118 (219)
                      .|+++|.+|+|||||+|+|++..  ..+++.+++|+....+.. ..+.++||||+..... ....+..+.... ..+...
T Consensus         2 ~I~lvG~~nvGKSsLin~l~~~~--~~~~~~~g~T~~~~~~~~-~~~~ivDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (184)
T d2cxxa1           2 TIIFAGRSNVGKSTLIYRLTGKK--VRRGKRPGVTRKIIEIEW-KNHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN   78 (184)
T ss_dssp             EEEEEEBTTSSHHHHHHHHHSCC--CSSSSSTTCTTSCEEEEE-TTEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC--ceeeCCCCEeeccccccc-ccceecccCCceeccccccccccccchhhhhhhhhc
Confidence            58999999999999999999974  357788888877655443 4578899999764332 222223222222 223334


Q ss_pred             cCCccEEEEEEeCCC-----------CCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCC
Q 027757          119 RESLVGVLLLIDASV-----------PPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYP  187 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~-----------~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~  187 (219)
                      .+.+|++++|+|+..           .....+.+..+++...++|+++|+||+|+....     +...+.+.+.+...+.
T Consensus        79 ~~~~d~~~~vvD~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~p~iiv~NK~D~~~~~-----~~~~~~~~~~~~~~~~  153 (184)
T d2cxxa1          79 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKNV-----QEVINFLAEKFEVPLS  153 (184)
T ss_dssp             GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSCH-----HHHHHHHHHHHTCCGG
T ss_pred             ccccchheeeeeccccchhhhhhhhccccHHHHHHHHHHHHcCCCEEEEEeeeehhhhH-----HHHHHHHHHHhccccc
Confidence            445899999999863           345555677788888899999999999986431     1223333333322111


Q ss_pred             C-CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          188 H-HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       188 ~-~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      . ...++++||++|.|+++|+++|.+.+.+
T Consensus       154 ~~~~~~~~vSA~~g~gi~~L~~~i~~~l~e  183 (184)
T d2cxxa1         154 EIDKVFIPISAKFGDNIERLKNRIFEVIRE  183 (184)
T ss_dssp             GHHHHEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             ccCCeEEEEECCCCCCHHHHHHHHHHHccC
Confidence            1 2347899999999999999999988764

>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab2b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=4e-25  Score=160.12  Aligned_cols=156  Identities=19%  Similarity=0.196  Sum_probs=110.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|++..+.....+....+........+.   .+.++|++|..          .+..+++.+
T Consensus         3 ~~KivvvG~~~vGKTsli~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~~~   72 (173)
T d2a5ja1           3 LFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQE----------SFRSITRSY   72 (173)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGG----------GTSCCCHHH
T ss_pred             eEEEEEECCCCcCHHHHHHHHhcCCCCCCcccceeeccceeeeeeeeeEEEEEeecccCcc----------chhhHHHHH
Confidence            36899999999999999999998866666666555555444443333   57889998842          233445666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHH---HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CAN---WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~---~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|++++.+..... .+.   .....++|+++|+||+|+...  +....++...+.+...      .+
T Consensus        73 ~~~---~d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~~~piilv~nK~D~~~~--~~~~~~~~~~~a~~~~------~~  141 (173)
T d2a5ja1          73 YRG---AAGALLVYDITRRETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR--RDVKREEGEAFAREHG------LI  141 (173)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------CE
T ss_pred             hhc---cCEEEEEEeecChHHHHhHHHHHHHHHHhCCCCCeEEEEecCCchhhh--hhhHHHHHHHHHHHcC------CE
Confidence            666   89999999999987765532 111   112367899999999998654  3344555666655544      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||++|.|++++|.++.+.+.
T Consensus       142 ~~e~Sa~tg~~V~e~f~~i~~~i~  165 (173)
T d2a5ja1         142 FMETSAKTACNVEEAFINTAKEIY  165 (173)
T ss_dssp             EEEECTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEecCCCCCCHHHHHHHHHHHHH
Confidence            999999999999999999988543

>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoA
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=2.1e-25  Score=162.18  Aligned_cols=157  Identities=15%  Similarity=0.139  Sum_probs=108.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +.||+++|++|+|||||+++|++..+...+.++.+..... ....++   .+.+||++|.          +.|..++..+
T Consensus         2 r~KivvvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~-~~~~~~~~~~l~i~D~~g~----------~~~~~~~~~~   70 (177)
T d1kmqa_           2 RKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVA-DIEVDGKQVELALWDTAGL----------EDYDRLRPLS   70 (177)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEE-EEEETTEEEEEEEEEECCS----------GGGTTTGGGG
T ss_pred             cEEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeeccc-cccccccceeeeccccCcc----------chhcccchhh
Confidence            4689999999999999999999986666666655433322 222222   5889999884          3334555677


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEcccccccc----------cCCCchHhHHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQQL  181 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~  181 (219)
                      ++.   +|++|+|+|++++.++....  ....+.  ..+.|+++|+||+|+....          ...+..++...+.+.
T Consensus        71 ~~~---~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~e~~~~a~~  147 (177)
T d1kmqa_          71 YPD---TDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANR  147 (177)
T ss_dssp             CTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECGGGTTCHHHHHHHHHTTCCCCCHHHHHHHHHH
T ss_pred             ccc---chhhhhhcccchhHHHHHHHHHHHHHHHHhCCCCceEEeeecccccchhhHHHHHHHhhcccccHHHHHHHHHH
Confidence            777   89999999999877654321  111111  2579999999999986532          122333344444443


Q ss_pred             HHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          182 IRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       182 ~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++.     .+++++||++|.|++++|+.+.+.+
T Consensus       148 ~~~-----~~~~E~SAkt~~gi~e~F~~i~~~~  175 (177)
T d1kmqa_         148 IGA-----FGYMECSAKTKDGVREVFEMATRAA  175 (177)
T ss_dssp             TTC-----SEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             cCC-----cEEEEecCCCCcCHHHHHHHHHHHH
Confidence            321     5799999999999999999998765

>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein GEM
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.1e-24  Score=157.63  Aligned_cols=160  Identities=14%  Similarity=0.154  Sum_probs=109.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccccc-ccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELAL-TSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      -+||+++|++|+|||||+++|++..+... ..++.+.......+..++   .+.+||+++       ..|++.|  +...
T Consensus         3 ~~Kv~lvG~~~vGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~~-------~~g~e~~--~~~~   73 (172)
T d2g3ya1           3 YYRVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVDGESATIILLDMWE-------NKGENEW--LHDH   73 (172)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEETTEEEEEEEECCTT-------TTHHHHH--HHHC
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCcCCccccccceeeecceeeeccCCceeeeeeecccc-------ccccccc--cccc
Confidence            47999999999999999999998643222 222223222223333333   467888876       3355544  4555


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHH-HHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDC-ANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHH  189 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~-~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (219)
                      +++.   +|++|+|+|++++.+...... ...+.    ..++|+++|+||+|+...  +++..++.+++.+..+      
T Consensus        74 ~~~~---~~~~ilvfd~t~~~s~~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~~--~~v~~~~~~~~a~~~~------  142 (172)
T d2g3ya1          74 CMQV---GDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVRC--REVSVSEGRACAVVFD------  142 (172)
T ss_dssp             CCCC---CSEEEEEEETTCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGGG--CCSCHHHHHHHHHHHT------
T ss_pred             cccc---cceeeeeecccccchhhhhhhhhhhhhhccccCCceEEEEecccccccc--ccccHHHHHHHHHHcC------
Confidence            6666   899999999998776654321 11122    257999999999998764  4455555566655543      


Q ss_pred             CCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                      ++++++||++|.|++++|+.|.+.++..+
T Consensus       143 ~~~~e~Sak~g~~i~~~f~~l~~~i~~rr  171 (172)
T d2g3ya1         143 CKFIETSAAVQHNVKELFEGIVRQVRLRR  171 (172)
T ss_dssp             CEEEECBTTTTBSHHHHHHHHHHHHHHHC
T ss_pred             CeEEEEeCCCCcCHHHHHHHHHHHHHHcc
Confidence            68999999999999999999998876654

>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Ytp1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.6e-25  Score=161.82  Aligned_cols=157  Identities=17%  Similarity=0.207  Sum_probs=114.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+|+|++|+|||||+++|++..+...+.++.+.+........++   .+.+|||||...          |..++..+
T Consensus         6 ~~KivvvG~~~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~l~i~Dt~G~e~----------~~~~~~~~   75 (194)
T d2bcgy1           6 LFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELDGKTVKLQIWDTAGQER----------FRTITSSY   75 (194)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEETTEEEEEEEECCTTTTT----------TTCCCGGG
T ss_pred             EEEEEEECCCCcCHHHHHHHHhhCCCCCCcCCccceeEEEEEEEEeeEEEEEEEEECCCchh----------hHHHHHHH
Confidence            57999999999999999999998877777778877776654444433   688899999432          23344566


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HH---HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CA---NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~---~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|++++.+..... ..   ........|+++|+||+|+.+.  .....+....+.....      .+
T Consensus        76 ~~~---a~~~i~v~d~t~~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~~--~~~~~~~~~~~~~~~~------~~  144 (194)
T d2bcgy1          76 YRG---SHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKDK--RVVEYDVAKEFADANK------MP  144 (194)
T ss_dssp             GTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT--CCSCHHHHHHHHHHTT------CC
T ss_pred             hcc---CCEEEEEEeCcchhhhhhHhhhhhhhhhcccCCceEEEEEeccccccc--cchhHHHHhhhhhccC------cc
Confidence            666   89999999999876665432 11   1222467899999999998764  3333444444443322      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++||++|.|++++|+++.+.+..
T Consensus       145 ~~e~SAk~g~gi~e~f~~l~~~i~~  169 (194)
T d2bcgy1         145 FLETSALDSTNVEDAFLTMARQIKE  169 (194)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             eEEEecCcCccHHHHHHHHHHHHHH
Confidence            9999999999999999999876543

>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-related protein Sec4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=8.9e-25  Score=157.19  Aligned_cols=157  Identities=19%  Similarity=0.213  Sum_probs=111.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+...+.++.+.+.....+..++   .+.+|||||.          +.|..++..+
T Consensus         2 ~~Ki~vvG~~~vGKTSli~~l~~~~~~~~~~~t~~~~~~~~~i~~~~~~~~~~i~Dt~G~----------~~~~~~~~~~   71 (166)
T d1g16a_           2 IMKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKVKLQIWDTAGQ----------ERFRTITTAY   71 (166)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHCCCCC-------CCEEEEEEESSSCEEEEEEECCTTG----------GGTSCCCHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCCccceeEEEEEEEECCEEEEEEEEECCCc----------hhhHHHHHHH
Confidence            47999999999999999999999876666667776666554444444   5778999993          2233445667


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHH----HHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCA----NWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~----~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|.+++.+.......    ........|++++.+|.|+.+.   ....++.+++....+      .+
T Consensus        72 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~i~~~~k~d~~~~---~~~~~~~~~~~~~~~------~~  139 (166)
T d1g16a_          72 YRG---AMGIILVYDITDERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDMETR---VVTADQGEALAKELG------IP  139 (166)
T ss_dssp             HTT---EEEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTC---CSCHHHHHHHHHHHT------CC
T ss_pred             Hhc---CCEEEEEEECCCccCHHHHHhhhhhhhccccCcceeeeecchhhhhhh---hhhHHHHHHHHHhcC------Ce
Confidence            777   9999999999998766553211    1222367889999999998653   234455555555443      69


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++||+++.|++++|++|.+.+++.
T Consensus       140 ~~~~Sa~~~~~v~e~f~~l~~~i~~k  165 (166)
T d1g16a_         140 FIESSAKNDDNVNEIFFTLAKLIQEK  165 (166)
T ss_dssp             EEECBTTTTBSHHHHHHHHHHHHHHT
T ss_pred             EEEECCCCCCCHHHHHHHHHHHHHhc
Confidence            99999999999999999999987664

>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab11b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.7e-24  Score=157.07  Aligned_cols=155  Identities=21%  Similarity=0.251  Sum_probs=108.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|++..+.....+..+..........++   .+.++|+||.          +.|..++..+
T Consensus         4 ~~Ki~vvG~~~vGKTsLi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~d~~g~----------e~~~~~~~~~   73 (175)
T d2f9la1           4 LFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQ----------ERYRRITSAY   73 (175)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSG----------GGTTCCCHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCcccccccceeeeEEEEECCEEEEEEecccCCc----------HHHHHHHHHH
Confidence            47999999999999999999999877777777776665555454444   6789999983          2333444566


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|.+++.+..... .+..+   ...++|+++|+||+|+.+..  ....+....+.+...      .+
T Consensus        74 ~~~---~~~~i~v~d~~~~~S~~~~~~~~~~i~~~~~~~~piilvgnK~Dl~~~~--~~~~~~~~~~~~~~~------~~  142 (175)
T d2f9la1          74 YRG---AVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSDLRHLR--AVPTDEARAFAEKNN------LS  142 (175)
T ss_dssp             HTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGGC--CSCHHHHHHHHHHTT------CE
T ss_pred             hhc---cCeEEEEEECCCcccchhHHHHHHHHHHhcCCCCcEEEEEeeecccccc--cchHHHHHHhhcccC------ce
Confidence            666   89999999999877665532 12212   23678999999999987642  222233333333222      58


Q ss_pred             eEEeecCCCCChHHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ++++||++|.|++++|+++.+.+
T Consensus       143 ~~e~Sa~~g~~i~e~f~~l~~~i  165 (175)
T d2f9la1         143 FIETSALDSTNVEEAFKNILTEI  165 (175)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHH
T ss_pred             EEEEecCCCcCHHHHHHHHHHHH
Confidence            99999999999999999987754

>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ran
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=1.3e-25  Score=162.25  Aligned_cols=151  Identities=14%  Similarity=0.249  Sum_probs=106.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|++..+...+.++.+..........++   .+.+|||+|          +..+..++..+
T Consensus         3 ~~Ki~vvG~~~vGKTsli~~~~~~~f~~~~~~Ti~~~~~~~~~~~~~~~~~l~i~D~~g----------~~~~~~~~~~~   72 (170)
T d1i2ma_           3 QFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAG----------QEKFGGLRDGY   72 (170)
T ss_dssp             EEEEEEEECTTSSHHHHHHTTC-----CCEEEETTEEEEEEEECBTTCCEEEEEEECTT----------HHHHSSCGGGG
T ss_pred             eEEEEEECCCCcCHHHHHHHHHhCCCCcccccceecccccccccccccccccccccccc----------ccccceecchh
Confidence            46999999999999999999999876666666666555444343333   688999988          33334455667


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++++|+|++++.++....  .|+.     ..++|+++|+||+|+......+   + ...+..      ...+
T Consensus        73 ~~~---~~~~ilv~d~~~~~Sf~~~~--~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~---~-~~~~~~------~~~~  137 (170)
T d1i2ma_          73 YIQ---AQCAIIMFDVTSRVTYKNVP--NWHRDLVRVCENIPIVLCGNKVDIKDRKVKA---K-SIVFHR------KKNL  137 (170)
T ss_dssp             TTT---CCEEEEEEETTSGGGGTTHH--HHHHHHHHHHCSCCEEEEEECCCCSCSCCTT---T-SHHHHS------SCSS
T ss_pred             ccc---ccchhhccccccccccchhH--HHHHHHhhccCCCceeeecchhhhhhhhhhh---H-HHHHHH------HcCC
Confidence            766   89999999999988876642  2332     2689999999999987653221   1 111211      1236


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +++++||++|.|++++|++|.+.+
T Consensus       138 ~~~e~Sak~~~~v~e~f~~l~~~l  161 (170)
T d1i2ma_         138 QYYDISAKSNYNFEKPFLWLARKL  161 (170)
T ss_dssp             EEEEEBTTTTBTTTHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHH
Confidence            899999999999999999998754

>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase Der, N-terminal and middle domains
species: Thermotoga maritima [TaxId: 2336]

Probab=99.92  E-value=4.5e-24  Score=154.20  Aligned_cols=161  Identities=21%  Similarity=0.195  Sum_probs=105.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe---cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV---NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~---~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      .|+++|.+|+|||||+|+|++. .....+..+++|........   ...+.++|+||+..........    ......+.
T Consensus         2 ~V~liG~~n~GKSsLi~~L~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~~g~~~~~~~~~~~----~~~~~~~~   76 (171)
T d1mkya1           2 TVLIVGRPNVGKSTLFNKLVKK-KKAIVEDEEGVTRDPVQDTVEWYGKTFKLVDTCGVFDNPQDIISQ----KMKEVTLN   76 (171)
T ss_dssp             EEEEECCTTSSHHHHHHHHHC---------------CCSEEEEEETTEEEEEEECTTTTSSGGGCCCH----HHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHhCC-CcceecccCceeeccccccccccccccccccccceeeeecccccc----cccccccc
Confidence            6899999999999999999996 45566667777765433322   3368999999975443322222    12222222


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  197 (219)
                      ....+|++++++|+++.....+..+..++...++|+++|+||+|+...        ...+....+....  ..+++++||
T Consensus        77 ~~~~ad~i~~~~~~~~~~~~~~~~~~~~l~~~~~pviiv~NK~Dl~~~--------~~~~~~~~~~~~~--~~~~i~iSA  146 (171)
T d1mkya1          77 MIREADLVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLRE--------FEREVKPELYSLG--FGEPIPVSA  146 (171)
T ss_dssp             HHTTCSEEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHHH--------HHHHTHHHHGGGS--SCSCEECBT
T ss_pred             ccccCcEEEEeecccccccccccccccccccccccccccchhhhhhhh--------hhhHHHHHHHhcC--CCCeEEEec
Confidence            233489999999999988887777778888889999999999998753        1122222322222  246799999


Q ss_pred             CCCCChHHHHHHHHHHHhh
Q 027757          198 VTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       198 ~~~~~v~el~~~l~~~~~~  216 (219)
                      ++|.|+++++++|.+.+..
T Consensus       147 k~g~gid~L~~~i~~~l~e  165 (171)
T d1mkya1         147 EHNINLDTMLETIIKKLEE  165 (171)
T ss_dssp             TTTBSHHHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHhCCC
Confidence            9999999999999987654

>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL3 [TaxId: 10090]

Probab=99.92  E-value=2.8e-24  Score=155.90  Aligned_cols=155  Identities=16%  Similarity=0.174  Sum_probs=107.4

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      +...+||+++|++|+|||||+|+|.+..+ ..+.+..+.+..  .... +..+.++|++|.          ..+...+..
T Consensus        13 ~~~~~kI~vvG~~~vGKSsLi~~l~~~~~-~~~~~~~~~~~~--~i~~~~~~~~i~d~~g~----------~~~~~~~~~   79 (176)
T d1fzqa_          13 PDQEVRILLLGLDNAGKTTLLKQLASEDI-SHITPTQGFNIK--SVQSQGFKLNVWDIGGQ----------RKIRPYWRS   79 (176)
T ss_dssp             CSSCEEEEEEESTTSSHHHHHHHHCCSCC-EEEEEETTEEEE--EEEETTEEEEEEECSSC----------GGGHHHHHH
T ss_pred             CCCEEEEEEECCCCCCHHHHHHHHhcCCC-CcceeeeeeeEE--EeccCCeeEeEeecccc----------ccchhHHHH
Confidence            34578999999999999999999999743 444444443322  2222 336888898873          345677788


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHH--HHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDC--ANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YP  187 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~--~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~  187 (219)
                      ++..   +|++|+|+|+++..+......  .....   ..++|+++|+||+|+.+..       ......+.+...  ..
T Consensus        80 ~~~~---~~~ii~v~d~~d~~s~~~~~~~~~~~~~~~~~~~~pillv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~  149 (176)
T d1fzqa_          80 YFEN---TDILIYVIDSADRKRFEETGQELTELLEEEKLSCVPVLIFANKQDLLTAA-------PASEIAEGLNLHTIRD  149 (176)
T ss_dssp             HHTT---CSEEEEEEETTCGGGHHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCS
T ss_pred             Hhhc---cceeEEeeccccccchhhhhhhhhhhhhhhccCCCeEEEEEEeccccccc-------cHHHHHHHHHHHHHHh
Confidence            8877   899999999998766654311  11111   2678999999999997642       222333332211  12


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ..++++++||++|.|++|+|+||.+.
T Consensus       150 ~~~~~~~~SA~tg~gv~e~~~~l~~~  175 (176)
T d1fzqa_         150 RVWQIQSCSALTGEGVQDGMNWVCKN  175 (176)
T ss_dssp             SCEEEEECCTTTCTTHHHHHHHHHHT
T ss_pred             cCCEEEEEeCCCCCCHHHHHHHHHhc
Confidence            34678999999999999999999864

>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab-33b
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.92  E-value=2.6e-24  Score=154.47  Aligned_cols=152  Identities=20%  Similarity=0.208  Sum_probs=110.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|+...+.....++.+............   .+.++|++|..         ..+...++.+
T Consensus         2 ~~Kv~liG~~~vGKTsLl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~   72 (165)
T d1z06a1           2 IFKIIVIGDSNVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDIDGERIKIQLWDTAGQE---------RFRKSMVQHY   72 (165)
T ss_dssp             EEEEEEECCTTSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEETTEEEEEEEEECCCSH---------HHHTTTHHHH
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCcccccccceeeeeeeccceEEEEEeccCch---------hhccccceee
Confidence            46999999999999999999998767777777666555444443333   67888998842         1222335667


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHH----HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CAN----WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~----~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      ++.   +|++|+|+|++++.+..... ...    .....++|+++|+||+|+...  +++..++.+++.+.++      +
T Consensus        73 ~~~---~d~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~pi~lvgnK~Dl~~~--~~v~~~~~~~~~~~~~------~  141 (165)
T d1z06a1          73 YRN---VHAVVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA--IQVPTDLAQKFADTHS------M  141 (165)
T ss_dssp             HTT---CCEEEEEEETTCHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG--CCSCHHHHHHHHHHTT------C
T ss_pred             ecC---CCceEEEEEeehhhhhhhhhhhhHHHHhhccCCCCeEEEEeccccchhc--cchhHHHHHHHHHHCC------C
Confidence            777   89999999999987776542 111    122367899999999999765  4455666666665543      6


Q ss_pred             CeEEeecCC---CCChHHHHHHH
Q 027757          191 PWIMTSSVT---GLGRDELLLHM  210 (219)
Q Consensus       191 ~~~~~Sa~~---~~~v~el~~~l  210 (219)
                      +++++||++   +.|++++|++|
T Consensus       142 ~~~e~SAkt~~~~~~V~e~F~~l  164 (165)
T d1z06a1         142 PLFETSAKNPNDNDHVEAIFMTL  164 (165)
T ss_dssp             CEEECCSSSGGGGSCHHHHHHHH
T ss_pred             EEEEEecccCCcCcCHHHHHHHh
Confidence            899999997   55999999876

>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab26
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.92  E-value=5.7e-24  Score=153.49  Aligned_cols=156  Identities=20%  Similarity=0.195  Sum_probs=108.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccc-cCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALT-SKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~-~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .+||+++|++|+|||||+++|++..+.... .+..+.+........++   .+.+|||||.          +.+..++..
T Consensus         6 ~fKi~vvG~~~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~----------e~~~~~~~~   75 (170)
T d2g6ba1           6 AFKVMLVGDSGVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVDGVKVKLQMWDTAGQ----------ERFRSVTHA   75 (170)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEETTEEEEEEEEECCCC------------------C
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCcccccceeeeeeEEEEEEecCcEEEEEEEECCCc----------hhhHHHHHH
Confidence            579999999999999999999987544333 33334444433344333   5789999994          334566677


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHHHH----HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDCAN----WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~----~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +++.   +|++++|+|.+++.+........    .......|+++|+||+|+...  ..+..++...+.+..+      +
T Consensus        76 ~~~~---~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~d~~~~--~~v~~~~~~~~~~~~~------~  144 (170)
T d2g6ba1          76 YYRD---AHALLLLYDVTNKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAHE--RVVKREDGEKLAKEYG------L  144 (170)
T ss_dssp             CGGG---CSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTSC--CCSCHHHHHHHHHHHT------C
T ss_pred             hhcC---CceeEEEecCCcccchhhhhhhhhhhhhccCCCceEEEEEeeechhhc--ccccHHHHHHHHHHcC------C
Confidence            7777   89999999999877665532111    112367899999999998764  3444555666666554      6


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||++|.|++++|++|.+.++
T Consensus       145 ~~~e~Sak~g~gi~e~f~~l~~~i~  169 (170)
T d2g6ba1         145 PFMETSAKTGLNVDLAFTAIAKELK  169 (170)
T ss_dssp             CEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCcCHHHHHHHHHHHcC
Confidence            9999999999999999999988765

>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab9a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=5.8e-24  Score=154.04  Aligned_cols=156  Identities=18%  Similarity=0.165  Sum_probs=111.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+++|.+|+|||||+++|++..+...+.++.+..........++   .+.++|++|..          .+......
T Consensus         5 ~~~KI~vvG~~~vGKSSli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~d~~g~~----------~~~~~~~~   74 (174)
T d1wmsa_           5 SLFKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVDGHFVTMQIWDTAGQE----------RFRSLRTP   74 (174)
T ss_dssp             EEEEEEEECCTTSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEETTEEEEEEEEECCCCG----------GGHHHHGG
T ss_pred             ceEEEEEECCCCCCHHHHHHHHHhCCCCCccccceeeeeeeeeeeecCceeeEeeecccCcc----------eehhhhhh
Confidence            357999999999999999999998877777777777766555555444   46788998842          22444555


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHHH-----HHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLDC-----ANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~~-----~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      ++..   +|++++++|.+++.+......     .+...   ..+.|+++|+||+|+..   +.+..++.+++.+...   
T Consensus        75 ~~~~---~~~~i~~~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~~piilVgnK~Dl~~---~~v~~~~~~~~~~~~~---  145 (174)
T d1wmsa_          75 FYRG---SDCCLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE---RQVSTEEAQAWCRDNG---  145 (174)
T ss_dssp             GGTT---CSEEEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCSS---CSSCHHHHHHHHHHTT---
T ss_pred             hhhc---cceEEEEEeeecccccchhhhHHHHHHHHhccccCCCceEEEeccccchhh---ccCcHHHHHHHHHHcC---
Confidence            5555   899999999998766554321     11111   24689999999999854   4456666666655432   


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                        ..+++++||++|.|++++|+++.+.+
T Consensus       146 --~~~~~e~Sak~~~gI~e~f~~l~~~i  171 (174)
T d1wmsa_         146 --DYPYFETSAKDATNVAAAFEEAVRRV  171 (174)
T ss_dssp             --CCCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             --CCeEEEEcCCCCcCHHHHHHHHHHHH
Confidence              26899999999999999999998754

>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: TrmE GTPase domain
species: Thermotoga maritima [TaxId: 2336]

Probab=99.91  E-value=2.4e-24  Score=153.87  Aligned_cols=155  Identities=23%  Similarity=0.298  Sum_probs=110.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE---EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~---~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+|+|++. .....++.++++.....   ...+..+.++||||+............++.... .+
T Consensus         1 ikI~liG~~n~GKSSLin~l~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~~-~~   78 (160)
T d1xzpa2           1 LRMVIVGKPNVGKSTLLNRLLNE-DRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRSETNDLVERLGIERTLQ-EI   78 (160)
T ss_dssp             EEEEEECCHHHHTCHHHHHHHHH-TBCCCCCSSCCSSCSCCEEEEETTEEEEEEESSCCCSSCCTTCCCCCHHHHHH-HH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceeeeccccccccceeEEEEeCCeeEEeccccccccCCccHHHHHHHHHHHH-HH
Confidence            48999999999999999999997 46666777666654322   223347889999997544433333322233322 23


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEee
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTS  196 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S  196 (219)
                      ..   +|++++|+|++++....+..+..++  .+.++++++||+|+.+..       ..++..+.+.    ...+++++|
T Consensus        79 ~~---ad~ii~v~d~~~~~~~~~~~~~~~~--~~~~~i~~~~k~d~~~~~-------~~~~~~~~~~----~~~~~~~vS  142 (160)
T d1xzpa2          79 EK---ADIVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVEKI-------NEEEIKNKLG----TDRHMVKIS  142 (160)
T ss_dssp             HH---CSEEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCCCC-------CHHHHHHHHT----CSTTEEEEE
T ss_pred             Hh---CCEEEEEEeCCCCcchhhhhhhhhc--ccccceeeeeeccccchh-------hhHHHHHHhC----CCCcEEEEE
Confidence            33   7999999999998887766555544  467999999999998642       2333333333    336899999


Q ss_pred             cCCCCChHHHHHHHHH
Q 027757          197 SVTGLGRDELLLHMSQ  212 (219)
Q Consensus       197 a~~~~~v~el~~~l~~  212 (219)
                      |++|.|+++|+++|.+
T Consensus       143 A~~g~gi~~L~~~I~k  158 (160)
T d1xzpa2         143 ALKGEGLEKLEESIYR  158 (160)
T ss_dssp             GGGTCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHh
Confidence            9999999999999865

>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Ypt51
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=6.1e-24  Score=153.34  Aligned_cols=155  Identities=20%  Similarity=0.252  Sum_probs=117.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|++|+|||||+++|++..+...+.++.+..........++   .+.+||++|.          +.+..++..++
T Consensus         4 iKi~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~~~~~~~~i~~~~~~~~l~i~d~~g~----------~~~~~~~~~~~   73 (170)
T d1ek0a_           4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQ----------ERFASLAPMYY   73 (170)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEETTEEEEEEEEEECCS----------GGGGGGHHHHH
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCccccccccceeeccccccccccccccccccCCc----------hhHHHHHHHHH
Confidence            6999999999999999999999877777778777655544444443   6889999884          23344567777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHH----HhccCCCcEEEEEEcccccccc-cCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCAN----WLGRNNIPLTFVFTKCDKMKVA-KGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~----~~~~~~~p~iiv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ..   +|++++|+|.+++.+........    .......|+++++||+|+.+.. .+.+..++..++.+..+      ++
T Consensus        74 ~~---~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~v~nk~d~~~~~~~~~v~~~~~~~~~~~~~------~~  144 (170)
T d1ek0a_          74 RN---AQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEGEKLAEEKG------LL  144 (170)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHT------CE
T ss_pred             hc---cceEEEEEeCCcccchhhhhhhhhhhccccccccceeeeecccccccccchhhhhHHHHHHHHHHcC------CE
Confidence            77   89999999999977765532111    1123678999999999986543 34566666777766654      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHH
Q 027757          192 WIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ++++||++|.|++++|..|.+.
T Consensus       145 ~~e~Sak~g~gV~e~F~~i~~~  166 (170)
T d1ek0a_         145 FFETSAKTGENVNDVFLGIGEK  166 (170)
T ss_dssp             EEECCTTTCTTHHHHHHHHHTT
T ss_pred             EEEecCCCCcCHHHHHHHHHHH
Confidence            9999999999999999988653

>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab8a
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.91  E-value=6.6e-25  Score=158.96  Aligned_cols=157  Identities=13%  Similarity=0.163  Sum_probs=89.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|++..+.....++.+..........++   .+.+|||||.          +.+..++..+
T Consensus         6 ~~Ki~vvG~~~vGKTsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~D~~G~----------e~~~~~~~~~   75 (173)
T d2fu5c1           6 LFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELDGKRIKLQIWDTAGQ----------ERFRTITTAY   75 (173)
T ss_dssp             EEEEEEECCCCC----------------CHHHHHCEEEEEEEEEETTEEEEEEEEEC-------------------CCTT
T ss_pred             EEEEEEECCCCcCHHHHHHHHHhCCCCCccCccccceEEEEEEEECCEEEEEEEEECCCc----------hhhHHHHHHh
Confidence            47999999999999999999998765555555555555444444444   5778999984          2334555666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHH---hccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANW---LGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~---~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ++.   +|++|+|+|++++.+..... ....   ....+.|+++|+||+|+....  ....++...+.....      ++
T Consensus        76 ~~~---~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~iilv~~k~D~~~~~--~~~~~~~~~~~~~~~------~~  144 (173)
T d2fu5c1          76 YRG---AMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGNKCDVNDKR--QVSKERGEKLALDYG------IK  144 (173)
T ss_dssp             TTT---CSEEEEEEETTCHHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCSCC--CSCHHHHHHHHHHHT------CE
T ss_pred             ccC---CCEEEEEEECCChhhHHHHHHHHHHhhhhccCCceEEEEEecccchhhc--ccHHHHHHHHHHhcC------CE
Confidence            666   89999999999877655431 1122   224779999999999987643  233344444444433      68


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++||++|.|++++|++|.+.+..
T Consensus       145 ~~e~Sa~~g~gv~e~f~~l~~~i~~  169 (173)
T d2fu5c1         145 FMETSAKANINVENAFFTLARDIKA  169 (173)
T ss_dssp             EEECCC---CCHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999886654

