Citrus Sinensis ID: 028349

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210
MDPRLCNGEYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
cccccEEccccccccccHHHHHHHHHcccccccccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHcccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccEEEEEccccHHHHHHHHHHHHHHHcHHHHHHcccccEEEEEEcccccccc
cccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccEEEEEEcccccccEEEEEEEHHHHHHHHHHHHHHHHHHcHHHHHHcccccEEEEEEcccccEEc
mdprlcngeyFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLeawksgnsqdFGKLISAsglssiynyecgseplIQLNEILqrapgvfgarfsgagfrGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSavlickpgdcarvi
MDPRLCNGEYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
MDPRLCNGEYFHLILFSSFVilqlimiliffqTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPgvfgarfsgagfrgCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
****LCNGEYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD*****
*DPRLCNGEYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
MDPRLCNGEYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
**PRLCNGEYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MDPRLCNGEYFHLILFSSFVILQLIMILIFFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query210 2.2.26 [Sep-21-2011]
Q8VYG2424 Galacturonokinase OS=Arab yes no 0.690 0.341 0.584 1e-50
Q9ZB10388 Galactokinase OS=Streptoc yes no 0.395 0.213 0.385 6e-09
Q03BB8388 Galactokinase OS=Lactobac yes no 0.571 0.309 0.298 6e-09
O84902387 Galactokinase OS=Lactobac yes no 0.485 0.263 0.323 6e-09
B3W7I5388 Galactokinase OS=Lactobac yes no 0.485 0.262 0.323 7e-09
Q5LYY7388 Galactokinase OS=Streptoc yes no 0.395 0.213 0.385 8e-09
Q03JS8388 Galactokinase OS=Streptoc yes no 0.395 0.213 0.385 1e-08
Q88SE8387 Galactokinase OS=Lactobac yes no 0.285 0.155 0.45 2e-08
Q9RGS1388 Galactokinase OS=Staphylo yes no 0.628 0.340 0.295 4e-08
Q1WUZ4387 Galactokinase OS=Lactobac yes no 0.385 0.209 0.382 5e-08
>sp|Q8VYG2|GALAK_ARATH Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1 Back     alignment and function desciption
 Score =  199 bits (506), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 104/178 (58%), Positives = 120/178 (67%), Gaps = 33/178 (18%)

Query: 33  TVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINL 92
            VE  VYEAHK+EL+P LAKRAEHYF+EN RV KG                         
Sbjct: 279 NVEHAVYEAHKHELKPVLAKRAEHYFSENMRVIKG------------------------- 313

Query: 93  WIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARF 152
                    EAW SGN ++FGKLISASGLSSI NYECG+EPLIQL +IL +APGV+GARF
Sbjct: 314 --------REAWASGNLEEFGKLISASGLSSIENYECGAEPLIQLYKILLKAPGVYGARF 365

Query: 153 SGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
           SGAGFRGCCLA VDA++AE AASYV+ EY + QPE A+ LN    VLIC+ GD ARV+
Sbjct: 366 SGAGFRGCCLAFVDAEKAEAAASYVKDEYEKAQPEFANNLNGGKPVLICEAGDAARVL 423
Sugar-1-kinase with a strict substrate specificity for the alpha-anomeric configuration of D-galacturonic acid (D-GalA) and ATP. Involved in the biosynthesis of UDP-galacturonic acid (UDP-GalA) from the salvaged GalA that is released during growth-dependent cell wall restructuring.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 4
>sp|Q9ZB10|GAL1_STRTR Galactokinase OS=Streptococcus thermophilus GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q03BB8|GAL1_LACC3 Galactokinase OS=Lactobacillus casei (strain ATCC 334) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|O84902|GAL1_LACCA Galactokinase OS=Lactobacillus casei GN=galK PE=3 SV=1 Back     alignment and function description
>sp|B3W7I5|GAL1_LACCB Galactokinase OS=Lactobacillus casei (strain BL23) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q5LYY7|GAL1_STRT1 Galactokinase OS=Streptococcus thermophilus (strain CNRZ 1066) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q03JS8|GAL1_STRTD Galactokinase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q88SE8|GAL1_LACPL Galactokinase OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q9RGS1|GAL1_STACT Galactokinase OS=Staphylococcus carnosus (strain TM300) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q1WUZ4|GAL1_LACS1 Galactokinase OS=Lactobacillus salivarius (strain UCC118) GN=galK PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
372995399 431 GALK [Morus alba var. multicaulis] 0.704 0.343 0.607 4e-54
225462522 436 PREDICTED: galacturonokinase [Vitis vini 0.704 0.339 0.596 7e-52
356513221 431 PREDICTED: galacturonokinase-like [Glyci 0.704 0.343 0.596 4e-51
356527722 933 PREDICTED: uncharacterized protein LOC10 0.695 0.156 0.581 4e-50
357520677 437 Galactokinase [Medicago truncatula] gi|3 0.704 0.338 0.580 2e-49
22330971 424 galactokinase [Arabidopsis thaliana] gi| 0.690 0.341 0.584 6e-49
297833852 424 GHMP kinase family protein [Arabidopsis 0.690 0.341 0.584 7e-49
449463918 437 PREDICTED: galacturonokinase-like [Cucum 0.690 0.331 0.561 7e-49
255546650 431 galactokinase, putative [Ricinus communi 0.690 0.336 0.539 2e-43
242077114 439 hypothetical protein SORBIDRAFT_06g02791 0.690 0.330 0.528 1e-42
>gi|372995399|gb|AEY11272.1| GALK [Morus alba var. multicaulis] Back     alignment and taxonomy information
 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 110/181 (60%), Positives = 126/181 (69%), Gaps = 33/181 (18%)

Query: 30  FFQTVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCF 89
               +E E Y+ HKN+L+P +AKRAEHYF+EN RV KG+ F                   
Sbjct: 284 LLSDIEPEAYQRHKNKLQPNIAKRAEHYFSENLRVNKGLEF------------------- 324

Query: 90  INLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFG 149
                         W SGN +D G+LI+ASGLSSI NYECGSEPLIQL EIL RAPGVFG
Sbjct: 325 --------------WASGNLEDLGRLITASGLSSIKNYECGSEPLIQLYEILLRAPGVFG 370

Query: 150 ARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARV 209
           ARFSGAGFRGCCLALVD++ A+EAAS+VR EY +LQPELASQLN DSAVLIC+ GDCARV
Sbjct: 371 ARFSGAGFRGCCLALVDSNHADEAASFVRREYRKLQPELASQLNQDSAVLICEAGDCARV 430

Query: 210 I 210
           I
Sbjct: 431 I 431

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462522|ref|XP_002264528.1| PREDICTED: galacturonokinase [Vitis vinifera] gi|296090474|emb|CBI40670.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513221|ref|XP_003525312.1| PREDICTED: galacturonokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|356527722|ref|XP_003532457.1| PREDICTED: uncharacterized protein LOC100793652 [Glycine max] Back     alignment and taxonomy information
>gi|357520677|ref|XP_003630627.1| Galactokinase [Medicago truncatula] gi|355524649|gb|AET05103.1| Galactokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|22330971|ref|NP_187681.2| galactokinase [Arabidopsis thaliana] gi|75304441|sp|Q8VYG2.1|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gi|18175773|gb|AAL59925.1| putative galactokinase [Arabidopsis thaliana] gi|20465755|gb|AAM20366.1| putative galactokinase [Arabidopsis thaliana] gi|215276406|gb|ACJ65066.1| D-galacturonic acid-1-P kinase [Arabidopsis thaliana] gi|332641423|gb|AEE74944.1| galactokinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297833852|ref|XP_002884808.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330648|gb|EFH61067.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|449463918|ref|XP_004149677.1| PREDICTED: galacturonokinase-like [Cucumis sativus] gi|449507367|ref|XP_004163011.1| PREDICTED: galacturonokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255546650|ref|XP_002514384.1| galactokinase, putative [Ricinus communis] gi|223546481|gb|EEF47980.1| galactokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242077114|ref|XP_002448493.1| hypothetical protein SORBIDRAFT_06g027910 [Sorghum bicolor] gi|241939676|gb|EES12821.1| hypothetical protein SORBIDRAFT_06g027910 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query210
TAIR|locus:2075730424 GalAK "galacturonic acid kinas 0.528 0.261 0.594 8.5e-43
TAIR|locus:2075730 GalAK "galacturonic acid kinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 332 (121.9 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
 Identities = 66/111 (59%), Positives = 78/111 (70%)

Query:   100 GLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPXXXXXXXXXXXXXX 159
             G EAW SGN ++FGKLISASGLSSI NYECG+EPLIQL +IL +AP              
Sbjct:   313 GREAWASGNLEEFGKLISASGLSSIENYECGAEPLIQLYKILLKAPGVYGARFSGAGFRG 372

Query:   160 CCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
             CCLA VDA++AE AASYV+ EY + QPE A+ LN    VLIC+ GD ARV+
Sbjct:   373 CCLAFVDAEKAEAAASYVKDEYEKAQPEFANNLNGGKPVLICEAGDAARVL 423
GO:0004335 "galactokinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006012 "galactose metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA
GO:0046396 "D-galacturonate metabolic process" evidence=IDA
GO:0047912 "galacturonokinase activity" evidence=IDA
GO:0005829 "cytosol" evidence=IDA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007137001
SubName- Full=Chromosome undetermined scaffold_184, whole genome shotgun sequence; (489 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025477001
RecName- Full=Galactose-1-phosphate uridylyltransferase; EC=2.7.7.12; (332 aa)
•    •• 0.660
GSVIVG00020644001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (376 aa)
      • 0.424

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
PLN02865423 PLN02865, PLN02865, galactokinase 3e-77
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 1e-20
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 2e-14
TIGR00131386 TIGR00131, gal_kin, galactokinase 6e-14
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 2e-11
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 6e-10
PRK05101382 PRK05101, PRK05101, galactokinase; Provisional 7e-09
PLN02521497 PLN02521, PLN02521, galactokinase 6e-06
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 1e-04
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information 
 Score =  237 bits (606), Expect = 3e-77
 Identities = 107/177 (60%), Positives = 122/177 (68%), Gaps = 33/177 (18%)

Query: 34  VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLW 93
           VE EVYEAHK +LE  LA+RAEHYF+EN RV KG                          
Sbjct: 280 VEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKG-------------------------- 313

Query: 94  IYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 153
                  +EAW SGN ++FGKLISASGLSSI NYECG EPLIQL EIL +APGV+GARFS
Sbjct: 314 -------VEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEILLKAPGVYGARFS 366

Query: 154 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
           GAGFRGCC+A VDA+ AEEAAS+VR EY + QPELAS +N D  VLIC+ GDCARV+
Sbjct: 367 GAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL 423

Length = 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 210
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
PLN02865423 galactokinase 100.0
PTZ00290468 galactokinase; Provisional 100.0
PRK05101382 galactokinase; Provisional 100.0
PLN02521497 galactokinase 100.0
PRK05322387 galactokinase; Provisional 100.0
PRK00555363 galactokinase; Provisional 100.0
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.98
PRK03817351 galactokinase; Provisional 99.95
KOG0631489 consensus Galactokinase [Carbohydrate transport an 99.92
PTZ00298328 mevalonate kinase; Provisional 99.59
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.57
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.55
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.54
PRK03926302 mevalonate kinase; Provisional 99.52
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.39
PLN02677387 mevalonate kinase 99.38
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.38
COG2605333 Predicted kinase related to galactokinase and meva 99.34
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 98.87
PRK01212301 homoserine kinase; Provisional 98.87
PLN02451370 homoserine kinase 98.79
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 98.31
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 98.26
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 98.07
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.03
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.99
PTZ00299336 homoserine kinase; Provisional 97.67
PRK01123282 shikimate kinase; Provisional 97.6
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.45
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 97.35
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.34
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 97.26
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.9
COG1907312 Predicted archaeal sugar kinases [General function 96.87
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 96.81
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.73
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.32
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 96.28
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 96.21
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 95.65
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 93.3
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 90.48
>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=4.8e-41  Score=307.99  Aligned_cols=166  Identities=32%  Similarity=0.465  Sum_probs=155.7

Q ss_pred             ccCcchhhhhhhchH-------HHHHHHccc--cccCCCCHHHHHHhhccC--CHHHhhhhhhhhhhhhHHHHHHHhhhh
Q 028349            5 LCNGEYFHLILFSSF-------VILQLIMIL--IFFQTVEEEVYEAHKNEL--EPTLAKRAEHYFTENRRVAKGIAFLTW   73 (210)
Q Consensus         5 ~~~~~~~~~~~~~~~-------~~l~~~~g~--~~l~~v~~~~~~~~~~~l--~~~~~~Ra~Hv~~E~~Rv~~~~~~l~~   73 (210)
                      +=|++++|.+-.|+|       +..-+.|++  ..|||+++++++++.+.+  +|..+||++|+++||+||+++      
T Consensus       213 I~ns~vkr~la~seYn~Rr~ece~A~~~l~~~~~~L~d~~~~~~~~~~~~i~~~~~~~rRa~hvv~En~Rvl~a------  286 (390)
T COG0153         213 IVNSNVKRELADSEYNERRAECEEAAEFLGVSIKSLRDVTDEEFAALQAEIEVDPKIARRARHVVTENQRVLEA------  286 (390)
T ss_pred             EecCCCccccchhHHHHHHHHHHHHHHHHHHhhhhhhhcCHHHHHhhhhhcccchHHHHHHHHHHhHHHHHHHH------
Confidence            458899999999999       346667788  999999999999999988  488999999999999999999      


Q ss_pred             hHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEEc
Q 028349           74 SFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS  153 (210)
Q Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmt  153 (210)
                                                 ++||+++|+++||+||++||.|||++|+|||||+|+||++|+...|++|||||
T Consensus       287 ---------------------------~~Al~~~dl~~fG~Lm~~SH~slrddyevt~pElD~lve~a~~~~G~~GaRmT  339 (390)
T COG0153         287 ---------------------------AKALRSGDLTEFGELMNESHESLRDDYEVTCPELDTLVEIALAAGGAYGARMT  339 (390)
T ss_pred             ---------------------------HHHHHcCCHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHcCCcccceec
Confidence                                       88999999999999999999999999999999999999999977888999999


Q ss_pred             cCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349          154 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI  210 (210)
Q Consensus       154 GgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~  210 (210)
                      |||||||+|+|+|.+.+++|++.+.+.|++.+       |+++.+|+++|++|++++
T Consensus       340 GaGfGGc~IaLv~~~~v~~~~e~v~~~y~~~~-------g~k~~~yv~~~~~G~~~~  389 (390)
T COG0153         340 GAGFGGCVIALVPNDDVEAVAEAVAEEYEKVT-------GLKAAFYVVEASQGAGVC  389 (390)
T ss_pred             CCCCCceEEEEechhhHHHHHHHHHHhHHhhc-------CccccEEEEeccCCcccc
Confidence            99999999999999999999999999999864       899999999999999874

>PLN02865 galactokinase Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query210
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 2e-35
1pie_A419 Galactokinase; galactose, galactosemia, transferas 6e-35
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 8e-34
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 2e-21
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 7e-18
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 3e-12
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 2e-10
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 4e-10
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 3e-08
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 2e-07
3k17_A365 LIN0012 protein; protein structure initiative II(P 4e-04
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
 Score =  127 bits (322), Expect = 2e-35
 Identities = 42/177 (23%), Positives = 68/177 (38%), Gaps = 44/177 (24%)

Query: 34  VEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLW 93
           V+ E  EA ++ +     +RA H   E RR A+                           
Sbjct: 265 VQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAA------------------------- 299

Query: 94  IYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFS 153
                    A + G+ + FG+L+  S  S   +YE     L QL E     PGV+G+R +
Sbjct: 300 --------AALRRGDYRAFGRLMVESHRSLRDDYEVSCPELDQLVEAALAVPGVYGSRMT 351

Query: 154 GAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
           G GF GC + L++A  A  A  +++  Y              +   + +  D A+V+
Sbjct: 352 GGGFGGCTVTLLEASAAPHAMRHIQEHY-----------GGTATFYLSQAADGAKVL 397
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query210
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 100.0
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.95
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.94
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.94
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.93
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.79
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.78
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.78
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.62
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.59
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.59
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.58
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.55
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.53
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.43
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.38
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.03
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 98.82
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 98.75
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.4
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 98.15
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.86
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 97.72
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 97.55
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 97.25
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.05
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 95.39
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=100.00  E-value=1.2e-35  Score=281.44  Aligned_cols=127  Identities=30%  Similarity=0.527  Sum_probs=115.9

Q ss_pred             HHhhhhhhhhhhhhHHHHHHHhhhhhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCC-------CHHHHHHHHHHHHH
Q 028349           49 TLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSG-------NSQDFGKLISASGL  121 (210)
Q Consensus        49 ~~~~Ra~Hv~~E~~Rv~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~g-------D~~~fG~Lm~eSh~  121 (210)
                      ++++||+|||+||+||.++                                 ++||+++       |++.||+||++||.
T Consensus       381 ~l~~RA~HVv~E~~Rv~~~---------------------------------~~al~~~~~~~~~~d~~~lg~lm~~sH~  427 (520)
T 3v2u_C          381 KLYQRAKHVYSESLRVLKA---------------------------------LKMMTSATFHTDEDFFTDFGRLMNESQA  427 (520)
T ss_dssp             CHHHHHHHHHHHHHHHHHH---------------------------------HHHHTCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH---------------------------------HHHHHcCCcccchhHHHHHHHHHHHHHH
Confidence            4899999999999999999                                 7788886       59999999999999


Q ss_pred             HhhhhcCCCChhHHHHHHHHHhcCCCeeEEEccCCccceeEEEe---ccccHHHHHHHHHHHhHhh-chhhhhhcCCCce
Q 028349          122 SSIYNYECGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALV---DADRAEEAASYVRSEYFEL-QPELASQLNADSA  197 (210)
Q Consensus       122 SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRmtGgGfGGcvIaLv---~~~~~~~~~~~l~~~y~~~-~p~~~~~~~~~~~  197 (210)
                      |||++|+|||||+|.|+++|++ .|++|+||||||||||+|+|+   +++.++++++.|.+.|+++ +|.+.+. +++++
T Consensus       428 slr~~~~vS~peld~lv~~a~~-~Ga~GarlTGaG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~-~~~~~  505 (520)
T 3v2u_C          428 SCDKLYECSCIETNQICSIALA-NGSFGSRLTGAGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDE-ELKDA  505 (520)
T ss_dssp             HHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECSSCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHH-HHHHH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEecCCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccc-cCCCe
Confidence            9999999999999999999987 899999999999999999999   8899999999999999866 4554443 56789


Q ss_pred             EEEeecCCceecC
Q 028349          198 VLICKPGDCARVI  210 (210)
Q Consensus       198 ~~~~~p~~Ga~v~  210 (210)
                      +|+|+|++||+|+
T Consensus       506 ~~~~~p~~GA~i~  518 (520)
T 3v2u_C          506 IIVSKPALGTCLY  518 (520)
T ss_dssp             EEECCCCCCSEEE
T ss_pred             EEEecCCCceEEe
Confidence            9999999999973
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 210
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 9e-23
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 5e-20
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 4e-18
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 2e-10
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 3e-06
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 88.6 bits (219), Expect = 9e-23
 Identities = 45/176 (25%), Positives = 63/176 (35%), Gaps = 40/176 (22%)

Query: 35  EEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGIAFLTWSFEIILEIHVYLVLCFINLWI 94
            EE         + TL KRA H   EN R                               
Sbjct: 48  NEEFDANTDLIGDETLIKRARHAVYENNRTKIAQ-------------------------- 81

Query: 95  YFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARFSG 154
                  +A+ +GN   FG+L++AS  S   +YE     L  L E  Q+  GV GAR +G
Sbjct: 82  -------KAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARMTG 134

Query: 155 AGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI 210
           AGF GC +ALV  D        V   Y E        +   ++  + + G  +  +
Sbjct: 135 AGFGGCAIALVAHDNVSAFRKAVGQVYEE-------VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query210
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 100.0
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 100.0
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.83
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.81
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.64
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 98.05
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 95.67
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 88.34
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.7e-46  Score=312.34  Aligned_cols=166  Identities=29%  Similarity=0.412  Sum_probs=156.7

Q ss_pred             ccCcchhhhhhhchHH-----------HHHHHccccccCCCCHHHHHHhhccC-CHHHhhhhhhhhhhhhHHHHHHHhhh
Q 028349            5 LCNGEYFHLILFSSFV-----------ILQLIMILIFFQTVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGIAFLT   72 (210)
Q Consensus         5 ~~~~~~~~~~~~~~~~-----------~l~~~~g~~~l~~v~~~~~~~~~~~l-~~~~~~Ra~Hv~~E~~Rv~~~~~~l~   72 (210)
                      ++|+.+.|.+..|+|.           .+++++|.++|+|++++++.+.++.| ++.+++||+||++||.||.++     
T Consensus         6 i~dS~v~h~L~~s~Yn~R~~ec~~a~~~v~~~~~~~~L~~v~~~~l~~~~~~l~d~~~~rRa~Hvv~En~Rv~~a-----   80 (183)
T d1piea2           6 IMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIA-----   80 (183)
T ss_dssp             EEECCCCCCTTCHHHHHHHHHHHHHHHHHHHHCCCSSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHH-----
T ss_pred             EEeCCCCcCcCcchhHHHHHHHHHHHHHHHHhcCcchHhhhcHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHh-----
Confidence            6799999999999993           25678999999999999999999998 678999999999999999999     


Q ss_pred             hhHHHHHHHHHHHHHHhhhhhhhhccchHHHhhCCCHHHHHHHHHHHHHHhhhhcCCCChhHHHHHHHHHhcCCCeeEEE
Q 028349           73 WSFEIILEIHVYLVLCFINLWIYFIGSGLEAWKSGNSQDFGKLISASGLSSIYNYECGSEPLIQLNEILQRAPGVFGARF  152 (210)
Q Consensus        73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~AL~~gD~~~fG~Lm~eSh~SLr~~yeVS~pelD~Lve~A~~~~Ga~GaRm  152 (210)
                                                  ++||+++|++.||+||++||.||+++|++||||+|.|++++++..|++||||
T Consensus        81 ----------------------------~~al~~~d~~~~G~lm~~Sh~sl~~~~evs~~elD~Lv~~a~~~~G~~GaRm  132 (183)
T d1piea2          81 ----------------------------QKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAETAQKQAGVLGARM  132 (183)
T ss_dssp             ----------------------------HHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHHSTTEEEEEE
T ss_pred             ----------------------------hhhhhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhCCCeEeec
Confidence                                        8899999999999999999999999999999999999999987679999999


Q ss_pred             ccCCccceeEEEeccccHHHHHHHHHHHhHhhchhhhhhcCCCceEEEeecCCceecC
Q 028349          153 SGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI  210 (210)
Q Consensus       153 tGgGfGGcvIaLv~~~~~~~~~~~l~~~y~~~~p~~~~~~~~~~~~~~~~p~~Ga~v~  210 (210)
                      ||||||||+|+|++.+.+++|.++|.+.|+++       +|..|.+|+++|++||++|
T Consensus       133 tGgGfGGcvialv~~~~~~~~~~~i~~~y~~~-------~g~~~~~~~~~~~~Ga~~i  183 (183)
T d1piea2         133 TGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV-------VGYPASFYVAQIGSGSTKL  183 (183)
T ss_dssp             CSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred             cccCCCceEEEEecHHHHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCceeC
Confidence            99999999999999999999999999999986       4999999999999999986
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure