Citrus Sinensis ID: 032245

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140----
Protein Sequence
MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI
Secondary Structure (PSIPRED)
cccccHHHHccccccccccccccccccEEEcccccccccccccccEEEEEEccEEEEEEcccccccccccEEEcccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccEEEEEEcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccEEcccccccccccEEEEccccccccccccccEEEEEEEcccEEEEEHHHcccccccccEccccccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHEccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MASLATIAAvqpatikglggsslagtkltvkptrqsfrpksfkAGAVVAKygdksvyfdledlgnttgqwdlygsdapspynslqskffetfaapftkRGLLLKFLILGGGSTLAYFsatasgdilpikkgpqlppklgprgki
Flexible Loop (DISEMBL)
MASLATiaavqpatikglggsslagtkltvkptrqsfrpksfkagavVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATAsgdilpikkgpqlppklgprgki
Low Complexity Region (SEG)
MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRglllkflilgggSTLAYFSATASGDIlpikkgpqlppklgprgkI
Disordered region (IsUnstruct)
*****************************************FKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILP*****************
Disordered Region (DISOPRED)
****ATIAAVQPATIKGLGGSSLAG*************************YGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILP*****************
Disordered Region (DISEMBL)
MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPP********
Disordered Region (DISPRO)
***LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLP*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	144	2.2.26 [Sep-21-2011]
Q9SUI6	145	Photosystem I reaction ce	yes	no	1.0	0.993	0.834	6e-64
Q9SUI7	145	Photosystem I reaction ce	no	no	1.0	0.993	0.820	1e-63
O04006	145	Photosystem I reaction ce	N/A	no	1.0	0.993	0.827	2e-63
P22179	144	Photosystem I reaction ce	N/A	no	1.0	1.0	0.798	6e-63
P20143	143	Photosystem I reaction ce	N/A	no	0.979	0.986	0.706	6e-53
Q0DG05	142	Photosystem I reaction ce	yes	no	0.951	0.964	0.719	6e-46
A2Y7D9	142	Photosystem I reaction ce	N/A	no	0.951	0.964	0.719	6e-46
O65101	142	Photosystem I reaction ce	N/A	no	0.979	0.992	0.751	2e-39
P13352	130	Photosystem I reaction ce	N/A	no	0.743	0.823	0.388	8e-14
P20121	36	Photosystem I reaction ce	N/A	no	0.25	1.0	0.916	3e-13

>sp|Q9SUI6|PSAH2_ARATH Photosystem I reaction center subunit VI-2, chloroplastic OS=Arabidopsis thaliana GN=PSAH2 PE=2 SV=1

 Score =  242 bits (617), Expect = 6e-64,   Method: Compositional matrix adjust.
 Identities = 121/145 (83%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 1   MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
           MAS ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query: 60  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
            ++GD+LPIK+GPQ PPKLGPRGK+
Sbjct: 121 NSTGDVLPIKRGPQEPPKLGPRGKL 145

Possible role could be the docking of the LHC I antenna complex to the core complex.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9SUI7|PSAH1_ARATH Photosystem I reaction center subunit VI-1, chloroplastic OS=Arabidopsis thaliana GN=PSAH1 PE=2 SV=1

 Score =  241 bits (614), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 119/145 (82%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 1   MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
           MASLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFD
Sbjct: 1   MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query: 60  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
           LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
           T++G++LPIK+GPQ PPKLGPRGK+
Sbjct: 121 TSTGEVLPIKRGPQEPPKLGPRGKL 145

Possible role could be the docking of the LHC I antenna complex to the core complex.

Arabidopsis thaliana (taxid: 3702)

>sp|O04006|PSAH_BRARA Photosystem I reaction center subunit VI, chloroplastic OS=Brassica rapa GN=PSAH PE=2 SV=1

 Score =  240 bits (612), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 120/145 (82%), Positives = 132/145 (91%), Gaps = 1/145 (0%)

Query: 1   MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
           MAS ATIAAVQP + +KGLGGSSL G KL +KP+RQSF+PKS +AGAVVAKYGDKSVYFD
Sbjct: 1   MASFATIAAVQPYSAVKGLGGSSLTGAKLFIKPSRQSFKPKSTRAGAVVAKYGDKSVYFD 60

Query: 60  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
           LEDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
           +++GD+LPIK+GPQ  PKLGPRGK+
Sbjct: 121 SSTGDVLPIKRGPQEKPKLGPRGKL 145

Possible role could be the docking of the LHC I antenna complex to the core complex.

Brassica rapa (taxid: 51350)

>sp|P22179|PSAH_SPIOL Photosystem I reaction center subunit VI, chloroplastic OS=Spinacia oleracea GN=PSAH PE=1 SV=1

 Score =  238 bits (608), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 115/144 (79%), Positives = 128/144 (88%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           A  D+LPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

Possible role could be the docking of the LHC I antenna complex to the core complex.

Spinacia oleracea (taxid: 3562)

>sp|P20143|PSAH_HORVU Photosystem I reaction center subunit VI, chloroplastic OS=Hordeum vulgare GN=PSAH PE=1 SV=1

 Score =  205 bits (522), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 101/143 (70%), Positives = 120/143 (83%), Gaps = 2/143 (1%)

Query: 4   LATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKA--GAVVAKYGDKSVYFDLE 61
           +A++ AVQPA +KGL GSS++G KL V+P+  +    + +A   AVVAKYG+KSVYFDL+
Sbjct: 1   MASLVAVQPAAVKGLSGSSISGRKLAVRPSSAAVSRSTRRARGAAVVAKYGEKSVYFDLD 60

Query: 62  DLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATA 121
           D+ NTTGQWDLYGSDAPSPYN LQSKFF TFAAPFTKRGLLLKFL++GGGS +AY SA+A
Sbjct: 61  DIANTTGQWDLYGSDAPSPYNGLQSKFFNTFAAPFTKRGLLLKFLLIGGGSLVAYVSASA 120

Query: 122 SGDILPIKKGPQLPPKLGPRGKI 144
           S D+LPIKKGPQLPP  GPRGKI
Sbjct: 121 SPDLLPIKKGPQLPPTPGPRGKI 143

Possible role could be the docking of the LHC I antenna complex to the core complex.

Hordeum vulgare (taxid: 4513)

>sp|Q0DG05|PSAH_ORYSJ Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. japonica GN=PSAH PE=2 SV=1

 Score =  182 bits (462), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 122/146 (83%), Gaps = 9/146 (6%)

Query: 4   LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYF 58
           +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYF
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYF 56

Query: 59  DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS 118
           DLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LGGGS +AY S
Sbjct: 57  DLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVS 116

Query: 119 ATASGDILPIKKGPQLPPKLGPRGKI 144
           A+AS D+LPIKKGPQLPP  GPRGKI
Sbjct: 117 ASASPDLLPIKKGPQLPPTPGPRGKI 142

Possible role could be the docking of the LHC I antenna complex to the core complex.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2Y7D9|PSAH_ORYSI Photosystem I reaction center subunit VI, chloroplastic OS=Oryza sativa subsp. indica GN=PSAH PE=2 SV=1

 Score =  182 bits (462), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 105/146 (71%), Positives = 122/146 (83%), Gaps = 9/146 (6%)

Query: 4   LATIAAVQPATIKGLGGSSLAGTKLTVKPT-----RQSFRPKSFKAGAVVAKYGDKSVYF 58
           +A++ AVQP  +KGL GSS++G KL V+P+     R + RP++    AVVAKYG+KSVYF
Sbjct: 1   MASLVAVQPVAVKGLAGSSISGRKLAVRPSPRALCRTTRRPRA----AVVAKYGEKSVYF 56

Query: 59  DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS 118
           DLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFA PFTKRGLLLKFL+LGGGS +AY S
Sbjct: 57  DLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAGPFTKRGLLLKFLLLGGGSLVAYVS 116

Query: 119 ATASGDILPIKKGPQLPPKLGPRGKI 144
           A+AS D+LPIKKGPQLPP  GPRGKI
Sbjct: 117 ASASPDLLPIKKGPQLPPTPGPRGKI 142

Possible role could be the docking of the LHC I antenna complex to the core complex.

Oryza sativa subsp. indica (taxid: 39946)

>sp|O65101|PSAH_MAIZE Photosystem I reaction center subunit VI, chloroplastic OS=Zea mays GN=PSAH PE=2 SV=1

 Score =  160 bits (406), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 109/145 (75%), Positives = 124/145 (85%), Gaps = 4/145 (2%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTV-KPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
           MASLA ++ V+P  IKGL GSS++G KL V +P+ +S R    +A AVVAKYGDKSVYFD
Sbjct: 1   MASLAAVS-VKPVAIKGLAGSSISGRKLAVARPSARSIRRP--RAAAVVAKYGDKSVYFD 57

Query: 60  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
           L+D+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL+LGGGS LAY SA
Sbjct: 58  LDDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLLLGGGSLLAYVSA 117

Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
           +AS D+LPIKKGPQ PP+ GPRGKI
Sbjct: 118 SASPDLLPIKKGPQEPPQPGPRGKI 142

Possible role could be the docking of the LHC I antenna complex to the core complex.

Zea mays (taxid: 4577)

>sp|P13352|PSAH_CHLRE Photosystem I reaction center subunit VI, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAH PE=2 SV=1

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/108 (38%), Positives = 57/108 (52%), Gaps = 1/108 (0%)

Query: 38  RPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFT 97
           R  + KA  V AKYG+ S YFDL+D+ NTTG WD+YG D    Y   Q+KFF       +
Sbjct: 19  RVAARKAVRVSAKYGENSRYFDLQDMENTTGSWDMYGVDEKKRYPDNQAKFFTQATDIIS 78

Query: 98  KRGLLLKFLILGGGSTLAYFSATASGDI-LPIKKGPQLPPKLGPRGKI 144
           +R  L   + L G + +  +    + D  LPI KGPQ   + G  G +
Sbjct: 79  RRESLRALVALSGIAAIVTYGLKGAKDADLPITKGPQTTGENGKGGSV 126

Possible role could be the docking of the LHC I antenna complex to the core complex.

Chlamydomonas reinhardtii (taxid: 3055)

>sp|P20121|PSAH_PEA Photosystem I reaction center subunit VI (Fragment) OS=Pisum sativum GN=PSAH PE=1 SV=1

 Score = 73.9 bits (180), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/36 (91%), Positives = 35/36 (97%)

Query: 50 KYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQ 85
          KYGDKSVYFDLED+GNTTGQWDLYGSDAPSPY+ LQ
Sbjct: 1  KYGDKSVYFDLEDIGNTTGQWDLYGSDAPSPYSXLQ 36

Possible role could be the docking of the LHC I antenna complex to the core complex.

Pisum sativum (taxid: 3888)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
224073967	144	hypothetical protein POPTRDRAFT_712066 [	1.0	1.0	0.923	4e-69
351726538	144	uncharacterized protein LOC100499832 [Gl	1.0	1.0	0.895	2e-67
255549948	144	Photosystem I reaction center subunit VI	1.0	1.0	0.895	4e-67
388522817	144	unknown [Lotus japonicus]	1.0	1.0	0.881	2e-66
359806751	144	uncharacterized protein LOC100811201 [Gl	1.0	1.0	0.875	3e-66
115187527	144	photosystem I psaH protein [Arachis hypo	1.0	1.0	0.861	8e-65
358248194	139	uncharacterized protein LOC100776789 [Gl	0.965	1.0	0.868	8e-65
407353	145	PSI-H precursor [Nicotiana sylvestris]	1.0	0.993	0.868	4e-64
110631498	161	photosystem I subunit H [Pelargonium x h	1.0	0.894	0.849	1e-63
357454927	147	Photosystem I reaction center subunit VI	1.0	0.979	0.843	8e-63

>gi|224073967|ref|XP_002304206.1| hypothetical protein POPTRDRAFT_712066 [Populus trichocarpa] gi|118487059|gb|ABK95360.1| unknown [Populus trichocarpa] gi|222841638|gb|EEE79185.1| hypothetical protein POPTRDRAFT_712066 [Populus trichocarpa]

 Score =  265 bits (678), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 133/144 (92%), Positives = 138/144 (95%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT AAVQPATIKGLGGSSL+GTKL VKP+RQ  RPKS ++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLATFAAVQPATIKGLGGSSLSGTKLHVKPSRQGLRPKSLRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           ASGDILPIKKGPQLPPKLGPRGK+
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKL 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726538|ref|NP_001236618.1| uncharacterized protein LOC100499832 [Glycine max] gi|255627007|gb|ACU13848.1| unknown [Glycine max]

 Score =  259 bits (663), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 129/144 (89%), Positives = 137/144 (95%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQPATI GL GSSL+GTKL+ KP+R S + K+F++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPATINGLAGSSLSGTKLSFKPSRHSVKSKNFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           ASGDILPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255549948|ref|XP_002516025.1| Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis] gi|223544930|gb|EEF46445.1| Photosystem I reaction center subunit VI, chloroplast precursor, putative [Ricinus communis]

 Score =  258 bits (660), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 129/144 (89%), Positives = 135/144 (93%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT AAVQPAT+KGLGGSSL GTKL VKP+RQS RPK+ + GAV AKYGDKSVYFDL
Sbjct: 1   MASLATFAAVQPATVKGLGGSSLTGTKLHVKPSRQSLRPKNRRNGAVEAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGSTLAY SAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYLSAT 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           A+GD+LPIKKGPQLPPKLGPRGKI
Sbjct: 121 ATGDVLPIKKGPQLPPKLGPRGKI 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388522817|gb|AFK49470.1| unknown [Lotus japonicus]

 Score =  256 bits (654), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 127/144 (88%), Positives = 135/144 (93%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQPA I GL GSSL GTKL+ K +RQS + K+F+ GAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPAAINGLAGSSLNGTKLSFKSSRQSIKSKNFRNGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           ED+GNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAY+SAT
Sbjct: 61  EDIGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYYSAT 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           ASGDILPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806751|ref|NP_001241299.1| uncharacterized protein LOC100811201 [Glycine max] gi|255626535|gb|ACU13612.1| unknown [Glycine max]

 Score =  255 bits (652), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 126/144 (87%), Positives = 136/144 (94%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQPA + GL GSSL+GTKL+ KP+R + + K+F++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPAALNGLAGSSLSGTKLSFKPSRHTVKSKNFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT
Sbjct: 61  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           ASGDILPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115187527|gb|ABI84258.1| photosystem I psaH protein [Arachis hypogaea]

 Score =  251 bits (641), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 124/144 (86%), Positives = 133/144 (92%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQPA + GL GSSL GTKL+ K + Q+ + K F++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPAAVNGLAGSSLNGTKLSFKSSHQTLKSKKFRSGAVVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           ED+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT
Sbjct: 61  EDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           ASGDILPIKKGPQLPPKLGPRGKI
Sbjct: 121 ASGDILPIKKGPQLPPKLGPRGKI 144

Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248194|ref|NP_001240092.1| uncharacterized protein LOC100776789 [Glycine max] gi|255640766|gb|ACU20667.1| unknown [Glycine max]

 Score =  251 bits (640), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 125/144 (86%), Positives = 136/144 (94%), Gaps = 5/144 (3%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLA++A VQP+T+KGL     AGTKL+ KP+RQSFRPK+F++GAVVAKYGDKSVYFDL
Sbjct: 1   MASLASLAVVQPSTVKGL-----AGTKLSFKPSRQSFRPKNFRSGAVVAKYGDKSVYFDL 55

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           EDLGNTTGQWDLYGSDAPSPYN LQSKFFETFA+PFTKRGLLLKFLILGGGSTLAYFS+T
Sbjct: 56  EDLGNTTGQWDLYGSDAPSPYNPLQSKFFETFASPFTKRGLLLKFLILGGGSTLAYFSST 115

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           ASGDILPIKKGPQLPPKLGPRGKI
Sbjct: 116 ASGDILPIKKGPQLPPKLGPRGKI 139

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407353|dbj|BAA04633.1| PSI-H precursor [Nicotiana sylvestris]

 Score =  248 bits (634), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 126/145 (86%), Positives = 133/145 (91%), Gaps = 1/145 (0%)

Query: 1   MASLATIAAVQPAT-IKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
           MASLAT+  VQP T IKGL GSS+AGTKL VK +R + +P   +AGAVVAKYGDKSVYFD
Sbjct: 1   MASLATLTVVQPTTTIKGLAGSSIAGTKLHVKSSRLNLKPSKSRAGAVVAKYGDKSVYFD 60

Query: 60  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSA 119
           LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS+
Sbjct: 61  LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSS 120

Query: 120 TASGDILPIKKGPQLPPKLGPRGKI 144
           TASGDILPIKKGPQLPPKLGPRGKI
Sbjct: 121 TASGDILPIKKGPQLPPKLGPRGKI 145

Source: Nicotiana sylvestris

Species: Nicotiana sylvestris

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110631498|gb|ABG81094.1| photosystem I subunit H [Pelargonium x hortorum]

 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 124/146 (84%), Positives = 132/146 (90%), Gaps = 2/146 (1%)

Query: 1   MASLATIAAVQPAT--IKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYF 58
           MASLAT AAVQP+   +KGL GSS++G KL  +PTRQSFR    +  AVVAKYGDKSVYF
Sbjct: 1   MASLATFAAVQPSISPVKGLAGSSISGKKLHFQPTRQSFRQTKLRTSAVVAKYGDKSVYF 60

Query: 59  DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS 118
           DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS
Sbjct: 61  DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFS 120

Query: 119 ATASGDILPIKKGPQLPPKLGPRGKI 144
           +TA+GDILPIKKGPQLPPKLGPRGKI
Sbjct: 121 STATGDILPIKKGPQLPPKLGPRGKI 146

Source: Pelargonium x hortorum

Species: Pelargonium x hortorum

Genus: Pelargonium

Family: Geraniaceae

Order: Geraniales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357454927|ref|XP_003597744.1| Photosystem I reaction center subunit VI [Medicago truncatula] gi|217075672|gb|ACJ86196.1| unknown [Medicago truncatula] gi|355486792|gb|AES67995.1| Photosystem I reaction center subunit VI [Medicago truncatula] gi|388507210|gb|AFK41671.1| unknown [Medicago truncatula]

 Score =  244 bits (623), Expect = 8e-63,   Method: Compositional matrix adjust.
 Identities = 124/147 (84%), Positives = 134/147 (91%), Gaps = 3/147 (2%)

Query: 1   MASLAT-IAAVQPA--TIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVY 57
           MASLAT +A VQPA   +KGL GSS+ GTKLT KP+RQ F+  + ++G+VVAKYGDKSVY
Sbjct: 1   MASLATSLACVQPAGLNVKGLAGSSITGTKLTFKPSRQIFKSNNLRSGSVVAKYGDKSVY 60

Query: 58  FDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYF 117
           FDLED+GNTTGQWDLYGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYF
Sbjct: 61  FDLEDIGNTTGQWDLYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYF 120

Query: 118 SATASGDILPIKKGPQLPPKLGPRGKI 144
           SATASGDILPIKKGPQLPPKLGPRGKI
Sbjct: 121 SATASGDILPIKKGPQLPPKLGPRGKI 147

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	144
TAIR|locus:2037440	145	PSAH2 "AT1G52230" [Arabidopsis	0.868	0.862	0.738	2.4e-44
TAIR|locus:2093377	145	PSAH-1 "AT3G16140" [Arabidopsi	0.868	0.862	0.722	5e-44

TAIR|locus:2037440 PSAH2 "AT1G52230" [Arabidopsis thaliana (taxid:3702)]

 Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
 Identities = 93/126 (73%), Positives = 102/126 (80%)

Query:     1 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
             MAS ATIAAVQP A +KGLGGSSLAG KL +KP+RQSF+ KS +AGAVVAKYGDKSVYFD
Sbjct:     1 MASFATIAAVQPSAAVKGLGGSSLAGAKLFIKPSRQSFKTKSTRAGAVVAKYGDKSVYFD 60

Query:    60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSA 119
             LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA
Sbjct:    61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query:   120 TASGDI 125
              ++GD+
Sbjct:   121 NSTGDV 126

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA

GO:0009538 "photosystem I reaction center" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;ISS;RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0010287 "plastoglobule" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2093377 PSAH-1 "AT3G16140" [Arabidopsis thaliana (taxid:3702)]

 Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
 Identities = 91/126 (72%), Positives = 103/126 (81%)

Query:     1 MASLATIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFD 59
             MASLAT+AAV+P A IKGLGGSSLAG KL++KP+R SF+PKS +A  VVAKYGDKSVYFD
Sbjct:     1 MASLATVAAVKPSAAIKGLGGSSLAGAKLSIKPSRLSFKPKSIRANGVVAKYGDKSVYFD 60

Query:    60 LEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSA 119
             LEDLGNTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKR            S L Y SA
Sbjct:    61 LEDLGNTTGQWDVYGSDAPSPYNPLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSA 120

Query:   120 TASGDI 125
             T++G++
Sbjct:   121 TSTGEV 126


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.129   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      144       114   0.00091  102 3  11 23  0.50    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  490 (52 KB)
  Total size of DFA:  100 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.55u 0.08s 11.63t   Elapsed:  00:00:34
  Total cpu time:  11.55u 0.08s 11.63t   Elapsed:  00:00:34
  Start:  Fri May 10 23:01:18 2013   End:  Fri May 10 23:01:52 2013

GO:0003674 "molecular_function" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009522 "photosystem I" evidence=IEA

GO:0009538 "photosystem I reaction center" evidence=IEA;ISS

GO:0015979 "photosynthesis" evidence=IEA;ISS;RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009657 "plastid organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O04006	PSAH_BRARA	No assigned EC number	0.8275	1.0	0.9931	N/A	no
A2Y7D9	PSAH_ORYSI	No assigned EC number	0.7191	0.9513	0.9647	N/A	no
Q0DG05	PSAH_ORYSJ	No assigned EC number	0.7191	0.9513	0.9647	yes	no
O65101	PSAH_MAIZE	No assigned EC number	0.7517	0.9791	0.9929	N/A	no
Q9SUI7	PSAH1_ARATH	No assigned EC number	0.8206	1.0	0.9931	no	no
Q9SUI6	PSAH2_ARATH	No assigned EC number	0.8344	1.0	0.9931	yes	no
P22179	PSAH_SPIOL	No assigned EC number	0.7986	1.0	1.0	N/A	no
P20143	PSAH_HORVU	No assigned EC number	0.7062	0.9791	0.9860	N/A	no
P20121	PSAH_PEA	No assigned EC number	0.9166	0.25	1.0	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	144
pfam03244	140	pfam03244, PSI_PsaH, Photosystem I reaction centre	4e-74
PLN00017	90	PLN00017, PLN00017, photosystem I reaction centre	4e-52

>gnl|CDD|146063 pfam03244, PSI_PsaH, Photosystem I reaction centre subunit VI

 Score =  217 bits (553), Expect = 4e-74
 Identities = 109/140 (77%), Positives = 118/140 (84%), Gaps = 1/140 (0%)

Query: 6   TIAAVQP-ATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLG 64
            +AAVQP    KGL GSS+AGTKL VKP+R+S RP   +AGAVVAKYGDKSVYFDLED+ 
Sbjct: 1   MLAAVQPTLAAKGLAGSSIAGTKLHVKPSRRSLRPARRRAGAVVAKYGDKSVYFDLEDIE 60

Query: 65  NTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGD 124
           NTTGQWD+YGSDAPSPYN LQSKFFETFAAPFTKRGLLLKFL LGGGS L Y+SA  + D
Sbjct: 61  NTTGQWDVYGSDAPSPYNDLQSKFFETFAAPFTKRGLLLKFLALGGGSLLVYYSAKGAKD 120

Query: 125 ILPIKKGPQLPPKLGPRGKI 144
            LPI KGPQ PPKLGPRGKI
Sbjct: 121 ALPITKGPQQPPKLGPRGKI 140

Photosystem I (PSI) is an integral membrane protein complex that uses light energy to mediate electron transfer from plastocyanin to ferredoxin. Length = 140

>gnl|CDD|177656 PLN00017, PLN00017, photosystem I reaction centre subunit VI; Provisional

 Score =  159 bits (405), Expect = 4e-52
 Identities = 76/90 (84%), Positives = 76/90 (84%)

Query: 44  AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLL 103
           AGAV AKYGDKSVYFDL DL NTTG WDLYGSDAPS YN LQSKFFETFAAPFTKRGLLL
Sbjct: 1   AGAVSAKYGDKSVYFDLGDLENTTGSWDLYGSDAPSRYNPLQSKFFETFAAPFTKRGLLL 60

Query: 104 KFLILGGGSTLAYFSATASGDILPIKKGPQ 133
           KFL LGGGS LAY  A  S D LPIKKGPQ
Sbjct: 61  KFLALGGGSALAYVGAKGSKDALPIKKGPQ 90

Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	144
PF03244	140	PSI_PsaH: Photosystem I reaction centre subunit VI	100.0
PLN00017	90	photosystem I reaction centre subunit VI; Provisio	100.0

>PF03244 PSI_PsaH: Photosystem I reaction centre subunit VI; InterPro: IPR004928 Photosystem I, a membrane complex found in the chloroplasts of plants and cyanobacteria uses light energy to transfer electrons from plastocyanin to ferredoxin []

Probab=100.00  E-value=4.7e-85  Score=506.03  Aligned_cols=139  Identities=84%  Similarity=1.318  Sum_probs=58.0

Q ss_pred             hhhhhccc-cccccccCCCCCceeeeccCccccCCCCcccceeEeeeCCeeeeeeccCCCCCcccceeeccCCCCCCChh
Q 032245            6 TIAAVQPA-TIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSL   84 (144)
Q Consensus         6 ~~~~~~~~-~v~gl~gSs~~g~kl~~kp~~~~~r~~~~ra~~v~AKYGdkSvYFDL~Di~nTTG~WDlYGsDaps~Yn~l   84 (144)
                      ++++|||+ +||||+||||+|+||+|||++++.|++++|+++|+||||||||||||+|||||||||||||+|+|||||+|
T Consensus         1 ~~a~~~~~~~~~gla~ss~~g~Kl~~~p~~~~~r~~~~ra~~v~AKYGdkSvYFDL~Di~nTTG~WDlYGsD~ps~Yn~l   80 (140)
T PF03244_consen    1 TLAAVQPTAAVKGLAGSSLSGTKLAVKPARQSFRRRNRRAGAVVAKYGDKSVYFDLEDIENTTGQWDLYGSDAPSPYNPL   80 (140)
T ss_dssp             --------------------------------------------------------S----SS-TTSS--SSSSS----S
T ss_pred             CcceeecccccccccccccccceEeecccccccccccccccceeeecccceeEEehhhccCCcccceecccCCCCCCCHH
Confidence            57899999 99999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhhccchhhHHHHHHHHHhCCceEEEeecccCCcccccccCCCCCCCCCCCCCC
Q 032245           85 QSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI  144 (144)
Q Consensus        85 QskFFe~fA~~ftkR~lllkfl~LgG~~~l~y~ga~as~D~LPIk~GPQ~pp~~GPRgki  144 (144)
                      |+||||+||+||||||+|||||+|||+++|+|+|+++++|+||||+|||+||++||||||
T Consensus        81 QskFFe~fA~~ftkRglllkfl~lgG~~~~~~~ga~~s~D~LPIk~GPq~pp~~GPRgki  140 (140)
T PF03244_consen   81 QSKFFETFAAPFTKRGLLLKFLALGGGSTLAYFGAKASKDLLPIKKGPQQPPKLGPRGKI  140 (140)
T ss_dssp             --SSSSSSS-TTSSSTTTSTTTTTTGGGTTTTTTST-SSS-SS---S--SS--SSSS---
T ss_pred             HHHHHHHHhcchhhHHHHHHHHHhcCcceEEEEcccCcccccccccCCCCCCCCCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999999998

The electron transfer components of the photosystem include the primary electron donor chlorophyll P-700 and 5 electron acceptors: chlorophyll (A0), phylloquinone (A1) and three 4Fe-4S iron-sulphur centres, designated Fx, Fa and Fb. The role of this protein, subunit VI or PsaH, may be in docking of the light harvesting complex I antenna to the core complex.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSF_H 2WSE_H 2WSC_H 2O01_H.

>PLN00017 photosystem I reaction centre subunit VI; Provisional

Probab=100.00  E-value=1.6e-60  Score=348.01  Aligned_cols=90  Identities=84%  Similarity=1.295  Sum_probs=88.7

Q ss_pred             cceeEeeeCCeeeeeeccCCCCCcccceeeccCCCCCCChhHHHHHHHhhccchhhHHHHHHHHHhCCceEEEeecccCC
Q 032245           44 AGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASG  123 (144)
Q Consensus        44 a~~v~AKYGdkSvYFDL~Di~nTTG~WDlYGsDaps~Yn~lQskFFe~fA~~ftkR~lllkfl~LgG~~~l~y~ga~as~  123 (144)
                      +++|+||||||||||||+|||||||+|||||+|+|||||++|+||||+||++|||||+|||||+|+|+++|+|+|+++++
T Consensus         1 a~~v~AKYGe~SvYFDL~Di~nTTGsWDlYG~d~~srY~~~QskFFe~~A~~~tkR~~l~~fl~l~g~~~~~~~g~~~~~   80 (90)
T PLN00017          1 AGAVSAKYGDKSVYFDLGDLENTTGSWDLYGSDAPSRYNPLQSKFFETFAAPFTKRGLLLKFLALGGGSALAYVGAKGSK   80 (90)
T ss_pred             CcccccccCcceeEEEhhhhccCcccceeeccCCCCCCChHHHHHHHHHhhhhhHHHHHHHHHHHcCcceEEEecccCcc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccccccCCC
Q 032245          124 DILPIKKGPQ  133 (144)
Q Consensus       124 D~LPIk~GPQ  133 (144)
                      |+||||+|||
T Consensus        81 d~LPI~~GPq   90 (90)
T PLN00017         81 DALPIKKGPQ   90 (90)
T ss_pred             cccccccCCC
Confidence            9999999998

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	144
2wsc_H	144	Improved Model Of Plant Photosystem I Length = 144		1e-45
3lw5_H	69	Improved Model Of Plant Photosystem I Length = 69		2e-22
2o01_H	75	The Structure Of A Plant Photosystem I Supercomplex		6e-14

>pdb|2WSC|H Chain H, Improved Model Of Plant Photosystem I Length = 144

Iteration: 1
 Score =  177 bits (450), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 87/125 (69%), Positives = 99/125 (79%)
Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60
Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120
Query: 121 ASGDI 125
           A  D+
Sbjct: 121 APQDV 125

>pdb|3LW5|H Chain H, Improved Model Of Plant Photosystem I Length = 69

Iteration: 1
 Score =  100 bits (250), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/67 (76%), Positives = 51/67 (76%)
Query: 59  DLEDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFS 118
           DLEDLGNTTGQWD YGSDAPSPYN LQSK FETFAAPFTKR            STLAY S
Sbjct: 1   DLEDLGNTTGQWDSYGSDAPSPYNPLQSKLFETFAAPFTKRGLLLKFLILGGGSTLAYLS 60
Query: 119 ATASGDI 125
           ATASGDI
Sbjct: 61  ATASGDI 67

>pdb|2O01|H Chain H, The Structure Of A Plant Photosystem I Supercomplex At 3.4 Angstrom Resolution Length = 75

Iteration: 1
 Score = 72.8 bits (177), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 36/56 (64%), Positives = 38/56 (67%)
Query: 70  WDLYGSDAPSPYNSLQSKFFETFAAPFTKRXXXXXXXXXXXXSTLAYFSATASGDI 125
           WD+YGSDAPSPYNSLQSKFFETFAAPFTKR            S L Y SA A  D+
Sbjct: 1   WDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDV 56

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	144
2wsc_H	144	Photosystem I reaction center subunit VI, chloropl	4e-66

>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H* Length = 144

 Score =  196 bits (499), Expect = 4e-66
 Identities = 115/144 (79%), Positives = 128/144 (88%)

Query: 1   MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDL 60
           MASLAT+AAVQP T+KGL GSS+AGTKL +KP RQSF+  + ++GA+VAKYGDKSVYFDL
Sbjct: 1   MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDL 60

Query: 61  EDLGNTTGQWDLYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSAT 120
           ED+ NTTGQWD+YGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGS L Y SA 
Sbjct: 61  EDIANTTGQWDVYGSDAPSPYNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSAN 120

Query: 121 ASGDILPIKKGPQLPPKLGPRGKI 144
           A  D+LPI +GPQ PPKLGPRGKI
Sbjct: 121 APQDVLPITRGPQQPPKLGPRGKI 144

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	144
2wsc_H	144	Photosystem I reaction center subunit VI, chloropl	100.0

>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*

Probab=100.00  E-value=4.2e-86  Score=512.33  Aligned_cols=144  Identities=80%  Similarity=1.278  Sum_probs=68.8

Q ss_pred             CcchhhhhhhccccccccccCCCCCceeeeccCccccCCCCcccceeEeeeCCeeeeeeccCCCCCcccceeeccCCCCC
Q 032245            1 MASLATIAAVQPATIKGLGGSSLAGTKLTVKPTRQSFRPKSFKAGAVVAKYGDKSVYFDLEDLGNTTGQWDLYGSDAPSP   80 (144)
Q Consensus         1 masla~~~~~~~~~v~gl~gSs~~g~kl~~kp~~~~~r~~~~ra~~v~AKYGdkSvYFDL~Di~nTTG~WDlYGsDaps~   80 (144)
                      ||||||+++|||.+||||+||||+|+||+|||++++.|+++.|+++|+||||||||||||+|||||||||||||+|+|||
T Consensus         1 maslat~~a~~p~~~kgl~gSs~~G~Kl~vkps~~~~~~~~~Ra~~v~AKYGdkSvYFDL~Di~nTTG~WDlYG~D~~s~   80 (144)
T 2wsc_H            1 MASLATLAAVQPTTLKGLAGSSIAGTKLHIKPARQSFKLNNVRSGAIVAKYGDKSVYFDLEDIANTTGQWDVYGSDAPSP   80 (144)
T ss_dssp             ----------------------------------------------------------CCSCCCCSSCTTSSCCSSCSCC
T ss_pred             CcchhhhhhcCccccccccccccccceEeecccccccccccccccceeeccCcceEEEEhhhcccccccceeccccCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHhhccchhhHHHHHHHHHhCCceEEEeecccCCcccccccCCCCCCCCCCCCCC
Q 032245           81 YNSLQSKFFETFAAPFTKRGLLLKFLILGGGSTLAYFSATASGDILPIKKGPQLPPKLGPRGKI  144 (144)
Q Consensus        81 Yn~lQskFFe~fA~~ftkR~lllkfl~LgG~~~l~y~ga~as~D~LPIk~GPQ~pp~~GPRgki  144 (144)
                      ||+||+||||+||+||||||+|||||+|||+++++|+++++++|+||||+|||+||++||||||
T Consensus        81 Yn~lQskFFe~~A~~ftkR~~ll~fL~L~g~~~l~y~~~~a~~~~LPI~~GPq~pp~~GPRgki  144 (144)
T 2wsc_H           81 YNSLQSKFFETFAAPFTKRGLLLKFLILGGGSLLTYVSANAPQDVLPITRGPQQPPKLGPRGKI  144 (144)
T ss_dssp             CCCSCCSSSSSSSCTTSSCTTCSTTTTTTGGGTTTTTTSCCSSCCCC-----------------
T ss_pred             CChHHHHHHHHhhccccHHHHHHHHHHhcCcceEEEeccCCCccccccccCCCCCCCCCCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999997

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00