>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab18
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=7.6e-24  Score=153.84  Aligned_cols=155  Identities=23%  Similarity=0.204  Sum_probs=113.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|.+|+|||||+++|.+..+.....+..+..........+.   .+.+|||||..          .++.++..+
T Consensus         7 ~iKi~vvG~~~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~----------~~~~~~~~~   76 (177)
T d1x3sa1           7 TLKILIIGESGVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVDGNKAKLAIWDTAGQE----------RFRTLTPSY   76 (177)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECSSG----------GGCCSHHHH
T ss_pred             eeEEEEECCCCcCHHHHHHHHHhCCCCCccccceeecceeEEEEEeccccEEEEEECCCch----------hhHHHHHHH
Confidence            46999999999999999999999877777777776665554444443   68999999942          223455666


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccH-HHHHHhc----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDL-DCANWLG----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHP  190 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~-~~~~~~~----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  190 (219)
                      +..   +|++++|+|++++.+.... .....+.    ....|++++.||.|...   +.+...+..++.+...      +
T Consensus        77 ~~~---~~~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~i~~~~nk~d~~~---~~v~~~~~~~~~~~~~------~  144 (177)
T d1x3sa1          77 YRG---AQGVILVYDVTRRDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN---REVDRNEGLKFARKHS------M  144 (177)
T ss_dssp             HTT---CCEEEEEEETTCHHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS---CCSCHHHHHHHHHHTT------C
T ss_pred             Hhc---CCEEEEEEECCCccccccchhhhhhhcccccccceeeEEEeecccccc---ccccHHHHHHHHHHCC------C
Confidence            666   8999999999986665443 2222222    25689999999999754   3444555555555433      5


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHHh
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      +++++||++|.|++++|+++.+.+-
T Consensus       145 ~~~e~Sa~tg~gv~e~f~~l~~~l~  169 (177)
T d1x3sa1         145 LFIEASAKTCDGVQCAFEELVEKII  169 (177)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCCHHHHHHHHHHHHc
Confidence            8999999999999999999987654

>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: CDC42
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.1e-24  Score=157.82  Aligned_cols=158  Identities=12%  Similarity=0.100  Sum_probs=111.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      .+||+++|++|+|||||+++|++..+...+.++.+..........+  ..+.+||++|.          +.|..++..++
T Consensus         3 ~iKvvllG~~~vGKTSli~r~~~~~f~~~~~~t~~~~~~~~~~~~~~~~~l~i~D~~g~----------~~~~~~~~~~~   72 (191)
T d2ngra_           3 TIKCVVVGDGAVGKTCLLISYTTNKFPSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQ----------EDYDRLRPLSY   72 (191)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEEEETTEEEEEEEEEECCS----------GGGTTTGGGGC
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCCcCCceeeecceeEeeCCceeeeeccccccc----------hhhhhhhhhcc
Confidence            4699999999999999999999987666666666543332222211  25788999884          33455667777


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEcccccccc----------cCCCchHhHHHHHHHH
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVA----------KGRRPDENIKSFQQLI  182 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~----------~~~~~~~~~~~~~~~~  182 (219)
                      +.   +|++++|+|++++.++....  ....+.  ..+.|+++|+||+|+.+..          ...+..++..++.+.+
T Consensus        73 ~~---~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~i~lvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  149 (191)
T d2ngra_          73 PQ---TDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETAEKLARDL  149 (191)
T ss_dssp             TT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHT
T ss_pred             cc---cceeecccccchHHHHHHHHHHHHHHHhhcCCCCceEEEeccccccccchhhhhhhhcccccccHHHHHHHHHHc
Confidence            77   89999999999987765431  111111  2689999999999986432          2234444455554443


Q ss_pred             HhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          183 RENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      ..     .+++++||++|.|++++|+.+.+.+
T Consensus       150 ~~-----~~~~e~SAk~~~~V~e~f~~l~~~~  176 (191)
T d2ngra_         150 KA-----VKYVECSALTQKGLKNVFDEAILAA  176 (191)
T ss_dssp             TC-----SCEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             CC-----CeEEEEeCCCCcCHHHHHHHHHHHH
Confidence            22     5899999999999999999887754

>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Mouse (Mus musculus), ARL2 [TaxId: 10090]

Probab=99.91  E-value=3.7e-24  Score=153.68  Aligned_cols=156  Identities=17%  Similarity=0.135  Sum_probs=105.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      .+||+++|++|+|||||+++|.+. ....+.++.+..... ....+..+.++|+||.          ..+......+++.
T Consensus         2 ~~ki~ivG~~~~GKTsLi~~l~~~-~~~~~~~t~~~~~~~-~~~~~~~~~~~D~~G~----------~~~~~~~~~~~~~   69 (165)
T d1ksha_           2 ELRLLMLGLDNAGKTTILKKFNGE-DVDTISPTLGFNIKT-LEHRGFKLNIWDVGGQ----------KSLRSYWRNYFES   69 (165)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHTTC-CCSSCCCCSSEEEEE-EEETTEEEEEEEECCS----------HHHHTTGGGGCTT
T ss_pred             cEEEEEECCCCCCHHHHHHHHcCC-CCCcccceEeeeeee-ccccccceeeeecCcc----------hhhhhHHHhhhhh
Confidence            469999999999999999999987 455555555533321 1223347999999983          2233344555555


Q ss_pred             cCCccEEEEEEeCCCCCCcccH--HHHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--hcCCCCCC
Q 027757          119 RESLVGVLLLIDASVPPQKIDL--DCANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR--ENYPHHPP  191 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~--~~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  191 (219)
                         +|++++++|+++..+....  .+...+.   ..+.|+++|+||+|+.+..       ..++....+.  ......++
T Consensus        70 ---~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~-------~~~~~~~~~~~~~~~~~~~~  139 (165)
T d1ksha_          70 ---TDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFANKQDLPGAL-------SCNAIQEALELDSIRSHHWR  139 (165)
T ss_dssp             ---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSCEE
T ss_pred             ---hhcceeeeecccchhHHHHHHhhhhhhhhcccCCCceEEEEecccccccc-------CHHHHHHHHHhhhhhcCCCE
Confidence               8999999999986555432  1112222   2679999999999986532       1222222221  11223467


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++||++|.|++++++||.+.+..
T Consensus       140 ~~~~Sa~~g~gv~e~~~~l~~~i~~  164 (165)
T d1ksha_         140 IQGCSAVTGEDLLPGIDWLLDDISS  164 (165)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEEECCCCCCHHHHHHHHHHHHHc
Confidence            8999999999999999999887654

>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]

Probab=99.91  E-value=1.8e-24  Score=157.78  Aligned_cols=162  Identities=15%  Similarity=0.127  Sum_probs=108.1

Q ss_pred             CCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           35 PKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        35 ~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      .....+||+++|++|||||||+++|.+.. .....++.+...... ...+..+.++|+||....          ..++..
T Consensus        13 ~~~k~~KI~lvG~~~vGKTsLi~~l~~~~-~~~~~~t~~~~~~~~-~~~~~~~~i~D~~g~~~~----------~~~~~~   80 (182)
T d1moza_          13 GSNKELRILILGLDGAGKTTILYRLQIGE-VVTTKPTIGFNVETL-SYKNLKLNVWDLGGQTSI----------RPYWRC   80 (182)
T ss_dssp             TCSSCEEEEEEEETTSSHHHHHHHTCCSE-EEEECSSTTCCEEEE-EETTEEEEEEEEC----C----------CTTGGG
T ss_pred             CCCceEEEEEECCCCCCHHHHHHHHhcCC-CCccccccceEEEEE-eeCCEEEEEEeccccccc----------chhHHh
Confidence            44557899999999999999999999874 444445544333211 122347889999985422          223345


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH-HH-HHhcc---CCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhc--CC
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD-CA-NWLGR---NNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIREN--YP  187 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~-~~-~~~~~---~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~--~~  187 (219)
                      ++..   +|++++|+|+++..+..... .+ ..+..   .+.|+++|+||+|+.+..       ..++..+.+...  ..
T Consensus        81 ~~~~---~~~ii~v~d~~d~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~  150 (182)
T d1moza_          81 YYAD---TAAVIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLVFANKQDQPGAL-------SASEVSKELNLVELKD  150 (182)
T ss_dssp             TTTT---EEEEEEEEETTCTTTHHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTTCC-------CHHHHHHHTTTTTCCS
T ss_pred             hhcc---ceeEEEEeeecccccchhHHHHHHHHHHhhccCCcceEEEEEeecccccc-------CHHHHHHHHHHHHHhh
Confidence            5555   89999999999987765421 11 22221   568999999999986531       223333333221  12


Q ss_pred             CCCCeEEeecCCCCChHHHHHHHHHHHhhhc
Q 027757          188 HHPPWIMTSSVTGLGRDELLLHMSQLRNYWD  218 (219)
Q Consensus       188 ~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~~  218 (219)
                      ..++++++||++|.|++++++||.+.+++.+
T Consensus       151 ~~~~~~e~SA~~g~gv~e~~~~l~~~i~~~~  181 (182)
T d1moza_         151 RSWSIVASSAIKGEGITEGLDWLIDVIKEEQ  181 (182)
T ss_dssp             SCEEEEEEBGGGTBTHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence            2457899999999999999999999887653

>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rac
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=2e-24  Score=157.74  Aligned_cols=158  Identities=14%  Similarity=0.068  Sum_probs=107.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..+||+|+|++|+|||||+++|++..+...+.++.+...... ...++   .+.++|++|.          +.+..+...
T Consensus         4 ~~iKivviG~~~vGKTsli~~~~~~~f~~~~~~ti~~~~~~~-~~~~~~~~~~~~~d~~g~----------~~~~~~~~~   72 (183)
T d1mh1a_           4 QAIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDNYSAN-VMVDGKPVNLGLWDTAGQ----------EDYDRLRPL   72 (183)
T ss_dssp             EEEEEEEECSTTSSHHHHHHHHHHSSCCSSCCCCSCCEEEEE-EEETTEEEEEEEECCCCS----------GGGTTTGGG
T ss_pred             eeEEEEEECCCCCCHHHHHHHHHhCCCCcccccceeeceeee-eeccCcceEEEeeccccc----------ccchhhhhh
Confidence            357999999999999999999999877776666665443322 22233   4667787763          334455566


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccHH--HHHHhc--cCCCcEEEEEEccccccccc----------CCCchHhHHHHHH
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDLD--CANWLG--RNNIPLTFVFTKCDKMKVAK----------GRRPDENIKSFQQ  180 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~--~~~~p~iiv~nK~D~~~~~~----------~~~~~~~~~~~~~  180 (219)
                      +++.   +|++++|+|++++.++....  ....+.  ..+.|+++|+||+|+.....          ......+...+.+
T Consensus        73 ~~~~---~~~~ilv~d~~~~~sf~~i~~~~~~~~~~~~~~~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~a~  149 (183)
T d1mh1a_          73 SYPQ---TDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAK  149 (183)
T ss_dssp             GCTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHH
T ss_pred             cccc---cceeeeeeccchHHHHHHHHHHHHHHHHHhCCCCcEEEEeecccchhhhhhhhhhhhccccchhhHHHHHHHH
Confidence            7776   89999999999877765432  111111  26789999999999864321          1111122222222


Q ss_pred             HHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          181 LIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       181 ~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .+.     .++|+++||++|.|++++|+.+.+.+
T Consensus       150 ~~~-----~~~~~E~SAk~~~~V~e~F~~l~~~i  178 (183)
T d1mh1a_         150 EIG-----AVKYLECSALTQRGLKTVFDEAIRAV  178 (183)
T ss_dssp             HTT-----CSEEEECCTTTCTTHHHHHHHHHHHH
T ss_pred             HcC-----CceEEEcCCCCCcCHHHHHHHHHHHH
Confidence            221     26899999999999999999998754

>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL8A [TaxId: 9606]

Probab=99.90  E-value=8.2e-24  Score=151.78  Aligned_cols=154  Identities=15%  Similarity=0.100  Sum_probs=106.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      .+||+++|++|+|||||+++|.+..+.....++.+....  .... +..+.+||+||.          ..+...+..++.
T Consensus         2 e~ki~i~G~~~~GKTsLl~~l~~~~~~~~~~~T~~~~~~--~~~~~~~~~~i~D~~G~----------~~~~~~~~~~~~   69 (164)
T d1zd9a1           2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR--KITKGNVTIKLWDIGGQ----------PRFRSMWERYCR   69 (164)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCSEEEE--EEEETTEEEEEEEECCS----------HHHHTTHHHHHT
T ss_pred             eEEEEEECCCCCCHHHHHHHHHcCCCCCcccccceeeee--eeeeeeEEEEEeecccc----------cccccccccccc
Confidence            369999999999999999999988666555565554332  2222 337889999983          344555666776


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHH-HHH-Hhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC--CCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLD-CAN-WLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY--PHHP  190 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~-~~~-~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~  190 (219)
                      .   +|++++|+|+++..+..... .+. .+.   ..++|+++|+||+|+....       ...+..+.++...  ....
T Consensus        70 ~---~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~pi~lv~nK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~  139 (164)
T d1zd9a1          70 G---VSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGAL-------DEKELIEKMNLSAIQDREI  139 (164)
T ss_dssp             T---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSCE
T ss_pred             c---cchhhcccccccccccchhhhhhhhhhhhhcccCCcEEEEEeccccchhh-------hHHHHHHHHHHHHHHhCCC
Confidence            6   89999999999876644321 111 222   2679999999999986542       1223333332211  2245


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      +++++||++|.|++++|+||.+.+
T Consensus       140 ~~~e~Sa~~g~gv~e~~~~l~~~~  163 (164)
T d1zd9a1         140 CCYSISCKEKDNIDITLQWLIQHS  163 (164)
T ss_dssp             EEEECCTTTCTTHHHHHHHHHHTC
T ss_pred             EEEEEeCcCCcCHHHHHHHHHHcc
Confidence            789999999999999999998754

>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable tRNA modification GTPase TrmE (MnmE), G domain
species: Escherichia coli [TaxId: 562]

Probab=99.90  E-value=9.2e-24  Score=150.90  Aligned_cols=153  Identities=26%  Similarity=0.243  Sum_probs=105.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee---EEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN---HFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~---~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+|+|++. ....+...++++....   ....+..+.++|+||+...  ....+.........++
T Consensus         2 ~kI~lvG~~nvGKSsLin~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~--~~~~~~~~~~~~~~~~   78 (161)
T d2gj8a1           2 MKVVIAGRPNAGKSSLLNALAGR-EAAIVTDIAGTTRDVLREHIHIDGMPLHIIDTAGLREA--SDEVERIGIERAWQEI   78 (161)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSTTCCCSCEEEEEEETTEEEEEEECCCCSCC--SSHHHHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCC-CceEeecccccccceEeeeeeccCceeeeccccccccc--cccchhHHHHHHHHHH
Confidence            58999999999999999999997 4555566666555432   2223447899999997543  2222222223334445


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHh-c--cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeE
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWL-G--RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWI  193 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~-~--~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (219)
                      ..   +|++++++|+.+..+.......... .  ..++|+++|+||+|+.+....      ..       .  ....+++
T Consensus        79 ~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~------~~-------~--~~~~~~~  140 (161)
T d2gj8a1          79 EQ---ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG------MS-------E--VNGHALI  140 (161)
T ss_dssp             HT---CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE------EE-------E--ETTEEEE
T ss_pred             Hh---ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH------HH-------H--hCCCcEE
Confidence            55   8999999999988776554433222 2  257999999999998654211      00       0  1125899


Q ss_pred             EeecCCCCChHHHHHHHHHH
Q 027757          194 MTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       194 ~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ++||++|.|+++|+++|.+.
T Consensus       141 ~iSAk~~~gi~~L~~~l~~~  160 (161)
T d2gj8a1         141 RLSARTGEGVDVLRNHLKQS  160 (161)
T ss_dssp             ECCTTTCTTHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHhh
Confidence            99999999999999999874

>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Rab7
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.90  E-value=5.7e-24  Score=155.45  Aligned_cols=153  Identities=21%  Similarity=0.288  Sum_probs=108.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +||+++|.+|+|||||+++|++..+...+.++.+.+.........+   .+.++|++|......          .+..++
T Consensus         3 ~Kv~vvG~~~vGKSSLi~~l~~~~f~~~~~~t~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~----------~~~~~~   72 (184)
T d1vg8a_           3 LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVDDRLVTMQIWDTAGQERFQS----------LGVAFY   72 (184)
T ss_dssp             EEEEEECCTTSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESSSCEEEEEEEEECSSGGGSC----------SCCGGG
T ss_pred             EEEEEECCCCcCHHHHHHHHHhCCCCCCcCCccceeeeeeeeeeCCceEEEEeeecCCcccccc----------cccccc
Confidence            6899999999999999999998877777777777666554444333   678899999543211          112333


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc----------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG----------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~----------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                      ..   +|++++++|.++..+.....  .|+.          ..++|+++|+||+|+...   .+..++.+++....    
T Consensus        73 ~~---~~~~i~~~d~~~~~~~~~~~--~~~~~i~~~~~~~~~~~ip~ilv~nK~Dl~~~---~~~~~~~~~~~~~~----  140 (184)
T d1vg8a_          73 RG---ADCCVLVFDVTAPNTFKTLD--SWRDEFLIQASPRDPENFPFVVLGNKIDLENR---QVATKRAQAWCYSK----  140 (184)
T ss_dssp             TT---CSEEEEEEETTCHHHHHTHH--HHHHHHHHHHCCSSGGGSCEEEEEECTTSSCC---CSCHHHHHHHHHHT----
T ss_pred             cC---ccEEEEeecccchhhhhcch--hhHHHHHHHhccccccCCCEEEEEEeeccccc---chhHHHHHHHHHHh----
Confidence            33   89999999998866554431  2221          246899999999998653   23334444433321    


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                       ..++++++||++|.|++++|+++.+.+.
T Consensus       141 -~~~~~~e~Sak~~~gI~e~f~~l~~~i~  168 (184)
T d1vg8a_         141 -NNIPYFETSAKEAINVEQAFQTIARNAL  168 (184)
T ss_dssp             -TSCCEEECBTTTTBSHHHHHHHHHHHHH
T ss_pred             -cCCeEEEEcCCCCcCHHHHHHHHHHHHH
Confidence             1278999999999999999999877543

>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.90  E-value=2.3e-23  Score=151.62  Aligned_cols=160  Identities=18%  Similarity=0.192  Sum_probs=103.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeE-EeeEEE--ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQ-LINHFL--VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~-~~~~~~--~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      +.|+|+|.+|+|||||+|+|++.. .........++. ......  .+..+.++||||+.....  .+....    ..++
T Consensus         2 ~~VaivG~~nvGKSTLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~DtpG~~~~~~--~~~~~~----~~~l   74 (180)
T d1udxa2           2 ADVGLVGYPNAGKSSLLAAMTRAH-PKIAPYPFTTLSPNLGVVEVSEEERFTLADIPGIIEGAS--EGKGLG----LEFL   74 (180)
T ss_dssp             CSEEEECCGGGCHHHHHHHHCSSC-CEECCCTTCSSCCEEEEEECSSSCEEEEEECCCCCCCGG--GSCCSC----HHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHhCCC-CceeccCCCceeeeeceeeecCCCeEEEcCCCeeecCch--HHHHHH----HHHH
Confidence            469999999999999999999874 333222222222 222222  234799999999753211  111111    2233


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      .....++++++++|+.............++.     ..++|+++|+||+|+...       +..++..+.+..   ...+
T Consensus        75 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~D~~~~-------~~~~~~~~~~~~---~~~~  144 (180)
T d1udxa2          75 RHIARTRVLLYVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE-------EAVKALADALAR---EGLA  144 (180)
T ss_dssp             HHHTSSSEEEEEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH-------HHHHHHHHHHHT---TTSC
T ss_pred             HHHHhhhhhhhhcccccccccchhhhhhhhhccccccchhhhhhhhhhhhhhhH-------HHHHHHHHHHHh---cCCe
Confidence            3344479999999987643222222222322     246899999999999764       344555555543   3468


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ++++||++|.|+++|++.|.+.++.
T Consensus       145 ~~~iSA~tg~gid~L~~~i~~~l~~  169 (180)
T d1udxa2         145 VLPVSALTGAGLPALKEALHALVRS  169 (180)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence            9999999999999999999988764

>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF6 [TaxId: 9606]

Probab=99.90  E-value=8.7e-24  Score=152.95  Aligned_cols=155  Identities=13%  Similarity=0.108  Sum_probs=104.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ..+||+++|++|+|||||+++|+... .....++.+.... ........+.++|+||..          .++..+..+++
T Consensus        11 k~~kIvlvG~~~vGKTSli~rl~~~~-~~~~~~t~~~~~~-~~~~~~~~~~i~D~~g~~----------~~~~~~~~~~~   78 (173)
T d1e0sa_          11 KEMRILMLGLDAAGKTTILYKLKLGQ-SVTTIPTVGFNVE-TVTYKNVKFNVWDVGGQD----------KIRPLWRHYYT   78 (173)
T ss_dssp             CCEEEEEEEETTSSHHHHHHHTTCCC-CEEEEEETTEEEE-EEEETTEEEEEEEESCCG----------GGHHHHGGGTT
T ss_pred             CeEEEEEECCCCCCHHHHHHHHhcCC-CCCccceeeeeEE-EeeccceeeEEecCCCcc----------hhhhHHHhhhc
Confidence            36899999999999999999999864 3333333333221 111223378899999843          33566677777


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH--hcCCCCC
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR--ENYPHHP  190 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  190 (219)
                      .   +|++|+|+|+++..+.....  +...+.   ..+.|+++|+||+|+.+..       ...+....+.  ......+
T Consensus        79 ~---~~~ii~v~D~s~~~~~~~~~~~l~~~~~~~~~~~~piiiv~NK~Dl~~~~-------~~~~i~~~~~~~~~~~~~~  148 (173)
T d1e0sa_          79 G---TQGLIFVVDCADRDRIDEARQELHRIINDREMRDAIILIFANKQDLPDAM-------KPHEIQEKLGLTRIRDRNW  148 (173)
T ss_dssp             T---CCEEEEEEETTCGGGHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCCSSCE
T ss_pred             c---cceEEEEEecccchhHHHHHHHHHHHhhhcccccceeeeeeecccccccc-------cHHHHHHHHHHHHHHhCCC
Confidence            7   89999999999876654321  112222   2579999999999987542       1222333322  2222345


Q ss_pred             CeEEeecCCCCChHHHHHHHHHHH
Q 027757          191 PWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       191 ~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .++++||++|.|++|+++||.+.+
T Consensus       149 ~~~e~SA~tg~gv~e~~~~l~~~~  172 (173)
T d1e0sa_         149 YVQPSCATSGDGLYEGLTWLTSNY  172 (173)
T ss_dssp             EEEECBTTTTBTHHHHHHHHHHHC
T ss_pred             EEEEeeCCCCcCHHHHHHHHHHhc
Confidence            789999999999999999998765

>d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor SelB, N-terminal domain
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.90  E-value=5.3e-24  Score=154.97  Aligned_cols=161  Identities=24%  Similarity=0.252  Sum_probs=106.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCccccccc-----CCCCeeEEe---eEEEecCeEEEEeCCCCCCCCCCcchhhhHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTS-----KKPGKTQLI---NHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSS  110 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-----~~~~~t~~~---~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~  110 (219)
                      .++|+++|.+|||||||+|+|++........     ...+.+...   .....+..+.++|+||.          .   .
T Consensus         5 ~inIaiiG~~naGKSTL~n~L~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~g~----------~---~   71 (179)
T d1wb1a4           5 NINLGIFGHIDHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLENYRITLVDAPGH----------A---D   71 (179)
T ss_dssp             EEEEEEEECTTSSHHHHHHHHHTTC--------------------CCCEEEETTEEEEECCCSSH----------H---H
T ss_pred             CEEEEEEeCCCCcHHHHHHHHHHhcCceecccccceeeeeeeccccccccccCCccccccccccc----------c---c
Confidence            4589999999999999999999753111111     111222111   11222336778888773          2   2


Q ss_pred             HHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-cC-CC
Q 027757          111 FTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE-NY-PH  188 (219)
Q Consensus       111 ~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-~~-~~  188 (219)
                      +.....+....+|++++|+|+.++...++.+...++...++|+++|+||+|+...+..    .......+.+.. .. ..
T Consensus        72 ~~~~~~~~l~~~d~~ilv~d~~~g~~~~~~~~~~~~~~~~~p~iiv~NKiD~~~~~~~----~~~~~~~~~~~~~~~~~~  147 (179)
T d1wb1a4          72 LIRAVVSAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGTEEI----KRTEMIMKSILQSTHNLK  147 (179)
T ss_dssp             HHHHHHHHTTSCCEEEEEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCHHHH----HHHHHHHHHHHHHSSSGG
T ss_pred             cccchhhhhhhccccccccccccccchhhhhhhhhhhhcCCcceeccccccccCHHHH----HHHHHHHHHHHHHhhcCC
Confidence            3333344455589999999999998888888888888899999999999999865311    112223333222 11 22


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ..+++++||++|.|+++|+++|.+.+..
T Consensus       148 ~~~iv~iSA~~g~gi~eL~~~I~~~l~~  175 (179)
T d1wb1a4         148 NSSIIPISAKTGFGVDELKNLIITTLNN  175 (179)
T ss_dssp             GCCEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred             CCeEEEEEccCCcCHHHHHHHHHhcCCc
Confidence            4689999999999999999999887654

>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: RhoE (RND3)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=1.7e-23  Score=152.26  Aligned_cols=158  Identities=12%  Similarity=0.074  Sum_probs=110.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      +.||+++|.+|+|||||+++|+...+...+.++.+....... ..++   .+.+||++|..          .+......+
T Consensus         2 ~~KivliG~~~vGKTsli~r~~~~~f~~~~~~t~~~~~~~~~-~~~~~~~~~~i~D~~g~~----------~~~~~~~~~   70 (179)
T d1m7ba_           2 KCKIVVVGDSQCGKTALLHVFAKDCFPENYVPTVFENYTASF-EIDTQRIELSLWDTSGSP----------YYDNVRPLS   70 (179)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHSCCCSSCCCCSEEEEEEEE-ECSSCEEEEEEEEECCSG----------GGTTTGGGG
T ss_pred             ceEEEEECCCCcCHHHHHHHHHhCCCCCccCCceeecccccc-cccceEEeeccccccccc----------cccccccch
Confidence            368999999999999999999998776666665554333332 2232   57789998843          222333455


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-H-HHHhc--cCCCcEEEEEEccccccc----------ccCCCchHhHHHHHHH
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-C-ANWLG--RNNIPLTFVFTKCDKMKV----------AKGRRPDENIKSFQQL  181 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~-~~~~~--~~~~p~iiv~nK~D~~~~----------~~~~~~~~~~~~~~~~  181 (219)
                      ++.   +|++|+|+|++++.++.... . ...+.  ..+.|+++|+||+|+...          ..+.+..++...+.+.
T Consensus        71 ~~~---~~~~ilv~d~~~~~Sf~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~~~~~~~~~~~~~~~V~~~e~~~~a~~  147 (179)
T d1m7ba_          71 YPD---SDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQ  147 (179)
T ss_dssp             CTT---CSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHH
T ss_pred             hhh---hhhhheeeecccCCCHHHHHHHHHHHHhccCCcceEEEEEecccccccchhhHHHhhhhcCcchHHHHHHHHHH
Confidence            655   89999999999887755421 1 11111  268999999999998642          2234555566666665


Q ss_pred             HHhcCCCCCCeEEeecCCCC-ChHHHHHHHHHHHh
Q 027757          182 IRENYPHHPPWIMTSSVTGL-GRDELLLHMSQLRN  215 (219)
Q Consensus       182 ~~~~~~~~~~~~~~Sa~~~~-~v~el~~~l~~~~~  215 (219)
                      .+.     .+|+++||++|. |++++|+.+.+.+-
T Consensus       148 ~~~-----~~y~E~SAk~~~n~i~~~F~~~~~~~l  177 (179)
T d1m7ba_         148 IGA-----ATYIECSALQSENSVRDIFHVATLACV  177 (179)
T ss_dssp             HTC-----SEEEECBTTTBHHHHHHHHHHHHHHHH
T ss_pred             hCC-----CeEEEEeCCCCCcCHHHHHHHHHHHHh
Confidence            543     589999999998 59999999887653

>d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngB
species: Escherichia coli [TaxId: 562]

Probab=99.89  E-value=1.7e-22  Score=147.29  Aligned_cols=187  Identities=34%  Similarity=0.510  Sum_probs=118.2

Q ss_pred             eeeccCCCCCCCCCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcc
Q 027757           24 FVKSSGRAKDCPKDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDV  103 (219)
Q Consensus        24 ~~~~~~~~~~~~~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~  103 (219)
                      |+.++...++.|....++|+++|.+|+|||||+|+|++............+...............+++.+.........
T Consensus         1 ~~~~~~~~~~~p~~~~~~I~lvG~~NvGKSSL~n~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (188)
T d1puia_           1 FVMSAPDIRHLPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDLPGYGYAEVPEE   80 (188)
T ss_dssp             CEEEESSGGGSSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEECCCCC------C
T ss_pred             CeeCCCChhHCCCccCCEEEEECCCCCCHHHHHHHHhCCCceEeecccccceeeccceecccccceeeeecccccchhhh
Confidence            45677778888888999999999999999999999999743333333333333334444444444555544332222222


Q ss_pred             hhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH
Q 027757          104 TRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR  183 (219)
Q Consensus       104 ~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~  183 (219)
                      ...........+......++.++.+.+...............+.....++++++||+|+.+....   ....+.+.+.+.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~k~D~~~~~~~---~~~~~~~~~~l~  157 (188)
T d1puia_          81 MKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLASGAR---KAQLNMVREAVL  157 (188)
T ss_dssp             CHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCHHHH---HHHHHHHHHHHG
T ss_pred             hhhhhhhhhhhhhhhhhheeEEEEeecccccchhHHHHHHHHhhhccccccchhhhhhccCHHHH---HHHHHHHHHHHH
Confidence            23333334444444555567888888888877776667777777789999999999998765321   122333344443


Q ss_pred             hcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          184 ENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       184 ~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      .. ....+++++||++|.|+++|++.|.+.+
T Consensus       158 ~~-~~~~~~i~vSA~~g~Gid~L~~~i~~~~  187 (188)
T d1puia_         158 AF-NGDVQVETFSSLKKQGVDKLRQKLDTWF  187 (188)
T ss_dssp             GG-CSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred             hh-CCCCcEEEEeCCCCCCHHHHHHHHHHHh
Confidence            33 3346899999999999999999988764

>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Centaurin gamma 1, G domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.3e-22  Score=146.86  Aligned_cols=152  Identities=17%  Similarity=0.168  Sum_probs=107.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecC---eEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNK---SWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~---~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      .+||+++|++|+|||||+++|++..+ ....++.+.+.. .....++   .+.+|||+|..          .     ..|
T Consensus         5 ~~ki~vlG~~~vGKTsLi~~~~~~~f-~~~~~t~~~~~~-~~i~v~~~~~~l~i~Dt~g~~----------~-----~~~   67 (175)
T d2bmja1           5 ELRLGVLGDARSGKSSLIHRFLTGSY-QVLEKTESEQYK-KEMLVDGQTHLVLIREEAGAP----------D-----AKF   67 (175)
T ss_dssp             EEEEEEECCTTTTHHHHHHHHHHSCC-CCCCCSSCEEEE-EEEEETTEEEEEEEEECSSCC----------C-----HHH
T ss_pred             cEEEEEECCCCCCHHHHHHHHHhCCC-CCcCCccceeEE-EEeecCceEEEEEEeeccccc----------c-----ccc
Confidence            58999999999999999999999854 333333333332 2233333   57889999842          1     135


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHH-HHHHhc------cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLD-CANWLG------RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPH  188 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~-~~~~~~------~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (219)
                      ++.   +|++|+|+|++++.++.... ...++.      ..+.|+++|+||.|+.....+.+..++.+.+.....     
T Consensus        68 ~~~---ad~~ilVfd~~~~~Sf~~~~~~~~~i~~~~~~~~~~~pi~lV~~k~d~d~~~~~~v~~~~~~~~~~~~~-----  139 (175)
T d2bmja1          68 SGW---ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDARARALCADMK-----  139 (175)
T ss_dssp             HHH---CSEEEEEEETTCHHHHHHHHHHHHHHHHHCC--CCCCEEEEEEECTTCCSSSCCCSCHHHHHHHHHTST-----
T ss_pred             ccc---cceeEEEeecccchhhhhhHHHHHHHHHHhhcccCCccEEEEeeecCcchhhhcchhHHHHHHHHHHhC-----
Confidence            666   89999999999987765532 223332      256799999999998776666666666655543322     


Q ss_pred             CCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          189 HPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       189 ~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      .++++++||+++.|++++|..+.+.+.
T Consensus       140 ~~~~~e~SAk~~~~v~~~F~~l~~~i~  166 (175)
T d2bmja1         140 RCSYYETCATYGLNVDRVFQEVAQKVV  166 (175)
T ss_dssp             TEEEEEEBTTTTBTHHHHHHHHHHHHH
T ss_pred             CCeEEEeCCCCCcCHHHHHHHHHHHHH
Confidence            268999999999999999998887543

