Citrus Sinensis ID: 030459

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
Protein Sequence
MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Secondary Structure (PSIPRED)
cHHHHHHHcccccccccccEEEEEEEEccEEEEEEccccccccccccHHHHHHHcccccccEEEEEcccccccccEEEEccccccccccHHHHHHHHcccccccEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHccccccccHEEEEEEEEEEccEEEEEEEEcccHHHcHHHHHHHHHHHcccHHHEEEEEEEcccccccEEEEEcccccccHHHHHHHHHcccccccEEEEEEccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHccHcHccEEccccc
Coil and Loop (DISEMBL)
MIDAFAesqgismntvhckatfgqgfvgdapvllakpqtymnlsgestgplaayyklplnrvlvfhddmglpcgvlrlrhngghgghngLKSVMNNFRGNREFARLRigigrppgqmdpkAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Flexible Loop (DISEMBL)
MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIgrppgqmdPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSkgltesarhfntiqkykhirlqnmpa
Low Complexity Region (SEG)
MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVlrlrhngghgghnglKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered region (IsUnstruct)
**********ISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI*******
Disordered Region (DISOPRED)
MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN***************
Disordered Region (DISEMBL)
********QGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Disordered Region (DISPRO)
MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK***********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	177	2.2.26 [Sep-21-2011]
Q6NLS8	219	Peptidyl-tRNA hydrolase,	yes	no	0.966	0.780	0.771	1e-72
Q9M5P4	256	Chloroplastic group IIB i	N/A	no	0.971	0.671	0.546	4e-53
Q5ZCL8	259	Chloroplastic group IIB i	yes	no	0.949	0.648	0.547	2e-51
Q8GW64	288	Peptidyl-tRNA hydrolase,	no	no	0.960	0.590	0.517	3e-50
Q9FKN4	246	Chloroplastic group IIB i	no	no	0.949	0.682	0.559	4e-49
Q5N9Q7	250	Peptidyl-tRNA hydrolase,	no	no	0.960	0.68	0.511	5e-49
Q9LF14	240	Chloroplastic group IIB i	no	no	0.949	0.7	0.535	2e-48
Q47SW2	213	Peptidyl-tRNA hydrolase O	yes	no	0.881	0.732	0.382	1e-31
Q10LI6	186	CRS2-like protein, chloro	no	no	0.502	0.478	0.741	1e-30
A8F920	188	Peptidyl-tRNA hydrolase O	yes	no	0.903	0.851	0.428	1e-29

>sp|Q6NLS8|PTHM_ARATH Peptidyl-tRNA hydrolase, mitochondrial OS=Arabidopsis thaliana GN=At5g19830 PE=2 SV=1

 Score =  272 bits (695), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 132/171 (77%), Positives = 145/171 (84%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID FAES GI MN V+ KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLN
Sbjct: 42  MIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLN 101

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RVLV HDDM LPCGVLRL+  GGHG HNGLKSVMN+FRGNREFARLRIGIG+PPGQMDPK
Sbjct: 102 RVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPK 161

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 171
           AFLLQKF+  ARER+D AL EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct: 162 AFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis. May also be required for the splicing of group IIB introns in mitochondrions.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 1EC: .EC: 2EC: 9

>sp|Q9M5P4|CRS2_MAIZE Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Zea mays GN=CRS2 PE=1 SV=1

 Score =  206 bits (525), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 94/172 (54%), Positives = 128/172 (74%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT+  K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL 
Sbjct: 85  MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 144

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +  G REF RL IGIG PPG+MDP+
Sbjct: 145 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 204

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRL 172
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QKYK  R+
Sbjct: 205 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 256

Required for the splicing of group IIB introns in chloroplasts. Forms complexes with either CAF1 or CAF2 which, in turn, interact with RNA and confer intron specificity of the splicing particles. Has no peptidyl-tRNA hydrolase activity.

Zea mays (taxid: 4577)

>sp|Q5ZCL8|CRS2_ORYSJ Chloroplastic group IIB intron splicing facilitator CRS2, chloroplastic OS=Oryza sativa subsp. japonica GN=Os01g0132800 PE=2 SV=1

 Score =  201 bits (511), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 92/168 (54%), Positives = 124/168 (73%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT+  K+  G G +G+ PVLL KPQ+Y+N SGE+ GPLAAYY++PL 
Sbjct: 88  MVDRIARDEGITMNTIQSKSLLGIGSIGEVPVLLVKPQSYINYSGEAIGPLAAYYQVPLR 147

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +LV +D+M LP GVLRL+  GGHG HNGL++VM     +RE  RL IGIG PPG+MD +
Sbjct: 148 HILVMYDEMSLPNGVLRLQRKGGHGRHNGLQNVMECLDSSRELPRLSIGIGSPPGKMDTR 207

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QKYK
Sbjct: 208 AFLLQKFSSEERLQIDTALEQGVDAVRTLVLKGFSGSIERFNLVQKYK 255

Required for the splicing of group IIB introns in chloroplasts.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8GW64|PTHC_ARATH Peptidyl-tRNA hydrolase, chloroplastic OS=Arabidopsis thaliana GN=At1g18440 PE=2 SV=2

 Score =  197 bits (501), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 88/170 (51%), Positives = 129/170 (75%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+DA A+++GISMNTV+ KA FG+G +G+ P++LAKPQT+MNLSGES G + ++YK+PL 
Sbjct: 118 MVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLK 177

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           +VLV +DD+ LP G LRL   GGHGGHNG++S+++  +G+R+F RLRIGIGRPPG+MD  
Sbjct: 178 QVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTA 237

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 170
            F+L++FN   +E +D   Q G+E +++LL +G  +SA   NT +  + +
Sbjct: 238 NFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNTRKSMEQL 287

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9FKN4|CRS2A_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-A, chloroplastic OS=Arabidopsis thaliana GN=CRS2A PE=2 SV=1

 Score =  193 bits (491), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 94/168 (55%), Positives = 119/168 (70%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID  A +  ISMNT+  KA  G G VG+ P+LL KPQ YMN SGES GPLAAYY++PL 
Sbjct: 75  MIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLR 134

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DDMGL  GVLRL+  GGH  HNGLK+V  +  G R + RL IGIG PPG MD K
Sbjct: 135 HILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMK 194

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
           AFLLQKF+ + R+++D  L++GVE +K L+ +G ++S   FN  QKYK
Sbjct: 195 AFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 242

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5N9Q7|PTHM_ORYSJ Peptidyl-tRNA hydrolase, mitochondrial OS=Oryza sativa subsp. japonica GN=Os01g0693900 PE=2 SV=1

 Score =  193 bits (490), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 87/170 (51%), Positives = 126/170 (74%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID  AE++GIS++++  KA  G+G +GDAP++LAKPQT+MN SGES G L +Y+K+PLN
Sbjct: 79  MIDVIAEAEGISLSSMQFKAMVGKGRIGDAPIMLAKPQTFMNASGESVGQLVSYFKIPLN 138

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           +VLV +DD+ LP   LRL   GGHGGHNG++S++N+ + NR+F RLRIGIGRPPG+MDP 
Sbjct: 139 QVLVMYDDLDLPFAKLRLLPKGGHGGHNGVRSIINHLKQNRDFPRLRIGIGRPPGKMDPA 198

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHI 170
            F+L+ FN   +E +D A   G+E ++++  +G  +SA + NT Q  + +
Sbjct: 199 NFVLRPFNRKEQEELDFAFHRGLEAVRIMALEGFNKSATYVNTAQSSEML 248

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q9LF14|CRS2B_ARATH Chloroplastic group IIB intron splicing facilitator CRS2-B, chloroplastic OS=Arabidopsis thaliana GN=CRS2B PE=2 SV=1

 Score =  191 bits (485), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/168 (53%), Positives = 119/168 (70%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID  A  +G+ MNT+  KA  G G + D P+LLAKPQTYMN SGES G LA++Y++PL 
Sbjct: 69  MIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLR 128

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +D+M LP GVLRL+  GG G HNG+KSVM +  G R F RL IGIG+PPG MD K
Sbjct: 129 HILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMK 188

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
           AFLLQKF+ + +++I+ AL++G E +K L+  G  +    FN +QKYK
Sbjct: 189 AFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYK 236

Required for the splicing of group IIB introns in chloroplasts.

Arabidopsis thaliana (taxid: 3702)

>sp|Q47SW2|PTH_THEFY Peptidyl-tRNA hydrolase OS=Thermobifida fusca (strain YX) GN=pth PE=3 SV=1

 Score =  135 bits (340), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 60/157 (38%), Positives = 101/157 (64%), Gaps = 1/157 (0%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           ++D  A  +G         A   +  VGDAPV+LAKP +YMNLSG     L+A+YK+P++
Sbjct: 58  VVDELAAQRGERWRLHKAHAQVVETRVGDAPVVLAKPASYMNLSGGPVAKLSAFYKVPVD 117

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           R++V HD++ +P   L+L+  GG  GHNGL+S+  +  G+ ++ R+R+GIGRPPG+MD  
Sbjct: 118 RIIVVHDELDIPFARLKLKRGGGSAGHNGLRSITASL-GSPDYVRVRVGIGRPPGRMDAA 176

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTES 157
           +F+LQ F+   R+ +D  +    + ++ +++ GL ++
Sbjct: 177 SFVLQDFSTAERKELDVHVARAADAVETVVTSGLEKA 213

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Thermobifida fusca (strain YX) (taxid: 269800)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q10LI6|CRS2L_ORYSJ CRS2-like protein, chloroplastic OS=Oryza sativa subsp. japonica GN=Os03g0347800 PE=2 SV=1

 Score =  132 bits (332), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/89 (74%), Positives = 71/89 (79%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID FA+SQGIS+     KA FG+G V   PVLLAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 84  MIDMFAQSQGISLTRHPFKALFGEGMVEGVPVLLAKPQTYMNLSGESVGPLAAYYKLPLN 143

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNG 89
           RVLV  DDM LPCGVLRL+  GG+G HNG
Sbjct: 144 RVLVAFDDMDLPCGVLRLQPKGGYGRHNG 172

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A8F920|PTH_BACP2 Peptidyl-tRNA hydrolase OS=Bacillus pumilus (strain SAFR-032) GN=pth PE=3 SV=1

 Score =  129 bits (323), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/161 (42%), Positives = 91/161 (56%), Gaps = 1/161 (0%)

Query: 2   IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
           ID  ++   I +N       FG GFV    VLL KP TYMNLSGE   PL  YY +PL  
Sbjct: 26  IDELSKKWDIPLNQSKFHGQFGTGFVSGQKVLLVKPLTYMNLSGECVRPLMDYYDIPLEH 85

Query: 62  VLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
           + V +DD+ LP G +RLR  G  GGHNG+KS++ +  G+ EF R RIGIGRP   M    
Sbjct: 86  LKVIYDDLDLPTGRIRLRTKGSAGGHNGIKSLIQHL-GSPEFDRFRIGIGRPQNGMKVVD 144

Query: 122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
           ++L +F+   +  I +A+Q  VE  +  L+K   E    FN
Sbjct: 145 YVLGRFSEEEQPDIASAIQASVEACEAALTKPFLEVMNDFN 185

The natural substrate for this enzyme may be peptidyl-tRNAs which drop off the ribosome during protein synthesis.

Bacillus pumilus (strain SAFR-032) (taxid: 315750)

EC: 3

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
449452694	218	PREDICTED: peptidyl-tRNA hydrolase, mito	1.0	0.811	0.853	3e-82
449493540	218	PREDICTED: peptidyl-tRNA hydrolase, mito	1.0	0.811	0.847	5e-82
449493552	218	PREDICTED: peptidyl-tRNA hydrolase, mito	1.0	0.811	0.841	3e-81
449452658	218	PREDICTED: peptidyl-tRNA hydrolase, mito	1.0	0.811	0.841	4e-81
225435751	217	PREDICTED: peptidyl-tRNA hydrolase, mito	0.988	0.806	0.845	8e-81
358248836	218	uncharacterized protein LOC100808506 [Gl	1.0	0.811	0.807	2e-79
356512501	217	PREDICTED: peptidyl-tRNA hydrolase, mito	1.0	0.815	0.785	3e-76
224052908	222	predicted protein [Populus trichocarpa]	0.988	0.788	0.794	4e-75
255582564	217	peptidyl-tRNA hydrolase, putative [Ricin	1.0	0.815	0.768	2e-73
297808049	218	aminoacyl-tRNA hydrolase [Arabidopsis ly	1.0	0.811	0.762	2e-71

>gi|449452694|ref|XP_004144094.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  309 bits (792), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 151/177 (85%), Positives = 156/177 (88%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID FAES GISMN VHCKA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 42  MIDVFAESIGISMNRVHCKAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLN 101

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RVLVFHDDM LPCGVLRL+HNGGHG HNGLKSV+ +FRGNREFARLRIGIGRPPGQMDPK
Sbjct: 102 RVLVFHDDMNLPCGVLRLQHNGGHGYHNGLKSVIYHFRGNREFARLRIGIGRPPGQMDPK 161

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKFN  A+ERIDTALQEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 162 AFLLQKFNNTAQERIDTALQEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493540|ref|XP_004159339.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  308 bits (789), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 150/177 (84%), Positives = 156/177 (88%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID FAES GI MN VHCKA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 42  MIDVFAESVGIPMNRVHCKAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLN 101

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RVLVFHDDM LPCGVLRL+HNGGHG HNGLKSV+++FRGNREFARLRIGIGRPPGQMDPK
Sbjct: 102 RVLVFHDDMTLPCGVLRLQHNGGHGYHNGLKSVISHFRGNREFARLRIGIGRPPGQMDPK 161

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKFN  A+ERIDTALQEGV  LKLLLS  L ESARHFN  QKYKHIRLQ MP 
Sbjct: 162 AFLLQKFNNTAQERIDTALQEGVGALKLLLSHSLFESARHFNHEQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493552|ref|XP_004159345.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  306 bits (783), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 149/177 (84%), Positives = 155/177 (87%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID FAES GISMN VHCKA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 42  MIDVFAESIGISMNRVHCKAVFGEGFVGDVPVFLAKPQTYMNLSGESAGPLAAYYKLPLN 101

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RVLVFHDDM LPCGVLRL+HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD K
Sbjct: 102 RVLVFHDDMNLPCGVLRLQHNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSK 161

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKFN  A+ERIDTALQEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 162 AFLLQKFNNTAQERIDTALQEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452658|ref|XP_004144076.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Cucumis sativus]

 Score =  305 bits (781), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 149/177 (84%), Positives = 155/177 (87%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID FAES GISMN VHCKA FG+GFVGD PV LAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 42  MIDVFAESIGISMNRVHCKAVFGEGFVGDIPVFLAKPQTYMNLSGESAGPLAAYYKLPLN 101

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RVLVFHDDM LPCGVLRL+HNGGH  H GLKSV+ +FRGNREFARLRIGIGRPPGQMD K
Sbjct: 102 RVLVFHDDMNLPCGVLRLQHNGGHDYHKGLKSVIYHFRGNREFARLRIGIGRPPGQMDSK 161

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKFN  A+ERIDTALQEGV  LKLLLS GL+ESARHFN  QKYKHIRLQ MP 
Sbjct: 162 AFLLQKFNNTAQERIDTALQEGVGALKLLLSHGLSESARHFNHKQKYKHIRLQTMPV 218

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435751|ref|XP_002283606.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial [Vitis vinifera] gi|297746470|emb|CBI16526.3| unnamed protein product [Vitis vinifera]

 Score =  304 bits (779), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 148/175 (84%), Positives = 156/175 (89%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MI+AFAESQGI M+TVHCKA FGQGFV   PV LAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 41  MINAFAESQGIPMDTVHCKAIFGQGFVDAVPVFLAKPQTYMNLSGESAGPLAAYYKLPLN 100

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RV+VFHDDM LPCGVLRL H GGHG HNGLKSV+ +FRGNREF RLRIGIG+PPGQMDPK
Sbjct: 101 RVVVFHDDMSLPCGVLRLHHKGGHGNHNGLKSVIYHFRGNREFPRLRIGIGKPPGQMDPK 160

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 175
           AFLLQKF+A ARERID ALQEGV VLKLL SKGLTESAR FNT QKYKHIR+QNM
Sbjct: 161 AFLLQKFSATARERIDAALQEGVGVLKLLSSKGLTESARCFNTEQKYKHIRVQNM 215

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248836|ref|NP_001239948.1| uncharacterized protein LOC100808506 [Glycine max] gi|255645293|gb|ACU23143.1| unknown [Glycine max]

 Score =  300 bits (767), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 143/177 (80%), Positives = 155/177 (87%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MIDAFAESQGI M+TVH KA FG+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN
Sbjct: 41  MIDAFAESQGIPMDTVHSKAIFGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLN 100

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           +VLVFHDDM LPCGVLRL   GGHG H GLKSV+ NFRGNREF RLRIGIG PPGQMDPK
Sbjct: 101 QVLVFHDDMNLPCGVLRLHDKGGHGSHKGLKSVIYNFRGNREFPRLRIGIGSPPGQMDPK 160

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKFN  AR+RID ALQEG++ LKLLLSKGLTESA+ FN  QKYKH+R+QN+P 
Sbjct: 161 AFLLQKFNVTARQRIDEALQEGIDALKLLLSKGLTESAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356512501|ref|XP_003524957.1| PREDICTED: peptidyl-tRNA hydrolase, mitochondrial-like [Glycine max]

 Score =  289 bits (739), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 139/177 (78%), Positives = 152/177 (85%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MIDAFAESQGI M+TVH KA  G+GFVG+ PV LAKPQTYMNLSGESTGPLAAYYKLPLN
Sbjct: 41  MIDAFAESQGIPMDTVHSKAISGKGFVGEVPVFLAKPQTYMNLSGESTGPLAAYYKLPLN 100

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           +VLVFHDDM LPCGVLRL   GGHG H GLKSV+ +F+GNREF RLRIGIG PPGQMDPK
Sbjct: 101 QVLVFHDDMNLPCGVLRLHDKGGHGSHKGLKSVIYHFKGNREFPRLRIGIGSPPGQMDPK 160

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKFN  AR+RID ALQEGV+ LKLLLSKGL  SA+ FN  QKYKH+R+QN+P 
Sbjct: 161 AFLLQKFNVTARQRIDEALQEGVDALKLLLSKGLAVSAKRFNKEQKYKHLRVQNLPV 217

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224052908|ref|XP_002297632.1| predicted protein [Populus trichocarpa] gi|222844890|gb|EEE82437.1| predicted protein [Populus trichocarpa]

 Score =  285 bits (729), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 139/175 (79%), Positives = 150/175 (85%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MIDAFA S GISMN   CKA FG+GFVGDAPVLLAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 46  MIDAFAGSLGISMNIPLCKALFGEGFVGDAPVLLAKPQTYMNLSGESAGPLAAYYKLPLN 105

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RV+VFHDDM LPCGVLRL+  GGHG H GLKSV+N+FRGNREFARLRIGIGRPPGQMDPK
Sbjct: 106 RVIVFHDDMELPCGVLRLQEKGGHGCHRGLKSVINHFRGNREFARLRIGIGRPPGQMDPK 165

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNM 175
           AFLLQKFNA ARERID AL EGV  L+ +L +GLT +AR FN  QKYK+IR + M
Sbjct: 166 AFLLQKFNATARERIDAALPEGVVALRCILFEGLTRTARWFNQEQKYKYIRSETM 220

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582564|ref|XP_002532065.1| peptidyl-tRNA hydrolase, putative [Ricinus communis] gi|223528269|gb|EEF30320.1| peptidyl-tRNA hydrolase, putative [Ricinus communis]

 Score =  280 bits (716), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 136/177 (76%), Positives = 151/177 (85%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MIDAFA+   I M+ +H KA FG+GFVG+A VLLAKPQTYMNLSGES GPLAAYYKLPLN
Sbjct: 41  MIDAFAQLLQIPMDKLHSKAIFGEGFVGEASVLLAKPQTYMNLSGESAGPLAAYYKLPLN 100

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RV+V HDDM LPCGVLRL+  GGHG HNGLKSV+++FRGNREFARLRIGIGRPPGQMDPK
Sbjct: 101 RVIVLHDDMDLPCGVLRLQPKGGHGSHNGLKSVIHHFRGNREFARLRIGIGRPPGQMDPK 160

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKFNA A++RIDTA+ EG   LK +L KGLTE+AR FN  QKYKHIRLQ MP 
Sbjct: 161 AFLLQKFNATAQKRIDTAIPEGAAALKSILFKGLTETARCFNQEQKYKHIRLQTMPT 217

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297808049|ref|XP_002871908.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata] gi|297317745|gb|EFH48167.1| aminoacyl-tRNA hydrolase [Arabidopsis lyrata subsp. lyrata]

 Score =  273 bits (697), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 135/177 (76%), Positives = 146/177 (82%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           MID FAES GI MN V+ KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLN
Sbjct: 41  MIDVFAESVGIQMNLVNFKAIMGQGFVDDLPVILAKPQTYMNLSGESSGPLAAYYKLPLN 100

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
           RVLV HDDM LPCGVLRL+  GGHG HNGLKSVMN+FRGNREFARLRIGIG PPGQMDPK
Sbjct: 101 RVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGNPPGQMDPK 160

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRLQNMPA 177
           AFLLQKF+  ARER+D AL EGV+ LKL+LSK   ES R FN  QKYKH+R   + A
Sbjct: 161 AFLLQKFSVPARERMDKALAEGVDALKLVLSKDFGESWRLFNVEQKYKHLRQHTIIA 217

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	177
TAIR|locus:2183234	219	AT5G19830 [Arabidopsis thalian	0.966	0.780	0.707	1.2e-58
TAIR|locus:2181412	240	AT5G16140 [Arabidopsis thalian	0.949	0.7	0.482	1.4e-39
TAIR|locus:2173298	250	AT5G38290 [Arabidopsis thalian	0.949	0.672	0.5	3.7e-39
TAIR|locus:2014134	288	AT1G18440 [Arabidopsis thalian	0.920	0.565	0.472	4.8e-39
TIGR_CMR|CHY_0196	187	CHY_0196 "peptidyl-tRNA hydrol	0.903	0.855	0.345	6.3e-21
TIGR_CMR|BA_0050	186	BA_0050 "peptidyl-tRNA hydrola	0.909	0.865	0.327	1.9e-19
UNIPROTKB|P65865	191	pth "Peptidyl-tRNA hydrolase"	0.717	0.664	0.364	8.3e-19
TIGR_CMR|DET_0595	189	DET_0595 "peptidyl-tRNA hydrol	0.909	0.851	0.327	1.1e-18
TIGR_CMR|VC_2184	196	VC_2184 "peptidyl-tRNA hydrola	0.723	0.653	0.346	2.3e-16
TIGR_CMR|GSU_0663	193	GSU_0663 "peptidyl-tRNA hydrol	0.892	0.818	0.329	9.8e-16

TAIR|locus:2183234 AT5G19830 [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 121/171 (70%), Positives = 133/171 (77%)

Query:     1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
             MID FAES GI MN V+ KA  GQGFV D PV+LAKPQTYMNLSGES+GPLAAYYKLPLN
Sbjct:    42 MIDVFAESVGIQMNLVNFKAIMGQGFVADLPVILAKPQTYMNLSGESSGPLAAYYKLPLN 101

Query:    61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
             RVLV HDDM LPCGV               KSVMN+FRGNREFARLRIGIG+PPGQMDPK
Sbjct:   102 RVLVVHDDMQLPCGVLRLQEKGGHGCHNGLKSVMNHFRGNREFARLRIGIGKPPGQMDPK 161

Query:   121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIR 171
             AFLLQKF+  ARER+D AL EGV+ LKL+L+K   ES R FN  QKYKH++
Sbjct:   162 AFLLQKFSMPARERMDKALAEGVDALKLVLAKDFGESWRLFNVEQKYKHLK 212

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0006412 "translation" evidence=ISS

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2181412 AT5G16140 [Arabidopsis thaliana (taxid:3702)]

 Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
 Identities = 81/168 (48%), Positives = 108/168 (64%)

Query:     1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
             MID  A  +G+ MNT+  KA  G G + D P+LLAKPQTYMN SGES G LA++Y++PL 
Sbjct:    69 MIDVLARKEGVLMNTIQSKALIGIGAIEDVPILLAKPQTYMNFSGESVGSLASHYRVPLR 128

Query:    61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
              +L+ +D+M LP GV               KSVM +  G R F RL IGIG+PPG MD K
Sbjct:   129 HILMIYDEMALPNGVLRLQPKGGQGYHNGVKSVMGHLDGRRNFPRLSIGIGKPPGNMDMK 188

Query:   121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
             AFLLQKF+ + +++I+ AL++G E +K L+  G  +    FN +QKYK
Sbjct:   189 AFLLQKFSPLEQKQIEEALEQGSEAVKTLVLNGFNQGISRFNLVQKYK 236

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

TAIR|locus:2173298 AT5G38290 [Arabidopsis thaliana (taxid:3702)]

 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 84/168 (50%), Positives = 108/168 (64%)

Query:     1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
             MID  A +  ISMNT+  KA  G G VG+ P+LL KPQ YMN SGES GPLAAYY++PL 
Sbjct:    79 MIDHIARATDISMNTIQSKALVGIGSVGEVPILLVKPQGYMNFSGESVGPLAAYYQIPLR 138

Query:    61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
              +L+ +DDMGL  GV               K+V  +  G R + RL IGIG PPG MD K
Sbjct:   139 HILMIYDDMGLSNGVLRLQPKGGHSQHNGLKNVTEHLNGCRGYPRLSIGIGNPPGNMDMK 198

Query:   121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
             AFLLQKF+ + R+++D  L++GVE +K L+ +G ++S   FN  QKYK
Sbjct:   199 AFLLQKFSPLERKQMDEGLEQGVEGVKTLVEEGFSDSISRFNLGQKYK 246

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0006783 "heme biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0016556 "mRNA modification" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

TAIR|locus:2014134 AT1G18440 [Arabidopsis thaliana (taxid:3702)]

 Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
 Identities = 77/163 (47%), Positives = 114/163 (69%)

Query:     1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
             M+DA A+++GISMNTV+ KA FG+G +G+ P++LAKPQT+MNLSGES G + ++YK+PL 
Sbjct:   118 MVDALADAEGISMNTVNFKALFGKGVIGNIPIMLAKPQTFMNLSGESVGQIVSFYKIPLK 177

Query:    61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
             +VLV +DD+ LP G                +S+++  +G+R+F RLRIGIGRPPG+MD  
Sbjct:   178 QVLVVYDDLDLPFGKLRLLPKGGHGGHNGMRSIIDRLKGSRDFPRLRIGIGRPPGKMDTA 237

Query:   121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
              F+L++FN   +E +D   Q G+E +++LL +G  +SA   NT
Sbjct:   238 NFVLRQFNRQEQEELDHTFQTGLEAIRILLLEGFNKSATFVNT 280

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IEA;ISS

GO:0006412 "translation" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0006783 "heme biosynthetic process" evidence=RCA

TIGR_CMR|CHY_0196 CHY_0196 "peptidyl-tRNA hydrolase" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 246 (91.7 bits), Expect = 6.3e-21, P = 6.3e-21
 Identities = 56/162 (34%), Positives = 87/162 (53%)

Query:     1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
             ++D  A+  GI +     K+  G+G +    VLL KPQTYMNLSG +     ++YKLPL+
Sbjct:    25 VVDELAKKHGILITKRKFKSLVGEGEILGVKVLLLKPQTYMNLSGTAVQEAVSFYKLPLS 84

Query:    61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
             R++V +DD+ LP G                 S+++   G+ E  RL+IGIGRP    D K
Sbjct:    85 RLVVVYDDLDLPLGKIRLRLKGSAGGHRGMGSIISCL-GSEEIPRLKIGIGRP-AVGDVK 142

Query:   121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
              ++LQ F    RE ++  L+   E + + L++G  ++   FN
Sbjct:   143 DYVLQPFTGAEREILEPTLKLAAEAITVALTEGFNKAMTDFN 184

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0050 BA_0050 "peptidyl-tRNA hydrolase" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 232 (86.7 bits), Expect = 1.9e-19, P = 1.9e-19
 Identities = 53/162 (32%), Positives = 83/162 (51%)

Query:     2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
             ID  A+   IS+N    K  FG GFV    V+L KP TYMNLSGES  PL  YYK+ +  
Sbjct:    26 IDELAKRWNISLNEQKFKGLFGAGFVNGEKVILLKPLTYMNLSGESIRPLMDYYKIDVED 85

Query:    62 VLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
              +V +DD+ +P G                KS +++  G +EF R+R+GI RP   M    
Sbjct:    86 FVVLYDDLDIPVGKLRLRMKGSAGGHNGVKSTISHL-GTQEFQRIRMGIDRPKNGMKVVD 144

Query:   122 FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
             ++L +F +     ++ ++++  +  +  L+K   +    FN+
Sbjct:   145 YVLGRFTSEEIPDVNHSIEKAADACEEWLNKPFLQIMNTFNS 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P65865 pth "Peptidyl-tRNA hydrolase" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 226 (84.6 bits), Expect = 8.3e-19, P = 8.3e-19
 Identities = 47/129 (36%), Positives = 73/129 (56%)

Query:    32 VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
             ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct:    60 LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119

Query:    92 SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
             SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ 
Sbjct:   120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178

Query:   152 KGLTESARH 160
             +G+ E A++
Sbjct:   179 QGM-EPAQN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|DET_0595 DET_0595 "peptidyl-tRNA hydrolase" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 54/165 (32%), Positives = 81/165 (49%)

Query:     2 IDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNR 61
             +  FA+   IS +   C +  G G + D  ++LAKPQTYMNLSG++   L   Y L    
Sbjct:    26 LSRFAKDNHISFDKKCCLSRTGSGRINDEEIVLAKPQTYMNLSGKAASQLLRRYNLKAAD 85

Query:    62 VLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKA 121
             ++V  DD+ LP G                 S++ +  G +EF RL+IGIG+P  + +   
Sbjct:    86 IIVVQDDLDLPAGKIRLRLGGSAGGHNGISSIITDI-GTKEFIRLKIGIGKPDSRNNGTE 144

Query:   122 FL---LQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
              +   L  F    RE +D A+    E L  LL+ GL  ++  FN+
Sbjct:   145 VVDHVLGNFGGEEREIMDKAITRASEALTCLLTFGLDTASNRFNS 189

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|VC_2184 VC_2184 "peptidyl-tRNA hydrolase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 203 (76.5 bits), Expect = 2.3e-16, P = 2.3e-16
 Identities = 45/130 (34%), Positives = 71/130 (54%)

Query:    37 PQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNN 96
             P T+MNLSG++   LA +Y++    ++V HD++ LP GV               K  ++ 
Sbjct:    66 PTTFMNLSGKAIAALANFYQIKPEEIMVAHDELDLPPGVAKFKQGGGHGGHNGLKDTISK 125

Query:    97 FRGNREFARLRIGIGRPPGQMDPKA-FLLQKFNAIARERIDTALQEGVEVLKLLLSKGLT 155
                N+EF RLR+GIG P G  D  A ++L K  A  +E +D A+ E V  L++L+  GLT
Sbjct:   126 LGNNKEFYRLRLGIGHP-GHKDKVAGYVLGKAPAKEQECLDAAVDESVRCLEILMKDGLT 184

Query:   156 ESARHFNTIQ 165
             ++    +T +
Sbjct:   185 KAQNRLHTFK 194

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0008152 "metabolic process" evidence=ISS

TIGR_CMR|GSU_0663 GSU_0663 "peptidyl-tRNA hydrolase" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 197 (74.4 bits), Expect = 9.8e-16, P = 9.8e-16
 Identities = 54/164 (32%), Positives = 82/164 (50%)

Query:     1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
             ++D  A + G S+        FG+G      +LL KPQTYMNLSG S      ++KLPL 
Sbjct:    27 VLDRLAHAIGASVTRKSFSGVFGEGAWHGERLLLLKPQTYMNLSGRSVAEALRFHKLPLC 86

Query:    61 RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
               +V HDD+ +P G                +S++    G   F R+R+GIGRP    D  
Sbjct:    87 DTIVIHDDLDIPFGRVKVKEGGGHGGHNGLRSLVQEL-GGAGFVRVRVGIGRPV-HGDVV 144

Query:   121 AFLLQKFNAIARERIDTA-LQEG-VEVLKLLLSKGLTESARHFN 162
              ++L  F+    E  D A L +G +++L+ LL+ GL ++   +N
Sbjct:   145 NYVLTNFSQ--DEMADLAHLLDGTLDLLESLLTAGLPKTMSLYN 186

GO:0004045 "aminoacyl-tRNA hydrolase activity" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q63HI2	PTH_BACCZ	3, ., 1, ., 1, ., 2, 9	0.3888	0.9096	0.8655	yes	no
Q6NLS8	PTHM_ARATH	3, ., 1, ., 1, ., 2, 9	0.7719	0.9661	0.7808	yes	no
Q2J5Z1	PTH_FRASC	3, ., 1, ., 1, ., 2, 9	0.3473	0.9039	0.8121	yes	no
B8G3X3	PTH_CHLAD	3, ., 1, ., 1, ., 2, 9	0.3719	0.9152	0.8617	yes	no
Q8XHJ8	PTH_CLOPE	3, ., 1, ., 1, ., 2, 9	0.3658	0.9096	0.8563	yes	no
A7GJD4	PTH_CLOBL	3, ., 1, ., 1, ., 2, 9	0.3454	0.9152	0.8571	yes	no
C0ZHD7	PTH_BREBN	3, ., 1, ., 1, ., 2, 9	0.3636	0.9265	0.8677	yes	no
A4T6N5	PTH_MYCGI	3, ., 1, ., 1, ., 2, 9	0.3809	0.9096	0.8385	yes	no
Q6MJR3	PTH_BDEBA	3, ., 1, ., 1, ., 2, 9	0.3619	0.9096	0.8609	yes	no
B9LE93	PTH_CHLSY	3, ., 1, ., 1, ., 2, 9	0.3597	0.9152	0.8617	yes	no
A1TEG1	PTH_MYCVP	3, ., 1, ., 1, ., 2, 9	0.3905	0.9152	0.8437	yes	no
P37470	PTH_BACSU	3, ., 1, ., 1, ., 2, 9	0.4074	0.9096	0.8563	yes	no
Q0RCD6	PTH_FRAAA	3, ., 1, ., 1, ., 2, 9	0.3292	0.9209	0.8274	yes	no
B1KTE2	PTH_CLOBM	3, ., 1, ., 1, ., 2, 9	0.3454	0.9152	0.8571	yes	no
Q0TMG7	PTH_CLOP1	3, ., 1, ., 1, ., 2, 9	0.3658	0.9096	0.8563	yes	no
Q3Z8W2	PTH_DEHE1	3, ., 1, ., 1, ., 2, 9	0.3888	0.8926	0.8359	yes	no
B9IZD4	PTH_BACCQ	3, ., 1, ., 1, ., 2, 9	0.3888	0.9096	0.8655	yes	no
Q9F8Q3	PTH_CARHZ	3, ., 1, ., 1, ., 2, 9	0.3950	0.9039	0.8556	yes	no
Q65PG8	PTH_BACLD	3, ., 1, ., 1, ., 2, 9	0.3913	0.9039	0.8510	yes	no
A7FPJ7	PTH_CLOB1	3, ., 1, ., 1, ., 2, 9	0.3454	0.9152	0.8571	yes	no
C3KW96	PTH_CLOB6	3, ., 1, ., 1, ., 2, 9	0.3454	0.9152	0.8571	yes	no
A8F920	PTH_BACP2	3, ., 1, ., 1, ., 2, 9	0.4285	0.9039	0.8510	yes	no
B1IGZ7	PTH_CLOBK	3, ., 1, ., 1, ., 2, 9	0.3515	0.9152	0.8571	yes	no
A9WBS1	PTH_CHLAA	3, ., 1, ., 1, ., 2, 9	0.3597	0.9152	0.8617	yes	no
A9KR32	PTH_CLOPH	3, ., 1, ., 1, ., 2, 9	0.3788	0.9039	0.8376	yes	no
Q181A2	PTH_CLOD6	3, ., 1, ., 1, ., 2, 9	0.3580	0.9096	0.8655	yes	no
C1FNE6	PTH_CLOBJ	3, ., 1, ., 1, ., 2, 9	0.3454	0.9152	0.8571	yes	no
A7Z0H6	PTH_BACA2	3, ., 1, ., 1, ., 2, 9	0.3913	0.9039	0.8510	yes	no
A5I7R5	PTH_CLOBH	3, ., 1, ., 1, ., 2, 9	0.3454	0.9152	0.8571	yes	no
A7GJW3	PTH_BACCN	3, ., 1, ., 1, ., 2, 9	0.4074	0.9096	0.8655	yes	no
Q5ZCL8	CRS2_ORYSJ	No assigned EC number	0.5476	0.9491	0.6486	yes	no
Q6HPW6	PTH_BACHK	3, ., 1, ., 1, ., 2, 9	0.3888	0.9096	0.8655	yes	no
A0PXL3	PTH_CLONN	3, ., 1, ., 1, ., 2, 9	0.3641	0.9039	0.8510	yes	no
Q5L3U7	PTH_GEOKA	3, ., 1, ., 1, ., 2, 9	0.3641	0.9096	0.8655	yes	no
Q81VY9	PTH_BACAN	3, ., 1, ., 1, ., 2, 9	0.3888	0.9096	0.8655	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.1.29	0.991
3rd Layer	3.1.1	0.976

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024798001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (217 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00018977001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (322 aa)	•						•		0.795
	GSVIVG00015830001	RecName- Full=Ribose-phosphate pyrophosphokinase; EC=2.7.6.1; (321 aa)	•						•		0.791
	GSVIVG00025769001	SubName- Full=Chromosome chr19 scaffold_35, whole genome shotgun sequence; (365 aa)	•			•			•		0.719
	GSVIVG00020546001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (258 aa)							•		0.670
	GSVIVG00009701001	SubName- Full=Chromosome undetermined scaffold_245, whole genome shotgun sequence; (251 aa)	•								0.629
	GSVIVG00017183001	RecName- Full=Translation initiation factor IF-3;; IF-3 binds to the 30S ribosomal subunit and [...] (272 aa)							•		0.609
	GSVIVG00017298001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (339 aa)	•			•					0.602
	GSVIVG00007283001	SubName- Full=Chromosome chr2 scaffold_187, whole genome shotgun sequence; (682 aa)	•						•		0.594
	GSVIVG00002517001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (258 aa)	•								0.575
	GSVIVG00022142001	SubName- Full=Chromosome chr6 scaffold_25, whole genome shotgun sequence; (195 aa)	•			•					0.544

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	177
cd02406	191	cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) i	2e-93
cd00462	171	cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a m	2e-62
pfam01195	183	pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolas	8e-59
PRK05426	189	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provi	3e-56
COG0193	190	COG0193, Pth, Peptidyl-tRNA hydrolase [Translation	2e-54
TIGR00447	188	TIGR00447, pth, peptidyl-tRNA hydrolase	8e-44

>gnl|CDD|239090 cd02406, CRS2, Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

 Score =  268 bits (688), Expect = 2e-93
 Identities = 103/166 (62%), Positives = 130/166 (78%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  AE++GI+MNT+  K+  G G +GD PVLLAKPQTYMN SGES GPLAAYYK+PL 
Sbjct: 26  MVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYKVPLR 85

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +LV +DDM LP GVLRL+  GGHG HNGL+SV+ +  G+REF RL IGIG PPG+MDP+
Sbjct: 86  HILVIYDDMSLPNGVLRLQPKGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPR 145

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 166
           AFLLQKF++  RE+IDTAL++GV+ ++ L+ KG   SA  FN +QK
Sbjct: 146 AFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGFNGSAERFNLVQK 191

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH). Length = 191

>gnl|CDD|238259 cd00462, PTH, Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

 Score =  189 bits (484), Expect = 2e-62
 Identities = 71/150 (47%), Positives = 99/150 (66%), Gaps = 1/150 (0%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           ++DA AE  G+S      K   G+G +G   VLL KPQTYMNLSGE+   LA +YK+P  
Sbjct: 23  VLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIPPE 82

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +LV HDD+ LP G +RL+  GG GGHNGLKS++ +  G  +F RLRIGIGRPP +MD  
Sbjct: 83  DILVIHDDLDLPLGKIRLKKGGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVA 141

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLL 150
            ++L KF+   RE ++ A+++  + L+ +L
Sbjct: 142 DYVLSKFSKEERELLEEAIEKAADALEDIL 171

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts. Length = 171

>gnl|CDD|216355 pfam01195, Pept_tRNA_hydro, Peptidyl-tRNA hydrolase

 Score =  181 bits (461), Expect = 8e-59
 Identities = 68/157 (43%), Positives = 97/157 (61%), Gaps = 2/157 (1%)

Query: 1   MIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
           +ID  AE  G+S+      K    +G +    V+L KPQTYMNLSGE+   +A +YK+P 
Sbjct: 23  VIDRLAERLGVSLKKKKKFKGLIAKGRIEGEKVILLKPQTYMNLSGEAVRAIARFYKIPP 82

Query: 60  NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
             +LV HDD+ LP G LRL+  GG GGHNGLKS++ +  G  +F RLRIGIGRPP + D 
Sbjct: 83  EDILVVHDDLDLPLGKLRLKKGGGAGGHNGLKSIIQHL-GTNDFKRLRIGIGRPPDKNDV 141

Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 156
             ++L KF+    E +D A+++  + L+ L+  G  +
Sbjct: 142 ADYVLSKFSPEELELLDKAIEKAADALEDLIEGGFDK 178

Length = 183

>gnl|CDD|235457 PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional

 Score =  174 bits (445), Expect = 3e-56
 Identities = 66/163 (40%), Positives = 98/163 (60%), Gaps = 3/163 (1%)

Query: 2   IDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           +D  A   G S+      K    +G +    V+L KPQTYMNLSG++   LA +YK+P  
Sbjct: 27  VDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANFYKIPPE 86

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +LV HDD+ LP G +RL+  GG GGHNGLKS++ +  G ++F RLRIGIGRP  +    
Sbjct: 87  DILVIHDDLDLPPGKIRLKKGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPDKK-KVV 144

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
            ++L KF+   +E +D A+ +  + ++LLL  G  ++   FN+
Sbjct: 145 DYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFEKAMNKFNS 187

Length = 189

>gnl|CDD|223271 COG0193, Pth, Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

 Score =  170 bits (434), Expect = 2e-54
 Identities = 63/164 (38%), Positives = 92/164 (56%), Gaps = 2/164 (1%)

Query: 1   MIDAFAESQGIS-MNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
           ++D  A    +S            +G +    V+L KP TYMNLSG++ G LA++YK+  
Sbjct: 26  VVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASFYKIKP 85

Query: 60  NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
             +LV HD++ LP G +RL+  GG GGHNGLKS++ +  G   F RLRIGIGRP    D 
Sbjct: 86  EDILVVHDELDLPLGKVRLKLGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDV 144

Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
             ++L KF+   RE +D A+ +  + L+LLL     ++    N 
Sbjct: 145 ADYVLGKFSKEERELLDKAIDKAADALELLLEGDFEKAMNKLNA 188

Length = 190

>gnl|CDD|213531 TIGR00447, pth, peptidyl-tRNA hydrolase

 Score =  143 bits (362), Expect = 8e-44
 Identities = 62/154 (40%), Positives = 90/154 (58%), Gaps = 2/154 (1%)

Query: 1   MIDAFAESQGISMNTVHCK-ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
           ++D  A   G+S+ T         +G +    V+L KP TYMNLSGE+   LA++Y++  
Sbjct: 25  VLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFYRIKP 84

Query: 60  NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
             +LV HD++ LP G +RL+  GG GGHNGLKS++++  G   F RLRIGIG P G    
Sbjct: 85  AELLVVHDELDLPLGKVRLKMGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKV 143

Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG 153
             F+L KF       ++ AL + VE L++  S+G
Sbjct: 144 VEFVLSKFTKSELPLLEKALDKAVEALEMSFSEG 177

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function [Protein synthesis, Other]. Length = 188

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	177
COG0193	190	Pth Peptidyl-tRNA hydrolase [Translation, ribosoma	100.0
cd02406	191	CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclea	100.0
TIGR00447	188	pth peptidyl-tRNA hydrolase. The natural substrate	100.0
PRK05426	189	peptidyl-tRNA hydrolase; Provisional	100.0
PF01195	184	Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro	100.0
cd00462	171	PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric p	100.0
KOG2255	224	consensus Peptidyl-tRNA hydrolase [Translation, ri	100.0

>COG0193 Pth Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2e-62  Score=399.58  Aligned_cols=163  Identities=39%  Similarity=0.723  Sum_probs=157.9

Q ss_pred             CHHHHHHHcCCCC-cccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~-~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      ++|.||+++++++ ..+||.++++++.+.+++|+|+||+||||+||++|.++++||+|+|++++|||||||||+|++|+|
T Consensus        26 ~vD~La~~~~~~~~~~~kf~~~~~~~~i~g~kv~l~kP~TyMNlSG~~V~~~~~fy~i~~~~ilVvhDdLdl~~G~vrlk  105 (190)
T COG0193          26 VVDLLARRLNLSFKEEKKFNGLVAKGTIEGEKVILLKPTTYMNLSGKAVGALASFYKIKPEDILVVHDELDLPLGKVRLK  105 (190)
T ss_pred             HHHHHHHHhCCCCccccccCceeEEEEeCCcEEEEecCccceeCcHHHHHHHHHHhCCCHHHEEEEeeccCCCCceEEEE
Confidence            5899999999999 457899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR  159 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn  159 (177)
                      .+||+|||||||||+++| ||++|+|||||||||+.+++|++|||++|+++|++.++++++.+++|++.++..++++|||
T Consensus       106 ~~Gg~gGHNGlKSi~~~l-Gt~~f~RlRiGIGrP~~~~~v~~~VL~~f~~~E~~~l~~~~~~a~~~~~~~~~~~~~~~mn  184 (190)
T COG0193         106 LGGGAGGHNGLKSIIAHL-GTNNFYRLRIGIGRPGNGEDVADYVLGKFSKEERELLDKAIDKAADALELLLEGDFEKAMN  184 (190)
T ss_pred             cCCCCCCcccHHHHHHHh-CCCccceEEEEcCCCCCCCchhHhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence            999999999999999999 7999999999999998888999999999999999999999999999999999999999999


Q ss_pred             hhhhh
Q 030459          160 HFNTI  164 (177)
Q Consensus       160 ~~n~~  164 (177)
                      +||+.
T Consensus       185 ~~~~~  189 (190)
T COG0193         185 KLNAL  189 (190)
T ss_pred             HHhcc
Confidence            99974

>cd02406 CRS2 Chloroplast RNA splicing 2 (CRS2) is a nuclear-encoded protein required for the splicing of group II introns in the chloroplast

Probab=100.00  E-value=1.7e-61  Score=396.22  Aligned_cols=164  Identities=62%  Similarity=1.056  Sum_probs=156.9

Q ss_pred             CHHHHHHHcCCCCcccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEec
Q 030459            1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH   80 (177)
Q Consensus         1 viD~la~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~   80 (177)
                      ++|+||+++++++++.+++++++++.+.+++++|+||+||||+||++|+++++||+|++++++|||||||||+|++|+|.
T Consensus        26 vld~La~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~aV~~~~~~yki~~~~ilVihDdldl~~G~irlk~  105 (191)
T cd02406          26 MVDRIAEAEGITMNTIQFKSLLGIGSIGDVPVLLAKPQTYMNYSGESVGPLAAYYKVPLRHILVIYDDMSLPNGVLRLQP  105 (191)
T ss_pred             HHHHHHHHcCCCccccccceEEEEEEECCeEEEEEeCCCchhcCHHHHHHHHHHhCCCHHHEEEEEECCCCCCCeEEEcC
Confidence            58999999999887678889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHh
Q 030459           81 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH  160 (177)
Q Consensus        81 gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn~  160 (177)
                      +||+|||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.++++++.|+++++.|+.+++++|||+
T Consensus       106 gGs~gGHNGlkSI~~~Lggt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~~~~~~~~~~~~~~n~  185 (191)
T cd02406         106 KGGHGRHNGLQSVIEHLDGSREFPRLSIGIGSPPGKMDPRAFLLQKFSSEEREQIDTALEQGVDAVRTLVLKGFNGSAER  185 (191)
T ss_pred             CCCCCCcCCHHHHHHHhCCCCCeEEEEEEeCCCCCCCchhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            99999999999999999557899999999999977678999999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 030459          161 FNTI  164 (177)
Q Consensus       161 ~n~~  164 (177)
                      ||+.
T Consensus       186 ~n~~  189 (191)
T cd02406         186 FNLV  189 (191)
T ss_pred             HhCC
Confidence            9964

CRS2 forms stable complexes with two CRS2-associated factors, CAF1 and CAF2, which are required for the splicing of distinct subsets of CRS2-dependent introns. CRS2 is closely related to bacterial peptidyl-tRNA hydrolases (PTH).

>TIGR00447 pth peptidyl-tRNA hydrolase

Probab=100.00  E-value=8e-60  Score=385.55  Aligned_cols=162  Identities=40%  Similarity=0.718  Sum_probs=155.0

Q ss_pred             CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||+++++++.+ .++.++++++.+.+++++|+||+||||+||++|++++++|+|++++++|||||||+|+|++|+|
T Consensus        25 ~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDdldl~~G~irlk  104 (188)
T TIGR00447        25 VLDLLASRLGLSLRTEKKFFGYTERGLLSGKKVILLKPLTYMNLSGEAVRALASFYRIKPAELLVVHDELDLPLGKVRLK  104 (188)
T ss_pred             HHHHHHHHcCcCCcccccceEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHhCCChHHEEEEEecCCCCCceEEEe
Confidence            589999999998863 5688899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcC-HHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKG-LTESA  158 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~-~~~am  158 (177)
                      .+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.++++++.++++++.|+.++ +++||
T Consensus       105 ~~G~~gGHNGlkSI~~~l-gt~~f~RlrIGIGrP~~~~~v~~yVL~~f~~~e~~~l~~~i~~~~~~~~~~~~~~~~~~~~  183 (188)
T TIGR00447       105 MGGGAGGHNGLKSIISHL-GTNNFNRLRIGIGSPGGSNKVVEFVLSKFTKSELPLLEKALDKAVEALEMSFSEGAFLKAM  183 (188)
T ss_pred             cCCCCCCcCCHHHHHHHh-CCCCcceEEEEeCCCCCCCchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence            999999999999999999 7999999999999998777899999999999999999999999999999999998 99999


Q ss_pred             Hhhhh
Q 030459          159 RHFNT  163 (177)
Q Consensus       159 n~~n~  163 (177)
                      |+||+
T Consensus       184 n~~n~  188 (188)
T TIGR00447       184 NRFNS  188 (188)
T ss_pred             HHhhC
Confidence            99995

The natural substrate for this enzyme may be peptidyl-tRNAs that drop off the ribosome during protein synthesis. Peptidyl-tRNA hydrolase is a bacterial protein; YHR189W from Saccharomyces cerevisiae appears to be orthologous and likely has the same function.

>PRK05426 peptidyl-tRNA hydrolase; Provisional

Probab=100.00  E-value=2.1e-58  Score=377.43  Aligned_cols=162  Identities=41%  Similarity=0.760  Sum_probs=154.1

Q ss_pred             CHHHHHHHcCCCCc-ccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      ++|.||++++..+. ..++.++++++.+.+++++|+||+||||+||++|.+++++|+|++++++|||||+|+|+|++|+|
T Consensus        26 ~ld~la~~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDdldl~~G~~r~k  105 (189)
T PRK05426         26 VVDELARRLGGSLKEKKKFKGLIAEGRINGEKVILLKPQTYMNLSGKAVAALANFYKIPPEDILVIHDDLDLPPGKIRLK  105 (189)
T ss_pred             HHHHHHHHcCCCCcccccccEEEEEEEECCeEEEEEeCCcchhcCcHHHHHHHHHhCCCHHHEEEEEecCCCCCceEEEe
Confidence            58999999888765 35788999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR  159 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn  159 (177)
                      .+||++||||||||+++| +|++|+|||||||||+ ..++++|||++|+++|++.++++++.|+++++.|++++++++||
T Consensus       106 ~gGs~~GHNGlkSI~~~l-gt~~f~RlriGIGrP~-~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~v~~~~~~~~~~~~~  183 (189)
T PRK05426        106 KGGGAGGHNGLKSIIAHL-GTQDFWRLRIGIGRPD-KKKVVDYVLGKFSKEEQELLDKAIDKAADAIELLLEGGFEKAMN  183 (189)
T ss_pred             cCCCCCCcCCHHHHHHHh-CCCCeeEEEEEeCCCC-CCCcchhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            999999999999999999 7999999999999997 56799999999999999999999999999999999999999999


Q ss_pred             hhhhh
Q 030459          160 HFNTI  164 (177)
Q Consensus       160 ~~n~~  164 (177)
                      +||+.
T Consensus       184 ~~n~~  188 (189)
T PRK05426        184 KFNSK  188 (189)
T ss_pred             HHhCC
Confidence            99964

>PF01195 Pept_tRNA_hydro: Peptidyl-tRNA hydrolase; InterPro: IPR001328 Peptidyl-tRNA hydrolase (3

Probab=100.00  E-value=1.6e-58  Score=376.31  Aligned_cols=161  Identities=40%  Similarity=0.779  Sum_probs=144.6

Q ss_pred             CHHHHHHHcCCCCccc-ccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      ++|+||++++.+|... ++.+.++++.+.+++++|+||+||||+||.+|++++++|++++++++|||||+|+|+|++|+|
T Consensus        23 ~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~L~KP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDdldl~~G~irlk  102 (184)
T PF01195_consen   23 VLDRLASRLGLSWKQKKKFKSLISEGSIKGEKVILLKPQTYMNLSGKAVKKILSFYKIPPENILVIHDDLDLPLGKIRLK  102 (184)
T ss_dssp             HHHHHHHHTT---EEEGGGTEEEEEEEETTEEEEEEEESSTGGGHHHHHHHHHHHTT--GGGEEEEEEETTSSTTEEEEE
T ss_pred             HHHHHHHHhCCCccccccceeEEEEEEEeeeeEEEEcCCCeEeCccHhHHHHHHHhCCCcceEEEEEeccCCCCCeEEEc
Confidence            4899999999998664 488999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR  159 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn  159 (177)
                      .+||++||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.++++++.|+++++.|+++++++|||
T Consensus       103 ~~Gs~~GHNGlkSI~~~L-gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~~~~a~~~l~~~i~~~~~~~mn  181 (184)
T PF01195_consen  103 KGGSSGGHNGLKSIIQHL-GTEDFPRLRIGIGRPPSKEDVADYVLSKFSPEERELLDKVIPQAAEALEQIIEGGFEKAMN  181 (184)
T ss_dssp             ESS--TT-HHHHHHHHHC-TSSGSEEEEEEE--TSTTSGHHHHHTSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHh-ccccceeEEEecCCCCCcchHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            999999999999999999 7999999999999998777999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 030459          160 HFN  162 (177)
Q Consensus       160 ~~n  162 (177)
                      +||
T Consensus       182 ~~n  184 (184)
T PF01195_consen  182 KFN  184 (184)
T ss_dssp             HHH
T ss_pred             HhC
Confidence            998

1.1.29 from EC) (PTH) is a bacterial enzyme that cleaves peptidyl-tRNA or N-acyl-aminoacyl-tRNA to yield free peptides or N-acyl-amino acids and tRNA. The natural substrate for this enzyme may be peptidyl-tRNA which drop off the ribosome during protein synthesis [, ]. Bacterial PTH has been found to be evolutionary related to a yeast protein [].; GO: 0004045 aminoacyl-tRNA hydrolase activity; PDB: 3KJZ_A 3KK0_A 3P2J_A 3V2I_A 3TCN_A 3TD6_A 2Z2K_A 3TD2_A 2Z2J_B 2JRC_A ....

>cd00462 PTH Peptidyl-tRNA hydrolase (PTH) is a monomeric protein that cleaves the ester bond linking the nascent peptide and tRNA when peptidyl-tRNA is released prematurely from the ribosome

Probab=100.00  E-value=2.8e-57  Score=365.77  Aligned_cols=149  Identities=48%  Similarity=0.881  Sum_probs=142.9

Q ss_pred             CHHHHHHHcCCCCcccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEec
Q 030459            1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH   80 (177)
Q Consensus         1 viD~la~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~   80 (177)
                      +||+||+++++++.+.++.++++++.+.+++++|+||+||||+||.+|.+++++|+|++++++|||||||+|+|++|+|.
T Consensus        23 ~ld~La~~~~~~~~~~~~~~~~~~~~~~~~~v~L~kP~TyMN~SG~~V~~~~~~~~i~~~~ilVihDdldl~~G~vrlk~  102 (171)
T cd00462          23 VLDALAERYGVSFKKKKKKGLVGEGRIGGEKVLLLKPQTYMNLSGEAVAALANFYKIPPEDILVIHDDLDLPLGKIRLKK  102 (171)
T ss_pred             HHHHHHHHcCCCCCccccCEEEEEEEECCEEEEEEeCCcccccccHHHHHHHHhcCCChhHEEEEEecCCCCCceEEEeC
Confidence            58999999999987777789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHH
Q 030459           81 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLL  150 (177)
Q Consensus        81 gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~  150 (177)
                      +||+|||||||||+++| +|++|+|||||||||+.+.++++|||++|+++|++.++++++.++++++.|+
T Consensus       103 ~G~~gGHNGlkSI~~~l-gt~~f~RlriGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~~~~~~~~~~~~~  171 (171)
T cd00462         103 GGGSGGHNGLKSIIAHL-GTEDFPRLRIGIGRPPNKMDVADYVLSKFSKEERELLEEAIEKAADALEDIL  171 (171)
T ss_pred             CCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCChhhhhcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence            99999999999999999 7999999999999998878999999999999999999999999999998763

This ensures the recycling of peptidyl-tRNAs into tRNAs produced through abortion of translation and is essential for cell viability.This group also contains chloroplast RNA splicing 2 (CRS2), which is closely related nuclear-encoded protein required for the splicing of nine group II introns in chloroplasts.

>KOG2255 consensus Peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.8e-41  Score=276.12  Aligned_cols=158  Identities=51%  Similarity=0.907  Sum_probs=138.1

Q ss_pred             CHHHHHHHcCCCCcccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEec
Q 030459            1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH   80 (177)
Q Consensus         1 viD~la~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~   80 (177)
                      ++|.||++.+++..+...++..+-+.+++.++++++|++|||.||++|.+++..|+++.++++||||||++|+|++|+|.
T Consensus        63 Ml~~larrlgv~~nt~s~~a~~~l~~v~d~~~~llrp~qymN~SgesV~kva~~y~i~~~~ivvIhDEl~l~~Gkl~Lrp  142 (224)
T KOG2255|consen   63 MLDMLARRLGVPMNTISSKALEGLGLVGDVPILLLRPQQYMNFSGESVGKVAALYKIPLRHIVVIHDELELPLGKLRLRP  142 (224)
T ss_pred             HHHHHHHHhCCcccccCcccccceeeecceeeEeeCcHhhhccccchhhhhHHhhcchheeEEEEeccccCcCceEEecc
Confidence            47999999999876544567777788899999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHH-HHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459           81 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE-RIDTALQEGVEVLKLLLSKGLTESAR  159 (177)
Q Consensus        81 gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~-~l~~~i~~a~~~~~~~~~~~~~~amn  159 (177)
                      +||++||||+||++.++.+...|+||+||||||++.+|+.+|||++|++.|++ .|+..++.    ++.++.++++.-.+
T Consensus       143 ~gs~rgHNGvrs~~~~l~g~~~fpRL~iGIGrppg~~d~~a~vLskfsp~e~ke~Let~l~~----~~~lil~~l~~~is  218 (224)
T KOG2255|consen  143 GGSHRGHNGVRSVFNCLNGRRSFPRLSIGIGRPPGNEDVKAFVLSKFSPAEQKELLETLLEH----VKTLILQGLQQSIS  218 (224)
T ss_pred             CCCccccccHHHHHhhccCCcccceeeeecCCCCCchhhhHHHHHhcChhhhHHHHHHHHhh----hHHHHHHHHHHhcc
Confidence            99999999999999999766799999999999999999999999999999998 45544444    44444555555555


Q ss_pred             hhh
Q 030459          160 HFN  162 (177)
Q Consensus       160 ~~n  162 (177)
                      .||
T Consensus       219 ~~~  221 (224)
T KOG2255|consen  219 RFN  221 (224)
T ss_pred             cCc
Confidence            665

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	177
1rym_A	212	Structure Of The Group Ii Intron Splicing Factor Cr		8e-45
1ryb_A	205	Crystal Structure Of The Chloroplast Group Ii Intro		3e-43
1ryn_A	202	Structure Of The Chloroplast Group Ii Intron Splici		4e-43
2lgj_A	191	Solution Structure Of Mspth Length = 191		1e-21
3kjz_A	191	Crystal Structure Of Native Peptidyl-Trna Hydrolase		2e-20
2jrc_A	204	Solution Structure Of Peptidyl-Trna Hydrolase From		1e-19
2z2i_A	191	Crystal Structure Of Peptidyl-Trna Hydrolase From M		2e-19
3vjr_A	197	Crystal Structure Of Peptidyl-Trna Hydrolase From E		4e-14
2pth_A	193	Peptidyl-Trna Hydrolase From Escherichia Coli Lengt		4e-14
3ofv_A	211	Crystal Structure Of Peptidyl-Trna Hydrolase From E		6e-14
4fyj_A	199	Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hy		3e-11
4dhw_A	194	Crystal Structure Of Peptidyl-Trna Hydrolase From P		3e-11
3v2i_A	222	Structure Of A Peptidyl-Trna Hydrolase (Pth) From B		2e-10
4fop_A	193	Crystal Structure Of Peptidyl-Trna Hydrolase From A		4e-10
3nea_A	207	Crystal Structure Of Peptidyl-Trna Hydrolase From F		1e-09

>pdb|1RYM|A Chain A, Structure Of The Group Ii Intron Splicing Factor Crs2 Length = 212

Iteration: 1
 Score =  176 bits (445), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 83/172 (48%), Positives = 115/172 (66%)
Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT   K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL 
Sbjct: 41  MVDRIAAEEGITMNTEQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 100
Query: 61  RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DD  LP GV               ++V+ +  G REF RL IGIG PPG+MDP+
Sbjct: 101 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 160
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYKHIRL 172
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QKYK  R+
Sbjct: 161 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQKYKFHRV 212

>pdb|1RYB|A Chain A, Crystal Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 205

Iteration: 1
 Score =  171 bits (432), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 79/165 (47%), Positives = 111/165 (67%)
Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT+  K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL 
Sbjct: 41  MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 100
Query: 61  RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DD  LP GV               ++V+ +  G REF RL IGIG PPG+MDP+
Sbjct: 101 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 160
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +Q
Sbjct: 161 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205

>pdb|1RYN|A Chain A, Structure Of The Chloroplast Group Ii Intron Splicing Factor Crs2 Length = 202

Iteration: 1
 Score =  170 bits (430), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 80/166 (48%), Positives = 111/166 (66%)
Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT   K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL 
Sbjct: 29  MVDRIAAEEGITMNTNQFKSLLGTGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 88
Query: 61  RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DD  LP GV               ++V+ +  G REF RL IGIG PPG+MDP+
Sbjct: 89  HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 148
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 166
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +QK
Sbjct: 149 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQK 194

>pdb|2LGJ|A Chain A, Solution Structure Of Mspth Length = 191

Iteration: 1
 Score = 99.0 bits (245), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 55/154 (35%), Positives = 86/154 (55%), Gaps = 6/154 (3%)
Query: 16  VHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPC 73
           VH K  A    G +    V+LAKP+ YMN SG   GPLA +Y +P  +++V HD++ +  
Sbjct: 42  VHKKSGAEVVTGRLAGTSVVLAKPRCYMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDF 101
Query: 74  GVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 133
           G                +SV +   G + F R+RIG+GRPPG+ DP AF+L+ F A  R 
Sbjct: 102 GRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTAAERA 160
Query: 134 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQKY 167
            + T +++  +  +LL+++GL E A+  NT+  +
Sbjct: 161 EVPTIVEQAADATELLIAQGL-EPAQ--NTVHAW 191

>pdb|3KJZ|A Chain A, Crystal Structure Of Native Peptidyl-Trna Hydrolase From Mycobacterium Smegmatis Length = 191

Iteration: 1
 Score = 94.7 bits (234), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 6/154 (3%)
Query: 16  VHCK--ATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPC 73
           VH K  A    G +    V+LAKP+  MN SG   GPLA +Y +P  +++V HD++ +  
Sbjct: 42  VHKKSGAEVVTGRLAGTTVVLAKPRISMNESGRQVGPLAKFYSVPPQQIVVIHDELDIDF 101
Query: 74  GVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARE 133
           G                +SV +   G + F R+RIG+GRPPG+ DP AF+L+ F +  R 
Sbjct: 102 GRIRLKLGGGEGGHNGLRSVASAL-GTKNFHRVRIGVGRPPGRKDPAAFVLENFTSAERA 160
Query: 134 RIDTALQEGVEVLKLLLSKGLTESARHFNTIQKY 167
            + T +++  +  +LL+++GL E A+  NT+  +
Sbjct: 161 EVPTIVEQAADATELLIAQGL-EPAQ--NTVHAW 191

>pdb|2JRC|A Chain A, Solution Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis H37rv Length = 204

Iteration: 1
 Score = 92.4 bits (228), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 74/137 (54%), Gaps = 4/137 (2%)
Query: 32  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
           ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct: 60  LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 92  SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
           SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ 
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 152 KGLTESARHFNTIQKYK 168
           +G+  +    N +  +K
Sbjct: 179 QGMEPAQ---NRVHAWK 192

>pdb|2Z2I|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Mycobacterium Tuberculosis Length = 191

Iteration: 1
 Score = 92.0 bits (227), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/123 (36%), Positives = 69/123 (56%), Gaps = 1/123 (0%)
Query: 32  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
           ++LAKP+ YMN SG   GPLA +Y +    ++V HDD+ L  G                +
Sbjct: 60  LVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLR 119
Query: 92  SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
           SV+    G ++F R+RIGIGRPPG+ DP AF+L+ F    R  + T  ++  +  +LL+ 
Sbjct: 120 SVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIE 178
Query: 152 KGL 154
           +G+
Sbjct: 179 QGM 181

>pdb|3VJR|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli In Complex With The Cca-Acceptor-T[psi]c Domain Of Trna Length = 197

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%)
Query: 27  VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXX 86
           +G   V L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV           
Sbjct: 57  LGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGG 116
Query: 87  XXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 146
               K +++    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     
Sbjct: 117 HNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCT 176
Query: 147 KLLLSKGLTESARHFNTIQ 165
           ++  + GLT++    +  +
Sbjct: 177 EMWFTDGLTKATNRLHAFK 195

>pdb|2PTH|A Chain A, Peptidyl-Trna Hydrolase From Escherichia Coli Length = 193

Iteration: 1
 Score = 73.9 bits (180), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/139 (28%), Positives = 69/139 (49%)
Query: 27  VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXX 86
           +G   V L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV           
Sbjct: 53  LGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGG 112
Query: 87  XXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 146
               K +++    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     
Sbjct: 113 HNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCT 172
Query: 147 KLLLSKGLTESARHFNTIQ 165
           ++  + GLT++    +  +
Sbjct: 173 EMWFTDGLTKATNRLHAFK 191

>pdb|3OFV|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Escherichia Coli, I222 Crystal Form Length = 211

Iteration: 1
 Score = 73.6 bits (179), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 40/131 (30%), Positives = 67/131 (51%)
Query: 27  VGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXX 86
           +G   V L  P T+MNLSG++   +A+++++  + +LV HD++ LP GV           
Sbjct: 74  LGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFKLGGGHGG 133
Query: 87  XXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVL 146
               K +++    N  F RLRIGIG P  +     F+L K     ++ ID A+ E     
Sbjct: 134 HNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCT 193
Query: 147 KLLLSKGLTES 157
           ++  + GLT++
Sbjct: 194 EMWFTDGLTKA 204

>pdb|4FYJ|A Chain A, Crystal Structure Of P. Aeruginosa Peptidyl-Trna Hydrolase Length = 199

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 2   IDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYK 56
           ++  A +QG+S+  V  +  FG   VG        V L  P TYMN SG+S   LA +++
Sbjct: 35  VERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR 90
Query: 57  LPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ 116
           +  + +LV HD++ +P GV               + ++        F RLR+GIG P   
Sbjct: 91  IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHS 150
Query: 117 MDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
                ++L +     +E +DT++   + VL  +L+   T + +  ++
Sbjct: 151 SLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 197

>pdb|4DHW|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Pseudomonas Aeruginosa With Adipic Acid At 2.4 Angstrom Resolution Length = 194

Iteration: 1
 Score = 64.7 bits (156), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 44/167 (26%), Positives = 78/167 (46%), Gaps = 9/167 (5%)
Query: 2   IDAFAESQGISMNTVHCKATFGQGFVGD-----APVLLAKPQTYMNLSGESTGPLAAYYK 56
           ++  A +QG+S+  V  +  FG   VG        V L  P TYMN SG+S   LA +++
Sbjct: 29  VERLAHAQGVSL--VADRKYFG--LVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFR 84
Query: 57  LPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQ 116
           +  + +LV HD++ +P GV               + ++        F RLR+GIG P   
Sbjct: 85  IAPDAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHS 144
Query: 117 MDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
                ++L +     +E +DT++   + VL  +L+   T + +  ++
Sbjct: 145 SLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 191

>pdb|3V2I|A Chain A, Structure Of A Peptidyl-Trna Hydrolase (Pth) From Burkholderia Thailandensis Length = 222

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 68/137 (49%), Gaps = 12/137 (8%)
Query: 32  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
           V L +PQTYMN SG+S   LA ++K+  N +LV HD++ LP G                K
Sbjct: 79  VHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLKLGGGSGGHNGLK 138
Query: 92  SVMNNFRGNREFARLRIGIGRPPGQM----------DPKAFLLQKFNAIARERIDTALQE 141
            +  +   ++++ RLRIGIG P   +          D   F+L+      ++ ID A++ 
Sbjct: 139 DISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIER 197
Query: 142 GVEVLKLLLSKGLTESA 158
            + V+  ++ KG TE A
Sbjct: 198 ALAVMPAVV-KGETERA 213

>pdb|4FOP|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Acinetobacter Baumannii At 1.86 A Resolution Length = 193

Iteration: 1
 Score = 60.8 bits (146), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 44/168 (26%), Positives = 77/168 (45%), Gaps = 6/168 (3%)
Query: 2   IDAFAESQGISM-NTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           ++  A+  GI++ N        G+G +    V L  P TYMN SG+S  P + +Y++   
Sbjct: 29  VEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPE 88
Query: 61  RVLVFHDDMGLPCGVXXXXXXXXXXXXXXXKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ HD++ +  GV               + ++ +   N  F RLRIGIG P  +    
Sbjct: 89  AILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHIGPN--FHRLRIGIGHPGSKERVS 146
Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQKYK 168
             +L K  +  +  +D A+   +  +KLL+   + ++    N I  YK
Sbjct: 147 GHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQA---MNQINAYK 191

>pdb|3NEA|A Chain A, Crystal Structure Of Peptidyl-Trna Hydrolase From Francisella Tularensis Length = 207

Iteration: 1
 Score = 59.3 bits (142), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 1/123 (0%)
Query: 32  VLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVXXXXXXXXXXXXXXXK 91
           V+L  P TYMN SG +   +A +YK+    +LV HD++ +  G                +
Sbjct: 79  VVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLKKGGGHGGHNGLR 138
Query: 92  SVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLS 151
           S+ N   G  ++ RLRIGIG P  +     ++L   +   ++ ID+A+  G+  L  +++
Sbjct: 139 SI-NQHLGTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIIN 197
Query: 152 KGL 154
             L
Sbjct: 198 YKL 200

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	177
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	1e-74
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	5e-68
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	1e-66
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	1e-64
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	2e-60
4fop_A	193	PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter	8e-60
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	2e-59

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A Length = 205

 Score =  221 bits (565), Expect = 1e-74
 Identities = 90/165 (54%), Positives = 123/165 (74%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT+  K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL 
Sbjct: 41  MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 100

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +  G REF RL IGIG PPG+MDP+
Sbjct: 101 HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 160

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +Q
Sbjct: 161 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 205

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A Length = 191

 Score =  204 bits (521), Expect = 5e-68
 Identities = 60/163 (36%), Positives = 89/163 (54%), Gaps = 2/163 (1%)

Query: 1   MIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
           + D  A   G          A    G      ++LAKP+ YMN SG   GPLA +Y +  
Sbjct: 28  VADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAP 87

Query: 60  NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
             ++V HDD+ L  G +RL+  GG GGHNGL+SV+    G ++F R+RIGIGRPPG+ DP
Sbjct: 88  ANIIVIHDDLDLEFGRIRLKIGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDP 146

Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
            AF+L+ F    R  + T  ++  +  +LL+ +G+  +    +
Sbjct: 147 AAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQNRVH 189

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A Length = 194

 Score =  200 bits (512), Expect = 1e-66
 Identities = 50/164 (30%), Positives = 86/164 (52%), Gaps = 1/164 (0%)

Query: 1   MIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
            ++  A +QG+S+          G+       V L  P TYMN SG+S   LA ++++  
Sbjct: 28  FVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAP 87

Query: 60  NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
           + +LV HD++ +P GV +L+  GGHGGHNGL+ ++        F RLR+GIG P      
Sbjct: 88  DAILVAHDELDMPPGVAKLKTGGGHGGHNGLRDIIAQLGNQNSFHRLRLGIGHPGHSSLV 147

Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
             ++L +     +E +DT++   + VL  +L+   T + +  ++
Sbjct: 148 SGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAMQKLHS 191

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A Length = 193

 Score =  195 bits (499), Expect = 1e-64
 Identities = 52/166 (31%), Positives = 86/166 (51%), Gaps = 1/166 (0%)

Query: 2   IDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           +D  AE     +           +  +G   V L  P T+MNLSG++   +A+++++  +
Sbjct: 27  VDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPD 86

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +LV HD++ LP GV + +  GGHGGHNGLK +++    N  F RLRIGIG P  +    
Sbjct: 87  EILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKVV 146

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 166
            F+L K     ++ ID A+ E     ++  + GLT++    +  + 
Sbjct: 147 GFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLHAFKA 192

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp} Length = 207

 Score =  185 bits (473), Expect = 2e-60
 Identities = 48/156 (30%), Positives = 81/156 (51%), Gaps = 2/156 (1%)

Query: 2   IDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           I   A+    S ++         +  +    V+L  P TYMN SG +   +A +YK+   
Sbjct: 48  IAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPA 107

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +LV HD++ +  G +RL+  GGHGGHNGL+S+  +  G  ++ RLRIGIG P  +    
Sbjct: 108 EILVVHDELDIDSGEIRLKKGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVA 166

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTE 156
            ++L   +   ++ ID+A+  G+  L  +++  L  
Sbjct: 167 NYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLEP 202

>4fop_A PTH, peptidyl-tRNA hydrolase; 1.86A {Acinetobacter baumannii} Length = 193

 Score =  183 bits (467), Expect = 8e-60
 Identities = 50/166 (30%), Positives = 86/166 (51%), Gaps = 3/166 (1%)

Query: 2   IDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           ++  A+  GI++          G+G +    V L  P TYMN SG+S  P + +Y++   
Sbjct: 29  VEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPE 88

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ HD++ +  GV+RL+  GGHGGHNGL+ ++ +      F RLRIGIG P  +    
Sbjct: 89  AILIAHDELDMNPGVIRLKTGGGHGGHNGLRDIVPHI--GPNFHRLRIGIGHPGSKERVS 146

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQK 166
             +L K  +  +  +D A+   +  +KLL+   + ++    N  + 
Sbjct: 147 GHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMNQINAYKP 192

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264} Length = 222

 Score =  183 bits (466), Expect = 2e-59
 Identities = 50/173 (28%), Positives = 86/173 (49%), Gaps = 12/173 (6%)

Query: 2   IDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           +D  A   G ++         + +  +    V L +PQTYMN SG+S   LA ++K+  N
Sbjct: 48  VDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPN 107

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPP------ 114
            +LV HD++ LP G ++L+  GG GGHNGLK +  +   ++++ RLRIGIG P       
Sbjct: 108 EILVAHDELDLPPGAVKLKLGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPES 166

Query: 115 ----GQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNT 163
                + D   F+L+      ++ ID A++  + V+  ++      +    + 
Sbjct: 167 ARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVMPAVVKGETERAMMQLHR 219

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	177
4fyj_A	199	PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas a	100.0
2pth_A	193	Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli}	100.0
2z2i_A	191	PTH, peptidyl-tRNA hydrolase; protein synthesis; 1	100.0
4hoy_A	193	PTH, peptidyl-tRNA hydrolase; enzyme, molecular co	100.0
1ryb_A	205	CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP	100.0
3v2i_A	222	PTH, peptidyl-tRNA hydrolase; ssgcid, seattle stru	100.0
3nea_A	207	PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella t	100.0
4fno_A	194	PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas a	100.0

>4fyj_A PTH, peptidyl-tRNA hydrolase; 1.77A {Pseudomonas aeruginosa} PDB: 4fno_A 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=2.2e-63  Score=408.26  Aligned_cols=163  Identities=32%  Similarity=0.584  Sum_probs=157.1

Q ss_pred             CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||++++++|.+ .+|.++++++.+++++++|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus        34 vlD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdldLp~G~irlk  113 (199)
T 4fyj_A           34 FVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLK  113 (199)
T ss_dssp             HHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhCChHHHHHHHHHhCCCHHHEEEEEecCCCCCceEEEe
Confidence            589999999999864 5789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCC-CcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNR-EFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA  158 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~-~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~am  158 (177)
                      .+||+|||||||||+++| ||+ +|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++||
T Consensus       114 ~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~am  192 (199)
T 4fyj_A          114 TGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAM  192 (199)
T ss_dssp             ESCCCTTCHHHHHHHHHH-CSSSCCEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHHHHHHTCHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHh-CCccceEEEEEEeCCCCCCCchhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            999999999999999999 798 999999999999887899999999999999999999999999999999999999999


Q ss_pred             Hhhhhh
Q 030459          159 RHFNTI  164 (177)
Q Consensus       159 n~~n~~  164 (177)
                      |+||++
T Consensus       193 n~~n~~  198 (199)
T 4fyj_A          193 QKLHSQ  198 (199)
T ss_dssp             HHHTTC
T ss_pred             HHHhCC
Confidence            999974

>2pth_A Peptidyl-tRNA hydrolase; 1.20A {Escherichia coli} SCOP: c.56.3.1 PDB: 3ofv_A

Probab=100.00  E-value=2.6e-63  Score=406.36  Aligned_cols=163  Identities=33%  Similarity=0.615  Sum_probs=156.1

Q ss_pred             CHHHHHHHcCCCCc-ccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||++++++|. +.+|+++++++.+.+++|+|+||+||||+||++|+++++||+|++++|||||||||||+|++|+|
T Consensus        26 viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdldlp~G~irlk  105 (193)
T 2pth_A           26 FVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFK  105 (193)
T ss_dssp             HHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHHTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred             HHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchHhcCcHHHHHHHHHhCCCHHHEEEEecccCCCCceEEEe
Confidence            58999999999987 56799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcC-CCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRG-NREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA  158 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~g-t~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~am  158 (177)
                      .+||+|||||||||+++| | |++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++||
T Consensus       106 ~gGs~gGHNGlkSI~~~L-g~t~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~am  184 (193)
T 2pth_A          106 LGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKAT  184 (193)
T ss_dssp             ESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cCCCCCCCCCHHHHHHHh-CCCCCeEEEEEEeCCCCCCCchhHHhhCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            999999999999999999 7 89999999999999655579999999999999999999999999999999999999999


Q ss_pred             Hhhhhh
Q 030459          159 RHFNTI  164 (177)
Q Consensus       159 n~~n~~  164 (177)
                      |+||++
T Consensus       185 n~~n~~  190 (193)
T 2pth_A          185 NRLHAF  190 (193)
T ss_dssp             HHHHHT
T ss_pred             HHHhCc
Confidence            999974

>2z2i_A PTH, peptidyl-tRNA hydrolase; protein synthesis; 1.98A {Mycobacterium tuberculosis} PDB: 2z2j_A 2z2k_A 3tck_A 3tcn_A 3td2_A 3td6_A 2jrc_A 3p2j_A 3kk0_A 3kjz_A

Probab=100.00  E-value=2.9e-63  Score=405.46  Aligned_cols=162  Identities=37%  Similarity=0.735  Sum_probs=145.1

Q ss_pred             CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||+++++++.+ +||+++++++.+.+++|+|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus        28 viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~L~KP~TyMNlSG~aV~~~~~~yki~~~~ilVihDdldlp~G~irlk  107 (191)
T 2z2i_A           28 VADLLAARLGAKFKAHKRSGAEVATGRSAGRSLVLAKPRCYMNESGRQIGPLAKFYSVAPANIIVIHDDLDLEFGRIRLK  107 (191)
T ss_dssp             HHHHHHHHTTCCCEECTTTSSEEEEEEETTEEEEEEECSSCGGGTHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred             HHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEcCCchhhcccHHHHHHHHHhCCCHHHEEEEecccCCCCceEEEe
Confidence            589999999999875 4689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR  159 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn  159 (177)
                      .+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.++++++.|++|++.|+++++++|||
T Consensus       108 ~gGs~gGHNGlkSI~~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~amn  186 (191)
T 2z2i_A          108 IGGGEGGHNGLRSVVAAL-GTKDFQRVRIGIGRPPGRKDPAAFVLENFTPAERAEVPTICEQAADATELLIEQGMEPAQN  186 (191)
T ss_dssp             ESCCCTTCHHHHHHHHHH-TCSCSEEEEEECCCCCTTSCHHHHHTSBCCHHHHTTHHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCCCCCcCCHHHHHHHh-CCCCeEEEEEeeCCCCCCCchhhHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            999999999999999999 7999999999999997556799999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 030459          160 HFNT  163 (177)
Q Consensus       160 ~~n~  163 (177)
                      +||+
T Consensus       187 ~~n~  190 (191)
T 2z2i_A          187 RVHA  190 (191)
T ss_dssp             ----
T ss_pred             HHhC
Confidence            9996

>4hoy_A PTH, peptidyl-tRNA hydrolase; enzyme, molecular conformation, INH hydrolase; 1.78A {Acinetobacter baumannii} PDB: 4fot_A 4fop_A

Probab=100.00  E-value=1.1e-62  Score=402.65  Aligned_cols=164  Identities=31%  Similarity=0.607  Sum_probs=157.5

Q ss_pred             CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||+++++++.. .++.++++++.+.+++++|+||+||||+||++|+++++||+|+++++||||||||||+|++|+|
T Consensus        28 ~ld~La~~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~aV~~~~~~~ki~~~~ilVihDdldL~~G~irlk  107 (193)
T 4hoy_A           28 FVEQLADKYGITLKNDPKFHGISGRGNIEGHDVRLLLPMTYMNRSGQSVVPFSKFYQIAPEAILIAHDELDMNPGVIRLK  107 (193)
T ss_dssp             HHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred             HHHHHHHHcCCCccccccccEEEEEEEECCEEEEEEeCCCccccchhhHHHHHHHcCCCchheEEeeeccccccCceeec
Confidence            589999999999865 5789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR  159 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn  159 (177)
                      .+||+|||||||||+++| || ||+|||||||||+.+.++++|||++|+++|++.++++++.|+++++.|+++++++|||
T Consensus       108 ~~G~~gGHNGlkSI~~~l-gt-df~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~i~~~~~~~~~~amn  185 (193)
T 4hoy_A          108 TGGGHGGHNGLRDIVPHI-GP-NFHRLRIGIGHPGSKERVSGHVLGKAPSNEQSLMDGAIDHALSKVKLLVQGQVPQAMN  185 (193)
T ss_dssp             ESCCCTTCHHHHTTHHHH-CS-CSEEEEEECCCCSSGGGHHHHHTSBCCHHHHHHHHHHHHHHHHTHHHHHTTCHHHHHH
T ss_pred             cCCCCCCcCCccchhhHh-cc-ccceEEEeeCCCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHH
Confidence            999999999999999999 67 7999999999999888999999999999999999999999999999999999999999


Q ss_pred             hhhhhhH
Q 030459          160 HFNTIQK  166 (177)
Q Consensus       160 ~~n~~~~  166 (177)
                      +||++++
T Consensus       186 ~~n~~kp  192 (193)
T 4hoy_A          186 QINAYKP  192 (193)
T ss_dssp             HHHTCCC
T ss_pred             HHhCCCC
Confidence            9998754

>1ryb_A CRS2; alpha-beta, hydrolase; 1.70A {Zea mays} SCOP: c.56.3.1 PDB: 1rym_A 1ryn_A

Probab=100.00  E-value=1.8e-62  Score=404.32  Aligned_cols=163  Identities=55%  Similarity=1.000  Sum_probs=151.6

Q ss_pred             CHHHHHHHcCCCCcccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEec
Q 030459            1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH   80 (177)
Q Consensus         1 viD~la~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~   80 (177)
                      +||+||+++++++.+.+|+++++++.+.+++|+|+||+||||+||++|+++++||+|++++|||||||||||+|++|+|.
T Consensus        41 viD~La~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~sV~~~~~~yki~~~~ilVihDdLdLp~G~iRlk~  120 (205)
T 1ryb_A           41 MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQK  120 (205)
T ss_dssp             HHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEES
T ss_pred             HHHHHHHHcCCCcccccccEEEEEEEECCEEEEEEcCCchhhccCHHHHHHHHHhCCCHHHEEEEeecccCCCCeEEEee
Confidence            58999999999998778999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHh
Q 030459           81 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH  160 (177)
Q Consensus        81 gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn~  160 (177)
                      +||+|||||||||+++|.||++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++|||+
T Consensus       121 gGs~gGHNGLkSI~~~L~gt~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~amn~  200 (205)
T 1ryb_A          121 KGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTER  200 (205)
T ss_dssp             SCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             CCCCCCCCCHHHHHHHhcCCCCeEEEEEecCCCCCCCchhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
Confidence            99999999999999999338999999999999976567999999999999999999999999999999999999999999


Q ss_pred             hhh
Q 030459          161 FNT  163 (177)
Q Consensus       161 ~n~  163 (177)
                      ||.
T Consensus       201 ~n~  203 (205)
T 1ryb_A          201 FNL  203 (205)
T ss_dssp             CCC
T ss_pred             Hhc
Confidence            996

>3v2i_A PTH, peptidyl-tRNA hydrolase; ssgcid, seattle structural genomics center for infectious DI RNA; HET: CIT; 1.65A {Burkholderia thailandensis E264}

Probab=100.00  E-value=5.7e-62  Score=405.40  Aligned_cols=164  Identities=30%  Similarity=0.556  Sum_probs=151.8

Q ss_pred             CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||++++++|.+ ++|.++++++.+.+++|+|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus        47 vvD~La~~~~~~~~~~~kf~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDdLDLp~G~iRlk  126 (222)
T 3v2i_A           47 LVDQLAREAGATLRDERRFHGFYAKARLYGEEVHLLEPQTYMNRSGQSVVALAHFFKILPNEILVAHDELDLPPGAVKLK  126 (222)
T ss_dssp             HHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHHTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccccceEEEEEEECCeEEEEEeCCcchhcccHHHHHHHHHhCCCHHHEEEEEecCCCCCceEEEe
Confidence            589999999999876 4689999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCC----------CCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRP----------PGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLL  149 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp----------~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~  149 (177)
                      .+||+|||||||||+++| ||++|+|||||||||          +.+.++++|||++|+++|++.|+++++.|++|++.|
T Consensus       127 ~gGs~gGHNGLKSI~~~L-gt~~f~RlRIGIGrP~~~~p~~~~~~~~~~v~~yVL~~fs~~E~~~l~~~i~~a~~av~~~  205 (222)
T 3v2i_A          127 LGGGSGGHNGLKDISAHL-SSQQYWRLRIGIGHPRDMIPESARAGAKPDVANFVLKPPRKEEQDVIDAAIERALAVMPAV  205 (222)
T ss_dssp             ECCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCTTTTCC---------CHHHHTTSCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCHHHHHHHh-CCCCeEEEEEEcCCCcccccccccCCCCCcHHHHhccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999 799999999999999          556789999999999999999999999999999999


Q ss_pred             HhcCHHHHHHhhhhhh
Q 030459          150 LSKGLTESARHFNTIQ  165 (177)
Q Consensus       150 ~~~~~~~amn~~n~~~  165 (177)
                      +++++++|||+||++.
T Consensus       206 ~~~~~~~amn~~n~~~  221 (222)
T 3v2i_A          206 VKGETERAMMQLHRNG  221 (222)
T ss_dssp             HTTCHHHHHHHC----
T ss_pred             HHCCHHHHHHHHhCCC
Confidence            9999999999999753

>3nea_A PTH, peptidyl-tRNA hydrolase; 2.25A {Francisella tularensis subsp}

Probab=100.00  E-value=5.4e-62  Score=401.89  Aligned_cols=160  Identities=30%  Similarity=0.576  Sum_probs=154.5

Q ss_pred             CHHHHHHHcCCCCccc-ccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNTV-HCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~~-k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||++++++|.+. ||.++++++.+++++++|+||+||||+||++|+++++||+|+|++|||||||||||+|++|+|
T Consensus        47 vvD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~~yki~~e~ilVihDdLDLp~G~iRlk  126 (207)
T 3nea_A           47 FIAKIAQDNNQSFSSNPKLNCNLAKVSIDYNNVVLVFPTTYMNNSGLAVSKVANFYKIAPAEILVVHDELDIDSGEIRLK  126 (207)
T ss_dssp             HHHHHHHHTTCCCEEEGGGTEEEEEEEETTEEEEEEEESSCGGGHHHHHHHHHHHHTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred             HHHHHHHHcCCCccccccccEEEEEEEECCeEEEEEeCCcchhCCcHHHHHHHHHhCCCHHHEEEEEEcCCCCCceEEEe
Confidence            5899999999998765 799999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESAR  159 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn  159 (177)
                      .+||+|||||||||+++| ||++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++|||
T Consensus       127 ~gGs~gGHNGLkSIi~~L-gt~~f~RlRiGIGrP~~~~~v~~yVL~~fs~~E~~~l~~~i~~a~~a~~~~~~~~~~~amn  205 (207)
T 3nea_A          127 KGGGHGGHNGLRSINQHL-GTNDYLRLRIGIGHPGHKSKVANYVLSNPSIAQKKDIDSAIDNGICFLDDIINYKLEPVMQ  205 (207)
T ss_dssp             ESCCCTTCHHHHHHHHHH-TCCCSEEEEEECCCCSSGGGHHHHHTSCCCHHHHHHHHHHHHHHHHTHHHHHTTCCCSCST
T ss_pred             cCCCCCCCCCHHHHHHHh-CCCCeeEEEEEeCCCCCCCchHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHh
Confidence            999999999999999999 7999999999999998878999999999999999999999999999999999999999998


Q ss_pred             hh
Q 030459          160 HF  161 (177)
Q Consensus       160 ~~  161 (177)
                      ++
T Consensus       206 ~~  207 (207)
T 3nea_A          206 KL  207 (207)
T ss_dssp             TC
T ss_pred             cC
Confidence            74

>4fno_A PTH, peptidyl-tRNA hydrolase; 2.25A {Pseudomonas aeruginosa} PDB: 4djj_A* 4erx_A 4dhw_A

Probab=100.00  E-value=1.8e-63  Score=407.45  Aligned_cols=164  Identities=32%  Similarity=0.580  Sum_probs=155.9

Q ss_pred             CHHHHHHHcCCCCc-ccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMN-TVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~-~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      +||+||+++++++. +.+|+++++++.+.+++|+|+||+||||+||++|+++++||+|++++|||||||||||+|++|+|
T Consensus        28 viD~La~~~~~~~~~~~k~~~~~~~~~~~g~~v~LlKP~TyMNlSG~aV~~~~~fyki~~~~ilVihDdldLp~G~irlk  107 (194)
T 4fno_A           28 FVERLAHAQGVSLVADRKYFGLVGKFSHQGKDVRLLIPTTYMNRSGQSVAALAGFFRIAPDAILVAHDELDMPPGVAKLK  107 (194)
Confidence            68999999999986 45789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCC-CCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA  158 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt-~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~am  158 (177)
                      .+||+|||||||||+++| || ++|+|||||||||+.+.++++|||++|+++|++.|+++++.|++|++.|+++++++||
T Consensus       108 ~gGs~gGHNGLkSI~~~L-gt~~~f~RlRiGIGrP~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~a~~~~~~~~~~~am  186 (194)
T 4fno_A          108 TGGGHGGHNGLRDIIAQL-GNQNSFHRLRLGIGHPGHSSLVSGYVLGRAPRSEQELLDTSIDFALGVLPEMLAGDWTRAM  186 (194)
Confidence            999999999999999999 79 8999999999999655579999999999999999999999999999999999999999


Q ss_pred             Hhhhhhh
Q 030459          159 RHFNTIQ  165 (177)
Q Consensus       159 n~~n~~~  165 (177)
                      |+||..+
T Consensus       187 n~~n~~k  193 (194)
T 4fno_A          187 QKLHSQK  193 (194)
Confidence            9999743

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	177
d1ryba_	191	c.56.3.1 (A:) Chloroplast group II intron splicing	4e-38
d2ptha_	193	c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia	4e-31

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]} Length = 191

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

 Score =  127 bits (319), Expect = 4e-38
 Identities = 90/165 (54%), Positives = 123/165 (74%)

Query: 1   MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLN 60
           M+D  A  +GI+MNT+  K+  G G +G+ PVL+ KPQ+YMN SGE+ GPLAAYY++PL 
Sbjct: 27  MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLR 86

Query: 61  RVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPK 120
            +L+ +DD  LP GVLRL+  GGHG HNGL++V+ +  G REF RL IGIG PPG+MDP+
Sbjct: 87  HILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPR 146

Query: 121 AFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFNTIQ 165
           AFLLQKF++  R +IDTAL++GV+ ++ L+ KG + S   FN +Q
Sbjct: 147 AFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTERFNLVQ 191

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]} Length = 193

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

 Score =  109 bits (273), Expect = 4e-31
 Identities = 52/163 (31%), Positives = 85/163 (52%), Gaps = 1/163 (0%)

Query: 1   MIDAFAESQGISMNTVH-CKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPL 59
            +D  AE     +           +  +G   V L  P T+MNLSG++   +A+++++  
Sbjct: 26  FVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINP 85

Query: 60  NRVLVFHDDMGLPCGVLRLRHNGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDP 119
           + +LV HD++ LP GV + +  GGHGGHNGLK +++    N  F RLRIGIG P  +   
Sbjct: 86  DEILVAHDELDLPPGVAKFKLGGGHGGHNGLKDIISKLGNNPNFHRLRIGIGHPGDKNKV 145

Query: 120 KAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARHFN 162
             F+L K     ++ ID A+ E     ++  + GLT++    +
Sbjct: 146 VGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKATNRLH 188

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	177
d1ryba_	191	Chloroplast group II intron splicing factor Crs2 {	100.0
d2ptha_	193	Peptidyl-tRNA hydrolase {Escherichia coli [TaxId:	100.0

>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor Crs2 {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Chloroplast group II intron splicing factor Crs2
species: Maize (Zea mays) [TaxId: 4577]

Probab=100.00  E-value=8.5e-60  Score=383.09  Aligned_cols=164  Identities=54%  Similarity=1.001  Sum_probs=152.6

Q ss_pred             CHHHHHHHcCCCCcccccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEec
Q 030459            1 MIDAFAESQGISMNTVHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLRH   80 (177)
Q Consensus         1 viD~la~~~~~~~~~~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk~   80 (177)
                      ++|+||++++++++..++.++++...+++++++|+||+||||+||.+|++++++|++++++|+|||||+|||+|++|+|.
T Consensus        27 ~ld~la~~~~~~~~~~k~~~~~~~~~~~~~~v~L~kP~tyMN~SG~av~~~~~~~~i~~~~ilVihDDldl~~G~irlk~  106 (191)
T d1ryba_          27 MVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEAIGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQK  106 (191)
T ss_dssp             HHHHHHHHTTCCCCEEETTEEEEEEEETTEEEEEEEECSCGGGHHHHHHHHHHHTTCCGGGEEEEEEETTSCTTCEEEES
T ss_pred             HHHHHHHHcCCCcccccccceEEEEeccCceEEEEecCcccccccHHHHHHHHhhccCcceeEEEEcccccccCceeecc
Confidence            58999999999988778889999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCchhhHHHhhcCCCCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHh
Q 030459           81 NGGHGGHNGLKSVMNNFRGNREFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESARH  160 (177)
Q Consensus        81 gGs~~GHNGlkSI~~~l~gt~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~amn~  160 (177)
                      +||+|||||||||+++|++|++|+|||||||||+.+.++++|||++|+++|++.++.+++.++++++.|+.+++++|||+
T Consensus       107 ~Gs~gGHNGlkSIi~~L~gt~~f~RlriGIg~p~~~~~~~~~VL~~f~~~E~~~l~~~~~~~~~~~~~~i~~~~~~~mn~  186 (191)
T d1ryba_         107 KGGHGRHNGLQNVIEHLDGRREFPRLSIGIGSPPGKMDPRAFLLQKFSSEERVQIDTALEQGVDAVRTLVLKGFSGSTER  186 (191)
T ss_dssp             SCCCTTCHHHHHHHHHTTTCCCSCEEEEECCCCSTTCCHHHHHTSBCCHHHHHHHHHHHHHHHHHHHHHHHHC-----CC
T ss_pred             CCCCCcCcchhhHHHHhCCchheEEEeecCCCCcccCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence            99999999999999999556789999999999988789999999999999999999999999999999999999999999


Q ss_pred             hhhh
Q 030459          161 FNTI  164 (177)
Q Consensus       161 ~n~~  164 (177)
                      ||..
T Consensus       187 ~N~~  190 (191)
T d1ryba_         187 FNLV  190 (191)
T ss_dssp             CCCC
T ss_pred             hhCC
Confidence            9974

>d2ptha_ c.56.3.1 (A:) Peptidyl-tRNA hydrolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Phosphorylase/hydrolase-like
superfamily: Peptidyl-tRNA hydrolase-like
family: Peptidyl-tRNA hydrolase-like
domain: Peptidyl-tRNA hydrolase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=2.9e-59  Score=380.38  Aligned_cols=165  Identities=32%  Similarity=0.610  Sum_probs=157.1

Q ss_pred             CHHHHHHHcCCCCcc-cccceeEEEEEECCeeEEEEecCcccccccccHHHHHHhcCCCCCcEEEEEecCCCCCceEEEe
Q 030459            1 MIDAFAESQGISMNT-VHCKATFGQGFVGDAPVLLAKPQTYMNLSGESTGPLAAYYKLPLNRVLVFHDDMGLPCGVLRLR   79 (177)
Q Consensus         1 viD~la~~~~~~~~~-~k~~~~~~~~~~~~~~v~l~kP~TyMN~SG~~V~~~~~~~ki~~~~ilVihDdldl~~G~irlk   79 (177)
                      ++|.||+++++++.. +++.+.++...+.+.+++|+||+||||+||.+|++++++|++++++++|||||+|+|+|++|+|
T Consensus        26 ~ld~la~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~kP~tyMN~SG~~v~~~~~~~~i~~~~ilVihDDldl~~G~irlk  105 (193)
T d2ptha_          26 FVDLLAERLRAPLREEAKFFGYTSRVTLGGEDVRLLVPTTFMNLSGKAVAAMASFFRINPDEILVAHDELDLPPGVAKFK  105 (193)
T ss_dssp             HHHHHHHHHTCCCEEEGGGTEEEEEEEETTEEEEEEEECSCGGGTHHHHHHHHHHHTCCGGGEEEEEEETTSCTTCEEEE
T ss_pred             HHHHHHHHcCCCcccccccceeeeeeeecCceEEEEecceeccccchhHHHHHHHhCCCHHHeEEEecchhccCCCcccc
Confidence            589999999999864 4688899999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCCCCCCchhhHHHhhcCC-CCcceEEEeecCCCCCCCccccccCcCCHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Q 030459           80 HNGGHGGHNGLKSVMNNFRGN-REFARLRIGIGRPPGQMDPKAFLLQKFNAIARERIDTALQEGVEVLKLLLSKGLTESA  158 (177)
Q Consensus        80 ~gGs~~GHNGlkSI~~~l~gt-~~f~RlrIGIGrp~~~~~v~~yVL~~f~~~E~~~l~~~i~~a~~~~~~~~~~~~~~am  158 (177)
                      .+||+|||||||||+++| |+ ++|+|||||||||+.+.++++|||++|+++|++.++++++.++++++.|+++++++||
T Consensus       106 ~~Gs~gGHNGlkSI~~~L-G~~~~f~RlriGIG~P~~~~~v~~yVL~~fs~~E~~~l~~~i~~~~~~i~~~i~~g~~~am  184 (193)
T d2ptha_         106 LGGGHGGHNGLKDIISKL-GNNPNFHRLRIGIGHPGDKNKVVGFVLGKPPVSEQKLIDEAIDEAARCTEMWFTDGLTKAT  184 (193)
T ss_dssp             ESCCCTTCHHHHHHHHHT-TSCCCSEEEEEECCCCSSHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred             cCCCccccccHHHHHHHh-hcccchheeeeeccCCcccCCccceeCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHH
Confidence            999999999999999999 55 5899999999999887789999999999999999999999999999999999999999


Q ss_pred             HhhhhhhH
Q 030459          159 RHFNTIQK  166 (177)
Q Consensus       159 n~~n~~~~  166 (177)
                      |+||+.++
T Consensus       185 n~~N~~k~  192 (193)
T d2ptha_         185 NRLHAFKA  192 (193)
T ss_dssp             HHHHHTTT
T ss_pred             HHHhCcCC
Confidence            99999765