Citrus Sinensis ID: 030795

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Secondary Structure (PSIPRED)
cccccccHHHHHHHHccccccccccccccccccccccccccccEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccccccccHHHHHHccccccccccccEEEcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHccccccccccccEEEEccccccccccccEEEEEEEcccHHcccccHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHEEEEEccccccccccccHHHHHHcccccEEccHcEEEEcccccccccccEEEEc
Coil and Loop (DISEMBL)
MAAMNSSVLACNYAisgsagsselnAKIVSvstpavhghkmpviRAQQvdvskesrgtdGRRAAMALLAVTLFTTATAaasssanagvideYLERSKANKELNDQKRLATSGANFARAYTvqfgtckfpenftgcqdlakqkkvpfisddleleckgkdkykcgsnvfwkw
Flexible Loop (DISEMBL)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTpavhghkmpviraqqvdvskesrgtDGRRAAMALLAVTLFTTATaaasssanagVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDdleleckgkdkykcgsnvfwkw
Low Complexity Region (SEG)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRaamallavtlfttataaasssanaGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Disordered region (IsUnstruct)
********LACNYAI************IVSV*******************************AAMALLAVTLFTTATAAA******GVIDEY******************SGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWK*
Disordered Region (DISOPRED)
*****SS*LACNYAISGSAGSSELNAKIVSVSTPAVHGHKM***********************MALLAVTLFTTATAAASSSANAGVIDEY******************SGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Disordered Region (DISEMBL)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQ***********GRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Disordered Region (DISPRO)
*****S*VLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
P49107	171	Photosystem I reaction ce	yes	no	0.976	0.976	0.731	1e-67
O65107	112	Photosystem I reaction ce	N/A	no	0.532	0.812	0.824	5e-42
P31093	145	Photosystem I reaction ce	N/A	no	0.619	0.731	0.773	5e-41
Q9SBN5	139	Photosystem I reaction ce	N/A	no	0.456	0.561	0.576	2e-20

>sp|P49107|PSAN_ARATH Photosystem I reaction center subunit N, chloroplastic OS=Arabidopsis thaliana GN=PSAN PE=1 SV=2

 Score =  254 bits (650), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 147/175 (84%), Gaps = 8/175 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK NKELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna. Plays an important role in docking plastocyanin to the PSI complex. Does not bind pigments.
Arabidopsis thaliana (taxid: 3702)

>sp|O65107|PSAN_MAIZE Photosystem I reaction center subunit N, chloroplastic (Fragment) OS=Zea mays GN=PSAN PE=3 SV=1

 Score =  170 bits (430), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 75/91 (82%), Positives = 86/91 (94%)

Query: 81  SSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAK 140
           + SA A + DEYLE+SKANKELND+KRLATSGANFARAYTV+FG+C+FP NFTGCQDLAK
Sbjct: 22  TGSAKATIFDEYLEKSKANKELNDKKRLATSGANFARAYTVEFGSCQFPYNFTGCQDLAK 81

Query: 141 QKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           QKKVPFISDDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 82  QKKVPFISDDLEIECEGKEKFKCGSNVFWKW 112

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Zea mays (taxid: 4577)

>sp|P31093|PSAN_HORVU Photosystem I reaction center subunit N, chloroplastic OS=Hordeum vulgare GN=PSAN PE=2 SV=1

 Score =  166 bits (421), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 82/106 (77%), Positives = 93/106 (87%)

Query: 66  ALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGT 125
           ALL +     ATAA++ SA A V DEYLE+SK NKELND+KR ATSGANFARAYTVQFG+
Sbjct: 40  ALLGLAAVFAATAASAGSARASVFDEYLEKSKLNKELNDKKRAATSGANFARAYTVQFGS 99

Query: 126 CKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           CKFP NFTGCQDLAKQKKVPFI+DDLE+EC+GK+K+KCGSNVFWKW
Sbjct: 100 CKFPYNFTGCQDLAKQKKVPFITDDLEIECEGKEKFKCGSNVFWKW 145

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Hordeum vulgare (taxid: 4513)

>sp|Q9SBN5|PSAN_VOLCA Photosystem I reaction center subunit N, chloroplastic OS=Volvox carteri GN=PSAN PE=2 SV=1

 Score = 98.2 bits (243), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 45/78 (57%), Positives = 61/78 (78%)

Query: 88  VIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFI 147
           V+++ L +S ANK LN++KRLATS AN AR+ TV  GTC+FPENF GC++LA  K V +I
Sbjct: 55  VVEDLLAKSAANKALNNKKRLATSYANLARSRTVYDGTCQFPENFFGCEELAFNKGVKYI 114

Query: 148 SDDLELECKGKDKYKCGS 165
           ++DL++EC+GKD   CGS
Sbjct: 115 AEDLKIECEGKDAKSCGS 132

May function in mediating the binding of the antenna complexes to the PSI reaction center and core antenna.

Volvox carteri (taxid: 3067)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
224093408	172	predicted protein [Populus trichocarpa]	0.982	0.976	0.782	5e-68
118488894	172	unknown [Populus trichocarpa x Populus d	0.982	0.976	0.782	1e-67
357464531	172	Photosystem I reaction center subunit N	0.976	0.970	0.784	3e-67
297797407	171	photosystem I reaction center subunit ps	0.976	0.976	0.737	2e-66
15237593	171	photosystem I reaction center subunit N	0.976	0.976	0.731	6e-66
224080971	172	predicted protein [Populus trichocarpa]	0.982	0.976	0.771	5e-65
449461859	171	PREDICTED: photosystem I reaction center	0.982	0.982	0.741	1e-64
449507490	171	PREDICTED: photosystem I reaction center	0.982	0.982	0.741	1e-64
255571379	169	Photosystem I reaction center subunit N,	0.976	0.988	0.763	3e-64
351722715	167	uncharacterized protein LOC100499729 [Gl	0.970	0.994	0.726	8e-64

>gi|224093408|ref|XP_002309915.1| predicted protein [Populus trichocarpa] gi|222852818|gb|EEE90365.1| predicted protein [Populus trichocarpa]

 Score =  261 bits (668), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 137/175 (78%), Positives = 154/175 (88%), Gaps = 7/175 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++  V G K+PVIRAQQ    S+E +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASLVVSGPKLPVIRAQQTRADSREMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
            ++GRRAAM  LA TLFT+A AA+S++A  GVI+EYLE+SKANKELND+KRLATSGANFA
Sbjct: 60  ASEGRRAAMVYLAATLFTSAAAASSANA--GVIEEYLEKSKANKELNDKKRLATSGANFA 117

Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           RA+TVQFGTCKFPENFTGCQDLAKQKKVPFISDDL LEC+GKDKYKCGSNVFWKW
Sbjct: 118 RAFTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|118488894|gb|ABK96256.1| unknown [Populus trichocarpa x Populus deltoides] gi|118489284|gb|ABK96447.1| unknown [Populus trichocarpa x Populus deltoides]

 Score =  260 bits (665), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 137/175 (78%), Positives = 154/175 (88%), Gaps = 7/175 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++  V G K+PVIRAQQ    S+E +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASLVVCGPKLPVIRAQQTRADSREMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
            ++GRRAAM  LA TLFT+A AA+S++A  GVI+EYLE+SKANKELND+KRLATSGANFA
Sbjct: 60  ASEGRRAAMVYLAATLFTSAAAASSANA--GVIEEYLEKSKANKELNDKKRLATSGANFA 117

Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           RA+TVQFGTCKFPENFTGCQDLAKQKKVPFISDDL LEC+GKDKYKCGSNVFWKW
Sbjct: 118 RAFTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 172

Source: Populus trichocarpa x Populus deltoides

Species: Populus trichocarpa x Populus deltoides

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357464531|ref|XP_003602547.1| Photosystem I reaction center subunit N [Medicago truncatula] gi|355491595|gb|AES72798.1| Photosystem I reaction center subunit N [Medicago truncatula] gi|388492560|gb|AFK34346.1| unknown [Medicago truncatula]

 Score =  259 bits (661), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 138/176 (78%), Positives = 159/176 (90%), Gaps = 9/176 (5%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSV---STPAVHGHKMPVIRAQQVDV--SKES 55
           MAAMNSSVLAC+YAISGS    ELNAK++SV   ++P V G K+P+I+AQQV +  +KES
Sbjct: 1   MAAMNSSVLACSYAISGS----ELNAKLISVPSAASPGVSGIKLPLIKAQQVRIPEAKES 56

Query: 56  RGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANF 115
           R +DGRR A+ALLA TLFTTA +A++SSANAGVI+EYLE+SKANKELND+KRLATSGANF
Sbjct: 57  RASDGRRNALALLAATLFTTAVSASNSSANAGVIEEYLEKSKANKELNDKKRLATSGANF 116

Query: 116 ARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           ARAYTVQFGTCKFPENFTGCQDLAKQKKVPFI++DLELEC+GKDKYKCGSNVFWKW
Sbjct: 117 ARAYTVQFGTCKFPENFTGCQDLAKQKKVPFITEDLELECEGKDKYKCGSNVFWKW 172

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297797407|ref|XP_002866588.1| photosystem I reaction center subunit psi-N [Arabidopsis lyrata subsp. lyrata] gi|297312423|gb|EFH42847.1| photosystem I reaction center subunit psi-N [Arabidopsis lyrata subsp. lyrata]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 129/175 (73%), Positives = 148/175 (84%), Gaps = 8/175 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSKANKELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKANKELNDKKRLATSGANFA 116

Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+DL LEC+GKDKY+CGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDLALECEGKDKYQCGSNVFWKW 171

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237593|ref|NP_201209.1| photosystem I reaction center subunit N [Arabidopsis thaliana] gi|1709825|sp|P49107.2|PSAN_ARATH RecName: Full=Photosystem I reaction center subunit N, chloroplastic; Short=PSI-N; Flags: Precursor gi|1237124|gb|AAA93075.1| PSI-N [Arabidopsis thaliana] gi|10176952|dbj|BAB10272.1| photosystem I reaction centre subunit psaN precursor [Arabidopsis thaliana] gi|17065518|gb|AAL32913.1| photosystem I reaction centre subunit psaN precursor [Arabidopsis thaliana] gi|20148531|gb|AAM10156.1| photosystem I reaction center subunit psaN precursor [Arabidopsis thaliana] gi|332010449|gb|AED97832.1| photosystem I reaction center subunit N [Arabidopsis thaliana]

 Score =  254 bits (650), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 128/175 (73%), Positives = 147/175 (84%), Gaps = 8/175 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
           MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct: 1   MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
           G++GRR+AM  LA TLF+TA  A S+SANAGVIDEYLERSK NKELND+KRLATSGANFA
Sbjct: 59  GSNGRRSAMVFLAATLFSTA--AVSASANAGVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           RA+TVQFG+CKFPENFTGCQDLAKQKKVPFIS+D+ LEC+GKDKYKCGSNVFWKW
Sbjct: 117 RAFTVQFGSCKFPENFTGCQDLAKQKKVPFISEDIALECEGKDKYKCGSNVFWKW 171

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224080971|ref|XP_002306249.1| predicted protein [Populus trichocarpa] gi|118486634|gb|ABK95154.1| unknown [Populus trichocarpa] gi|222855698|gb|EEE93245.1| predicted protein [Populus trichocarpa]

 Score =  251 bits (642), Expect = 5e-65,   Method: Compositional matrix adjust.
 Identities = 135/175 (77%), Positives = 153/175 (87%), Gaps = 7/175 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDV-SKESR 56
           MAAMNSSVLACNYAISG+ GSSELNAKIVS   V++P V G K+P+IRAQQ    SKE +
Sbjct: 1   MAAMNSSVLACNYAISGT-GSSELNAKIVSMPAVASPVVSGPKLPIIRAQQARADSKEMK 59

Query: 57  GTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFA 116
            ++GRRAA+  LA T     +AAA++SANAGVI++YLE+SKANKELND+KRLATSGANFA
Sbjct: 60  ASEGRRAALVYLAAT--LFTSAAAAASANAGVIEDYLEKSKANKELNDKKRLATSGANFA 117

Query: 117 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           RAYTVQFGTCKFPENFTGCQDLAKQKKVPFIS+DL LEC+GKDKYKCGSNVFWKW
Sbjct: 118 RAYTVQFGTCKFPENFTGCQDLAKQKKVPFISEDLALECEGKDKYKCGSNVFWKW 172

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461859|ref|XP_004148659.1| PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 149/174 (85%), Gaps = 6/174 (3%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIV---SVSTPAVHGHKMPVIRAQQVDVSKESRG 57
           MA MNSSVLACNYAISG AGS++LN+K+    SV++P V G+K+P IRAQQ  V +    
Sbjct: 1   MATMNSSVLACNYAISG-AGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQTKVPEAK-- 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117
            DGRR A+  L  +LF  A AA++SSANAGVI++YLE+SKANKELND+KRLATSGANFAR
Sbjct: 58  NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 117

Query: 118 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           AYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELEC+GKDKYKCGSNVFWKW
Sbjct: 118 AYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449507490|ref|XP_004163047.1| PREDICTED: photosystem I reaction center subunit N, chloroplastic-like [Cucumis sativus]

 Score =  250 bits (639), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 129/174 (74%), Positives = 149/174 (85%), Gaps = 6/174 (3%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIV---SVSTPAVHGHKMPVIRAQQVDVSKESRG 57
           MA MNSSVLACNYAISG AGS++LN+K+    SV++P V G+K+P IRAQQ  V +    
Sbjct: 1   MATMNSSVLACNYAISG-AGSADLNSKLTAAPSVASPGVVGYKLPAIRAQQAKVPEAK-- 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117
            DGRR A+  L  +LF  A AA++SSANAGVI++YLE+SKANKELND+KRLATSGANFAR
Sbjct: 58  NDGRRTALLYLGASLFAAAAAASNSSANAGVIEDYLEKSKANKELNDKKRLATSGANFAR 117

Query: 118 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           AYTV+FGTCKFPENFTGCQDLAKQKKVPFI+DDLELEC+GKDKYKCGSNVFWKW
Sbjct: 118 AYTVEFGTCKFPENFTGCQDLAKQKKVPFITDDLELECEGKDKYKCGSNVFWKW 171

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571379|ref|XP_002526638.1| Photosystem I reaction center subunit N, chloroplast precursor, putative [Ricinus communis] gi|223534030|gb|EEF35750.1| Photosystem I reaction center subunit N, chloroplast precursor, putative [Ricinus communis]

 Score =  249 bits (635), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 132/173 (76%), Positives = 145/173 (83%), Gaps = 6/173 (3%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELN--AKIVSVSTPAVHGHKMPVIRAQQVDVSKESRGT 58
           MAAMNSSVLACNYAISG+A SSEL+  A + S   P V G K+PVIRAQ+   + +S+  
Sbjct: 1   MAAMNSSVLACNYAISGTA-SSELSKLASVPSAVFPTVSGPKLPVIRAQRAKPASDSKA- 58

Query: 59  DGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARA 118
           DGRRAAM  L +      TAAA SSANAGVI+EYLE+SKANKELND+KRLATSGANFARA
Sbjct: 59  DGRRAAM--LCLAATLFTTAAAVSSANAGVIEEYLEKSKANKELNDKKRLATSGANFARA 116

Query: 119 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDL LEC+GKDKYKCGSNVFWKW
Sbjct: 117 YTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLALECEGKDKYKCGSNVFWKW 169

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722715|ref|NP_001235206.1| uncharacterized protein LOC100499729 [Glycine max] gi|255626111|gb|ACU13400.1| unknown [Glycine max]

 Score =  248 bits (632), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 125/172 (72%), Positives = 151/172 (87%), Gaps = 6/172 (3%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHKMPVIRAQ-QVDVSKESRGTD 59
           MAAMNSSVLAC+YAISG+A  SELN K+ SV+  A  G+K+P+I+A+ +V  +KES G  
Sbjct: 1   MAAMNSSVLACSYAISGAA-CSELNGKVTSVAYVACSGYKLPLIKAEARVPKAKESEG-- 57

Query: 60  GRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAY 119
           GRR A+ LLA TLFT+A + +S++A  G+I++YLERSKANKELND+KRLAT+GANFARAY
Sbjct: 58  GRRGALVLLAATLFTSAASNSSANA--GIIEDYLERSKANKELNDKKRLATTGANFARAY 115

Query: 120 TVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           TV+FG+CKFPENFTGCQDLAKQKKVPF+SDDLELEC+GKDKYKCGSNVFWKW
Sbjct: 116 TVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLELECEGKDKYKCGSNVFWKW 167

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
TAIR|locus:2164371	181	PSAN [Arabidopsis thaliana (ta	0.807	0.762	0.602	3e-37

TAIR|locus:2164371 PSAN [Arabidopsis thaliana (taxid:3702)]

 Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
 Identities = 88/146 (60%), Positives = 101/146 (69%)

Query:     1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVSTPAVHGHK----MPVIRAQQVDVSKESR 56
             MAAMNSSVL C+YAI+GS GS ELN K+  V++    G K    MPVI+AQ+V V  +  
Sbjct:     1 MAAMNSSVLTCSYAIAGS-GSVELNQKVGLVNSSVGFGQKKQMIMPVIKAQRV-VGDDVD 58

Query:    57 GTDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFA 116
             G++GRR                        GVIDEYLERSK NKELND+KRLATSGANFA
Sbjct:    59 GSNGRRSAMVFLAATLFSTAAVSASANA--GVIDEYLERSKTNKELNDKKRLATSGANFA 116

Query:   117 RAYTVQFGTCKFPENFTGCQDLAKQK 142
             RA+TVQFG+CKFPENFTGCQDLAKQK
Sbjct:   117 RAFTVQFGSCKFPENFTGCQDLAKQK 142


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.382    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       147   0.00091  103 3  11 22  0.49    31
                                                     30  0.50    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  592 (63 KB)
  Total size of DFA:  139 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.69u 0.09s 12.78t   Elapsed:  00:00:01
  Total cpu time:  12.69u 0.09s 12.78t   Elapsed:  00:00:01
  Start:  Mon May 20 18:59:14 2013   End:  Mon May 20 18:59:15 2013

GO:0005516 "calmodulin binding" evidence=IEA;TAS;IPI

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA;TAS

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA;TAS

GO:0015979 "photosynthesis" evidence=IEA

GO:0042651 "thylakoid membrane" evidence=IEA

GO:0030093 "chloroplast photosystem I" evidence=IPI

GO:0009543 "chloroplast thylakoid lumen" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P31093	PSAN_HORVU	No assigned EC number	0.7735	0.6198	0.7310	N/A	no
P49107	PSAN_ARATH	No assigned EC number	0.7314	0.9766	0.9766	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	171
PLN00054	139	PLN00054, PLN00054, photosystem I reaction center	2e-72
pfam05479	138	pfam05479, PsaN, Photosystem I reaction centre sub	2e-64
PLN00078	122	PLN00078, PLN00078, photosystem I reaction center	0.001

>gnl|CDD|215042 PLN00054, PLN00054, photosystem I reaction center subunit N; Provisional

 Score =  214 bits (546), Expect = 2e-72
 Identities = 100/140 (71%), Positives = 112/140 (80%), Gaps = 4/140 (2%)

Query: 34  PAVHGHKMPVIRAQQV--DVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDE 91
            AV   KMPVI+AQ+V          +DGRRAA+  LA TLF+TA AAAS  ANAGVI +
Sbjct: 1   GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTAAAAAS--ANAGVISD 58

Query: 92  YLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDL 151
            L +SKANKELND+KRLATSGANFAR+ TVQ GTCKFPENFTGC+DLAKQKKVPFIS+DL
Sbjct: 59  LLAKSKANKELNDKKRLATSGANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDL 118

Query: 152 ELECKGKDKYKCGSNVFWKW 171
            LEC+GKDK KCGS VFWKW
Sbjct: 119 ALECEGKDKKKCGSKVFWKW 138

Length = 139

>gnl|CDD|114215 pfam05479, PsaN, Photosystem I reaction centre subunit N (PSAN or PSI-N)

 Score =  193 bits (492), Expect = 2e-64
 Identities = 90/132 (68%), Positives = 107/132 (81%), Gaps = 3/132 (2%)

Query: 40  KMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKAN 99
           K+   R  +   +   R +  RR+A+  LA  L   +TAA + SANAGV+DEYLE+SKAN
Sbjct: 10  KVQAARPARA-TTVVVRASAQRRSALLGLAALLG--STAALAPSANAGVVDEYLEKSKAN 66

Query: 100 KELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKD 159
           KELND+KRLATSGANFARA TVQFG+CKFPENFTGCQDLAKQKKVPFI++DL++EC+GKD
Sbjct: 67  KELNDKKRLATSGANFARARTVQFGSCKFPENFTGCQDLAKQKKVPFIAEDLKIECEGKD 126

Query: 160 KYKCGSNVFWKW 171
           K KCGSNVFWKW
Sbjct: 127 KKKCGSNVFWKW 138

This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins. The protein has no known function although it is localised in the thylakoid lumen. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin. Length = 138

>gnl|CDD|165653 PLN00078, PLN00078, photosystem I reaction center subunit N (PsaN); Provisional

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 6/75 (8%)

Query: 58  TDGRRAAMALLAVTLFTTATAA---ASSSANAGVIDEYLERSKANKELNDQKRLATSGAN 114
              +R  ++   +  F T+TAA   A S +   ++ EYL++S+ NKE ND++RL      
Sbjct: 27  MLAQRNGISRRCLLTFLTSTAAIPEAGSESRKALLQEYLKKSEENKEKNDKERLDDY--- 83

Query: 115 FARAYTVQFGTCKFP 129
           + R Y   FG  + P
Sbjct: 84  YKRNYKDYFGLIEGP 98

Length = 122

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
PLN00054	139	photosystem I reaction center subunit N; Provision	100.0
PF05479	138	PsaN: Photosystem I reaction centre subunit N (PSA	100.0
PLN00078	122	photosystem I reaction center subunit N (PsaN); Pr	99.68
KOG3381	161	consensus Uncharacterized conserved protein [Funct	80.5

>PLN00054 photosystem I reaction center subunit N; Provisional

Probab=100.00  E-value=5.1e-73  Score=446.83  Aligned_cols=136  Identities=73%  Similarity=1.079  Sum_probs=130.8

Q ss_pred             CccccCCcceeeeccccc--cccccCcchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhhcc
Q 030795           34 PAVHGHKMPVIRAQQVDV--SKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATS  111 (171)
Q Consensus        34 p~~~~~~lpvi~aq~~~~--~~~~~~~~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS  111 (171)
                      +.+++.++|+|++|++..  ....++++|||++|++||++||++|  +.+++||||||+|||+|||+|||||||||||||
T Consensus         1 ~~~s~~~~~~ika~r~~~A~~~~~~~~~grraa~~~Laa~l~~~a--a~~~~AnAgv~~d~L~kS~aNKeLNDKKRlATS   78 (139)
T PLN00054          1 GAVSQMKMPVIKAQRVVRATGAVVDASDGRRAALVGLAATLFSTA--AAAASANAGVISDLLAKSKANKELNDKKRLATS   78 (139)
T ss_pred             CccccccccccccccccccccchhccccchHHHHHHHHHHHHHHH--hcccccchhHHHHHHHHhhhhhhhhhHHhhhhc
Confidence            456788999999999884  7778899999999999999999998  889999999999999999999999999999999


Q ss_pred             cccchhheeeeecccccCCCccchhhHhhcCCCcccccCccceecccccccccCcceecC
Q 030795          112 GANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW  171 (171)
Q Consensus       112 ~aNfaRaytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeGk~~~kCgSnvfwkw  171 (171)
                      ++||+|+||||||+|+||||||||||||+||+||||||||+|||||+|+|+||||+||||
T Consensus        79 ~ANfaRa~TV~~G~C~FP~Nf~GCqdlA~~k~V~flsdDl~iECEGkd~~~CgS~~~~~~  138 (139)
T PLN00054         79 GANFARSRTVQDGTCKFPENFTGCEDLAKQKKVPFISEDLALECEGKDKKKCGSKVFWKW  138 (139)
T ss_pred             chhhhhheeeecccccCCcccccHHHHHhcCCCCccccccceeecCCccceecccccccC
Confidence            999999999999999999999999999999999999999999999999999999999999

>PF05479 PsaN: Photosystem I reaction centre subunit N (PSAN or PSI-N); InterPro: IPR008796 This family contains several Photosystem I reaction centre subunit N (PSI-N) proteins

Probab=100.00  E-value=5.5e-73  Score=446.36  Aligned_cols=131  Identities=73%  Similarity=1.139  Sum_probs=69.0

Q ss_pred             cCCcceeeeccccccccccCcchhHHHHHHHHHHHHHhhhhccccccchhhHHHHHHHhhhhhhhhhhhhhhcccccchh
Q 030795           38 GHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR  117 (171)
Q Consensus        38 ~~~lpvi~aq~~~~~~~~~~~~gRR~al~~LAa~l~~tAa~a~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS~aNfaR  117 (171)
                      ..++|+|++++... ...+++++||++|++|+++|++||  +.+++||+|||+|||+|||+||||||||||+|||+||+|
T Consensus         8 sa~~qai~~~ka~~-~~~~~~~~~Raall~Laa~l~~tA--a~a~~A~A~l~~dyL~KSkaNKelNDKkRlaTs~aNfaR   84 (138)
T PF05479_consen    8 SAKVQAIRAAKAKR-VVVRASDGRRAALLGLAAVLAATA--ASASSARAGLLEDYLEKSKANKELNDKKRLATSYANFAR   84 (138)
T ss_dssp             ---------------------------------------------------SSSSS-SSHSSSSSTTTSS-TSSSSSSTS
T ss_pred             hcccchhhhccCCC-cccccCccchHHHHHHHHHHHHHh--hcCcchhhHHHHHHHHHhHhhhhhhhHHHhhhhhhhhhh
Confidence            34889999998774 456778899999999999999887  678999999999999999999999999999999999999


Q ss_pred             heeeeecccccCCCccchhhHhhcCCCcccccCccceecccccccccCcceecC
Q 030795          118 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW  171 (171)
Q Consensus       118 aytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeGk~~~kCgSnvfwkw  171 (171)
                      +||||||+|+||+|||||||||+||+||||||||+|||||||+|||||||||||
T Consensus        85 ~~tv~fg~c~fP~n~~gc~~la~~~~v~f~sdd~~lecegkd~~kc~s~~~~k~  138 (138)
T PF05479_consen   85 AYTVQFGTCKFPENFTGCQDLAKQKKVPFLSDDLKLECEGKDKYKCGSNVFWKW  138 (138)
T ss_dssp             GTT--TSTSSSSS-SSSSSSS-STT-TTSS--SSSSS-TTTSSS-SSSS-SS--
T ss_pred             heeeecccccCCccchhhHHHHHcCCCceecccceeeecCccccccccceeecC
Confidence            999999999999999999999999999999999999999999999999999999

The protein has no known function although it is localised in the thylakoid lumen []. PSI-N is a small extrinsic subunit at the lumen side and is very likely involved in the docking of plastocyanin.; GO: 0005516 calmodulin binding, 0015979 photosynthesis, 0009522 photosystem I, 0042651 thylakoid membrane; PDB: 2WSE_N 2WSC_N 2WSF_N 2O01_N.

>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional

Probab=99.68  E-value=1e-17  Score=130.73  Aligned_cols=72  Identities=33%  Similarity=0.503  Sum_probs=67.0

Q ss_pred             cccccCcchhHHHHHHHHHHHHHhhhhc-cccccchhhHHHHHHHhhhhhhhhhhhhhhcccccchhheeeeecccccCC
Q 030795           52 SKESRGTDGRRAAMALLAVTLFTTATAA-ASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPE  130 (171)
Q Consensus        52 ~~~~~~~~gRR~al~~LAa~l~~tAa~a-~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS~aNfaRaytv~fG~ckfP~  130 (171)
                      ...+||+.+||++|++|.+    ||+|+ .++.++..+||+||+||++|||.|||+||+   ++|+|+|++||++.+++-
T Consensus        27 ~~a~rng~srr~llt~l~s----taaip~~~~~Sr~~liq~llkkSeeNKakndkERLD---dYYKRNykDYF~fveG~~   99 (122)
T PLN00078         27 MLAQRNGISRRCLLTFLTS----TAAIPEAGSESRKALLQEYLKKSEENKEKNDKERLD---DYYKRNYKDYFGLIEGPA   99 (122)
T ss_pred             HHHHhcchhHHHHHHHHHh----hccCCCCcCchHHHHHHHHHHHhHHhHHHhHHHHHH---HHHHHhHHHHHHHhcccc
Confidence            4578999999999999998    78888 788999999999999999999999999999   999999999999998874

>KOG3381 consensus Uncharacterized conserved protein [Function unknown]

Probab=80.50  E-value=0.59  Score=38.83  Aligned_cols=17  Identities=41%  Similarity=0.589  Sum_probs=13.5

Q ss_pred             hhhhhhhhhhhhhhccc
Q 030795           96 SKANKELNDQKRLATSG  112 (171)
Q Consensus        96 SkaNKelNDKkRlaTS~  112 (171)
                      ..-||.||||+|.|..-
T Consensus       128 ~~vNKQLnDKERVaAA~  144 (161)
T KOG3381|consen  128 EAVNKQLNDKERVAAAL  144 (161)
T ss_pred             HHHHhhhccHHHHHHHh
Confidence            34699999999998443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	171
2wsc_N	170	Improved Model Of Plant Photosystem I Length = 170		2e-57
2o01_N	85	The Structure Of A Plant Photosystem I Supercomplex		1e-42

>pdb|2WSC|N Chain N, Improved Model Of Plant Photosystem I Length = 170

Iteration: 1
 Score =  217 bits (553), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 108/174 (62%), Positives = 129/174 (74%), Gaps = 7/174 (4%)
Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVS---VSTPAVHGHKMPVIRAQQVDVSKESRG 57
           M+AMNS+VLACNYA SG    S+LNAK+ S   V++P +   K+P+I+A Q  V+ ES+ 
Sbjct: 1   MSAMNSTVLACNYARSGC---SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVT-ESKS 56
Query: 58  TDGRRXXXXXXXXXXXXXXXXXXXXXXXXGVIDEYLERSKANKELNDQKRLATSGANFAR 117
             GRR                        GVI+EYLE+SK NKELND+KRLAT+GANFAR
Sbjct: 57  DQGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFAR 116
Query: 118 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           AYTV+FG+CKFPENFTGCQDLAKQKKVPF+SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 117 AYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170

>pdb|2O01|N Chain N, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 85

Iteration: 1
 Score =  168 bits (425), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 75/85 (88%), Positives = 84/85 (98%)
Query: 87  GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPF 146
           GVI+EYLE+SK NKELND+KRLAT+GANFARAYTV+FG+CKFPENFTGCQDLAKQKKVPF
Sbjct: 1   GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPF 60
Query: 147 ISDDLELECKGKDKYKCGSNVFWKW 171
           +SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 61  LSDDLDLECEGKDKYKCGSNVFWKW 85
  Database: pdbaa

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	171
2wsc_N	170	PSAN, PSI-N, photosystem I-N subunit; photosynthes	2e-68
3lw5_N	85	Photosystem I-N subunit, photosystem I reaction ce	8e-52

>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N* Length = 170

 Score =  204 bits (520), Expect = 2e-68
 Identities = 120/174 (68%), Positives = 145/174 (83%), Gaps = 7/174 (4%)

Query: 1   MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRG 57
           M+AMNS+VLACNYA SG    S+LNAK+ S+ +   P +   K+P+I+A Q  V++    
Sbjct: 1   MSAMNSTVLACNYARSGC---SDLNAKLTSMPSVASPQLSALKLPLIKAHQAKVTESKSD 57

Query: 58  TDGRRAAMALLAVTLFTTATAAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFAR 117
             GRR+A+  LA TLFT A AA++SSANAGVI+EYLE+SK NKELND+KRLAT+GANFAR
Sbjct: 58  -QGRRSALVYLAATLFTAAAAASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFAR 116

Query: 118 AYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSNVFWKW 171
           AYTV+FG+CKFPENFTGCQDLAKQKKVPF+SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 117 AYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSNVFWKW 170

>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CL1 PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N* Length = 85

 Score =  159 bits (403), Expect = 8e-52
 Identities = 75/85 (88%), Positives = 84/85 (98%)

Query: 87  GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPF 146
           GVI+EYLE+SK NKELND+KRLAT+GANFARAYTV+FG+CKFPENFTGCQDLAKQKKVPF
Sbjct: 1   GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPF 60

Query: 147 ISDDLELECKGKDKYKCGSNVFWKW 171
           +SDDL+LEC+GKDKYKCGSNVFWKW
Sbjct: 61  LSDDLDLECEGKDKYKCGSNVFWKW 85

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
2wsc_N	170	PSAN, PSI-N, photosystem I-N subunit; photosynthes	100.0
3lw5_N	85	Photosystem I-N subunit, photosystem I reaction ce	100.0
3ux2_A	130	MIP18 family protein FAM96A; immune system, DUF59,	87.25

>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*

Probab=100.00  E-value=1.4e-93  Score=575.23  Aligned_cols=167  Identities=73%  Similarity=1.192  Sum_probs=84.9

Q ss_pred             CccccccccccceecccCCCCcccccceeeccC---CccccCCcceeeeccccccccccCcchhHHHHHHHHHHHHHhhh
Q 030795            1 MAAMNSSVLACNYAISGSAGSSELNAKIVSVST---PAVHGHKMPVIRAQQVDVSKESRGTDGRRAAMALLAVTLFTTAT   77 (171)
Q Consensus         1 maamnssvlac~yaisg~~~~~el~~k~~s~~s---p~~~~~~lpvi~aq~~~~~~~~~~~~gRR~al~~LAa~l~~tAa   77 (171)
                      ||+||||||||||||||   ++|||+|++||||   |.++|+|||+||+||+.. .+....++||++|++||++|+++|+
T Consensus         1 ma~mnssvlac~yaisg---~sel~~k~~s~~s~~~~~~~~~klp~~ka~~~~~-~~~~~~~~rRaAl~~LaA~l~~~aa   76 (170)
T 2wsc_N            1 MSAMNSTVLACNYARSG---CSDLNAKLTSMPSVASPQLSALKLPLIKAHQAKV-TESKSDQGRRSALVYLAATLFTAAA   76 (170)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcccccchhhhhhhhcC---chhhhhhhccCcccccccccccccCcceeeeeec-ccccccchhHHHHHHHHHHHHHHhh
Confidence            99999999999999999   7999999999999   889999999999999774 4445568999999999999999998


Q ss_pred             hccccccchhhHHHHHHHhhhhhhhhhhhhhhcccccchhheeeeecccccCCCccchhhHhhcCCCcccccCccceecc
Q 030795           78 AAASSSANAGVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKG  157 (171)
Q Consensus        78 ~a~a~~A~Agvi~dyL~KSkaNKelNDKkRlaTS~aNfaRaytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeG  157 (171)
                      ++++++||||||+|||+||++|||||||||||||++||+|+||||||+|+||||||||||||+||+||||||||+|||||
T Consensus        77 ~~~~~sA~Agv~~d~L~kS~aNKeLNDKKRlATS~ANfaRa~TV~~GtCkFP~Nf~GCqdlAk~k~V~FlsdDl~lECEG  156 (170)
T 2wsc_N           77 AASNSSANAGVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEG  156 (170)
T ss_dssp             ---------CCCCSCSCSSCSCSSSCCCSSCCSSSSSSCSCTTCCCSCSSCCSCCSCSSSCCCTTCTTSSCCSCCCSCTT
T ss_pred             cccccccccchHHHHHHHhhhhhhhhhhHhhhhcccchhheeeeecccccCCccccchHHHHhcCCCceecccceeeecc
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCcceecC
Q 030795          158 KDKYKCGSNVFWKW  171 (171)
Q Consensus       158 k~~~kCgSnvfwkw  171 (171)
                      ||+|||||||||||
T Consensus       157 kd~~kCgSnvfwkw  170 (170)
T 2wsc_N          157 KDKYKCGSNVFWKW  170 (170)
T ss_dssp             CCCCCSSCSCCCCC
T ss_pred             ccCccccccceecC
Confidence            99999999999999

>3lw5_N Photosystem I-N subunit, photosystem I reaction center subunit IX; photosynthesis, electron transfer, membrane proteins, large, complexes, chromophore; HET: CLA PQN BCR LMU LMG; 3.30A {Pisum sativum} PDB: 2o01_N*

Probab=100.00  E-value=7.7e-62  Score=357.78  Aligned_cols=85  Identities=88%  Similarity=1.533  Sum_probs=84.3

Q ss_pred             hhHHHHHHHhhhhhhhhhhhhhhcccccchhheeeeecccccCCCccchhhHhhcCCCcccccCccceecccccccccCc
Q 030795           87 GVIDEYLERSKANKELNDQKRLATSGANFARAYTVQFGTCKFPENFTGCQDLAKQKKVPFISDDLELECKGKDKYKCGSN  166 (171)
Q Consensus        87 gvi~dyL~KSkaNKelNDKkRlaTS~aNfaRaytv~fG~ckfP~Nf~GCq~lA~~k~V~FlsdDl~lECeGk~~~kCgSn  166 (171)
                      |||+|||+||++|||||||||||||+|||+|+|||+||+|+||+|||||||+|++++||||||||+|||||||+||||||
T Consensus         1 gv~~dllaks~aNKeLnDkKRlaTS~ANfaRs~TV~~G~C~FP~Nf~GCq~~a~~~~V~FlsdD~~lECeGkd~~kcgsn   80 (85)
T 3lw5_N            1 GVIEEYLEKSKTNKELNDKKRLATTGANFARAYTVEFGSCKFPENFTGCQDLAKQKKVPFLSDDLDLECEGKDKYKCGSN   80 (85)
T ss_dssp             CCCCSCSCSSCCCSTTCCCSSCCSSSSSSTTTSSCCCSCSSCCSCCSCSSSCCCTTBTTBSCCSCCCSCCSCCCCCSSTT
T ss_pred             CcHHHHHHHhhhhhhhhhHHHhhhcccchhheeEeecccccCCccccchHHHHhcCCCceecccceeeecCccccccccc
Confidence            68999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ceecC
Q 030795          167 VFWKW  171 (171)
Q Consensus       167 vfwkw  171 (171)
                      |||||
T Consensus        81 vfwkw   85 (85)
T 3lw5_N           81 VFWKW   85 (85)
T ss_dssp             TCCCC
T ss_pred             ceecC
Confidence            99999

>3ux2_A MIP18 family protein FAM96A; immune system, DUF59, 3D domain swapping, protein-protein interaction, alpha and beta protein (A+B); HET: MSE; 1.80A {Homo sapiens} PDB: 3ux3_A

Probab=87.25  E-value=0.11  Score=39.72  Aligned_cols=14  Identities=43%  Similarity=0.760  Sum_probs=12.3

Q ss_pred             hhhhhhhhhhhhhc
Q 030795           97 KANKELNDQKRLAT  110 (171)
Q Consensus        97 kaNKelNDKkRlaT  110 (171)
                      .-||.||||+|.|.
T Consensus       101 ~vnKQl~DKERvaA  114 (130)
T 3ux2_A          101 DINKQINDKERVAA  114 (130)
T ss_dssp             CHHHHHHCHHHHHH
T ss_pred             HHHHhhhhHHHHHH
Confidence            46999999999984

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00