Citrus Sinensis ID: 032410

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-
MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
cccccccccHHHHHHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHccccEEEccccccccccEEEEEccccHHHHHHHHHHHHHHHcHHHHHHcccccEEEEEEcccccccc
cccccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHccccHHHHHHHHHHcccEEEEEEcccccccEEEEEEEHHHHHHHHHHHHHHHHHHccEEEEEcccccEEEEEccccccEEc
MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEawksgnsqdfgklisasgseplIQLNEILqrapgvfgarfsgagfrGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSavlickpgdcarvi
MDPRLCNVEEEVYeahkneleptlaKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPgvfgarfsgagfrgCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
*****************************HYFTENRRVAKGLEAW*******FGKLIS****EPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGD*****
MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
****LCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASGSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query141 2.2.26 [Sep-21-2011]
Q8VYG2424 Galacturonokinase OS=Arab yes no 1.0 0.332 0.655 8e-52
Q03BB8388 Galactokinase OS=Lactobac yes no 0.794 0.288 0.341 3e-11
O84902387 Galactokinase OS=Lactobac yes no 0.666 0.242 0.384 4e-11
B3W7I5388 Galactokinase OS=Lactobac yes no 0.666 0.242 0.384 4e-11
Q9RGS1388 Galactokinase OS=Staphylo yes no 0.765 0.278 0.344 5e-10
A5UZX0391 Galactokinase OS=Roseifle yes no 0.886 0.319 0.302 9e-10
Q836P0387 Galactokinase OS=Enteroco yes no 0.652 0.237 0.368 1e-09
Q03PA8387 Galactokinase OS=Lactobac yes no 0.652 0.237 0.352 1e-09
Q0ST92387 Galactokinase OS=Clostrid yes no 0.765 0.279 0.319 1e-09
Q88SE8387 Galactokinase OS=Lactobac yes no 0.581 0.211 0.369 1e-09
>sp|Q8VYG2|GALAK_ARATH Galacturonokinase OS=Arabidopsis thaliana GN=GALAK PE=1 SV=1 Back     alignment and function desciption
 Score =  201 bits (512), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 99/151 (65%), Positives = 117/151 (77%), Gaps = 10/151 (6%)

Query: 1   MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 60
           ++P LCNVE  VYEAHK+EL+P LAKRAEHYF+EN RV KG EAW SGN ++FGKLISAS
Sbjct: 273 LEPTLCNVEHAVYEAHKHELKPVLAKRAEHYFSENMRVIKGREAWASGNLEEFGKLISAS 332

Query: 61  G----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 110
           G          +EPLIQL +IL +APGV+GARFSGAGFRGCCLA VDA++AE AASYV+ 
Sbjct: 333 GLSSIENYECGAEPLIQLYKILLKAPGVYGARFSGAGFRGCCLAFVDAEKAEAAASYVKD 392

Query: 111 EYFELQPELASQLNADSAVLICKPGDCARVI 141
           EY + QPE A+ LN    VLIC+ GD ARV+
Sbjct: 393 EYEKAQPEFANNLNGGKPVLICEAGDAARVL 423
Sugar-1-kinase with a strict substrate specificity for the alpha-anomeric configuration of D-galacturonic acid (D-GalA) and ATP. Involved in the biosynthesis of UDP-galacturonic acid (UDP-GalA) from the salvaged GalA that is released during growth-dependent cell wall restructuring.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 4EC: 4
>sp|Q03BB8|GAL1_LACC3 Galactokinase OS=Lactobacillus casei (strain ATCC 334) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|O84902|GAL1_LACCA Galactokinase OS=Lactobacillus casei GN=galK PE=3 SV=1 Back     alignment and function description
>sp|B3W7I5|GAL1_LACCB Galactokinase OS=Lactobacillus casei (strain BL23) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q9RGS1|GAL1_STACT Galactokinase OS=Staphylococcus carnosus (strain TM300) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|A5UZX0|GAL1_ROSS1 Galactokinase OS=Roseiflexus sp. (strain RS-1) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q836P0|GAL1_ENTFA Galactokinase OS=Enterococcus faecalis (strain ATCC 700802 / V583) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q03PA8|GAL1_LACBA Galactokinase OS=Lactobacillus brevis (strain ATCC 367 / JCM 1170) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q0ST92|GAL1_CLOPS Galactokinase OS=Clostridium perfringens (strain SM101 / Type A) GN=galK PE=3 SV=1 Back     alignment and function description
>sp|Q88SE8|GAL1_LACPL Galactokinase OS=Lactobacillus plantarum (strain ATCC BAA-793 / NCIMB 8826 / WCFS1) GN=galK PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
372995399 431 GALK [Morus alba var. multicaulis] 1.0 0.327 0.688 7e-53
225462522 436 PREDICTED: galacturonokinase [Vitis vini 1.0 0.323 0.675 1e-51
356513221 431 PREDICTED: galacturonokinase-like [Glyci 0.992 0.324 0.686 2e-51
449463918 437 PREDICTED: galacturonokinase-like [Cucum 1.0 0.322 0.642 6e-51
356527722 933 PREDICTED: uncharacterized protein LOC10 0.978 0.147 0.668 4e-50
22330971 424 galactokinase [Arabidopsis thaliana] gi| 1.0 0.332 0.655 6e-50
297833852 424 GHMP kinase family protein [Arabidopsis 1.0 0.332 0.655 6e-50
357520677 437 Galactokinase [Medicago truncatula] gi|3 0.971 0.313 0.673 1e-48
255546650 431 galactokinase, putative [Ricinus communi 1.0 0.327 0.602 2e-45
242077114 439 hypothetical protein SORBIDRAFT_06g02791 0.971 0.312 0.605 2e-42
>gi|372995399|gb|AEY11272.1| GALK [Morus alba var. multicaulis] Back     alignment and taxonomy information
 Score =  211 bits (537), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 104/151 (68%), Positives = 122/151 (80%), Gaps = 10/151 (6%)

Query: 1   MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 60
           ++P L ++E E Y+ HKN+L+P +AKRAEHYF+EN RV KGLE W SGN +D G+LI+AS
Sbjct: 281 VEPLLSDIEPEAYQRHKNKLQPNIAKRAEHYFSENLRVNKGLEFWASGNLEDLGRLITAS 340

Query: 61  G----------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRS 110
           G          SEPLIQL EIL RAPGVFGARFSGAGFRGCCLALVD++ A+EAAS+VR 
Sbjct: 341 GLSSIKNYECGSEPLIQLYEILLRAPGVFGARFSGAGFRGCCLALVDSNHADEAASFVRR 400

Query: 111 EYFELQPELASQLNADSAVLICKPGDCARVI 141
           EY +LQPELASQLN DSAVLIC+ GDCARVI
Sbjct: 401 EYRKLQPELASQLNQDSAVLICEAGDCARVI 431

Source: Morus alba var. multicaulis

Species: Morus alba

Genus: Morus

Family: Moraceae

Order: Rosales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225462522|ref|XP_002264528.1| PREDICTED: galacturonokinase [Vitis vinifera] gi|296090474|emb|CBI40670.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513221|ref|XP_003525312.1| PREDICTED: galacturonokinase-like [Glycine max] Back     alignment and taxonomy information
>gi|449463918|ref|XP_004149677.1| PREDICTED: galacturonokinase-like [Cucumis sativus] gi|449507367|ref|XP_004163011.1| PREDICTED: galacturonokinase-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356527722|ref|XP_003532457.1| PREDICTED: uncharacterized protein LOC100793652 [Glycine max] Back     alignment and taxonomy information
>gi|22330971|ref|NP_187681.2| galactokinase [Arabidopsis thaliana] gi|75304441|sp|Q8VYG2.1|GALAK_ARATH RecName: Full=Galacturonokinase; AltName: Full=D-galacturonic acid-1-P kinase gi|18175773|gb|AAL59925.1| putative galactokinase [Arabidopsis thaliana] gi|20465755|gb|AAM20366.1| putative galactokinase [Arabidopsis thaliana] gi|215276406|gb|ACJ65066.1| D-galacturonic acid-1-P kinase [Arabidopsis thaliana] gi|332641423|gb|AEE74944.1| galactokinase [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|297833852|ref|XP_002884808.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] gi|297330648|gb|EFH61067.1| GHMP kinase family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|357520677|ref|XP_003630627.1| Galactokinase [Medicago truncatula] gi|355524649|gb|AET05103.1| Galactokinase [Medicago truncatula] Back     alignment and taxonomy information
>gi|255546650|ref|XP_002514384.1| galactokinase, putative [Ricinus communis] gi|223546481|gb|EEF47980.1| galactokinase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|242077114|ref|XP_002448493.1| hypothetical protein SORBIDRAFT_06g027910 [Sorghum bicolor] gi|241939676|gb|EES12821.1| hypothetical protein SORBIDRAFT_06g027910 [Sorghum bicolor] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query141
TAIR|locus:2075730424 GalAK "galacturonic acid kinas 1.0 0.332 0.569 3.7e-39
TIGR_CMR|SO_0694381 SO_0694 "galactokinase" [Shewa 0.794 0.293 0.253 0.00018
UNIPROTKB|Q9KRP1386 galK "Galactokinase" [Vibrio c 0.326 0.119 0.434 0.00018
TIGR_CMR|VC_1595386 VC_1595 "galactokinase" [Vibri 0.326 0.119 0.434 0.00018
UNIPROTKB|P0A6T3382 galK [Escherichia coli K-12 (t 0.411 0.151 0.362 0.00029
TAIR|locus:2075730 GalAK "galacturonic acid kinase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 418 (152.2 bits), Expect = 3.7e-39, P = 3.7e-39
 Identities = 86/151 (56%), Positives = 103/151 (68%)

Query:     1 MDPRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS 60
             ++P LCNVE  VYEAHK+EL+P LAKRAEHYF+EN RV KG EAW SGN ++FGKLISAS
Sbjct:   273 LEPTLCNVEHAVYEAHKHELKPVLAKRAEHYFSENMRVIKGREAWASGNLEEFGKLISAS 332

Query:    61 G----------SEPLIQLNEILQRAPXXXXXXXXXXXXXXCCLALVDADRAEEAASYVRS 110
             G          +EPLIQL +IL +AP              CCLA VDA++AE AASYV+ 
Sbjct:   333 GLSSIENYECGAEPLIQLYKILLKAPGVYGARFSGAGFRGCCLAFVDAEKAEAAASYVKD 392

Query:   111 EYFELQPELASQLNADSAVLICKPGDCARVI 141
             EY + QPE A+ LN    VLIC+ GD ARV+
Sbjct:   393 EYEKAQPEFANNLNGGKPVLICEAGDAARVL 423
GO:0004335 "galactokinase activity" evidence=IEA;ISS;IDA
GO:0005524 "ATP binding" evidence=IEA;ISS
GO:0005737 "cytoplasm" evidence=ISM;IEA
GO:0006012 "galactose metabolic process" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA
GO:0016301 "kinase activity" evidence=IEA
GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA
GO:0046835 "carbohydrate phosphorylation" evidence=IEA;IDA
GO:0046396 "D-galacturonate metabolic process" evidence=IDA
GO:0047912 "galacturonokinase activity" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
TIGR_CMR|SO_0694 SO_0694 "galactokinase" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KRP1 galK "Galactokinase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms
TIGR_CMR|VC_1595 VC_1595 "galactokinase" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
UNIPROTKB|P0A6T3 galK [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00007137001
SubName- Full=Chromosome undetermined scaffold_184, whole genome shotgun sequence; (489 aa)
(Vitis vinifera)
Predicted Functional Partners:
GSVIVG00025477001
RecName- Full=Galactose-1-phosphate uridylyltransferase; EC=2.7.7.12; (332 aa)
•    •• 0.660
GSVIVG00020644001
SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (376 aa)
      • 0.424

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
PLN02865423 PLN02865, PLN02865, galactokinase 2e-73
COG0153390 COG0153, GalK, Galactokinase [Carbohydrate transpo 6e-23
PRK05322387 PRK05322, PRK05322, galactokinase; Provisional 3e-19
TIGR00131386 TIGR00131, gal_kin, galactokinase 6e-16
PRK03817351 PRK03817, PRK03817, galactokinase; Provisional 1e-14
PRK05101382 PRK05101, PRK05101, galactokinase; Provisional 6e-13
PRK00555363 PRK00555, PRK00555, galactokinase; Provisional 2e-11
PLN02521497 PLN02521, PLN02521, galactokinase 7e-06
pfam0854486 pfam08544, GHMP_kinases_C, GHMP kinases C terminal 0.003
>gnl|CDD|215466 PLN02865, PLN02865, galactokinase Back     alignment and domain information 
 Score =  224 bits (573), Expect = 2e-73
 Identities = 102/149 (68%), Positives = 117/149 (78%), Gaps = 10/149 (6%)

Query: 3   PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG- 61
           P LCNVE EVYEAHK +LE  LA+RAEHYF+EN RV KG+EAW SGN ++FGKLISASG 
Sbjct: 275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGL 334

Query: 62  ---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
                     EPLIQL EIL +APGV+GARFSGAGFRGCC+A VDA+ AEEAAS+VR EY
Sbjct: 335 SSIENYECGCEPLIQLYEILLKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEY 394

Query: 113 FELQPELASQLNADSAVLICKPGDCARVI 141
            + QPELAS +N D  VLIC+ GDCARV+
Sbjct: 395 EKAQPELASNINGDKPVLICEAGDCARVL 423

Length = 423
>gnl|CDD|223231 COG0153, GalK, Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>gnl|CDD|235407 PRK05322, PRK05322, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|232841 TIGR00131, gal_kin, galactokinase Back     alignment and domain information
>gnl|CDD|235163 PRK03817, PRK03817, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179937 PRK05101, PRK05101, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|179063 PRK00555, PRK00555, galactokinase; Provisional Back     alignment and domain information
>gnl|CDD|215285 PLN02521, PLN02521, galactokinase Back     alignment and domain information
>gnl|CDD|219894 pfam08544, GHMP_kinases_C, GHMP kinases C terminal Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 141
PLN02865423 galactokinase 100.0
COG0153390 GalK Galactokinase [Carbohydrate transport and met 100.0
PTZ00290468 galactokinase; Provisional 99.96
PRK05101382 galactokinase; Provisional 99.96
PRK05322387 galactokinase; Provisional 99.96
PRK00555363 galactokinase; Provisional 99.95
TIGR00131386 gal_kin galactokinase. The galactokinases found by 99.95
PLN02521497 galactokinase 99.94
PRK03817351 galactokinase; Provisional 99.92
KOG0631489 consensus Galactokinase [Carbohydrate transport an 99.77
PF0854485 GHMP_kinases_C: GHMP kinases C terminal ; InterPro 99.63
PTZ00298328 mevalonate kinase; Provisional 99.55
COG1577307 ERG12 Mevalonate kinase [Lipid metabolism] 99.54
PRK03926302 mevalonate kinase; Provisional 99.54
PLN02677387 mevalonate kinase 99.46
TIGR00549273 mevalon_kin mevalonate kinase. Paracoccus exhibits 99.46
TIGR01220358 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-typ 99.36
COG2605333 Predicted kinase related to galactokinase and meva 99.35
PRK13412974 fkp bifunctional fucokinase/L-fucose-1-P-guanylylt 99.34
PLN02451370 homoserine kinase 99.32
PRK01212301 homoserine kinase; Provisional 99.32
COG0083299 ThrB Homoserine kinase [Amino acid transport and m 99.31
PTZ00299336 homoserine kinase; Provisional 99.25
TIGR00191302 thrB homoserine kinase. P.aeruginosa homoserine ki 99.13
KOG1511397 consensus Mevalonate kinase MVK/ERG12 [Lipid trans 99.1
PRK03188300 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.98
PRK02534312 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.81
TIGR00144324 beta_RFAP_syn beta-RFAP synthase. This protein fam 98.76
PRK00128286 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 98.72
KOG1537355 consensus Homoserine kinase [Amino acid transport 98.6
PRK14613297 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.58
COG1907312 Predicted archaeal sugar kinases [General function 98.53
PRK01123282 shikimate kinase; Provisional 98.46
PRK14616287 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.44
TIGR01920261 Shik_kin_archae shikimate kinase. This model repre 98.35
PRK14614280 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.28
PRK14612276 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 98.21
TIGR00154293 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kin 98.19
TIGR01219454 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, 97.98
PRK14615296 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.94
PRK14608290 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.75
PRK14611275 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.38
PRK14610283 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.29
PRK14609269 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.22
PRK00343271 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kin 95.92
TIGR01240305 mevDPdecarb diphosphomevalonate decarboxylase. Alt 95.63
COG1947289 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-p 95.27
PRK00650288 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 94.54
KOG4644948 consensus L-fucose kinase [Carbohydrate transport 92.75
PLN02407343 diphosphomevalonate decarboxylase 92.61
KOG2833395 consensus Mevalonate pyrophosphate decarboxylase [ 92.54
COG1685278 Archaeal shikimate kinase [Amino acid transport an 90.43
PRK05905258 hypothetical protein; Provisional 90.21
COG3407329 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid 84.42
>PLN02865 galactokinase Back     alignment and domain information 
Probab=100.00  E-value=3.7e-33  Score=234.48  Aligned_cols=139  Identities=73%  Similarity=1.202  Sum_probs=133.3

Q ss_pred             CCcCCCCHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHHH
Q 032410            3 PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEIL   72 (141)
Q Consensus         3 ~~Lr~v~~~~~~~~~~~l~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~a   72 (141)
                      ++|||++.+++...+..+++.+++|++|+++|+.||.+++++|+++|++.||++|++||          ||++|.|++.+
T Consensus       275 ~~Lr~~~~~~~~~~~~~l~~~l~~Ra~Hv~~E~~Rv~~~~~al~~~d~~~~g~lm~~sh~Slrd~yevS~~eld~lv~~a  354 (423)
T PLN02865        275 PLLCNVEPEVYEAHKCKLEAVLARRAEHYFSENMRVIKGVEAWASGNLEEFGKLISASGLSSIENYECGCEPLIQLYEIL  354 (423)
T ss_pred             hhhhcCCHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhhhhHHhhccCCcHHHHHHHHHH
Confidence            57999999999999988999999999999999999999999999999999999999999          89999999999


Q ss_pred             hhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410           73 QRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI  141 (141)
Q Consensus        73 ~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~  141 (141)
                      ++..|++|+||||||||||+++|++++.++.+++++.+.|++++|++.++++.++.+|+++|++|++++
T Consensus       355 ~~~~Ga~GaR~tGgGfGGc~vaLv~~~~~~~~~~~v~~~Y~~~~p~~~~~~~~~~~~~~~~p~~Ga~~~  423 (423)
T PLN02865        355 LKAPGVYGARFSGAGFRGCCVAFVDAEMAEEAASFVRDEYEKAQPELASNINGDKPVLICEAGDCARVL  423 (423)
T ss_pred             HhcCCCeEEEEeccCCccEEEEEEchhHHHHHHHHHHHHHHhhccccccccCCCCcEEEEecCCCcccC
Confidence            975699999999999999999999999999999999999999999888888999999999999999875

>COG0153 GalK Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PTZ00290 galactokinase; Provisional Back     alignment and domain information
>PRK05101 galactokinase; Provisional Back     alignment and domain information
>PRK05322 galactokinase; Provisional Back     alignment and domain information
>PRK00555 galactokinase; Provisional Back     alignment and domain information
>TIGR00131 gal_kin galactokinase Back     alignment and domain information
>PLN02521 galactokinase Back     alignment and domain information
>PRK03817 galactokinase; Provisional Back     alignment and domain information
>KOG0631 consensus Galactokinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2 Back     alignment and domain information
>PTZ00298 mevalonate kinase; Provisional Back     alignment and domain information
>COG1577 ERG12 Mevalonate kinase [Lipid metabolism] Back     alignment and domain information
>PRK03926 mevalonate kinase; Provisional Back     alignment and domain information
>PLN02677 mevalonate kinase Back     alignment and domain information
>TIGR00549 mevalon_kin mevalonate kinase Back     alignment and domain information
>TIGR01220 Pmev_kin_Gr_pos phosphomevalonate kinase, ERG8-type, Gram-positive branch Back     alignment and domain information
>COG2605 Predicted kinase related to galactokinase and mevalonate kinase [General function prediction only] Back     alignment and domain information
>PRK13412 fkp bifunctional fucokinase/L-fucose-1-P-guanylyltransferase; Provisional Back     alignment and domain information
>PLN02451 homoserine kinase Back     alignment and domain information
>PRK01212 homoserine kinase; Provisional Back     alignment and domain information
>COG0083 ThrB Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PTZ00299 homoserine kinase; Provisional Back     alignment and domain information
>TIGR00191 thrB homoserine kinase Back     alignment and domain information
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism] Back     alignment and domain information
>PRK03188 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK02534 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00144 beta_RFAP_syn beta-RFAP synthase Back     alignment and domain information
>PRK00128 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG1537 consensus Homoserine kinase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK14613 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>COG1907 Predicted archaeal sugar kinases [General function prediction only] Back     alignment and domain information
>PRK01123 shikimate kinase; Provisional Back     alignment and domain information
>PRK14616 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01920 Shik_kin_archae shikimate kinase Back     alignment and domain information
>PRK14614 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14612 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR00154 ispE 4-diphosphocytidyl-2C-methyl-D-erythritol kinase Back     alignment and domain information
>TIGR01219 Pmev_kin_ERG8 phosphomevalonate kinase, ERG8-type, eukaryotic branch Back     alignment and domain information
>PRK14615 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14608 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14611 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14610 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK14609 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>PRK00343 ipk 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>TIGR01240 mevDPdecarb diphosphomevalonate decarboxylase Back     alignment and domain information
>COG1947 IspE 4-diphosphocytidyl-2C-methyl-D-erythritol 2-phosphate synthase [Lipid metabolism] Back     alignment and domain information
>PRK00650 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional Back     alignment and domain information
>KOG4644 consensus L-fucose kinase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PLN02407 diphosphomevalonate decarboxylase Back     alignment and domain information
>KOG2833 consensus Mevalonate pyrophosphate decarboxylase [Lipid transport and metabolism] Back     alignment and domain information
>COG1685 Archaeal shikimate kinase [Amino acid transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>PRK05905 hypothetical protein; Provisional Back     alignment and domain information
>COG3407 MVD1 Mevalonate pyrophosphate decarboxylase [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query141
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 9e-37
1pie_A419 Galactokinase; galactose, galactosemia, transferas 5e-36
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 1e-33
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 1e-19
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 2e-16
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 1e-15
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 2e-11
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 6e-11
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 6e-11
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 7e-11
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 3e-05
3k17_A365 LIN0012 protein; protein structure initiative II(P 3e-04
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Length = 399 Back     alignment and structure
 Score =  128 bits (324), Expect = 9e-37
 Identities = 40/149 (26%), Positives = 65/149 (43%), Gaps = 21/149 (14%)

Query: 3   PRLCNVEEEVYEAHKNELEPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG- 61
             L  V+ E  EA ++ +     +RA H   E RR A+   A + G+ + FG+L+  S  
Sbjct: 260 ESLREVQLEELEAARDLVSKEGFRRARHVVGEIRRTAQAAAALRRGDYRAFGRLMVESHR 319

Query: 62  ---------SEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEY 112
                       L QL E     PGV+G+R +G GF GC + L++A  A  A  +++  Y
Sbjct: 320 SLRDDYEVSCPELDQLVEAALAVPGVYGSRMTGGGFGGCTVTLLEASAAPHAMRHIQEHY 379

Query: 113 FELQPELASQLNADSAVLICKPGDCARVI 141
                         +   + +  D A+V+
Sbjct: 380 -----------GGTATFYLSQAADGAKVL 397
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Length = 419 Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Length = 350 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Length = 478 Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Length = 317 Back     alignment and structure
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Length = 520 Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Length = 357 Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Length = 332 Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Length = 292 Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Length = 308 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Length = 395 Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Length = 365 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
3v2u_C520 Protein GAL3; rossmann fold, GHMP superfamily, tra 99.94
1pie_A419 Galactokinase; galactose, galactosemia, transferas 99.91
2a2c_A478 N-acetylgalactosamine kinase; galactokinase, , tra 99.9
2cz9_A350 Probable galactokinase; structural genomics, NPPSF 99.9
1wuu_A399 Galactokinase; galactosemia, GHMP superfamily, tra 99.89
1kvk_A395 MK, mevalonate kinase; RMK, ATP, GHMP, transferase 99.71
3k85_A357 D-glycero-D-manno-heptose 1-phosphate kinase; bact 99.69
3gon_A335 Phosphomevalonate kinase; GHMP kinase superfamily, 99.68
4hac_A321 Mevalonate kinase; GHMP, ATP binding, phosphorylat 99.62
2hfs_A332 Mevalonate kinase, putative; GHMP kinase, trypanos 99.54
3k17_A365 LIN0012 protein; protein structure initiative II(P 99.5
2x7i_A308 Mevalonate kinase; transferase; HET: CIT; 2.20A {S 99.48
1h72_C296 HK, homoserine kinase; transferase, threonine bios 99.46
2oi2_A292 Mevalonate kinase; enzyme-inhibitor complex, trans 99.45
2pg9_A337 Phosphomevalonate kinase; GHMP kinase superfamily, 99.44
3hul_A298 HSK, HK, homoserine kinase; structural genomics, p 99.35
1kkh_A317 Mevalonate kinase; mixed beta sheet, phosphate-bin 99.31
3qt5_A332 Mevalonate diphosphate decarboxylase; GHMP kinase 99.28
2gs8_A317 Mevalonate pyrophosphate decarboxylase; streptococ 99.13
3pyf_A306 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 99.09
2hke_A380 Diphosphomevalonate decarboxylase, putative; meval 98.65
1uek_A275 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 98.47
1fi4_A416 Mevalonate 5-diphosphate decarboxylase; mixed alph 98.46
3lto_A323 Mevalonate diphosphate decarboxylase; protein stru 98.43
3f0n_A414 Mevalonate pyrophosphate decarboxylase; cholestero 98.41
2v8p_A271 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; 97.82
2ww4_A283 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; 97.11
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription regulation, transcription; HET: GLA ATP; 2.10A {Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A* Back     alignment and structure
Probab=99.94  E-value=3.8e-27  Score=201.45  Aligned_cols=116  Identities=29%  Similarity=0.534  Sum_probs=104.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC-------CHHHHHHHHHhhC----------ChhHHHHHHHHhhCCCceeEEEeC
Q 032410           23 TLAKRAEHYFTENRRVAKGLEAWKSG-------NSQDFGKLISASG----------SEPLIQLNEILQRAPGVFGARFSG   85 (141)
Q Consensus        23 ~~~~r~~~~v~e~~Rv~~~~~aL~~~-------d~~~lg~lm~~sh----------~pe~d~l~~~a~~~~Ga~GarisG   85 (141)
                      .+++|++|+++|+.||.+++++|.++       |++.||++|+++|          ||++|.|++++++ .|++|+||||
T Consensus       381 ~l~~RA~HVv~E~~Rv~~~~~al~~~~~~~~~~d~~~lg~lm~~sH~slr~~~~vS~peld~lv~~a~~-~Ga~GarlTG  459 (520)
T 3v2u_C          381 KLYQRAKHVYSESLRVLKALKMMTSATFHTDEDFFTDFGRLMNESQASCDKLYECSCIETNQICSIALA-NGSFGSRLTG  459 (520)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHHHHH-TTCSEEEECS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh-CCCCEEEEec
Confidence            48999999999999999999999997       5999999999999          8999999999998 8999999999


Q ss_pred             CCCCceeEEEe---ccccHHHHHHHHHHHHHhh-chhhhhhcCCCceEEEeecCCCeee
Q 032410           86 AGFRGCCLALV---DADRAEEAASYVRSEYFEL-QPELASQLNADSAVLICKPGDCARV  140 (141)
Q Consensus        86 aG~GG~vial~---~~~~~~~~~~~l~~~y~~~-~~~~~~~~~~~~~~~~~~p~~Ga~v  140 (141)
                      ||||||+|+|+   +++.++++++++++.|+++ ||++++. +.++.+|+++|++||.+
T Consensus       460 aG~GGc~iaLv~~~~~~~~~~~~~~l~~~y~~~~~~~~~~~-~~~~~~~~~~p~~GA~i  517 (520)
T 3v2u_C          460 AGWGGCTIHLVPSGANGNVEQVRKALIEKFYNVRYPDLTDE-ELKDAIIVSKPALGTCL  517 (520)
T ss_dssp             SCSSSEEEEEEEESTTCSHHHHHHHHHHHTHHHHCTTCCHH-HHHHHEEECCCCCCSEE
T ss_pred             CCCCceEEEEEcCCCHHHHHHHHHHHHHHHHhccCCccccc-cCCCeEEEecCCCceEE
Confidence            99999999999   8889999999999998865 3433321 34689999999999987
>1pie_A Galactokinase; galactose, galactosemia, transferase; HET: GLA; 2.10A {Lactococcus lactis} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>2a2c_A N-acetylgalactosamine kinase; galactokinase, , transferase; HET: NG1 ADP; 1.65A {Homo sapiens} PDB: 2a2d_A* Back     alignment and structure
>2cz9_A Probable galactokinase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.50A {Pyrococcus horikoshii} PDB: 2dei_A* 2dej_A* 1s4e_A* Back     alignment and structure
>1wuu_A Galactokinase; galactosemia, GHMP superfamily, transferase; HET: GLA ANP; 2.50A {Homo sapiens} SCOP: d.14.1.5 d.58.26.7 Back     alignment and structure
>1kvk_A MK, mevalonate kinase; RMK, ATP, GHMP, transferase; HET: ATP; 2.40A {Rattus norvegicus} SCOP: d.14.1.5 d.58.26.3 PDB: 2r42_A* 2r3v_A Back     alignment and structure
>3k85_A D-glycero-D-manno-heptose 1-phosphate kinase; bacteriodes thetaiotaomicron, protein structure initiative II(PSI II), nysgxrc; 2.28A {Bacteroides thetaiotaomicron} Back     alignment and structure
>3gon_A Phosphomevalonate kinase; GHMP kinase superfamily, ATP-binding, nucleotide- binding, transferase; HET: PMV ANP; 1.90A {Streptococcus pneumoniae} PDB: 1k47_A Back     alignment and structure
>4hac_A Mevalonate kinase; GHMP, ATP binding, phosphorylation, transferase; 1.92A {Methanosarcina mazei} Back     alignment and structure
>2hfs_A Mevalonate kinase, putative; GHMP kinase, trypanosomatid parasite, transferase; 1.75A {Leishmania major} PDB: 2hfu_A* Back     alignment and structure
>3k17_A LIN0012 protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics, NEW YORK SGX research center for structural genomics; HET: PGE; 2.10A {Listeria innocua} Back     alignment and structure
>2x7i_A Mevalonate kinase; transferase; HET: CIT; 2.20A {Staphylococcus aureus} Back     alignment and structure
>1h72_C HK, homoserine kinase; transferase, threonine biosynthesis; HET: ANP; 1.8A {Methanococcus jannaschii} SCOP: d.14.1.5 d.58.26.1 PDB: 1fwl_A 1fwk_A* 1h73_A* 1h74_A* Back     alignment and structure
>2oi2_A Mevalonate kinase; enzyme-inhibitor complex, transferase; HET: DP6; 2.50A {Streptococcus pneumoniae} Back     alignment and structure
>3hul_A HSK, HK, homoserine kinase; structural genomics, putative homoserine kinase, THRB, amino-acid biosynthesis, ATP-binding, cytoplasm; 2.19A {Listeria monocytogenes} Back     alignment and structure
>1kkh_A Mevalonate kinase; mixed beta sheet, phosphate-binding loop, beta-alpha-beta, transferase; 2.40A {Methanocaldococcus jannaschii} SCOP: d.14.1.5 d.58.26.3 PDB: 1vis_A Back     alignment and structure
>3qt5_A Mevalonate diphosphate decarboxylase; GHMP kinase family, lyase; 1.85A {Staphylococcus epidermidis} PDB: 3qt6_A* 3qt7_A* 4dpt_A* 4du7_A* 4dpu_A* 3qt8_A* 4dpx_A 4dpy_A* 4du8_A* 4dpw_A* 2hk2_A 2hk3_A Back     alignment and structure
>2gs8_A Mevalonate pyrophosphate decarboxylase; streptococcus pyogen structural genomics, PSI, protein structure initiative; HET: MSE; 1.50A {Streptococcus pyogenes m1 gas} Back     alignment and structure
>3pyf_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; transferase; HET: ANP; 1.70A {Mycobacterium tuberculosis} PDB: 3pyd_A* 3pye_A* 3pyg_A* 4ed4_A* 4dxl_A* 4emd_A* Back     alignment and structure
>2hke_A Diphosphomevalonate decarboxylase, putative; mevalonate diphosphate decarboxylase, lyase; 1.80A {Trypanosoma brucei} Back     alignment and structure
>1uek_A 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase; non-mevalonate pathway, GHMP superfamily; 1.70A {Thermus thermophilus} SCOP: d.14.1.5 d.58.26.5 Back     alignment and structure
>1fi4_A Mevalonate 5-diphosphate decarboxylase; mixed alpha/beta structure, ATP binding, CHOL biosynthesis, structural genomics, PSI; 2.27A {Saccharomyces cerevisiae} SCOP: d.14.1.5 d.58.26.2 Back     alignment and structure
>3lto_A Mevalonate diphosphate decarboxylase; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.27A {Legionella pneumophila} Back     alignment and structure
>3f0n_A Mevalonate pyrophosphate decarboxylase; cholesterol biosynthesis, lipid synthesis, lyase, steroid biosynthesis, sterol biosynthesis; 1.90A {Mus musculus} PDB: 3d4j_A Back     alignment and structure
>2v8p_A 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; nucleotide-binding, isoprene biosynthesis, transferase, ATP-binding, non-mevalonate; HET: CDP ADP; 2.1A {Aquifex aeolicus} PDB: 2v2v_A* 2v2q_A* 2v34_A* 2v2z_A* 2vf3_A* Back     alignment and structure
>2ww4_A 4-diphosphocytidyl-2C-methyl-D-erythritol kinase; non-mevalonate pathway, isoprenoid biosynthesis, transferase; HET: ADP; 2.00A {Escherichia coli} PDB: 1oj4_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 141
d1piea2183 d.58.26.7 (A:214-396) Galactokinase {Lactococcus l 2e-24
d1wuua2176 d.58.26.7 (A:217-392) Galactokinase {Human (Homo s 2e-22
d1s4ea2171 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyro 1e-18
d1kkha2137 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon 5e-10
d1kvka2169 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Ratt 6e-06
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Length = 183 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

 Score = 90.5 bits (224), Expect = 2e-24
 Identities = 43/148 (29%), Positives = 66/148 (44%), Gaps = 18/148 (12%)

Query: 5   LCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISAS--- 60
           L  +  E ++A+ + + + TL KRA H   EN R     +A+ +GN   FG+L++AS   
Sbjct: 43  LGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHAS 102

Query: 61  -------GSEPLIQLNEILQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYF 113
                      L  L E  Q+  GV GAR +GAGF GC +ALV  D        V   Y 
Sbjct: 103 LKDDYEVTGLELDTLAETAQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYE 162

Query: 114 ELQPELASQLNADSAVLICKPGDCARVI 141
           E        +   ++  + + G  +  +
Sbjct: 163 E-------VVGYPASFYVAQIGSGSTKL 183
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Length = 176 Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 171 Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 137 Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 169 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query141
d1piea2183 Galactokinase {Lactococcus lactis [TaxId: 1358]} 100.0
d1wuua2176 Galactokinase {Human (Homo sapiens) [TaxId: 9606]} 100.0
d1s4ea2171 Galactokinase {Archaeon Pyrococcus furiosus [TaxId 100.0
d1kvka2169 Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 99.8
d1kkha2137 Mevalonate kinase {Archaeon Methanococcus jannasch 99.72
d1k47a2135 Phosphomevalonate kinase (PMK) {Streptococcus pneu 99.56
d1h72c2133 Homoserine kinase {Archaeon Methanococcus jannasch 99.43
d1ueka2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 97.66
d1oj4a2120 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol k 96.38
d1fi4a2203 Mevalonate 5-diphosphate decarboxylase {Baker's ye 95.94
>d1piea2 d.58.26.7 (A:214-396) Galactokinase {Lactococcus lactis [TaxId: 1358]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: GHMP Kinase, C-terminal domain
family: Galactokinase
domain: Galactokinase
species: Lactococcus lactis [TaxId: 1358]

Probab=100.00  E-value=1.4e-37  Score=233.12  Aligned_cols=132  Identities=33%  Similarity=0.510  Sum_probs=126.5

Q ss_pred             CCcCCCCHHHHHHHhccc-CHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhhC----------ChhHHHHHHH
Q 032410            3 PRLCNVEEEVYEAHKNEL-EPTLAKRAEHYFTENRRVAKGLEAWKSGNSQDFGKLISASG----------SEPLIQLNEI   71 (141)
Q Consensus         3 ~~Lr~v~~~~~~~~~~~l-~~~~~~r~~~~v~e~~Rv~~~~~aL~~~d~~~lg~lm~~sh----------~pe~d~l~~~   71 (141)
                      ++|||+++++|..+.+.+ ++.+++|++|+++|+.||.+++++|+++|++.||++|++||          ||++|.|++.
T Consensus        41 ~~L~~v~~~~l~~~~~~l~d~~~~rRa~Hvv~En~Rv~~a~~al~~~d~~~~G~lm~~Sh~sl~~~~evs~~elD~Lv~~  120 (183)
T d1piea2          41 QSLGELSNEEFDANTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGNLTKFGELLNASHASLKDDYEVTGLELDTLAET  120 (183)
T ss_dssp             SSGGGCCHHHHHHTGGGTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTSCCCCHHHHHHHHH
T ss_pred             chHhhhcHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHH
Confidence            579999999999999998 68899999999999999999999999999999999999999          9999999999


Q ss_pred             HhhCCCceeEEEeCCCCCceeEEEeccccHHHHHHHHHHHHHhhchhhhhhcCCCceEEEeecCCCeeeC
Q 032410           72 LQRAPGVFGARFSGAGFRGCCLALVDADRAEEAASYVRSEYFELQPELASQLNADSAVLICKPGDCARVI  141 (141)
Q Consensus        72 a~~~~Ga~GarisGaG~GG~vial~~~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~~~~~~p~~Ga~v~  141 (141)
                      +++..|++|+||||||||||+|+|++.+..+++.+++.+.|.++       ||.++.+|+++|++||++|
T Consensus       121 a~~~~G~~GaRmtGgGfGGcvialv~~~~~~~~~~~i~~~y~~~-------~g~~~~~~~~~~~~Ga~~i  183 (183)
T d1piea2         121 AQKQAGVLGARMTGAGFGGCAIALVAHDNVSAFRKAVGQVYEEV-------VGYPASFYVAQIGSGSTKL  183 (183)
T ss_dssp             HHHSTTEEEEEECSSCSSSEEEEEEEGGGHHHHHHHHHHHHHHH-------HSSCCEEEECCBCCCSBCC
T ss_pred             HHHhCCCeEeeccccCCCceEEEEecHHHHHHHHHHHHHHHHHh-------hCCCCcEEEEecCCCceeC
Confidence            98767999999999999999999999999999999999999985       6999999999999999975
>d1wuua2 d.58.26.7 (A:217-392) Galactokinase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1s4ea2 d.58.26.7 (A:181-351) Galactokinase {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1kvka2 d.58.26.3 (A:226-394) Mevalonate kinase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d1kkha2 d.58.26.3 (A:181-317) Mevalonate kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1k47a2 d.58.26.4 (A:195-329) Phosphomevalonate kinase (PMK) {Streptococcus pneumoniae r6 [TaxId: 171101]} Back     information, alignment and structure
>d1h72c2 d.58.26.1 (C:168-300) Homoserine kinase {Archaeon Methanococcus jannaschii [TaxId: 2190]} Back     information, alignment and structure
>d1ueka2 d.58.26.5 (A:149-268) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1oj4a2 d.58.26.5 (A:164-283) 4-(cytidine 5'-diphospho)-2C-methyl-D-erythritol kinase IspE {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1fi4a2 d.58.26.2 (A:191-393) Mevalonate 5-diphosphate decarboxylase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure