Citrus Sinensis ID: 031010

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------
Protein Sequence
MLTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHcccccccccccccccccccHHHHHHHcccccccccccEEEEEEccccccccccccccHHHHHHHccccccccccccccccEEEEEEEccccccccccccccHHHHHHcHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHccccccccccccccccccccHHHHHHccEEEccccccEEEEEEcccccccEEEEcccccHHHHHcccccEEEEEEcccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHc
Coil and Loop (DISEMBL)
mltddednLLQGINSFrtslgipvltkhkKAACLADEvaedledqpctsinigvkspplsnynrlvkkcdidintnrdgvvlpvcvhdlvptlvltNYTHSSYAQYlnnskfagagvgseddWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Flexible Loop (DISEMBL)
MLTDDEDNLLQGINSfrtslgipvlTKHKKAACLADEVaedledqpctsinigvkspplsnynRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Low Complexity Region (SEG)
MLTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Disordered region (IsUnstruct)
*********LQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYL*
Disordered Region (DISOPRED)
***DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Disordered Region (DISEMBL)
********LLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Disordered Region (DISPRO)
MLTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MLTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	167	2.2.26 [Sep-21-2011]
Q84MC0	200	Uncharacterized GPI-ancho	no	no	0.988	0.825	0.413	4e-35
P59833	196	Uncharacterized GPI-ancho	no	no	0.832	0.709	0.461	5e-32
Q8GUL8	189	Uncharacterized GPI-ancho	no	no	0.772	0.682	0.438	5e-22
Q84VZ5	199	Uncharacterized GPI-ancho	no	no	0.790	0.663	0.421	1e-21

>sp|Q84MC0|UGPI4_ARATH Uncharacterized GPI-anchored protein At3g06035 OS=Arabidopsis thaliana GN=At3g06035 PE=2 SV=1

 Score =  147 bits (370), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 72/174 (41%), Positives = 107/174 (61%), Gaps = 9/174 (5%)

Query: 3   TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
           TD+ED LL GINS+RT+  + +L+K++ A CLADE+A+  +++PCT    S  +    P 
Sbjct: 26  TDEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPGTEPQ 85

Query: 59  LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVG 118
            +NY +++ KC ++++  RDG ++P CV  L   LVLTN+T S Y+  LN+SKF G G+G
Sbjct: 86  FANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIG 145

Query: 119 SEDDWMVVVLTTNTAAGIFASGAHHSVVSE-----IGWKRYAVCLLLGSLVYLV 167
            EDDW+VVVLTTNT  G +++       S      IG   Y V  +  S  + +
Sbjct: 146 KEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSSFCFFL 199

Arabidopsis thaliana (taxid: 3702)

>sp|P59833|UGPI3_ARATH Uncharacterized GPI-anchored protein At5g19250 OS=Arabidopsis thaliana GN=At5g19250 PE=1 SV=1

 Score =  136 bits (343), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 66/143 (46%), Positives = 96/143 (67%), Gaps = 4/143 (2%)

Query: 4   DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPPL 59
           D+ED LL GINS+R SL +  L  +  A CLADE+A+  ++QPCT    S ++   +P  
Sbjct: 28  DEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVPGTTPGF 87

Query: 60  SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
            N   L+ KC ++    RDG +LP CV +L P+LVLTN+T S Y++ LN+SKF G G+GS
Sbjct: 88  PNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGIGIGS 147

Query: 120 EDDWMVVVLTTNTAAGIFASGAH 142
           +D+W+VVVLTT+T  G ++  ++
Sbjct: 148 DDNWIVVVLTTSTPEGSYSPASN 170

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUL8|UGPI1_ARATH Uncharacterized GPI-anchored protein At5g19230 OS=Arabidopsis thaliana GN=At5g19230 PE=1 SV=1

 Score =  103 bits (257), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 61/139 (43%), Positives = 86/139 (61%), Gaps = 10/139 (7%)

Query: 3   TDDEDNLLQGI-NSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSN 61
           TD ED+LL  + N +RT L +  LTK++ A CLADEV + L++QPCT+ N     P    
Sbjct: 26  TDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVVDQLKNQPCTNTNNSAPVPG--- 82

Query: 62  YNRLVKKCDIDINTNRDGVVLPVCV--HDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
            N L+ KC ++    RDGV++ VC   HD  P   L+N+ +S   + LN+SK  G G+GS
Sbjct: 83  -NNLLAKCSLNTTVVRDGVIMQVCFPKHDKNPD--LSNF-NSVVLKNLNDSKITGIGIGS 138

Query: 120 EDDWMVVVLTTNTAAGIFA 138
            D W+VV+LTTNT  G ++
Sbjct: 139 GDIWVVVILTTNTPEGGYS 157

Arabidopsis thaliana (taxid: 3702)

>sp|Q84VZ5|UGPI2_ARATH Uncharacterized GPI-anchored protein At5g19240 OS=Arabidopsis thaliana GN=At5g19240 PE=2 SV=2

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 64/152 (42%), Positives = 88/152 (57%), Gaps = 20/152 (13%)

Query: 3   TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
           TD E+ L    N +R S+ +  L K+K A CLADEV + L++QPCT    S ++    P 
Sbjct: 27  TDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPGTDPG 86

Query: 59  LSNYNRLVKKCDIDINTNRDGVVLPVCV--HDLVPTLVLTNYTHSSYA----QYLNNSKF 112
           + N+  L+ KC ++ N  RDG++L VC   H   P L       SS+A    + LN+SKF
Sbjct: 87  IPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDL-------SSFANVLTKNLNDSKF 139

Query: 113 AGAGVGSEDD--WMVVVLTTNTAAGIFA-SGA 141
            GAGVG + D  W+V VLTTNT  G ++ SGA
Sbjct: 140 TGAGVGIDSDGIWLVTVLTTNTPGGSYSNSGA 171

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
255542610	190	conserved hypothetical protein [Ricinus	0.958	0.842	0.585	4e-48
150036258	196	GPI-anchored protein-like protein II [Cu	0.946	0.806	0.544	9e-41
18405086	200	Glycoprotein membrane precursor GPI-anch	0.808	0.675	0.546	1e-40
449443181	172	PREDICTED: uncharacterized GPI-anchored	0.958	0.930	0.526	4e-40
297853454	200	predicted protein [Arabidopsis lyrata su	0.808	0.675	0.539	6e-40
225450985	196	PREDICTED: uncharacterized GPI-anchored	0.964	0.821	0.518	8e-39
224131028	139	predicted protein [Populus trichocarpa]	0.796	0.956	0.588	2e-38
147801316	252	hypothetical protein VITISV_015337 [Viti	0.910	0.603	0.522	3e-36
255542608	196	conserved hypothetical protein [Ricinus	0.976	0.831	0.487	7e-36
351721661	198	uncharacterized protein LOC100306063 pre	0.970	0.818	0.473	1e-35

>gi|255542610|ref|XP_002512368.1| conserved hypothetical protein [Ricinus communis] gi|223548329|gb|EEF49820.1| conserved hypothetical protein [Ricinus communis]

 Score =  195 bits (496), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 96/164 (58%), Positives = 124/164 (75%), Gaps = 4/164 (2%)

Query: 4   DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYN 63
           D E+++LQGINS+RTSL +P LTK+ KA CLADEVA+ L+DQPC+S   G  S  LSNY 
Sbjct: 29  DKENSVLQGINSYRTSLQLPALTKNDKAGCLADEVADKLQDQPCSSA--GASSVQLSNYP 86

Query: 64  RLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDW 123
            L+ KC IDIN  RDG VLPVCV  LVPTLVLTNYTH+ +A+Y+N+S++ G G+GSEDDW
Sbjct: 87  ELLSKCGIDINHTRDGAVLPVCVPKLVPTLVLTNYTHTQHAKYINDSRYTGVGIGSEDDW 146

Query: 124 MVVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVCLLLGSLVYLV 167
           MVVVL+TNT +G FA    +S++S+IG     +C L+G ++  V
Sbjct: 147 MVVVLSTNTPSGSFAGA--NSLMSKIGCGHCLMCFLMGIMLLFV 188

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|150036258|gb|ABR67421.1| GPI-anchored protein-like protein II [Cucumis melo subsp. melo]

 Score =  171 bits (433), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 91/167 (54%), Positives = 116/167 (69%), Gaps = 9/167 (5%)

Query: 4   DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPC----TSINIGVKSPP- 58
           D+EDNLLQG+NS+R +  +P L K+ KA C+A+E+A+D EDQPC    T  N+    P  
Sbjct: 27  DEEDNLLQGLNSYRQAQNLPPLVKNAKADCIANEMADDAEDQPCAVTTTKSNVVASRPSQ 86

Query: 59  LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVG 118
           ++ +    +KC +DINT  D VV+PVCV  LV TL+LTNYTHS YA+YLN+S+F GAG+G
Sbjct: 87  ITKFPDYAEKCKVDINTTADAVVMPVCVPKLVQTLLLTNYTHSQYAKYLNDSRFVGAGLG 146

Query: 119 SEDDWMVVVLTTNTAAGIF-ASGAHHSVVSEIGWKRYAVCLLLGSLV 164
            EDDWMVVVLTT T AG F  SGA   V S  GW   AV +L+G L+
Sbjct: 147 KEDDWMVVVLTTGTNAGSFEGSGAGSLVGSIWGW---AVLVLVGLLI 190

Source: Cucumis melo subsp. melo

Species: Cucumis melo

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18405086|ref|NP_564669.1| Glycoprotein membrane precursor GPI-anchored [Arabidopsis thaliana] gi|12322170|gb|AAG51126.1|AC069144_23 unknown protein [Arabidopsis thaliana] gi|3776578|gb|AAC64895.1| ESTs gb|F13915 and gb|F13916 come from this gene [Arabidopsis thaliana] gi|21553603|gb|AAM62696.1| unknown [Arabidopsis thaliana] gi|28392879|gb|AAO41876.1| unknown protein [Arabidopsis thaliana] gi|28827272|gb|AAO50480.1| unknown protein [Arabidopsis thaliana] gi|332195036|gb|AEE33157.1| Glycoprotein membrane precursor GPI-anchored [Arabidopsis thaliana]

 Score =  171 bits (432), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 77/141 (54%), Positives = 105/141 (74%), Gaps = 6/141 (4%)

Query: 6   EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT------SINIGVKSPPL 59
           EDNLLQG+NS+RT+  +P   K++KA C+ADE+A+ LEDQPCT      ++  G   P L
Sbjct: 32  EDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLEDQPCTNHTTASTVTPGSVPPRL 91

Query: 60  SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
           +NY  ++ +C ID NT RDG++LPVC+ + +PTL LTNYT + YA+YLN+S++ GAGVGS
Sbjct: 92  TNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGAGVGS 151

Query: 120 EDDWMVVVLTTNTAAGIFASG 140
           E +WMVVVLTT+T  G F +G
Sbjct: 152 EKEWMVVVLTTSTPGGSFTAG 172

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443181|ref|XP_004139359.1| PREDICTED: uncharacterized GPI-anchored protein At3g06035-like [Cucumis sativus] gi|449483048|ref|XP_004156479.1| PREDICTED: uncharacterized GPI-anchored protein At3g06035-like [Cucumis sativus]

 Score =  169 bits (427), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 89/169 (52%), Positives = 118/169 (69%), Gaps = 9/169 (5%)

Query: 2   LTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPC----TSINIGVKSP 57
           ++D+EDNLLQG+NS+R +  +P L K+ KA C+A+E+A+D EDQPC    T  N+    P
Sbjct: 1   MSDEEDNLLQGLNSYRQAQNLPPLVKNAKADCVANEMADDAEDQPCAVTTTKSNVVASRP 60

Query: 58  P-LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAG 116
             ++ +    +KC +DINT  D VV+PVCV  LV TL+LTNYTHS YA+YLN+S+F GAG
Sbjct: 61  SQITKFPDYAEKCKVDINTTADAVVMPVCVPKLVQTLLLTNYTHSQYAKYLNDSRFVGAG 120

Query: 117 VGSEDDWMVVVLTTNTAAGIF-ASGAHHSVVSEIGWKRYAVCLLLGSLV 164
           +G EDDWMVVVLTT T AG F  SGA  ++ S   W   AV +L+G L+
Sbjct: 121 LGKEDDWMVVVLTTGTNAGSFEGSGAGPALGSIWVW---AVAVLVGLLI 166

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297853454|ref|XP_002894608.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297340450|gb|EFH70867.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  168 bits (426), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 76/141 (53%), Positives = 104/141 (73%), Gaps = 6/141 (4%)

Query: 6   EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT------SINIGVKSPPL 59
           EDNLLQG+NS+RT+  +P   K++KA C+ADE+A+ LEDQPCT      ++  G   P L
Sbjct: 32  EDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLEDQPCTNHTTASTVTPGSVPPRL 91

Query: 60  SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
           +NY  ++ +C ID NT RD ++LPVC+ + +PTL LTNYT + YA+YLN+S++ GAGVGS
Sbjct: 92  TNYQDILSECKIDPNTTRDALILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGAGVGS 151

Query: 120 EDDWMVVVLTTNTAAGIFASG 140
           E +WMVVVLTT+T  G F +G
Sbjct: 152 EKEWMVVVLTTSTPGGSFTAG 172

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225450985|ref|XP_002284816.1| PREDICTED: uncharacterized GPI-anchored protein At3g06035 [Vitis vinifera] gi|296088315|emb|CBI36760.3| unnamed protein product [Vitis vinifera]

 Score =  164 bits (416), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 86/166 (51%), Positives = 114/166 (68%), Gaps = 5/166 (3%)

Query: 5   DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNR 64
           ++D+LLQG+NS+RT+  +  L K+ KA CLA+E+A +LE QPCT+         L+NY  
Sbjct: 31  EDDDLLQGLNSYRTARNLSTLVKNDKAECLAEELAGELEHQPCTAAVPATPQLQLANYPS 90

Query: 65  LVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWM 124
           ++KKC IDIN  RDGV++ VCV   VPTLVLTN+T S Y++YLN+SKF G GVGSEDDW+
Sbjct: 91  ILKKCKIDINYTRDGVIMQVCVPHRVPTLVLTNFTQSHYSRYLNDSKFTGVGVGSEDDWV 150

Query: 125 VVVLTTNTAAGIFASGAHHSVVSEIGWKRYAVC---LLLGSLVYLV 167
           V VL+TN   G F SGA  + + E+G    + C   LLLG  V +V
Sbjct: 151 VAVLSTNGIEGSF-SGASRAAM-ELGLMMLSPCLVALLLGLFVAMV 194

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131028|ref|XP_002328435.1| predicted protein [Populus trichocarpa] gi|222838150|gb|EEE76515.1| predicted protein [Populus trichocarpa]

 Score =  163 bits (413), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/136 (58%), Positives = 101/136 (74%), Gaps = 3/136 (2%)

Query: 4   DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSP-PLSNY 62
           D+ED+LLQG+NS+R SL +P L KH  A CLAD++A  LED+PCTS      SP  + +Y
Sbjct: 2   DEEDDLLQGLNSYRHSLNLPALVKHTNAGCLADKIAGKLEDEPCTSAR--AASPVQIDDY 59

Query: 63  NRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDD 122
             L+ KC ID+N   +GV LPVCV  LVPTL+LTNYT + YA+Y+N S+F+GAG+G EDD
Sbjct: 60  PDLLSKCGIDVNHTNEGVALPVCVPHLVPTLLLTNYTRTPYARYINASRFSGAGLGHEDD 119

Query: 123 WMVVVLTTNTAAGIFA 138
           WMVVVLTT+T  G FA
Sbjct: 120 WMVVVLTTSTPRGDFA 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147801316|emb|CAN77026.1| hypothetical protein VITISV_015337 [Vitis vinifera]

 Score =  156 bits (395), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 82/157 (52%), Positives = 106/157 (67%), Gaps = 5/157 (3%)

Query: 11  QGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCD 70
           QG+NS+RT+  +  L K+ KA CLA+E+A +LE QPCT+         L+NY  ++KKC 
Sbjct: 39  QGLNSYRTARNLSTLVKNDKAECLAEELAGELEHQPCTAAVPATPQLQLANYPSILKKCK 98

Query: 71  IDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDWMVVVLTT 130
           IDIN  RDGV++ VCV   VPTLVLTN+T S Y++YLN+SKF G GVGSEDDW+V VL+T
Sbjct: 99  IDINYTRDGVIMQVCVPHRVPTLVLTNFTQSHYSRYLNDSKFTGVGVGSEDDWVVAVLST 158

Query: 131 NTAAGIFASGAHHSVVSEIGWKRYAVC---LLLGSLV 164
           N   G F SGA  + + E+G    + C   LLLG  V
Sbjct: 159 NGIEGSF-SGASRAAM-ELGLMMLSPCLVALLLGLFV 193

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255542608|ref|XP_002512367.1| conserved hypothetical protein [Ricinus communis] gi|223548328|gb|EEF49819.1| conserved hypothetical protein [Ricinus communis]

 Score =  155 bits (391), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 80/164 (48%), Positives = 107/164 (65%), Gaps = 1/164 (0%)

Query: 4   DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYN 63
           D+ED L+  +NS R  L +PV  K++ A CLADEVA +L D+PC   N         N  
Sbjct: 31  DEEDILITCLNSHRAYLNLPVFVKNEGADCLADEVARELGDEPCNKTNTNNPFQVDHNIT 90

Query: 64  RLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGSEDDW 123
            L+ KCDI+I   +DG VLPVCV +L P  V TNYT + +A+Y+N+S+FA  G+GSE +W
Sbjct: 91  DLISKCDINITHTKDGAVLPVCVPELEPIAVFTNYTRTHFAKYINDSRFAQVGIGSEGEW 150

Query: 124 MVVVLTTNTAAGIFASGA-HHSVVSEIGWKRYAVCLLLGSLVYL 166
           MV+VL+TNT+ G FA+ A  +S+VS IG+    V  LLG L YL
Sbjct: 151 MVIVLSTNTSRGDFAAFAGTNSLVSAIGFGHCLVSFLLGMLFYL 194

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721661|ref|NP_001236961.1| uncharacterized protein LOC100306063 precursor [Glycine max] gi|255627423|gb|ACU14056.1| unknown [Glycine max]

 Score =  154 bits (389), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 80/169 (47%), Positives = 111/169 (65%), Gaps = 7/169 (4%)

Query: 4   DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSIN----IGVKSPPL 59
           D+EDNL QGIN +R SL +  LT++  A CLA+++A+  + QPCT+      +    P  
Sbjct: 31  DEEDNLYQGINKYRASLNLKALTRNDNADCLAEKIADQFKKQPCTNTTGANTVPGTEPQF 90

Query: 60  SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
           SNY  L+ KCD+ I+  RDG V+P CV DLVP+LVLTN+T S Y+  LN++K+ G G+GS
Sbjct: 91  SNYPDLLSKCDLAISNTRDGNVMPACVPDLVPSLVLTNFTKSLYSDSLNDTKYTGIGIGS 150

Query: 120 EDDWMVVVLTTNTAAGIFA--SGAHHSVVSEIGWKRYAVCLLLGSLVYL 166
           ED+W+VVVLTTNT +G FA  S    +++S+ G   Y   L LG +  L
Sbjct: 151 EDNWIVVVLTTNTPSGTFAPYSSDGANLISKPGL-IYCSVLFLGYIFLL 198

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	167
TAIR|locus:2011025	200	AT1G54860 "AT1G54860" [Arabido	0.808	0.675	0.546	2.9e-39
TAIR|locus:505006331	200	AT3G06035 "AT3G06035" [Arabido	0.988	0.825	0.413	3.2e-33
TAIR|locus:2182162	196	AT5G19250 "AT5G19250" [Arabido	0.832	0.709	0.461	4.2e-31
TAIR|locus:2182142	189	AT5G19230 "AT5G19230" [Arabido	0.754	0.666	0.455	2.6e-24
TAIR|locus:2182152	199	AT5G19240 "AT5G19240" [Arabido	0.826	0.693	0.410	7.8e-23

TAIR|locus:2011025 AT1G54860 "AT1G54860" [Arabidopsis thaliana (taxid:3702)]

 Score = 419 (152.6 bits), Expect = 2.9e-39, P = 2.9e-39
 Identities = 77/141 (54%), Positives = 105/141 (74%)

Query:     6 EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTS------INIGVKSPPL 59
             EDNLLQG+NS+RT+  +P   K++KA C+ADE+A+ LEDQPCT+      +  G   P L
Sbjct:    32 EDNLLQGLNSYRTAQRVPPFAKNEKADCVADEIADKLEDQPCTNHTTASTVTPGSVPPRL 91

Query:    60 SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
             +NY  ++ +C ID NT RDG++LPVC+ + +PTL LTNYT + YA+YLN+S++ GAGVGS
Sbjct:    92 TNYQDILSECKIDPNTTRDGLILPVCIPNRIPTLALTNYTQTGYARYLNDSRYVGAGVGS 151

Query:   120 EDDWMVVVLTTNTAAGIFASG 140
             E +WMVVVLTT+T  G F +G
Sbjct:   152 EKEWMVVVLTTSTPGGSFTAG 172

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:505006331 AT3G06035 "AT3G06035" [Arabidopsis thaliana (taxid:3702)]

 Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
 Identities = 72/174 (41%), Positives = 107/174 (61%)

Query:     3 TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
             TD+ED LL GINS+RT+  + +L+K++ A CLADE+A+  +++PCT    S  +    P 
Sbjct:    26 TDEEDILLTGINSYRTTQNLTILSKNENAECLADEIADQFKNKPCTNDTGSATVPGTEPQ 85

Query:    59 LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVG 118
              +NY +++ KC ++++  RDG ++P CV  L   LVLTN+T S Y+  LN+SKF G G+G
Sbjct:    86 FANYPQILAKCHLNVSDTRDGSIMPACVPRLESNLVLTNFTKSQYSMSLNDSKFTGIGIG 145

Query:   119 SEDDWMVVVLTTNTAAGIFASGAHHSVVSE-----IGWKRYAVCLLLGSLVYLV 167
              EDDW+VVVLTTNT  G +++       S      IG   Y V  +  S  + +
Sbjct:   146 KEDDWIVVVLTTNTPEGSYSTATPTKQESNGFTFGIGLVSYLVIFMYSSFCFFL 199

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0010075 "regulation of meristem growth" evidence=RCA

TAIR|locus:2182162 AT5G19250 "AT5G19250" [Arabidopsis thaliana (taxid:3702)]

 Score = 342 (125.4 bits), Expect = 4.2e-31, P = 4.2e-31
 Identities = 66/143 (46%), Positives = 96/143 (67%)

Query:     4 DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPPL 59
             D+ED LL GINS+R SL +  L  +  A CLADE+A+  ++QPCT    S ++   +P  
Sbjct:    28 DEEDVLLTGINSYRASLNLTTLIHNHNAECLADEIADQFKNQPCTNTTGSASVPGTTPGF 87

Query:    60 SNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
              N   L+ KC ++    RDG +LP CV +L P+LVLTN+T S Y++ LN+SKF G G+GS
Sbjct:    88 PNLPNLLSKCRLNPTVTRDGAILPACVPNLDPSLVLTNFTMSQYSKDLNDSKFTGIGIGS 147

Query:   120 EDDWMVVVLTTNTAAGIFASGAH 142
             +D+W+VVVLTT+T  G ++  ++
Sbjct:   148 DDNWIVVVLTTSTPEGSYSPASN 170

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

TAIR|locus:2182142 AT5G19230 "AT5G19230" [Arabidopsis thaliana (taxid:3702)]

 Score = 278 (102.9 bits), Expect = 2.6e-24, P = 2.6e-24
 Identities = 62/136 (45%), Positives = 86/136 (63%)

Query:     3 TDDEDNLLQGI-NSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSN 61
             TD ED+LL  + N +RT L +  LTK++ A CLADEV + L++QPCT+ N    S P+  
Sbjct:    26 TDGEDDLLLTVFNKYRTGLNLKTLTKNENAECLADEVVDQLKNQPCTNTN---NSAPVPG 82

Query:    62 YNRLVKKCDIDINTNRDGVVLPVCV--HDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVGS 119
              N L+ KC ++    RDGV++ VC   HD  P L  +N+ +S   + LN+SK  G G+GS
Sbjct:    83 -NNLLAKCSLNTTVVRDGVIMQVCFPKHDKNPDL--SNF-NSVVLKNLNDSKITGIGIGS 138

Query:   120 EDDWMVVVLTTNTAAG 135
              D W+VV+LTTNT  G
Sbjct:   139 GDIWVVVILTTNTPEG 154

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0008150 "biological_process" evidence=ND

GO:0031225 "anchored to membrane" evidence=TAS

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:2182152 AT5G19240 "AT5G19240" [Arabidopsis thaliana (taxid:3702)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 60/146 (41%), Positives = 87/146 (59%)

Query:     3 TDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT----SINIGVKSPP 58
             TD E+ L    N +R S+ +  L K+K A CLADEV + L++QPCT    S ++    P 
Sbjct:    27 TDGENLLFTVFNQYRESVNLTNLKKNKNAECLADEVVDQLQNQPCTNTTGSASVPGTDPG 86

Query:    59 LSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSSYAQYLNNSKFAGAGVG 118
             + N+  L+ KC ++ N  RDG++L VC      T  L+++ +    + LN+SKF GAGVG
Sbjct:    87 IPNFPNLLAKCRLNTNVTRDGLILQVCAPKHHSTPDLSSFANV-LTKNLNDSKFTGAGVG 145

Query:   119 SEDD--WMVVVLTTNTAAGIFA-SGA 141
              + D  W+V VLTTNT  G ++ SGA
Sbjct:   146 IDSDGIWLVTVLTTNTPGGSYSNSGA 171


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.134   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      167       167   0.00075  108 3  11 22  0.40    32
                                                     30  0.46    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  5
  No. of states in DFA:  604 (64 KB)
  Total size of DFA:  157 KB (2093 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.27u 0.13s 15.40t   Elapsed:  00:00:00
  Total cpu time:  15.27u 0.13s 15.40t   Elapsed:  00:00:00
  Start:  Fri May 10 07:48:18 2013   End:  Fri May 10 07:48:18 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006569 "tryptophan catabolic process" evidence=RCA

GO:0009684 "indoleacetic acid biosynthetic process" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT1G54860	unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- anchored to membrane; EXPRESSED IN- leaf whorl, petal, sepal, flower; EXPRESSED DURING- 4 anthesis, petal differentiation and expansion stage; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT5G19250.1); Has 42 Blast hits to 41 proteins in 9 species- Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 0 (source- NCBI BLink). (200 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	AT1G18280	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein; protease inhibitor [...] (180 aa)				•			•		0.863
	AT3G18590	plastocyanin-like domain-containing protein; plastocyanin-like domain-containing protein; FUNCT [...] (188 aa)							•		0.782
	AT1G48940	plastocyanin-like domain-containing protein; plastocyanin-like domain-containing protein; FUNCT [...] (177 aa)							•		0.782
	AT1G64760	glycosyl hydrolase family 17 protein; glycosyl hydrolase family 17 protein; FUNCTIONS IN- catio [...] (481 aa)							•		0.782
	AT2G42940	DNA-binding family protein; DNA-binding family protein; FUNCTIONS IN- DNA binding; INVOLVED IN- [...] (257 aa)							•		0.677
	AT5G64790	glycosyl hydrolase family 17 protein; glycosyl hydrolase family 17 protein; FUNCTIONS IN- catio [...] (485 aa)				•			•		0.675
	AT1G33430	galactosyltransferase family protein; galactosyltransferase family protein; FUNCTIONS IN- trans [...] (395 aa)							•		0.659
	FLA3	FLA3 (FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 3 PRECURSOR); FASCICLIN-LIKE ARABINOGALACTAN PROTE [...] (280 aa)							•		0.595
	SHT	SHT (SPERMIDINE HYDROXYCINNAMOYL TRANSFERASE); N-acyltransferase/ hydroxycinnamoyltransferase/ [...] (451 aa)							•		0.575
	SBT5.4	SBT5.4; identical protein binding / serine-type endopeptidase; SBT5.4; FUNCTIONS IN- identical [...] (778 aa)							•		0.567

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	167
cd05379	122	SCP_bacterial SCP_bacterial: SCP-like extracellula	97.59
TIGR02909	127	spore_YkwD uncharacterized protein, YkwD family. M	97.56
PF00188	124	CAP: Cysteine-rich secretory protein family; Inter	92.45
cd05381	136	SCP_PR-1_like SCP_PR-1_like: SCP-like extracellula	86.8
cd05384	129	SCP_PRY1_like SCP_PRY1_like: SCP-like extracellula	86.26
cd00168	122	SCP SCP: SCP-like extracellular protein domain, fo	84.79
PF14412	109	AHH: A nuclease family of the HNH/ENDO VII superfa	80.45
cd05382	132	SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracel	80.07

>cd05379 SCP_bacterial SCP_bacterial: SCP-like extracellular protein domain, as found in bacteria and archaea

Probab=97.59  E-value=7.9e-05  Score=52.32  Aligned_cols=42  Identities=29%  Similarity=0.352  Sum_probs=37.2

Q ss_pred             hHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCcc
Q 031010            7 DNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCT   48 (167)
Q Consensus         7 d~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt   48 (167)
                      ..+++.||.||+..++|+|+.+++-.+.|.+-|++.....+.
T Consensus         2 ~~~~~~iN~~R~~~gl~pl~~~~~l~~~A~~~a~~~~~~~~~   43 (122)
T cd05379           2 QEALELINAYRAQNGLPPLTWDPALAAAAQAHARDMAANGYF   43 (122)
T ss_pred             hHHHHHHHHHHHHcCCCCCccChHHHHHHHHHHHHHHhcCcc
Confidence            568999999999999999999999999999999988665553

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. Little is known about the biological roles of the bacterial and archaeal SCP domains.

>TIGR02909 spore_YkwD uncharacterized protein, YkwD family

Probab=97.56  E-value=0.00025  Score=53.02  Aligned_cols=109  Identities=22%  Similarity=0.226  Sum_probs=65.3

Q ss_pred             CCchhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhccccccccCCcee
Q 031010            2 LTDDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVV   81 (167)
Q Consensus         2 ~~d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC~inin~T~DG~i   81 (167)
                      |++.|+++|+-||.||+..+||+|+-|+.-.-.|.+=|+++..+.--..++   | ..-..-+.+++..++-.  .=|-.
T Consensus         1 ~~~~e~~~l~~iN~~R~~~Gl~pL~~~~~L~~~A~~hA~~ma~~~~~~H~~---~-~~~~~~~r~~~~g~~~~--~~gEN   74 (127)
T TIGR02909         1 LTAEEKRVVELVNAERAKNGLKPLKADPELSKVARLKSEDMRDKNYFSHTS---P-TYGSPFDMMKKFGISYR--MAGEN   74 (127)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHHhCCcccccC---C-CCCCHHHHHHHcCCCcc--cceee
Confidence            567899999999999999999999999999888887777775433222221   1 11111245555443211  11111


Q ss_pred             eeeeccCCCccccccccchh--hhhhccc-CCCccccccc
Q 031010           82 LPVCVHDLVPTLVLTNYTHS--SYAQYLN-NSKFAGAGVG  118 (167)
Q Consensus        82 mPvCVP~l~~~~vltNyT~S--~y~~yLN-dSkytg~GiG  118 (167)
                      +-.  -...+..++..+-+|  ++..-|+ +.+..|||+.
T Consensus        75 i~~--g~~~~~~~v~~W~~S~gH~~nil~~~~~~~Gvg~~  112 (127)
T TIGR02909        75 IAY--GNSTVEAVHNAWMNSPGHRANILNPNYTEIGVGYV  112 (127)
T ss_pred             eec--cCCCHHHHHHHHHcCHhHHHHHcCCCcCeEeEEEE
Confidence            110  011334566777666  5666665 4566666664

Members of this protein family represent a subset of those belonging to Pfam family pfam00188 (SCP-like extracellular protein). Based on currently cuttoffs for this model, all member proteins are found in Bacteria capable of endospore formation. Members include a named but uncharacterized protein, YkwD of Bacillus subtilis. Only the C-terminal region is well-conserved and is included in the seed alignment for this model. Three members of this family have an N-terminal domain homologous to the spore coat assembly protein SafA.

>PF00188 CAP: Cysteine-rich secretory protein family; InterPro: IPR014044 The cysteine-rich secretory proteins, antigen 5, and pathogenesis-related 1 proteins (CAP) superfamily proteins are found in a wide range of organisms, including prokaryotes [] and non-vertebrate eukaryotes [], The nine subfamilies of the mammalian CAP superfamily include: the human glioma pathogenesis-related 1 (GLIPR1), Golgi associated pathogenesis related-1 (GAPR1) proteins, peptidase inhibitor 15 (PI15), peptidase inhibitor 16 (PI16), cysteine-rich secretory proteins (CRISPs), CRISP LCCL domain containing 1 (CRISPLD1), CRISP LCCL domain containing 2 (CRISPLD2), mannose receptor like and the R3H domain containing like proteins

Probab=92.45  E-value=0.021  Score=37.82  Aligned_cols=43  Identities=23%  Similarity=0.204  Sum_probs=30.5

Q ss_pred             hhhhhhhh-hhcCCCccccCCCCcccHHHHHHHcCCCCccccCC
Q 031010           10 LQGINSFR-TSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINI   52 (167)
Q Consensus        10 l~~iN~YR-~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~   52 (167)
                      |+-+|.|| ...++|+|+-++...=.|.+-|++....++.....
T Consensus         1 L~~~N~~R~~~~~~~~L~~d~~L~~~A~~~a~~~~~~~~~~~~~   44 (124)
T PF00188_consen    1 LDLHNEYRSAANGLPPLKWDPELAKAAQAHAKYCANSNSLSHDS   44 (124)
T ss_dssp             HHHHHHHHHBSSTBB--EE-HHHHHHHHHHHTTTCSSEETTEES
T ss_pred             CHHHHHHHHHhCCCCCCeeCHHHHHHHHHhhHHhhhhccccccc
Confidence            67899999 88999999988887777888888876644444444

Members are most often secreted and have an extracellular endocrine or paracrine function and are involved in processes including the regulation of extracellular matrix and branching morphogenesis, potentially as either proteases or protease inhibitors; in ion channel regulation in fertility; as tumour suppressor or pro-oncogenic genes in tissues including the prostate; and in cell-cell adhesion during fertilisation. The overall protein structural conservation within the CAP superfamily results in fundamentally similar functions for the CAP domain in all members, yet the diversity outside of this core region dramatically alters the target specificity and, thus, the biological consequences []. The Ca++-chelating function [] would fit with the various signalling processes (e.g. the CRISP proteins) that members of this family are involved in, and also the sequence and structural evidence of a conserved pocket containing two histidines and a glutamate. It also may explain how Q91055 from SWISSPROT blocks the Ca++ transporting ryanodine receptors. This entry represents the CAP domain common to all members of the CAP superfamily. The CAP domain forms a unique 3 layer alpha-beta-alpha fold with some, though not all, of the structural elements found in proteases [].; PDB: 3U3N_C 3U3U_C 3U3L_C 1U53_A 1RC9_A 1SMB_A 3NT8_B 1QNX_A 1WVR_A 3Q2U_A ....

>cd05381 SCP_PR-1_like SCP_PR-1_like: SCP-like extracellular protein domain, PR-1 like subfamily

Probab=86.80  E-value=0.46  Score=35.05  Aligned_cols=46  Identities=22%  Similarity=0.387  Sum_probs=38.7

Q ss_pred             hhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCC
Q 031010            6 EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINI   52 (167)
Q Consensus         6 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~   52 (167)
                      ++++|+..|.||...++|+|+=++.-.=.|.+-|+++. ..|.....
T Consensus         1 ~~~il~~hN~~R~~~~~~~L~Wd~~La~~A~~~a~~~~-~~c~~~~~   46 (136)
T cd05381           1 PQDFLDAHNAARAAVGVPPLKWDDTLAAYAQRYANQRR-GDCALVHS   46 (136)
T ss_pred             ChHHHHHHHHHHHhcCCCcceECHHHHHHHHHHHHHhc-CCCCcccC
Confidence            46799999999999999999999888888888888886 57765443

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. It also includes CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases.

>cd05384 SCP_PRY1_like SCP_PRY1_like: SCP-like extracellular protein domain, PRY1-like sub-family restricted to fungi

Probab=86.26  E-value=0.49  Score=34.64  Aligned_cols=38  Identities=26%  Similarity=0.235  Sum_probs=33.9

Q ss_pred             hhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHc
Q 031010            5 DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDL   42 (167)
Q Consensus         5 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~   42 (167)
                      -+..+|+.+|.||...++|+|+=+..-+-.|..-|++.
T Consensus         2 ~~~~iL~~hN~~R~~~g~~~L~w~~~La~~A~~~a~~c   39 (129)
T cd05384           2 FASSILDAHNSKRALHGVQPLTWNNTLAEYAQDYANSY   39 (129)
T ss_pred             HHHHHHHHHHHHHHHcCCCcCccCHHHHHHHHHHHHHh
Confidence            46789999999999999999999998888888888875

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. PRY1 is a yeast protein that is up-regulated in core ESCRT mutants. This PRY1-like group also contains fruiting body proteins SC7/14 from Schizophyllum commune.

>cd00168 SCP SCP: SCP-like extracellular protein domain, found in eukaryotes and prokaryotes

Probab=84.79  E-value=0.51  Score=34.00  Aligned_cols=36  Identities=19%  Similarity=0.255  Sum_probs=31.9

Q ss_pred             hHHhhhhhhhhhhc-CCCccccCCCCcccHHHHHHHc
Q 031010            7 DNLLQGINSFRTSL-GIPVLTKHKKAACLADEVAEDL   42 (167)
Q Consensus         7 d~Ll~~iN~YR~sl-nLp~L~kN~kA~ClA~eiA~~~   42 (167)
                      +++|+-+|.||... ++|+|.=+...+=.|.+-|++.
T Consensus         2 ~~il~~hN~~R~~~a~~~~L~wd~~La~~A~~~a~~c   38 (122)
T cd00168           2 QEVVRLHNSYRAKVNGMLPMSWDAELAKTAQNYANRC   38 (122)
T ss_pred             cHHHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHhhc
Confidence            46899999999999 9999999988888888888775

This family includes plant pathogenesis-related protein 1 (PR-1), which accumulates after infections with pathogens, and may act as an anti-fungal agent or be involved in cell wall loosening. This family also includes CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. Roles for CRISP, in response to pathogens, fertilization, and sperm maturation have been proposed. One member, Tex31 from the venom duct of Conus textile, has been shown to possess proteolytic activity sensitive to serine protease inhibitors. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. SCP has also been proposed to be a Ca++ chelating serine protease. The Ca++-chelating function would fit with various signaling processes that members of this family, such as

>PF14412 AHH: A nuclease family of the HNH/ENDO VII superfamily with conserved AHH

Probab=80.45  E-value=0.96  Score=32.98  Aligned_cols=49  Identities=27%  Similarity=0.455  Sum_probs=39.4

Q ss_pred             CCCChhHhhhhccccccccCCceeeeeeccCCCccccccccchhh-hhhcccC
Q 031010           58 PLSNYNRLVKKCDIDINTNRDGVVLPVCVHDLVPTLVLTNYTHSS-YAQYLNN  109 (167)
Q Consensus        58 q~pnyp~~l~kC~inin~T~DG~imPvCVP~l~~~~vltNyT~S~-y~~yLNd  109 (167)
                      ..+...+.|.++.+++|...+|+.||..-.   +....+.-.|+. |.+++++
T Consensus        29 ~~~~~~~~l~~~g~~in~~~Ngv~Lp~~~~---~~~~~H~g~H~~~Y~~~V~~   78 (109)
T PF14412_consen   29 RSPKLRKILEKYGIDINDPENGVWLPNSEK---PGRPPHRGRHPNEYNKYVRE   78 (109)
T ss_pred             ccHHHHHHHHHcCCCcCCccceeeeeccCC---CCcCCcCCCCcHHHHHHHHH
Confidence            346677899999999999999999997665   666677766665 8888764

>cd05382 SCP_GAPR-1_like SCP_GAPR-1_like: SCP-like extracellular protein domain, golgi-associated plant pathogenesis related protein (GAPR)-like sub-family

Probab=80.07  E-value=1.3  Score=32.16  Aligned_cols=39  Identities=31%  Similarity=0.361  Sum_probs=32.2

Q ss_pred             hhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCC
Q 031010            6 EDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLED   44 (167)
Q Consensus         6 Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~   44 (167)
                      +.++|+-+|.||...++|+|+=|+.-.=.|.+-|++...
T Consensus         3 ~~~iL~~hN~~R~~~g~~~L~wd~~La~~A~~~a~~c~~   41 (132)
T cd05382           3 QKECLDAHNEYRALHGAPPLKLDKELAKEAQKWAEKLAS   41 (132)
T ss_pred             HHHHHHHHHHHHHHcCCCcCeeCHHHHHHHHHHHHHhhh
Confidence            567999999999999999999887766677777776653

The wider family of SCP containing proteins includes plant pathogenesis-related protein 1 (PR-1), CRISPs, mammalian cysteine-rich secretory proteins, which combine SCP with a C-terminal cysteine rich domain, and allergen 5 from vespid venom. It has been proposed that SCP domains may function as endopeptidases. The human GAPR-1 protein has been reported to dimerize, and such a dimer may form an active site containing a catalytic triad. GAPR-1 and GLIPR-2 appear to be synonyms.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	167
4ifa_A	339	Extracellular protein containing A SCP domain; vac	93.96
4h0a_A	323	Uncharacterized protein; CAP protein family, cyste	93.02
1cfe_A	135	Pathogenesis-related protein P14A; PR-1 proteins,	88.46

>4ifa_A Extracellular protein containing A SCP domain; vaccine candi virulence, pathogenesis, center for structural genomics of infectious diseases; HET: MSE; 1.50A {Bacillus anthracis}

Probab=93.96  E-value=0.016  Score=50.18  Aligned_cols=117  Identities=18%  Similarity=0.250  Sum_probs=65.8

Q ss_pred             hhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhccccccccCCceeeee
Q 031010            5 DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPV   84 (167)
Q Consensus         5 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC~inin~T~DG~imPv   84 (167)
                      .|.++|.-+|.||+..+||+|+-|+...-.|..=|+++-..-+-..+++.    -.+..+.+++..+.....  |--+=.
T Consensus       220 ~e~~vl~lvN~~Ra~~Gl~pL~~d~~L~~aAq~hA~dMa~~~~fsH~~~~----G~~~~~R~~~~G~~~~~~--GENIA~  293 (339)
T 4ifa_A          220 NMQQIFDLTNIIRSRHNLPLLAWDQQTADVAIGHSKDMKDNNYFSHDSPT----LGTLGDRLQRGKVGFQLA--GENIAA  293 (339)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHHHHTCCSSSBTT----TBCHHHHHHHTTCCCSEE--EEEEEE
T ss_pred             HHHHHHHHHHHHHHHcCCCCCccCHHHHHHHHHHHHHHhhcCCeecCCCC----CCCHHHHHHHcCCCcCce--eEEEEE
Confidence            47899999999999999999999999888887777765433222222211    112335555554321110  000000


Q ss_pred             eccCCCccccccccchh--hhhhcccCCCcccccccCCCceEEEEEec
Q 031010           85 CVHDLVPTLVLTNYTHS--SYAQYLNNSKFAGAGVGSEDDWMVVVLTT  130 (167)
Q Consensus        85 CVP~l~~~~vltNyT~S--~y~~yLNdSkytg~GiGsed~WmVvVLtT  130 (167)
                      .-  ..+..++..+-.|  +.+. |=+..|+-+|||-...|.+.++.+
T Consensus       294 G~--~s~~~av~~WmnSpGHr~N-IL~~~~t~iGvGv~~~YwtQ~F~~  338 (339)
T 4ifa_A          294 QH--SDGVAALQGWLNSEGHRKN-LLNEQFTGLGVGVYDKFYTQNFIR  338 (339)
T ss_dssp             SC--SSHHHHHHHHHTSHHHHHH-HTCTTCCEEEEEEETTEEEEEEEE
T ss_pred             eC--CCHHHHHHHHhCCHhHHHH-HhCCCCCEEEEEEEecEEEEEEec
Confidence            00  1122334444445  4444 445677777777666655666553

>4h0a_A Uncharacterized protein; CAP protein family, cysteine-rich secretory proteins, struct genomics, joint center for structural genomics; 1.90A {Staphylococcus aureus subsp}

Probab=93.02  E-value=0.026  Score=48.19  Aligned_cols=113  Identities=15%  Similarity=0.082  Sum_probs=64.6

Q ss_pred             hhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCccccCCCCCCCCCCChhHhhhhccccccccCCceeeee
Q 031010            5 DEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSINIGVKSPPLSNYNRLVKKCDIDINTNRDGVVLPV   84 (167)
Q Consensus         5 ~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~t~g~~~~q~pnyp~~l~kC~inin~T~DG~imPv   84 (167)
                      +|.++|+-||.||+..+||+|+-|+...-.|..=|++....--. .++   + .-.+..+.+++..+.-.....=+-.  
T Consensus       205 ~e~~il~liN~~R~~~GL~pL~~d~~L~~aA~~ha~dma~~~~~-h~~---~-~g~~~~~R~~~~g~~~~~~gENIA~--  277 (323)
T 4h0a_A          205 QLISLYEVTNEMRKLKGLKPLKINSDLAHIASNNLYEATSNGSD-SVE---F-TEDALRGQLDKNHVTYKTTAQNVGY--  277 (323)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHHHHHHTC-------C---C-CHHHHHHHHHHTTCCCSEEEEEEEE--
T ss_pred             HHHHHHHHHHHHHHHcCCcccCccHhHHHHHHHHHHHHhhCCCC-CcC---C-CCCCHHHHHHHcCCCcCeeeeEEec--
Confidence            45789999999999999999999999988988888887433211 111   1 1112345566555432211100000  


Q ss_pred             eccCCCccccccccchh-hhhhcccCCCcccccccCCCceEEE
Q 031010           85 CVHDLVPTLVLTNYTHS-SYAQYLNNSKFAGAGVGSEDDWMVV  126 (167)
Q Consensus        85 CVP~l~~~~vltNyT~S-~y~~yLNdSkytg~GiGsed~WmVv  126 (167)
                        =-..+.-++..+-.| ...+.|=|.+|+-+|||-..++.+-
T Consensus       278 --g~~~~~~vv~~WmnSpgHR~NiL~~~~t~iGvGv~~~YwTQ  318 (323)
T 4h0a_A          278 --AFNDVPTLIHSWMNSDIHRSRLLNSKYDEMGGDVMRDYYSL  318 (323)
T ss_dssp             --SCCSHHHHHHHHHTSHHHHHHHTCSSCCEEEEEEETTEEEE
T ss_pred             --CCCCHHHHHHHHHcCHHHHHHHcCCCCCEEEEEEEcCEEEE
Confidence              001233355555556 2444455678888888865554333

>1cfe_A Pathogenesis-related protein P14A; PR-1 proteins, plant defense; NMR {Solanum lycopersicum} SCOP: d.111.1.1

Probab=88.46  E-value=0.22  Score=36.43  Aligned_cols=46  Identities=20%  Similarity=0.276  Sum_probs=38.7

Q ss_pred             chhhHHhhhhhhhhhhcCCCccccCCCCcccHHHHHHHcCCCCcccc
Q 031010            4 DDEDNLLQGINSFRTSLGIPVLTKHKKAACLADEVAEDLEDQPCTSI   50 (167)
Q Consensus         4 d~Ed~Ll~~iN~YR~slnLp~L~kN~kA~ClA~eiA~~~~~qpCt~~   50 (167)
                      +.++++|+-.|.||...++|+|+=++.-.=.|.+-|+++.+ -|.-.
T Consensus         2 ~~~~~iL~~HN~~R~~~~~~~L~Wd~~La~~Aq~~A~~~a~-~c~~~   47 (135)
T 1cfe_A            2 NSPQDYLAVHNDARAQVGVGPMSWDANLASRAQNYANSRAG-DCNLI   47 (135)
T ss_dssp             CSHHHHHHHHHHHHHHTTCCCCEECSHHHHHHHHHHHHHTT-TCCSC
T ss_pred             cHHHHHHHHHHHHHHHcCCCccCcCHHHHHHHHHHHHHHhc-CCCcc
Confidence            46788999999999999999999999988888888887753 36543

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00