>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor IF2/eIF5b, N-terminal (G) domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.89  E-value=1.4e-23  Score=158.24  Aligned_cols=164  Identities=19%  Similarity=0.232  Sum_probs=109.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE---------------------EEecCeEEEEeCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH---------------------FLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~---------------------~~~~~~~~liDtpg~~~   97 (219)
                      .|.|+|+|.+++|||||+|+|++.. .. .....+++.....                     ...+.++.++||||+..
T Consensus         5 ~p~IaIiGh~d~GKSTL~~~L~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iDtPGh~~   82 (227)
T d1g7sa4           5 SPIVSVLGHVDHGKTTLLDHIRGSA-VA-SREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEA   82 (227)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHHH-HS-CC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSC
T ss_pred             CCEEEEEeCCCccHHHHHHHHHhhc-ch-heecCceeeeccccccccccccccccccccceeecccccccccccccceec
Confidence            4669999999999999999999853 11 1111111111100                     01123689999999753


Q ss_pred             CCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchH----
Q 027757           98 AKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDE----  173 (219)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~----  173 (219)
                      .....             ......+|++|+|+|+.++....+.+.+.++...++|+++|+||+|+.+.........    
T Consensus        83 f~~~~-------------~~~~~~~D~~ilVvda~~g~~~~~~~~~~~~~~~~~p~iivlNK~D~~~~~~~~~~~~~~~~  149 (227)
T d1g7sa4          83 FTTLR-------------KRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHGWRVHEGRPFMET  149 (227)
T ss_dssp             CTTSB-------------CSSSBSCSEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGSTTCCCCTTCCHHHH
T ss_pred             ccccc-------------hhcccccceEEEEEecccCcccchhHHHHHhhcCCCeEEEEEECccCCCchhhhhhHHHHHh
Confidence            32211             1234458999999999999999999999999999999999999999876543221111    


Q ss_pred             --------------hHHHHHHHHHhc------------CCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          174 --------------NIKSFQQLIREN------------YPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       174 --------------~~~~~~~~~~~~------------~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                                    ...+....+...            +....+++++||++|.|+++|++.|....+++
T Consensus       150 ~~~~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~pvSa~~G~gid~Ll~~l~~l~~~~  219 (227)
T d1g7sa4         150 FSKQDIQVQQKLDTKVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY  219 (227)
T ss_dssp             HTTSCHHHHHHHHHHHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccCCCeEEEeeCCCCCCHHHHHHHHHHHHHHH
Confidence                          111111111111            12235789999999999999999998887664

>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Obg GTP-binding protein middle domain
species: Bacillus subtilis [TaxId: 1423]

Probab=99.88  E-value=1.6e-22  Score=147.71  Aligned_cols=159  Identities=21%  Similarity=0.171  Sum_probs=100.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe--eEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHH
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI--NHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGY  115 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~--~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~  115 (219)
                      ..|+|+|.+|||||||+|+|++.. .. ....+++|...  .....  +..+.++||||+.....  .+...+..+....
T Consensus         2 ~~VaiiG~~nvGKSSLin~L~~~~-~~-~~~~~~~T~~~~~~~~~~~~~~~~~~~DtpG~~~~~~--~~~~~~~~~l~~~   77 (185)
T d1lnza2           2 ADVGLVGFPSVGKSTLLSVVSSAK-PK-IADYHFTTLVPNLGMVETDDGRSFVMADLPGLIEGAH--QGVGLGHQFLRHI   77 (185)
T ss_dssp             CCEEEESSTTSSHHHHHHHSEEEC-CE-ESSTTSSCCCCCEEEEECSSSCEEEEEEHHHHHHHTT--CTTTTHHHHHHHH
T ss_pred             CeEEEECCCCCCHHHHHHHHhCCC-Cc-eecCCCceEeeeeceeEecCCcEEEEecCCCcccCch--HHHHHHHHHHHHH
Confidence            579999999999999999999974 33 33444444332  22222  33689999999632111  1122222333322


Q ss_pred             hhccCCccEEEEEEeCCCCCCcccHHHHH------Hhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcC
Q 027757          116 FLNRESLVGVLLLIDASVPPQKIDLDCAN------WLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENY  186 (219)
Q Consensus       116 ~~~~~~~d~vi~v~d~~~~~~~~~~~~~~------~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~  186 (219)
                       ..   ++.++++++..............      ...   ..++|+++|+||+|+.+..      ...+.    +...+
T Consensus        78 -~~---~~~i~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kp~ivv~NK~Dl~~~~------~~~~~----~~~~~  143 (185)
T d1lnza2          78 -ER---TRVIVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEAA------ENLEA----FKEKL  143 (185)
T ss_dssp             -HH---CCEEEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTHH------HHHHH----HHHHC
T ss_pred             -HH---hhhhhheeeecccccchhhhhhhhhhhccchhhhhccCCcchhhccccchHhHH------HHHHH----HHHHh
Confidence             22   68888888877544433221111      111   1468999999999987531      22233    33334


Q ss_pred             CCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          187 PHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       187 ~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                      ....+++++||++|.|+++|+++|.+.++.
T Consensus       144 ~~~~~v~~iSA~~g~Gi~~L~~~i~~~L~~  173 (185)
T d1lnza2         144 TDDYPVFPISAVTREGLRELLFEVANQLEN  173 (185)
T ss_dssp             CSCCCBCCCSSCCSSTTHHHHHHHHHHHTS
T ss_pred             ccCCcEEEEECCCCCCHHHHHHHHHHhhhh
Confidence            455789999999999999999999988754

>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.87  E-value=2.4e-21  Score=143.66  Aligned_cols=163  Identities=18%  Similarity=0.266  Sum_probs=108.6

Q ss_pred             CCC-CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCC--------CC-eeEEe------------------------e
Q 027757           34 CPK-DDRPEFAILGRSNVGKSSLINALVRKKELALTSKK--------PG-KTQLI------------------------N   79 (219)
Q Consensus        34 ~~~-~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~--------~~-~t~~~------------------------~   79 (219)
                      |++ ...++|+++|..++|||||+++|++.. .......        .+ .....                        .
T Consensus         2 ~~~~~p~ini~iiGhVd~GKSTL~~~L~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (205)
T d2qn6a3           2 WPKVQPEVNIGVVGHVDHGKTTLVQAITGIW-TSKHSEELKRGMTIKLGYAETNIGVCESCKKPEAYVTEPSCKSCGSDD   80 (205)
T ss_dssp             CCCCCCCEEEEEECSTTSSHHHHHHHHHSCC-C--------------CEEEEEEEEECTTSCTTTTEESSSCCGGGTCCS
T ss_pred             CCCCCCCeEEEEEEccCCcHHHHHHHHHhhh-chhhHHHHHhhcccccchhhhhhhhhhhhhhhheeeecccceeeeeec
Confidence            344 334699999999999999999999741 1100000        00 00000                        0


Q ss_pred             EEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-CcccHHHHHHhccCCC-cEEEEE
Q 027757           80 HFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-QKIDLDCANWLGRNNI-PLTFVF  157 (219)
Q Consensus        80 ~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-~~~~~~~~~~~~~~~~-p~iiv~  157 (219)
                      .......+.++||||+             ..+.....++...+|++|+|+|+.++. ..+..+.+..+...++ |+++++
T Consensus        81 ~~~~~r~~~iiD~PGH-------------~df~~~~~~~~~~ad~ailvVda~~gi~~~~t~e~~~~~~~~~i~~iIV~v  147 (205)
T d2qn6a3          81 EPKFLRRISFIDAPGH-------------EVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQ  147 (205)
T ss_dssp             CCEEEEEEEEEECSCH-------------HHHHHHHHHTSSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             cccceEEEEEeccchH-------------HHHHhhhhcceeccccccccccccccccchhHHHHHHHHHHcCCceeeecc
Confidence            0011235889999996             356666777788899999999999975 4454566666666665 788999


Q ss_pred             EcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          158 TKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       158 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      ||+|+.+....   ........+.+.......++++++||++|.|+++|++.|.+.
T Consensus       148 NK~Dl~~~~~~---~~~~~~~~~~l~~~~~~~~p~ipiSA~~g~nI~~L~e~i~~~  200 (205)
T d2qn6a3         148 NKVDVVSKEEA---LSQYRQIKQFTKGTWAENVPIIPVSALHKINIDSLIEGIEEY  200 (205)
T ss_dssp             ECGGGSCHHHH---HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             ccCCCccchHH---HHHHHHHHHHhccccCCCCeEEEEeCCCCCChHHHHHHHHhh
Confidence            99999865321   122223333344445556899999999999999999988765

>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARF1 [TaxId: 9606]

Probab=99.87  E-value=1.3e-21  Score=139.07  Aligned_cols=152  Identities=16%  Similarity=0.122  Sum_probs=100.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR  119 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~  119 (219)
                      .||+++|++|+|||||+++|++..+............  ........+.++|+||..          .+......++.. 
T Consensus         1 ikivlvG~~~vGKSsLi~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~g~~----------~~~~~~~~~~~~-   67 (160)
T d1r8sa_           1 MRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVE--TVEYKNISFTVWDVGGQD----------KIRPLWRHYFQN-   67 (160)
T ss_dssp             CEEEEECSTTSSHHHHHHHHHHHCSSCCCCCSSCCEE--EEECSSCEEEEEECCCCG----------GGHHHHHHHTTT-
T ss_pred             CEEEEECCCCCCHHHHHHHHhcCCCCccccceeeEEE--EEeeeeEEEEEecCCCcc----------cchhhhhhhhcc-
Confidence            4899999999999999999998754333222222111  111223478899999843          234556666666 


Q ss_pred             CCccEEEEEEeCCCCCCcccHH--HHHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCCCCCe
Q 027757          120 ESLVGVLLLIDASVPPQKIDLD--CANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPHHPPW  192 (219)
Q Consensus       120 ~~~d~vi~v~d~~~~~~~~~~~--~~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~  192 (219)
                        ++++++++|..+..+.....  ..+.+.   ....|+++++||+|+.+..       ...+.......  .....+++
T Consensus        68 --~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~~k~d~~~~~-------~~~~i~~~~~~~~~~~~~~~~  138 (160)
T d1r8sa_          68 --TQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAM-------NAAEITDKLGLHSLRHRNWYI  138 (160)
T ss_dssp             --CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHTTGGGCSSCCEEE
T ss_pred             --ceeEEEEEEecChHHHHHHHHHHHHHHHhhcccCceEEEEeecccccccc-------cHHHHHHHHHHHHHhhCCCEE
Confidence              89999999999876554321  111211   2578999999999987642       11222222211  11234679


Q ss_pred             EEeecCCCCChHHHHHHHHHH
Q 027757          193 IMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       193 ~~~Sa~~~~~v~el~~~l~~~  213 (219)
                      +++||++|.|++++|+||.+.
T Consensus       139 ~~~SAktg~gi~e~~~~l~~~  159 (160)
T d1r8sa_         139 QATCATSGDGLYEGLDWLSNQ  159 (160)
T ss_dssp             EECBTTTTBTHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHhc
Confidence            999999999999999999874

>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain
species: Archaeon Pyrococcus abyssi [TaxId: 29292]

Probab=99.86  E-value=1.1e-21  Score=144.47  Aligned_cols=159  Identities=18%  Similarity=0.227  Sum_probs=104.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-cccccCCCCeeEEee--------------------------EEEecCeEEEEe
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE-LALTSKKPGKTQLIN--------------------------HFLVNKSWYIVD   91 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~-~~~~~~~~~~t~~~~--------------------------~~~~~~~~~liD   91 (219)
                      .++|+++|..++|||||+|+|++... ........+.+....                          ......++.++|
T Consensus         5 ~inIaiiGhvd~GKSTL~~~L~g~~~~~~~~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iD   84 (195)
T d1kk1a3           5 EVNIGMVGHVDHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFID   84 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEE
T ss_pred             cEEEEEEeccCCcHHHHHHHHHhhhhhhhHHHHHcCcccccchhhhhhhccchhhhccceeeeeeeeeeecCceeEeeec
Confidence            45899999999999999999997420 111111111111100                          001123588999


Q ss_pred             CCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCc-ccHHHHHHhccCCC-cEEEEEEcccccccccCC
Q 027757           92 LPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQK-IDLDCANWLGRNNI-PLTFVFTKCDKMKVAKGR  169 (219)
Q Consensus        92 tpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~  169 (219)
                      |||+             ..+.....++...+|++++|+|+.++... +..+.+..+...++ ++++++||+|+.+.... 
T Consensus        85 tPGh-------------~~f~~~~~~~~~~~d~~ilvvda~~g~~~~~t~e~~~~~~~~~~~~iiv~inK~D~~d~~~~-  150 (195)
T d1kk1a3          85 APGH-------------EALMTTMLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKEKA-  150 (195)
T ss_dssp             CSSH-------------HHHHHHHHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHHHH-
T ss_pred             cchh-------------hhhhHHhhcccccccccccccchhhhhhhhhhHHHHHHHHHhcCccceeeeecccchhhHHH-
Confidence            9994             34556666666779999999999987533 33455555555444 47889999999865311 


Q ss_pred             CchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHH
Q 027757          170 RPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQL  213 (219)
Q Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~  213 (219)
                        ....+...+.+.......++++++||++|.|+++|++.+.+.
T Consensus       151 --~~~~~~~~~~~~~~~~~~~~iIpiSA~~G~ni~~Ll~~I~~~  192 (195)
T d1kk1a3         151 --LENYRQIKEFIEGTVAENAPIIPISALHGANIDVLVKAIEDF  192 (195)
T ss_dssp             --HHHHHHHHHHHTTSTTTTCCEEECBTTTTBSHHHHHHHHHHH
T ss_pred             --HHHHHHHHHHhccccCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence              122333344444444556899999999999999999988764

>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL5A [TaxId: 9606]

Probab=99.85  E-value=5e-21  Score=138.46  Aligned_cols=159  Identities=18%  Similarity=0.158  Sum_probs=102.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ...+||+++|.+|||||||++++.+..+ ....+..+... ......+..+.++|+++.....          .....++
T Consensus        13 ~k~~kI~vvG~~~~GKSsLi~rl~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~   80 (177)
T d1zj6a1          13 HQEHKVIIVGLDNAGKTTILYQFSMNEV-VHTSPTIGSNV-EEIVINNTRFLMWDIGGQESLR----------SSWNTYY   80 (177)
T ss_dssp             TSCEEEEEEESTTSSHHHHHHHHHTTSC-EEEECCSCSSC-EEEEETTEEEEEEECCC----C----------GGGHHHH
T ss_pred             CCeEEEEEECCCCCCHHHHHHHHhcCCC-CccccccceeE-EEEeecceEEEEeccccccccc----------cchhhhh
Confidence            4468999999999999999999999753 33333333222 2222344578899998853221          1223344


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHHH--HHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCC
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDCA--NWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPP  191 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~~--~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (219)
                      ..   ++++++++|.++..+.......  ...   .....|+++|+||+|+.....    ..+..+... +.......++
T Consensus        81 ~~---~~~~i~v~d~~d~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~~~----~~~i~~~~~-~~~~~~~~~~  152 (177)
T d1zj6a1          81 TN---TEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMT----VAEISQFLK-LTSIKDHQWH  152 (177)
T ss_dssp             TT---CCEEEEEEETTCTTTHHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTTCCC----HHHHHHHHT-GGGCCSSCEE
T ss_pred             cc---ceeeeeecccccccchhhhhhhhhhhhhcccccceEEEEEEEcccccccCc----HHHHHHHHH-HHhhHhcCCE
Confidence            44   7999999999987776542211  111   126899999999999865421    122222221 1122234568


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ++++||++|.|++|+++||.+.++
T Consensus       153 ~~~~Sa~tg~Gi~e~~~~L~~~lk  176 (177)
T d1zj6a1         153 IQACCALTGEGLCQGLEWMMSRLK  176 (177)
T ss_dssp             EEECBTTTTBTHHHHHHHHHHHHC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHhC
Confidence            999999999999999999998764

>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Cow (Bos taurus), mitochondrial [TaxId: 9913]

Probab=99.84  E-value=1.4e-20  Score=138.02  Aligned_cols=159  Identities=18%  Similarity=0.246  Sum_probs=109.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc--------------ccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK--------------ELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAP  101 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~--------------~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~  101 (219)
                      .++|+++|..++|||||+++|++..              .........+.|.+....   +.+..+.++||||+      
T Consensus         3 ~ini~iiGHvd~GKSTL~~~l~~~~~~~~~~~~~~~~~~~~~~~Er~rgiTi~~~~~~~~~~~~~~~~iDtPGh------   76 (196)
T d1d2ea3           3 HVNVGTIGHVDHGKTTLTAAITKILAEGGGAKFKKYEEIDNAPEERARGITINAAHVEYSTAARHYAHTDCPGH------   76 (196)
T ss_dssp             EEEEEEESSTTSSHHHHHHHHHHHHHHTTSBCCCCHHHHHSCCEEEETTEEEECEEEEEECSSCEEEEEECSSH------
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHHHHcCcchhhhhhhcccchhhcCCCccCCcceEEEEeceeeEEeecCcch------
Confidence            3689999999999999999998621              011122333455544322   23457999999995      


Q ss_pred             cchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCC-cEEEEEEcccccccccCCCchHhHH-HHH
Q 027757          102 DVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNI-PLTFVFTKCDKMKVAKGRRPDENIK-SFQ  179 (219)
Q Consensus       102 ~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~-p~iiv~nK~D~~~~~~~~~~~~~~~-~~~  179 (219)
                             ..+.....+....+|++|+|+|+.++...++.+.+..+...++ |+++++||+|+...+.+   -+.++ +..
T Consensus        77 -------~~f~~~~~~~~~~aD~allVVda~~G~~~QT~~~~~~a~~~~~~~iIv~iNK~D~~~~~~~---~~~i~~~i~  146 (196)
T d1d2ea3          77 -------ADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKADAVQDSEM---VELVELEIR  146 (196)
T ss_dssp             -------HHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCCEEEEEECGGGCSCHHH---HHHHHHHHH
T ss_pred             -------HHHHHHHHHHHhhcCeEEEEEEcCCCCchhHHHHHHHHHHhcCCcEEEEEecccccccHHH---HHHHHHHHH
Confidence                   3456667777888999999999999999888888888777554 78889999998753211   11122 222


Q ss_pred             HHHHhc--CCCCCCeEEeecCCC----------CChHHHHHHHHHH
Q 027757          180 QLIREN--YPHHPPWIMTSSVTG----------LGRDELLLHMSQL  213 (219)
Q Consensus       180 ~~~~~~--~~~~~~~~~~Sa~~~----------~~v~el~~~l~~~  213 (219)
                      ..+...  .....|++++|+++|          .++++|++.|.+.
T Consensus       147 ~~l~~~~~~~~~~pii~iSa~~g~~~~~~~~~~~~~~~Lldai~~~  192 (196)
T d1d2ea3         147 ELLTEFGYKGEETPIIVGSALCALEQRDPELGLKSVQKLLDAVDTY  192 (196)
T ss_dssp             HHHHHTTSCTTTSCEEECCHHHHHTTCCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhCCCcccCEEEEEEccccccccCcccccCCHHHHHHHHHhh
Confidence            222221  223578999999998          5888888887654

>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: ADP-ribosylation factor
species: Human (Homo sapiens), ARL1 [TaxId: 9606]

Probab=99.82  E-value=1.9e-19  Score=128.61  Aligned_cols=157  Identities=17%  Similarity=0.117  Sum_probs=101.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      .+||+++|.+|||||||+++|++..+ ....++.+.... .....+..+.++|.++....          ......++..
T Consensus         5 e~kI~ivG~~~vGKSSLi~~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~   72 (169)
T d1upta_           5 EMRILILGLDGAGKTTILYRLQVGEV-VTTIPTIGFNVE-TVTYKNLKFQVWDLGGLTSI----------RPYWRCYYSN   72 (169)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHSSC-CCCCCCSSEEEE-EEEETTEEEEEEEECCCGGG----------GGGGGGGCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhCCCC-cceecccceeee-eeccCceEEEEeeccccccc----------cccchhhhhh
Confidence            57999999999999999999999753 333333332221 11222346788888875321          1112222233


Q ss_pred             cCCccEEEEEEeCCCCCCcccHHH--HHHh---ccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh--cCCCCCC
Q 027757          119 RESLVGVLLLIDASVPPQKIDLDC--ANWL---GRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE--NYPHHPP  191 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~~--~~~~---~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  191 (219)
                         ++++++++|+.+..+......  ....   .....|+++++||+|+....       ...+.......  .....++
T Consensus        73 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iv~nk~Dl~~~~-------~~~~i~~~~~~~~~~~~~~~  142 (169)
T d1upta_          73 ---TDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKAILVVFANKQDMEQAM-------TSSEMANSLGLPALKDRKWQ  142 (169)
T ss_dssp             ---CSEEEEEEETTCCTTHHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTCC-------CHHHHHHHHTGGGCTTSCEE
T ss_pred             ---hhhhhhhhhhhhcchhhhccchhhhhhhhhccccceEEEEEeeccccccc-------cHHHHHHHHHHHHHhcCCCE
Confidence               789999999987666544321  1111   12678999999999997642       12223332221  2234578


Q ss_pred             eEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          192 WIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       192 ~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                      ++++||++|.|+++++++|.+.++..
T Consensus       143 ~~~~SA~~g~gv~e~~~~l~~~l~~k  168 (169)
T d1upta_         143 IFKTSATKGTGLDEAMEWLVETLKSR  168 (169)
T ss_dssp             EEECCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             EEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999887654

>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.82  E-value=6.6e-20  Score=130.42  Aligned_cols=153  Identities=23%  Similarity=0.262  Sum_probs=98.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccC
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRE  120 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~  120 (219)
                      ||+++|++|+|||||+|+|.+.. ...+.++.+.+.... ...+....++|++|....          ......++..  
T Consensus         2 KI~liG~~nvGKSSLln~l~~~~-~~~~~~t~~~~~~~~-~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~--   67 (166)
T d2qtvb1           2 KLLFLGLDNAGKTTLLHMLKNDR-LATLQPTWHPTSEEL-AIGNIKFTTFDLGGHIQA----------RRLWKDYFPE--   67 (166)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSC-CCCCCCCCSCEEEEE-CCTTCCEEEEECCCSGGG----------GGGGGGGCTT--
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-CCeeeceeeEeEEEe-ccCCeeEEEEeeccchhh----------hhhHhhhhhh--
Confidence            89999999999999999999974 555666555444321 122457889999885311          1222344444  


Q ss_pred             CccEEEEEEeCCCCCCcccHHHH-H----HhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHH----h--cCCCC
Q 027757          121 SLVGVLLLIDASVPPQKIDLDCA-N----WLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIR----E--NYPHH  189 (219)
Q Consensus       121 ~~d~vi~v~d~~~~~~~~~~~~~-~----~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~  189 (219)
                       ++++++++|.++.......... .    .....+.|+++++||.|+....    ...++.+......    .  .....
T Consensus        68 -~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~~~k~d~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~  142 (166)
T d2qtvb1          68 -VNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFVILGNKIDAPNAV----SEAELRSALGLLNTTGSQRIEGQRP  142 (166)
T ss_dssp             -CSEEEEEEETTCGGGHHHHHHHHHHHHTCTTTTTCCEEEEEECTTSSSCC----CHHHHHHHHTCSSCCC---CCSSCC
T ss_pred             -eeeeeeeccccchhhhhhhhHHHHhhhhhhccCCceEEEEeccccccccC----CHHHHHHHhhhhhhhHHHhhcccCC
Confidence             7999999999986554432111 1    1113778999999999986531    1222222211100    0  01123


Q ss_pred             CCeEEeecCCCCChHHHHHHHHH
Q 027757          190 PPWIMTSSVTGLGRDELLLHMSQ  212 (219)
Q Consensus       190 ~~~~~~Sa~~~~~v~el~~~l~~  212 (219)
                      ++++++||++|.|++|+|+||.+
T Consensus       143 ~~~~~~SA~tg~Gv~e~~~~l~~  165 (166)
T d2qtvb1         143 VEVFMCSVVMRNGYLEAFQWLSQ  165 (166)
T ss_dssp             EEEEEEBTTTTBSHHHHHHHHTT
T ss_pred             CEEEEeeCCCCCCHHHHHHHHhC
Confidence            46899999999999999999975

>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTPase Era, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.80  E-value=8.3e-19  Score=126.82  Aligned_cols=162  Identities=22%  Similarity=0.242  Sum_probs=104.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEe-eEEE-e-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLI-NHFL-V-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~-~~~~-~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      .|+++|.+|+|||||+|+|++.+ .........++... .... . ...+..+|++|.....    ..............
T Consensus         7 ~I~iiG~~nvGKSSLin~L~~~~-~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~   81 (179)
T d1egaa1           7 FIAIVGRPNVGKSTLLNKLLGQK-ISITSRKAQTTRHRIVGIHTEGAYQAIYVDTPGLHMEE----KRAINRLMNKAASS   81 (179)
T ss_dssp             EEEEECSSSSSHHHHHHHHHTCS-EEECCCCSSCCSSCEEEEEEETTEEEEEESSSSCCHHH----HHHHHHHHTCCTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhCCC-ceeeccCCCceEEEEEeeeecCCceeEeecCCCceecc----hhhhhhhhhhcccc
Confidence            48999999999999999999974 45454444444322 2222 2 2256778988864211    11111111111112


Q ss_pred             ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeec
Q 027757          118 NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSS  197 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa  197 (219)
                      ....+|+++++.|..+.. .........+.+...|.++|+||+|+...      ........+.+...++. .+++++||
T Consensus        82 ~~~~~~~~l~~~d~~~~~-~~~~~~~~~l~~~~~~~i~v~~k~d~~~~------~~~~~~~~~~~~~~~~~-~~~~~vSA  153 (179)
T d1egaa1          82 SIGDVELVIFVVEGTRWT-PDDEMVLNKLREGKAPVILAVNKVDNVQE------KADLLPHLQFLASQMNF-LDIVPISA  153 (179)
T ss_dssp             CCCCEEEEEEEEETTCCC-HHHHHHHHHHHSSSSCEEEEEESTTTCCC------HHHHHHHHHHHHTTSCC-SEEEECCT
T ss_pred             chhhcceeEEEEecCccc-hhHHHHHHHhhhccCceeeeeeeeeccch------hhhhhhHhhhhhhhcCC-CCEEEEeC
Confidence            223478888999887543 33345566666778899999999998754      23444555555554443 58999999


Q ss_pred             CCCCChHHHHHHHHHHHh
Q 027757          198 VTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       198 ~~~~~v~el~~~l~~~~~  215 (219)
                      ++|.|+++|+++|.+.+.
T Consensus       154 ~~g~gi~~L~~~i~~~lp  171 (179)
T d1egaa1         154 ETGLNVDTIAAIVRKHLP  171 (179)
T ss_dssp             TTTTTHHHHHHHHHTTCC
T ss_pred             cCCCCHHHHHHHHHHhCC
Confidence            999999999999987653

>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.79  E-value=5e-19  Score=130.70  Aligned_cols=141  Identities=18%  Similarity=0.263  Sum_probs=95.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc----------ccccccC-----CCCeeEE---eeEEEecCeEEEEeCCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK----------ELALTSK-----KPGKTQL---INHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~----------~~~~~~~-----~~~~t~~---~~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      +++|+++|.+++|||||+++|+...          .....+.     ..+.|.+   ....+.+.++.++||||+.    
T Consensus         3 ~ini~iiGhvd~GKSTL~~~Ll~~~g~~~~~~~~~~~~~~d~~~eE~~rgiTi~~~~~~~~~~~~~i~iiDtPGh~----   78 (204)
T d2c78a3           3 HVNVGTIGHVDHGKTTLTAALTYVAAAENPNVEVKDYGDIDKAPEERARGITINTAHVEYETAKRHYSHVDCPGHA----   78 (204)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHHHSCTTSCCCCHHHHSCSHHHHHHTCCCSCEEEEEECSSCEEEEEECCCSG----
T ss_pred             CeEEEEEeCCCCcHHHHHHHHHHHhhhccCCcchhhhhhcccchHHhcCCeEEEeeEEEEEeCCeEEEEEeCCCch----
Confidence            4689999999999999999997431          0000001     1133332   2333445689999999974    


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEcccccccccCCCchHhHHHHH
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCDKMKVAKGRRPDENIKSFQ  179 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D~~~~~~~~~~~~~~~~~~  179 (219)
                               .+.....++...+|++|+|+|+.++...++.+.+..+...++| +++++||+|+.+.+      +.+++..
T Consensus        79 ---------df~~~~~~~~~~aD~avlVvda~~Gv~~qt~~~~~~~~~~gi~~iiv~iNK~D~~~~~------~~~~~~~  143 (204)
T d2c78a3          79 ---------DYIKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDP------ELLDLVE  143 (204)
T ss_dssp             ---------GGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHHHHHTTCCCEEEEEECGGGCCCH------HHHHHHH
T ss_pred             ---------hhHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEEecccCCCH------HHHHHHH
Confidence                     2334555666779999999999999999998989999888987 67789999987532      2233333


Q ss_pred             HH----HHhc-C-CCCCCeEEeecC
Q 027757          180 QL----IREN-Y-PHHPPWIMTSSV  198 (219)
Q Consensus       180 ~~----~~~~-~-~~~~~~~~~Sa~  198 (219)
                      +.    +... + ....+++..|+.
T Consensus       144 ~~i~~~l~~~~~~~~~i~~i~~sa~  168 (204)
T d2c78a3         144 MEVRDLLNQYEFPGDEVPVIRGSAL  168 (204)
T ss_dssp             HHHHHHHHHTTSCTTTSCEEECCHH
T ss_pred             HHHHHHHHhcCCCcccceeeeeech
Confidence            22    2221 1 234678888875

>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: SAR1
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.79  E-value=3.4e-19  Score=129.24  Aligned_cols=159  Identities=19%  Similarity=0.241  Sum_probs=94.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHh
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYF  116 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~  116 (219)
                      ....||+++|++|||||||+++|++.. .....+..+.+.... ...+..+..+|+++......          ....++
T Consensus        11 ~k~~kI~lvG~~~vGKTsLl~~l~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------~~~~~~   78 (186)
T d1f6ba_          11 KKTGKLVFLGLDNAGKTTLLHMLKDDR-LGQHVPTLHPTSEEL-TIAGMTFTTFDLGGHIQARR----------VWKNYL   78 (186)
T ss_dssp             TCCEEEEEEEETTSSHHHHHHHHSCC-------CCCCCSCEEE-EETTEEEEEEEECC----CC----------GGGGGG
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHhCCC-CcceecccccceeEE-Eecccccccccccchhhhhh----------HHhhhh
Confidence            346799999999999999999999974 333333333332211 12233677888887542211          112333


Q ss_pred             hccCCccEEEEEEeCCCCCCcccHHH--HHHhc---cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh-------
Q 027757          117 LNRESLVGVLLLIDASVPPQKIDLDC--ANWLG---RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE-------  184 (219)
Q Consensus       117 ~~~~~~d~vi~v~d~~~~~~~~~~~~--~~~~~---~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~-------  184 (219)
                      ..   .+++++++|+++.........  .....   ..+.|+++++||.|+....    ....+.+.......       
T Consensus        79 ~~---~~~~~~~~d~~d~~~~~~~~~~~~~~~~~~~~~~~~~li~~~K~D~~~~~----~~~~i~~~~~~~~~~~~~~~~  151 (186)
T d1f6ba_          79 PA---INGIVFLVDCADHERLLESKEELDSLMTDETIANVPILILGNKIDRPEAI----SEERLREMFGLYGQTTGKGSV  151 (186)
T ss_dssp             GG---CSEEEEEEETTCGGGHHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTTCC----CHHHHHHHHTCTTTCCCSSCC
T ss_pred             cc---cceeeeeeeccCccchHHHHHHHHHhhcccccCCCceEEEEeccCccccC----CHHHHHHHHhhcccchhhhhh
Confidence            33   789999999988655443211  11111   2679999999999986531    12222222211100       


Q ss_pred             ----cCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          185 ----NYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       185 ----~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                          ......+++++||++|.|++|+|+||.+.+
T Consensus       152 ~~~~~~~~~~~~~~~SA~tg~Gi~e~~~~l~~~i  185 (186)
T d1f6ba_         152 SLKELNARPLEVFMCSVLKRQGYGEGFRWMAQYI  185 (186)
T ss_dssp             CTTTCCSCCEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred             hHHHhhcCCCEEEEEeCCCCCCHHHHHHHHHHhh
Confidence                011124689999999999999999998753

>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=99.78  E-value=8.4e-19  Score=130.85  Aligned_cols=150  Identities=19%  Similarity=0.158  Sum_probs=99.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc--ccc-------cccCC----------------------CCeeEE---eeEEE
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK--ELA-------LTSKK----------------------PGKTQL---INHFL   82 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~--~~~-------~~~~~----------------------~~~t~~---~~~~~   82 (219)
                      ...++|+++|..++|||||+++|+...  ...       .....                      .+.+..   .....
T Consensus         7 ~~~~~i~viGHVd~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~g~~~~~~~~~~~~d~~~~e~~~g~ti~~~~~~~~~   86 (222)
T d1zunb3           7 KEMLRFLTCGNVDDGKSTLIGRLLHDSKMIYEDHLEAITRDSKKSGTTGDDVDLALLVDGLQAEREQGITIDVAYRYFST   86 (222)
T ss_dssp             CEEEEEEEECCTTSSHHHHHHHHHHHTTCC------------------CCC--CHHHHHHHHC-----CCCCCEEEEEEC
T ss_pred             CCcceEEEEcCCCCCHHHHHHHHHHHcCCcchHHHHHHHHHHHhcCccccceeeeeccccchhhhccCCCceeeEEEEec
Confidence            456889999999999999999997421  000       00000                      011111   11122


Q ss_pred             ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCc-EEEEEEccc
Q 027757           83 VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIP-LTFVFTKCD  161 (219)
Q Consensus        83 ~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p-~iiv~nK~D  161 (219)
                      .+..+.++||||+.             .+.....++...+|++|+|+|+.++...+..+.+..+...+++ +++++||+|
T Consensus        87 ~~~~~~iiD~PGH~-------------dfv~~~~~g~~~aD~ailVvda~~G~~~Qt~e~~~~~~~~gv~~iiv~vNK~D  153 (222)
T d1zunb3          87 AKRKFIIADTPGHE-------------QYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMD  153 (222)
T ss_dssp             SSEEEEEEECCCSG-------------GGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEEECTT
T ss_pred             cceEEEEEeccchh-------------hhhhhhccccccCceEEEEeccccCcccchHHHHHHHHHcCCCEEEEEEEccc
Confidence            34479999999973             3345555566669999999999999999988888888888865 899999999


Q ss_pred             ccccccCCCchHhHHHHHHH----HHhcCC--CCCCeEEeecCCCCChH
Q 027757          162 KMKVAKGRRPDENIKSFQQL----IRENYP--HHPPWIMTSSVTGLGRD  204 (219)
Q Consensus       162 ~~~~~~~~~~~~~~~~~~~~----~~~~~~--~~~~~~~~Sa~~~~~v~  204 (219)
                      +.+..     ++..++..+.    +.....  ..++++++||.+|.|+-
T Consensus       154 ~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~~i~~IPiSA~~G~ni~  197 (222)
T d1zunb3         154 LNGFD-----ERVFESIKADYLKFAEGIAFKPTTMAFVPMSALKGDNVV  197 (222)
T ss_dssp             TTTSC-----HHHHHHHHHHHHHHHHTTTCCCSEEEEEECCTTTCTTTS
T ss_pred             ccccc-----ceehhhhHHHHhhhhHhhccCCCceEEEEEEcccCccCC
Confidence            97642     2223333222    222211  23578999999999883

>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.77  E-value=2.9e-18  Score=126.94  Aligned_cols=160  Identities=16%  Similarity=0.185  Sum_probs=92.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe--cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           41 EFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV--NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~--~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      .|+|+|++|+|||||+|+|++..+ ....++.+.+.....+..  ...+.++|+||..         ......+..++..
T Consensus         2 ~V~ivG~~~~GKTsLl~~l~~~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~d~~g~~---------~~~~~~~~~~~~~   71 (207)
T d2fh5b1           2 AVLFVGLCDSGKTLLFVRLLTGQY-RDTQTSITDSSAIYKVNNNRGNSLTLIDLPGHE---------SLRFQLLDRFKSS   71 (207)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHSCC-CCBCCCCSCEEEEEECSSTTCCEEEEEECCCCH---------HHHHHHHHHHGGG
T ss_pred             EEEEECCCCCCHHHHHHHHHcCCC-CcccCCeeEEEEEEEEeeeeeeeeeeeeccccc---------cccchhhhhhhhh
Confidence            699999999999999999999743 334444444433222211  2368899999842         1112345566666


Q ss_pred             cCCccEEEEEEeCCCCCCcccH--H-HHHHhc-----cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh------
Q 027757          119 RESLVGVLLLIDASVPPQKIDL--D-CANWLG-----RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE------  184 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~--~-~~~~~~-----~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~------  184 (219)
                         ++++++|+|+++..+....  + +..++.     ..++|+++|+||+|+......+...+.++........      
T Consensus        72 ---~~~~i~v~D~~d~~~~~~~~~~~l~~~l~~~~~~~~~~pilvv~NK~Dl~~a~~~~~i~~~l~~e~~~~~~~~~~~~  148 (207)
T d2fh5b1          72 ---ARAVVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAKSAKLIQQQLEKELNTLRVTRSAAP  148 (207)
T ss_dssp             ---EEEEEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHCC---
T ss_pred             ---ccccceEEEcccccccHHHHHHHHHHHHHhHHHhhcCCcEEEEEECcccCCCCCHHHHHHHHHHHhhhhhhcccccc
Confidence               8999999999874432111  1 112221     2568999999999997643221111111111111111      


Q ss_pred             -----------------------cCCCCCCeEEeecCCCCC------hHHHHHHHHHH
Q 027757          185 -----------------------NYPHHPPWIMTSSVTGLG------RDELLLHMSQL  213 (219)
Q Consensus       185 -----------------------~~~~~~~~~~~Sa~~~~~------v~el~~~l~~~  213 (219)
                                             .......++++|++.+.+      ++++-+||.++
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~S~~~~~~~~~~~~i~~~~~wl~~~  206 (207)
T d2fh5b1         149 STLDSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI  206 (207)
T ss_dssp             ---------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred             ceeehhhhhhhhhcccchhhhHHhccCCcEEEEeeecCCCcccccccHHHHHHHHHHh
Confidence                                   011123578899999876      88888888765

>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-inducible GTPase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.76  E-value=2.2e-18  Score=139.47  Aligned_cols=168  Identities=20%  Similarity=0.155  Sum_probs=104.6

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccc---ccccCCCCeeEEeeEEEec--CeEEEEeCCCCCCCCCCcchhhhHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKEL---ALTSKKPGKTQLINHFLVN--KSWYIVDLPGYGFAKAPDVTRMDWSSFT  112 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~---~~~~~~~~~t~~~~~~~~~--~~~~liDtpg~~~~~~~~~~~~~~~~~~  112 (219)
                      .+++|+|+|.+|+|||||+|+|+|....   ....+..++|.+...+...  ..+++|||||+.......   ..|  +.
T Consensus        55 ~~l~Iai~G~~n~GKSSLiNaL~G~~~~~~~~~~~g~~~tT~~~~~~~~~~~~~~~l~DtPG~~~~~~~~---~~~--~~  129 (400)
T d1tq4a_          55 SVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWDLPGIGSTNFPP---DTY--LE  129 (400)
T ss_dssp             CCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC----CCCEEEECSSCTTEEEEECCCGGGSSCCH---HHH--HH
T ss_pred             CCcEEEEECCCCCCHHHHHHHHhCCCcCCCccCCCCCCCCceeeeeeeccCCCeEEEEeCCCcccccccH---HHH--HH
Confidence            3689999999999999999999986321   1222334455555444433  369999999986433221   111  11


Q ss_pred             HHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccC------CCchHhHHHH----HHHH
Q 027757          113 KGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKG------RRPDENIKSF----QQLI  182 (219)
Q Consensus       113 ~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~------~~~~~~~~~~----~~~~  182 (219)
                      ...   ...+|.+|++.|  ...+..+.++.+++...++|+++|+||+|.......      ...+..++++    ...+
T Consensus       130 ~~~---~~~~d~~l~~~~--~~~~~~d~~l~~~l~~~~k~~~~V~nK~D~~~~~~~~~~~~~~~~e~~l~~ir~~~~~~l  204 (400)
T d1tq4a_         130 KMK---FYEYDFFIIISA--TRFKKNDIDIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTF  204 (400)
T ss_dssp             HTT---GGGCSEEEEEES--SCCCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             Hhh---hhcceEEEEecC--CCCCHHHHHHHHHHHHcCCCEEEEEeCcccccchhhhcccccccHHHHHHHHHHHHHHHH
Confidence            111   223677777765  346677788889999999999999999996422111      0111122222    3333


Q ss_pred             HhcCCCCCCeEEeecCC--CCChHHHHHHHHHHHh
Q 027757          183 RENYPHHPPWIMTSSVT--GLGRDELLLHMSQLRN  215 (219)
Q Consensus       183 ~~~~~~~~~~~~~Sa~~--~~~v~el~~~l~~~~~  215 (219)
                      ........++|.+|...  ..|+++|.+.+.+.+.
T Consensus       205 ~~~~~~~~~vflvS~~~~~~~d~~~L~~~l~~~L~  239 (400)
T d1tq4a_         205 RENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLP  239 (400)
T ss_dssp             HHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSC
T ss_pred             HHcCCCCCCEEEecCCcccccCHHHHHHHHHHHhH
Confidence            44444556889998765  4589999999877643

>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.74  E-value=3.7e-17  Score=124.96  Aligned_cols=113  Identities=16%  Similarity=0.147  Sum_probs=80.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-cc---cc------------cCCCCeeEE---eeEEEecCeEEEEeCCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE-LA---LT------------SKKPGKTQL---INHFLVNKSWYIVDLPGYGFAK   99 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~-~~---~~------------~~~~~~t~~---~~~~~~~~~~~liDtpg~~~~~   99 (219)
                      ..+|+|+|..|+|||||+++++...- ..   ..            ....+.+..   ....+.+.++.++||||+....
T Consensus         6 iRni~i~gh~~~GKTtL~e~ll~~~g~~~~~g~v~~~~~~~D~~~~E~~r~~si~~~~~~~~~~~~~~n~iDtPG~~dF~   85 (276)
T d2bv3a2           6 LRNIGIAAHIDAGKTTTTERILYYTGRIHKIGEVHEGAATMDFMEQERERGITITAAVTTCFWKDHRINIIDAPGHVDFT   85 (276)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHTSSCC-------------------CCCCCCCSEEEEEETTEEEEEECCCSSSSCS
T ss_pred             ceEEEEEeCCCCCHHHHHHHHHHhcCccccccceecCceEEeccHHHHhcCCccccceeeeccCCeEEEEecCCchhhhH
Confidence            34699999999999999999974310 00   00            011111111   2223345589999999986543


Q ss_pred             CCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757          100 APDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus       100 ~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ...          ...++.   +|++|+|+|+.++...+...++++..+.++|.++++||+|...
T Consensus        86 ~e~----------~~~l~~---~D~avlVvda~~Gv~~~T~~~w~~a~~~~lP~i~fINKmDr~~  137 (276)
T d2bv3a2          86 IEV----------ERSMRV---LDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTG  137 (276)
T ss_dssp             TTH----------HHHHHH---CCEEEEEEETTTSSCHHHHHHHHHHHTTTCCEEEEEECTTSTT
T ss_pred             HHH----------HHHHHh---hhheEEeccccCCcchhHHHHHHHHHHcCCCEEEEEecccccc
Confidence            222          122233   8999999999999999999999999999999999999999864

>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.73  E-value=1.4e-18  Score=127.03  Aligned_cols=158  Identities=10%  Similarity=0.073  Sum_probs=100.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhc
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLN  118 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~  118 (219)
                      .+||+++|..|+|||||+++|....+.     +.+.. ..........+.+|||.|          ++.|..++..|++.
T Consensus         2 e~KivllG~~~vGKTsl~~r~~~~~~~-----t~~~~-~~~~~~~~~~~~i~D~~G----------q~~~~~~~~~~~~~   65 (195)
T d1svsa1           2 EVKLLLLGAGESGKSTIVKQMKIIHEA-----GTGIV-ETHFTFKDLHFKMFDVGG----------QRSERKKWIHCFEG   65 (195)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHHHHSC-----CCSEE-EEEEEETTEEEEEEEECC----------SGGGGGGGGGGCTT
T ss_pred             ceEEEEECCCCCCHHHHHHHHhhCCCC-----CccEE-EEEEEeeeeeeeeecccc----------ccccccchhhcccC
Confidence            469999999999999999999875332     12211 111111233677888877          55667788888888


Q ss_pred             cCCccEEEEEEeCCCCCCcccH--------HHHH-H---h---ccCCCcEEEEEEcccccccccC--------------C
Q 027757          119 RESLVGVLLLIDASVPPQKIDL--------DCAN-W---L---GRNNIPLTFVFTKCDKMKVAKG--------------R  169 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~--------~~~~-~---~---~~~~~p~iiv~nK~D~~~~~~~--------------~  169 (219)
                         ++++++++|.++..+....        +... |   +   ...+.|+++++||+|+......              .
T Consensus        66 ---~~~~i~v~d~~~~~~~~~~~~~~~~~~e~~~~~~~i~~~~~~~~~~~~lv~Nk~d~~~~~~~~~~~~~~~~~~~~~~  142 (195)
T d1svsa1          66 ---VTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTDTSIILFLNKKDLFEEKIKKSPLTICYPEYAGSN  142 (195)
T ss_dssp             ---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTSCGGGTCTTCCSCS
T ss_pred             ---CceeeeEEeecccchHHHHhhhhHHHHHHHHHHHHHhcccccCCCCEEEEeccchhhhhhccchHHHHHhhhhcCcc
Confidence               9999999999876554321        1111 1   1   1267899999999997432211              1


Q ss_pred             CchHhHHHHHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          170 RPDENIKSFQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       170 ~~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                      ...+........+....    ...+.++++||+++.|++++|+.+.+.+-
T Consensus       143 ~~~~~~~~~~~~f~~~~~~~~~~~~~~~~tSA~~~~nv~~~F~~v~~~il  192 (195)
T d1svsa1         143 TYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVII  192 (195)
T ss_dssp             SHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhcccCCCcceeEEEEeECCHhHHHHHHHHHHHHH
Confidence            11111122222332211    12345778999999999999999987653

>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor G (EF-G), N-terminal (G) domain
species: Thermus thermophilus, EF-G-2 [TaxId: 274]

Probab=99.72  E-value=4.2e-17  Score=124.39  Aligned_cols=111  Identities=23%  Similarity=0.240  Sum_probs=78.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCccc-c---ccc-C-----------CCCeeE---EeeEEEecCeEEEEeCCCCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKEL-A---LTS-K-----------KPGKTQ---LINHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~-~---~~~-~-----------~~~~t~---~~~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      .+|+|+|..++|||||+++|+...-. .   ... .           ..+.+.   .....+.+.++.++||||+..   
T Consensus         3 RNv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~~g~~~~D~~~~E~~r~~ti~~~~~~~~~~~~~~n~iDtPGh~d---   79 (267)
T d2dy1a2           3 RTVALVGHAGSGKTTLTEALLYKTGAKERRGRVEEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDAPGYGD---   79 (267)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGGGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEECCCSGG---
T ss_pred             eEEEEEcCCCCcHHHHHHHHHHHcCCchhhccchhccccccchHHHHHhCCeEEeecccccccccceeEEccCchhh---
Confidence            36999999999999999999743100 0   000 0           011111   122334455899999999742   


Q ss_pred             CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757          101 PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus       101 ~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                                +..........+|++|+|+|+.++...+..+.++.+.+.++|.++++||+|..
T Consensus        80 ----------F~~e~~~al~~~D~avlvvda~~Gv~~~t~~~~~~~~~~~~p~~i~iNk~D~~  132 (267)
T d2dy1a2          80 ----------FVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDKG  132 (267)
T ss_dssp             ----------GHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHHHHHHHTTCCEEEEEECGGGC
T ss_pred             ----------hhhhhhhhhcccCceEEEeeccCCccchhHHHHHhhhhccccccccccccccc
Confidence                      22222233333899999999999999999999999999999999999999974

>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Signal recognition particle receptor beta-subunit
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.71  E-value=1.2e-17  Score=123.54  Aligned_cols=114  Identities=19%  Similarity=0.254  Sum_probs=71.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE---EecCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF---LVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~---~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..|+|+|+|++|||||||+|+|++..+.+      +++......   ..+..+.++||||....      ..   .+...
T Consensus         2 ~~p~V~lvG~~n~GKTSLln~l~~~~~~~------~tt~~~~~~~~~~~~~~~~l~D~~g~~~~------~~---~~~~~   66 (209)
T d1nrjb_           2 YQPSIIIAGPQNSGKTSLLTLLTTDSVRP------TVVSQEPLSAADYDGSGVTLVDFPGHVKL------RY---KLSDY   66 (209)
T ss_dssp             CCCEEEEECSTTSSHHHHHHHHHHSSCCC------BCCCSSCEEETTGGGSSCEEEECCCCGGG------TH---HHHHH
T ss_pred             CCCEEEEECCCCCCHHHHHHHHhCCCCCC------eEEecceEEEEEeCCeEEEEEecccccch------hh---HHHHH
Confidence            46899999999999999999999974322      222222211   12447899999996421      11   11222


Q ss_pred             HhhccCCccEEEEEEeCCCCCCcccH---------HHHHHhccCCCcEEEEEEcccccccc
Q 027757          115 YFLNRESLVGVLLLIDASVPPQKIDL---------DCANWLGRNNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~~~~~~~---------~~~~~~~~~~~p~iiv~nK~D~~~~~  166 (219)
                      +......++.+++++|+.........         .........++|+++|+||+|+....
T Consensus        67 ~~~~~~~~~~~i~~vd~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~piiiv~NK~D~~~~~  127 (209)
T d1nrjb_          67 LKTRAKFVKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR  127 (209)
T ss_dssp             HHHHGGGEEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred             HHHHhhhccccceEEEEecccccHHHHHHHHHHHHHHHHHHHhccCCeEEEEEeecccccC
Confidence            22223337899999998864332211         11223334789999999999987643

>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=1.8e-17  Score=121.54  Aligned_cols=160  Identities=13%  Similarity=0.087  Sum_probs=100.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE-ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL-VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~-~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      .+||+++|..|||||||+++|....+  .+.|+.|...  .... ....+.++|++|.          ..+...+..+++
T Consensus         2 e~Kiv~lG~~~vGKTsll~r~~~~~~--~~~pTiG~~~--~~~~~~~~~~~~~d~~g~----------~~~~~~~~~~~~   67 (200)
T d2bcjq2           2 ELKLLLLGTGESGKSTFIKQMRIIHG--SGVPTTGIIE--YPFDLQSVIFRMVDVGGQ----------RSERRKWIHCFE   67 (200)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHTS--SCCCCCSCEE--EEEECSSCEEEEEECCCS----------TTGGGGGGGGCS
T ss_pred             eeEEEEECCCCCCHHHHHHHHhCCCC--CCCceeeEEE--EEEeccceeeeecccccc----------cccccccccccc
Confidence            47999999999999999999987643  3445555332  1222 2336788888873          334455667777


Q ss_pred             ccCCccEEEEEEeCCCCCCccc--------HHHH----HHhc---cCCCcEEEEEEcccccccccCCC------------
Q 027757          118 NRESLVGVLLLIDASVPPQKID--------LDCA----NWLG---RNNIPLTFVFTKCDKMKVAKGRR------------  170 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~--------~~~~----~~~~---~~~~p~iiv~nK~D~~~~~~~~~------------  170 (219)
                      .   ++++++++|.++..+...        .+..    ..+.   ..+.|+++++||.|+........            
T Consensus        68 ~---~~~~i~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~l~~~~~~~~~~~~v~NK~Dl~~~~~~~~~~~~~~~~~~~~  144 (200)
T d2bcjq2          68 N---VTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKDLLEEKIMYSHLVDYFPEYDGP  144 (200)
T ss_dssp             S---CSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHHCGGGSSSEEEEEEECHHHHHHHTTTSCHHHHSTTCCSC
T ss_pred             c---cceeeEeeeccchhhhhhhhccccchHHHHHHHHHHHhhhhccCccEEEecchhhhhhhcccchHHHHhcccccCC
Confidence            7   899999999987543211        1111    1111   26799999999999754322111            


Q ss_pred             --chHhHHHH-HHHHHhcC---CCCCCeEEeecCCCCChHHHHHHHHHHHh
Q 027757          171 --PDENIKSF-QQLIRENY---PHHPPWIMTSSVTGLGRDELLLHMSQLRN  215 (219)
Q Consensus       171 --~~~~~~~~-~~~~~~~~---~~~~~~~~~Sa~~~~~v~el~~~l~~~~~  215 (219)
                        .......+ ...+....   ...+.++++||++|.|++++|+.+.+..-
T Consensus       145 ~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~tSAk~~~ni~~vF~~i~~~I~  195 (200)
T d2bcjq2         145 QRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTIL  195 (200)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSCTTSCEEEEECCTTCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHhcccCCCceEEEEeEEEcCHhHHHHHHHHHHHHH
Confidence              11111121 22222211   12344789999999999999999977654

>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.70  E-value=2.1e-17  Score=121.36  Aligned_cols=158  Identities=14%  Similarity=0.161  Sum_probs=96.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      .+||+++|.+|||||||+++|.   +.....|+.|....  .+.. ...+.++|++|...          +...+..+++
T Consensus         2 ~iKivllG~~~vGKTsll~r~~---f~~~~~pTiG~~~~--~~~~~~~~~~~~D~~gq~~----------~~~~~~~~~~   66 (200)
T d1zcba2           2 LVKILLLGAGESGKSTFLKQMR---IIHGQDPTKGIHEY--DFEIKNVPFKMVDVGGQRS----------ERKRWFECFD   66 (200)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHH---HHHSCCCCSSEEEE--EEEETTEEEEEEEECC-----------------CTTSCT
T ss_pred             eEEEEEECCCCCCHHHHHHHHh---cCCCCCCeeeeEEE--EEeeeeeeeeeecccceee----------eccccccccc
Confidence            4799999999999999999993   45556666664322  2222 33788999998532          2334445555


Q ss_pred             ccCCccEEEEEEeCCCCCCccc--------HHHHHH----hc---cCCCcEEEEEEcccccccccCC-------------
Q 027757          118 NRESLVGVLLLIDASVPPQKID--------LDCANW----LG---RNNIPLTFVFTKCDKMKVAKGR-------------  169 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~~--------~~~~~~----~~---~~~~p~iiv~nK~D~~~~~~~~-------------  169 (219)
                      .   ++++++++|.++......        .+...+    +.   ..+.|+++++||+|+.......             
T Consensus        67 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~f~~~~~~  143 (200)
T d1zcba2          67 S---VTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTDLLEEKVQVVSIKDYFLEFEGD  143 (200)
T ss_dssp             T---CCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHHHHHHHTTTCCGGGTCTTCCSC
T ss_pred             c---cceeEEEEEcCCcceeeeecccchhhhHHHHHHHHHhhChhhcCceEEEEeccchhhhhhccccHHHHhCccccCC
Confidence            5   899999999998655421        111111    11   2689999999999976432110             


Q ss_pred             -CchHhHHH-HHHHHHhcC----CCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          170 -RPDENIKS-FQQLIRENY----PHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       170 -~~~~~~~~-~~~~~~~~~----~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                       ...+...+ +.+.+....    ...+.++++||+++.|++++|+.+.+..
T Consensus       144 ~~~~~~~~~~~~~~f~~~~~~~~~~~iy~~~TsA~d~~ni~~vf~~v~d~i  194 (200)
T d1zcba2         144 PHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTI  194 (200)
T ss_dssp             TTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHhccCCCCCceEEEEeeeeCcHHHHHHHHHHHHHH
Confidence             11112222 222222211    1134466899999999999999987754

>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.66  E-value=1.3e-16  Score=120.17  Aligned_cols=147  Identities=18%  Similarity=0.184  Sum_probs=97.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc--c---------------------------cccccCCCCeeEE---eeEEEecCe
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK--E---------------------------LALTSKKPGKTQL---INHFLVNKS   86 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~--~---------------------------~~~~~~~~~~t~~---~~~~~~~~~   86 (219)
                      +++|+++|..++|||||+.+|+...  .                           ........+.|..   ....+.+.+
T Consensus         6 ~iNi~iiGHvD~GKsTl~~~ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~Er~rGiTi~~~~~~~~~~~~~   85 (239)
T d1f60a3           6 HINVVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAAELGKGSFKYAWVLDKLKAERERGITIDIALWKFETPKYQ   85 (239)
T ss_dssp             EEEEEEEECTTSCHHHHHHHHHHHHSCSSHHHHHHHHHHGGGGSSSCCCHHHHHHHHHHHHHTTCCCSCSCEEEECSSEE
T ss_pred             ccEEEEEeCCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHHhcCCccceeeecccchhhhcceeccccceeEeccCCEE
Confidence            4689999999999999999996320  0                           0000112233332   223334558


Q ss_pred             EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCC-------CCcccHHHHHHhccCCCc-EEEEEE
Q 027757           87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVP-------PQKIDLDCANWLGRNNIP-LTFVFT  158 (219)
Q Consensus        87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~-------~~~~~~~~~~~~~~~~~p-~iiv~n  158 (219)
                      +.++||||+.             .+.....++...+|++|+|+|+.++       ...+..+.+..+...++| +++++|
T Consensus        86 i~iiDtPGH~-------------df~~~~~~g~~~~D~ailvvda~~G~~e~g~~~~~QT~eh~~~~~~~gv~~iiv~iN  152 (239)
T d1f60a3          86 VTVIDAPGHR-------------DFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVN  152 (239)
T ss_dssp             EEEEECCCCT-------------THHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTTCCEEEEEEE
T ss_pred             EEEEECCCcH-------------HHHHHHHHHHHHhCEEEEEEECCCCccccccCchHhHHHHHHHHHHcCCCeEEEEEE
Confidence            9999999973             4566777788889999999999875       234556667777777877 778999


Q ss_pred             cccccccccCCCchHhHHHHHHH----HHhcC--CCCCCeEEeecCCCCCh
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQL----IRENY--PHHPPWIMTSSVTGLGR  203 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~Sa~~~~~v  203 (219)
                      |+|+.+..     .+.+++..+.    +....  ...++++++|+..|.|+
T Consensus       153 KmD~~~~d-----~~~~~~~~~el~~~l~~~~~~~~~i~~ipiSa~~G~ni  198 (239)
T d1f60a3         153 KMDSVKWD-----ESRFQEIVKETSNFIKKVGYNPKTVPFVPISGWNGDNM  198 (239)
T ss_dssp             CGGGGTTC-----HHHHHHHHHHHHHHHHHHTCCGGGCCEEECCTTTCBTT
T ss_pred             CCCCCCCC-----HHHHHHHHHHHHHHHHhcCCCCCcEEEEEEEccCCCcc
Confidence            99987642     1223332222    22211  12467899999999886

>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Eukaryotic peptide chain release factor ERF2, G domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.65  E-value=2.2e-17  Score=124.96  Aligned_cols=154  Identities=17%  Similarity=0.175  Sum_probs=89.0

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCc--cc---------------------------ccccCCCCeeEEe---eEEEecC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKK--EL---------------------------ALTSKKPGKTQLI---NHFLVNK   85 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~--~~---------------------------~~~~~~~~~t~~~---~~~~~~~   85 (219)
                      ..+.|+++|..++|||||+.+|+...  ..                           .......+.+...   ...+.+.
T Consensus        23 ~~iNi~iiGHVD~GKSTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~  102 (245)
T d1r5ba3          23 EHVNIVFIGHVDAGKSTLGGNILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEEREKGKTVEVGRAYFETEHR  102 (245)
T ss_dssp             EEEEEEEEECGGGTHHHHHHHHHHHTTSSCHHHHHHHHHHTCC----------------------------CCEEECSSE
T ss_pred             CceEEEEEeeCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCCccchhhhhhhccccccccCccccccccccccccc
Confidence            35679999999999999999995321  00                           0011111122111   1122234


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCCc-EEEEE
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNIP-LTFVF  157 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~p-~iiv~  157 (219)
                      ++.++||||+.             .+.....++...+|++|+|+|+.++.       ..+..+.+..+...++| +++++
T Consensus       103 ~i~~iDtPGH~-------------df~~~~~~g~~~aD~ailVVda~~G~~~~~~~~~~QT~e~l~l~~~~~i~~iiv~i  169 (245)
T d1r5ba3         103 RFSLLDAPGHK-------------GYVTNMINGASQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQGINHLVVVI  169 (245)
T ss_dssp             EEEECCCCC------------------------TTSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTTCSSEEEEE
T ss_pred             eeeeecccccc-------------cchhhhhhhhhhhcceeeEEEcCCCccCCccccccchHHHHHHHHHcCCCeEEEEE
Confidence            78999999974             34455556667799999999998753       22445666666666665 78999


Q ss_pred             EcccccccccCCCchHhHHHHHHHHHh----cCC----CCCCeEEeecCCCCChHHHH
Q 027757          158 TKCDKMKVAKGRRPDENIKSFQQLIRE----NYP----HHPPWIMTSSVTGLGRDELL  207 (219)
Q Consensus       158 nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~----~~~~~~~~Sa~~~~~v~el~  207 (219)
                      ||+|+...+   ..++.+++..+.+..    ..+    ..++++++||++|.|+.+++
T Consensus       170 NKmD~~~~~---~~e~~~~ei~~~l~~~l~~i~~~~~~~~v~~VPiSA~~G~nI~~~~  224 (245)
T d1r5ba3         170 NKMDEPSVQ---WSEERYKECVDKLSMFLRRVAGYNSKTDVKYMPVSAYTGQNVKDRV  224 (245)
T ss_dssp             ECTTSTTCS---SCHHHHHHHHHHHHHHHHHHHCCCHHHHEEEEECBTTTTBTTSSCC
T ss_pred             EcCCCCccc---hhHHHHHHHHHHHHHHHHHHhCcCcccCCEEEEeeccCCCCcccch
Confidence            999987432   122333443333322    111    13579999999999998764

>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor eEF-1alpha, N-terminal (G) domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.65  E-value=2.5e-16  Score=117.80  Aligned_cols=151  Identities=14%  Similarity=0.195  Sum_probs=91.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCc-----------------------------ccccccCCCCeeEEe---eEEEecCe
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKK-----------------------------ELALTSKKPGKTQLI---NHFLVNKS   86 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~-----------------------------~~~~~~~~~~~t~~~---~~~~~~~~   86 (219)
                      .++|+++|..++|||||+.+|+...                             .........+.+...   .....+..
T Consensus         3 ~iNi~viGHVd~GKTTL~~~Ll~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~e~~rg~ti~~~~~~~~~~~~~   82 (224)
T d1jnya3           3 HLNLIVIGHVDHGKSTLVGRLLMDRGFIDEKTVKEAEEAAKKLGKESEKFAFLLDRLKEERERGVTINLTFMRFETKKYF   82 (224)
T ss_dssp             EEEEEEEESTTSSHHHHHHHHHHHHBCCCHHHHHHHHHHHHHHTCTHHHHHHHHHHHHHC-----------CEEECSSCE
T ss_pred             ccEEEEEecCCCCHHHHHHHHHHHcCCccHHHHHHHHHHHHhcCcccccccccccCchhhhcCCccccceEEEEecCCce
Confidence            4689999999999999999996421                             000111222322221   12223457


Q ss_pred             EEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCC-------CcccHHHHHHhccCCC-cEEEEEE
Q 027757           87 WYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPP-------QKIDLDCANWLGRNNI-PLTFVFT  158 (219)
Q Consensus        87 ~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~-------~~~~~~~~~~~~~~~~-p~iiv~n  158 (219)
                      +.++||||+.             .+.....++...+|++|+|+|+.++.       ..+..+.+..+...++ ++++++|
T Consensus        83 i~iiDtPGH~-------------df~~~~~~g~~~~D~allVVda~~G~~~~t~~~~~qt~e~l~~~~~~~~~~iIv~iN  149 (224)
T d1jnya3          83 FTIIDAPGHR-------------DFVKNMITGASQADAAILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQLIVAVN  149 (224)
T ss_dssp             EEECCCSSST-------------THHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTCHHHHHHHHHHHTTCTTCEEEEE
T ss_pred             eEEeeCCCcH-------------HHHHHHHHHHHhhceEEEEEecccCcccccccccchhHHHHHHHHHhCCCceEEEEE
Confidence            9999999974             35566677777899999999999863       2233333333333344 5888999


Q ss_pred             cccccccccCCCchHhHHHHHHHHH---hc---CCCCCCeEEeecCCCCChHH
Q 027757          159 KCDKMKVAKGRRPDENIKSFQQLIR---EN---YPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       159 K~D~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      |+|+......   ...++.....+.   ..   .....+++++||.+|.|+-+
T Consensus       150 K~D~~~~~~~---~~~~~~v~~~i~~~~~~~~~~~~~i~~IPISA~~G~NV~~  199 (224)
T d1jnya3         150 KMDLTEPPYD---EKRYKEIVDQVSKFMRSYGFNTNKVRFVPVVAPSGDNITH  199 (224)
T ss_dssp             CGGGSSSTTC---HHHHHHHHHHHHHHHHHTTCCCTTCEEEECBTTTTBTTTB
T ss_pred             cccCCCcccc---HHHHHHHHHHHHhHHHhcCCCcccCeEEEEEccCCCCccc
Confidence            9998753221   222332222222   21   22356789999999998753

>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: LAO/AO transport system kinase ArgK
species: Escherichia coli [TaxId: 562]

Probab=99.61  E-value=1.2e-15  Score=119.68  Aligned_cols=156  Identities=14%  Similarity=0.124  Sum_probs=88.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeEEee-----------------EE--------Ee---
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQLIN-----------------HF--------LV---   83 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~~~~-----------------~~--------~~---   83 (219)
                      ...++|+|.|+||||||||+++|....     ..+.....+.+..+..                 .+        ..   
T Consensus        52 ~~~~~IgitG~pGaGKSTLi~~l~~~~~~~g~~vavlavDpss~~~ggailgdr~rm~~~~~~~~~~ir~~~~~g~lgg~  131 (327)
T d2p67a1          52 GNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEAAFIRPVPSSGHLGGA  131 (327)
T ss_dssp             SCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC---------------CTTTTCTTEEEEEECC-----CH
T ss_pred             CCceEEEeeCCCCCCHHHHHHHHHHHHHhcCCceeeecCCCceeeeccccccchhHHHHhcccccccccccccccccccc
Confidence            457899999999999999999998431     1221111221111100                 00        00   


Q ss_pred             --------------cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc--HHHHHHhc
Q 027757           84 --------------NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID--LDCANWLG  147 (219)
Q Consensus        84 --------------~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~--~~~~~~~~  147 (219)
                                    +..++++.|.|.+        +.+.     .+   ...+|.+++|+++..+...+-  ..+++   
T Consensus       132 ~~~~~~~~~~~~~~g~d~iliEtvG~g--------q~e~-----~i---~~~aD~~l~v~~P~~Gd~iq~~k~gi~e---  192 (327)
T d2p67a1         132 SQRARELMLLCEAAGYDVVIVETVGVG--------QSET-----EV---ARMVDCFISLQIAGGGDDLQGIKKGLME---  192 (327)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEEEECCT--------THHH-----HH---HTTCSEEEEEECC------CCCCHHHHH---
T ss_pred             hhhhhHHHHHHHhcCCCeEEEeecccc--------ccch-----hh---hhccceEEEEecCCCchhhhhhchhhhc---
Confidence                          2356777777764        2111     11   222899999998876544332  22222   


Q ss_pred             cCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHh----cCCCCCCeEEeecCCCCChHHHHHHHHHHHhhh
Q 027757          148 RNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRE----NYPHHPPWIMTSSVTGLGRDELLLHMSQLRNYW  217 (219)
Q Consensus       148 ~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~~  217 (219)
                         ++-++|+||+|+.......   ....++...+..    ...+.++++.+||.+|.|+++|++.|.++.+.+
T Consensus       193 ---~aDi~VvNKaD~~~~~~~~---~~~~~~~~al~~~~~~~~~w~p~V~~~SA~~g~Gi~eL~~~I~~~~~~l  260 (327)
T d2p67a1         193 ---VADLIVINKDDGDNHTNVA---IARHMYESALHILRRKYDEWQPRVLTCSALEKRGIDEIWHAIIDFKTAL  260 (327)
T ss_dssp             ---HCSEEEECCCCTTCHHHHH---HHHHHHHHHHHHSCCSBTTBCCEEEECBGGGTBSHHHHHHHHHHHHHHH
T ss_pred             ---cccEEEEEeecccchHHHH---HHHHHHHHHhhhcccCCCCCcceeEEEEeeCCCCHHHHHHHHHHHHHHH
Confidence               3449999999987642111   111222222221    123457899999999999999999998876643

>d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Chloroplast protein translocon GTPase Toc34
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=99.60  E-value=1.6e-15  Score=115.51  Aligned_cols=124  Identities=15%  Similarity=0.106  Sum_probs=81.7

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEE--Ee-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHH
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHF--LV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKG  114 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~--~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~  114 (219)
                      ..++|+|+|.+|+|||||+|+++|. ....++...++|+.....  .. +..+.++||||+......  .+.. ......
T Consensus        31 ~~l~I~LvG~tg~GKSSliN~ilg~-~~~~vs~~~~~T~~~~~~~~~~~g~~i~viDTPGl~~~~~~--~~~~-~~~i~~  106 (257)
T d1h65a_          31 NSLTILVMGKGGVGKSSTVNSIIGE-RVVSISPFQSEGPRPVMVSRSRAGFTLNIIDTPGLIEGGYI--NDMA-LNIIKS  106 (257)
T ss_dssp             CEEEEEEEESTTSSHHHHHHHHHTS-CCSCCCSSSCCCSSCEEEEEEETTEEEEEEECCCSEETTEE--CHHH-HHHHHH
T ss_pred             CCcEEEEECCCCCcHHHHHHHHhCC-CceeecCCCCcceeEEEEEEEeccEEEEEEeeecccCCcch--HHHH-HHHHHH
Confidence            4689999999999999999999997 455666666766654322  23 347999999998643221  1111 122222


Q ss_pred             HhhccCCccEEEEEEeCCCC-CCcccHHHHHHhcc-----CCCcEEEEEEcccccccc
Q 027757          115 YFLNRESLVGVLLLIDASVP-PQKIDLDCANWLGR-----NNIPLTFVFTKCDKMKVA  166 (219)
Q Consensus       115 ~~~~~~~~d~vi~v~d~~~~-~~~~~~~~~~~~~~-----~~~p~iiv~nK~D~~~~~  166 (219)
                      +. .....|+++||++++.. .+..+...++.+..     .-.++++|+||+|....+
T Consensus       107 ~~-~~~~~~~il~v~~~~~~r~~~~~~~~l~~l~~~fg~~~~~~~ivv~t~~D~~~~~  163 (257)
T d1h65a_         107 FL-LDKTIDVLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD  163 (257)
T ss_dssp             HT-TTCEECEEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred             HH-hcCCCCeEEEEEECCCCCCCHHHHHHHHHHHHHcchhhhhCEEEEEECcccCCcC
Confidence            22 23347899999988753 45545444444442     235899999999987654

>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: ATP(GTP)-binding protein PAB0955
species: Pyrococcus abyssi [TaxId: 29292]

Probab=99.58  E-value=1.2e-14  Score=109.50  Aligned_cols=120  Identities=13%  Similarity=0.066  Sum_probs=69.5

Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHH-----HhccCCCcEEEEEEcc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCAN-----WLGRNNIPLTFVFTKC  160 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~-----~~~~~~~p~iiv~nK~  160 (219)
                      .+.++|+||....       ..+........+ ....+.+++++|+.............     ...+...|.++|+||+
T Consensus        96 ~~~~id~~g~~~~-------~~~~~~~~~~~~-~~~~~~~v~vvd~~~~~~~~~~~~~~l~~~~~~~~~~~~~ivvinK~  167 (244)
T d1yrba1          96 DYVLIDTPGQMET-------FLFHEFGVRLME-NLPYPLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKV  167 (244)
T ss_dssp             SEEEEECCSSHHH-------HHHSHHHHHHHH-TSSSCEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCG
T ss_pred             ceeeeccccchhH-------HHHHHHHHHHHh-hccCceEEEEeccccccCchhHhhHHHHHHHHHHHhCCCceeeeecc
Confidence            5899999996311       111111111121 22357899999998765544432111     1123578999999999


Q ss_pred             cccccccCCCchHh---H------------------HHHHHHHHhcCCCCCCeEEeecCCCCChHHHHHHHHHHH
Q 027757          161 DKMKVAKGRRPDEN---I------------------KSFQQLIRENYPHHPPWIMTSSVTGLGRDELLLHMSQLR  214 (219)
Q Consensus       161 D~~~~~~~~~~~~~---~------------------~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~el~~~l~~~~  214 (219)
                      |+...+........   .                  ..+...+. .+...++++++||++|.|+++|+.+|.++.
T Consensus       168 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~vSa~~geGi~~L~~~l~e~~  241 (244)
T d1yrba1         168 DLLSEEEKERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMT-EVLPPVRVLYLSAKTREGFEDLETLAYEHY  241 (244)
T ss_dssp             GGCCHHHHHHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHH-HHSCCCCCEECCTTTCTTHHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH-hhCCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence            99865321110000   0                  01111111 123457899999999999999999998864

>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Elongation factor 2 (eEF-2), N-terminal (G) domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.58  E-value=8.4e-15  Score=115.10  Aligned_cols=151  Identities=16%  Similarity=0.172  Sum_probs=93.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcc-cc-------------cccCCCCeeEEee---EEE----------------ecC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKE-LA-------------LTSKKPGKTQLIN---HFL----------------VNK   85 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~-~~-------------~~~~~~~~t~~~~---~~~----------------~~~   85 (219)
                      ..+|+|+|..++|||||+++|+...- ..             ......+.|....   ..+                ...
T Consensus        17 IRNI~iiGhvd~GKTTL~d~Ll~~~g~i~~~~~~~~~~~D~~~~E~eRgiTi~~~~~~l~~~~~~~~~~~~~~~~~~~~~   96 (341)
T d1n0ua2          17 VRNMSVIAHVDHGKSTLTDSLVQRAGIISAAKAGEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSF   96 (341)
T ss_dssp             EEEEEEECCGGGTHHHHHHHHHHHHBCCBC------------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEE
T ss_pred             CcEEEEEeCCCCcHHHHHHHHHHHCCCccccccccccccccchhHHhcCceEeCCEEEEEeccCcccccchhccccccce
Confidence            34599999999999999999974210 00             0000111121111   111                112


Q ss_pred             eEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccccc
Q 027757           86 SWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus        86 ~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      .+.++||||+....          ......++.   +|++|+|+|+.++...+..++++++...++|+++++||+|....
T Consensus        97 ~inliDtPGh~dF~----------~ev~~al~~---~D~allVVda~eGv~~qT~~~~~~a~~~~~p~i~viNKiDr~~~  163 (341)
T d1n0ua2          97 LINLIDSPGHVDFS----------SEVTAALRV---TDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALL  163 (341)
T ss_dssp             EEEEECCCCCCSSC----------HHHHHHHHT---CSEEEEEEETTTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHH
T ss_pred             EEEEEcCCCcHHHH----------HHHHHHHhh---cCceEEEEecccCcchhHHHHHHHHHHcCCCeEEEEECcccccc
Confidence            48899999975432          112233334   89999999999999999999999999999999999999998655


Q ss_pred             ccCCCchHhHHHHHHHHHh-----------------cCCCCCCeEEeecCCCCC
Q 027757          166 AKGRRPDENIKSFQQLIRE-----------------NYPHHPPWIMTSSVTGLG  202 (219)
Q Consensus       166 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~Sa~~~~~  202 (219)
                      +-.....+-.+.+.+.+..                 ..+..-.+.+.|+..|-+
T Consensus       164 el~~~~~~~~~~l~~~i~~vn~~i~~~~~~~~~~~~~~P~~gnV~FaSa~~g~~  217 (341)
T d1n0ua2         164 ELQVSKEDLYQTFARTVESVNVIVSTYADEVLGDVQVYPARGTVAFGSGLHGWA  217 (341)
T ss_dssp             TSCCCHHHHHHHHHHHHHHHHHHHHHHSCGGGCCCCCCGGGTCEEEEETTTTEE
T ss_pred             cHHhhHHHHHHHHcCccccccceeeecccccccccccCcccCceEecccccCeE
Confidence            4333333333333322211                 111123478999988753

>d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Metallochaperone MeaB
species: Methylobacterium extorquens [TaxId: 408]

Probab=99.52  E-value=9.3e-15  Score=114.38  Aligned_cols=155  Identities=19%  Similarity=0.192  Sum_probs=90.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCc-----ccccccCCCCeeE-----------------EeeEEE------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKK-----ELALTSKKPGKTQ-----------------LINHFL------------   82 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~-----~~~~~~~~~~~t~-----------------~~~~~~------------   82 (219)
                      ...++|+|.|+||||||||+++|....     ..+.....+.++.                 ....+.            
T Consensus        49 ~~~~~igitG~pGaGKSTli~~l~~~~~~~g~~vaViavDpss~~~gg~llgdr~rm~~~~~~~~~~ir~~~~~~~~gg~  128 (323)
T d2qm8a1          49 GRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTRMARLAIDRNAFIRPSPSSGTLGGV  128 (323)
T ss_dssp             CCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGGSTTGGGCTTEEEECCCCCSSHHHH
T ss_pred             CCceEEeeeCCCCCCHHHHHHHHHHHHhhcCCceeeeecccccHHHHhccccchhhHHHHhcccceeeccccccccccch
Confidence            457899999999999999999998531     0111111111000                 000000            


Q ss_pred             -------------ecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhcc-
Q 027757           83 -------------VNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGR-  148 (219)
Q Consensus        83 -------------~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~-  148 (219)
                                   .+..++++.|.|.+...             ......   +|.+++|+.+..++..+      .++. 
T Consensus       129 ~~~~~~~i~~~~~~g~d~iiiETVG~gq~e-------------~~~~~~---~D~~v~v~~p~~GD~iQ------~~k~g  186 (323)
T d2qm8a1         129 AAKTRETMLLCEAAGFDVILVETVGVGQSE-------------TAVADL---TDFFLVLMLPGAGDELQ------GIKKG  186 (323)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEEECSSSSCH-------------HHHHTT---SSEEEEEECSCC------------CCTT
T ss_pred             hHHHHHHHHhhccCCCCeEEEeehhhhhhh-------------hhhhcc---cceEEEEeeccchhhhh------hhhhh
Confidence                         13467899999875321             011112   79999999998765432      1121 


Q ss_pred             -CCCcEEEEEEcccccccccCCCchHhHH-HHHHHHHhc----CCCCCCeEEeecCCCCChHHHHHHHHHHHhh
Q 027757          149 -NNIPLTFVFTKCDKMKVAKGRRPDENIK-SFQQLIREN----YPHHPPWIMTSSVTGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       149 -~~~p~iiv~nK~D~~~~~~~~~~~~~~~-~~~~~~~~~----~~~~~~~~~~Sa~~~~~v~el~~~l~~~~~~  216 (219)
                       ..++-++|+||+|+.+....   ..... .+...+...    ..+.++++.+||+++.|+++++++|.++.+.
T Consensus       187 ilE~aDi~vvNKaD~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~p~V~~~Sa~~g~Gi~el~~~I~~~~~~  257 (323)
T d2qm8a1         187 IFELADMIAVNKADDGDGERR---ASAAASEYRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRSK  257 (323)
T ss_dssp             HHHHCSEEEEECCSTTCCHHH---HHHHHHHHHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred             HhhhhheeeEeccccccchHH---HHHHHHHHHHHhhcccccccCCCCceEEEEecCCCCHHHHHHHHHHHHHH
Confidence             23455999999998754210   01111 112222211    1245789999999999999999999887654

>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Transducin (alpha subunit)
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.48  E-value=5.8e-14  Score=104.51  Aligned_cols=108  Identities=17%  Similarity=0.242  Sum_probs=70.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEe-cCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLV-NKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL  117 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~-~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~  117 (219)
                      ..||+++|..|||||||++++....    ..++.|....  .... +..+.++|++|..          .++..+..+++
T Consensus         6 ~~KilllG~~~vGKTsll~~~~~~~----~~pTiG~~~~--~~~~~~~~~~~~D~~Gq~----------~~r~~w~~~~~   69 (221)
T d1azta2           6 THRLLLLGAGESGKSTIVKQMRILH----VVLTSGIFET--KFQVDKVNFHMFDVGGQR----------DERRKWIQCFN   69 (221)
T ss_dssp             SEEEEEECSTTSSHHHHHHHHHHHH----CCCCCSCEEE--EEEETTEEEEEEECCCST----------TTTTGGGGGCT
T ss_pred             cCEEEEECCCCCCHHHHHHHHhcCC----cCCCCCeEEE--EEEECcEEEEEEecCccc----------eeccchhhhcc
Confidence            4699999999999999999997542    2345553322  2223 3378899998842          22334455565


Q ss_pred             ccCCccEEEEEEeCCCCCCcc--------cHHHHHHhc----c---CCCcEEEEEEccccccc
Q 027757          118 NRESLVGVLLLIDASVPPQKI--------DLDCANWLG----R---NNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       118 ~~~~~d~vi~v~d~~~~~~~~--------~~~~~~~~~----~---~~~p~iiv~nK~D~~~~  165 (219)
                      .   ++++++++|.++.....        -.+....+.    .   .+.|+++++||+|+...
T Consensus        70 ~---~~~ii~v~d~s~~~~~~~~~~~~~r~~e~~~~~~~il~~~~~~~~~iil~~NK~Dl~~~  129 (221)
T d1azta2          70 D---VTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQDLLAE  129 (221)
T ss_dssp             T---CSEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECHHHHHH
T ss_pred             c---ccceEEEEEccccccccccccchHHHHHHHHHHHHHhcChhhCCCcEEEEechhhhhhh
Confidence            6   89999999998632211        011122111    1   57999999999998643

>d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.36  E-value=1.2e-11  Score=95.72  Aligned_cols=126  Identities=21%  Similarity=0.230  Sum_probs=80.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCccccccc-CCCCeeEEeeEE-----------------------------------
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTS-KKPGKTQLINHF-----------------------------------   81 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~-~~~~~t~~~~~~-----------------------------------   81 (219)
                      ..|+|+|+|..++|||||+|+|+|.++.+... +...+...+...                                   
T Consensus        25 ~~P~ivvvG~~SsGKSsliNaLlg~~~lP~~~~~~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  104 (299)
T d2akab1          25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLVLQLVNSTTEYAEFLHCKGKKFTDFEEVRLEIEAETDRVT  104 (299)
T ss_dssp             CCCEEEEEEBTTSCHHHHHHHHHTSCCSCCCSSCSCSSCEEEEEEECSSCEEEETTSTTCCBCCHHHHHHHHHHHHHHHC
T ss_pred             CCCeEEEEcCCCCCHHHHHHHHhCCCcCCCCCCccccCCEEEEEeccccceeEEEeCCCCeeCCHHHHHHHHHHHHHHhh
Confidence            46799999999999999999999985432211 111111111000                                   


Q ss_pred             ---------------E--ecCeEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCccc-H
Q 027757           82 ---------------L--VNKSWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKID-L  140 (219)
Q Consensus        82 ---------------~--~~~~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~-~  140 (219)
                                     .  ....+.++||||+.....   ..........+...|+...  .+++++|.++....+... .
T Consensus       105 ~~~~~~~~~~i~l~~~~p~~~~l~liD~PG~~~~~~~~~~~~~~~~i~~~~~~y~~~~--~~~il~v~~a~~~~~~~~~~  182 (299)
T d2akab1         105 GTNKGISPVPINLRVYSPHVLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKE--NCLILAVSPANSDLANSDAL  182 (299)
T ss_dssp             SSTTCCCSCCEEEEEEETTCCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTST--TEEEEEEEESSSCGGGCHHH
T ss_pred             CCCcCcCCccEEEEEcCCCCCCeeEEccCCccccccCCcchhHHHHHHHHHHHHhcCc--cceeeeecccccchhhhHHH
Confidence                           0  012479999999864322   2223344456666676552  346778888876655544 3


Q ss_pred             HHHHHhccCCCcEEEEEEccccccc
Q 027757          141 DCANWLGRNNIPLTFVFTKCDKMKV  165 (219)
Q Consensus       141 ~~~~~~~~~~~p~iiv~nK~D~~~~  165 (219)
                      .+.+.+.....++++|+||+|..+.
T Consensus       183 ~~~~~~~~~~~r~i~Vltk~D~~~~  207 (299)
T d2akab1         183 KIAKEVDPQGQRTIGVITKLDLMDE  207 (299)
T ss_dssp             HHHHHHCTTCSSEEEEEECGGGSCT
T ss_pred             HHHHHhCcCCCceeeEEeccccccc
Confidence            5566667777899999999998765

>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.35  E-value=3.1e-12  Score=99.03  Aligned_cols=90  Identities=18%  Similarity=0.237  Sum_probs=66.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeE--EEe------------------cCeEEEEeCCCCC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINH--FLV------------------NKSWYIVDLPGYG   96 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~--~~~------------------~~~~~liDtpg~~   96 (219)
                      +...+|+|+|.|+||||||+|++++. ..+...+.|+||.++..  ..+                  ...+.++|.||+.
T Consensus         8 ~~~~kiGivG~Pn~GKSTlfnalT~~-~~~~~anypftTi~pn~g~v~v~d~r~~~l~~~~~~~~~~~~~i~~~DvaGLv   86 (296)
T d1ni3a1           8 GNNLKTGIVGMPNVGKSTFFRAITKS-VLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLT   86 (296)
T ss_dssp             SSCCEEEEEECSSSSHHHHHHHHHHS-TTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGC
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHCC-CCCCcCCCCccCccCCeEEEeccccchhhhhhcccCCceecccceeeeccccc
Confidence            34589999999999999999999986 45667888888876432  222                  1257899999976


Q ss_pred             CCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           97 FAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      .......|      +...++...+.+|+++.|+|+..
T Consensus        87 ~gA~~g~G------LGn~fL~~ir~~d~lihVV~~f~  117 (296)
T d1ni3a1          87 KGASTGVG------LGNAFLSHVRAVDAIYQVVRAFD  117 (296)
T ss_dssp             CCCCSSSS------SCHHHHHHHTTCSEEEEEEECCC
T ss_pred             cccccccc------cHHHHHHHhhccceeEEEEeccC
Confidence            55444333      22455566677999999999875

>d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Dynamin G domain
species: Dictyostelium discoideum [TaxId: 44689]

Probab=99.32  E-value=2e-11  Score=94.87  Aligned_cols=77  Identities=19%  Similarity=0.170  Sum_probs=48.5

Q ss_pred             eEEEEeCCCCCCCCC---CcchhhhHHHHHHHHhhccCCccE-EEEEEeCCCCCCc-ccHHHHHHhccCCCcEEEEEEcc
Q 027757           86 SWYIVDLPGYGFAKA---PDVTRMDWSSFTKGYFLNRESLVG-VLLLIDASVPPQK-IDLDCANWLGRNNIPLTFVFTKC  160 (219)
Q Consensus        86 ~~~liDtpg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~d~-vi~v~d~~~~~~~-~~~~~~~~~~~~~~p~iiv~nK~  160 (219)
                      .+.++||||+.....   ..........+...|...   ++. +++|.++...... ....+.+.+.....++++|+||+
T Consensus       132 ~l~iiDtPG~~~~~~~~~~~~~~~~~~~~~~~yi~~---~~~~il~v~~~~~~~~~~~~~~~~~~~~~~~~r~i~Vitk~  208 (306)
T d1jwyb_         132 NLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKK---QNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKL  208 (306)
T ss_dssp             SEEEEECCCCC---------CSHHHHHHHHHHHHHS---TTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECT
T ss_pred             CceEecCCCccccccCCcchhHHHHHHHHHHHHHhC---CCceeEEeecccccccccHHHHHHHHhCcCCCeEEEEEecc
Confidence            578999999864322   222344455677777776   665 4555566544333 33456666666678999999999


Q ss_pred             ccccc
Q 027757          161 DKMKV  165 (219)
Q Consensus       161 D~~~~  165 (219)
                      |....
T Consensus       209 D~~~~  213 (306)
T d1jwyb_         209 DLMDK  213 (306)
T ss_dssp             TSSCS
T ss_pred             ccccc
Confidence            98754

>d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: GTP-binding protein PH0525
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.20  E-value=1.3e-11  Score=96.45  Aligned_cols=86  Identities=19%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEE---------------------------ecCeEEEEeC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFL---------------------------VNKSWYIVDL   92 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~---------------------------~~~~~~liDt   92 (219)
                      .+|+|+|.|++|||||+|+|++.  ...+.+.+.||.++....                           ....+.++|+
T Consensus         1 ~~v~lvG~pn~GKStlfn~lt~~--~~~v~nypftT~~pn~Gv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~D~   78 (319)
T d1wxqa1           1 MEIGVVGKPNVGKSTFFSAATLV--DVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDV   78 (319)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHC----------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEEC
T ss_pred             CcEeEECCCCCCHHHHHHHHHCC--CCchhcCCCCcccCccceeeCCCCchhhhhhhccCccccccccccccccEEEEEC
Confidence            37999999999999999999996  367788887776532211                           1135899999


Q ss_pred             CCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCC
Q 027757           93 PGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASV  133 (219)
Q Consensus        93 pg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~  133 (219)
                      ||+......  |    +.+...++...+.+|++++|+|+..
T Consensus        79 pGli~ga~~--g----~~~~~~~l~~i~~~d~ii~VVd~~~  113 (319)
T d1wxqa1          79 AGLVPGAHE--G----RGLGNKFLDDLRMASALIHVVDATG  113 (319)
T ss_dssp             C---------------------CCCSSTTCSEEEEEEETTC
T ss_pred             CCcccchhc--c----cchHHHHHHhhccceEEEEEecccc
Confidence            997533222  1    2345667777788999999999874

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=99.17  E-value=2.1e-11  Score=93.17  Aligned_cols=64  Identities=38%  Similarity=0.488  Sum_probs=44.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEeeEEEecCeEEEEeCCCCCCCCC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLINHFLVNKSWYIVDLPGYGFAKA  100 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~~~~  100 (219)
                      ....++|+|+|.||+|||||+|+|.+. ....+++.+|+|++......+..+.++||||+.....
T Consensus       109 ~~~~~~v~vvG~PNvGKSsliN~L~~~-~~~~~~~~pG~Tr~~~~i~~~~~~~l~DTPGi~~p~~  172 (273)
T d1puja_         109 KPRAIRALIIGIPNVGKSTLINRLAKK-NIAKTGDRPGITTSQQWVKVGKELELLDTPGILWPKF  172 (273)
T ss_dssp             CCCCEEEEEEESTTSSHHHHHHHHHTS-CCC------------CCEEETTTEEEEECCCCCCSCC
T ss_pred             CCCceEEEEEecCccchhhhhhhhhcc-ceEEECCcccccccceEEECCCCeEEecCCCccccCC
Confidence            345689999999999999999999997 6889999999999998888888999999999865433

>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: YchF GTP-binding protein N-terminal domain
species: Haemophilus influenzae [TaxId: 727]

Probab=99.06  E-value=3.9e-11  Score=91.92  Aligned_cols=86  Identities=21%  Similarity=0.189  Sum_probs=56.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcCcccccccCCCCeeEEee--EEEe------------------cCeEEEEeCCCCCCC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRKKELALTSKKPGKTQLIN--HFLV------------------NKSWYIVDLPGYGFA   98 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~~~t~~~~--~~~~------------------~~~~~liDtpg~~~~   98 (219)
                      ..+|+|+|-|++|||||+|++++..  +...+++.||..+.  ...+                  ...+.++|.||+...
T Consensus         2 ~~~~GivG~Pn~GKSTlf~~lt~~~--~~~~~ypf~ti~pn~gvv~v~d~r~~~l~~~~~~~~~~~a~i~~~Di~GLi~g   79 (278)
T d1jala1           2 GFKCGIVGLPNVGKSTLFNALTKAG--IEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAG   79 (278)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTT
T ss_pred             CceEEEECCCCCCHHHHHHHHHCCC--CccccCCCCCCCCceEEEecccHhHHHHHHhcCCCceeeeeEEEEEccccCCC
Confidence            3699999999999999999999873  56677777776543  2222                  235789999997533


Q ss_pred             CCCcchhhhHHHHHHHHhhccCCccEEEEEEeCC
Q 027757           99 KAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDAS  132 (219)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~  132 (219)
                      .....|      +...|++..+.+|+++.|+|+.
T Consensus        80 a~~g~G------lg~~FL~~ir~~d~LihVVr~f  107 (278)
T d1jala1          80 ASKGEG------LGNKFLANIRETDAIGHVVRCF  107 (278)
T ss_dssp             HHHHGG------GTCCHHHHHHTCSEEEEEEECS
T ss_pred             cccCCC------ccHHHHHHHHhccceEEEeecc
Confidence            221111      2235666677799999999875

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.86  E-value=8.7e-10  Score=80.88  Aligned_cols=58  Identities=29%  Similarity=0.344  Sum_probs=41.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccc------cccCCCCeeEEeeEEEecCeEEEEeCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELA------LTSKKPGKTQLINHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~   97 (219)
                      ...+++|++|+|||||+|+|.+.....      ....-..||++...+..+....++||||+..
T Consensus        96 kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~r~  159 (225)
T d1u0la2          96 KISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFAN  159 (225)
T ss_dssp             SEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTT
T ss_pred             CeEEEECCCCCCHHHHHHhhcchhhhhccCcccccCCCCccccceeEEEECCCcEEEeCCcccc
Confidence            478999999999999999999863221      1223344777777777777789999999864

>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase YlqF
species: Bacillus subtilis [TaxId: 1423]

Probab=98.80  E-value=2.3e-08  Score=75.91  Aligned_cols=86  Identities=17%  Similarity=0.210  Sum_probs=70.0

Q ss_pred             cCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecC
Q 027757          119 RESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSV  198 (219)
Q Consensus       119 ~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~  198 (219)
                      .+.+|+||+|+|+..|.+..+..+.++++  ++|.++|+||+|+.+.       +..+++.+.+....   ..++++|+.
T Consensus        13 i~~~DvIl~V~DaR~P~ss~~~~l~~~~~--~Kp~IlVlNK~DLv~~-------~~~~~w~~~f~~~~---~~~i~isa~   80 (273)
T d1puja_          13 LKLIDIVYELVDARIPMSSRNPMIEDILK--NKPRIMLLNKADKADA-------AVTQQWKEHFENQG---IRSLSINSV   80 (273)
T ss_dssp             GGGCSEEEEEEETTSTTTTSCHHHHHHCS--SSCEEEEEECGGGSCH-------HHHHHHHHHHHTTT---CCEEECCTT
T ss_pred             HHhCCEEEEEEECCCCCCCCCHHHHHHHc--CCCeEEEEECccCCch-------HHHHHHHHHHHhcC---Cccceeecc
Confidence            44489999999999999998887777776  7899999999999875       45677777776432   578999999


Q ss_pred             CCCChHHHHHHHHHHHhh
Q 027757          199 TGLGRDELLLHMSQLRNY  216 (219)
Q Consensus       199 ~~~~v~el~~~l~~~~~~  216 (219)
                      ++.+..++...+.+....
T Consensus        81 ~~~~~~~~~~~~~~~l~~   98 (273)
T d1puja_          81 NGQGLNQIVPASKEILQE   98 (273)
T ss_dssp             TCTTGGGHHHHHHHHHHH
T ss_pred             cCCCccccchhhhhhhhh
Confidence            999999888877765543

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.67  E-value=3.2e-09  Score=78.07  Aligned_cols=57  Identities=26%  Similarity=0.363  Sum_probs=35.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccc------cccCCCCeeEEeeEEEecCeEEEEeCCCCCC
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELA------LTSKKPGKTQLINHFLVNKSWYIVDLPGYGF   97 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~------~~~~~~~~t~~~~~~~~~~~~~liDtpg~~~   97 (219)
                      ...+++|++|+|||||+|+|.+.....      ....-..||+....+..+ .-.++||||+..
T Consensus        98 ~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~~~l~~~~-gg~iiDTPG~r~  160 (231)
T d1t9ha2          98 KTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHVELIHTS-GGLVADTPGFSS  160 (231)
T ss_dssp             SEEEEEESHHHHHHHHHHHHCC-------------------CCCCCEEEET-TEEEESSCSCSS
T ss_pred             ceEEEECCCCccHHHHHHhhccHhHhhhcccccccCCCceeeeeEEEEecC-CCEEEECCcccc
Confidence            467899999999999999999863222      111222355555555554 456889999864

>d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Hypothetical protein YjiA, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.61  E-value=1.5e-07  Score=69.13  Aligned_cols=24  Identities=17%  Similarity=0.295  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|-.+|.|.-|||||||+++++..
T Consensus         3 iPv~iitGFLGaGKTTll~~lL~~   26 (222)
T d1nija1           3 IAVTLLTGFLGAGKTTLLRHILNE   26 (222)
T ss_dssp             EEEEEEEESSSSSCHHHHHHHHHS
T ss_pred             CCEEEEeeCCCCCHHHHHHHHHhc
Confidence            567899999999999999999875

>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Archaeon Acidianus ambivalens [TaxId: 2283]

Probab=98.59  E-value=5.5e-08  Score=70.64  Aligned_cols=100  Identities=19%  Similarity=0.087  Sum_probs=51.4

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKMK  164 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~  164 (219)
                      ..++++||+|............++..+...    .+ .+-+++|++++......+ .........+ +--+++||.|...
T Consensus        95 ~d~IlIDTaGr~~~~~~~~~~~el~~~~~~----~~-~~~~~LVl~a~~~~~~~~-~~~~~~~~~~-~~~lI~TKlDet~  167 (211)
T d1j8yf2          95 MEIIIVDTAGRHGYGEEAALLEEMKNIYEA----IK-PDEVTLVIDASIGQKAYD-LASKFNQASK-IGTIIITKMDGTA  167 (211)
T ss_dssp             CSEEEEECCCSCCTTCHHHHHHHHHHHHHH----HC-CSEEEEEEEGGGGGGHHH-HHHHHHHHCT-TEEEEEECTTSCS
T ss_pred             CceEEEecCCcCccchhhHHHHHHHHHHhh----cC-CceEEEEEecccCcchHH-HHhhhhcccC-cceEEEecccCCC
Confidence            378999999974221111111222222222    11 467899999986543322 2223333333 3457799999754


Q ss_pred             cccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757          165 VAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      .         .=.+.....   ....|+.+++  .|.++++
T Consensus       168 ~---------~G~~l~~~~---~~~lPi~~it--~Gq~v~D  194 (211)
T d1j8yf2         168 K---------GGGALSAVA---ATGATIKFIG--TGEKIDE  194 (211)
T ss_dssp             C---------HHHHHHHHH---TTTCCEEEEE--CSSSTTC
T ss_pred             c---------ccHHHHHHH---HHCcCEEEEe--CCCCccc
Confidence            2         112222221   1236777777  4666655

>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=98.53  E-value=2.8e-07  Score=67.33  Aligned_cols=82  Identities=20%  Similarity=0.268  Sum_probs=58.3

Q ss_pred             ccEEEEEEeCCCCCCccc--HHHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          122 LVGVLLLIDASVPPQKID--LDCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~--~~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      .|.+++|+.+.+|.....  .+++-.....++|.++|+||+|+.+.       +..+.+....... ....+++.+|+++
T Consensus        11 iD~vliV~s~~~P~~~~~~ldR~Lv~a~~~~i~pvIvlnK~DL~~~-------~~~~~~~~~~~~~-~~~~~v~~vSa~~   82 (225)
T d1u0la2          11 VDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE-------DDLRKVRELEEIY-SGLYPIVKTSAKT   82 (225)
T ss_dssp             CCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH-------HHHHHHHHHHHHH-TTTSCEEECCTTT
T ss_pred             CCEEEEEEeCCCCCCCHHHHHHHHHHHHHcCCCEEEEEeCcccCCH-------HHHHHHHHhhccc-ccceeEEEecccc
Confidence            689999998888654432  13344445689999999999999864       3344444333322 2236899999999


Q ss_pred             CCChHHHHHHHH
Q 027757          200 GLGRDELLLHMS  211 (219)
Q Consensus       200 ~~~v~el~~~l~  211 (219)
                      +.|++++.+++.
T Consensus        83 ~~g~~~L~~~l~   94 (225)
T d1u0la2          83 GMGIEELKEYLK   94 (225)
T ss_dssp             CTTHHHHHHHHS
T ss_pred             chhHhhHHHHhc
Confidence            999999998773

>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermotoga maritima [TaxId: 2336]

Probab=98.45  E-value=3.2e-07  Score=66.58  Aligned_cols=150  Identities=14%  Similarity=0.106  Sum_probs=74.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcCcccccccCCC----------------------CeeEEeeE--------------
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRKKELALTSKKP----------------------GKTQLINH--------------   80 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~~~----------------------~~t~~~~~--------------   80 (219)
                      ..+..|+++|++|+||||.+-.|... +.....+..                      +.......              
T Consensus         9 ~~p~vi~lvGptGvGKTTTiAKLAa~-~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~i~~~~~~~~~d~~~~~~~~~~   87 (213)
T d1vmaa2           9 EPPFVIMVVGVNGTGKTTSCGKLAKM-FVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVA   87 (213)
T ss_dssp             SSCEEEEEECCTTSSHHHHHHHHHHH-HHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHH
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHH-HHHCCCceEEEeecccccchhHHHHHHhhhcCccccccCCCCcHHHHHHHHHH
Confidence            44456889999999999998888754 221110000                      01100000              


Q ss_pred             --EEecCeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhcc-CCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEE
Q 027757           81 --FLVNKSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNR-ESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVF  157 (219)
Q Consensus        81 --~~~~~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~  157 (219)
                        ...+..++++||+|....  +.....++..+.+..-... ...+-+++|+|+........ +........ -+--+++
T Consensus        88 ~~~~~~~d~ilIDTaGr~~~--d~~~~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~-~~~~lI~  163 (213)
T d1vmaa2          88 HALARNKDVVIIDTAGRLHT--KKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTGQNGLV-QAKIFKEAV-NVTGIIL  163 (213)
T ss_dssp             HHHHTTCSEEEEEECCCCSC--HHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGHHHHHH-HHHHHHHHS-CCCEEEE
T ss_pred             HHHHcCCCEEEEeccccccc--hHHHHHHHHHHHhhhhhccccccceeEEeeccccCcchhh-hhhhhcccc-CCceEEE
Confidence              001336899999996422  2222222222222211110 11356899999975422211 222222222 2456889


Q ss_pred             EcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757          158 TKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       158 nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      ||.|....-      -.+-.+....+      .|+.+++  +|.++++
T Consensus       164 TKlDe~~~~------G~~l~~~~~~~------~Pi~~i~--~Gq~v~D  197 (213)
T d1vmaa2         164 TKLDGTAKG------GITLAIARELG------IPIKFIG--VGEKAED  197 (213)
T ss_dssp             ECGGGCSCT------THHHHHHHHHC------CCEEEEE--CSSSGGG
T ss_pred             ecccCCCcc------cHHHHHHHHHC------CCEEEEe--CCCCccc
Confidence            999965321      12333333333      5888887  4655655

>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Escherichia coli [TaxId: 562]

Probab=98.27  E-value=9.1e-07  Score=64.00  Aligned_cols=103  Identities=17%  Similarity=0.054  Sum_probs=52.1

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh-ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL-NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ..++++||+|....  +.....++..+....-. .....+-+++|+|+........ ......... -+--+++||.|-.
T Consensus        92 ~d~ilIDTaGr~~~--d~~~~~el~~l~~~~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~-~~~~lIlTKlDe~  167 (211)
T d2qy9a2          92 IDVLIADTAGRLQN--KSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVS-QAKLFHEAV-GLTGITLTKLDGT  167 (211)
T ss_dssp             CSEEEECCCCCGGG--HHHHHHHHHHHHHHHTTTCTTCCSEEEEEEEGGGTHHHHH-HHHHHHHHS-CCCEEEEECCTTC
T ss_pred             CCEEEeccCCCccc--cHHHHHHHHHHHHHHhhhcccCcceeeeehhcccCcchHH-HHhhhhhcc-CCceEEEeecCCC
Confidence            36899999996421  12222222222222110 0011357899999986433221 222222222 2456889999965


Q ss_pred             ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757          164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      ..-      -.+-......+      .|+.+++  .|.++++
T Consensus       168 ~~~------G~~l~~~~~~~------~Pi~~i~--~Gq~v~D  195 (211)
T d2qy9a2         168 AKG------GVIFSVADQFG------IPIRYIG--VGERIED  195 (211)
T ss_dssp             TTT------THHHHHHHHHC------CCEEEEE--CSSSGGG
T ss_pred             CCc------cHHHHHHHHHC------CCEEEEe--CCCCccc
Confidence            431      12333333333      6888887  5666655

>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Probable GTPase EngC (YjeQ), C-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=98.23  E-value=1.7e-07  Score=68.64  Aligned_cols=84  Identities=18%  Similarity=0.209  Sum_probs=56.0

Q ss_pred             ccEEEEEEeCCCCCCcccH--HHHHHhccCCCcEEEEEEcccccccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCC
Q 027757          122 LVGVLLLIDASVPPQKIDL--DCANWLGRNNIPLTFVFTKCDKMKVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVT  199 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~--~~~~~~~~~~~p~iiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~  199 (219)
                      +|.+++|+.+.+|.....+  +++-.....+++.++|+||+|+.+..+   ..+.++.+.+.+..   ...+++.+|+++
T Consensus        11 iD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvIvlnK~DL~~~~~---~~~~~~~~~~~y~~---~g~~v~~~Sa~~   84 (231)
T d1t9ha2          11 VDQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMDLIEDQD---TEDTIQAYAEDYRN---IGYDVYLTSSKD   84 (231)
T ss_dssp             CCEEEEEEESTTTTCCHHHHHHHHHHHHTTTCEEEEEEECGGGCCCHH---HHHHHHHHHHHHHH---HTCCEEECCHHH
T ss_pred             cCEEEEEEECCCCCCCHHHHHHHHHHHHHcCCCEEEEEecccccccHH---HHHHHHHHHHHHhh---ccccceeeecCC
Confidence            6889999998877543321  344444568999999999999986421   01112222222222   136899999999


Q ss_pred             CCChHHHHHHHH
Q 027757          200 GLGRDELLLHMS  211 (219)
Q Consensus       200 ~~~v~el~~~l~  211 (219)
                      +.|+++|.+++.
T Consensus        85 ~~gl~~L~~~l~   96 (231)
T d1t9ha2          85 QDSLADIIPHFQ   96 (231)
T ss_dssp             HTTCTTTGGGGT
T ss_pred             hhHHHHHHHhhc
Confidence            999999887663

>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal recognition particle receptor FtsY
species: Thermus aquaticus [TaxId: 271]

Probab=98.18  E-value=4.9e-06  Score=59.97  Aligned_cols=103  Identities=15%  Similarity=0.161  Sum_probs=52.4

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhh-ccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFL-NRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ..++++||+|....  +.....++..+.+..-. .....+-+++|+|++....... .........+ +--+++||.|-.
T Consensus        89 ~d~ilIDTaGr~~~--d~~l~~el~~~~~~~~~~~~~~p~~~~LVl~a~~~~~~~~-~~~~~~~~~~-~~~lI~TKlDet  164 (207)
T d1okkd2          89 YDLLFVDTAGRLHT--KHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQNGLE-QAKKFHEAVG-LTGVIVTKLDGT  164 (207)
T ss_dssp             CSEEEECCCCCCTT--CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTHHHH-HHHHHHHHHC-CSEEEEECTTSS
T ss_pred             CCEEEcCccccchh--hHHHHHHHHHHHHHhhhcccCCCceEEEEeecccCchHHH-HHHHhhhccC-CceEEEeccCCC
Confidence            47899999996422  22222222222222110 1112467899999987654332 2222222222 336789999965


Q ss_pred             ccccCCCchHhHHHHHHHHHhcCCCCCCeEEeecCCCCChHH
Q 027757          164 KVAKGRRPDENIKSFQQLIRENYPHHPPWIMTSSVTGLGRDE  205 (219)
Q Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~e  205 (219)
                      ..-+      .+-.+....+      .|+.+++  +|.+.++
T Consensus       165 ~~~G------~~l~~~~~~~------~Pi~~i~--~Gq~p~D  192 (207)
T d1okkd2         165 AKGG------VLIPIVRTLK------VPIKFVG--VGEGPDD  192 (207)
T ss_dssp             CCCT------THHHHHHHHC------CCEEEEE--CSSSTTC
T ss_pred             CCcc------HHHHHHHHHC------CCEEEEe--CCCChHh
Confidence            4321      2333344333      5777777  3444443

>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: GTPase domain of the signal sequence recognition protein Ffh
species: Thermus aquaticus [TaxId: 271]

Probab=98.12  E-value=1.9e-06  Score=62.24  Aligned_cols=70  Identities=19%  Similarity=0.154  Sum_probs=38.3

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHh-ccCCCcEEEEEEccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWL-GRNNIPLTFVFTKCDKM  163 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~-~~~~~p~iiv~nK~D~~  163 (219)
                      ..++++||+|....  +.....++..+.+    .. ..+-+++|+|+..+....  ...... ...+ +--+++||.|-.
T Consensus        93 ~d~vlIDTaGr~~~--d~~~~~el~~~~~----~~-~~~~~llv~~a~~~~~~~--~~~~~f~~~~~-~~~~I~TKlDe~  162 (207)
T d1ls1a2          93 RDLILVDTAGRLQI--DEPLMGELARLKE----VL-GPDEVLLVLDAMTGQEAL--SVARAFDEKVG-VTGLVLTKLDGD  162 (207)
T ss_dssp             CCEEEEECCCCSSC--CHHHHHHHHHHHH----HH-CCSEEEEEEEGGGTHHHH--HHHHHHHHHTC-CCEEEEECGGGC
T ss_pred             Ccceeecccccchh--hhhhHHHHHHHHh----hc-CCceEEEEeccccchhHH--HHHHHHHhhCC-CCeeEEeecCcc
Confidence            36899999997432  2222222223222    11 247789999998653322  222222 2222 335889999965


Q ss_pred             c
Q 027757          164 K  164 (219)
Q Consensus       164 ~  164 (219)
                      .
T Consensus       163 ~  163 (207)
T d1ls1a2         163 A  163 (207)
T ss_dssp             S
T ss_pred             c
Confidence            4

>d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=1.6e-07  Score=68.00  Aligned_cols=39  Identities=21%  Similarity=0.184  Sum_probs=28.0

Q ss_pred             cEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccc
Q 027757          123 VGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCD  161 (219)
Q Consensus       123 d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D  161 (219)
                      ++.++++|+..+.......+.+.+.....+++++.++++
T Consensus        85 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~  123 (213)
T d1bifa1          85 GGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESICV  123 (213)
T ss_dssp             CCSEEEEESCCCSHHHHHHHHHHHHHHTCEEEEEEECCC
T ss_pred             CCCEEEeecCCccHHHHHHHHHHHHhcCCeEEEEEeecc
Confidence            456788999887655544555566667788888888875

>d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: G proteins
domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=3.5e-05  Score=57.95  Aligned_cols=60  Identities=28%  Similarity=0.241  Sum_probs=39.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcCcccccccC-CCCeeEEeeEEEe------cCeEEEEeCCCCCC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRKKELALTSK-KPGKTQLINHFLV------NKSWYIVDLPGYGF   97 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~~~~~~~~~-~~~~t~~~~~~~~------~~~~~liDtpg~~~   97 (219)
                      ...-|.|+|+.++|||+|+|.|++..+.....+ ...+|..+-.+..      +..+.++||.|...
T Consensus        31 ~v~vvsi~G~~~sGKS~llN~l~~~~~~f~~~~~~~~~T~Giw~~~~~~~~~~~~~~~~lDteG~~~   97 (277)
T d1f5na2          31 PMVVVAIVGLYRTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGD   97 (277)
T ss_dssp             BEEEEEEEEBTTSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCC
T ss_pred             CEEEEEEECCCCCCHHHHHHHHcCCCCCCccCCCCCCCCCceEEEEeeccCCCCceEEEEecccccc
Confidence            355789999999999999999999753222221 2234443322221      22589999999764

>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hypothetical kinase-like protein Aq 1292
species: Aquifex aeolicus [TaxId: 63363]

Probab=97.74  E-value=7.5e-06  Score=57.18  Aligned_cols=23  Identities=30%  Similarity=0.616  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .||+|+|++|+|||||++.+++.
T Consensus         1 ~ki~I~G~~G~GKSTLl~~i~~~   23 (178)
T d1ye8a1           1 MKIIITGEPGVGKTTLVKKIVER   23 (178)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCcHHHHHHHHHHhc
Confidence            38999999999999999999984

>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]

Probab=97.71  E-value=8.8e-06  Score=56.35  Aligned_cols=24  Identities=33%  Similarity=0.534  Sum_probs=22.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+|++||||||++++|...
T Consensus         4 ~~~I~i~G~pGsGKTTia~~La~~   27 (173)
T d1rkba_           4 LPNILLTGTPGVGKTTLGKELASK   27 (173)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            578999999999999999999875

>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Escherichia coli [TaxId: 562]

Probab=97.67  E-value=1.2e-05  Score=55.44  Aligned_cols=24  Identities=29%  Similarity=0.472  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|-++|+|.+|||||||+++|...
T Consensus         2 ~Pvi~itG~~GSGKTTL~~~L~~~   25 (170)
T d1np6a_           2 IPLLAFAAWSGTGKTTLLKKLIPA   25 (170)
T ss_dssp             CCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCEEEEEcCCCCCHHHHHHHHHHH
Confidence            467999999999999999999864

>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain
species: Haemophilus influenzae [TaxId: 727]

Probab=97.62  E-value=1.2e-05  Score=56.25  Aligned_cols=24  Identities=42%  Similarity=0.531  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+|+|.|++|+|||||+++|...
T Consensus         7 ~K~I~i~G~~GsGKTTla~~La~~   30 (192)
T d1lw7a2           7 AKTVAILGGESSGKSVLVNKLAAV   30 (192)
T ss_dssp             CEEEEEECCTTSHHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999999875

>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Probable kinase LmjF30.1890
species: Leishmania major [TaxId: 5664]

Probab=97.57  E-value=2.6e-05  Score=54.02  Aligned_cols=26  Identities=19%  Similarity=0.335  Sum_probs=23.2

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +...+|+|.|++||||||+.+.|...
T Consensus         3 pk~~~I~i~G~~GsGKTT~~~~La~~   28 (174)
T d1y63a_           3 PKGINILITGTPGTGKTSMAEMIAAE   28 (174)
T ss_dssp             CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence            44678999999999999999999875

>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.51  E-value=0.00012  Score=50.99  Aligned_cols=26  Identities=19%  Similarity=0.282  Sum_probs=22.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+.-|+++|.+||||||++..+...
T Consensus        12 ~~p~liil~G~pGsGKST~a~~l~~~   37 (172)
T d1yj5a2          12 PNPEVVVAVGFPGAGKSTFIQEHLVS   37 (172)
T ss_dssp             SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred             CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence            44567999999999999999998764

>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Maize (Zea mays) [TaxId: 4577]

Probab=97.50  E-value=2.9e-05  Score=54.88  Aligned_cols=25  Identities=24%  Similarity=0.294  Sum_probs=22.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+|+|+|++||||||+++.|...
T Consensus         2 ~Pm~I~i~GppGsGKsT~a~~La~~   26 (189)
T d1zaka1           2 DPLKVMISGAPASGKGTQCELIKTK   26 (189)
T ss_dssp             CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            4678999999999999999999875

>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Dictyostelium discoideum [TaxId: 44689]

Probab=97.47  E-value=3.8e-05  Score=54.40  Aligned_cols=26  Identities=23%  Similarity=0.353  Sum_probs=22.1

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+..|+|+|++||||||++.+|...
T Consensus         4 ~kp~iI~i~G~pGSGKsT~a~~La~~   29 (194)
T d1qf9a_           4 SKPNVVFVLGGPGSGKGTQCANIVRD   29 (194)
T ss_dssp             CCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            34457899999999999999999875

>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase-like domain of Cask
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=2.5e-05  Score=54.88  Aligned_cols=22  Identities=32%  Similarity=0.644  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+||+|+||+||+++|+..
T Consensus         5 ~ivl~Gpsg~GK~tl~~~L~~~   26 (178)
T d1kgda_           5 TLVLLGAHGVGRRHIKNTLITK   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999975

>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.42  E-value=2.9e-05  Score=54.61  Aligned_cols=22  Identities=32%  Similarity=0.520  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+||+||||||+++.|...
T Consensus         4 iivl~GpsG~GK~tl~~~L~~~   25 (182)
T d1znwa1           4 VVVLSGPSAVGKSTVVRCLRER   25 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999875

>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Polynucleotide kinase, kinase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=97.39  E-value=4.3e-05  Score=51.72  Aligned_cols=22  Identities=23%  Similarity=0.357  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|++.|++||||||++++|...
T Consensus         4 lIii~G~pGsGKTTla~~L~~~   25 (152)
T d1ly1a_           4 IILTIGCPGSGKSTWAREFIAK   25 (152)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            3788999999999999998764

>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.38  E-value=4.2e-05  Score=52.81  Aligned_cols=23  Identities=26%  Similarity=0.483  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|+++|++||||||+...|...
T Consensus         2 p~IvliG~~G~GKSTig~~La~~   24 (165)
T d2iyva1           2 PKAVLVGLPGSGKSTIGRRLAKA   24 (165)
T ss_dssp             CSEEEECSTTSSHHHHHHHHHHH
T ss_pred             CcEEEECCCCCCHHHHHHHHHHH
Confidence            78999999999999999998765

>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.35  E-value=0.00017  Score=53.66  Aligned_cols=25  Identities=24%  Similarity=0.481  Sum_probs=22.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..-.++++|++|+|||++++.|...
T Consensus        38 ~k~n~lLVG~~GvGKTalv~~la~r   62 (268)
T d1r6bx2          38 RKNNPLLVGESGVGKTAIAEGLAWR   62 (268)
T ss_dssp             SSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccCCcEEECCCCCcHHHHHHHHHHH
Confidence            3458999999999999999999986

>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]

Probab=97.32  E-value=8e-05  Score=52.50  Aligned_cols=24  Identities=21%  Similarity=0.340  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+||+|+|+|||||||++..|...
T Consensus         3 ~~riil~G~pGSGKsT~a~~La~~   26 (190)
T d1ak2a1           3 GVRAVLLGPPGAGKGTQAPKLAKN   26 (190)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ccEEEEECCCCCCHHHHHHHHHHH
Confidence            469999999999999999999864

>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]

Probab=97.30  E-value=9.4e-05  Score=52.30  Aligned_cols=26  Identities=19%  Similarity=0.336  Sum_probs=23.3

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..-.+|+|+|+|||||||+...|...
T Consensus         4 ~r~mrIiliG~PGSGKtT~a~~La~~   29 (189)
T d2ak3a1           4 ARLLRAAIMGAPGSGKGTVSSRITKH   29 (189)
T ss_dssp             SCCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeEEEECCCCCCHHHHHHHHHHH
Confidence            34679999999999999999999985

>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.30  E-value=6.6e-05  Score=52.42  Aligned_cols=22  Identities=18%  Similarity=0.439  Sum_probs=20.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|+|||||||++..|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1zina1           2 NLVLMGLPGAGKGTQAEKIVAA   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999998765

>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein BH3686
species: Bacillus halodurans [TaxId: 86665]

Probab=97.27  E-value=6.8e-05  Score=51.57  Aligned_cols=22  Identities=32%  Similarity=0.472  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|.|++|+||||+.++|...
T Consensus         4 lI~i~G~~GsGKTTva~~L~~~   25 (176)
T d2bdta1           4 LYIITGPAGVGKSTTCKRLAAQ   25 (176)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999875

>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Haemolysin B ATP-binding protein
species: Escherichia coli [TaxId: 562]

Probab=97.27  E-value=6.9e-05  Score=55.09  Aligned_cols=23  Identities=39%  Similarity=0.537  Sum_probs=21.5

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+|+|+|++|+|||||++.+.|-
T Consensus        30 e~vaIvG~sGsGKSTLl~ll~gl   52 (241)
T d2pmka1          30 EVIGIVGRSGSGKSTLTKLIQRF   52 (241)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCCHHHHHHHHHhc
Confidence            37999999999999999999995

>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.27  E-value=6.7e-05  Score=51.70  Aligned_cols=21  Identities=24%  Similarity=0.555  Sum_probs=19.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.|+|.+|||||||+++|+..
T Consensus         4 i~I~G~~gSGKTTli~~l~~~   24 (165)
T d1xjca_           4 WQVVGYKHSGKTTLMEKWVAA   24 (165)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEeCCCCCHHHHHHHHHHH
Confidence            579999999999999999874

>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein rbstp0775
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=97.25  E-value=9.8e-05  Score=51.96  Aligned_cols=27  Identities=33%  Similarity=0.409  Sum_probs=22.9

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+++-|+|.|++|||||||.++|...
T Consensus        19 ~~~~~iIgI~G~~GSGKSTla~~L~~~   45 (198)
T d1rz3a_          19 TAGRLVLGIDGLSRSGKTTLANQLSQT   45 (198)
T ss_dssp             CSSSEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CCCCEEEEEECCCCCCHHHHHHHHHHH
Confidence            345677999999999999999999753

>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.24  E-value=5.1e-05  Score=53.52  Aligned_cols=21  Identities=38%  Similarity=0.583  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|+||+|||||||+++|+..
T Consensus         4 Ivl~GpsG~GK~tl~~~L~~~   24 (186)
T d1gkya_           4 IVISGPSGTGKSTLLKKLFAE   24 (186)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            889999999999999999875

>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: UMP/CMP kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=8.2e-05  Score=52.57  Aligned_cols=24  Identities=25%  Similarity=0.338  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ++.|+|+|++||||||.+..|...
T Consensus         1 p~iI~i~GppGSGKsT~a~~La~~   24 (194)
T d1teva_           1 PLVVFVLGGPGAGKGTQCARIVEK   24 (194)
T ss_dssp             CEEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            468999999999999999999874

>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=97.22  E-value=0.00015  Score=51.26  Aligned_cols=24  Identities=21%  Similarity=0.609  Sum_probs=21.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.++++|++|+|||+++..|...
T Consensus        43 k~n~lLvG~pGVGKTalv~~LA~r   66 (195)
T d1jbka_          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (195)
T ss_dssp             SCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEEecCCcccHHHHHHHHHH
Confidence            457999999999999999999986

>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Uridylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.21  E-value=0.00011  Score=51.94  Aligned_cols=26  Identities=27%  Similarity=0.443  Sum_probs=23.0

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..+.|+|+|++||||||+...|...
T Consensus         6 ~~~~iI~i~GppGSGKsT~a~~La~~   31 (196)
T d1ukza_           6 DQVSVIFVLGGPGAGKGTQCEKLVKD   31 (196)
T ss_dssp             TTCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence            44678999999999999999999875

>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.20  E-value=0.00011  Score=51.40  Aligned_cols=23  Identities=26%  Similarity=0.359  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+|+|+|++||||||+...|...
T Consensus         1 m~I~i~G~pGsGKsT~a~~La~~   23 (181)
T d2cdna1           1 MRVLLLGPPGAGKGTQAVKLAEK   23 (181)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999875

>d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.20  E-value=0.00031  Score=51.67  Aligned_cols=23  Identities=17%  Similarity=0.335  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|++.|++|+|||++++++...
T Consensus        41 ~~vLL~GppGtGKT~la~alA~~   63 (246)
T d1d2na_          41 VSVLLEGPPHSGKTALAAKIAEE   63 (246)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECcCCCCHHHHHHHHhhc
Confidence            45999999999999999999874

>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Bacillus globisporus [TaxId: 1459]

Probab=97.19  E-value=0.0001  Score=51.58  Aligned_cols=22  Identities=23%  Similarity=0.510  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+|+|++||||||++..|...
T Consensus         2 ~I~i~G~pGSGKsT~a~~La~~   23 (182)
T d1s3ga1           2 NIVLMGLPGAGKGTQADRIVEK   23 (182)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            7999999999999999999875

>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter LmrA, C-terminal domain
species: Lactococcus lactis [TaxId: 1358]

Probab=97.19  E-value=9.7e-05  Score=54.32  Aligned_cols=22  Identities=36%  Similarity=0.395  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|+|||||++.+.|-
T Consensus        30 ~vaivG~sGsGKSTLl~ll~gl   51 (242)
T d1mv5a_          30 IIAFAGPSGGGKSTIFSLLERF   51 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            7999999999999999999985

>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Multidrug resistance ABC transporter MsbA, C-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.18  E-value=9.8e-05  Score=54.67  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|||||||++.+++-
T Consensus        42 e~iaivG~sGsGKSTLl~ll~gl   64 (253)
T d3b60a1          42 KTVALVGRSGSGKSTIASLITRF   64 (253)
T ss_dssp             CEEEEEECTTSSHHHHHHHHTTT
T ss_pred             CEEEEECCCCChHHHHHHHHhcc
Confidence            37999999999999999999985

>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Escherichia coli [TaxId: 562]

Probab=97.16  E-value=0.00011  Score=51.17  Aligned_cols=23  Identities=22%  Similarity=0.364  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+|+|+|++||||||.+..|...
T Consensus         1 m~I~i~G~pGSGKsT~~~~La~~   23 (179)
T d1e4va1           1 MRIILLGAPVAGKGTQAQFIMEK   23 (179)
T ss_dssp             CEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            37999999999999999999865

>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00011  Score=53.55  Aligned_cols=22  Identities=27%  Similarity=0.412  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        28 i~~liGpsGsGKSTLl~~i~Gl   49 (232)
T d2awna2          28 FVVFVGPSGCGKSTLLRMIAGL   49 (232)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999999985

>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Escherichia coli [TaxId: 562]

Probab=97.15  E-value=0.00012  Score=49.65  Aligned_cols=22  Identities=23%  Similarity=0.425  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+++|++|+||||+...|...
T Consensus         4 ~I~l~G~~GsGKSTvak~La~~   25 (169)
T d1kaga_           4 NIFLVGPMGAGKSTIGRQLAQQ   25 (169)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999999875

>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Peptide transporter Tap1, C-terminal ABC domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.12  E-value=0.00012  Score=54.11  Aligned_cols=23  Identities=26%  Similarity=0.322  Sum_probs=21.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -.++|+|++|||||||++.+.+-
T Consensus        41 e~vaivG~sGsGKSTLl~li~gl   63 (251)
T d1jj7a_          41 EVTALVGPNGSGKSTVAALLQNL   63 (251)
T ss_dssp             CEEEEECSTTSSHHHHHHHHTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHhcc
Confidence            37999999999999999999985

>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ0796
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.12  E-value=0.00011  Score=53.41  Aligned_cols=22  Identities=32%  Similarity=0.436  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~gl   54 (230)
T d1l2ta_          33 FVSIMGPSGSGKSTMLNIIGCL   54 (230)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCcchhhHhccCC
Confidence            6899999999999999999985

>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter PF0895
species: Pyrococcus furiosus [TaxId: 2261]

Probab=97.11  E-value=0.00012  Score=52.16  Aligned_cols=22  Identities=18%  Similarity=0.419  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.++|.
T Consensus        29 i~~l~G~NGsGKSTLl~~i~gl   50 (200)
T d1sgwa_          29 VVNFHGPNGIGKTTLLKTISTY   50 (200)
T ss_dssp             CEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCChHHHHHHHHhcc
Confidence            6899999999999999999995

>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Cancer-related NTPase, C1orf57
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.10  E-value=0.00012  Score=50.70  Aligned_cols=22  Identities=27%  Similarity=0.421  Sum_probs=20.2

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|.|.|++|+|||||+..+...
T Consensus         3 ~v~ItG~~GtGKTtl~~~i~~~   24 (189)
T d2i3ba1           3 HVFLTGPPGVGKTTLIHKASEV   24 (189)
T ss_dssp             CEEEESCCSSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            5899999999999999999865

>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.10  E-value=0.00016  Score=50.54  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+|+|+|++||||||+...|...
T Consensus         2 ~mrIvl~G~pGSGKtT~a~~La~~   25 (180)
T d1akya1           2 SIRMVLIGPPGAGKGTQAPNLQER   25 (180)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            368999999999999999999875

>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.10  E-value=9.9e-05  Score=52.21  Aligned_cols=21  Identities=33%  Similarity=0.585  Sum_probs=19.5

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|+||+|+|||||+++|...
T Consensus         3 Ivl~GPsGsGK~tl~~~L~~~   23 (190)
T d1lvga_           3 VVLSGPSGAGKSTLLKKLFQE   23 (190)
T ss_dssp             EEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHh
Confidence            789999999999999999875

>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00014  Score=54.61  Aligned_cols=22  Identities=32%  Similarity=0.518  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|+|||||++.++|-
T Consensus        64 ~vaivG~nGsGKSTLl~~i~Gl   85 (281)
T d1r0wa_          64 MLAITGSTGSGKTSLLMLILGE   85 (281)
T ss_dssp             EEEEEESTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhCC
Confidence            7999999999999999999985

>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Atu3015-like
domain: Hypothetical protein Atu3015
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.07  E-value=0.00015  Score=49.94  Aligned_cols=22  Identities=27%  Similarity=0.409  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|.|++||||||+.+.|...
T Consensus         6 iI~l~G~~GsGKSTia~~La~~   27 (176)
T d1zp6a1           6 ILLLSGHPGSGKSTIAEALANL   27 (176)
T ss_dssp             EEEEEECTTSCHHHHHHHHHTC
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            3778999999999999999875

>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Hypothetical protein PH0022, N-terminal domain
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=97.06  E-value=0.00016  Score=52.95  Aligned_cols=22  Identities=23%  Similarity=0.410  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        34 ~~~liGpsGaGKSTLl~~i~Gl   55 (239)
T d1v43a3          34 FLVLLGPSGCGKTTTLRMIAGL   55 (239)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5899999999999999999995

>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=97.05  E-value=0.00016  Score=52.87  Aligned_cols=22  Identities=23%  Similarity=0.401  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++++|+.|||||||++.+.|-
T Consensus        26 ~~~liGpnGaGKSTll~~i~Gl   47 (240)
T d2onka1          26 YCVLLGPTGAGKSVFLELIAGI   47 (240)
T ss_dssp             EEEEECCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHHcC
Confidence            5789999999999999999995

>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=97.02  E-value=0.00017  Score=50.09  Aligned_cols=22  Identities=14%  Similarity=0.231  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|.|++||||||+++.|...
T Consensus         3 iI~i~G~~GsGKsT~~~~L~~~   24 (190)
T d1khta_           3 VVVVTGVPGVGSTTSSQLAMDN   24 (190)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999764

>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Maltose transport protein MalK, N-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=96.99  E-value=0.00019  Score=52.54  Aligned_cols=22  Identities=23%  Similarity=0.391  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        31 ~~~liG~sGaGKSTll~~i~gl   52 (240)
T d1g2912          31 FMILLGPSGCGKTTTLRMIAGL   52 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCChHHHHHHHHhcC
Confidence            6899999999999999999986

>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Escherichia coli [TaxId: 562]

Probab=96.97  E-value=0.00092  Score=49.37  Aligned_cols=25  Identities=20%  Similarity=0.299  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....+++.||+|+|||++++++...
T Consensus        44 ~~~~iLL~GppGtGKT~la~~iA~~   68 (256)
T d1lv7a_          44 IPKGVLMVGPPGTGKTLLAKAIAGE   68 (256)
T ss_dssp             CCCEEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCCeEEeeCCCCCCccHHHHHHHHH
Confidence            3456999999999999999999974

>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Methionine import ATP-binding protein MetN
species: Escherichia coli [TaxId: 562]

Probab=96.96  E-value=0.00019  Score=52.52  Aligned_cols=22  Identities=32%  Similarity=0.533  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|++|||||||++.+.|-
T Consensus        33 ~~~iiG~sGsGKSTLl~~i~Gl   54 (240)
T d3dhwc1          33 IYGVIGASGAGKSTLIRCVNLL   54 (240)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHcCC
Confidence            6899999999999999999995

>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Sulfate/molybdate ABC transporter, ATP-binding protein
species: Methanosarcina acetivorans [TaxId: 2214]

Probab=96.96  E-value=0.00013  Score=53.07  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=20.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|+.|||||||++.+.|-
T Consensus        28 ~~~liGpsGaGKSTll~~l~Gl   49 (229)
T d3d31a2          28 YFVILGPTGAGKTLFLELIAGF   49 (229)
T ss_dssp             EEEEECCCTHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhcC
Confidence            6899999999999999999996

>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Gluconate kinase
domain: Gluconate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.95  E-value=0.00025  Score=48.67  Aligned_cols=24  Identities=21%  Similarity=0.457  Sum_probs=20.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..-++|+|++||||||+.+.|...
T Consensus         6 ~~iivl~G~~GsGKsT~a~~La~~   29 (171)
T d1knqa_           6 HHIYVLMGVSGSGKSAVASEVAHQ   29 (171)
T ss_dssp             SEEEEEECSTTSCHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCCHHHHHHHHHHH
Confidence            344777999999999999999875

>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Branched chain aminoacid ABC transporter
species: Thermotoga maritima, TM1139 [TaxId: 2336]

Probab=96.95  E-value=0.0002  Score=52.52  Aligned_cols=22  Identities=18%  Similarity=0.431  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|+.|||||||++.+.|-
T Consensus        34 i~~liGpnGaGKSTl~~~i~Gl   55 (240)
T d1ji0a_          34 IVTLIGANGAGKTTTLSAIAGL   55 (240)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999996

>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=96.94  E-value=0.00022  Score=49.14  Aligned_cols=23  Identities=26%  Similarity=0.280  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-|.++|.+||||||+..+|...
T Consensus         7 ~~I~l~G~~GsGKTTia~~La~~   29 (183)
T d1m8pa3           7 FTIFLTGYMNSGKDAIARALQVT   29 (183)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHH
Confidence            45779999999999999999875

>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Guanylate kinase
species: Escherichia coli [TaxId: 562]

Probab=96.93  E-value=0.00023  Score=50.90  Aligned_cols=22  Identities=41%  Similarity=0.587  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|+||+|+|||||+++|+..
T Consensus         4 livi~GPSG~GK~tl~~~L~~~   25 (205)
T d1s96a_           4 LYIVSAPSGAGKSSLIQALLKT   25 (205)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHhh
Confidence            4789999999999999999875

>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=96.92  E-value=0.0009  Score=52.43  Aligned_cols=24  Identities=21%  Similarity=0.609  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-.++++|++|+|||++++.|...
T Consensus        43 k~n~llvG~~GvGKtaiv~~la~~   66 (387)
T d1qvra2          43 KNNPVLIGEPGVGKTAIVEGLAQR   66 (387)
T ss_dssp             CCCCEEEECTTSCHHHHHHHHHHH
T ss_pred             CCCCeEECCCCCCHHHHHHHHHHH
Confidence            445799999999999999988875

>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ABC transporter involved in vitamin B12 uptake, BtuD
species: Escherichia coli [TaxId: 562]

Probab=96.92  E-value=0.00016  Score=52.71  Aligned_cols=22  Identities=23%  Similarity=0.457  Sum_probs=20.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|+.|||||||++.+.|-
T Consensus        27 i~~iiG~nGaGKSTLl~~l~Gl   48 (231)
T d1l7vc_          27 ILHLVGPNGAGKSTLLARMAGM   48 (231)
T ss_dssp             EEECBCCTTSSHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHhCC
Confidence            6899999999999999999984

>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative multidrug export ATP-binding/permease protein SAV1866
species: Staphylococcus aureus [TaxId: 1280]

Probab=96.92  E-value=0.00014  Score=53.89  Aligned_cols=23  Identities=43%  Similarity=0.514  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+++|+|++|+|||||++.+.|-
T Consensus        45 e~vaivG~sGsGKSTLl~ll~gl   67 (255)
T d2hyda1          45 ETVAFVGMSGGGKSTLINLIPRF   67 (255)
T ss_dssp             CEEEEECSTTSSHHHHHTTTTTS
T ss_pred             CEEEEECCCCCcHHHHHHHHHhc
Confidence            48999999999999999999885

>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Campylobacter jejuni [TaxId: 197]

Probab=96.91  E-value=0.00026  Score=48.49  Aligned_cols=22  Identities=32%  Similarity=0.514  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +|+++|++||||||+...|...
T Consensus         2 ~I~liG~~GsGKsTi~k~La~~   23 (161)
T d1viaa_           2 NIVFIGFMGSGKSTLARALAKD   23 (161)
T ss_dssp             CEEEECCTTSCHHHHHHHHHHH
T ss_pred             cEEEECCCCCCHHHHHHHHHHH
Confidence            5899999999999999998765

>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Putative ABC transporter TM0544
species: Thermotoga maritima [TaxId: 2336]

Probab=96.89  E-value=0.00025  Score=51.94  Aligned_cols=22  Identities=18%  Similarity=0.468  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|+.|||||||++.+.|-
T Consensus        30 i~glvG~nGaGKSTLl~~l~G~   51 (238)
T d1vpla_          30 IFGLIGPNGAGKTTTLRIISTL   51 (238)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCCHHHHHHHHhcC
Confidence            6889999999999999999996

>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Chloramphenicol phosphotransferase
domain: Chloramphenicol phosphotransferase
species: Streptomyces venezuelae [TaxId: 54571]

Probab=96.88  E-value=0.00036  Score=47.90  Aligned_cols=22  Identities=27%  Similarity=0.403  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|.|++||||||+.++|...
T Consensus         5 iI~l~G~~GsGKsTva~~L~~~   26 (178)
T d1qhxa_           5 MIILNGGSSAGKSGIVRCLQSV   26 (178)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4677799999999999999885

>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.88  E-value=0.00034  Score=49.31  Aligned_cols=24  Identities=21%  Similarity=0.361  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|+|+|+|||||||++.+|...
T Consensus         8 ~~iI~l~G~pGSGKsT~a~~La~~   31 (194)
T d3adka_           8 SKIIFVVGGPGSGKGTQCEKIVQK   31 (194)
T ss_dssp             SCEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CcEEEEECCCCCCHHHHHHHHHHH
Confidence            345889999999999999999875

>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: ATP-binding subunit of the histidine permease
species: Salmonella typhimurium [TaxId: 90371]

Probab=96.82  E-value=0.0003  Score=52.11  Aligned_cols=22  Identities=27%  Similarity=0.446  Sum_probs=20.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|+.|||||||++.+.|-
T Consensus        30 i~~iiG~sGsGKSTLl~~i~Gl   51 (258)
T d1b0ua_          30 VISIIGSSGSGKSTFLRCINFL   51 (258)
T ss_dssp             EEEEECCTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            6999999999999999999985

>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermus thermophilus [TaxId: 274]

Probab=96.79  E-value=0.0004  Score=50.60  Aligned_cols=24  Identities=17%  Similarity=0.468  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+++.||+|+||||+++.+.+.
T Consensus        35 ~~~~Ll~GPpG~GKTtla~~la~~   58 (239)
T d1ixsb2          35 LEHLLLFGPPGLGKTTLAHVIAHE   58 (239)
T ss_dssp             CCCEEEECCTTSCHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHH
Confidence            467999999999999999999875

>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Shikimate kinase (AroK)
domain: Shikimate kinase (AroK)
species: Erwinia chrysanthemi [TaxId: 556]

Probab=96.79  E-value=0.00036  Score=48.11  Aligned_cols=22  Identities=18%  Similarity=0.348  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+++|++||||||+.+.|...
T Consensus         4 ~Iil~G~~GsGKSTia~~LA~~   25 (170)
T d1e6ca_           4 PIFMVGARGCGMTTVGRELARA   25 (170)
T ss_dssp             CEEEESCTTSSHHHHHHHHHHH
T ss_pred             CEEEECCCCCCHHHHHHHHHHH
Confidence            4788999999999999999764

>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=96.79  E-value=0.00047  Score=49.48  Aligned_cols=25  Identities=24%  Similarity=0.403  Sum_probs=22.2

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...+|+|-||+||||||....|...
T Consensus         2 k~i~IaIdGp~GsGKgT~ak~La~~   26 (223)
T d1q3ta_           2 KTIQIAIDGPASSGKSTVAKIIAKD   26 (223)
T ss_dssp             CCCEEEEECSSCSSHHHHHHHHHHH
T ss_pred             CceEEEEECCCCCCHHHHHHHHHHH
Confidence            3578899999999999999999975

>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: MJ1267
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=96.78  E-value=0.00033  Score=51.80  Aligned_cols=22  Identities=36%  Similarity=0.477  Sum_probs=20.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|+|+.|||||||++.++|-
T Consensus        32 i~~liG~nGaGKSTLl~~i~Gl   53 (254)
T d1g6ha_          32 VTLIIGPNGSGKSTLINVITGF   53 (254)
T ss_dssp             EEEEECSTTSSHHHHHHHHTTS
T ss_pred             EEEEECCCCCcHHHHHHHHHCC
Confidence            5899999999999999999996

>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Uridine-cytidine kinase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.77  E-value=0.00038  Score=49.82  Aligned_cols=24  Identities=25%  Similarity=0.288  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ++-|+|.|++|||||||.+.|...
T Consensus         2 P~iIgI~G~~gSGKSTla~~L~~~   25 (213)
T d1uj2a_           2 PFLIGVSGGTASGKSSVCAKIVQL   25 (213)
T ss_dssp             CEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999988763

>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit
species: Streptococcus pyogenes [TaxId: 1314]

Probab=96.75  E-value=0.00037  Score=51.53  Aligned_cols=22  Identities=32%  Similarity=0.531  Sum_probs=20.1

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|++.|+||+|||||+.++.+.
T Consensus        34 ~ilL~GpPGtGKT~la~~la~~   55 (273)
T d1gvnb_          34 AFLLGGQPGSGKTSLRSAIFEE   55 (273)
T ss_dssp             EEEEECCTTSCTHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999999875

>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Glucose transport protein GlcV, N-terminal domain
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=96.74  E-value=0.00018  Score=52.71  Aligned_cols=22  Identities=32%  Similarity=0.620  Sum_probs=21.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++|+|++|||||||++.+.+-
T Consensus        33 ~~~iiG~sGsGKSTll~~i~gl   54 (242)
T d1oxxk2          33 RFGILGPSGAGKTTFMRIIAGL   54 (242)
T ss_dssp             EEEEECSCHHHHHHHHHHHHTS
T ss_pred             EEEEECCCCCcHHHHHHHHHcC
Confidence            7999999999999999999995

>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Holliday junction helicase RuvB
species: Thermotoga maritima [TaxId: 2336]

Probab=96.71  E-value=0.0005  Score=49.96  Aligned_cols=24  Identities=17%  Similarity=0.371  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+++.||+|+||||+++.+...
T Consensus        35 ~~~~L~~GPpGtGKT~lA~~la~~   58 (238)
T d1in4a2          35 LDHVLLAGPPGLGKTTLAHIIASE   58 (238)
T ss_dssp             CCCEEEESSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHhc
Confidence            457999999999999999999875

>d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric traffic ATPase, HP0525
species: Helicobacter pylori [TaxId: 210]

Probab=96.63  E-value=0.00053  Score=52.46  Aligned_cols=23  Identities=17%  Similarity=0.405  Sum_probs=21.0

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|.|++|+|||||+++|++.
T Consensus       167 ~nili~G~tgSGKTT~l~al~~~  189 (323)
T d1g6oa_         167 KNVIVCGGTGSGKTTYIKSIMEF  189 (323)
T ss_dssp             CCEEEEESTTSSHHHHHHHHGGG
T ss_pred             CCEEEEeeccccchHHHHHHhhh
Confidence            45999999999999999999984

>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.62  E-value=0.00022  Score=50.02  Aligned_cols=22  Identities=27%  Similarity=0.280  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|.++|.+||||||+.+.|...
T Consensus        21 vI~L~G~pGSGKTTiAk~La~~   42 (195)
T d1x6va3          21 TVWLTGLSGAGKTTVSMALEEY   42 (195)
T ss_dssp             EEEEESSCHHHHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5778999999999999999764

>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Adenylate kinase
species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]

Probab=96.62  E-value=0.00053  Score=47.65  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|.|.+||||||+++.|...
T Consensus         4 ivi~G~~GsGKTT~~~~La~~   24 (194)
T d1nksa_           4 GIVTGIPGVGKSTVLAKVKEI   24 (194)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            456899999999999999764

>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.57  E-value=0.0011  Score=48.45  Aligned_cols=26  Identities=12%  Similarity=0.231  Sum_probs=22.8

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .....+++.||+|+||||++.+++..
T Consensus        50 ~~~~~lll~GPpG~GKTt~a~~la~~   75 (253)
T d1sxja2          50 GVFRAAMLYGPPGIGKTTAAHLVAQE   75 (253)
T ss_dssp             TSCSEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCCCHHHHHHHHHHH
Confidence            34567999999999999999999985

>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.50  E-value=0.00091  Score=48.31  Aligned_cols=24  Identities=33%  Similarity=0.515  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+++.|++|+||||++..+...
T Consensus        45 ~~~lll~Gp~G~GKTtla~~iak~   68 (231)
T d1iqpa2          45 MPHLLFAGPPGVGKTTAALALARE   68 (231)
T ss_dssp             CCEEEEESCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcHHHHHHHHHHH
Confidence            456999999999999999999874

>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyribonucleoside kinase
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.48  E-value=0.00079  Score=47.30  Aligned_cols=24  Identities=21%  Similarity=0.267  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.-|+|-|..||||||+++.|...
T Consensus         9 p~~I~ieG~~GsGKTTl~~~L~~~   32 (197)
T d2vp4a1           9 PFTVLIEGNIGSGKTTYLNHFEKY   32 (197)
T ss_dssp             CEEEEEECSTTSCHHHHHHTTGGG
T ss_pred             ceEEEEECCCCCCHHHHHHHHHHH
Confidence            447999999999999999999875

>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Thermus thermophilus [TaxId: 274]

Probab=96.46  E-value=0.00078  Score=47.19  Aligned_cols=24  Identities=25%  Similarity=0.194  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.-|+|.|.+||||||+++.|...
T Consensus         3 p~IIgitG~~gSGKstva~~l~~~   26 (191)
T d1uf9a_           3 PIIIGITGNIGSGKSTVAALLRSW   26 (191)
T ss_dssp             CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred             CEEEEEECCCCCCHHHHHHHHHHC
Confidence            567889999999999999988653

>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: CMP kinase
species: Escherichia coli [TaxId: 562]

Probab=96.46  E-value=0.00095  Score=47.65  Aligned_cols=24  Identities=33%  Similarity=0.498  Sum_probs=21.5

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|-|+|.||+||||||+...|..+
T Consensus         3 ~piI~I~GppGSGKgT~ak~La~~   26 (225)
T d1ckea_           3 APVITIDGPSGAGKGTLCKAMAEA   26 (225)
T ss_dssp             SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCEEEEECCCCCCHHHHHHHHHHH
Confidence            467899999999999999999876

>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6, N-domain
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=96.39  E-value=0.0013  Score=48.26  Aligned_cols=25  Identities=28%  Similarity=0.470  Sum_probs=21.9

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ....++|.|++|+|||++++.+...
T Consensus        42 ~~~~lll~GppGtGKT~l~~~l~~~   66 (276)
T d1fnna2          42 HYPRATLLGRPGTGKTVTLRKLWEL   66 (276)
T ss_dssp             SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CCCceEEECCCCCCHHHHHHHHHHH
Confidence            3457999999999999999998874

>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.27  E-value=0.0014  Score=47.11  Aligned_cols=25  Identities=24%  Similarity=0.553  Sum_probs=21.3

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+.+++.|++|+||||++..+...
T Consensus        35 ~~~~~ll~Gp~G~GKTt~a~~la~~   59 (224)
T d1sxjb2          35 NMPHMIISGMPGIGKTTSVHCLAHE   59 (224)
T ss_dssp             CCCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCCeEEEECCCCCCchhhHHHHHHH
Confidence            3456999999999999999988764

>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Pantothenate kinase PanK
species: Escherichia coli [TaxId: 562]

Probab=96.24  E-value=0.0015  Score=49.40  Aligned_cols=26  Identities=27%  Similarity=0.230  Sum_probs=22.5

Q ss_pred             CCCCCeEEEEcCCCCCHHHHHHHHhc
Q 027757           36 KDDRPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        36 ~~~~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ...++-|+|.|++|||||||.+.|..
T Consensus        77 ~k~P~iIGIaG~sgSGKSTla~~L~~  102 (308)
T d1sq5a_          77 QRIPYIISIAGSVAVGKSTTARVLQA  102 (308)
T ss_dssp             CCCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred             CCCCEEEEEeCCCCCCCcHHHHHHHH
Confidence            34568899999999999999998875

>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C2
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.20  E-value=0.0017  Score=46.77  Aligned_cols=24  Identities=33%  Similarity=0.517  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+++.|++|+||||++..++..
T Consensus        33 ~~~lll~Gp~G~GKTtl~~~i~~~   56 (237)
T d1sxjd2          33 LPHMLFYGPPGTGKTSTILALTKE   56 (237)
T ss_dssp             CCCEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChHHHHHHHHHH
Confidence            355999999999999999999874

>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0013  Score=50.00  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...++++||||+|||.|.+++...
T Consensus        49 ~~~iLl~GPpG~GKT~lAkalA~~   72 (309)
T d1ofha_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (309)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHhhc
Confidence            346899999999999999999874

>d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: YjeE-like
domain: Hypothetical protein HI0065
species: Haemophilus influenzae [TaxId: 727]

Probab=96.17  E-value=0.0079  Score=40.64  Aligned_cols=22  Identities=18%  Similarity=0.341  Sum_probs=20.0

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|++-|+-|||||||++.++..
T Consensus        35 ii~L~G~LGaGKTtfvr~~~~~   56 (158)
T d1htwa_          35 MVYLNGDLGAGKTTLTRGMLQG   56 (158)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCccHHHHHHHHHhh
Confidence            5888999999999999999975

>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C5
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.12  E-value=0.0014  Score=47.69  Aligned_cols=24  Identities=25%  Similarity=0.432  Sum_probs=21.3

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+++.|++|+||||++.++...
T Consensus        33 ~~~lll~Gp~G~GKTt~~~~la~~   56 (252)
T d1sxje2          33 LPHLLLYGPNGTGKKTRCMALLES   56 (252)
T ss_dssp             CCCEEEECSTTSSHHHHHHTHHHH
T ss_pred             CCeEEEECCCCCCHHHHHHHHHHh
Confidence            456999999999999999998874

>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication factor C3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.10  E-value=0.0019  Score=46.42  Aligned_cols=24  Identities=38%  Similarity=0.563  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+++.|++|+||||++..+...
T Consensus        35 ~~~lLl~Gp~G~GKttl~~~la~~   58 (227)
T d1sxjc2          35 LPHLLFYGPPGTGKTSTIVALARE   58 (227)
T ss_dssp             CCCEEEECSSSSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCChhHHHHHHHHH
Confidence            446899999999999999999874

>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Archaeal ATPase SSO1545
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=96.09  E-value=0.0015  Score=47.98  Aligned_cols=23  Identities=35%  Similarity=0.498  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-|+|.|++|+|||||+.++...
T Consensus        30 ~~i~i~G~~G~GKTsLl~~~~~~   52 (283)
T d2fnaa2          30 PITLVLGLRRTGKSSIIKIGINE   52 (283)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHHH
T ss_pred             CEEEEEcCCCCcHHHHHHHHHHH
Confidence            46889999999999999998753

>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: AAA domain of cell division protein FtsH
species: Thermus thermophilus [TaxId: 274]

Probab=96.05  E-value=0.0022  Score=46.97  Aligned_cols=24  Identities=25%  Similarity=0.421  Sum_probs=21.6

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..|++.|++|+|||++++++.+.
T Consensus        42 ~~giLl~GppGtGKT~la~aia~~   65 (247)
T d1ixza_          42 PKGVLLVGPPGVGKTHLARAVAGE   65 (247)
T ss_dssp             CSEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceEEEecCCCCChhHHHHHHHHH
Confidence            446999999999999999999974

>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Adenosine-5'phosphosulfate kinase (APS kinase)
domain: Adenosine-5'phosphosulfate kinase (APS kinase)
species: Fungus (Penicillium chrysogenum) [TaxId: 5076]

Probab=95.98  E-value=0.0019  Score=45.98  Aligned_cols=25  Identities=28%  Similarity=0.258  Sum_probs=21.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...-|.+.|.+||||||+.+.|...
T Consensus        23 kg~vIwltGlsGsGKTTia~~L~~~   47 (208)
T d1m7ga_          23 RGLTIWLTGLSASGKSTLAVELEHQ   47 (208)
T ss_dssp             SCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHHH
Confidence            3456999999999999999999864

>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.96  E-value=0.0026  Score=46.86  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=21.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..+++.||+|+|||++++++...
T Consensus        38 ~~giLL~GppGtGKT~l~~ala~~   61 (258)
T d1e32a2          38 PRGILLYGPPGTGKTLIARAVANE   61 (258)
T ss_dssp             CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred             CceeEEecCCCCCchHHHHHHHHH
Confidence            456999999999999999999985

>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Phosphoribulokinase
species: Rhodobacter sphaeroides [TaxId: 1063]

Probab=95.94  E-value=0.0013  Score=49.26  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=18.1

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757           38 DRPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      ..+-|+|.|.+||||||+.++|..
T Consensus         3 k~pIIgIaG~SGSGKTTva~~l~~   26 (288)
T d1a7ja_           3 KHPIISVTGSSGAGTSTVKHTFDQ   26 (288)
T ss_dssp             TSCEEEEESCC---CCTHHHHHHH
T ss_pred             CCCEEEEECCCCCcHHHHHHHHHH
Confidence            356899999999999999998765

>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CDC6-like protein APE0152, N-terminal domain
species: Aeropyrum pernix [TaxId: 56636]

Probab=95.93  E-value=0.0011  Score=48.91  Aligned_cols=21  Identities=29%  Similarity=0.673  Sum_probs=18.2

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.+.|++|+|||++++++...
T Consensus        49 l~l~GppGtGKT~l~~~l~~~   69 (287)
T d1w5sa2          49 YGSIGRVGIGKTTLAKFTVKR   69 (287)
T ss_dssp             EECTTCCSSSHHHHHHHHHHH
T ss_pred             EEeECCCCCCHHHHHHHHHHH
Confidence            445699999999999999975

>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=95.72  E-value=0.0027  Score=44.77  Aligned_cols=22  Identities=32%  Similarity=0.421  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|-|..||||||+++.|...
T Consensus         2 lI~ieG~dGsGKST~~~~L~~~   23 (208)
T d1gsia_           2 LIAIEGVDGAGKRTLVEKLSGA   23 (208)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            4889999999999999998864

>d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.0029  Score=44.90  Aligned_cols=23  Identities=30%  Similarity=0.317  Sum_probs=20.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +-|+|.|..||||||+++.|...
T Consensus         4 ~iIgitG~igSGKStv~~~l~~~   26 (208)
T d1vhta_           4 YIVALTGGIGSGKSTVANAFADL   26 (208)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHT
T ss_pred             EEEEEECCCcCCHHHHHHHHHHC
Confidence            46889999999999999988754

>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Membrane fusion ATPase VCP/p97
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.63  E-value=0.0037  Score=46.21  Aligned_cols=24  Identities=21%  Similarity=0.346  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ...|++.|++|+|||+|++++.+.
T Consensus        41 ~~giLL~Gp~GtGKT~l~~ala~~   64 (265)
T d1r7ra3          41 SKGVLFYGPPGCGKTLLAKAIANE   64 (265)
T ss_dssp             CCEEEEBCCTTSSHHHHHHHHHHH
T ss_pred             CCeEEEECCCCCcchhHHHHHHHH
Confidence            456999999999999999999986

>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Dephospho-CoA kinase
species: Haemophilus influenzae [TaxId: 727]

Probab=95.61  E-value=0.0032  Score=44.57  Aligned_cols=23  Identities=17%  Similarity=0.241  Sum_probs=19.9

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +-|+|.|..||||||+++.|...
T Consensus         3 ~iIgITG~igSGKStv~~~l~~~   25 (205)
T d1jjva_           3 YIVGLTGGIGSGKTTIANLFTDL   25 (205)
T ss_dssp             EEEEEECSTTSCHHHHHHHHHTT
T ss_pred             EEEEEECCCCCCHHHHHHHHHHC
Confidence            46899999999999999988643

>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Phosphoribulokinase/pantothenate kinase
domain: Hypothetical protein Ygr205W
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.59  E-value=0.0047  Score=46.07  Aligned_cols=24  Identities=17%  Similarity=-0.029  Sum_probs=20.5

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhc
Q 027757           38 DRPEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~   61 (219)
                      .++-|+|.|.+|+|||||...+..
T Consensus        26 ~P~iIGi~G~qGSGKSTl~~~l~~   49 (286)
T d1odfa_          26 CPLFIFFSGPQGSGKSFTSIQIYN   49 (286)
T ss_dssp             SCEEEEEECCTTSSHHHHHHHHHH
T ss_pred             CCEEEEeECCCCCCHHHHHHHHHH
Confidence            456889999999999999987754

>d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Extracellular secretion NTPase EpsE
species: Vibrio cholerae [TaxId: 666]

Probab=95.49  E-value=0.0062  Score=47.78  Aligned_cols=22  Identities=23%  Similarity=0.329  Sum_probs=20.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -|+|.|++|+||||.+..++..
T Consensus       160 liLvtGpTGSGKSTTl~~~l~~  181 (401)
T d1p9ra_         160 IILVTGPTGSGKSTTLYAGLQE  181 (401)
T ss_dssp             EEEEECSTTSCHHHHHHHHHHH
T ss_pred             eEEEEcCCCCCccHHHHHHhhh
Confidence            4999999999999999999985

>d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Lactobacillus casei [TaxId: 1582]

Probab=95.32  E-value=0.0051  Score=42.43  Aligned_cols=24  Identities=38%  Similarity=0.396  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK   63 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~   63 (219)
                      .-|++.|++|+||||+.-.|..+.
T Consensus        15 ~gvl~~G~sG~GKStlal~l~~~g   38 (176)
T d1kkma_          15 LGVLITGDSGVGKSETALELVQRG   38 (176)
T ss_dssp             EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            358999999999999999988763

>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.32  E-value=0.0049  Score=43.28  Aligned_cols=22  Identities=18%  Similarity=0.324  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+.|.|++|+|||+|+..|+.+
T Consensus        25 v~~i~G~~GsGKT~l~l~la~~   46 (242)
T d1n0wa_          25 ITEMFGEFRTGKTQICHTLAVT   46 (242)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            5889999999999999998864

>d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Mycoplasma pneumoniae [TaxId: 2104]

Probab=95.30  E-value=0.0055  Score=42.30  Aligned_cols=24  Identities=33%  Similarity=0.457  Sum_probs=21.1

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK   63 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~   63 (219)
                      .-|++.|++|+||||+.-.|..+.
T Consensus        16 ~gvli~G~sG~GKS~lal~l~~~G   39 (177)
T d1knxa2          16 VGVLLTGRSGIGKSECALDLINKN   39 (177)
T ss_dssp             EEEEEEESSSSSHHHHHHHHHTTT
T ss_pred             EEEEEEcCCCCCHHHHHHHHHHcC
Confidence            358999999999999999998763

>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Papillomavirus large T antigen helicase domain
species: Simian virus 40 [TaxId: 10633]

Probab=95.20  E-value=0.0065  Score=46.95  Aligned_cols=24  Identities=25%  Similarity=0.386  Sum_probs=21.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..-+++.||||+|||+|+.++.+.
T Consensus       154 ~~~~~~~g~~~~gk~~~~~~~~~~  177 (362)
T d1svma_         154 KRYWLFKGPIDSGKTTLAAALLEL  177 (362)
T ss_dssp             CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             cCeEEEECCCCCCHHHHHHHHHHH
Confidence            457999999999999999998864

>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=95.18  E-value=0.0047  Score=43.84  Aligned_cols=22  Identities=32%  Similarity=0.413  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+++.|++|+||||++..+...
T Consensus        26 ~lLl~Gp~G~GKtt~a~~~a~~   47 (207)
T d1a5ta2          26 ALLIQALPGMGDDALIYALSRY   47 (207)
T ss_dssp             EEEEECCTTSCHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHh
Confidence            4999999999999999988764

>d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Escherichia coli [TaxId: 562]

Probab=95.17  E-value=0.0057  Score=43.25  Aligned_cols=21  Identities=29%  Similarity=0.417  Sum_probs=18.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|-|..||||||+++.|...
T Consensus         5 IviEG~dGsGKsT~~~~L~~~   25 (210)
T d4tmka_           5 IVIEGLEGAGKTTARNVVVET   25 (210)
T ss_dssp             EEEEECTTSCHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            778899999999999998864

>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: CED-4, NB-ARC domain
species: Caenorhabditis elegans [TaxId: 6239]

Probab=95.11  E-value=0.0055  Score=45.51  Aligned_cols=23  Identities=26%  Similarity=0.320  Sum_probs=20.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .-|+|.|.+|+|||||+..+...
T Consensus        45 ~~v~I~GmgGiGKTtLA~~v~~~   67 (277)
T d2a5yb3          45 FFLFLHGRAGSGKSVIASQALSK   67 (277)
T ss_dssp             EEEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEEECCCCCCHHHHHHHHHHh
Confidence            46889999999999999998764

>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxycytidine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.10  E-value=0.0039  Score=44.90  Aligned_cols=23  Identities=30%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..|+|-|+.||||||+++.|...
T Consensus         3 k~I~ieG~dGsGKST~~~~L~~~   25 (241)
T d1p5zb_           3 KKISIEGNIAAGKSTFVNILKQL   25 (241)
T ss_dssp             EEEEEECSTTSSHHHHHTTTGGG
T ss_pred             CEEEEECCCCCCHHHHHHHHHHH
Confidence            36899999999999999998875

>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: HslU
species: Haemophilus influenzae [TaxId: 727]

Probab=95.06  E-value=0.0061  Score=48.43  Aligned_cols=24  Identities=21%  Similarity=0.465  Sum_probs=21.1

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.+|+++||+|+|||-|+++|.+-
T Consensus        49 ksNILliGPTGvGKTlLAr~LAk~   72 (443)
T d1g41a_          49 PKNILMIGPTGVGKTEIARRLAKL   72 (443)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             cccEEEECCCCCCHHHHHHHHHHH
Confidence            347999999999999999999763

>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxyguanosine kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.02  E-value=0.007  Score=43.61  Aligned_cols=24  Identities=29%  Similarity=0.502  Sum_probs=21.0

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.-|+|=|..||||||+++.|...
T Consensus         2 pk~IviEG~~GsGKST~~~~L~~~   25 (241)
T d2ocpa1           2 PRRLSIEGNIAVGKSTFVKLLTKT   25 (241)
T ss_dssp             CEEEEEEECTTSSHHHHHHHHHHH
T ss_pred             CeEEEEECCCCCcHHHHHHHHHHH
Confidence            346899999999999999999874

>d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=94.94  E-value=0.007  Score=43.74  Aligned_cols=22  Identities=23%  Similarity=0.320  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|.|++|+|||+|.-.|+..
T Consensus        38 ~~li~G~pGsGKT~~~lq~~~~   59 (254)
T d1pzna2          38 ITEVFGEFGSGKTQLAHTLAVM   59 (254)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999988764

>d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]}

class: Alpha and beta proteins (a/b)
fold: PEP carboxykinase-like
superfamily: PEP carboxykinase-like
family: HPr kinase HprK C-terminal domain
domain: HPr kinase HprK C-terminal domain
species: Staphylococcus xylosus [TaxId: 1288]

Probab=94.93  E-value=0.0075  Score=41.28  Aligned_cols=24  Identities=29%  Similarity=0.411  Sum_probs=21.2

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKK   63 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~   63 (219)
                      .-|++.|++|+||||+.-.|..+.
T Consensus        16 ~gvli~G~sg~GKS~la~~l~~~g   39 (169)
T d1ko7a2          16 VGVLITGDSGIGKSETALELIKRG   39 (169)
T ss_dssp             EEEEEEESTTSSHHHHHHHHHHTT
T ss_pred             EEEEEEeCCCCCHHHHHHHHHHcC
Confidence            468999999999999999888763

>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.88  E-value=0.0074  Score=43.27  Aligned_cols=22  Identities=27%  Similarity=0.357  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+.|.|++|+|||+|+..|...
T Consensus        36 ~~li~G~pGsGKT~l~lq~~~~   57 (251)
T d1szpa2          36 ITELFGEFRTGKSQLCHTLAVT   57 (251)
T ss_dssp             EEEEEESTTSSHHHHHHHHTTT
T ss_pred             EEEEEcCCCCCHHHHHHHHHHH
Confidence            5889999999999999998864

>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.0074  Score=42.84  Aligned_cols=21  Identities=29%  Similarity=0.382  Sum_probs=17.8

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      |+|-|..||||||++..|...
T Consensus         6 I~ieG~dGsGKsT~~~~L~~~   26 (209)
T d1nn5a_           6 IVLEGVDRAGKSTQSRKLVEA   26 (209)
T ss_dssp             EEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHH
Confidence            777799999999988887663

>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Cell division protein MukB
species: Escherichia coli [TaxId: 562]

Probab=94.73  E-value=0.0015  Score=45.55  Aligned_cols=20  Identities=30%  Similarity=0.441  Sum_probs=17.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~   60 (219)
                      -.+|+|+.|+||||+++++.
T Consensus        26 ~tvi~G~NGsGKStil~Ai~   45 (222)
T d1qhla_          26 VTTLSGGNGAGKSTTMAAFV   45 (222)
T ss_dssp             HHHHHSCCSHHHHHHHHHHH
T ss_pred             eEEEECCCCCCHHHHHHHHH
Confidence            45678999999999999886

>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=94.39  E-value=0.012  Score=42.31  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=20.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      --++|.|++|+|||+|+..+...
T Consensus        27 sl~li~G~pGsGKT~l~~qia~~   49 (242)
T d1tf7a2          27 SIILATGATGTGKTLLVSRFVEN   49 (242)
T ss_dssp             CEEEEEECTTSSHHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHHH
Confidence            35889999999999999988875

>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ATPase subunit of magnesium chelatase, BchI
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=94.31  E-value=0.0061  Score=46.42  Aligned_cols=21  Identities=29%  Similarity=0.498  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      .|++.|++|+|||+|+.++.+
T Consensus        30 ~vLl~G~pG~GKT~lar~~~~   50 (333)
T d1g8pa_          30 GVLVFGDRGTGKSTAVRALAA   50 (333)
T ss_dssp             CEEEECCGGGCTTHHHHHHHH
T ss_pred             eEEEECCCCccHHHHHHHHHH
Confidence            699999999999999999875

>d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Deoxynucleoside monophosphate kinase
species: Bacteriophage T4 [TaxId: 10665]

Probab=94.25  E-value=0.013  Score=42.23  Aligned_cols=22  Identities=14%  Similarity=0.232  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .|+|.|..||||||+.+.|...
T Consensus         3 iIgiTG~igSGKsTva~~l~e~   24 (241)
T d1deka_           3 LIFLSGVKRSGKDTTADFIMSN   24 (241)
T ss_dssp             EEEEECCTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHh
Confidence            4899999999999999999753

>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: DNA repair protein Rad51, catalytic domain
species: Archaeon Methanococcus voltae [TaxId: 2188]

Probab=94.17  E-value=0.014  Score=41.82  Aligned_cols=22  Identities=14%  Similarity=0.175  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+.|.|++|+|||+|+..++..
T Consensus        36 l~~i~G~~G~GKT~~~l~~a~~   57 (258)
T d2i1qa2          36 VTEFAGVFGSGKTQIMHQSCVN   57 (258)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHH
Confidence            4788999999999999999864

>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: NTPase P4
species: Bacteriophage phi-12 [TaxId: 161736]

Probab=94.14  E-value=0.013  Score=44.41  Aligned_cols=21  Identities=33%  Similarity=0.583  Sum_probs=18.1

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      +++.|+||+|||.|.+++.+.
T Consensus       126 ~l~~G~pG~GKT~la~ala~~  146 (321)
T d1w44a_         126 VIVTGKGNSGKTPLVHALGEA  146 (321)
T ss_dssp             EEEECSSSSCHHHHHHHHHHH
T ss_pred             EEEECCCCccHHHHHHHHHHH
Confidence            444799999999999999975

>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.13  E-value=0.012  Score=45.79  Aligned_cols=19  Identities=32%  Similarity=0.637  Sum_probs=17.2

Q ss_pred             EEEEcCCCCCHHHHHHHHh
Q 027757           42 FAILGRSNVGKSSLINALV   60 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~   60 (219)
                      -+|+|+.|+|||+++.++.
T Consensus        28 ~~i~G~NGsGKS~ileAi~   46 (427)
T d1w1wa_          28 TSIIGPNGSGKSNMMDAIS   46 (427)
T ss_dssp             EEEECSTTSSHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHH
Confidence            5789999999999999984

>d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Chromosomal replication initiation factor DnaA
species: Aquifex aeolicus [TaxId: 63363]

Probab=94.00  E-value=0.015  Score=41.35  Aligned_cols=21  Identities=29%  Similarity=0.422  Sum_probs=19.7

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      +.|.|++|+|||-|+++++..
T Consensus        39 l~l~G~~G~GKTHLl~A~~~~   59 (213)
T d1l8qa2          39 IFIYGSVGTGKTHLLQAAGNE   59 (213)
T ss_dssp             EEEECSSSSSHHHHHHHHHHH
T ss_pred             EEEECCCCCcHHHHHHHHHHH
Confidence            889999999999999999875

>d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Meiotic recombination protein DMC1/LIM15 homolog
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.00  E-value=0.016  Score=41.64  Aligned_cols=22  Identities=23%  Similarity=0.280  Sum_probs=19.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+.|.|++|+|||+|.-.|+..
T Consensus        39 ~~~i~G~~GsGKT~lalq~~~~   60 (258)
T d1v5wa_          39 ITEAFGEFRTGKTQLSHTLCVT   60 (258)
T ss_dssp             EEEEECCTTCTHHHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHHHH
Confidence            5889999999999999999864

>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: Smc head domain
species: Thermotoga maritima [TaxId: 2336]

Probab=93.93  E-value=0.011  Score=44.16  Aligned_cols=20  Identities=40%  Similarity=0.592  Sum_probs=17.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~   60 (219)
                      --+|+|+-|+||||+++++.
T Consensus        26 lnvlvG~NgsGKS~iL~Ai~   45 (308)
T d1e69a_          26 VTAIVGPNGSGKSNIIDAIK   45 (308)
T ss_dssp             EEEEECCTTTCSTHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHH
Confidence            35889999999999999883

>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Replication protein E1 helicase domain
species: Human papillomavirus type 18 [TaxId: 333761]

Probab=93.92  E-value=0.011  Score=41.41  Aligned_cols=24  Identities=21%  Similarity=0.278  Sum_probs=20.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .--+++.|++++|||.|+++|+.-
T Consensus        53 kn~i~~~GP~~TGKS~f~~sl~~~   76 (205)
T d1tuea_          53 KNCLVFCGPANTGKSYFGMSFIHF   76 (205)
T ss_dssp             CSEEEEESCGGGCHHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHHH
Confidence            456999999999999999988874

>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: delta prime subunit of DNA polymerase III, N-domain
species: Escherichia coli [TaxId: 562]

Probab=93.91  E-value=0.019  Score=41.33  Aligned_cols=22  Identities=27%  Similarity=0.502  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+++.|++|+||||++..+...
T Consensus        36 ~~Ll~Gp~G~GKtt~a~~~~~~   57 (239)
T d1njfa_          36 AYLFSGTRGVGKTSIARLLAKG   57 (239)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             eEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999988764

>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Varicella-zoster virus [TaxId: 10335]

Probab=93.91  E-value=0.0075  Score=45.97  Aligned_cols=26  Identities=12%  Similarity=0.195  Sum_probs=22.9

Q ss_pred             CCCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           37 DDRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        37 ~~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+..+|.|=|+-|+||||+++.|...
T Consensus         3 m~~lrI~IEG~iGsGKSTl~~~L~~~   28 (331)
T d1osna_           3 MGVLRIYLDGAYGIGKTTAAEEFLHH   28 (331)
T ss_dssp             EEEEEEEEEESSSSCTTHHHHHHHHT
T ss_pred             ccceEEEEECCCCCCHHHHHHHHHHH
Confidence            34578999999999999999999875

>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpX
species: Helicobacter pylori [TaxId: 210]

Probab=93.89  E-value=0.022  Score=43.86  Aligned_cols=24  Identities=17%  Similarity=0.500  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      +..++++||+|+|||-|..+|...
T Consensus        68 ~~niLfiGPTGvGKTElAk~LA~~   91 (364)
T d1um8a_          68 KSNILLIGPTGSGKTLMAQTLAKH   91 (364)
T ss_dssp             CCCEEEECCTTSSHHHHHHHHHHH
T ss_pred             CcceeeeCCCCccHHHHHHHHHhh
Confidence            456999999999999999988753

>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpA, an Hsp100 chaperone, AAA+ modules
species: Escherichia coli [TaxId: 562]

Probab=93.86  E-value=0.02  Score=43.21  Aligned_cols=22  Identities=27%  Similarity=0.492  Sum_probs=19.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .++++||+|+|||.|...|...
T Consensus        54 ~~lf~Gp~GvGKT~lak~la~~   75 (315)
T d1r6bx3          54 SFLFAGPTGVGKTEVTVQLSKA   75 (315)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchhHHHHHHHHhh
Confidence            4889999999999999998864

>d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Gene 4 protein (g4p, DNA primase), helicase domain
species: Bacteriophage T7 [TaxId: 10760]

Probab=93.54  E-value=0.021  Score=41.92  Aligned_cols=22  Identities=18%  Similarity=0.309  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++|.|++|+|||+|+..+..+
T Consensus        37 l~vi~G~~G~GKT~~~~~la~~   58 (277)
T d1cr2a_          37 VIMVTSGSGMGKSTFVRQQALQ   58 (277)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHHh
Confidence            4788999999999999888753

>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidylate kinase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.47  E-value=0.021  Score=40.46  Aligned_cols=22  Identities=32%  Similarity=0.385  Sum_probs=19.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      =|+|-|..||||||+++.|...
T Consensus         5 ~I~iEG~DGsGKST~~~~L~~~   26 (214)
T d1tmka_           5 LILIEGLDRTGKTTQCNILYKK   26 (214)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEECCCCCcHHHHHHHHHHH
Confidence            4889999999999999988764

>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Circadian clock protein KaiC
species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]

Probab=93.30  E-value=0.024  Score=40.13  Aligned_cols=22  Identities=18%  Similarity=0.218  Sum_probs=18.4

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhc
Q 027757           40 PEFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~   61 (219)
                      --+.|.|++|+|||+|+-.++.
T Consensus        27 ~~~~I~G~~G~GKT~la~~~~~   48 (242)
T d1tf7a1          27 RSTLVSGTSGTGKTLFSIQFLY   48 (242)
T ss_dssp             SEEEEEESTTSSHHHHHHHHHH
T ss_pred             eEEEEEeCCCCCHHHHHHHHHH
Confidence            3588899999999999877654

>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Equine herpesvirus type 4 [TaxId: 10331]

Probab=93.05  E-value=0.026  Score=42.86  Aligned_cols=24  Identities=17%  Similarity=0.146  Sum_probs=21.9

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+|.|=|+-|+||||+++.|...
T Consensus         6 ~~rI~iEG~iGsGKSTl~~~L~~~   29 (333)
T d1p6xa_           6 IVRIYLDGVYGIGKSTTGRVMASA   29 (333)
T ss_dssp             EEEEEEECSTTSSHHHHHHHHHSG
T ss_pred             eEEEEEECCccCCHHHHHHHHHHH
Confidence            468999999999999999999885

>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nucleotide and nucleoside kinases
domain: Thymidine kinase
species: Herpes simplex virus type 1, different strains [TaxId: 10298]

Probab=92.69  E-value=0.03  Score=42.46  Aligned_cols=24  Identities=25%  Similarity=0.230  Sum_probs=20.8

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..+|.|=|+-|+||||+++.|...
T Consensus         4 ~lrI~IEG~iGsGKTTl~~~La~~   27 (329)
T d1e2ka_           4 LLRVYIDGPHGMGKTTTTQLLVAL   27 (329)
T ss_dssp             EEEEEECSCTTSSHHHHHHHHTC-
T ss_pred             ceEEEEECCcCCCHHHHHHHHHHH
Confidence            457999999999999999999764

>d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Escherichia coli, RepD [TaxId: 562]

Probab=92.52  E-value=0.024  Score=42.03  Aligned_cols=33  Identities=18%  Similarity=0.155  Sum_probs=20.8

Q ss_pred             EEEEeCCCCCCcccHHHHHHhccCCCcEEEEEE
Q 027757          126 LLLIDASVPPQKIDLDCANWLGRNNIPLTFVFT  158 (219)
Q Consensus       126 i~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~n  158 (219)
                      ++++|-....+.....++..+......+++++-
T Consensus       209 ~i~vDE~QD~~~~~~~~l~~~~~~~~~~~~~GD  241 (306)
T d1uaaa1         209 YLLVDEYQDTNTSQYELVKLLVGSRARFTVVGD  241 (306)
T ss_dssp             EEEESCGGGCBHHHHHHHHHHHTTTCCEEEECC
T ss_pred             HHHHHHHHHhhHHHHhhhhhcccCCCcceEeec
Confidence            667777666666666666666555556665543

>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Hexameric replicative helicase repA
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.037  Score=40.34  Aligned_cols=21  Identities=29%  Similarity=0.230  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      -.+|.|++|+|||+|+-.+..
T Consensus        31 ~~~i~G~~G~GKS~l~l~la~   51 (274)
T d1nlfa_          31 VGALVSPGGAGKSMLALQLAA   51 (274)
T ss_dssp             EEEEEESTTSSHHHHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            477999999999999988765

>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Bacterial conjugative coupling protein TrwB
species: Escherichia coli [TaxId: 562]

Probab=92.38  E-value=0.036  Score=43.33  Aligned_cols=23  Identities=26%  Similarity=0.418  Sum_probs=19.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      ..++|+|.+|+|||+++..++..
T Consensus        51 ~H~~I~G~tGsGKT~~l~~li~~   73 (433)
T d1e9ra_          51 RHLLVNGATGTGKSVLLRELAYT   73 (433)
T ss_dssp             GCEEEEECTTSSHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCcHHHHHHHHHHH
Confidence            35999999999999999877754

>d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: DEXX box DNA helicase
species: Bacillus stearothermophilus, PcrA [TaxId: 1422]

Probab=92.12  E-value=0.033  Score=41.61  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=20.7

Q ss_pred             EEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEcc
Q 027757          126 LLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKC  160 (219)
Q Consensus       126 i~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~  160 (219)
                      .+++|-.+..+.....++..+......+++++...
T Consensus       219 ~i~iDE~QD~s~~q~~~~~~l~~~~~~~~~~gD~~  253 (318)
T d1pjra1         219 YIHIDEYQDTNRAQYTLVKKLAERFQNICAVGDAD  253 (318)
T ss_dssp             EEEESSGGGCCHHHHHHHHHHHTTTCCEEEEECGG
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHhhcceeeecccc
Confidence            44556555555555566666555566677777654

>d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Rep 40 protein helicase domain
species: Adeno-associated virus 2, AAV2 [TaxId: 10804]

Probab=91.92  E-value=0.062  Score=39.42  Aligned_cols=25  Identities=20%  Similarity=0.465  Sum_probs=21.4

Q ss_pred             CCCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           38 DRPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        38 ~~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+--+.+.|++++|||+|++.+..-
T Consensus       103 k~n~~~l~G~~~tGKS~f~~~i~~~  127 (267)
T d1u0ja_         103 KRNTIWLFGPATTGKTNIAEAIAHT  127 (267)
T ss_dssp             TCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred             ccEEEEEEcCCCCCHHHHHHHHHHH
Confidence            3557899999999999999988873

>d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Transcription termination factor Rho, ATPase domain
species: Escherichia coli [TaxId: 562]

Probab=91.86  E-value=0.053  Score=40.19  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=20.8

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcC
Q 027757           40 PEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      =|++|+|++|+|||+|+..+..+
T Consensus        44 Qr~~I~g~~g~GKT~l~~~i~~~   66 (289)
T d1xpua3          44 QRGLIVAPPKAGKTMLLQNIAQS   66 (289)
T ss_dssp             CEEEEEECSSSSHHHHHHHHHHH
T ss_pred             CeeeEeCCCCCCHHHHHHHHHHH
Confidence            38999999999999999988874

>d1g3qa_ c.37.1.10 (A:) Cell division regulator MinD {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Cell division regulator MinD
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=91.55  E-value=0.21  Score=35.06  Aligned_cols=65  Identities=12%  Similarity=0.152  Sum_probs=40.8

Q ss_pred             CeEEEEeCCCCCCCCCCcchhhhHHHHHHHHhhccCCccEEEEEEeCCCCCCcccHHHHHHhccCCCcEE-EEEEccccc
Q 027757           85 KSWYIVDLPGYGFAKAPDVTRMDWSSFTKGYFLNRESLVGVLLLIDASVPPQKIDLDCANWLGRNNIPLT-FVFTKCDKM  163 (219)
Q Consensus        85 ~~~~liDtpg~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i-iv~nK~D~~  163 (219)
                      ..++++|+|+-..            ......+..   +|.++++...+......-.+....+++.+.|++ +|+|+.+..
T Consensus       112 ~d~IiiD~~~~~~------------~~~~~~l~~---aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~giv~N~~~~~  176 (237)
T d1g3qa_         112 FDFILIDCPAGLQ------------LDAMSAMLS---GEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS  176 (237)
T ss_dssp             CSEEEEECCSSSS------------HHHHHHHTT---CSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred             CCEEEEccccccc------------ccchhhhhh---hhcccccccccceecchhhHHHHHHhhhhhhhhhhhhcccccc
Confidence            4789999987321            111222333   899999998763222222355666667888876 899999865


Q ss_pred             c
Q 027757          164 K  164 (219)
Q Consensus       164 ~  164 (219)
                      .
T Consensus       177 ~  177 (237)
T d1g3qa_         177 D  177 (237)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: ClpB, AAA+ modules
species: Thermus thermophilus [TaxId: 274]

Probab=90.41  E-value=0.071  Score=40.08  Aligned_cols=22  Identities=36%  Similarity=0.632  Sum_probs=18.8

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -++++|++|+|||.+...|...
T Consensus        55 ~~lf~Gp~G~GKt~lak~la~~   76 (315)
T d1qvra3          55 SFLFLGPTGVGKTELAKTLAAT   76 (315)
T ss_dssp             EEEEBSCSSSSHHHHHHHHHHH
T ss_pred             EEEEECCCcchHHHHHHHHHHH
Confidence            4678899999999999988764

>d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Tandem AAA-ATPase domain
domain: Exodeoxyribonuclease V alpha chain (RecD)
species: Escherichia coli [TaxId: 562]

Probab=90.24  E-value=0.085  Score=40.41  Aligned_cols=22  Identities=27%  Similarity=0.401  Sum_probs=17.7

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~   60 (219)
                      ..-++|.|++|+|||+++..++
T Consensus       163 ~~~~vI~G~pGTGKTt~i~~~l  184 (359)
T d1w36d1         163 RRISVISGGPGTGKTTTVAKLL  184 (359)
T ss_dssp             BSEEEEECCTTSTHHHHHHHHH
T ss_pred             CCeEEEEcCCCCCceehHHHHH
Confidence            3568999999999999885543

>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Clostridium pasteurianum [TaxId: 1501]

Probab=89.08  E-value=0.13  Score=37.26  Aligned_cols=20  Identities=35%  Similarity=0.624  Sum_probs=17.4

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~   60 (219)
                      +|+|.|..|+||||+.-.|.
T Consensus         3 ~Iai~gKGGvGKTT~a~nLA   22 (269)
T d1cp2a_           3 QVAIYGKGGIGKSTTTQNLT   22 (269)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCcCCHHHHHHHHH
Confidence            68899999999999987655

>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: gamma subunit of DNA polymerase III, N-domain
species: Thermotoga maritima [TaxId: 2336]

Probab=88.61  E-value=1.2  Score=30.55  Aligned_cols=24  Identities=13%  Similarity=-0.083  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      .+.+++.|++|+|||++...+...
T Consensus        15 ~~~~l~~G~~g~gk~~~a~~l~~~   38 (198)
T d2gnoa2          15 GISILINGEDLSYPREVSLELPEY   38 (198)
T ss_dssp             SEEEEEECSSSSHHHHHHHHHHHH
T ss_pred             CceEEEECCCCCCHHHHHHHHHHH
Confidence            568999999999999999988863

>d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Clostridium acetobutylicum [TaxId: 1488]

Probab=88.60  E-value=0.25  Score=32.31  Aligned_cols=40  Identities=10%  Similarity=-0.060  Sum_probs=26.7

Q ss_pred             ccEEEEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757          122 LVGVLLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus       122 ~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      .|  ++.+|-.+..+......+..+...++++++.+-..|=.
T Consensus        81 ~d--vI~IDE~QFf~d~~~~~~~~l~~~g~~Viv~GLd~Df~  120 (141)
T d1xx6a1          81 TE--VIAIDEVQFFDDEIVEIVNKIAESGRRVICAGLDMDFR  120 (141)
T ss_dssp             CS--EEEECSGGGSCTHHHHHHHHHHHTTCEEEEEECSBCTT
T ss_pred             cc--EEEEeehhhccccHHHHHHhheeCCcEEEEEEeccccc
Confidence            55  45567666555433455666666789999988888854

>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of beta subunit of F1 ATP synthase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.28  E-value=0.16  Score=37.19  Aligned_cols=22  Identities=32%  Similarity=0.641  Sum_probs=19.9

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~l~~~i~~~   91 (276)
T d2jdid3          70 KIGLFGGAGVGKTVLIMELINN   91 (276)
T ss_dssp             EEEEEECTTSSHHHHHHHHHHH
T ss_pred             EEEeeCCCCCCHHHHHHHHHHH
Confidence            8999999999999998888754

>d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Escherichia coli [TaxId: 562]

Probab=88.03  E-value=0.16  Score=37.03  Aligned_cols=22  Identities=23%  Similarity=0.366  Sum_probs=19.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+.+.|++|+|||+|+-.++..
T Consensus        56 itei~G~~gsGKTtl~l~~~~~   77 (263)
T d1u94a1          56 IVEIYGPESSGKTTLTLQVIAA   77 (263)
T ss_dssp             EEEEECSTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCCcHHHHHHHHHHHH
Confidence            5888999999999999888875

>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Extended AAA-ATPase domain
domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain
species: Aquifex aeolicus [TaxId: 63363]

Probab=87.70  E-value=0.16  Score=36.55  Aligned_cols=21  Identities=29%  Similarity=0.425  Sum_probs=18.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      -|+|.|++|+||+.+...+-.
T Consensus        25 pvlI~Ge~GtGK~~~A~~ih~   45 (247)
T d1ny5a2          25 PVLITGESGVGKEVVARLIHK   45 (247)
T ss_dssp             CEEEECSTTSSHHHHHHHHHH
T ss_pred             CEEEECCCCcCHHHHHHHHHH
Confidence            489999999999999998865

>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RNA helicase
domain: HCV helicase domain
species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]

Probab=87.66  E-value=0.13  Score=33.10  Aligned_cols=21  Identities=19%  Similarity=0.153  Sum_probs=16.5

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      ..+|.+++|+|||.++-.+..
T Consensus        10 ~~ll~apTGsGKT~~~~~~~~   30 (136)
T d1a1va1          10 VAHLHAPTGSGKSTKVPAAYA   30 (136)
T ss_dssp             EEEEECCTTSCTTTHHHHHHH
T ss_pred             EEEEEeCCCCCHHHHHHHHHH
Confidence            457799999999988765543

>d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ATP sulfurylase C-terminal domain
domain: ATP sulfurylase C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=87.60  E-value=0.16  Score=32.18  Aligned_cols=24  Identities=17%  Similarity=0.112  Sum_probs=21.4

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHhcC
Q 027757           39 RPEFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+.|.+-|..|+||||+.++|...
T Consensus         6 gf~i~~tg~~~~gk~~ia~al~~~   29 (122)
T d1g8fa3           6 GFSIVLGNSLTVSREQLSIALLST   29 (122)
T ss_dssp             CEEEEECTTCCSCHHHHHHHHHHH
T ss_pred             ceEEEEeCCCCCCHHHHHHHHHHH
Confidence            367999999999999999999875

>d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Ureaplasma urealyticum [TaxId: 2130]

Probab=86.93  E-value=0.31  Score=31.67  Aligned_cols=38  Identities=16%  Similarity=-0.017  Sum_probs=26.5

Q ss_pred             EEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757          126 LLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus       126 i~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ++.+|-.+..+..-..+...+...++++++.+-..|-.
T Consensus        82 vI~IDE~QFf~d~i~~~~~~~~~~g~~Viv~GLd~Df~  119 (139)
T d2b8ta1          82 VIGIDEVQFFDDRICEVANILAENGFVVIISGLDKNFK  119 (139)
T ss_dssp             EEEECSGGGSCTHHHHHHHHHHHTTCEEEEECCSBCTT
T ss_pred             EEEechhhhcchhHHHHHHHHHhcCceEEEEEeccccc
Confidence            56677776655433455666667889999998888854

>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=86.68  E-value=0.24  Score=36.14  Aligned_cols=22  Identities=32%  Similarity=0.468  Sum_probs=17.2

Q ss_pred             CCeEEEEcCCCCCHHHHHHHHh
Q 027757           39 RPEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        39 ~~~v~i~G~~g~GKSslin~l~   60 (219)
                      +.-|.+.|..|+||||+.-.+.
T Consensus         8 p~~i~~sGKGGVGKTTvaa~lA   29 (296)
T d1ihua1           8 PPYLFFTGKGGVGKTSISCATA   29 (296)
T ss_dssp             CSEEEEECSTTSSHHHHHHHHH
T ss_pred             CeEEEEECCCcChHHHHHHHHH
Confidence            4457789999999999766554

>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Dethiobiotin synthetase
species: Escherichia coli [TaxId: 562]

Probab=86.09  E-value=0.25  Score=34.13  Aligned_cols=22  Identities=27%  Similarity=0.468  Sum_probs=18.5

Q ss_pred             CeEEEEcCC-CCCHHHHHHHHhc
Q 027757           40 PEFAILGRS-NVGKSSLINALVR   61 (219)
Q Consensus        40 ~~v~i~G~~-g~GKSslin~l~~   61 (219)
                      .|+.|.|-. |+||||+.-.|..
T Consensus         2 ~~~~i~gt~~GVGKTtvs~~La~   24 (224)
T d1byia_           2 KRYFVTGTDTEVGKTVASCALLQ   24 (224)
T ss_dssp             EEEEEEESSTTSCHHHHHHHHHH
T ss_pred             ceEEEEECCCCccHHHHHHHHHH
Confidence            478999995 9999999887764

>d2afhe1 c.37.1.10 (E:1-289) Nitrogenase iron protein {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Nitrogenase iron protein
species: Azotobacter vinelandii [TaxId: 354]

Probab=85.86  E-value=0.26  Score=36.04  Aligned_cols=20  Identities=40%  Similarity=0.665  Sum_probs=16.7

Q ss_pred             eEEEEcCCCCCHHHHHHHHh
Q 027757           41 EFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~   60 (219)
                      +|+|.|..|+||||+.-.|.
T Consensus         4 ~IaisgKGGVGKTT~a~NLA   23 (289)
T d2afhe1           4 QCAIYGKGGIGKSTTTQNLV   23 (289)
T ss_dssp             EEEEEECTTSSHHHHHHHHH
T ss_pred             EEEEECCCCCCHHHHHHHHH
Confidence            57889999999999777654

>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Nitrogenase iron protein-like
domain: Arsenite-translocating ATPase ArsA
species: Escherichia coli [TaxId: 562]

Probab=85.72  E-value=0.28  Score=35.47  Aligned_cols=21  Identities=24%  Similarity=0.553  Sum_probs=15.6

Q ss_pred             CeEEEEcCCCCCHHHHHHHHh
Q 027757           40 PEFAILGRSNVGKSSLINALV   60 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~   60 (219)
                      .-|++.|..|+||||+.-.|.
T Consensus        21 ~iii~sGKGGVGKTT~a~nLA   41 (279)
T d1ihua2          21 GLIMLMGKGGVGKTTMAAAIA   41 (279)
T ss_dssp             EEEEEECSTTSSHHHHHHHHH
T ss_pred             EEEEEECCCCCCHHHHHHHHH
Confidence            345556999999999866554

>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Cow (Bos taurus) [TaxId: 9913]

Probab=84.46  E-value=0.24  Score=36.44  Aligned_cols=22  Identities=23%  Similarity=0.327  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      |++|+|.+|+|||+|+..+..+
T Consensus        70 r~~If~~~g~GKt~ll~~~~~~   91 (285)
T d2jdia3          70 RELIIGDRQTGKTSIAIDTIIN   91 (285)
T ss_dssp             BCEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEeecCCCCChHHHHHHHHHh
Confidence            8999999999999998877754

>d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: RecA protein, ATPase-domain
species: Deinococcus radiodurans [TaxId: 1299]

Probab=82.55  E-value=0.41  Score=34.84  Aligned_cols=22  Identities=32%  Similarity=0.382  Sum_probs=19.6

Q ss_pred             eEEEEcCCCCCHHHHHHHHhcC
Q 027757           41 EFAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~~   62 (219)
                      -+-+.|++++|||+|+-.++..
T Consensus        59 itei~G~~~sGKT~l~l~~~~~   80 (268)
T d1xp8a1          59 ITEIYGPESGGKTTLALAIVAQ   80 (268)
T ss_dssp             EEEEEESTTSSHHHHHHHHHHH
T ss_pred             EEEEecCCccchHHHHHHHHHH
Confidence            5788999999999999888875

>d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: Type II thymidine kinase
domain: Thymidine kinase, TK1, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.28  E-value=0.36  Score=31.12  Aligned_cols=37  Identities=8%  Similarity=-0.000  Sum_probs=24.5

Q ss_pred             EEEEeCCCCCCcccHHHHHHhccCCCcEEEEEEccccc
Q 027757          126 LLLIDASVPPQKIDLDCANWLGRNNIPLTFVFTKCDKM  163 (219)
Q Consensus       126 i~v~d~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~  163 (219)
                      ++.+|-.+..... .....++...++++++.+-..|-.
T Consensus        76 ~I~IDEaQFf~dl-~~~~~~~~~~~~~Viv~GLd~Df~  112 (133)
T d1xbta1          76 VIGIDEGQFFPDI-VEFCEAMANAGKTVIVAALDGTFQ  112 (133)
T ss_dssp             EEEESSGGGCTTH-HHHHHHHHHTTCEEEEECCSBCTT
T ss_pred             eEEeehhHHHHHH-HHHHHHHHhcCCcEEEEEeccccc
Confidence            4667776655422 345566666789999888887743

>d1c9ka_ c.37.1.11 (A:) Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Adenosylcobinamide kinase/adenosylcobinamide phosphate guanylyltransferase CobU
species: Salmonella typhimurium [TaxId: 90371]

Probab=81.60  E-value=0.56  Score=31.88  Aligned_cols=21  Identities=29%  Similarity=0.423  Sum_probs=18.9

Q ss_pred             EEEEcCCCCCHHHHHHHHhcC
Q 027757           42 FAILGRSNVGKSSLINALVRK   62 (219)
Q Consensus        42 v~i~G~~g~GKSslin~l~~~   62 (219)
                      ++|+|...+|||.+.+.+...
T Consensus         2 iLVtGGarSGKS~~AE~l~~~   22 (180)
T d1c9ka_           2 ILVTGGARSGKSRHAEALIGD   22 (180)
T ss_dssp             EEEEECTTSSHHHHHHHHHCS
T ss_pred             EEEECCCCccHHHHHHHHHhc
Confidence            689999999999999998764

>d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: ABC transporter ATPase domain-like
domain: DNA repair protein MutS, the C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.78  E-value=0.55  Score=33.35  Aligned_cols=27  Identities=22%  Similarity=0.183  Sum_probs=21.3

Q ss_pred             CeEEEEcCCCCCHHHHHHHHhcCcccc
Q 027757           40 PEFAILGRSNVGKSSLINALVRKKELA   66 (219)
Q Consensus        40 ~~v~i~G~~g~GKSslin~l~~~~~~~   66 (219)
                      .-++|.|+-.+||||++..+.-.-..+
T Consensus        42 ~~~iiTGpN~~GKSt~lk~i~l~~~la   68 (234)
T d1wb9a2          42 RMLIITGPNMGGKSTYMRQTALIALMA   68 (234)
T ss_dssp             CEEEEECCTTSSHHHHHHHHHHHHHHH
T ss_pred             eEEEEeccCchhhHHHHHHHHHHHHHH
Confidence            347899999999999999887653333

>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: P-loop containing nucleoside triphosphate hydrolases
superfamily: P-loop containing nucleoside triphosphate hydrolases
family: RecA protein-like (ATPase-domain)
domain: Central domain of alpha subunit of F1 ATP synthase
species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]

Probab=80.33  E-value=0.35  Score=35.40  Aligned_cols=21  Identities=19%  Similarity=0.352  Sum_probs=18.3

Q ss_pred             eEEEEcCCCCCHHHHHHHHhc
Q 027757           41 EFAILGRSNVGKSSLINALVR   61 (219)
Q Consensus        41 ~v~i~G~~g~GKSslin~l~~   61 (219)
                      |++|+|.+|+|||+|+..+..
T Consensus        69 r~~Ifg~~g~GKt~l~~~~~~   89 (276)
T d1fx0a3          69 RELIIGDRQTGKTAVATDTIL   89 (276)
T ss_dssp             BCBEEESSSSSHHHHHHHHHH
T ss_pred             eEeeccCCCCChHHHHHHHHh
Confidence            899999999999999876544