Citrus Sinensis ID: 030580

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-----
Protein Sequence
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccHHHHHHHHHccccccccccccccccEEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccEEEEEEEEccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEccccccccccccccccccccccccccccccccHHHHHccccccHHccccEEEEEccccccccccccccccccEEEEEEEEEEcccHHHHHHHHHHHcccEHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHEEEEEEEEEEEEEEEEEEEEEccEc
Coil and Loop (DISEMBL)
mmisnttrillpsppptclatrqldhnplilrrdqagftsrtdfsrkLSHTHNEIFNSKKIISSAQkrgisppnnrnktnkkaEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILElmpyracyPIFKLIYSAAAngvhnmgfNEASLVIAKAEVneatsakrprpkaqgre
Flexible Loop (DISEMBL)
mmisnttrillpsppptCLATRQLDHNPLILRRDqagftsrtdfsrklshthneifnskkiissaqkrgisppnnrnktnkkAEVSASArylhmsahkvrrviDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEvneatsakrprpkaqgre
Low Complexity Region (SEG)
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE
Disordered region (IsUnstruct)
******************************************************************************************YLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAK********************
Disordered Region (DISOPRED)
**********LPSP********QLDHNPLIL****************LSHTHN**********************************SARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQG**
Disordered Region (DISEMBL)
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNN***********ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVN****************
Disordered Region (DISPRO)
***SNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISP******TNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQ***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MMISNTTRILLPSPPPTCLATRQLDHNPLILRRDQAGFTSRTDFSRKLSHTHNEIFNSKKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	175	2.2.26 [Sep-21-2011]
Q49KV9	160	50S ribosomal protein L22	N/A	no	0.56	0.612	0.757	1e-37
Q09G06	154	50S ribosomal protein L22	N/A	no	0.571	0.649	0.72	9e-37
A6MM76	156	50S ribosomal protein L22	N/A	no	0.554	0.621	0.731	9e-37
A4GYV0	132	50S ribosomal protein L22	yes	no	0.52	0.689	0.769	2e-36
B1A974	142	50S ribosomal protein L22	N/A	no	0.571	0.704	0.69	2e-36
Q14FB8	132	50S ribosomal protein L22	N/A	no	0.52	0.689	0.769	3e-36
B1NWI9	133	50S ribosomal protein L22	N/A	no	0.52	0.684	0.747	2e-35
P24283	149	50S ribosomal protein L22	N/A	no	0.554	0.651	0.717	2e-35
A8SEE3	142	50S ribosomal protein L22	N/A	no	0.554	0.683	0.711	4e-35
Q09WX8	140	50S ribosomal protein L22	N/A	no	0.565	0.707	0.686	6e-35

>sp|Q49KV9|RK22_EUCGG 50S ribosomal protein L22, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl22 PE=3 SV=1

 Score =  155 bits (392), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 85/99 (85%), Gaps = 1/99 (1%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           RNK N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YS
Sbjct: 5   RNK-NLYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAAN  HNMGFNEASLVI+KAEVNE T+ K+ +P+A+GR
Sbjct: 64  AAANASHNMGFNEASLVISKAEVNEGTTMKKLKPRARGR 102

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.
Eucalyptus globulus subsp. globulus (taxid: 71271)

>sp|Q09G06|RK22_PLAOC 50S ribosomal protein L22, chloroplastic OS=Platanus occidentalis GN=rpl22 PE=3 SV=1

 Score =  152 bits (385), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 72/100 (72%), Positives = 83/100 (83%)

Query: 75  NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
           N+ K N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+Y
Sbjct: 3   NKIKKNPDTEVYALGQHICMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVY 62

Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           SAAAN  HNMGFNEA L+I+KAEVNE  + KR +P+A+GR
Sbjct: 63  SAAANASHNMGFNEADLIISKAEVNEGPTMKRLKPRARGR 102

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Platanus occidentalis (taxid: 4403)

>sp|A6MM76|RK22_BUXMI 50S ribosomal protein L22, chloroplastic OS=Buxus microphylla GN=rpl22 PE=3 SV=1

 Score =  152 bits (384), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 71/97 (73%), Positives = 82/97 (84%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K N+ AEV A  +++ MSAHK RRVIDQIRGRSYEE LMILELMPYRACYPIFKL+YSAA
Sbjct: 3   KKNRDAEVYALGQHICMSAHKARRVIDQIRGRSYEEALMILELMPYRACYPIFKLVYSAA 62

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AN  HNMGFNEA  VI+KAEVN+ TS K+ +P+A+GR
Sbjct: 63  ANASHNMGFNEADSVISKAEVNDGTSVKKLKPRARGR 99

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Buxus microphylla (taxid: 153571)

>sp|A4GYV0|RK22_POPTR 50S ribosomal protein L22, chloroplastic OS=Populus trichocarpa GN=rpl22 PE=3 SV=1

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 79/91 (86%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E SAS  Y+ MSAHK RR+IDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HN
Sbjct: 11  EASASGFYISMSAHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHN 70

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           MG NEASLVI+KAEVNE  + K+ +P+A+GR
Sbjct: 71  MGLNEASLVISKAEVNEGATMKKFKPRARGR 101

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Populus trichocarpa (taxid: 3694)

>sp|B1A974|RK22_CARPA 50S ribosomal protein L22, chloroplastic OS=Carica papaya GN=rpl22 PE=3 SV=1

 Score =  151 bits (381), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 69/100 (69%), Positives = 83/100 (83%)

Query: 75  NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
           ++ K     +V A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+Y
Sbjct: 3   SKRKKKSDTKVYALGQHIRMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVY 62

Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           SAAAN  HNMGFNE SLV++KAEVNE T+ K+ +P+A+GR
Sbjct: 63  SAAANASHNMGFNETSLVVSKAEVNEGTTVKKFKPRARGR 102

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Carica papaya (taxid: 3649)

>sp|Q14FB8|RK22_POPAL 50S ribosomal protein L22, chloroplastic OS=Populus alba GN=rpl22 PE=3 SV=1

 Score =  150 bits (380), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 70/91 (76%), Positives = 79/91 (86%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E SAS  Y+ MSAHK RR+IDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAAN  HN
Sbjct: 11  EASASGFYISMSAHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANASHN 70

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           MG NEASLVI+KAEVNE  + K+ +P+A+GR
Sbjct: 71  MGLNEASLVISKAEVNEGATMKKFKPRARGR 101

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Populus alba (taxid: 43335)

>sp|B1NWI9|RK22_MANES 50S ribosomal protein L22, chloroplastic OS=Manihot esculenta GN=rpl22 PE=3 SV=1

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 68/91 (74%), Positives = 80/91 (87%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           EV A  +++ MS HK RR+IDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAAN  HN
Sbjct: 13  EVYALGQHICMSPHKARRIIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANASHN 72

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           MGFNEA+L+I+KAEVNE T+ K+ +P+A+GR
Sbjct: 73  MGFNEANLIISKAEVNEGTTVKKLKPQARGR 103

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Manihot esculenta (taxid: 3983)

>sp|P24283|RK22_PELHO 50S ribosomal protein L22, chloroplastic OS=Pelargonium hortorum GN=rpl22-A PE=3 SV=2

 Score =  147 bits (372), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 83/99 (83%), Gaps = 2/99 (2%)

Query: 78  KTNKK--AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           K NKK   EVSA  +Y+ MS HK RRVIDQIRGRSYEETLMILELMPYRACYPI KLI S
Sbjct: 4   KKNKKRYTEVSALGKYIPMSTHKARRVIDQIRGRSYEETLMILELMPYRACYPILKLISS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAANG+HNM F+E SL+I+KAEVNE  +AK+ +P+A+G+
Sbjct: 64  AAANGIHNMNFDETSLIISKAEVNEGPTAKKFKPRAKGQ 102

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Pelargonium hortorum (taxid: 4031)

>sp|A8SEE3|RK22_CERDE 50S ribosomal protein L22, chloroplastic OS=Ceratophyllum demersum GN=rpl22 PE=3 SV=1

 Score =  147 bits (371), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 69/97 (71%), Positives = 78/97 (80%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K   + EV A A+Y+HMSAHK RRV+DQIRGRSYEETLMILELMPYRA YPIFKL+YSAA
Sbjct: 3   KRKSRTEVKAVAQYIHMSAHKARRVVDQIRGRSYEETLMILELMPYRASYPIFKLVYSAA 62

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AN  HNMGFNEA   I+KAEVNE    K+  P+A+GR
Sbjct: 63  ANANHNMGFNEADSFISKAEVNEGVIVKKLNPQARGR 99

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Ceratophyllum demersum (taxid: 4428)

>sp|Q09WX8|RK22_MORIN 50S ribosomal protein L22, chloroplastic OS=Morus indica GN=rpl22 PE=3 SV=1

 Score =  146 bits (369), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 68/99 (68%), Positives = 83/99 (83%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + +TN+  EV A A+Y+ MSAHK RRVIDQIRGRSY ETL+ILELMPYRACYPI KL+YS
Sbjct: 4   KRRTNRYTEVYAIAQYISMSAHKARRVIDQIRGRSYAETLIILELMPYRACYPILKLVYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAAN  HNM FNEA+L+I+KAEVNE  + K+ +P+A+GR
Sbjct: 64  AAANANHNMRFNEANLIISKAEVNEGNTVKKLKPRARGR 102

The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome.

Morus indica (taxid: 248361)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
166245006	161	ribosomal protein L22 [Gnetum montanum]	0.537	0.583	0.797	6e-38
428696899	134	ribosomal protein L22 [Erodium cygnorum]	0.565	0.738	0.727	4e-36
290487774	137	ribosomal protein L22 [Dillenia indica]	0.565	0.722	0.727	5e-36
108802680	160	ribosomal protein L22 [Eucalyptus globul	0.56	0.612	0.757	5e-36
428697485	132	ribosomal protein L22 [California macrop	0.565	0.75	0.717	9e-36
290487794	154	ribosomal protein L22 [Berberidopsis cor	0.554	0.629	0.742	1e-35
166244942	131	ribosomal protein L22 [Syzygium jambos]	0.56	0.748	0.757	1e-35
428697566	137	ribosomal protein L22 [Erodium moschatum	0.565	0.722	0.717	1e-35
408900398	113	Rpl22, partial (chloroplast) [Microdesmi	0.52	0.805	0.758	2e-35
309322485	160	ribosomal protein L22 [Eucalyptus grandi	0.56	0.612	0.747	2e-35

>gi|166245006|dbj|BAG06570.1| ribosomal protein L22 [Gnetum montanum]

 Score =  162 bits (409), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 75/94 (79%), Positives = 85/94 (90%)

Query: 81  KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANG 140
           KK EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAAANG
Sbjct: 7   KKVEVYALGQHICMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAAANG 66

Query: 141 VHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           +HN+GFNEASLVI KAEVNE T+AKR +P+A+GR
Sbjct: 67  IHNLGFNEASLVIIKAEVNEGTAAKRLKPRARGR 100

Source: Gnetum montanum

Species: Gnetum montanum

Genus: Gnetum

Family: Gnetaceae

Order: Gnetales

Class: Gnetopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428696899|ref|YP_007025200.1| ribosomal protein L22 [Erodium cygnorum]

 Score =  155 bits (393), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 86/99 (86%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + KT +  EVSA  +Y+ MSA+KVRRVIDQIRGRSYEETLMILELMPYRAC PIFKLIYS
Sbjct: 3   KKKTKRYTEVSAFGQYISMSANKVRRVIDQIRGRSYEETLMILELMPYRACSPIFKLIYS 62

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAANG+HNM F+E SL+I+KAEVNE T+ K+ +P+A+GR
Sbjct: 63  AAANGIHNMNFDEKSLIISKAEVNEGTTVKKLKPRAKGR 101

Source: Erodium cygnorum

Species: Erodium cygnorum

Genus: Erodium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290487774|gb|ADD30271.1| ribosomal protein L22 [Dillenia indica]

 Score =  155 bits (393), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 72/99 (72%), Positives = 84/99 (84%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           ++K N+  EV A   Y+ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS
Sbjct: 4   KSKKNQNTEVYALGHYIRMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAAN  HNMG NEA L+I+KAEVNE+T+ K+ +P+A+GR
Sbjct: 64  AAANASHNMGINEADLIISKAEVNESTTMKKLKPQARGR 102

Source: Dillenia indica

Species: Dillenia indica

Genus: Dillenia

Family: Dilleniaceae

Order: Dilleniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108802680|ref|YP_636338.1| ribosomal protein L22 [Eucalyptus globulus subsp. globulus] gi|109893072|sp|Q49KV9.1|RK22_EUCGG RecName: Full=50S ribosomal protein L22, chloroplastic gi|60460846|gb|AAX21066.1| ribosomal protein L22 [Eucalyptus globulus subsp. globulus]

 Score =  155 bits (392), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 85/99 (85%), Gaps = 1/99 (1%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           RNK N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YS
Sbjct: 5   RNK-NLYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAAN  HNMGFNEASLVI+KAEVNE T+ K+ +P+A+GR
Sbjct: 64  AAANASHNMGFNEASLVISKAEVNEGTTMKKLKPRARGR 102

Source: Eucalyptus globulus subsp. globulus

Species: Eucalyptus globulus

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428697485|ref|YP_007025757.1| ribosomal protein L22 [California macrophylla]

 Score =  154 bits (390), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 85/99 (85%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + KT +  EVSA  +Y+ MS +KVRRVIDQIRGRSYEETLMILELMPYRACYPI KLIYS
Sbjct: 3   KKKTKRYTEVSALGQYISMSPNKVRRVIDQIRGRSYEETLMILELMPYRACYPILKLIYS 62

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAANG+HNM F+E SL+I+KAEVNE T+ K+ +P+A+GR
Sbjct: 63  AAANGIHNMNFDEKSLIISKAEVNEGTTVKKLKPRAKGR 101

Source: California macrophylla

Species: California macrophylla

Genus: California

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|290487794|gb|ADD30281.1| ribosomal protein L22 [Berberidopsis corallina]

 Score =  154 bits (390), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 72/97 (74%), Positives = 82/97 (84%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YSAA
Sbjct: 3   KKNPNTEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYSAA 62

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AN  HNMGFNEA LVI+KAEVNE T+ K+ +P+A+GR
Sbjct: 63  ANASHNMGFNEADLVISKAEVNEGTTVKKLKPRARGR 99

Source: Berberidopsis corallina

Species: Berberidopsis corallina

Genus: Berberidopsis

Family: Berberidopsidaceae

Order: Berberidopsidales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|166244942|dbj|BAG06519.1| ribosomal protein L22 [Syzygium jambos]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 75/99 (75%), Positives = 86/99 (86%), Gaps = 1/99 (1%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           RNK N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YS
Sbjct: 5   RNK-NPYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLLYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAAN  HNMGFNEASLVI+KAEVNE+T+ K+ +P+A+GR
Sbjct: 64  AAANASHNMGFNEASLVISKAEVNESTTMKKLKPRARGR 102

Source: Syzygium jambos

Species: Syzygium jambos

Genus: Syzygium

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|428697566|ref|YP_007025849.1| ribosomal protein L22 [Erodium moschatum]

 Score =  154 bits (388), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 85/99 (85%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           + KT +  EVSA  +Y+ MSA+KVRRVIDQIRGRSYEETLMILELMPYRAC PI KLIYS
Sbjct: 3   KKKTKRYTEVSALGQYISMSANKVRRVIDQIRGRSYEETLMILELMPYRACSPILKLIYS 62

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAANG+HNM F+E SL+I+KAEVNE T+ K+ +P+A+GR
Sbjct: 63  AAANGIHNMNFDEKSLIISKAEVNEGTTVKKLKPRAKGR 101

Source: Erodium moschatum

Species: Erodium moschatum

Genus: Erodium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|408900398|gb|AFU94976.1| Rpl22, partial (chloroplast) [Microdesmis caseariifolia]

 Score =  154 bits (388), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 69/91 (75%), Positives = 82/91 (90%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           EV A  +Y++MSAHK RR+IDQIRGRSYEETLM+LELMPYRACYPIFKL+YSAAAN  HN
Sbjct: 1   EVYALGQYIYMSAHKARRIIDQIRGRSYEETLMMLELMPYRACYPIFKLVYSAAANASHN 60

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           MGF+EASLVI+KAEVNE T+ K+ +P+A+GR
Sbjct: 61  MGFDEASLVISKAEVNEGTTVKKLKPRARGR 91

Source: Microdesmis caseariifolia

Species: Microdesmis caseariifolia

Genus: Microdesmis

Family: Pandaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|309322485|ref|YP_003933999.1| ribosomal protein L22 [Eucalyptus grandis] gi|308223319|gb|ADO23627.1| ribosomal protein L22 [Eucalyptus grandis]

 Score =  153 bits (387), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 74/99 (74%), Positives = 85/99 (85%), Gaps = 1/99 (1%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYS 135
           RNK N   EV A  +++ MSAHK RRVIDQIRGRSYEETLMILELMPYRACYPIFKL+YS
Sbjct: 5   RNK-NLYGEVYALGQHISMSAHKARRVIDQIRGRSYEETLMILELMPYRACYPIFKLVYS 63

Query: 136 AAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAAN  HNMGF+EASLVI+KAEVNE T+ K+ +P+A+GR
Sbjct: 64  AAANASHNMGFDEASLVISKAEVNEGTTMKKLKPRARGR 102

Source: Eucalyptus grandis

Species: Eucalyptus grandis

Genus: Eucalyptus

Family: Myrtaceae

Order: Myrtales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	175
UNIPROTKB|O62952	142	rpl22 "50S ribosomal protein L	0.52	0.640	0.626	8.4e-26
UNIPROTKB|P0C444	149	rpl22 "50S ribosomal protein L	0.651	0.765	0.5	1e-22
UNIPROTKB|P0C445	149	rpl22 "50S ribosomal protein L	0.651	0.765	0.5	1e-22
UNIPROTKB|P0C446	149	rpl22 "50S ribosomal protein L	0.651	0.765	0.5	1e-22
UNIPROTKB|Q6END4	149	rpl22 "50S ribosomal protein L	0.651	0.765	0.5	1e-22
UNIPROTKB|P61181	197	rplV "50S ribosomal protein L2	0.554	0.492	0.443	1.6e-15
TIGR_CMR|CHY_2304	113	CHY_2304 "ribosomal protein L2	0.52	0.805	0.439	3e-14
TIGR_CMR|BA_0115	113	BA_0115 "ribosomal protein L22	0.52	0.805	0.395	9.4e-11
TIGR_CMR|DET_0479	109	DET_0479 "ribosomal protein L2	0.52	0.834	0.384	3.2e-10
TIGR_CMR|SO_0236	110	SO_0236 "ribosomal protein L22	0.52	0.827	0.395	4.1e-10

UNIPROTKB|O62952 rpl22 "50S ribosomal protein L22, chloroplastic" [Picea abies (taxid:3329)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 57/91 (62%), Positives = 72/91 (79%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             E+ A AR + MSAHK R+VI+QIRG SY + LMILELMPY ACYPI +LI+SAAAN  HN
Sbjct:    12 EIRALARNIRMSAHKARKVINQIRGCSYGQALMILELMPYGACYPISQLIHSAAANANHN 71

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
             MG N+A+L++++ EVNE    KR +P+AQGR
Sbjct:    72 MGLNKANLLVSRVEVNEGAVFKRVQPRAQGR 102

GO:0043253 "chloroplast ribosome" evidence=NAS

UNIPROTKB|P0C444 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza sativa (taxid:4530)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 58/116 (50%), Positives = 76/116 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGR 127

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C445 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza sativa Indica Group (taxid:39946)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 58/116 (50%), Positives = 76/116 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGR 127

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P0C446 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 58/116 (50%), Positives = 76/116 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGR 127

GO:0009536 "plastid" evidence=IC

UNIPROTKB|Q6END4 rpl22 "50S ribosomal protein L22, chloroplastic" [Oryza nivara (taxid:4536)]

 Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
 Identities = 58/116 (50%), Positives = 76/116 (65%)

Query:    59 KKIISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMIL 118
             KK  S  +K     P +R    K   V  + + +HMS  KV+RV+D+IR R YEET+MIL
Sbjct:    14 KKKKSGLRKLARKVPTDR--LLKFERVFKAQKRIHMSVFKVQRVLDEIRWRYYEETVMIL 71

Query:   119 ELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
              LMPYRA YPI KL+YSAAAN  H   F++A+L I KAEV+ +T   + RP+A+GR
Sbjct:    72 NLMPYRASYPILKLVYSAAANATHYRDFDKANLFITKAEVSRSTIMNKFRPRARGR 127

GO:0009536 "plastid" evidence=IC

UNIPROTKB|P61181 rplV "50S ribosomal protein L22" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
 Identities = 43/97 (44%), Positives = 59/97 (60%)

Query:    78 KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
             K  +     A AR++ +S  K RRVID +RGRS  + L IL   P  A  P+ K+I SAA
Sbjct:     6 KATEYPSAVAKARFVRVSPRKARRVIDLVRGRSVSDALDILRWAPQAASGPVAKVIASAA 65

Query:   138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
             AN  +N G + A+LV+A    ++  +AKR RP+AQGR
Sbjct:    66 ANAQNNGGLDPATLVVATVYADQGPTAKRIRPRAQGR 102

GO:0005618 "cell wall" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|CHY_2304 CHY_2304 "ribosomal protein L22" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
 Identities = 40/91 (43%), Positives = 57/91 (62%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             E  A A+Y+ +S  K R+VID IRG+  EE L IL   P +A Y I K++ SA AN  +N
Sbjct:     2 EARAVAKYIRISPRKARQVIDLIRGKDVEEALAILRYTPKKASYFIEKVLRSAIANAENN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
                ++ +L +AKA V++  + KR  P+AQGR
Sbjct:    62 HDMSKENLYVAKAYVDQGPTLKRYNPRAQGR 92

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|BA_0115 BA_0115 "ribosomal protein L22" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 36/91 (39%), Positives = 51/91 (56%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             +  A AR + ++  KVR V+D IRG+   E + IL   P  A   + K++ SA AN  HN
Sbjct:     2 QAKAVARTVRIAPRKVRLVVDLIRGKQVGEAIAILNHTPKTASPVVEKVLKSAIANAEHN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
                +  SLV+ K  V+E  + KR RP+A GR
Sbjct:    62 YEMDINSLVVEKVFVDEGPTLKRFRPRAMGR 92

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

TIGR_CMR|DET_0479 DET_0479 "ribosomal protein L22" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 145 (56.1 bits), Expect = 3.2e-10, P = 3.2e-10
 Identities = 35/91 (38%), Positives = 49/91 (53%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             EV A  +    SA KVR  +D +RG+   E + +L  M       + K+I SAAAN  +N
Sbjct:     2 EVKAIVKDTGYSALKVRLCVDMVRGKKVSEAITMLRFMTSPTAKVVSKVIKSAAANAENN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
                N A L I++   +EA   KR RP+A+GR
Sbjct:    62 FQMNPADLKISQIYADEARMLKRMRPQARGR 92

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|SO_0236 SO_0236 "ribosomal protein L22" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 36/91 (39%), Positives = 48/91 (52%)

Query:    84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
             EV A  R+   SA K R V DQIRG    + L IL   P +A   + K++ SA AN  HN
Sbjct:     2 EVLAKHRFARTSAQKARLVADQIRGLPVAKALEILTFSPKKAAVLVKKVLDSAIANAEHN 61

Query:   144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
              G +   L +    V+E  + KR  P+A+GR
Sbjct:    62 EGADIDELKVGAVFVDEGPTMKRIMPRAKGR 92

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A4GYV0	RK22_POPTR	No assigned EC number	0.7692	0.52	0.6893	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	175
CHL00034	117	CHL00034, rpl22, ribosomal protein L22	5e-57
PRK00565	112	PRK00565, rplV, 50S ribosomal protein L22; Reviewe	1e-32
pfam00237	105	pfam00237, Ribosomal_L22, Ribosomal protein L22p/L	6e-32
cd00336	105	cd00336, Ribosomal_L22, Ribosomal protein L22/L17e	8e-30
COG0091	120	COG0091, RplV, Ribosomal protein L22 [Translation,	3e-25
TIGR01044	103	TIGR01044, rplV_bact, ribosomal protein L22, bacte	2e-21
PRK12279	311	PRK12279, PRK12279, 50S ribosomal protein L22/unkn	3e-06

>gnl|CDD|214342 CHL00034, rpl22, ribosomal protein L22

 Score =  174 bits (443), Expect = 5e-57
 Identities = 68/98 (69%), Positives = 77/98 (78%)

Query: 77  NKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSA 136
            K     EV A A+Y+ MSAHK RRVIDQIRGRSYEE LMILE MPYRACYPI KL+YSA
Sbjct: 2   MKKKSTTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSA 61

Query: 137 AANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AAN  HNMG N+A+L I+KAEV+E  + KR RP+AQGR
Sbjct: 62  AANASHNMGLNKANLFISKAEVDEGPTLKRFRPRAQGR 99

Length = 117

>gnl|CDD|234793 PRK00565, rplV, 50S ribosomal protein L22; Reviewed

 Score =  112 bits (282), Expect = 1e-32
 Identities = 39/91 (42%), Positives = 56/91 (61%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  K R V D IRG+  EE L IL+  P +A   + K++ SA AN  +N
Sbjct: 2   EAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
            G +  +LV+ +A V+E  + KR RP+A+GR
Sbjct: 62  HGLDIDNLVVKEAYVDEGPTLKRFRPRARGR 92

Length = 112

>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e

 Score =  110 bits (277), Expect = 6e-32
 Identities = 40/88 (45%), Positives = 55/88 (62%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A ARY+ +S  K R V D IRG+S EE L ILE +P +A   I KL+ SA AN  +N G 
Sbjct: 1   AVARYIRISPKKARLVADLIRGKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGL 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGR 174
           +  +L I +  V++  + KR RP+A+GR
Sbjct: 61  DPDNLYIKEIFVDKGPTLKRFRPRARGR 88

This family includes L22 from prokaryotes and chloroplasts and L17 from eukaryotes. Length = 105

>gnl|CDD|238205 cd00336, Ribosomal_L22, Ribosomal protein L22/L17e

 Score =  104 bits (263), Expect = 8e-30
 Identities = 37/90 (41%), Positives = 49/90 (54%)

Query: 85  VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNM 144
             A  RYL +S  K R V   IRG S +E L  LE +P +A   I KL+ SA AN  +N 
Sbjct: 1   AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNG 60

Query: 145 GFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
             +   L I   +VN+  + KR RP+A+GR
Sbjct: 61  LDDPDKLYIKHIQVNKGPTLKRRRPRARGR 90

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome. Length = 105

>gnl|CDD|223169 COG0091, RplV, Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

 Score = 93.5 bits (233), Expect = 3e-25
 Identities = 38/97 (39%), Positives = 54/97 (55%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAA 137
           K   + E  A ARYL +S  K R V D IRG+   E L ILE +P +A   + K++ SA 
Sbjct: 4   KVEPEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAI 63

Query: 138 ANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           AN  +N G +   LV++   V++    KR  P+A+GR
Sbjct: 64  ANAENNKGLDPDKLVVSHIAVDKGPVLKRFMPRARGR 100

Length = 120

>gnl|CDD|130116 TIGR01044, rplV_bact, ribosomal protein L22, bacterial type

 Score = 83.3 bits (206), Expect = 2e-21
 Identities = 37/88 (42%), Positives = 52/88 (59%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A AR++ +S  K R V D IRG+S  + L IL   P +A   I K++ SA AN  HN G 
Sbjct: 1   AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGL 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGR 174
           +  +LV+    V+E  + KR RP+A+GR
Sbjct: 61  DADNLVVVTIFVDEGPTLKRIRPRAKGR 88

This model decribes bacterial and chloroplast ribosomal protein L22 [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 103

>gnl|CDD|138835 PRK12279, PRK12279, 50S ribosomal protein L22/unknown domain fusion protein; Provisional

 Score = 45.8 bits (108), Expect = 3e-06
 Identities = 29/85 (34%), Positives = 43/85 (50%), Gaps = 1/85 (1%)

Query: 90  RYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEA 149
           R +H+S  K   VID +R +   E + IL   P +    + KL+ SA +N  HN    + 
Sbjct: 8   RNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMDP 67

Query: 150 S-LVIAKAEVNEATSAKRPRPKAQG 173
           S L I K   N+  + KR  P+A+G
Sbjct: 68  SKLYIYKIVANQGPTMKRTLPRAKG 92

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	175
CHL00034	117	rpl22 ribosomal protein L22	100.0
PRK00565	112	rplV 50S ribosomal protein L22; Reviewed	100.0
TIGR01044	103	rplV_bact ribosomal protein L22, bacterial type. T	100.0
COG0091	120	RplV Ribosomal protein L22 [Translation, ribosomal	100.0
cd00336	105	Ribosomal_L22 Ribosomal protein L22/L17e. L22 (L17	99.97
PF00237	105	Ribosomal_L22: Ribosomal protein L22p/L17e; InterP	99.97
TIGR01038	150	L22_arch ribosomal protein L22(archaeal)/L17(eukar	99.97
PRK04223	153	rpl22p 50S ribosomal protein L22P; Reviewed	99.97
PRK12279	311	50S ribosomal protein L22/unknown domain fusion pr	99.96
PTZ00178	181	60S ribosomal protein L17; Provisional	99.96
KOG1711	218	consensus Mitochondrial/chloroplast ribosomal prot	99.89
KOG3353	175	consensus 60S ribosomal protein L22 [Translation,	99.37

>CHL00034 rpl22 ribosomal protein L22

Probab=100.00  E-value=5.2e-35  Score=225.62  Aligned_cols=95  Identities=71%  Similarity=1.088  Sum_probs=92.9

Q ss_pred             CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcC
Q 030580           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNE  160 (175)
Q Consensus        81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~k  160 (175)
                      .+++++|..+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||.|+|||+
T Consensus         6 ~~~~~~A~~~~ir~SpkK~r~va~~IRG~~v~~A~~~L~~~pkk~a~~i~klL~sA~aNA~~~~gld~d~L~I~~i~v~~   85 (117)
T CHL00034          6 STTEVYALAKYIRMSAHKARRVIDQIRGRSYEEALMILEFMPYRACYPILKLVYSAAANASHNMGLNKANLFISKAEVDE   85 (117)
T ss_pred             CCceEEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHHCcHHHHHHHHHHHHHHHHHHHHccCCCccceEEEEEEECC
Confidence            45899999999999999999999999999999999999999999999999999999999998999999999999999999


Q ss_pred             CCCCCCCccCCCCCC
Q 030580          161 ATSAKRPRPKAQGRE  175 (175)
Q Consensus       161 Gp~lKR~~pRArGRA  175 (175)
                      ||++||++||||||+
T Consensus        86 G~~~KR~~prArGRa  100 (117)
T CHL00034         86 GPTLKRFRPRAQGRS  100 (117)
T ss_pred             CCccCCCCcccCCCC
Confidence            999999999999996

>PRK00565 rplV 50S ribosomal protein L22; Reviewed

Probab=100.00  E-value=9.6e-35  Score=221.93  Aligned_cols=93  Identities=42%  Similarity=0.595  Sum_probs=91.2

Q ss_pred             ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (175)
Q Consensus        83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp  162 (175)
                      |+++|.++++++||+|+++|+++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||.++|||+||
T Consensus         1 ~~~~A~~~~~~~SpkK~~~v~~~IrG~~v~~A~~~L~~~pkk~a~~i~k~L~sA~aNA~~~~g~d~~~L~I~~~~v~~G~   80 (112)
T PRK00565          1 MEAKAKARYVRVSPRKARLVADLIRGKKVEEALAILKFSPKKAARLVKKVLKSAIANAENNHGLDIDNLVVKEAYVDEGP   80 (112)
T ss_pred             CceEEEeCccccCHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHHHHhccCCChhHeEEEEEEECCCC
Confidence            57899999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             CCCCCccCCCCCC
Q 030580          163 SAKRPRPKAQGRE  175 (175)
Q Consensus       163 ~lKR~~pRArGRA  175 (175)
                      ++||++||||||+
T Consensus        81 ~~Kr~~~rArGR~   93 (112)
T PRK00565         81 TLKRFRPRARGRA   93 (112)
T ss_pred             ccCCCCCCcCCCC
Confidence            9999999999996

>TIGR01044 rplV_bact ribosomal protein L22, bacterial type

Probab=100.00  E-value=8.1e-35  Score=219.63  Aligned_cols=89  Identities=42%  Similarity=0.599  Sum_probs=87.0

Q ss_pred             EEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCC
Q 030580           87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKR  166 (175)
Q Consensus        87 A~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR  166 (175)
                      |..+++++||+|+++|+++||||+|+||+.||+|+|+|+|+.|+|+|+||.+||++++|+|+|+|||+|+|||+||++||
T Consensus         1 a~~r~~r~SpkK~~~va~~IrG~~v~~A~~~L~f~pkk~a~~i~klL~sA~aNA~~~~~ld~~~L~I~~~~v~~G~~~kr   80 (103)
T TIGR01044         1 AKARFVRISPRKARLVADLIRGKSVSQALDILRFTPKKAAPLIKKVLASAIANAEHNYGLDADNLVVVTIFVDEGPTLKR   80 (103)
T ss_pred             CcccccccCHHHHHHHHHHHcCCcHHHHHHHHhhCCHhHHHHHHHHHHHHHHHHHHccCCChHheEEEEEEECCCCcccC
Confidence            56899999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             CccCCCCCC
Q 030580          167 PRPKAQGRE  175 (175)
Q Consensus       167 ~~pRArGRA  175 (175)
                      ++|||||||
T Consensus        81 ~~~rarGRa   89 (103)
T TIGR01044        81 IRPRAKGRA   89 (103)
T ss_pred             CCCCCCCCC
Confidence            999999997

This model decribes bacterial and chloroplast ribosomal protein L22.

>COG0091 RplV Ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.7e-35  Score=228.75  Aligned_cols=95  Identities=39%  Similarity=0.565  Sum_probs=92.9

Q ss_pred             CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcC
Q 030580           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNE  160 (175)
Q Consensus        81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~k  160 (175)
                      ..++++|..+++++||+|+++||++||||++++|+.+|+|+|+|+|+.|+|+|+||++||++|+|||+|+|||.|||||+
T Consensus         7 ~~~~akA~~r~~riSpkk~r~Va~~IrG~~v~~A~~~L~~~pkKaa~~v~KvL~sA~aNAe~n~gLd~d~L~V~~i~v~~   86 (120)
T COG0091           7 PEMEAKAKARYLRISPKKARLVADLIRGKKVAEALAILEFVPKKAAKLVKKVLESAIANAENNKGLDPDKLVVSHIAVDK   86 (120)
T ss_pred             hhhhhHhhhccCcCChHHHHHHHHHHcCCcHHHHHHHHHhChHHHHHHHHHHHHHHHhhHHhccCCChHHEEEEEEEeCC
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccCCCCCC
Q 030580          161 ATSAKRPRPKAQGRE  175 (175)
Q Consensus       161 Gp~lKR~~pRArGRA  175 (175)
                      ||++||++|||||||
T Consensus        87 gp~lKR~~pRA~GRa  101 (120)
T COG0091          87 GPVLKRFMPRARGRA  101 (120)
T ss_pred             CceeeeecccccCcc
Confidence            999999999999997

>cd00336 Ribosomal_L22 Ribosomal protein L22/L17e

Probab=99.97  E-value=8.1e-32  Score=201.93  Aligned_cols=91  Identities=41%  Similarity=0.532  Sum_probs=88.4

Q ss_pred             EEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCC
Q 030580           85 VSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSA  164 (175)
Q Consensus        85 ~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~l  164 (175)
                      ++|..+++++||+|+++++++||||+++||+.||+|+++|+|+.|+++|+||.+||++++++|+|+|||.++|||+||++
T Consensus         1 ~~a~~~~i~~S~kK~~~v~~~Irg~~v~~A~~~L~~~~kk~a~~i~k~l~sa~~nA~~~~~~~~~~L~I~~~~v~~g~~~   80 (105)
T cd00336           1 AKAKGRYLRISPKKARLVARLIRGMSVDEALAQLEFVPKKAAKIILKLLKSAEANAENNGLDDPDKLYIKHIQVNKGPTL   80 (105)
T ss_pred             CEEEEccCccCHHHHHHHHHHHcCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHhHHHcCCCCccceEEEEEEECCCCcc
Confidence            37899999999999999999999999999999999999999999999999999999988888899999999999999999


Q ss_pred             CCCccCCCCCC
Q 030580          165 KRPRPKAQGRE  175 (175)
Q Consensus       165 KR~~pRArGRA  175 (175)
                      ||++||||||+
T Consensus        81 kr~~~rarGR~   91 (105)
T cd00336          81 KRRRPRARGRA   91 (105)
T ss_pred             cCCCcCCCCCC
Confidence            99999999996

L22 (L17 in eukaryotes) is a core protein of the large ribosomal subunit. It is the only ribosomal protein that interacts with all six domains of 23S rRNA, and is one of the proteins important for directing the proper folding and stabilizing the conformation of 23S rRNA. L22 is the largest protein contributor to the surface of the polypeptide exit channel, the tunnel through which the polypeptide product passes. L22 is also one of six proteins located at the putative translocon binding site on the exterior surface of the ribosome.

>PF00237 Ribosomal_L22: Ribosomal protein L22p/L17e; InterPro: IPR001063 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=5.8e-32  Score=202.98  Aligned_cols=89  Identities=38%  Similarity=0.535  Sum_probs=86.0

Q ss_pred             EEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCC
Q 030580           87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKR  166 (175)
Q Consensus        87 A~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR  166 (175)
                      |..+++++||||+++++++|+||+++||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||.++|||+||++||
T Consensus         1 A~~~~i~~S~kk~~~v~~~Irg~~v~~A~~~L~~~~~k~a~~i~k~L~~a~~nA~~~~g~d~~~L~I~~~~v~~g~~~kr   80 (105)
T PF00237_consen    1 AKLRNIRISPKKLREVARLIRGMSVDEAIAQLKFVPKKAAKFILKLLKSAIANAENNKGLDPDNLYISEIWVNKGPYLKR   80 (105)
T ss_dssp             EEEEEESS-HHHHHHHHHHHTTSBHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHCTSTCGGEEEEEEEEEEEEEEEE
T ss_pred             CccccccCCHHHHHHHHHHHcCCCHHHHHHHHHhCcHHHHHHHHhhHHHHHhhcccccccccCceEEEEEEEEecccccC
Confidence            67899999999999999999999999999999999999999999999999999998899999999999999999999999


Q ss_pred             CccCCCCCC
Q 030580          167 PRPKAQGRE  175 (175)
Q Consensus       167 ~~pRArGRA  175 (175)
                      ++||||||+
T Consensus        81 ~~~rArGR~   89 (105)
T PF00237_consen   81 IRPRARGRA   89 (105)
T ss_dssp             EEEECTTEE
T ss_pred             CCcCcCCCc
Confidence            999999985

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein L22 is one of the proteins from the large ribosomal subunit. In Escherichia coli, L22 is known to bind 23S rRNA. It belongs to a family of ribosomal proteins which includes: bacterial L22; algal and plant chloroplast L22 (in legumes L22 is encoded in the nucleus instead of the chloroplast); cyanelle L22; archaebacterial L22; mammalian L17; plant L17 and yeast YL17.; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 3CD6_R 1Q7Y_S 1VQ6_R 1YI2_R 1QVF_Q 3CCR_R 3CCU_R 3CCL_R 1YJ9_R 3CCQ_R ....

>TIGR01038 L22_arch ribosomal protein L22(archaeal)/L17(eukaryotic/archaeal)

Probab=99.97  E-value=2.9e-30  Score=207.09  Aligned_cols=94  Identities=29%  Similarity=0.375  Sum_probs=91.0

Q ss_pred             CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------CCccchhH
Q 030580           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYP  128 (175)
Q Consensus        81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f--------------------------------spKKaAk~  128 (175)
                      ..++++|..+++++||+|+++||++||||++++|+.+|+|                                ||+|+|+.
T Consensus         8 ~~~~akA~~~~~riS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~~~gR~P~Kaa~~   87 (150)
T TIGR01038         8 PTKSAKARGRNLRVSFKNARETARAIRGMELDKARKYLEDVIEMKRAVPFRRYNGKVGHRRGLKEWGWTAGRYPVKAAKF   87 (150)
T ss_pred             CCeeEEEEeCCCcccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccCCCchHHHHH
Confidence            3468999999999999999999999999999999999999                                99999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          129 IFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       129 I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      |+|+|+||.+||++ +|+|+|+|||.+|+||+||++||++|||+|||
T Consensus        88 i~klL~sA~aNA~~-~gld~d~L~I~~i~vnkg~~~kR~~prA~GRa  133 (150)
T TIGR01038        88 ILKVLQNAEANAEY-KGLDVEKLVIIHIQANKGPKIRRWMPRAFGRA  133 (150)
T ss_pred             HHHHHHHHHHHHHh-cCCChhHeEEEEEEECCCCccCCCCCccCCCC
Confidence            99999999999986 79999999999999999999999999999997

This model describes the ribosomal protein of the eukaryotic cytosol and of the Archaea, variously designated as L17, L22, and L23. The corresponding bacterial homolog, described by a separate model, is designated L22.

>PRK04223 rpl22p 50S ribosomal protein L22P; Reviewed

Probab=99.97  E-value=4.5e-30  Score=206.55  Aligned_cols=94  Identities=28%  Similarity=0.361  Sum_probs=91.5

Q ss_pred             CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh------------------------------CCccchhHHH
Q 030580           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL------------------------------MPYRACYPIF  130 (175)
Q Consensus        81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f------------------------------spKKaAk~I~  130 (175)
                      .+++++|.++++++||+|+++||++||||++++|+.+|+|                              ||+|+|+.|+
T Consensus        12 ~~~~akA~~~~~rvS~kk~r~va~~IRG~~v~~A~~~L~~V~~~k~~vPf~r~~~~~g~~~~~~~~~~gr~PkKaa~~i~   91 (153)
T PRK04223         12 PEKTAKAMGRELPISPKHSVEIAREIRGMKLDEAKAYLEDVIALKRAVPFKRHNKKVGHRKGIDGWPAGRYPVKAAKAFL   91 (153)
T ss_pred             CCceEEEEeCCCccChHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccCCCchHHHHHHH
Confidence            5579999999999999999999999999999999999999                              9999999999


Q ss_pred             HHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          131 KLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       131 KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      |+|+||++||++ +|+|+|+|||.+|+||+||++||++|||+|||
T Consensus        92 KlL~sA~aNA~~-~gld~d~L~I~~i~v~kg~~~kR~~prA~GRa  135 (153)
T PRK04223         92 KLLENAEANAEY-KGLDTEKLVIVHIAAHKGRVIKGYMPRAFGRA  135 (153)
T ss_pred             HHHHHHHHHHHh-cCCChhHeEEEEEEECCCCCCCCcCcccCCCC
Confidence            999999999986 79999999999999999999999999999997

>PRK12279 50S ribosomal protein L22/unknown domain fusion protein; Provisional

Probab=99.96  E-value=3.1e-30  Score=226.70  Aligned_cols=93  Identities=28%  Similarity=0.381  Sum_probs=91.0

Q ss_pred             ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhh-hcCCCCCCCeEEEEEEEcCC
Q 030580           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGV-HNMGFNEASLVIAKAEVNEA  161 (175)
Q Consensus        83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe-~~~glD~d~L~I~ea~V~kG  161 (175)
                      |+++|+++++++||+|+|+||++||||++++|+.+|+|+|+|+|..|+++|+||.+||+ +|+|+|.|+|||.+|+||+|
T Consensus         1 M~akA~~r~iriSpkK~R~Va~~IRGk~v~~Al~~L~~~PkKaA~~I~KlLkSA~ANAe~~n~gld~d~L~I~~~~VdkG   80 (311)
T PRK12279          1 MTNKVIQRNIHISHRKASLVIDLVRNKPVHEAIRILSNTPKKFAPIVLKLLNSAISNVQHNSKDMDPSKLYIYKIVANQG   80 (311)
T ss_pred             CceEEEeCCcccCHHHHHHHHHHHcCCcHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhcCCChhHeEEEEEEECCC
Confidence            67999999999999999999999999999999999999999999999999999999999 57999999999999999999


Q ss_pred             CCCCCCccCCCCCC
Q 030580          162 TSAKRPRPKAQGRE  175 (175)
Q Consensus       162 p~lKR~~pRArGRA  175 (175)
                      |++||++|||||||
T Consensus        81 p~lKR~~PRArGRA   94 (311)
T PRK12279         81 PTMKRTLPRAKGSA   94 (311)
T ss_pred             CcccCCCCccCCCC
Confidence            99999999999997

>PTZ00178 60S ribosomal protein L17; Provisional

Probab=99.96  E-value=1.5e-29  Score=208.36  Aligned_cols=94  Identities=23%  Similarity=0.303  Sum_probs=91.3

Q ss_pred             CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------CCccchhH
Q 030580           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYP  128 (175)
Q Consensus        81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f--------------------------------spKKaAk~  128 (175)
                      .+++++|..+++++||+|+++||++||||++++|+++|+|                                +|+|+|+.
T Consensus        11 ~~~~akA~~~~~riSpkk~r~Va~~IRGk~v~~A~~~L~~Vi~~k~~VPf~r~~~~vgh~~~~~~~~~~~GR~P~KaA~~   90 (181)
T PTZ00178         11 PSKSAKAKGSDLRVHFKNTYETARAIKGMKLARAQKYLEDVLAKKRCVPFRRFNGGVGRTAQAKEFGHTQGRWPEKSVKF   90 (181)
T ss_pred             CCceEEEEeCCcccchHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeecCCccccccccccccccCcCcHHHHHH
Confidence            5579999999999999999999999999999999999997                                89999999


Q ss_pred             HHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          129 IFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       129 I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      |+|+|+||.+||+ ++|+|+|+|||.+|.||+||++||++|||+|||
T Consensus        91 i~KlL~SA~aNAe-~~gld~d~L~I~~i~v~kG~~lKR~~pRA~GRA  136 (181)
T PTZ00178         91 VLSLLKNAEANAE-AKGLDVEKLVISHVQVNRAPRGRRRTYRAHGRI  136 (181)
T ss_pred             HHHHHHHHHHHHH-hcCCChhHeEEEEEEECCCcccCCCCCccCCCc
Confidence            9999999999999 589999999999999999999999999999997

>KOG1711 consensus Mitochondrial/chloroplast ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=6.4e-24  Score=178.49  Aligned_cols=108  Identities=35%  Similarity=0.479  Sum_probs=97.9

Q ss_pred             HhcCCCCCCCCCCCCCCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCC
Q 030580           66 QKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMG  145 (175)
Q Consensus        66 ~~~g~~~~~~~~k~~~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~g  145 (175)
                      +++-..||.-.-++.. .++.|....++.|++|++.+|+||+||+|+|||.||+|++||+|+.|.++|.+|.+||.+++|
T Consensus        54 ~~Ki~~~~~l~~~p~~-~eVya~~~~Ik~S~kK~~~l~~lirgm~v~~AL~Ql~~s~kK~a~~i~~~l~~A~~nA~~~~g  132 (218)
T KOG1711|consen   54 RNKIVYPPQLPFEPKR-PEVYACSKSIKSSPKKVWLLARLIRGMSVEEALMQLEFSDKKAAKTIAEVLLSARANAVHNHG  132 (218)
T ss_pred             hccccCcccCCCCCcc-hhHHHHHHHHHhCHHHHHHHHHHHcCCCHHHHHHHhhcchHHHHHHHHHHHHHHHhhhHHhcC
Confidence            3344445555544433 789999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCeEE-EEEEEcCCCCCCCCccCCCCC
Q 030580          146 FNEASLVI-AKAEVNEATSAKRPRPKAQGR  174 (175)
Q Consensus       146 lD~d~L~I-~ea~V~kGp~lKR~~pRArGR  174 (175)
                      +|+++||| .++++++|-++||+.++||||
T Consensus       133 l~~~~l~v~~~~t~~~g~~~Krl~~hargr  162 (218)
T KOG1711|consen  133 LDPDSLLVVAEATVGQGNELKRLKVHARGR  162 (218)
T ss_pred             CCccceEEEEeeecccchhhhheeeeccCc
Confidence            99999988 999999999999999999997

>KOG3353 consensus 60S ribosomal protein L22 [Translation, ribosomal structure and biogenesis]

Probab=99.37  E-value=4e-14  Score=116.44  Aligned_cols=90  Identities=22%  Similarity=0.313  Sum_probs=86.0

Q ss_pred             eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------CCccchhHHHH
Q 030580           84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYPIFK  131 (175)
Q Consensus        84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f--------------------------------spKKaAk~I~K  131 (175)
                      .+++.+.++++|++++++.+..|+++++..|+.+|..                                ||+|+|.+++.
T Consensus         8 ~~karg~~lrv~fKn~r~~~~~i~~~~~~~a~~~l~~v~~~~~c~p~~~~~~g~g~~~q~k~~~~~~~rwpkksaefll~   87 (175)
T KOG3353|consen    8 SCKARGSNLRVHFKNTRETAQTIKCMELLKATVYLKDVILQKICVPFRRYNGGVGRTAQAKQWGWTQGRWPKKSAEFLLH   87 (175)
T ss_pred             hhhcccccEEEEeccCcccchhhcCcccccceeeeccchhhcccccceecCCCcCccchhhhhccccCcccchHHHHHHH
Confidence            5688999999999999999999999999999999982                                89999999999


Q ss_pred             HHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCC
Q 030580          132 LIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR  174 (175)
Q Consensus       132 lL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGR  174 (175)
                      +|++|.+||+. +|+|+|.|+|.++.|+++|.+.|.+|||+||
T Consensus        88 ~LkN~esnaEl-kgldVDsLvIehiqvnkApKm~~rtyraHg~  129 (175)
T KOG3353|consen   88 MLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRRTYRAHGR  129 (175)
T ss_pred             HHHhhhhcccc-cCcCcceeEeeehhhcccchhhhHHHHhhcc
Confidence            99999999998 6899999999999999999999999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	175
3bbo_U	199	Homology Model For The Spinach Chloroplast 50s Subu		9e-31
1giy_S	113	Crystal Structure Of The Ribosome At 5.5 A Resoluti		2e-12
3mrz_S	112	Recognition Of The Amber Stop Codon By Release Fact		3e-12
1jzx_L	134	Structural Basis For The Interaction Of Antibiotics		3e-12
1bxe_A	113	Ribosomal Protein L22 From Thermus Thermophilus Len		4e-12
1pnu_Q	130	Crystal Structure Of A Streptomycin Dependent Ribos		4e-12
1i4j_A	110	Crystal Structure Of L22 Ribosomal Protein Mutant L		1e-09
3sgf_W	116	Crystal Structure Of Release Factor Rf3 Trapped In		3e-09
1p85_Q	110	Real Space Refined Coordinates Of The 50s Subunit F		3e-09
2gya_Q	106	Structure Of The 50s Subunit Of A Pre-Translocation		5e-09

>pdb|3BBO|U Chain U, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 199

Iteration: 1
 Score =  129 bits (324), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 61/95 (64%), Positives = 74/95 (77%)
Query: 80  NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAAN 139
            K  E++     + MS  K RRVIDQIRGRSY ETLMILELMPYRACYPIFKLIYSAAAN
Sbjct: 27  GKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAAN 86
Query: 140 GVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
             HN  FN+A+L+I+KAEVN+  + K+ +P+A+GR
Sbjct: 87  ASHNKQFNKANLIISKAEVNKGITLKKVKPRARGR 121

>pdb|1GIY|S Chain S, Crystal Structure Of The Ribosome At 5.5 A Resolution. This File, 1giy, Contains The 50s Ribosome Subunit. The 30s Ribosome Subunit, Three Trna, And Mrna Molecules Are In The File 1gix Length = 113

Iteration: 1
 Score = 68.2 bits (165), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
               E  L +  A V+E  + KR  P+A+GR
Sbjct: 62  HDMLEDRLYVKAAYVDEGPALKRVLPRARGR 92

>pdb|3MRZ|S Chain S, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 112

Iteration: 1
 Score = 67.8 bits (164), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
               E  L +  A V+E  + KR  P+A+GR
Sbjct: 62  HDMLEDRLYVKAAYVDEGPALKRVLPRARGR 92

>pdb|1JZX|L Chain L, Structural Basis For The Interaction Of Antibiotics With The Peptidyl Transferase Center In Eubacteria Length = 134

Iteration: 1
 Score = 67.4 bits (163), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 76  RNKTNKKAEVS------ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPI 129
           RNK  +K +V       A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+
Sbjct: 9   RNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPV 68
Query: 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQG 173
            K++ SA AN +HN    E  L + +A V+   + KR  P+A+G
Sbjct: 69  AKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARG 112

>pdb|1BXE|A Chain A, Ribosomal Protein L22 From Thermus Thermophilus Length = 113

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 40/91 (43%), Positives = 53/91 (58%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
               E  L +  A V+E  + KR  P+A+GR
Sbjct: 62  HDXLEDRLYVKAAYVDEGPALKRVLPRARGR 92

>pdb|1PNU|Q Chain Q, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 130

Iteration: 1
 Score = 67.4 bits (163), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 39/104 (37%), Positives = 59/104 (56%), Gaps = 6/104 (5%)
Query: 76  RNKTNKKAEVS------ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPI 129
           RNK  +K +V       A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+
Sbjct: 5   RNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPV 64
Query: 130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQG 173
            K++ SA AN +HN    E  L + +A V+   + KR  P+A+G
Sbjct: 65  AKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARG 108

>pdb|1I4J|A Chain A, Crystal Structure Of L22 Ribosomal Protein Mutant Length = 110

Iteration: 1
 Score = 58.9 bits (141), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
               E  L +  A V+E  +     P+A+GR
Sbjct: 62  HDALEDRLYVKAAYVDEGPAVL---PRARGR 89

>pdb|3SGF|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp State On A Rotated Conformation Of The Ribosome Length = 116

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN
Sbjct: 2   ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
            G +   L + K  V+E  S KR  P+A+GR
Sbjct: 62  DGADIDDLKVTKIFVDEGPSMKRIMPRAKGR 92

>pdb|1P85|Q Chain Q, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 110

Iteration: 1
 Score = 58.2 bits (139), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 36/91 (39%), Positives = 48/91 (52%)
Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN
Sbjct: 2   ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61
Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
            G +   L + K  V+E  S KR  P+A+GR
Sbjct: 62  DGADIDDLKVTKIFVDEGPSMKRIMPRAKGR 92

>pdb|2GYA|Q Chain Q, Structure Of The 50s Subunit Of A Pre-Translocational E. Coli Ribosome Obtained By Fitting Atomic Models For Rna And Protein Components Into Cryo-Em Map Emd-1056 Length = 106

Iteration: 1
 Score = 57.4 bits (137), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/88 (39%), Positives = 47/88 (53%)
Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G 
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60
Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGR 174
           +   L + K  V+E  S KR  P+A+GR
Sbjct: 61  DIDDLKVTKIFVDEGPSMKRIMPRAKGR 88

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	175
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	2e-43
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	8e-43
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	3e-36
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	4e-34
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	7e-27
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	3e-15
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	4e-13
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	4e-13
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	1e-10
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	2e-10

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 199

 Score =  141 bits (358), Expect = 2e-43
 Identities = 61/100 (61%), Positives = 76/100 (76%)

Query: 75  NRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIY 134
           +  +  K  E++     + MS  K RRVIDQIRGRSY ETLMILELMPYRACYPIFKLIY
Sbjct: 22  HHPEPGKCDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIY 81

Query: 135 SAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           SAAAN  HN  FN+A+L+I+KAEVN+  + K+ +P+A+GR
Sbjct: 82  SAAANASHNKQFNKANLIISKAEVNKGITLKKVKPRARGR 121

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ... Length = 134

 Score =  138 bits (350), Expect = 8e-43
 Identities = 34/113 (30%), Positives = 61/113 (53%)

Query: 62  ISSAQKRGISPPNNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM 121
           +++ ++   +    + +   +    A A+Y+ MS  KVR V+D IRG+S ++   +L  +
Sbjct: 1   MTAPEQTFRNKKQRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFI 60

Query: 122 PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
           P  A  P+ K++ SA AN +HN    E  L + +A V+   + KR  P+A+G 
Sbjct: 61  PRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGS 113

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ... Length = 110

 Score =  120 bits (304), Expect = 3e-36
 Identities = 38/91 (41%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
               E  L +  A V+E        P+A+GR
Sbjct: 62  HDALEDRLYVKAAYVDE---GPAVLPRARGR 89

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ... Length = 110

 Score =  115 bits (291), Expect = 4e-34
 Identities = 36/91 (39%), Positives = 48/91 (52%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN
Sbjct: 2   ETIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
            G +   L + K  V+E  S KR  P+A+GR
Sbjct: 62  DGADIDDLKVTKIFVDEGPSMKRIMPRAKGR 92

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M Length = 110

 Score = 96.8 bits (242), Expect = 7e-27
 Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%)

Query: 89  ARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNE 148
            R +  S  K+  +   IRG S ++ L  LE    +    I +++  A    V +     
Sbjct: 3   RRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEF 62

Query: 149 AS-LVIAKAEVNEATSAKRPRPKAQGR 174
            S L IA++        KR R   +GR
Sbjct: 63  RSNLYIAESTSGRGQCLKRIRYHGRGR 89

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ... Length = 155

 Score = 68.3 bits (167), Expect = 3e-15
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 31/127 (24%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
           + +      A  R   MS    + +  +I+G++  E +  LE                  
Sbjct: 8   EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 67

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P +A      L+ +A  N   + GF+  ++ I     ++    +  
Sbjct: 68  GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 126

Query: 168 RPKAQGR 174
           +P+A GR
Sbjct: 127 KPRAMGR 133

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q Length = 183

 Score = 63.1 bits (153), Expect = 4e-13
 Identities = 28/131 (21%), Positives = 44/131 (33%), Gaps = 33/131 (25%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
           R   N+   V  SA  L +       V+  I+G + E     L+ +              
Sbjct: 8   REPANQAKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTG 67

Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
                             P ++   I  L+ + +AN       N A+LVI   +VN A  
Sbjct: 68  CIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQA-KSLNTANLVIQHGQVNRAQK 126

Query: 164 AKRPRPKAQGR 174
            +R   +A GR
Sbjct: 127 GRRRTYRAHGR 137

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} Length = 184

 Score = 56.5 bits (136), Expect = 1e-10
 Identities = 21/127 (16%), Positives = 38/127 (29%), Gaps = 33/127 (25%)

Query: 80  NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE-------------------- 119
           N      +    L +     R     I+G    +    L+                    
Sbjct: 10  NPTKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGR 69

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P ++   +  ++ +A +N     G +  SLVI   +VN+A   +R 
Sbjct: 70  CAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAEL-KGLDVDSLVIEHIQVNKAPKMRRR 128

Query: 168 RPKAQGR 174
             +A GR
Sbjct: 129 TYRAHGR 135

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 1s1i_N 3izc_V 3izs_V 3jyw_N Length = 184

 Score = 56.1 bits (135), Expect = 2e-10
 Identities = 27/131 (20%), Positives = 42/131 (32%), Gaps = 33/131 (25%)

Query: 76  RNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELM-------------- 121
              TN     SA   YL +S    R     I G    +    LE +              
Sbjct: 6   ATSTNPAKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNS 65

Query: 122 ------------------PYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATS 163
                             P ++   +  L+ +AAAN     G +   L ++  +VN+A  
Sbjct: 66  SIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAE-AKGLDATKLYVSHIQVNQAPK 124

Query: 164 AKRPRPKAQGR 174
            +R   +A GR
Sbjct: 125 QRRRTYRAHGR 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	175
3r8s_S	110	50S ribosomal protein L22; protein biosynthesis, R	100.0
2zjr_P	134	50S ribosomal protein L22; ribosome, large ribosom	100.0
2ftc_M	110	Mitochondrial ribosomal protein L22 isoform A; mit	100.0
1i4j_A	110	50S ribosomal protein L22; mutant, erythromycin re	100.0
1vq8_R	155	50S ribosomal protein L22P; ribosome 50S, protein-	99.97
3bbo_U	199	Ribosomal protein L22; large ribosomal subunit, sp	99.97
3j21_S	155	50S ribosomal protein L22P; archaea, archaeal, KIN	99.97
2zkr_r	184	60S ribosomal protein L17; protein-RNA complex, 60	99.97
3iz5_V	171	60S ribosomal protein L17 (L22P); eukaryotic ribos	99.97
4a17_Q	183	RPL17, 60S ribosomal protein L21; eukaryotic ribos	99.96
3u5e_P	184	L20A, YL17, 60S ribosomal protein L17-A; translati	99.96

>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...

Probab=100.00  E-value=3.4e-37  Score=234.00  Aligned_cols=93  Identities=39%  Similarity=0.432  Sum_probs=91.6

Q ss_pred             ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (175)
Q Consensus        83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp  162 (175)
                      ||++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||.+||++++|+|+|+|||++||||+||
T Consensus         1 me~kA~~~~ir~S~kK~r~va~~IrG~~v~~Al~~L~f~pkkaa~~v~k~L~sA~aNAe~~~gld~d~L~I~~~~v~~g~   80 (110)
T 3r8s_S            1 METIAKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGP   80 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHSSCCTTSCEEEEEEEEEEE
T ss_pred             CeEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHhhCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEeCCCC
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCccCCCCCC
Q 030580          163 SAKRPRPKAQGRE  175 (175)
Q Consensus       163 ~lKR~~pRArGRA  175 (175)
                      ++||++||||||+
T Consensus        81 ~~KR~~pRA~GR~   93 (110)
T 3r8s_S           81 SMKRIMPRAKGRA   93 (110)
T ss_dssp             EEEEEEECGGGCE
T ss_pred             ccCCCCcCCCCCC
Confidence            9999999999996

>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...

Probab=100.00  E-value=5.2e-36  Score=235.03  Aligned_cols=94  Identities=36%  Similarity=0.523  Sum_probs=91.8

Q ss_pred             CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCC
Q 030580           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEA  161 (175)
Q Consensus        82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kG  161 (175)
                      .|+++|.++++++||+|+++||++||||+|+||+.||+|||+|+|..|+++|+||++||++|+|+|+|+|||.+||||+|
T Consensus        21 ~~~akA~~~~irvSpkK~r~Va~~IRG~~v~eAl~~L~f~pkKaA~~v~klL~sA~aNAe~n~gld~d~L~I~~i~V~~G  100 (134)
T 2zjr_P           21 RKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAG  100 (134)
T ss_dssp             CCTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEEC
T ss_pred             ceEEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHCcHhHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCC
Confidence            46789999999999999999999999999999999999999999999999999999999988999999999999999999


Q ss_pred             CCCCCCccCCCCCC
Q 030580          162 TSAKRPRPKAQGRE  175 (175)
Q Consensus       162 p~lKR~~pRArGRA  175 (175)
                      |++||++||||||+
T Consensus       101 p~lKR~~pRA~GRa  114 (134)
T 2zjr_P          101 PTLKRLIPRARGSA  114 (134)
T ss_dssp             CCEEEEEECSTTCE
T ss_pred             ccccCCCCCCCCCC
Confidence            99999999999996

>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M

Probab=100.00  E-value=3.2e-35  Score=223.16  Aligned_cols=88  Identities=24%  Similarity=0.295  Sum_probs=86.1

Q ss_pred             EeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCC-CCCeEEEEEEEcCCCCCCC
Q 030580           88 SARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFN-EASLVIAKAEVNEATSAKR  166 (175)
Q Consensus        88 ~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD-~d~L~I~ea~V~kGp~lKR  166 (175)
                      +.+++++||+|+++||++||||+|+||+.||+|+|+|+|+.|+++|+||++||++|+|+| +|+|||++||||+||++||
T Consensus         2 ~~~~ir~SpkK~r~va~~IrG~~v~eAl~~L~f~pkkaa~~v~klL~sA~aNA~~~~gld~~~~L~I~~~~v~~g~~~KR   81 (110)
T 2ftc_M            2 CRRQIKYSKDKMWYLAKLIRGMSIDQALAQLEFNDKKGAKIIKEVLLEAQDMAVRDHNVEFRSNLYIAESTSGRGQCLKR   81 (110)
T ss_pred             CcccceeCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCCCccCeEEEEEEECCCCcccC
Confidence            578999999999999999999999999999999999999999999999999999989999 8999999999999999999


Q ss_pred             CccCCCCCC
Q 030580          167 PRPKAQGRE  175 (175)
Q Consensus       167 ~~pRArGRA  175 (175)
                      ++||||||+
T Consensus        82 ~~prA~GRa   90 (110)
T 2ftc_M           82 IRYHGRGRF   90 (110)
T ss_pred             CCCCCCCCC
Confidence            999999996

>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...

Probab=100.00  E-value=6.2e-35  Score=221.60  Aligned_cols=90  Identities=42%  Similarity=0.539  Sum_probs=88.3

Q ss_pred             ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (175)
Q Consensus        83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp  162 (175)
                      |+++|.++++++||+|+++||++||||+|+||+.||+|||+|+|+.|+++|+||++||++|+|+|+|+|||++||||+||
T Consensus         1 ~~~kA~~~~ir~SpkK~r~va~~IrG~~v~~Al~~L~~~pkkaa~~v~klL~sA~aNAe~n~gld~d~L~I~~~~v~~g~   80 (110)
T 1i4j_A            1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP   80 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred             CeEEEEeCCccCCHHHHHHHHHHHcCCcHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHhcCCChhheEEEEEEECCCC
Confidence            57999999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             CCCCCccCCCCCC
Q 030580          163 SAKRPRPKAQGRE  175 (175)
Q Consensus       163 ~lKR~~pRArGRA  175 (175)
                      +   ++||||||+
T Consensus        81 ~---~~pRA~GRa   90 (110)
T 1i4j_A           81 A---VLPRARGRA   90 (110)
T ss_dssp             E---ECSCSSSCC
T ss_pred             e---EeecCCCCC
Confidence            9   999999996

>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...

Probab=99.97  E-value=1.7e-32  Score=219.63  Aligned_cols=94  Identities=23%  Similarity=0.400  Sum_probs=91.2

Q ss_pred             CCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh------------------------------CCccchhHHH
Q 030580           81 KKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL------------------------------MPYRACYPIF  130 (175)
Q Consensus        81 ~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f------------------------------spKKaAk~I~  130 (175)
                      ...+++|.++++++||+|+++||++||||++++|+.||+|                              ||+|+|+.|+
T Consensus        11 ~~k~~kA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~il   90 (155)
T 1vq8_R           11 PDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFL   90 (155)
T ss_dssp             GGGEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHH
T ss_pred             CCceEEEEeCCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHH
Confidence            3468999999999999999999999999999999999999                              9999999999


Q ss_pred             HHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          131 KLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       131 KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      ++|+||.+||+++ |+|+|+|||.||+||+||++||++|||+||+
T Consensus        91 klL~sA~aNAe~k-gld~d~L~I~~i~v~kg~~~kR~~pRA~GRa  134 (155)
T 1vq8_R           91 DLLENAVGNADHQ-GFDGEAMTIKHVAAHKVGEQQGRKPRAMGRA  134 (155)
T ss_dssp             HHHHHHHHHHHHT-TSCGGGSEEEEEEEEEEEEECCEEECGGGCE
T ss_pred             HHHHHHHHHHHHc-CCChhheEEEEEEECCCccccCCCCCCCCCC
Confidence            9999999999987 9999999999999999999999999999996

>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=99.97  E-value=1.9e-33  Score=232.97  Aligned_cols=94  Identities=64%  Similarity=0.996  Sum_probs=91.6

Q ss_pred             CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCC
Q 030580           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEA  161 (175)
Q Consensus        82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kG  161 (175)
                      .++++|.++++++||+|+++||++||||+|+||+.||+|+|+|+|..|+++|+||++||++|+|+|+|+|||++|+||+|
T Consensus        29 ~~eakA~~r~iRvSpkK~R~Vad~IRG~~V~eAl~iL~f~PkKaA~~V~KlLkSA~ANAe~n~GLD~d~L~I~~i~VnkG  108 (199)
T 3bbo_U           29 CDEITTRGYSISMSVDKARRVIDQIRGRSYAETLMILELMPYRACYPIFKLIYSAAANASHNKQFNKANLIISKAEVNKG  108 (199)
T ss_dssp             -CCBCCCCSCCSSCSSSSSTTHHHHTTCBTTTTTTTGGGCCCTTHHHHHHHHHHHTTHHHHTSSCCSSSCEEEECCCCBC
T ss_pred             CeEEEEEeCCccccHHHHHHHHHHHCCCcHHHHHHHHHHCCHhHHHHHHHHHHHHHHhHHhccCCChhheEEEEEEECCC
Confidence            46899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccCCCCCC
Q 030580          162 TSAKRPRPKAQGRE  175 (175)
Q Consensus       162 p~lKR~~pRArGRA  175 (175)
                      |++||++|||||||
T Consensus       109 p~lKR~~pRArGRa  122 (199)
T 3bbo_U          109 ITLKKVKPRARGRS  122 (199)
T ss_dssp             CCCCCCCCSSSSCS
T ss_pred             CcccCCCCCCCCCC
Confidence            99999999999996

>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}

Probab=99.97  E-value=6.9e-32  Score=216.16  Aligned_cols=93  Identities=26%  Similarity=0.345  Sum_probs=90.5

Q ss_pred             CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh-----------------------------CCccchhHHHHH
Q 030580           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL-----------------------------MPYRACYPIFKL  132 (175)
Q Consensus        82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f-----------------------------spKKaAk~I~Kl  132 (175)
                      .++++|.++++++||+|+++||++||||++++|+.||+|                             ||+|+|+.|+++
T Consensus        15 ~~~akA~~~~~rvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilkl   94 (155)
T 3j21_S           15 KRMARASARDLRISPKLAVEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKV   94 (155)
T ss_dssp             HHEEEEEEEEEESCHHHHHHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHH
T ss_pred             CeeEEEEeCCcccCHHHHHHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHH
Confidence            368999999999999999999999999999999999999                             999999999999


Q ss_pred             HHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          133 IYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       133 L~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      |+||++||++ +|||+|+|||.||+||+||++||++|||+||+
T Consensus        95 L~sA~aNAe~-kgld~d~L~I~~i~vnkgp~~kR~~pRA~GR~  136 (155)
T 3j21_S           95 LLNVKNNAVQ-KGLDPDKLKIIHIAAHKGPVLRGWYPRAFGRA  136 (155)
T ss_dssp             HHHHHHHHHH-HTCCGGGCEEEEEEEEEEEEECCEEECSTTCE
T ss_pred             HHHHHHHHHH-cCCChhheEEEEEEecCCCcccCCCCCCCCCC
Confidence            9999999987 69999999999999999999999999999996

>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}

Probab=99.97  E-value=5.4e-31  Score=216.10  Aligned_cols=93  Identities=22%  Similarity=0.344  Sum_probs=89.5

Q ss_pred             CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh----------h----------------------CCccchhHH
Q 030580           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE----------L----------------------MPYRACYPI  129 (175)
Q Consensus        82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~----------f----------------------spKKaAk~I  129 (175)
                      ..+++|.++++++||+|+++||++||||++++|+.||+          |                      ||+|+|++|
T Consensus        12 ~k~akA~~~~lrvS~kk~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~i   91 (184)
T 2zkr_r           12 TKSCKSRGSNLRVHFKNTRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFL   91 (184)
T ss_dssp             TTEEEEEECSCCSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHH
T ss_pred             CeeEEEEecCccCcHHHHHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHH
Confidence            45899999999999999999999999999999999999          9                      999999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      +++|+||.+||+++ |||+|+|||.||+||+||++||++|||+||+
T Consensus        92 lklLksA~aNAe~k-glD~d~L~I~~i~Vnkg~~~kR~~pRA~GRa  136 (184)
T 2zkr_r           92 LHMLKNAESNAELK-GLDVDSLVIEHIQVNKAPKMRRRTYRAHGRI  136 (184)
T ss_dssp             HHHHHHHHHHHHHH-TSCTTTCEEEEEEEC-CCCEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHHc-CCChhheEEEEEEECCCccCcCCCCCCCCCC
Confidence            99999999999985 9999999999999999999999999999995

>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q

Probab=99.96  E-value=1.3e-30  Score=213.76  Aligned_cols=93  Identities=28%  Similarity=0.365  Sum_probs=89.8

Q ss_pred             CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------CCccchhHH
Q 030580           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYPI  129 (175)
Q Consensus        82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f--------------------------------spKKaAk~I  129 (175)
                      .++++|.++|+++||+|+++||++||||++++|+.+|+|                                ||+|+|++|
T Consensus        14 ~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~i   93 (183)
T 4a17_Q           14 AKAVKTSASDLRVHFKNTYEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVI   93 (183)
T ss_dssp             TSEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHH
T ss_pred             CeeEEEEeCCccCchHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHH
Confidence            468999999999999999999999999999999999995                                899999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      +++|+||++||++ +|||+|+|||.||+||+||.+||++|||+||+
T Consensus        94 lklLksA~aNAe~-kgLD~d~L~I~hi~Vnkgp~~kR~~pRA~GRa  138 (183)
T 4a17_Q           94 LGLLDNLSANAQA-KSLNTANLVIQHGQVNRAQKGRRRTYRAHGRI  138 (183)
T ss_dssp             HHHHHHHHHHTTT-TTCCSTTEEEEEEEEEECCCEEEEEEETTTEE
T ss_pred             HHHHHHHHHHHHh-cCCChhheEEEEEEECCCCcccCcCccCCCCc
Confidence            9999999999997 49999999999999999999999999999996

>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N

Probab=99.96  E-value=1.4e-30  Score=213.69  Aligned_cols=93  Identities=27%  Similarity=0.369  Sum_probs=89.9

Q ss_pred             CceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhh--------------------------------CCccchhHH
Q 030580           82 KAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILEL--------------------------------MPYRACYPI  129 (175)
Q Consensus        82 ~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~f--------------------------------spKKaAk~I  129 (175)
                      .++++|.++|+++||+|+++||++||||++++|+.||+|                                ||+|+|++|
T Consensus        12 ~k~akA~~~~lrvS~kk~reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~i   91 (184)
T 3u5e_P           12 AKSASARGSYLRVSFKNTRETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFV   91 (184)
T ss_dssp             GGEEEEEEEEECSCHHHHHHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHH
T ss_pred             CceEEEEeCCccccHHHHHHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHH
Confidence            368999999999999999999999999999999999995                                899999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      +++|+||.+||++ +|||+|+|||.||+||+||++||++|||+||+
T Consensus        92 lklLksA~aNAe~-kgLD~d~L~I~~i~Vnkgp~~kR~~pRA~GRa  136 (184)
T 3u5e_P           92 QGLLQNAAANAEA-KGLDATKLYVSHIQVNQAPKQRRRTYRAHGRI  136 (184)
T ss_dssp             HHHHHHHHHHHHH-TTCCTTTEEEEEEEEEECCCEEEEEEEGGGEE
T ss_pred             HHHHHHHHHHHHH-cCCChhheEEEEEEECCCCcccCCCCCCCCCC
Confidence            9999999999997 79999999999999999999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	175
d2zjrp1	127	d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococ	2e-29
d2gycq1	106	d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escheric	3e-29
d1i4ja_	110	d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquat	4e-25
d1vqor1	150	d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon	2e-18

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]} Length = 127

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

 Score =  102 bits (257), Expect = 2e-29
 Identities = 34/101 (33%), Positives = 55/101 (54%)

Query: 74  NNRNKTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLI 133
             + +   +    A A+Y+ MS  KVR V+D IRG+S ++   +L  +P  A  P+ K++
Sbjct: 6   QRKQQVKLRKPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVL 65

Query: 134 YSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
            SA AN +HN    E  L + +A V+   + KR  P+A+G 
Sbjct: 66  NSAKANALHNDEMLEDRLFVKEAYVDAGPTLKRLIPRARGS 106

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]} Length = 106

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

 Score =  101 bits (254), Expect = 3e-29
 Identities = 35/88 (39%), Positives = 47/88 (53%)

Query: 87  ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGF 146
           A  R+   SA KVR V D IRG+   + L IL     +A   + K++ SA AN  HN G 
Sbjct: 1   AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGA 60

Query: 147 NEASLVIAKAEVNEATSAKRPRPKAQGR 174
           +   L + K  V+E  S KR  P+A+GR
Sbjct: 61  DIDDLKVTKIFVDEGPSMKRIMPRAKGR 88

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]} Length = 110

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

 Score = 91.4 bits (227), Expect = 4e-25
 Identities = 38/91 (41%), Positives = 51/91 (56%), Gaps = 3/91 (3%)

Query: 84  EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHN 143
           E  A ARY+ +S  KVR V+D IRG+S EE   IL     R  Y + K++ SAAAN V+N
Sbjct: 2   EAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNN 61

Query: 144 MGFNEASLVIAKAEVNEATSAKRPRPKAQGR 174
               E  L +  A V+E  +     P+A+GR
Sbjct: 62  HDALEDRLYVKAAYVDEGPAVL---PRARGR 89

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 150

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 75.4 bits (185), Expect = 2e-18
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 31/127 (24%)

Query: 78  KTNKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------ 119
           + +      A  R   MS    + +  +I+G++  E +  LE                  
Sbjct: 7   EADPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGV 66

Query: 120 ------------LMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRP 167
                         P +A      L+ +A  N   + GF+  ++ I     ++    +  
Sbjct: 67  GHKSKVDGWDAGRYPEKASKAFLDLLENAVGNA-DHQGFDGEAMTIKHVAAHKVGEQQGR 125

Query: 168 RPKAQGR 174
           +P+A GR
Sbjct: 126 KPRAMGR 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	175
d2zjrp1	127	Ribosomal protein L22 {Deinococcus radiodurans [Ta	100.0
d1i4ja_	110	Ribosomal protein L22 {Thermus aquaticus, subsp. T	100.0
d2gycq1	106	Ribosomal protein L22 {Escherichia coli [TaxId: 56	99.97
d1vqor1	150	Ribosomal protein L22 {Archaeon Haloarcula marismo	99.96
d1r9pa_	134	NifU-like protein HI0377 {Haemophilus influenzae [	84.09

>d2zjrp1 d.55.1.1 (P:8-134) Ribosomal protein L22 {Deinococcus radiodurans [TaxId: 1299]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Deinococcus radiodurans [TaxId: 1299]

Probab=100.00  E-value=2.3e-34  Score=222.02  Aligned_cols=93  Identities=37%  Similarity=0.519  Sum_probs=90.3

Q ss_pred             ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (175)
Q Consensus        83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp  162 (175)
                      +++.|..+|+++||+|+++|+++||||+|+||+.||+|+|+|+|..|.++|+||++||++++|+|+|+|||.+||||+||
T Consensus        15 ~~~~A~~k~ir~Sp~K~r~v~~~IrG~~v~eAl~~L~f~~kkaa~~v~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~   94 (127)
T d2zjrp1          15 KPGFAVAKYVRMSPRKVRLVVDVIRGKSVQDAEDLLRFIPRSASEPVAKVLNSAKANALHNDEMLEDRLFVKEAYVDAGP   94 (127)
T ss_dssp             CTTEEEEEEESSCHHHHHHHHHHSTTSBHHHHHHHHHHCCCTTHHHHHHHHTTTHHHHTTTTCCCGGGEEEEEEEEEECC
T ss_pred             chhhhhhcccccCHHHHHHHHHHHcCCcHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHhcccCcccceEEEEEEECCCC
Confidence            45679999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             CCCCCccCCCCCC
Q 030580          163 SAKRPRPKAQGRE  175 (175)
Q Consensus       163 ~lKR~~pRArGRA  175 (175)
                      ++||++|||||||
T Consensus        95 ~~KR~~prArGRa  107 (127)
T d2zjrp1          95 TLKRLIPRARGSA  107 (127)
T ss_dssp             CEEEEEECSTTCE
T ss_pred             cccCCCCCcCCCC
Confidence            9999999999996

>d1i4ja_ d.55.1.1 (A:) Ribosomal protein L22 {Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Thermus aquaticus, subsp. Thermus thermophilus [TaxId: 271]

Probab=100.00  E-value=1.4e-33  Score=212.71  Aligned_cols=90  Identities=42%  Similarity=0.546  Sum_probs=87.6

Q ss_pred             ceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCC
Q 030580           83 AEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEAT  162 (175)
Q Consensus        83 ~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp  162 (175)
                      ||++|..+|+++||+|+++|+++||||+|+||+.||+|+|+|+|+.|.|+|+||++||++++|+|+|+|||.++|||+||
T Consensus         1 Me~~A~~k~ir~Sp~K~r~va~~IrG~~v~~Al~~L~f~~~kaa~~i~k~l~SA~aNA~~~~~~d~~~L~I~~~~v~~G~   80 (110)
T d1i4ja_           1 MEAKAIARYVRISPRKVRLVVDLIRGKSLEEARNILRYTNKRGAYFVAKVLESAAANAVNNHDALEDRLYVKAAYVDEGP   80 (110)
T ss_dssp             CCEEEEEEEESSCHHHHHHHHHHHTTCBHHHHHHHHHHCCCTTHHHHHHHHHHHHHHHHHTSCCCGGGEEEEEEEEEEEE
T ss_pred             CcEEEEcCccccCHHHHHHHHHHHcCCcHHHHHHHHhcCcchhHHHHHHHHHHHHHHHHhccCCCccceEEEEEEECCCc
Confidence            78999999999999999999999999999999999999999999999999999999999989999999999999999999


Q ss_pred             CCCCCccCCCCCC
Q 030580          163 SAKRPRPKAQGRE  175 (175)
Q Consensus       163 ~lKR~~pRArGRA  175 (175)
                      ++|   ||||||+
T Consensus        81 ~~k---~rarGRa   90 (110)
T d1i4ja_          81 AVL---PRARGRA   90 (110)
T ss_dssp             EEC---SCSSSCC
T ss_pred             eEC---hhhccCC
Confidence            876   7999996

>d2gycq1 d.55.1.1 (Q:5-110) Ribosomal protein L22 {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=6.5e-35  Score=218.71  Aligned_cols=89  Identities=39%  Similarity=0.447  Sum_probs=87.0

Q ss_pred             EEeCccccCHHHHHHHHHHHcCCCHHHHHHHHhhCCccchhHHHHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCC
Q 030580           87 ASARYLHMSAHKVRRVIDQIRGRSYEETLMILELMPYRACYPIFKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKR  166 (175)
Q Consensus        87 A~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~fspKKaAk~I~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR  166 (175)
                      |..+|+|+||+|+++||++||||+|+||+.||+|+|+|+|+.|.|+|+||++||++++|+|+|+|||.++|||+||++||
T Consensus         1 A~~k~ir~Sp~K~r~va~~IrG~~v~~A~~~L~f~~kkaa~~i~k~l~sA~aNA~~~~~~d~~~L~I~~~~v~~G~~~KR   80 (106)
T d2gycq1           1 AKHRHARSSAQKVRLVADLIRGKKVSQALDILTYTNKKAAVLVKKVLESAIANAEHNDGADIDDLKVTKIFVDEGPSMKR   80 (106)
T ss_dssp             CCCCCCCCCSSSSCSSSSSSSSSCSHHHHSSSSSCCSSTTSSTTTSSSSSSTTTSTTTTCCTTTEEECCCCCCCCCBCCC
T ss_pred             CCcCccccCHHHHHHHHHHHcCCcHHHHHHHHccCCcccchHHHHHHHHHHHHHHHhcCCCHHHhEEEEEEECCCCcccC
Confidence            46799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CccCCCCCC
Q 030580          167 PRPKAQGRE  175 (175)
Q Consensus       167 ~~pRArGRA  175 (175)
                      ++||||||+
T Consensus        81 ~~~rarGRa   89 (106)
T d2gycq1          81 IMPRAKGRA   89 (106)
T ss_dssp             BCCCTTTCC
T ss_pred             cCCcccCCC
Confidence            999999997

>d1vqor1 d.55.1.1 (R:1-150) Ribosomal protein L22 {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: Ribosomal protein L22
superfamily: Ribosomal protein L22
family: Ribosomal protein L22
domain: Ribosomal protein L22
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.96  E-value=2e-30  Score=204.19  Aligned_cols=95  Identities=23%  Similarity=0.394  Sum_probs=90.5

Q ss_pred             CCCceEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh------------------------------hCCccchhHH
Q 030580           80 NKKAEVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE------------------------------LMPYRACYPI  129 (175)
Q Consensus        80 ~~~~e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~------------------------------fspKKaAk~I  129 (175)
                      ..+..++|..+++++||+|+++||++||||+|++|+.||+                              |+|+|+|+.|
T Consensus         9 ~~~~~~kA~~~~~riS~kK~~~va~~IrGk~v~~A~~~L~~v~~kk~avp~~~~~~~v~~~~~~~~~~~g~~p~kaa~~i   88 (150)
T d1vqor1           9 DPDTTAKAMLRERQMSFKHSKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAF   88 (150)
T ss_dssp             CTTTEEEEEEEEECSCHHHHHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSCSBEECCHHHHHHH
T ss_pred             CCCceEEEEeCCCcCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhHHHHHHHHhhhhhhhhhhhcCCCcccChHHHHHHH
Confidence            4456899999999999999999999999999999999997                              6899999999


Q ss_pred             HHHHHHHHHhhhhcCCCCCCCeEEEEEEEcCCCCCCCCccCCCCCC
Q 030580          130 FKLIYSAAANGVHNMGFNEASLVIAKAEVNEATSAKRPRPKAQGRE  175 (175)
Q Consensus       130 ~KlL~SA~aNAe~~~glD~d~L~I~ea~V~kGp~lKR~~pRArGRA  175 (175)
                      +++|+||.+||++ .|+|+|+|||.+||||+||++||++|||||||
T Consensus        89 ~kll~sa~aNA~~-~~~d~~~L~I~~~~v~kG~~~KR~~prArGRa  133 (150)
T d1vqor1          89 LDLLENAVGNADH-QGFDGEAMTIKHVAAHKVGEQQGRKPRAMGRA  133 (150)
T ss_dssp             HHHHHHHHHHHHH-TTSCGGGSEEEEEEEEEEEEECCEEECGGGCE
T ss_pred             HHHHHHHHHHHHh-cCCChhHeEEEEEEECCCccccCcCcccCCCC
Confidence            9999999999987 58999999999999999999999999999996

>d1r9pa_ d.224.1.2 (A:) NifU-like protein HI0377 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a+b)
fold: SufE/NifU
superfamily: SufE/NifU
family: NifU/IscU domain
domain: NifU-like protein HI0377
species: Haemophilus influenzae [TaxId: 727]

Probab=84.09  E-value=0.73  Score=33.02  Aligned_cols=67  Identities=16%  Similarity=0.126  Sum_probs=53.9

Q ss_pred             eEEEEeCccccCHHHHHHHHHHHcCCCHHHHHHHHh--------hCC--ccchhHHHHHHHHHHHhhhhcCCCCCCC
Q 030580           84 EVSASARYLHMSAHKVRRVIDQIRGRSYEETLMILE--------LMP--YRACYPIFKLIYSAAANGVHNMGFNEAS  150 (175)
Q Consensus        84 e~kA~~r~iriSpKKlr~Var~IRGk~V~eAi~qL~--------fsp--KKaAk~I~KlL~SA~aNAe~~~glD~d~  150 (175)
                      .++..+.---+|--=+-.++.+|+|++++||..+-.        ..|  .+.|....++|+.|+++.+...|.+..+
T Consensus        55 di~f~~~GCais~Asas~~~e~i~Gkt~~ea~~i~~~~i~e~l~~~p~r~~Ca~L~~~al~~al~~y~~k~g~~~~~  131 (134)
T d1r9pa_          55 DAKFKTYGCGSAIASSSLITEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQGLEHHH  131 (134)
T ss_dssp             EEEEEEESSSSHHHHHHHHHHHSSSSBHHHHTTSHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHHHHHHTTTCCCSC
T ss_pred             EEEEEeccCcccHhHHHHHHHHHHhCCHHHHHHhcchHHHHhhcCCCchhHHHHHHHHHHHHHHHHHHHhcCCchhh
Confidence            567777778888888999999999999999976533        233  5578888999999999998777877653