Citrus Sinensis ID: 029418

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190---
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW
ccccEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHccHHHHHHcccccccccccccccccccccHHHcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEEccEEEEcHHHHHHHHHHHccccEEEEEcccccccccccEEEEEEEccccccccc
cccEEEEEEEccccEcccccccccccccccccccHHHHHHHccccccHHHHcccccEcccccccccccccccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHccccccccHHHcccccHccEEEEEEccccEEccHHHHHHHHHHccccEEEEEEEccccccccccEEEEEEccHHHHHHcc
MNDFTFIALVkgniffplfpglliwqsSHSCGQVIIEALLSAHLIgaseralmpGILSISTlvwphlctnsRQVVKMSAtgirkpgfespaiklpshptydlkGVVKLALAedagdrgdvtcmatiPLDMEVEAHFLAKEDGIIAGIALAEMIFhevdpslkvewslkdgdhvhkglqfgkvsgkprkinsfw
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPgfespaiklpshptYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHkglqfgkvsgkprkinsfw
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW
***FTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQF**************
**DFTFIALVKGNIFFPLFPGLLIW**********IEALLSAHLIGASERALMPGIL*****V****CT**********************IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW
MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW
*NDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSAT********SPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MNDFTFIALVKGNIFFPLFPGLLIWQSSHSCGQVIIEALLSAHLIGASERALMPGILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKINSFW
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query193 2.2.26 [Sep-21-2011]
P77938 296 Probable nicotinate-nucle yes no 0.492 0.320 0.35 4e-10
P30819 282 Nicotinate-nucleotide pyr yes no 0.487 0.333 0.34 8e-07
>sp|P77938|NADC_RHORU Probable nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Rhodospirillum rubrum GN=nadC PE=3 SV=1 Back     alignment and function desciption
 Score = 64.7 bits (156), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 35/100 (35%), Positives = 52/100 (52%), Gaps = 5/100 (5%)

Query: 95  PSHPT-----YDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIAL 149
           P+HP      + +   V+ ALAED G  GD+T  ATIP      A F+A++ GI+AG+  
Sbjct: 3   PNHPVAALSPFAIDEAVRRALAEDLGRAGDITSTATIPAATRAHARFVARQPGILAGLGC 62

Query: 150 AEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
           A   F  +D ++     L+DG  +  G    +V+G  R I
Sbjct: 63  ARSAFALLDDTVTFTTPLEDGAEIAAGQTVAEVAGAARTI 102
Involved in the catabolism of quinolinic acid (QA).
Rhodospirillum rubrum (taxid: 1085)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 1EC: 9
>sp|P30819|NADC_PSEAE Nicotinate-nucleotide pyrophosphorylase [carboxylating] OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=nadC PE=3 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
255570096 353 Nicotinate-nucleotide pyrophosphorylase 0.709 0.388 0.712 3e-51
356530754 377 PREDICTED: probable nicotinate-nucleotid 0.704 0.360 0.702 2e-47
363807606 377 uncharacterized protein LOC100776131 [Gl 0.611 0.312 0.766 2e-46
359472633 363 PREDICTED: probable nicotinate-nucleotid 0.611 0.325 0.75 1e-45
217072004 374 unknown [Medicago truncatula] 0.611 0.315 0.75 2e-45
224101821 329 predicted protein [Populus trichocarpa] 0.585 0.343 0.773 3e-45
297817722 348 hypothetical protein ARALYDRAFT_484052 [ 0.694 0.385 0.664 4e-45
388495338217 unknown [Medicago truncatula] 0.611 0.543 0.75 7e-45
111035808 350 putative quinolinate phosphirobosyltrans 0.704 0.388 0.671 7e-45
18379203 348 quinolinate phoshoribosyltransferase [Ar 0.694 0.385 0.671 1e-44
>gi|255570096|ref|XP_002526010.1| Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis] gi|223534657|gb|EEF36350.1| Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 99/139 (71%), Positives = 112/139 (80%), Gaps = 2/139 (1%)

Query: 53  MPGILSISTLVWPHLCTNSRQVVKMSATGIRKPG--FESPAIKLPSHPTYDLKGVVKLAL 110
           M  +   S L  PH  T SR++V+MSA   R P   F+S  IK PSHPTYDLKGV+KLAL
Sbjct: 1   MSAVTFNSLLTLPHFLTTSRRIVRMSAIDTRNPSTLFQSMTIKPPSHPTYDLKGVIKLAL 60

Query: 111 AEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDG 170
           AEDAGDRGDVTC+AT+P +MEVEA+FLAKEDGIIAGIALAEM+FHEVDPSL VEWS KDG
Sbjct: 61  AEDAGDRGDVTCIATVPSEMEVEAYFLAKEDGIIAGIALAEMLFHEVDPSLTVEWSRKDG 120

Query: 171 DHVHKGLQFGKVSGKPRKI 189
           D+VHKGLQFGKVSG+   I
Sbjct: 121 DYVHKGLQFGKVSGRAHNI 139

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class: N/A

Phylum: Streptophyta

Superkingdom:

>gi|356530754|ref|XP_003533945.1| PREDICTED: probable nicotinate-nucleotide pyrophosphorylase [carboxylating]-like [Glycine max] Back     alignment and taxonomy information
>gi|363807606|ref|NP_001242666.1| uncharacterized protein LOC100776131 [Glycine max] gi|255641879|gb|ACU21208.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359472633|ref|XP_002284233.2| PREDICTED: probable nicotinate-nucleotide pyrophosphorylase [carboxylating] [Vitis vinifera] Back     alignment and taxonomy information
>gi|217072004|gb|ACJ84362.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|224101821|ref|XP_002312433.1| predicted protein [Populus trichocarpa] gi|222852253|gb|EEE89800.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297817722|ref|XP_002876744.1| hypothetical protein ARALYDRAFT_484052 [Arabidopsis lyrata subsp. lyrata] gi|297322582|gb|EFH53003.1| hypothetical protein ARALYDRAFT_484052 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|388495338|gb|AFK35735.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|111035808|emb|CAH04306.1| putative quinolinate phosphirobosyltransferase [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|18379203|ref|NP_565259.1| quinolinate phoshoribosyltransferase [Arabidopsis thaliana] gi|16323163|gb|AAL15316.1| At2g01350/F10A8.23 [Arabidopsis thaliana] gi|20197586|gb|AAD14535.2| NADC homolog [Arabidopsis thaliana] gi|21436023|gb|AAM51589.1| At2g01350/F10A8.23 [Arabidopsis thaliana] gi|26450814|dbj|BAC42515.1| putative nicotinate-nucleotide pyrophosphorylase [Arabidopsis thaliana] gi|330250346|gb|AEC05440.1| quinolinate phoshoribosyltransferase [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query193
TAIR|locus:2038791 348 QPT "quinolinate phoshoribosyl 0.694 0.385 0.671 3.5e-43
TIGR_CMR|CBU_0098 274 CBU_0098 "nicotinate-nucleotid 0.445 0.313 0.329 1.4e-08
TIGR_CMR|GSU_1936 276 GSU_1936 "nicotinate-nucleotid 0.424 0.297 0.313 8.6e-07
TIGR_CMR|CHY_2372 283 CHY_2372 "nicotinate-nucleotid 0.440 0.300 0.333 8.2e-06
TIGR_CMR|DET_1382 285 DET_1382 "nicotinate-nucleotid 0.383 0.259 0.32 2.1e-05
TIGR_CMR|BA_4661 277 BA_4661 "nicotinate-nucleotide 0.373 0.259 0.397 4.7e-05
TIGR_CMR|SPO_3245 288 SPO_3245 "nicotinate-nucleotid 0.538 0.361 0.298 0.00017
TAIR|locus:2038791 QPT "quinolinate phoshoribosyltransferase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
 Identities = 90/134 (67%), Positives = 103/134 (76%)

Query:    56 ILSISTLVWPHLCTNSRQVVKMSATGIRKPGFESPAIKLPSHPTYDLKGVVKLALAEDAG 115
             ++S+S  + P      R  VKMSA+  +  G  S  IK PSHPTYDLK V+KLALAEDAG
Sbjct:     1 MISVSRFLSPQFYAIPRSFVKMSASATQTAGEVSMGIKPPSHPTYDLKAVIKLALAEDAG 60

Query:   116 DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGDHVHK 175
               GDVTCMATIP DMEVEA+FLAKEDGI+AG+ALA+MIF  VDPSLKVEW  KDGD+VHK
Sbjct:    61 HTGDVTCMATIPFDMEVEAYFLAKEDGIVAGVALADMIFEHVDPSLKVEWMRKDGDYVHK 120

Query:   176 GLQFGKVSGKPRKI 189
             GL+FGKVSG   KI
Sbjct:   121 GLKFGKVSGNAHKI 134
GO:0003824 "catalytic activity" evidence=IEA
GO:0004514 "nicotinate-nucleotide diphosphorylase (carboxylating) activity" evidence=IEA;IGI;ISS;IMP
GO:0009435 "NAD biosynthetic process" evidence=IEA;IGI;IMP
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016763 "transferase activity, transferring pentosyl groups" evidence=IEA
GO:0019363 "pyridine nucleotide biosynthetic process" evidence=IEA
TIGR_CMR|CBU_0098 CBU_0098 "nicotinate-nucleotide pyrophosphorylase" [Coxiella burnetii RSA 493 (taxid:227377)] Back     alignment and assigned GO terms
TIGR_CMR|GSU_1936 GSU_1936 "nicotinate-nucleotide pyrophosphorylase" [Geobacter sulfurreducens PCA (taxid:243231)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2372 CHY_2372 "nicotinate-nucleotide pyrophosphorylase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms
TIGR_CMR|DET_1382 DET_1382 "nicotinate-nucleotide pyrophosphorylase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|BA_4661 BA_4661 "nicotinate-nucleotide pyrophosphorylase, carboxylating" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3245 SPO_3245 "nicotinate-nucleotide pyrophosphorylase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
PLN02716 308 PLN02716, PLN02716, nicotinate-nucleotide diphosph 3e-56
cd01572 268 cd01572, QPRTase, Quinolinate phosphoribosyl trans 1e-28
cd01568 269 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl 1e-22
COG0157 280 COG0157, NadC, Nicotinate-nucleotide pyrophosphory 1e-20
pfam0274988 pfam02749, QRPTase_N, Quinolinate phosphoribosyl t 1e-19
PRK06106 281 PRK06106, PRK06106, nicotinate-nucleotide pyrophos 8e-15
TIGR00078 265 TIGR00078, nadC, nicotinate-nucleotide pyrophospho 3e-14
PRK06543 281 PRK06543, PRK06543, nicotinate-nucleotide pyrophos 8e-14
PRK08072 277 PRK08072, PRK08072, nicotinate-nucleotide pyrophos 2e-13
PRK05742 277 PRK05742, PRK05742, nicotinate-nucleotide pyrophos 2e-12
PRK08385 278 PRK08385, PRK08385, nicotinate-nucleotide pyrophos 1e-11
PRK07896 289 PRK07896, PRK07896, nicotinate-nucleotide pyrophos 1e-11
PRK07428 288 PRK07428, PRK07428, nicotinate-nucleotide pyrophos 2e-07
PRK05848 273 PRK05848, PRK05848, nicotinate-nucleotide pyrophos 6e-06
PRK06978 294 PRK06978, PRK06978, nicotinate-nucleotide pyrophos 7e-06
cd00516 281 cd00516, PRTase_typeII, Phosphoribosyltransferase 2e-05
PRK09016 296 PRK09016, PRK09016, quinolinate phosphoribosyltran 3e-05
PRK06096 284 PRK06096, PRK06096, molybdenum transport protein M 9e-05
>gnl|CDD|178318 PLN02716, PLN02716, nicotinate-nucleotide diphosphorylase (carboxylating) Back     alignment and domain information 
 Score =  179 bits (456), Expect = 3e-56
 Identities = 73/104 (70%), Positives = 85/104 (81%)

Query: 86  GFESPAIKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIA 145
              + AI  PSHPTYD++ V+KLALAEDAGDRGDVTC+ATIP DME EA FLAK DG++A
Sbjct: 3   AEMAMAIPPPSHPTYDIEAVIKLALAEDAGDRGDVTCLATIPGDMEAEATFLAKADGVLA 62

Query: 146 GIALAEMIFHEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
           GIALA+M+F EVDPSLKVEW+  DGD VHKGL+FGKV+G    I
Sbjct: 63  GIALADMVFEEVDPSLKVEWAAIDGDFVHKGLKFGKVTGPAHSI 106

Length = 308
>gnl|CDD|238806 cd01572, QPRTase, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|238802 cd01568, QPRTase_NadC, Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>gnl|CDD|223235 COG0157, NadC, Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|217214 pfam02749, QRPTase_N, Quinolinate phosphoribosyl transferase, N-terminal domain Back     alignment and domain information
>gnl|CDD|180402 PRK06106, PRK06106, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|232814 TIGR00078, nadC, nicotinate-nucleotide pyrophosphorylase Back     alignment and domain information
>gnl|CDD|180612 PRK06543, PRK06543, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|181221 PRK08072, PRK08072, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180230 PRK05742, PRK05742, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236255 PRK08385, PRK08385, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236125 PRK07896, PRK07896, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|236017 PRK07428, PRK07428, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|180286 PRK05848, PRK05848, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|235900 PRK06978, PRK06978, nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>gnl|CDD|238286 cd00516, PRTase_typeII, Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>gnl|CDD|181612 PRK09016, PRK09016, quinolinate phosphoribosyltransferase; Validated Back     alignment and domain information
>gnl|CDD|180397 PRK06096, PRK06096, molybdenum transport protein ModD; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 193
PLN02716 308 nicotinate-nucleotide diphosphorylase (carboxylati 99.89
COG0157 280 NadC Nicotinate-nucleotide pyrophosphorylase [Coen 99.89
PRK06106 281 nicotinate-nucleotide pyrophosphorylase; Provision 99.88
PRK07428 288 nicotinate-nucleotide pyrophosphorylase; Provision 99.87
PRK06543 281 nicotinate-nucleotide pyrophosphorylase; Provision 99.87
PRK06559 290 nicotinate-nucleotide pyrophosphorylase; Provision 99.87
PRK06978 294 nicotinate-nucleotide pyrophosphorylase; Provision 99.87
PRK08072 277 nicotinate-nucleotide pyrophosphorylase; Provision 99.86
PRK07896 289 nicotinate-nucleotide pyrophosphorylase; Provision 99.86
TIGR01334 277 modD putative molybdenum utilization protein ModD. 99.85
PRK06096 284 molybdenum transport protein ModD; Provisional 99.85
PRK05742 277 nicotinate-nucleotide pyrophosphorylase; Provision 99.85
cd01572 268 QPRTase Quinolinate phosphoribosyl transferase (QA 99.85
PF0274988 QRPTase_N: Quinolinate phosphoribosyl transferase, 99.85
PRK09016 296 quinolinate phosphoribosyltransferase; Validated 99.84
cd01573 272 modD_like ModD; Quinolinate phosphoribosyl transfe 99.84
cd01568 269 QPRTase_NadC Quinolinate phosphoribosyl transferas 99.83
PRK08385 278 nicotinate-nucleotide pyrophosphorylase; Provision 99.83
TIGR00078 265 nadC nicotinate-nucleotide pyrophosphorylase. Syno 99.82
PRK05848 273 nicotinate-nucleotide pyrophosphorylase; Provision 99.82
KOG3008 300 consensus Quinolinate phosphoribosyl transferase [ 99.65
PRK08662 343 nicotinate phosphoribosyltransferase; Reviewed 99.45
cd00516 281 PRTase_typeII Phosphoribosyltransferase (PRTase) t 99.11
cd01571 302 NAPRTase_B Nicotinate phosphoribosyltransferase (N 99.03
PRK07188 352 nicotinate phosphoribosyltransferase; Provisional 98.83
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 93.99
cd01570 327 NAPRTase_A Nicotinate phosphoribosyltransferase (N 92.69
PRK09243 464 nicotinate phosphoribosyltransferase; Validated 91.07
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 90.69
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 90.24
PRK0674883 hypothetical protein; Validated 90.18
PF0783175 PYNP_C: Pyrimidine nucleoside phosphorylase C-term 88.63
cd01567 343 NAPRTase_PncB Nicotinate phosphoribosyltransferase 87.83
TIGR02644405 Y_phosphoryl pyrimidine-nucleoside phosphorylase. 86.37
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 85.5
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 84.66
PRK05820440 deoA thymidine phosphorylase; Reviewed 81.3
COG0213435 DeoA Thymidine phosphorylase [Nucleotide transport 80.04
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating) Back     alignment and domain information 
Probab=99.89  E-value=9e-23  Score=182.53  Aligned_cols=105  Identities=68%  Similarity=1.041  Sum_probs=100.0

Q ss_pred             CCCCcCCCCCChhhHHHHHHHHHhhhcC-CCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEE
Q 029418           88 ESPAIKLPSHPTYDLKGVVKLALAEDAG-DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWS  166 (193)
Q Consensus        88 ~~~~~~~p~~p~~~L~~~I~~aL~EDig-~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~  166 (193)
                      ..+.+.++.+|+..+++.|++||+||+| + ||+||.++++++..++++|+|||+||+||++++.++|+.+|++++++|+
T Consensus         5 ~~~~~~~~~~~~~~~~~~i~~~L~ED~~~~-gDlTt~~~~~~~~~~~a~i~ake~gvlaG~~~a~~vf~~l~~~~~v~~~   83 (308)
T PLN02716          5 MAMAIPPPSHPTYDIEAVIKLALAEDAGDR-GDVTCLATIPGDMEAEATFLAKADGVLAGIALADMVFEEVDPSLKVEWA   83 (308)
T ss_pred             cccccccccCChHHHHHHHHHHHHHhCCCC-CCCCcccccCCCCeEEEEEEeCCCEEEECHHHHHHHHHHcCCCeEEEEE
Confidence            3567788889988899999999999999 6 9999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCeeecCCEEEEEEeChhhhcccC
Q 029418          167 LKDGDHVHKGLQFGKVSGKPRKINSFW  193 (193)
Q Consensus       167 v~DGd~V~kGdvIleV~G~ArsLL~aE  193 (193)
                      ++||+.|++|++|++++|++++||++|
T Consensus        84 ~~dG~~v~~G~~i~~v~G~a~~il~~E  110 (308)
T PLN02716         84 AIDGDFVHKGLKFGKVTGPAHSILVAE  110 (308)
T ss_pred             eCCCCEecCCCEEEEEEECHHHHHHHH
Confidence            999999999999999999999999987

>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism] Back     alignment and domain information
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR01334 modD putative molybdenum utilization protein ModD Back     alignment and domain information
>PRK06096 molybdenum transport protein ModD; Provisional Back     alignment and domain information
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PRK09016 quinolinate phosphoribosyltransferase; Validated Back     alignment and domain information
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport Back     alignment and domain information
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes Back     alignment and domain information
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase Back     alignment and domain information
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional Back     alignment and domain information
>KOG3008 consensus Quinolinate phosphoribosyl transferase [Nucleotide transport and metabolism] Back     alignment and domain information
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed Back     alignment and domain information
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD Back     alignment and domain information
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B Back     alignment and domain information
>PRK07188 nicotinate phosphoribosyltransferase; Provisional Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A Back     alignment and domain information
>PRK09243 nicotinate phosphoribosyltransferase; Validated Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ] Back     alignment and domain information
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family Back     alignment and domain information
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>PRK05820 deoA thymidine phosphorylase; Reviewed Back     alignment and domain information
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
1x1o_A 286 Crystal Structure Of Project Id Tt0268 From Thermus 4e-08
3gnn_A 298 Crystal Structure Of Nicotinate-Nucleotide Pyrophos 3e-04
1qap_A 296 Quinolinic Acid Phosphoribosyltransferase With Boun 3e-04
3l0g_A 300 Crystal Structure Of Nicotinate-Nucleotide Pyrophos 6e-04
>pdb|1X1O|A Chain A, Crystal Structure Of Project Id Tt0268 From Thermus Thermophilus Hb8 Length = 286 Back     alignment and structure 
Iteration: 1

 Score = 54.3 bits (129), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 31/80 (38%), Positives = 46/80 (57%), Gaps = 1/80 (1%)
Query: 110 LAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKD 169
           L ED G +GD+T +  +P D+E EA  LAKE G++AG+ +AE +F   DP       + +
Sbjct: 22  LREDLG-QGDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVFALADPRTAFTPLVAE 80
Query: 170 GDHVHKGLQFGKVSGKPRKI 189
           G  V +G +  +V G  R I
Sbjct: 81  GARVAEGTEVARVRGPLRGI 100
>pdb|3GNN|A Chain A, Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase From Burkholderi Pseudomallei Length = 298 Back     alignment and structure
>pdb|1QAP|A Chain A, Quinolinic Acid Phosphoribosyltransferase With Bound Quinolinic Acid Length = 296 Back     alignment and structure
>pdb|3L0G|A Chain A, Crystal Structure Of Nicotinate-Nucleotide Pyrophosphorylase From Ehrlichia Chaffeensis At 2.05a Resolution Length = 300 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query193
1x1o_A 286 Nicotinate-nucleotide pyrophosphorylase; transfera 1e-28
3l0g_A 300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 4e-28
3tqv_A 287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 1e-27
3gnn_A 298 Nicotinate-nucleotide pyrophosphorylase; decode bi 1e-27
1qpo_A 284 Quinolinate acid phosphoribosyl transferase; type 2e-27
1qap_A 296 Quinolinic acid phosphoribosyltransferase; glycosy 1e-25
3paj_A 320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 3e-25
2b7n_A 273 Probable nicotinate-nucleotide pyrophosphorylase; 8e-24
2jbm_A 299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 2e-22
1o4u_A 285 Type II quinolic acid phosphoribosyltransferase; s 5e-21
3c2e_A 294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 7e-21
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} Length = 286 Back     alignment and structure
 Score =  106 bits (268), Expect = 1e-28
 Identities = 32/95 (33%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 95  PSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIF 154
            +     L+  ++  L ED G  GD+T +  +P D+E EA  LAKE G++AG+ +AE +F
Sbjct: 7   EALWQGGLEEALRAWLREDLGQ-GDLTSLLVVPEDLEGEAVILAKEGGVLAGLWVAERVF 65

Query: 155 HEVDPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
              DP       + +G  V +G +  +V G  R I
Sbjct: 66  ALADPRTAFTPLVAEGARVAEGTEVARVRGPLRGI 100
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Length = 300 Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Length = 287 Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Length = 298 Back     alignment and structure
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Length = 284 Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Length = 296 Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Length = 320 Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Length = 273 Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Length = 299 Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Length = 285 Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Length = 294 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
3l0g_A 300 Nicotinate-nucleotide pyrophosphorylase; ssgcid, N 99.87
1x1o_A 286 Nicotinate-nucleotide pyrophosphorylase; transfera 99.87
3tqv_A 287 Nicotinate-nucleotide pyrophosphorylase; glycosylt 99.86
3paj_A 320 Nicotinate-nucleotide pyrophosphorylase, carboxyl; 99.83
1qpo_A 284 Quinolinate acid phosphoribosyl transferase; type 99.83
3gnn_A 298 Nicotinate-nucleotide pyrophosphorylase; decode bi 99.83
1o4u_A 285 Type II quinolic acid phosphoribosyltransferase; s 99.82
1qap_A 296 Quinolinic acid phosphoribosyltransferase; glycosy 99.79
2b7n_A 273 Probable nicotinate-nucleotide pyrophosphorylase; 99.78
2jbm_A 299 Nicotinate-nucleotide pyrophosphorylase; NAD, enzy 99.77
3c2e_A 294 Nicotinate-nucleotide pyrophosphorylase; qprtase, 99.75
2i1o_A 398 Nicotinate phosphoribosyltransferase; ZIN ION, zin 98.93
2i14_A 395 Nicotinate-nucleotide pyrophosphorylase; ligand bi 98.93
2f7f_A 494 Nicotinate phosphoribosyltransferase, putative; st 97.01
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 89.41
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 89.37
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 89.09
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 88.34
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 88.07
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 87.35
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 86.24
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 86.08
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 85.96
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 85.86
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 85.46
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 85.34
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 85.1
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 84.35
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 84.18
2dsj_A423 Pyrimidine-nucleoside (thymidine) phosphorylase; p 84.07
1brw_A433 PYNP, protein (pyrimidine nucleoside phosphorylase 83.69
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 83.68
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 83.33
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 83.12
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 80.91
1uou_A474 Thymidine phosphorylase; transferase, glycosyltran 80.33
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis} Back     alignment and structure
Probab=99.87  E-value=1e-22  Score=180.33  Aligned_cols=101  Identities=23%  Similarity=0.286  Sum_probs=89.2

Q ss_pred             cCCCCCChhhHHHHHHHHHhhhcCCCCCccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHcCCCcEEEEEcCCCC
Q 029418           92 IKLPSHPTYDLKGVVKLALAEDAGDRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEVDPSLKVEWSLKDGD  171 (193)
Q Consensus        92 ~~~p~~p~~~L~~~I~~aL~EDig~~GDlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~ldp~leve~~v~DGd  171 (193)
                      -+||.+.+..+++.|++||+||+|+.||+||.++++++. +++.+++||+||+||++++.++|+.+|++++++|+++||+
T Consensus        16 ~~~~~~~~~~~~~~i~~~L~ED~g~~gD~tt~~l~~~~~-~~a~i~are~gVlaG~~~a~~vf~~l~~~~~v~~~~~dG~   94 (300)
T 3l0g_A           16 TQGPGSMKISFSEIIHNALKEDLGDKGDITTNSILINEK-VNFAINTRENLVVCGIPILEEVFNMNKEHVKYEIHKKDGD   94 (300)
T ss_dssp             --------CCCHHHHHHHHHHHHTTTCCHHHHHHCSSCE-EEEEEEESSCEECCCHHHHHHHHHHTTTTEEEEECCCTTC
T ss_pred             CCCCcchHHHHHHHHHHHHHhhCCCCCCcchhhcccCCc-EEEEEEECCCeEEEcHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence            467777788899999999999999329999998888888 9999999999999999999999999999999999999999


Q ss_pred             eeecCCEEEEEEeChhhhcccC
Q 029418          172 HVHKGLQFGKVSGKPRKINSFW  193 (193)
Q Consensus       172 ~V~kGdvIleV~G~ArsLL~aE  193 (193)
                      .|++|++|++++|++++||++|
T Consensus        95 ~v~~g~~v~~i~G~a~~ll~~E  116 (300)
T 3l0g_A           95 ITGKNSTLVSGEALAIYLLPIE  116 (300)
T ss_dssp             EECSSCEEEEEEEEHHHHGGGH
T ss_pred             EeeCCCEEEEEEECHHHHHHHH
Confidence            9999999999999999999987
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus} Back     alignment and structure
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp} Back     alignment and structure
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor} Back     alignment and structure
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A* Back     alignment and structure
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei} Back     alignment and structure
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A* Back     alignment and structure
>2jbm_A Nicotinate-nucleotide pyrophosphorylase; NAD, enzyme, metabolism, transferase, polymorphism, glycosyltransferase, pyridine nucleotide biosynthesis; HET: SRT; 2.0A {Homo sapiens} PDB: 3lar_A Back     alignment and structure
>3c2e_A Nicotinate-nucleotide pyrophosphorylase; qprtase, prtase, BNA6, mechanism, cytoplasm, glycosyltransferase, nucleus; 1.90A {Saccharomyces cerevisiae} PDB: 3c2f_A* 3c2o_A* 3c2v_A* 3c2r_A* Back     alignment and structure
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A Back     alignment and structure
>2i14_A Nicotinate-nucleotide pyrophosphorylase; ligand binding, phosphoribosylpyrophosphate, Zn metal ION, structural genomics, PSI; HET: PCP; 2.90A {Pyrococcus furiosus} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>2f7f_A Nicotinate phosphoribosyltransferase, putative; structural genomics, PSI; 2.00A {Enterococcus faecalis} SCOP: c.1.17.1 d.41.2.1 Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure
>2dsj_A Pyrimidine-nucleoside (thymidine) phosphorylase; pyrimidine-nucleoside phosphorylase, structural genomics; 1.80A {Thermus thermophilus} Back     alignment and structure
>1brw_A PYNP, protein (pyrimidine nucleoside phosphorylase); domain movement, transferase; HET: MES; 2.10A {Geobacillus stearothermophilus} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>1uou_A Thymidine phosphorylase; transferase, glycosyltransferase, chemotaxis, angiogenesis; HET: CMU; 2.11A {Homo sapiens} SCOP: a.46.2.1 c.27.1.1 d.41.3.1 PDB: 2wk6_A 2wk5_A 2j0f_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 193
d1qapa2122 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosylt 1e-19
d1qpoa2115 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosylt 1e-19
d1o4ua2103 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosylt 1e-10
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 122 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Salmonella typhimurium [TaxId: 90371]

 Score = 78.4 bits (193), Expect = 1e-19
 Identities = 25/94 (26%), Positives = 43/94 (45%), Gaps = 4/94 (4%)

Query: 100 YDLKGVVKLALAEDAG---DRGDVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHE 156
            D+   V  AL ED G   D G+      +P D +  A  + +EDG+  G    E +F +
Sbjct: 13  LDIPAAVAQALREDLGGEVDAGNDITAQLLPADTQAHATVITREDGVFCGKRWVEEVFIQ 72

Query: 157 V-DPSLKVEWSLKDGDHVHKGLQFGKVSGKPRKI 189
           +    +++ W + DGD +H      ++ G  R +
Sbjct: 73  LAGDDVRLTWHVDDGDAIHANQTVFELQGPARVL 106
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 115 Back     information, alignment and structure
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Length = 103 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query193
d1qpoa2115 Quinolinic acid phosphoribosyltransferase (Nicotin 99.93
d1qapa2122 Quinolinic acid phosphoribosyltransferase (Nicotin 99.88
d1o4ua2103 Quinolinic acid phosphoribosyltransferase (Nicotin 99.87
d2i14a2110 Nicotinate-nucleotide pyrophosphorylase PF1904 {Py 97.59
d1ytda2119 Nicotinate phosphoribosyltransferase Ta1145 {Therm 96.67
d1uoua3105 Thymidine phosphorylase {Human (Homo sapiens) [Tax 94.82
d1brwa3103 Pyrimidine nucleoside phosphorylase {Bacillus stea 92.87
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 91.27
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 90.32
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 90.11
d2tpta3105 Thymidine phosphorylase {Escherichia coli [TaxId: 89.82
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 89.74
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 89.59
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 88.84
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 88.82
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 88.62
d2f7fa2137 Putative nicotinate phosphoribosyltransferase EF26 84.82
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 83.91
>d1qpoa2 d.41.2.1 (A:2-116) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: alpha/beta-Hammerhead
superfamily: Nicotinate/Quinolinate PRTase N-terminal domain-like
family: NadC N-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.93  E-value=3.1e-26  Score=174.83  Aligned_cols=93  Identities=26%  Similarity=0.396  Sum_probs=88.0

Q ss_pred             hhHHHHHHHHHhhhcCCCC-CccCccccCCCcEEEEEEEeeCCeEEEcHHHHHHHHHHc--CCCcEEEEEcCCCCeeecC
Q 029418          100 YDLKGVVKLALAEDAGDRG-DVTCMATIPLDMEVEAHFLAKEDGIIAGIALAEMIFHEV--DPSLKVEWSLKDGDHVHKG  176 (193)
Q Consensus       100 ~~L~~~I~~aL~EDig~~G-DlTT~ali~~d~~akA~IiAKEdGVlAGl~va~~IF~~l--dp~leve~~v~DGd~V~kG  176 (193)
                      ..+++.|++||+||+|+ | |+||.++++++..++|+++|||+||+||++++.++|+++  +++++++|+++||++|++|
T Consensus         8 ~~~~~~i~~aL~EDlg~-g~DiTt~~li~~~~~~~A~i~ake~gVlaG~~~~~~if~~l~~~~~i~~~~~~~DG~~v~~G   86 (115)
T d1qpoa2           8 AAARAAIARGLDEDLRY-GPDVTTLATVPASATTTASLVTREAGVVAGLDVALLTLNEVLGTNGYRVLDRVEDGARVPPG   86 (115)
T ss_dssp             HHHHHHHHHHHHHHHTT-CCCHHHHHHSCTTCEEEEEEEESSCEECCCHHHHHHHHHHHHCTTSEEEEEECCTTCEECTT
T ss_pred             HHHHHHHHHHHHccCCC-CCCcCchhhcCCCCeEEEEEEECCCCceehHHHHHHHHHHhccccccceeeecCCCCEEecc
Confidence            35689999999999996 6 999999999999999999999999999999999999988  6679999999999999999


Q ss_pred             CEEEEEEeChhhhcccC
Q 029418          177 LQFGKVSGKPRKINSFW  193 (193)
Q Consensus       177 dvIleV~G~ArsLL~aE  193 (193)
                      ++|++++|++++||++|
T Consensus        87 ~~I~~i~G~a~~iL~~E  103 (115)
T d1qpoa2          87 EALMTLEAQTRGLLTAE  103 (115)
T ss_dssp             CEEEEEEEEHHHHHHHH
T ss_pred             eeEEEEechHHHHHHHH
Confidence            99999999999999987
>d1qapa2 d.41.2.1 (A:8-129) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1o4ua2 d.41.2.1 (A:1-103) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), N-terminal domain {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2i14a2 d.41.2.1 (A:1-110) Nicotinate-nucleotide pyrophosphorylase PF1904 {Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1ytda2 d.41.2.1 (A:1-119) Nicotinate phosphoribosyltransferase Ta1145 {Thermoplasma acidophilum [TaxId: 2303]} Back     information, alignment and structure
>d1uoua3 d.41.3.1 (A:374-480) Thymidine phosphorylase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1brwa3 d.41.3.1 (A:331-433) Pyrimidine nucleoside phosphorylase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d2tpta3 d.41.3.1 (A:336-440) Thymidine phosphorylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d2f7fa2 d.41.2.1 (A:4-140) Putative nicotinate phosphoribosyltransferase EF2626 {Enterococcus faecalis [TaxId: 1351]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure