Citrus Sinensis ID: 032617

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------
Protein Sequence
MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFRR
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
massshrggaggpfyggaapyrsreglttrpvagsdeiqlridpvnadlddeITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFRR
Flexible Loop (DISEMBL)
massshrggaggpfyggaapyrSREGLTTrpvagsdeiqlridpvnadLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFRR
Low Complexity Region (SEG)
MASSSHRggaggpfyggaapyRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVlfalflffilYMWSKMFRR
Disordered region (IsUnstruct)
***************************************LRIDPVNADL**EITGL******LRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKM***
Disordered Region (DISOPRED)
******************************************************GLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLI***A***************HGSNHIMHVVLFALFLFFILYMWSKMFRR
Disordered Region (DISEMBL)
*********AGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFRR
Disordered Region (DISPRO)
*********************************GSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFR*
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVxxxxxxxxxxxxxxxxxxxxxAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFRR
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	137	2.2.26 [Sep-21-2011]
Q8VXX9	137	Bet1-like protein At4g146	yes	no	1.0	1.0	0.751	3e-59
Q8L9S0	134	Bet1-like protein At1g290	no	no	0.941	0.962	0.751	4e-48
P43682	97	Protein transport protein	yes	no	0.678	0.958	0.326	3e-05

>sp|Q8VXX9|BETL1_ARATH Bet1-like protein At4g14600 OS=Arabidopsis thaliana GN=At4g14600 PE=2 SV=1

 Score =  226 bits (576), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 103/137 (75%), Positives = 124/137 (90%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           MAS+ HR GAGG  YGGAAPYRSREGL+TR  AGS+EIQLRIDP+++DLDDEITGL  QV
Sbjct: 1   MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           +QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVVLF
Sbjct: 61  RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120

Query: 121 ALFLFFILYMWSKMFRR 137
           AL +FF+LY+WSKMF+R
Sbjct: 121 ALLVFFVLYIWSKMFKR 137

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q8L9S0|BETL2_ARATH Bet1-like protein At1g29060 OS=Arabidopsis thaliana GN=At1g29060 PE=2 SV=1

 Score =  189 bits (481), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 97/129 (75%), Positives = 115/129 (89%)

Query: 9   GAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQ 68
           GAGG  YGGA PYRSREGL+TR  +GS+EIQLRIDP+++DLDDEI GL  QV+QL+N+AQ
Sbjct: 6   GAGGSLYGGADPYRSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQ 65

Query: 69  EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFIL 128
           EI SEA  Q+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVVLFAL LFFIL
Sbjct: 66  EIGSEAKSQRDFLDELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFIL 125

Query: 129 YMWSKMFRR 137
           YMWSKMF+R
Sbjct: 126 YMWSKMFKR 134

Required for vesicular transport from the ER to the Golgi complex. Functions as a SNARE associated with ER-derived vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|P43682|SFT1_YEAST Protein transport protein SFT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SFT1 PE=1 SV=1

 Score = 47.0 bits (110), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 2/95 (2%)

Query: 41  RIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMR 100
           R     ++ D ++ GL +++   RN+ QEI   A      ++Q+  +L      +KN+  
Sbjct: 5   RYSQTESNNDRKLEGLANKLATFRNINQEIGDRAVSDSSVINQMTDSLGSMFTDIKNSSS 64

Query: 101 RLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMF 135
           RL +S+ K G N I  +V  AL +FFILY   K+F
Sbjct: 65  RLTRSL-KAG-NSIWRMVGLALLIFFILYTLFKLF 97

Vesicle SNARE required for retrograde transport within the Golgi complex.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
18414258	137	protein transport protein SFT1 [Arabidop	1.0	1.0	0.751	2e-57
224082037	135	predicted protein [Populus trichocarpa]	0.875	0.888	0.783	1e-51
225459158	133	PREDICTED: bet1-like protein At4g14600 [	0.970	1.0	0.686	3e-51
297804840	726	hypothetical protein ARALYDRAFT_355343 [	1.0	0.188	0.773	4e-51
388498424	132	unknown [Lotus japonicus]	0.963	1.0	0.693	6e-50
224067015	122	predicted protein [Populus trichocarpa]	0.883	0.991	0.760	8e-50
351723165	132	uncharacterized protein LOC100306642 [Gl	0.963	1.0	0.678	2e-49
356515754	133	PREDICTED: bet1-like protein At4g14600-l	0.970	1.0	0.700	3e-49
356508049	133	PREDICTED: LOW QUALITY PROTEIN: bet1-lik	0.948	0.977	0.716	4e-49
351725199	132	uncharacterized protein LOC100500358 [Gl	0.963	1.0	0.656	7e-48

>gi|18414258|ref|NP_567434.1| protein transport protein SFT1 [Arabidopsis thaliana] gi|75248462|sp|Q8VXX9.1|BETL1_ARATH RecName: Full=Bet1-like protein At4g14600 gi|18389246|gb|AAL67066.1| unknown protein [Arabidopsis thaliana] gi|20259643|gb|AAM14339.1| unknown protein [Arabidopsis thaliana] gi|21554084|gb|AAM63165.1| unknown [Arabidopsis thaliana] gi|26452326|dbj|BAC43249.1| unknown protein [Arabidopsis thaliana] gi|332658064|gb|AEE83464.1| protein transport protein SFT1 [Arabidopsis thaliana]

 Score =  226 bits (576), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 103/137 (75%), Positives = 124/137 (90%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           MAS+ HR GAGG  YGGAAPYRSREGL+TR  AGS+EIQLRIDP+++DLDDEITGL  QV
Sbjct: 1   MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           +QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVVLF
Sbjct: 61  RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120

Query: 121 ALFLFFILYMWSKMFRR 137
           AL +FF+LY+WSKMF+R
Sbjct: 121 ALLVFFVLYIWSKMFKR 137

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082037|ref|XP_002306555.1| predicted protein [Populus trichocarpa] gi|222856004|gb|EEE93551.1| predicted protein [Populus trichocarpa]

 Score =  207 bits (526), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 94/120 (78%), Positives = 111/120 (92%)

Query: 18  AAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQ 77
           AAPYRSREGL+TRP+A SDEIQLRIDP++ DLDDEITGLRSQV+QLRNVAQEI SEA +Q
Sbjct: 16  AAPYRSREGLSTRPMASSDEIQLRIDPIHGDLDDEITGLRSQVRQLRNVAQEIESEAKYQ 75

Query: 78  KDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFRR 137
           KDFL+ LQMT++KAQAGVKNN+R+LNKSI+K+G NHI+HVVLFALF F ++Y+WSKM RR
Sbjct: 76  KDFLETLQMTVMKAQAGVKNNIRKLNKSIIKNGGNHIVHVVLFALFCFMVVYLWSKMSRR 135

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225459158|ref|XP_002285712.1| PREDICTED: bet1-like protein At4g14600 [Vitis vinifera] gi|302142024|emb|CBI19227.3| unnamed protein product [Vitis vinifera]

 Score =  206 bits (523), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 94/137 (68%), Positives = 119/137 (86%), Gaps = 4/137 (2%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           MAS+SHRG    P+YG A PYRSREGLTTR  AGSDEIQLRIDP+NADLDDEITGLRSQ+
Sbjct: 1   MASTSHRGA---PYYG-ADPYRSREGLTTRAAAGSDEIQLRIDPLNADLDDEITGLRSQI 56

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           +QL+ VAQEI SEA+FQ D +++LQMTL++A+AGVKNN+R+L +SI++ GS+H++HVVLF
Sbjct: 57  RQLKGVAQEIESEATFQNDLINKLQMTLVRAEAGVKNNLRQLKRSIIQEGSSHVIHVVLF 116

Query: 121 ALFLFFILYMWSKMFRR 137
           AL  F ++Y+WSK+ RR
Sbjct: 117 ALLCFTVIYLWSKISRR 133

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297804840|ref|XP_002870304.1| hypothetical protein ARALYDRAFT_355343 [Arabidopsis lyrata subsp. lyrata] gi|297316140|gb|EFH46563.1| hypothetical protein ARALYDRAFT_355343 [Arabidopsis lyrata subsp. lyrata]

 Score =  205 bits (522), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 106/137 (77%), Positives = 125/137 (91%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           MAS+ HRGGAGG  YGGAAPYRSREGL+TR  AGS+EIQLRIDP+++DLDDEITGL  QV
Sbjct: 590 MASNPHRGGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 649

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           +QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVVLF
Sbjct: 650 RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 709

Query: 121 ALFLFFILYMWSKMFRR 137
           AL +FFILYMWSKMF+R
Sbjct: 710 ALLVFFILYMWSKMFKR 726

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498424|gb|AFK37278.1| unknown [Lotus japonicus]

 Score =  201 bits (512), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 95/137 (69%), Positives = 119/137 (86%), Gaps = 5/137 (3%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           MA++S R G+   FYGGAAPYRS +GL+TRP A S+EIQLRIDP+  DLDDE+TGL SQV
Sbjct: 1   MAANSQRPGS---FYGGAAPYRSSDGLSTRPGAASEEIQLRIDPM--DLDDELTGLHSQV 55

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           ++L+N+AQEI +E  +QKDFL+QLQMT+IKAQAGVKNN+RRLNKSI++ GSNHI+HV+LF
Sbjct: 56  RRLKNIAQEIGTEVKYQKDFLEQLQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIVHVILF 115

Query: 121 ALFLFFILYMWSKMFRR 137
           AL  FFI+Y+WSKM R+
Sbjct: 116 ALVCFFIVYLWSKMSRK 132

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224067015|ref|XP_002302327.1| predicted protein [Populus trichocarpa] gi|222844053|gb|EEE81600.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (511), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 92/121 (76%), Positives = 110/121 (90%)

Query: 17  GAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASF 76
           GAAPYRSREGL+TRPVA SDEIQLRIDP++ DLDDEITGLRSQV+QLRNVAQ I SEA +
Sbjct: 2   GAAPYRSREGLSTRPVASSDEIQLRIDPIHWDLDDEITGLRSQVRQLRNVAQVIESEAKY 61

Query: 77  QKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFR 136
           +KDFL+ LQMT++KAQ GVKNN+R+LNKSI+K+G NHI+HVV+FALF F ++Y+WSKM R
Sbjct: 62  EKDFLETLQMTVMKAQVGVKNNLRKLNKSIIKNGGNHIVHVVVFALFGFLVVYLWSKMSR 121

Query: 137 R 137
           R
Sbjct: 122 R 122

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723165|ref|NP_001238037.1| uncharacterized protein LOC100306642 [Glycine max] gi|255629155|gb|ACU14922.1| unknown [Glycine max]

 Score =  199 bits (507), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 93/137 (67%), Positives = 119/137 (86%), Gaps = 5/137 (3%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           MA++SHR G+    YGGAAPYRSR+GL+TRPV  S+EIQLRIDP+  DLDDEITGL  QV
Sbjct: 1   MAANSHRLGSS---YGGAAPYRSRDGLSTRPVGASEEIQLRIDPL--DLDDEITGLHRQV 55

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           ++L++VA+EI +E  +QK FL++LQMT+IKAQAGVKNN+RRLNKSIV+ GSNHI+HV++F
Sbjct: 56  RRLKHVAEEIGTEVKYQKTFLEELQMTMIKAQAGVKNNLRRLNKSIVQSGSNHIIHVIIF 115

Query: 121 ALFLFFILYMWSKMFRR 137
           AL  FF++Y+WSKMFR+
Sbjct: 116 ALVCFFVVYLWSKMFRK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515754|ref|XP_003526563.1| PREDICTED: bet1-like protein At4g14600-like [Glycine max]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 96/137 (70%), Positives = 115/137 (83%), Gaps = 4/137 (2%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           M+S SH+G +   FYG AAPYRSREGL+TRPVA SDEIQL IDP   D DDEITGLR QV
Sbjct: 1   MSSHSHKGTS---FYGDAAPYRSREGLSTRPVASSDEIQLHIDP-GIDFDDEITGLRGQV 56

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           K+L+NVA+EI SE  FQ+DFL+Q+QM +I+AQAGVKNN+RRLNKSIVK+GSN+I+HV+ F
Sbjct: 57  KKLKNVAEEIGSEVKFQRDFLEQVQMVMIQAQAGVKNNLRRLNKSIVKNGSNNIVHVIAF 116

Query: 121 ALFLFFILYMWSKMFRR 137
           AL  FFI+Y WSKM R+
Sbjct: 117 ALVCFFIVYFWSKMSRK 133

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356508049|ref|XP_003522774.1| PREDICTED: LOW QUALITY PROTEIN: bet1-like protein At4g14600-like [Glycine max]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/134 (71%), Positives = 114/134 (85%), Gaps = 4/134 (2%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           M+S+SHRG +   FYG AAPYRSREGL+TRPVA SDEIQL IDP   D DDEITGLR QV
Sbjct: 1   MSSNSHRGAS---FYGNAAPYRSREGLSTRPVASSDEIQLHIDP-GVDFDDEITGLRGQV 56

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           ++L+NVA+EI SE  FQ+DFL+Q++M +IKAQAGVKNN+RRLNKSIVK+GSNHI+HVV+F
Sbjct: 57  RKLKNVAEEIGSEVKFQRDFLEQVKMVMIKAQAGVKNNLRRLNKSIVKNGSNHIVHVVVF 116

Query: 121 ALFLFFILYMWSKM 134
           AL  FFI+Y  SKM
Sbjct: 117 ALVCFFIVYFRSKM 130

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725199|ref|NP_001236828.1| uncharacterized protein LOC100500358 [Glycine max] gi|255630117|gb|ACU15412.1| unknown [Glycine max]

 Score =  194 bits (494), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/137 (65%), Positives = 117/137 (85%), Gaps = 5/137 (3%)

Query: 1   MASSSHRGGAGGPFYGGAAPYRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
           M ++SHR G+    YGGAAPYRSR+GL+ RPV  S+EIQLRIDP+  DLDDEITGL  QV
Sbjct: 1   MVANSHRVGSS---YGGAAPYRSRDGLSPRPVGASEEIQLRIDPL--DLDDEITGLHRQV 55

Query: 61  KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLF 120
           ++L++VA+EI +E  +QK+FL++LQMT+IKAQAGVKNN+RRLNKSI++ GSNHI+HV+LF
Sbjct: 56  RRLKHVAEEIGTEVKYQKNFLEELQMTMIKAQAGVKNNLRRLNKSIIQSGSNHIIHVILF 115

Query: 121 ALFLFFILYMWSKMFRR 137
           AL  FF++Y+WSKM R+
Sbjct: 116 ALVCFFVVYLWSKMIRK 132

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	137
TAIR|locus:2129940	137	AT4G14600 "AT4G14600" [Arabido	1.0	1.0	0.620	3.6e-41
TAIR|locus:2029954	134	AT1G29060 "AT1G29060" [Arabido	0.846	0.865	0.672	5.5e-38

TAIR|locus:2129940 AT4G14600 "AT4G14600" [Arabidopsis thaliana (taxid:3702)]

 Score = 437 (158.9 bits), Expect = 3.6e-41, P = 3.6e-41
 Identities = 85/137 (62%), Positives = 104/137 (75%)

Query:     1 MASSSHRXXXXXXXXXXXXXXRSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQV 60
             MAS+ HR              RSREGL+TR  AGS+EIQLRIDP+++DLDDEITGL  QV
Sbjct:     1 MASNPHRSGAGGSLYGGAAPYRSREGLSTRNAAGSEEIQLRIDPMHSDLDDEITGLHGQV 60

Query:    61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXX 120
             +QL+N+AQEI SEA FQ+DFLD+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV  
Sbjct:    61 RQLKNIAQEIGSEAKFQRDFLDELQMTLIRAQAGVKNNIRKLNMSIIRSGNNHIMHVVLF 120

Query:   121 XXXXXXXXYMWSKMFRR 137
                     Y+WSKMF+R
Sbjct:   121 ALLVFFVLYIWSKMFKR 137

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2029954 AT1G29060 "AT1G29060" [Arabidopsis thaliana (taxid:3702)]

 Score = 407 (148.3 bits), Expect = 5.5e-38, P = 5.5e-38
 Identities = 78/116 (67%), Positives = 96/116 (82%)

Query:    22 RSREGLTTRPVAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFL 81
             RSREGL+TR  +GS+EIQLRIDP+++DLDDEI GL  QV+QL+N+AQEI SEA  Q+DFL
Sbjct:    19 RSREGLSTRNASGSEEIQLRIDPMHSDLDDEILGLHGQVRQLKNIAQEIGSEAKSQRDFL 78

Query:    82 DQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVXXXXXXXXXXYMWSKMFRR 137
             D+LQMTLI+AQAGVKNN+R+LN SI++ G+NHIMHVV          YMWSKMF+R
Sbjct:    79 DELQMTLIRAQAGVKNNIRKLNLSIIRSGNNHIMHVVLFALLLFFILYMWSKMFKR 134


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.130   0.360    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      137       113   0.00091  102 3  11 22  0.43    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  533 (57 KB)
  Total size of DFA:  108 KB (2074 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  14.20u 0.15s 14.35t   Elapsed:  00:00:00
  Total cpu time:  14.20u 0.15s 14.35t   Elapsed:  00:00:00
  Start:  Thu May  9 18:17:29 2013   End:  Thu May  9 18:17:29 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8VXX9	BETL1_ARATH	No assigned EC number	0.7518	1.0	1.0	yes	no
Q8L9S0	BETL2_ARATH	No assigned EC number	0.7519	0.9416	0.9626	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	AT4G14600	unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- plasma membrane; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Target SNARE coiled-coil region (InterPro-IPR000727); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G29060.1); Has 95 Blast hits to 95 proteins in 38 species- Archae - 0; Bacteria - 0; Metazoa - 27; Fungi - 19; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). ; Required for vesicular transport from the ER to the Golgi c [...] (137 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	ATYKT62	ATYKT62; member of YKT6 Gene Family ; May be involved in the secretory pathway (By similarity) (199 aa)						•			0.800
	YKT61	YKT61; member of YKT6 Gene Family ; May be involved in the secretory pathway (By similarity) (221 aa)						•			0.800
	SYP31	SYP31 (SYNTAXIN OF PLANTS 31); SNAP receptor; A SNARE protein (ortholog of syntaxin 5), a membr [...] (336 aa)						•			0.800
	SYP32	SYP32 (SYNTAXIN OF PLANTS 32); SNAP receptor; member of Glycoside Hydrolase Family 17 ; Vesicle [...] (347 aa)						•			0.800
	GOS12	GOS12 (GOLGI SNARE 12); SNARE binding; Encodes a member of the GOS1 (Golgi SNARE) gene family. [...] (239 aa)						•			0.800
	GOS11	GOS11 (golgi snare 11); SNARE binding; Golgi SNARE 11 protein (GOS11) ; Involved in transport f [...] (223 aa)						•			0.800

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	137
KOG3385	118	consensus V-SNARE [Intracellular trafficking, secr	99.93
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	99.77
PF05739	63	SNARE: SNARE domain; InterPro: IPR000727 The proce	99.48
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	99.32
cd00193	60	t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fu	99.21
smart00397	66	t_SNARE Helical region found in SNAREs. All alpha-	99.13
KOG3065	273	consensus SNAP-25 (synaptosome-associated protein)	98.95
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	98.46
KOG2678	244	consensus Predicted membrane protein [Function unk	98.29
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	98.23
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	98.04
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	98.03
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	97.9
KOG0809	305	consensus SNARE protein TLG2/Syntaxin 16 [Intracel	97.85
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	97.78
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	97.73
KOG3251	213	consensus Golgi SNAP receptor complex member [Intr	97.08
PF09753	251	Use1: Membrane fusion protein Use1; InterPro: IPR0	96.63
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	96.57
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	96.23
KOG3894	316	consensus SNARE protein Syntaxin 18/UFE1 [Intracel	96.09
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	95.92
PF12352	66	V-SNARE_C: Snare region anchored in the vesicle me	95.9
PF10779	71	XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemoly	95.87
KOG3208	231	consensus SNARE protein GS28 [Intracellular traffi	95.55
KOG0860	116	consensus Synaptobrevin/VAMP-like protein [Intrace	95.36
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	94.91
KOG0811	269	consensus SNARE protein PEP12/VAM3/Syntaxin 7/Synt	94.53
PF08372	156	PRT_C: Plant phosphoribosyltransferase C-terminal;	94.28
PRK10884	206	SH3 domain-containing protein; Provisional	93.65
COG5325	283	t-SNARE complex subunit, syntaxin [Intracellular t	93.21
PF03908	92	Sec20: Sec20; InterPro: IPR005606 Sec20 is a membr	92.91
PF04210	70	MtrG: Tetrahydromethanopterin S-methyltransferase,	92.73
KOG0812	311	consensus SNARE protein SED5/Syntaxin 5 [Intracell	92.71
PHA02650	81	hypothetical protein; Provisional	91.84
PF11902	420	DUF3422: Protein of unknown function (DUF3422); In	91.75
PF07889	126	DUF1664: Protein of unknown function (DUF1664); In	91.66
PF08614	194	ATG16: Autophagy protein 16 (ATG16); InterPro: IPR	91.39
PRK00846	77	hypothetical protein; Provisional	91.22
PF01519	102	DUF16: Protein of unknown function DUF16; InterPro	90.82
PF04102	69	SlyX: SlyX; InterPro: IPR007236 The SlyX protein h	90.69
KOG0862	216	consensus Synaptobrevin/VAMP-like protein SEC22 [I	90.52
TIGR01149	70	mtrG N5-methyltetrahydromethanopterin:coenzyme M m	90.33
PRK00736	68	hypothetical protein; Provisional	89.84
KOG0810	297	consensus SNARE protein Syntaxin 1 and related pro	89.48
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	88.63
TIGR00383	318	corA magnesium Mg(2+) and cobalt Co(2+) transport	88.31
PRK01026	77	tetrahydromethanopterin S-methyltransferase subuni	88.03
PF11166	98	DUF2951: Protein of unknown function (DUF2951); In	87.96
PRK00295	68	hypothetical protein; Provisional	87.66
PF07340	392	Herpes_IE1: Cytomegalovirus IE1 protein; InterPro:	87.6
KOG1666	220	consensus V-SNARE [Intracellular trafficking, secr	87.41
PRK02119	73	hypothetical protein; Provisional	86.97
PHA02844	75	putative transmembrane protein; Provisional	86.82
PRK04325	74	hypothetical protein; Provisional	86.73
PRK02793	72	phi X174 lysis protein; Provisional	86.36
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	86.31
PRK04406	75	hypothetical protein; Provisional	86.3
PF00957	89	Synaptobrevin: Synaptobrevin; InterPro: IPR001388	84.67
PF05531	75	NPV_P10: Nucleopolyhedrovirus P10 protein; InterPr	84.58
PRK10404	101	hypothetical protein; Provisional	83.76
PF15106	226	TMEM156: TMEM156 protein family	83.29
PF15188	85	CCDC-167: Coiled-coil domain-containing protein 16	83.02
PHA02819	71	hypothetical protein; Provisional	82.52
PF05478	806	Prominin: Prominin; InterPro: IPR008795 The promin	82.41
PF04728	56	LPP: Lipoprotein leucine-zipper; InterPro: IPR0068	82.15
PF06679	163	DUF1180: Protein of unknown function (DUF1180); In	82.15
PF09889	59	DUF2116: Uncharacterized protein containing a Zn-r	81.71
PHA03054	72	IMV membrane protein; Provisional	81.56
COG5074	280	t-SNARE complex subunit, syntaxin [Intracellular t	81.54
PF01102	122	Glycophorin_A: Glycophorin A; InterPro: IPR001195	81.22
KOG3202	235	consensus SNARE protein TLG1/Syntaxin 6 [Intracell	80.81
PF03904	230	DUF334: Domain of unknown function (DUF334); Inter	80.72
COG2900	72	SlyX Uncharacterized protein conserved in bacteria	80.58

>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=2.3e-25  Score=158.63  Aligned_cols=92  Identities=22%  Similarity=0.441  Sum_probs=86.8

Q ss_pred             hcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHH
Q 032617           42 IDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFA  121 (137)
Q Consensus        42 ~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~  121 (137)
                      .+..|+|||+.++.|.++|..||.++.+|++||+.||++||.|+++||++...|.+||.|++.+.++++.+.+||+++|+
T Consensus        27 ~~~le~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg~~l~~~m~~f~  106 (118)
T KOG3385|consen   27 LASLERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSGISLLCWMAVFS  106 (118)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCCcchHHHHHHHH
Confidence            34456899999999999999999999999999999999999999999999999999999999999998889999999999


Q ss_pred             HHHHHHHHHHHH
Q 032617          122 LFLFFILYMWSK  133 (137)
Q Consensus       122 v~vffvly~l~k  133 (137)
                      +++||++||+++
T Consensus       107 lV~~fi~~~~lt  118 (118)
T KOG3385|consen  107 LVAFFILWVWLT  118 (118)
T ss_pred             HHHHHHhheeeC
Confidence            999999998864

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.77  E-value=4.9e-18  Score=134.93  Aligned_cols=96  Identities=20%  Similarity=0.317  Sum_probs=79.3

Q ss_pred             hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCch-h
Q 032617           36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNH-I  114 (137)
Q Consensus        36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~-~  114 (137)
                      ..++..++.|.+|||+.||.|+++|+++|++|..||+|+++|+.+||++++.||.+.++|.++++++.+|.+.+..|. |
T Consensus       137 ~~~~~~qqqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~~s~~~~~  216 (235)
T KOG3202|consen  137 QEIVQLQQQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRMASQCSQW  216 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence            455555566679999999999999999999999999999999999999999999999999999999999999766666 5


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 032617          115 MHVVLFALFLFFILYMW  131 (137)
Q Consensus       115 ~~lil~~v~vffvly~l  131 (137)
                      |.++++++++++++.+|
T Consensus       217 ~~il~l~~~~~lvv~i~  233 (235)
T KOG3202|consen  217 CAILLLVGLLLLVVIIF  233 (235)
T ss_pred             hHHHHHHHHHHHHHHHh
Confidence            54444444444444443

>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]

Probab=99.48  E-value=5.3e-13  Score=85.15  Aligned_cols=61  Identities=23%  Similarity=0.445  Sum_probs=59.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      |+|+.|+.|+++|..||+++.+|++||++|+.+||++++.|+.+...|++++++|.++.+.
T Consensus         1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~   61 (63)
T PF05739_consen    1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY   61 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            6899999999999999999999999999999999999999999999999999999999885

Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=99.32  E-value=5.7e-11  Score=94.92  Aligned_cols=90  Identities=14%  Similarity=0.241  Sum_probs=83.4

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHH
Q 032617           46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLF  125 (137)
Q Consensus        46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vf  125 (137)
                      +..||+-.++|.+-.++||+-+..+++-+++.+++||..+..+|+....|+.+.+|++...+++.+|+.|.+|++++++|
T Consensus       162 ~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~~~~~~~~~i~~v~~~F  241 (251)
T PF09753_consen  162 RNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKSWGCWTWLMIFVVIIVF  241 (251)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence            46899999999999999999999999999999999999999999999999999999999998776677777788888889


Q ss_pred             HHHHHHHHHh
Q 032617          126 FILYMWSKMF  135 (137)
Q Consensus       126 fvly~l~k~~  135 (137)
                      +++++++|+|
T Consensus       242 i~mvl~iri~  251 (251)
T PF09753_consen  242 IMMVLFIRIF  251 (251)
T ss_pred             HHHHHHheeC
Confidence            9999999875

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent

Probab=99.21  E-value=9.6e-11  Score=73.02  Aligned_cols=58  Identities=24%  Similarity=0.435  Sum_probs=56.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK  104 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~  104 (137)
                      .++|+.++.|+..|..|++++.+|+.||.+|+++||.++++++.+...++.+.+++.+
T Consensus         2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~k   59 (60)
T cd00193           2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKK   59 (60)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            5889999999999999999999999999999999999999999999999999999976

>smart00397 t_SNARE Helical region found in SNAREs

Probab=99.13  E-value=4.6e-10  Score=70.97  Aligned_cols=61  Identities=21%  Similarity=0.381  Sum_probs=58.1

Q ss_pred             chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617           44 PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK  104 (137)
Q Consensus        44 ~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~  104 (137)
                      .+..++|+.++.|+..|..+++++.+|+.||.+|+.+||.+++.++.+...++++.+++.+
T Consensus         5 ~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~   65 (66)
T smart00397        5 QMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKK   65 (66)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhc
Confidence            3458999999999999999999999999999999999999999999999999999999876

All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".

>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.95  E-value=4e-09  Score=85.77  Aligned_cols=64  Identities=20%  Similarity=0.347  Sum_probs=60.5

Q ss_pred             cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617           43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI  106 (137)
Q Consensus        43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~  106 (137)
                      +..++|.|+-|+.|++.+.+||++|.++|.||+.||+.||.|++..|+....+..+.+|+++++
T Consensus       210 ~~~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl  273 (273)
T KOG3065|consen  210 PAAEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL  273 (273)
T ss_pred             ChhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence            4556789999999999999999999999999999999999999999999999999999999874

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.46  E-value=4.6e-06  Score=68.24  Aligned_cols=82  Identities=17%  Similarity=0.308  Sum_probs=68.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCc-hhHHHHHHHHHHHHHHH
Q 032617           51 DEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSN-HIMHVVLFALFLFFILY  129 (137)
Q Consensus        51 ~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~-~~~~lil~~v~vffvly  129 (137)
                      ..+..++++|.-|.+|-..+-.=|.+|.++.-.+++.||.+...+..+.+-|-+.+.+-+++ |.+.=|++++++||++|
T Consensus       227 ~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSSNRwLmvkiF~i~ivFflvf  306 (311)
T KOG0812|consen  227 KTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSSNRWLMVKIFGILIVFFLVF  306 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence            34566888888899999999999999999999999999999999999999999999975444 44444777777888888


Q ss_pred             HHH
Q 032617          130 MWS  132 (137)
Q Consensus       130 ~l~  132 (137)
                      |++
T Consensus       307 vlf  309 (311)
T KOG0812|consen  307 VLF  309 (311)
T ss_pred             HHh
Confidence            775

>KOG2678 consensus Predicted membrane protein [Function unknown]

Probab=98.29  E-value=1.5e-05  Score=63.14  Aligned_cols=88  Identities=13%  Similarity=0.190  Sum_probs=77.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHH
Q 032617           49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNHIMHVVLFALFLFFI  127 (137)
Q Consensus        49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~~~~lil~~v~vffv  127 (137)
                      |.+-.+.|..-++.||..+..-++-+++.|..|..+....|.....|..+..|+.+-.++.. .|..|.+|+|+|+.|++
T Consensus       153 QeeLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVs  232 (244)
T KOG2678|consen  153 QEELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVS  232 (244)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence            56677788888899999999999999999999999999999999999999999999999763 45566677788888899


Q ss_pred             HHHHHHHhc
Q 032617          128 LYMWSKMFR  136 (137)
Q Consensus       128 ly~l~k~~~  136 (137)
                      +.+++++|+
T Consensus       233 Miliiqifk  241 (244)
T KOG2678|consen  233 MILIIQIFK  241 (244)
T ss_pred             HHHHHHHhh
Confidence            999999886

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.23  E-value=1e-05  Score=66.76  Aligned_cols=56  Identities=18%  Similarity=0.308  Sum_probs=52.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      .+-.|..++.-|+++-.+|.-.|+.|.+++|+++.++.++..-+..+...+++..+
T Consensus       207 ~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~  262 (297)
T KOG0810|consen  207 EIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK  262 (297)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46678999999999999999999999999999999999999999999999987665

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=98.04  E-value=0.00024  Score=48.74  Aligned_cols=82  Identities=15%  Similarity=0.158  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617           52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMW  131 (137)
Q Consensus        52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l  131 (137)
                      .|......++.--..+..--+++.+|++-|.++++.++.....|+.+.+-++++-++...-.+++.+.|++++..++|++
T Consensus         9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~yI~   88 (92)
T PF03908_consen    9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLYIL   88 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHh
Confidence            33444444444444566667889999999999999999999999999999999999764444444455556666666666


Q ss_pred             HH
Q 032617          132 SK  133 (137)
Q Consensus       132 ~k  133 (137)
                      +|
T Consensus        89 ~r   90 (92)
T PF03908_consen   89 WR   90 (92)
T ss_pred             hh
Confidence            54

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=98.03  E-value=7.4e-05  Score=59.88  Aligned_cols=83  Identities=13%  Similarity=0.208  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc----CCchhHHHHHHHHHHH
Q 032617           50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH----GSNHIMHVVLFALFLF  125 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~----~~~~~~~lil~~v~vf  125 (137)
                      -+.+-.|..++.-|-++-.+|..+|.+|.++.|-+++++..+...+......+.+.+++.    ..++.||.|+|++++|
T Consensus       184 h~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~~iii~v  263 (280)
T COG5074         184 HQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGICFIIIIV  263 (280)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhHHHHHHH
Confidence            345778889999999999999999999999999999999999999999999998888853    3578899888887775


Q ss_pred             HHHHHHHH
Q 032617          126 FILYMWSK  133 (137)
Q Consensus       126 fvly~l~k  133 (137)
                      +| |++.|
T Consensus       264 iv-~vv~~  270 (280)
T COG5074         264 IV-VVVFK  270 (280)
T ss_pred             HH-HHHhc
Confidence            54 44433

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=97.90  E-value=0.00017  Score=58.80  Aligned_cols=77  Identities=16%  Similarity=0.325  Sum_probs=64.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc---CCchhHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH---GSNHIMHVVLFALF  123 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~---~~~~~~~lil~~v~  123 (137)
                      .|-|+.+..|+.+|.-|-.|-.+++.=|.+|..+.|.++-.++.+..-++++.+-|.+...-.   +.|..|.+++++++
T Consensus       191 ~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~Llil~vv  270 (283)
T COG5325         191 TERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYLLLILLVV  270 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhHHHHHHHH
Confidence            456899999999999999999999999999999999999999999999999999999988732   23444444433333

>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.85  E-value=0.00012  Score=60.23  Aligned_cols=87  Identities=15%  Similarity=0.266  Sum_probs=72.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--cCCchhHHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK--HGSNHIMHVVLFALFL  124 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~--~~~~~~~~lil~~v~v  124 (137)
                      .|-|+++-.+..+|.-|-+|-.+++.=|-+|..++|.++-.++++...++.+.+.+.|.-..  .+.+..|+++++++++
T Consensus       214 ~erE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii  293 (305)
T KOG0809|consen  214 REREKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLII  293 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHH
Confidence            45577889999999999999999999999999999999999999999999999999998774  3345566666666666


Q ss_pred             HHHHHHHHH
Q 032617          125 FFILYMWSK  133 (137)
Q Consensus       125 ffvly~l~k  133 (137)
                      |+++.+++|
T Consensus       294 ~llvllilk  302 (305)
T KOG0809|consen  294 ALLVLLILK  302 (305)
T ss_pred             HHHHHHHhh
Confidence            666555554

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=97.78  E-value=0.00057  Score=46.26  Aligned_cols=60  Identities=17%  Similarity=0.272  Sum_probs=40.1

Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH--HHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           49 LDDEITGLRSQVKQLRN-VAQEIHSEASFQKD--FLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        49 qD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~--lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      |++.+..+.+.|...++ +..+|..-++...+  .|++-.+.+.......++..+++++-..-
T Consensus         1 ~~dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~~F~k~a~~l~r~~~~   63 (89)
T PF00957_consen    1 QNDKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAKQFKKNAKKLKRKMWW   63 (89)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence            35667777888888877 55566554443332  45555567777788888888888777663

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.0006  Score=55.60  Aligned_cols=77  Identities=13%  Similarity=0.209  Sum_probs=63.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc--CCchhHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH--GSNHIMHVVLFALF  123 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~--~~~~~~~lil~~v~  123 (137)
                      +|-++.+..|...|.-+..|-.+++.=|.+|..+.|++++.++.+..-+.+++..|.+..+-.  ..+..|++++|+++
T Consensus       176 eeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~~~  254 (269)
T KOG0811|consen  176 EEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVGGP  254 (269)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHHHH
Confidence            456778888999999999999999999999999999999999999999999999999999842  23344555444433

>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.08  E-value=0.021  Score=45.12  Aligned_cols=84  Identities=10%  Similarity=0.091  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617           52 EITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMW  131 (137)
Q Consensus        52 ~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l  131 (137)
                      .+..=+..|.-+=..+.+|=+-+.+|+..|-....-|-...+.|.=+..-|.-+-++.. .=+++.++.++++++++|++
T Consensus       130 ~l~~s~~~lDd~l~~G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~-~Dk~iF~~G~i~~~v~~yl~  208 (213)
T KOG3251|consen  130 SLKRSHNMLDDLLESGSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVR-EDKIIFYGGVILTLVIMYLF  208 (213)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHH
Confidence            34444444444455688899999999999999999999888888655554444444321 12233344445555666777


Q ss_pred             HHHhc
Q 032617          132 SKMFR  136 (137)
Q Consensus       132 ~k~~~  136 (137)
                      ++|+|
T Consensus       209 ~~wlr  213 (213)
T KOG3251|consen  209 YRWLR  213 (213)
T ss_pred             HHHhC
Confidence            77765

>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport

Probab=96.63  E-value=0.063  Score=42.86  Aligned_cols=97  Identities=11%  Similarity=0.198  Sum_probs=70.1

Q ss_pred             hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh----cCCc
Q 032617           37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK----HGSN  112 (137)
Q Consensus        37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~----~~~~  112 (137)
                      ..+...+.....++..-+.|.+-+.   .+|..+.+-...=+..|.+=..-++++...+.++...+++..++    .+.+
T Consensus       149 ~~~~~~e~~l~~~~~~QE~L~~em~---~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~  225 (251)
T PF09753_consen  149 TSQASLEKILQHHRNLQEDLTEEML---SLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS  225 (251)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3344444444566666777776654   45778888887778888888999999999999999999888775    3456


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhc
Q 032617          113 HIMHVVLFALFLFFILYMWSKMFR  136 (137)
Q Consensus       113 ~~~~lil~~v~vffvly~l~k~~~  136 (137)
                      +.|++.++++++++++.+++-|.|
T Consensus       226 ~~~~~~~~i~~v~~~Fi~mvl~ir  249 (251)
T PF09753_consen  226 WGCWTWLMIFVVIIVFIMMVLFIR  249 (251)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHhe
Confidence            778888877777776666665443

They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.57  E-value=0.05  Score=43.09  Aligned_cols=70  Identities=17%  Similarity=0.269  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHHHHH
Q 032617           65 NVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNHIMHVVLFALFLFFILYMWSKM  134 (137)
Q Consensus        65 ~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~~~~lil~~v~vffvly~l~k~  134 (137)
                      +|+..|=+++..|-+-|..-..-.-.++..|+++.+=++.|.++.- .++.|+.|++++++++++.+..||
T Consensus       149 qIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~ilY~kf  219 (220)
T KOG1666|consen  149 QIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLILYSKF  219 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            4566677777888888888778888888888888888888887643 456666666555554444444443

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.23  E-value=0.16  Score=36.63  Aligned_cols=27  Identities=15%  Similarity=0.204  Sum_probs=15.9

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           81 LDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        81 LD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      |++=.+.+..+.+.-+++..++++-+.
T Consensus        62 L~drad~L~~~as~F~~~A~klkrk~w   88 (116)
T KOG0860|consen   62 LDDRADQLQAGASQFEKTAVKLKRKMW   88 (116)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444445555566666677777765544

>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.12  Score=43.05  Aligned_cols=73  Identities=11%  Similarity=0.242  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHH
Q 032617           58 SQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYM  130 (137)
Q Consensus        58 ~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~  130 (137)
                      .+|--+-.+-..+-+-|-.|..-+|-|-+..+.+...++....-+.+..+.+++..-|++++++|+-|+++++
T Consensus       239 ~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf~lLFl  311 (316)
T KOG3894|consen  239 KRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSFSLLFL  311 (316)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH
Confidence            3333333344556677888889999999999999999999999999999987766666666666665555444

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=95.92  E-value=0.36  Score=36.67  Aligned_cols=85  Identities=11%  Similarity=0.155  Sum_probs=34.0

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHH
Q 032617           50 DDEITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFIL  128 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvl  128 (137)
                      |.-=+.|..-+..++. +-.+|+.|=..-......++..+..+.+++......++.-+.+.++-.+=|++.+++.++-++
T Consensus        90 e~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr~~~g~i~~~~a~~  169 (177)
T PF07798_consen   90 EKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLRWLVGVIFGCVALV  169 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333334444444444 333333332223333344444444444444444444444444332222223444444333333


Q ss_pred             HHHHHH
Q 032617          129 YMWSKM  134 (137)
Q Consensus       129 y~l~k~  134 (137)
                      .-++|+
T Consensus       170 la~~r~  175 (177)
T PF07798_consen  170 LAILRL  175 (177)
T ss_pred             HHHHHH
Confidence            334443

>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C

Probab=95.90  E-value=0.19  Score=31.87  Aligned_cols=60  Identities=8%  Similarity=0.117  Sum_probs=52.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           49 LDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        49 qD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      ..+.|+.=...+...-.+|.+|.+++..|.+.|....+.++.+.+.|..+.+-|+++.++
T Consensus         6 e~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR   65 (66)
T PF12352_consen    6 ESDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR   65 (66)
T ss_dssp             HHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence            344777777888888899999999999999999999999999999999999888887664

>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes []

Probab=95.87  E-value=0.23  Score=32.40  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=40.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617           69 EIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSK  133 (137)
Q Consensus        69 ~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k  133 (137)
                      .|...++++.+-++.++..-+.....+++...+++++-..  .+|.|.+++-+++ .+++|+++|
T Consensus        10 ~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n--~kW~~r~iiGaiI-~~i~~~i~K   71 (71)
T PF10779_consen   10 RIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN--TKWIWRTIIGAII-TAIIYLIIK   71 (71)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH-HHHHHHHhC
Confidence            4455566666777777777778888888888889888875  3444444443333 345566554

>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.55  E-value=0.21  Score=39.88  Aligned_cols=73  Identities=18%  Similarity=0.192  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-CchhHHHHHHHHHHHHHHHHH
Q 032617           59 QVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNHIMHVVLFALFLFFILYMW  131 (137)
Q Consensus        59 ~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~~~~lil~~v~vffvly~l  131 (137)
                      .|..+=.+|..-.+.+..|+.+|.++++-|..+.+++=....-|.++-.+.. ...++-+|+-+|.+||++||+
T Consensus       157 ~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrrdslILa~Vis~C~llllfy~~  230 (231)
T KOG3208|consen  157 LVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRRDSLILAAVISVCTLLLLFYWI  230 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHh
Confidence            3444445677777888899999999999999999988888777777766543 334444455555555666654

>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.36  E-value=0.7  Score=33.37  Aligned_cols=52  Identities=17%  Similarity=0.240  Sum_probs=22.2

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617           45 VNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN   97 (137)
Q Consensus        45 ~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~   97 (137)
                      ..+|-|+-.+-+..-|...=+=...+ +|+++-.+-|....+.|.++..+|++
T Consensus        34 tq~QvdeVv~IMr~NV~KVlER~ekL-~~L~drad~L~~~as~F~~~A~klkr   85 (116)
T KOG0860|consen   34 TQAQVDEVVDIMRENVEKVLERGEKL-DELDDRADQLQAGASQFEKTAVKLKR   85 (116)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHhcchH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33445555555555444332222221 23333344444444444444444444

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=94.91  E-value=0.74  Score=31.26  Aligned_cols=83  Identities=17%  Similarity=0.140  Sum_probs=47.4

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH----HhhhhHHHHHHHHHHHhhcCCchhHHHHHH
Q 032617           46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKD-FLDQLQMTLIK----AQAGVKNNMRRLNKSIVKHGSNHIMHVVLF  120 (137)
Q Consensus        46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~-lLD~l~~~~d~----~~~~L~~t~~rl~~v~~~~~~~~~~~lil~  120 (137)
                      .++-++..+.+..-++.++..+....+++++.-. .+++..+....    +..+.+.....+...++.    +.|.-|.+
T Consensus         4 ~~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~V~e----~P~~svgi   79 (94)
T PF05957_consen    4 KAELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTEDYVRE----NPWQSVGI   79 (94)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----ChHHHHHH
Confidence            3556667777777777777766666666665433 44444444443    333344444444444443    55666777


Q ss_pred             HHHHHHHHHHHH
Q 032617          121 ALFLFFILYMWS  132 (137)
Q Consensus       121 ~v~vffvly~l~  132 (137)
                      ++++-|++=+++
T Consensus        80 AagvG~llG~Ll   91 (94)
T PF05957_consen   80 AAGVGFLLGLLL   91 (94)
T ss_pred             HHHHHHHHHHHH
Confidence            777666665554

>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.53  E-value=1  Score=36.92  Aligned_cols=94  Identities=12%  Similarity=0.124  Sum_probs=75.9

Q ss_pred             hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHH
Q 032617           37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMH  116 (137)
Q Consensus        37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~  116 (137)
                      .++.+.+.+ .+-+..+-++.+-...|..+-+.=|+-|+.=..=++.....+..+...|.++.+-=++..+.. -...|+
T Consensus       174 ~ieeR~q~I-~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~-~~ll~v  251 (269)
T KOG0811|consen  174 LIEEREQAI-EQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKK-CILLLV  251 (269)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCch-hhhhHH
Confidence            344444554 677888899999999999999999999999989999999999999999999998877777754 446677


Q ss_pred             HHHHHHHHHHHHHHHH
Q 032617          117 VVLFALFLFFILYMWS  132 (137)
Q Consensus       117 lil~~v~vffvly~l~  132 (137)
                      ++++++++++++|...
T Consensus       252 ~~~v~lii~l~i~~~~  267 (269)
T KOG0811|consen  252 GGPVGLIIGLIIAGIA  267 (269)
T ss_pred             HHHHHHHHHHHHHHhh
Confidence            7777777788877654

>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins

Probab=94.28  E-value=0.88  Score=34.41  Aligned_cols=56  Identities=23%  Similarity=0.260  Sum_probs=36.8

Q ss_pred             CCCchhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617           32 VAGSDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK   96 (137)
Q Consensus        32 ~~~~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~   96 (137)
                      .++.||+++.-|..  ...+..+.|.....+|+.++..+.+       +|+++....++..+.+.
T Consensus        35 ~~~~deldEEfD~~--ps~~~~~~lr~Rydrlr~va~rvQ~-------vlgd~At~gERl~alls   90 (156)
T PF08372_consen   35 SAHPDELDEEFDTF--PSSRPPDSLRMRYDRLRSVAGRVQN-------VLGDVATQGERLQALLS   90 (156)
T ss_pred             cCCcchhhhhhccc--ccccccHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHhhc
Confidence            34456666544443  2345677899999999999977654       67777776666555443

It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).

>PRK10884 SH3 domain-containing protein; Provisional

Probab=93.65  E-value=1.3  Score=34.78  Aligned_cols=44  Identities=7%  Similarity=0.138  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617           61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK  104 (137)
Q Consensus        61 ~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~  104 (137)
                      ....+....+.+++.+.+..+.+|+..-++....|..+..++..
T Consensus       114 ~~~~~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~  157 (206)
T PRK10884        114 NTWNQRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDA  157 (206)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444455555555555555555555555555555555555443

>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=93.21  E-value=1.8  Score=35.62  Aligned_cols=81  Identities=12%  Similarity=0.093  Sum_probs=63.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFF  126 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vff  126 (137)
                      ..--+.+-+|.+....|+.+-.+=|.-|+.=..-|+.+.+.+.+|...|.+++..=++.-+. +.+.++.++++++++|+
T Consensus       198 ~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~-~~~~Llil~vv~lfv~l  276 (283)
T COG5325         198 KNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKC-RFYLLLILLVVLLFVSL  276 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccc-hhhHHHHHHHHHHHHHH
Confidence            44567777888888888887777777788777788888888888888888888888777774 57777778888877776


Q ss_pred             HH
Q 032617          127 IL  128 (137)
Q Consensus       127 vl  128 (137)
                      ++
T Consensus       277 ~~  278 (283)
T COG5325         277 IK  278 (283)
T ss_pred             HH
Confidence            64

>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway

Probab=92.91  E-value=2  Score=29.11  Aligned_cols=78  Identities=23%  Similarity=0.311  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHH---HHHHHhhcCCc-hhHHHHHHHHHHHHHHHHHH
Q 032617           60 VKQLRNVAQEIHSEASFQKDFLDQLQ---MTLIKAQAGVKNNMRR---LNKSIVKHGSN-HIMHVVLFALFLFFILYMWS  132 (137)
Q Consensus        60 V~~LK~va~~I~~Ev~~Qn~lLD~l~---~~~d~~~~~L~~t~~r---l~~v~~~~~~~-~~~~lil~~v~vffvly~l~  132 (137)
                      ...|+.....+.+|++.-..-++.|.   ..+.++.+.+......   =++++++=... ..=.+++++.++||++-++|
T Consensus         7 T~~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~D~~li~~~~~~f~~~v~y   86 (92)
T PF03908_consen    7 TESLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKTDRILIFFAFLFFLLVVLY   86 (92)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence            34555555666666665555444444   3333333333332222   22233321111 11235556666666666666


Q ss_pred             HHhcC
Q 032617          133 KMFRR  137 (137)
Q Consensus       133 k~~~~  137 (137)
                      =++||
T Consensus        87 I~~rR   91 (92)
T PF03908_consen   87 ILWRR   91 (92)
T ss_pred             Hhhhc
Confidence            55554

>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea

Probab=92.73  E-value=1.2  Score=29.44  Aligned_cols=58  Identities=19%  Similarity=0.265  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHh
Q 032617           73 EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMF  135 (137)
Q Consensus        73 Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~  135 (137)
                      |-.+=++-||++++.++.+...+-...+|   =+  +..-+++|-+++.+++|+++..+.++|
T Consensus        13 ~~~~i~~rLd~iEeKvEf~~~Ei~Qr~Gk---ki--GRDiGIlYG~v~Glii~~~~~~l~~~~   70 (70)
T PF04210_consen   13 DFNEIMKRLDEIEEKVEFTNAEIAQRAGK---KI--GRDIGILYGLVIGLIIFIIYIVLSSMF   70 (70)
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHHHhH---Hh--hhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33444456777777777666655433221   11  124578888888777777766666543

This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane

>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.71  E-value=1.6  Score=36.16  Aligned_cols=67  Identities=16%  Similarity=0.253  Sum_probs=43.8

Q ss_pred             hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617           37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK  104 (137)
Q Consensus        37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~  104 (137)
                      .+|.+...+ +--+-.+.+|++--.+|-++-..=++-+..-....|+.+-.++.+...|.+...++..
T Consensus       221 Y~Q~R~~~~-q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vSS  287 (311)
T KOG0812|consen  221 YVQERAKTM-QNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVSS  287 (311)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhcc
Confidence            445555444 4456677777777766666555555555555567777777888888888777777743

>PHA02650 hypothetical protein; Provisional

Probab=91.84  E-value=0.39  Score=32.40  Aligned_cols=57  Identities=9%  Similarity=0.012  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHH---hhcCCchhHHH---HHHHHHHHHHHHHHHHHhcC
Q 032617           81 LDQLQMTLIKAQAGVKNNMRRLNKSI---VKHGSNHIMHV---VLFALFLFFILYMWSKMFRR  137 (137)
Q Consensus        81 LD~l~~~~d~~~~~L~~t~~rl~~v~---~~~~~~~~~~l---il~~v~vffvly~l~k~~~~  137 (137)
                      |..-+++|++--+-++.++..=+...   +++.+..|+++   +++++++.|++++.+|..||
T Consensus        13 msS~DdDFnnFI~VVkSVLtD~~~~~~~~~~~~~~~~~~~ii~i~~v~i~~l~~flYLK~~~r   75 (81)
T PHA02650         13 MSSTDDDFNNFIDVVKSVLSDEDGSKKTIKSVSWFNGQNFIFLIFSLIIVALFSFFVFKGYTR   75 (81)
T ss_pred             cCCcHHHHHHHHHHHHHHHcCCCCccccccccCCchHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34446677776666666654421122   22223333322   22334444556666676553

>PF11902 DUF3422: Protein of unknown function (DUF3422); InterPro: IPR021830 This family of proteins are functionally uncharacterised

Probab=91.75  E-value=4.7  Score=35.02  Aligned_cols=56  Identities=13%  Similarity=0.229  Sum_probs=41.7

Q ss_pred             hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617           49 LDDEITGLRSQVKQLRN-VAQEIHSEASFQKD-FLDQLQMTLIKAQAGVKNNMRRLNKS  105 (137)
Q Consensus        49 qD~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~-lLD~l~~~~d~~~~~L~~t~~rl~~v  105 (137)
                      -.++++.|+.+|.+.-+ +-..|.=+++.||. ||..|+.- .+.+-+|..|..-+.-+
T Consensus       310 ~~~R~~~Ls~rv~Ra~~LLRTrVdv~le~QN~~LL~SM~rR-a~lQLrLQqtVEGLSVv  367 (420)
T PF11902_consen  310 VERRQEDLSRRVARATDLLRTRVDVELEQQNQDLLASMDRR-ARLQLRLQQTVEGLSVV  367 (420)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhHHHH
Confidence            46788889999988887 66778888888887 88888765 35666777776655443

This protein is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 426 to 444 amino acids in length.

>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function

Probab=91.66  E-value=3.4  Score=30.20  Aligned_cols=62  Identities=11%  Similarity=0.189  Sum_probs=51.0

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      -++--+++|.|..++...+.++..|.+||.+=..-++.+..+++..+..+..--.||..+-.
T Consensus        63 KkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~  124 (126)
T PF07889_consen   63 KKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE  124 (126)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            45567888899999999999999999999888888888888888888888877777766543

The region featured in this family is approximately 100 amino acids long.

>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells

Probab=91.39  E-value=2.7  Score=32.26  Aligned_cols=62  Identities=16%  Similarity=0.168  Sum_probs=55.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      .+.+..+..|...+..|+.=-.+...|+++.++.++.+.|.+....-.+.-.-.++.++-..
T Consensus       112 ~~~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~E  173 (194)
T PF08614_consen  112 SEKERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEE  173 (194)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            67888999999999999998899999999999999999999999999988888888887764

In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.

>PRK00846 hypothetical protein; Provisional

Probab=91.22  E-value=2.7  Score=28.18  Aligned_cols=51  Identities=6%  Similarity=-0.000  Sum_probs=43.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNN   98 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t   98 (137)
                      +-+++++.|..++.-.-..-...++.|-.|...+|.|...+.....+|+..
T Consensus        10 ~le~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~   60 (77)
T PRK00846         10 ALEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV   60 (77)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            457899999999999999888999999999999999888887777776654

>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function

Probab=90.82  E-value=2.6  Score=29.76  Aligned_cols=49  Identities=18%  Similarity=0.211  Sum_probs=31.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK   96 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~   96 (137)
                      .|.++++.|.++|..+-..=.....|++.|.+.|+.+...+.+-..+|.
T Consensus        50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD   98 (102)
T PF01519_consen   50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLD   98 (102)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4455666666666666666666666777777777777766666665554

It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.

>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function

Probab=90.69  E-value=2.4  Score=27.45  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=40.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617           50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM   99 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~   99 (137)
                      +++++.|..++.-+-..-..+++.|-.|...||.|...+.....+|+...
T Consensus         3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~   52 (69)
T PF04102_consen    3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE   52 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            67899999999999988889999999999999999988888887777643

It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.

>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.52  E-value=2.4  Score=33.66  Aligned_cols=78  Identities=10%  Similarity=0.173  Sum_probs=37.3

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHH
Q 032617           53 ITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMW  131 (137)
Q Consensus        53 Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l  131 (137)
                      ++.+.+.+..++. ++..|.+ +-.-++.|+.+++.-++....=+...+..+.+...+-...++..++|.++++|.++++
T Consensus       136 ~~~~n~el~~v~~im~~nied-vl~rg~~l~~l~~~~s~l~~~s~~y~~~a~~in~~sl~~~~aa~~~~~~~l~f~~~f~  214 (216)
T KOG0862|consen  136 LLKLNQELQDVQRIMVENLED-VLQRGEVLNALSSMASELSSESRKYPKTAKGINRKSLIRKYAAYVVFFVLLLFYVRFI  214 (216)
T ss_pred             HHHHHHHHHHHHHHHHHhHHH-HHhhchHHHhhhhhhhcccHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444444444444 4555544 4445566666665555544444444444444444432334444444444444444443

>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G

Probab=90.33  E-value=3.1  Score=27.44  Aligned_cols=56  Identities=18%  Similarity=0.236  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617           73 EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSK  133 (137)
Q Consensus        73 Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k  133 (137)
                      |-++=++-||++++.++.+...+.+..++   =.  +..-+++|-+++.+++|.++-.++.
T Consensus        13 d~~~i~~rLd~iEeKVEf~~~E~~Qr~Gk---k~--GRDiGIlYG~viGlli~~~~~~l~~   68 (70)
T TIGR01149        13 EFNEVMKRLDEIEEKVEFVNGEVAQRIGK---KV--GRDIGILYGLVIGLILFLIYILLSS   68 (70)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH---Hh--hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34444556777777777666655433221   11  1234677776666655544444443

coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.

>PRK00736 hypothetical protein; Provisional

Probab=89.84  E-value=3.8  Score=26.60  Aligned_cols=48  Identities=15%  Similarity=0.198  Sum_probs=39.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617           50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN   97 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~   97 (137)
                      +++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus         4 e~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~   51 (68)
T PRK00736          4 EERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467999999999998888899999999999998888777777666654

>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.48  E-value=7.1  Score=32.39  Aligned_cols=92  Identities=13%  Similarity=0.164  Sum_probs=54.2

Q ss_pred             chhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcC-Cch
Q 032617           35 SDEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHG-SNH  113 (137)
Q Consensus        35 ~~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~-~~~  113 (137)
                      -.++|.+.+.+ .+-+..+.+|++--..+-.+-..=++-|+.=..-..+-.+.++.+.+.++++.+    .-+++. +..
T Consensus       198 l~Eiq~Rh~~i-k~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~----~qkkaRK~k~  272 (297)
T KOG0810|consen  198 LAEIQERHDEI-KKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVK----YQKKARKWKI  272 (297)
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHhhhcee
Confidence            35777777766 677888888887776666666555555655555555566666666666666633    333333 333


Q ss_pred             hHHHHHHHHHHHHHHHHH
Q 032617          114 IMHVVLFALFLFFILYMW  131 (137)
Q Consensus       114 ~~~lil~~v~vffvly~l  131 (137)
                      +|+++++++++++++|+.
T Consensus       273 i~ii~~iii~~v~v~~i~  290 (297)
T KOG0810|consen  273 IIIIILIIIIVVLVVVIV  290 (297)
T ss_pred             eeehHHHHHHHHHhhhhc
Confidence            444444444444444443

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=88.63  E-value=5.3  Score=26.45  Aligned_cols=60  Identities=20%  Similarity=0.249  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 032617           72 SEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSKMFR  136 (137)
Q Consensus        72 ~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k~~~  136 (137)
                      +|.++-++-||+++..++.+...+-   +|+.+=..  ..-+++|-+++.++++.+.-.+.+.|+
T Consensus        15 ~dfne~~kRLdeieekvef~~~Ev~---Qr~GkkiG--RDIGILYGlVIGlil~~i~~~l~~~~~   74 (75)
T COG4064          15 DDFNEIHKRLDEIEEKVEFVNGEVY---QRIGKKIG--RDIGILYGLVIGLILCMIYILLGVAFR   74 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHH---HHHHHHhc--chHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4556667778888887777766543   33333222  245677766666666555555555443

>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA)

Probab=88.31  E-value=9.4  Score=30.86  Aligned_cols=21  Identities=5%  Similarity=0.053  Sum_probs=11.5

Q ss_pred             hhHHHHHHHHHHHHHHHHHHH
Q 032617          113 HIMHVVLFALFLFFILYMWSK  133 (137)
Q Consensus       113 ~~~~lil~~v~vffvly~l~k  133 (137)
                      ++++++++.+++.+++|+++|
T Consensus       293 gy~~~l~~m~~i~~~~~~~fk  313 (318)
T TIGR00383       293 GYPAVLIVMAVIALGPLIYFR  313 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            444455555555555666665

The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.

>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional

Probab=88.03  E-value=6.2  Score=26.52  Aligned_cols=56  Identities=11%  Similarity=0.183  Sum_probs=29.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchhHHHHHHHHHHHHHHHHHHH
Q 032617           73 EASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHIMHVVLFALFLFFILYMWSK  133 (137)
Q Consensus        73 Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~~~lil~~v~vffvly~l~k  133 (137)
                      |-++=++-||++++.++.+...+.+..++   =.  +..-+++|-+++.+++|++.-.+..
T Consensus        16 d~~~i~~rLD~iEeKVEftn~Ei~Qr~Gk---kv--GRDiGIlYG~viGlli~~i~~~~~~   71 (77)
T PRK01026         16 DFKEIQKRLDEIEEKVEFTNAEIFQRIGK---KV--GRDIGILYGLVIGLLIVLVYIILSP   71 (77)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhH---Hh--hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444556777777776666655432221   11  1235677766666665555444443

>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function

Probab=87.96  E-value=7.2  Score=27.24  Aligned_cols=46  Identities=22%  Similarity=0.126  Sum_probs=39.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQ   92 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~   92 (137)
                      .|+|.++..|.+--...++-=..|.+-+..|+...+.|+-.||+..
T Consensus         7 ~e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~   52 (98)
T PF11166_consen    7 HEHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEIN   52 (98)
T ss_pred             hhHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHH
Confidence            3788888888888888888888999999999999999999998843

It has a highly conserved sequence.

>PRK00295 hypothetical protein; Provisional

Probab=87.66  E-value=5.7  Score=25.74  Aligned_cols=48  Identities=15%  Similarity=0.218  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617           50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN   97 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~   97 (137)
                      +++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus         4 e~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~   51 (68)
T PRK00295          4 EERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE   51 (68)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457889999998888888888999999998888888777777666655

>PF07340 Herpes_IE1: Cytomegalovirus IE1 protein; InterPro: IPR010855 Expression from a human cytomegalovirus early promoter (E1

Probab=87.60  E-value=5.7  Score=34.09  Aligned_cols=100  Identities=19%  Similarity=0.119  Sum_probs=61.6

Q ss_pred             CCCCCCCCCCCCCCCCCCCCCC----------------------CCCCCchhhHhhhcchhHhhHHHHHH-HHHHHHHHH
Q 032617            8 GGAGGPFYGGAAPYRSREGLTT----------------------RPVAGSDEIQLRIDPVNADLDDEITG-LRSQVKQLR   64 (137)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~g~~~----------------------r~~~~~~~~q~~~~~~~~eqD~~Ld~-L~~~V~~LK   64 (137)
                      +||..++. +..|.+..|...+                      =|.++.+.++.-.+.++..+|.-... +..-|.++|
T Consensus        13 ~~p~~gps-~k~pr~e~pv~~A~~fLek~l~~E~~~~lsLGDPLf~~~~~~~~kt~e~i~~e~~~~p~~~~~q~lv~QiK   91 (392)
T PF07340_consen   13 AGPDPGPS-PKMPRPEDPVTRAVQFLEKMLADETNTQLSLGDPLFPDVSEDPFKTFEDIINECDDNPGKDVLQELVKQIK   91 (392)
T ss_pred             CCCCCCCC-CCCCCCCChHHHHHHHHHHHHHHHHhcccccCCCCCCCCCCCchhhHHHHHhcCCCChHHHHHHHHHHHHH
Confidence            77777766 5667665554211                      12344556665566665566666666 466666665


Q ss_pred             HHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           65 NVAQEIHSEASFQ-----KDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        65 ~va~~I~~Ev~~Q-----n~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      ---..-+.|+.+|     |++=..+...|...++.|++++.-++++...
T Consensus        92 lrv~~~r~~~k~~~l~qy~~~r~~~~~~F~~i~~~l~n~~~lL~k~~ep  140 (392)
T PF07340_consen   92 LRVARNRTEIKEQMLKQYNQIRMVFIGKFNDIQGGLQNAIDLLNKVMEP  140 (392)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            5344445555544     3344566677888888888888888888763

7) has been shown to be activated in trans by the IE2 gene product. Although the IE1 gene product alone had no effect on this early viral promoter, maximal early promoter activity was detected when both IE1 and IE2 gene products were present []. The IE1 protein from cytomegalovirus is also known as UL123.; GO: 0050792 regulation of viral reproduction, 0042025 host cell nucleus

>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]

Probab=87.41  E-value=4.3  Score=32.34  Aligned_cols=66  Identities=18%  Similarity=0.251  Sum_probs=38.0

Q ss_pred             HHHHHHHHHH-HHHHHHH---HHHHHHhhhhHHHHHHHHHHHhhcC--CchhH--HHHHHHHHHHHHHHHHHHH
Q 032617           69 EIHSEASFQK-DFLDQLQ---MTLIKAQAGVKNNMRRLNKSIVKHG--SNHIM--HVVLFALFLFFILYMWSKM  134 (137)
Q Consensus        69 ~I~~Ev~~Qn-~lLD~l~---~~~d~~~~~L~~t~~rl~~v~~~~~--~~~~~--~lil~~v~vffvly~l~k~  134 (137)
                      .|-.|-++=. ++|.+|.   +...++...|..+...+.+-.+.=.  .+..|  .+++.++++.+++.+++.+
T Consensus       142 Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~nk~~~~aii~~l~~~il~il  215 (220)
T KOG1666|consen  142 RIALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIRNKFTLTAIIALLVLAILLIL  215 (220)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444332 3788887   5677888888888887777666311  22333  2444555555555555544

>PRK02119 hypothetical protein; Provisional

Probab=86.97  E-value=6.7  Score=25.79  Aligned_cols=51  Identities=20%  Similarity=0.301  Sum_probs=41.2

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN   97 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~   97 (137)
                      ..-+++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus         5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~   55 (73)
T PRK02119          5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD   55 (73)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345789999999999988888889999999988888888777666665544

>PHA02844 putative transmembrane protein; Provisional

Probab=86.82  E-value=0.79  Score=30.59  Aligned_cols=21  Identities=14%  Similarity=0.009  Sum_probs=11.7

Q ss_pred             HHHHHHHHHHHhhhhHHHHHH
Q 032617           81 LDQLQMTLIKAQAGVKNNMRR  101 (137)
Q Consensus        81 LD~l~~~~d~~~~~L~~t~~r  101 (137)
                      |..-+++|++--+-++.++..
T Consensus        13 msS~DdDFnnFI~vVksVLtd   33 (75)
T PHA02844         13 LSSENEDFNNFIDVVKSVLSD   33 (75)
T ss_pred             cCCchHHHHHHHHHHHHHHcC
Confidence            334456666666666555443

>PRK04325 hypothetical protein; Provisional

Probab=86.73  E-value=7  Score=25.75  Aligned_cols=48  Identities=23%  Similarity=0.284  Sum_probs=39.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617           50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN   97 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~   97 (137)
                      +++++.|..++.-+-..-..+++.|-.|.+.|+.|...+.....+|+.
T Consensus         8 e~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~   55 (74)
T PRK04325          8 EDRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD   55 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567999999999998888899999999999888888777666665544

>PRK02793 phi X174 lysis protein; Provisional

Probab=86.36  E-value=7.2  Score=25.55  Aligned_cols=50  Identities=14%  Similarity=0.156  Sum_probs=39.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN   97 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~   97 (137)
                      +-+++++.|..++.-+-..-..+++.|-.|.+-+|.|...+.....+|+.
T Consensus         5 ~~e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~   54 (72)
T PRK02793          5 SLEARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA   54 (72)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35688999999998888888888888888888888887776666655544

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=86.31  E-value=12  Score=28.20  Aligned_cols=91  Identities=19%  Similarity=0.278  Sum_probs=59.6

Q ss_pred             hhhHhhhcchhHhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCchh
Q 032617           36 DEIQLRIDPVNADLDDEITGLRSQVKQL-RNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNHI  114 (137)
Q Consensus        36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~L-K~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~~  114 (137)
                      +.++..++.++++-.+.++.+...++-- ..-=..|.+|...++.-+.+++..++.--+.|+..+..++-=.-+    |.
T Consensus        83 e~L~~eie~l~~~L~~ei~~l~a~~klD~n~eK~~~r~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~~~lr----~~  158 (177)
T PF07798_consen   83 EKLQREIEKLRQELREEINKLRAEVKLDLNLEKGRIREEQAKQELKIQELNNKIDTEIANLRTEIESLKWDTLR----WL  158 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH
Confidence            4667777777777666777777766522 222237888888888889999999998888888888776554443    33


Q ss_pred             HHHHHHHHHHHHHHHH
Q 032617          115 MHVVLFALFLFFILYM  130 (137)
Q Consensus       115 ~~lil~~v~vffvly~  130 (137)
                      .-+|+.++.+.+-+|.
T Consensus       159 ~g~i~~~~a~~la~~r  174 (177)
T PF07798_consen  159 VGVIFGCVALVLAILR  174 (177)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            4344444443333333

>PRK04406 hypothetical protein; Provisional

Probab=86.30  E-value=7.5  Score=25.73  Aligned_cols=50  Identities=22%  Similarity=0.296  Sum_probs=39.8

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKN   97 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~   97 (137)
                      .-+++++.|..++.-+-..-..+++.|-.|.+-||.|...+.....+|+.
T Consensus         8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~   57 (75)
T PRK04406          8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN   57 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            34688999999999888888888888888988888888777666555543

>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis

Probab=84.67  E-value=9.3  Score=25.35  Aligned_cols=52  Identities=12%  Similarity=0.183  Sum_probs=32.6

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM   99 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~   99 (137)
                      .|-|+--+.+.+.+..+-+=+..|.+ +.+.-+-|.+-...|.+...+|++.+
T Consensus        10 ~~v~~v~~im~~Ni~~ll~Rge~L~~-L~~kt~~L~~~a~~F~k~a~~l~r~~   61 (89)
T PF00957_consen   10 EQVEEVKNIMRENIDKLLERGEKLEE-LEDKTEELSDNAKQFKKNAKKLKRKM   61 (89)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHcCchHHH-HHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            44455555555555555555555543 66666677777777777777777666

Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....

>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra []

Probab=84.58  E-value=4.8  Score=26.92  Aligned_cols=50  Identities=20%  Similarity=0.298  Sum_probs=39.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQE---IHSEASFQKDFLDQLQMTLIKAQAGVK   96 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~---I~~Ev~~Qn~lLD~l~~~~d~~~~~L~   96 (137)
                      .+=|+..|.|...|..++.--.+   |.+-++.|..-|+++++.+++-..-|.
T Consensus        14 k~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL~   66 (75)
T PF05531_consen   14 KAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDILN   66 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            56789999999999988885555   778888888888888887777665553

; GO: 0019028 viral capsid

>PRK10404 hypothetical protein; Provisional

Probab=83.76  E-value=12  Score=26.07  Aligned_cols=85  Identities=8%  Similarity=-0.015  Sum_probs=44.3

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhhHHHHHH----HHHHHhhcC---CchhHHHHH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKD-FLDQLQMTLIKAQAGVKNNMRR----LNKSIVKHG---SNHIMHVVL  119 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~-lLD~l~~~~d~~~~~L~~t~~r----l~~v~~~~~---~~~~~~lil  119 (137)
                      +.++-.++|..-+..+..+-..-.++..++.+ +=+.++..++.+..+|..+...    .+.......   .-+.|..|.
T Consensus         6 ~~~~l~~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~~~~~~~~~k~aa~~td~yV~e~Pw~avG   85 (101)
T PRK10404          6 GDTRIDDDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQASDSYYYRAKQAVYRADDYVHEKPWQGIG   85 (101)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence            44555555555555555555555555544433 3344555555555544443332    233332211   125566777


Q ss_pred             HHHHHHHHHHHHH
Q 032617          120 FALFLFFILYMWS  132 (137)
Q Consensus       120 ~~v~vffvly~l~  132 (137)
                      ++..+-|++=+++
T Consensus        86 iaagvGlllG~Ll   98 (101)
T PRK10404         86 VGAAVGLVLGLLL   98 (101)
T ss_pred             HHHHHHHHHHHHH
Confidence            7777766666664

>PF15106 TMEM156: TMEM156 protein family

Probab=83.29  E-value=1.5  Score=34.84  Aligned_cols=25  Identities=20%  Similarity=0.493  Sum_probs=19.8

Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHhc
Q 032617          112 NHIMHVVLFALFLFFILYMWSKMFR  136 (137)
Q Consensus       112 ~~~~~lil~~v~vffvly~l~k~~~  136 (137)
                      +-.||+.+++|++|+|+.++.|++.
T Consensus       175 KITWYvLVllVfiflii~iI~KIle  199 (226)
T PF15106_consen  175 KITWYVLVLLVFIFLIILIIYKILE  199 (226)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4578888888888888888888753

>PF15188 CCDC-167: Coiled-coil domain-containing protein 167

Probab=83.02  E-value=12  Score=25.49  Aligned_cols=26  Identities=19%  Similarity=0.199  Sum_probs=18.5

Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           83 QLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        83 ~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      ++++.+......+.+-=+.++.+-+.
T Consensus        40 ~lE~E~~~l~~~l~~~E~eL~~LrkE   65 (85)
T PF15188_consen   40 SLEKELNELKEKLENNEKELKLLRKE   65 (85)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHh
Confidence            45577777777777777777777664

>PHA02819 hypothetical protein; Provisional

Probab=82.52  E-value=2.6  Score=27.82  Aligned_cols=26  Identities=8%  Similarity=-0.055  Sum_probs=17.1

Q ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           81 LDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        81 LD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      |..-+++|++--+-++.++.. +....
T Consensus        13 msS~DdDFnnFI~VVksVLtd-~s~~~   38 (71)
T PHA02819         13 MSSSDDDFNNFINVVKSVLNN-ENYNK   38 (71)
T ss_pred             hCCchhHHHHHHHHHHHHHcC-CCCcc
Confidence            445577888877777777776 44333

>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology

Probab=82.41  E-value=23  Score=33.00  Aligned_cols=7  Identities=0%  Similarity=0.453  Sum_probs=2.5

Q ss_pred             HHHHHHH
Q 032617           61 KQLRNVA   67 (137)
Q Consensus        61 ~~LK~va   67 (137)
                      ++++++.
T Consensus       342 ~~~~~ip  348 (806)
T PF05478_consen  342 SRFNDIP  348 (806)
T ss_pred             HHHHHHH
Confidence            3333333

Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane

>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP

Probab=82.15  E-value=10  Score=23.95  Aligned_cols=38  Identities=26%  Similarity=0.351  Sum_probs=24.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 032617           50 DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMT   87 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~   87 (137)
                      ...++.|++-|..+|.=.....+|...-|.-||++...
T Consensus        16 ~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a~s   53 (56)
T PF04728_consen   16 NSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIAQS   53 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhh
Confidence            55566666666666666666666777667666665543

The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.

>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins

Probab=82.15  E-value=1.6  Score=33.28  Aligned_cols=20  Identities=40%  Similarity=0.557  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhc
Q 032617          117 VVLFALFLFFILYMWSKMFR  136 (137)
Q Consensus       117 lil~~v~vffvly~l~k~~~  136 (137)
                      +|++++.+++++|+++|.+|
T Consensus        99 ~Vl~g~s~l~i~yfvir~~R  118 (163)
T PF06679_consen   99 YVLVGLSALAILYFVIRTFR  118 (163)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            56667777888999999987

Their function is unknown.

>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown

Probab=81.71  E-value=1.7  Score=27.76  Aligned_cols=18  Identities=11%  Similarity=0.495  Sum_probs=9.7

Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 032617          117 VVLFALFLFFILYMWSKM  134 (137)
Q Consensus       117 lil~~v~vffvly~l~k~  134 (137)
                      +++.++++|+++|++..+
T Consensus        41 i~~~~~i~~l~v~~~~~~   58 (59)
T PF09889_consen   41 IFFGIFILFLAVWIFMTF   58 (59)
T ss_pred             HHHHHHHHHHHHHHHHHh
Confidence            344444555666666654

They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.

>PHA03054 IMV membrane protein; Provisional

Probab=81.56  E-value=2.3  Score=28.16  Aligned_cols=21  Identities=14%  Similarity=-0.050  Sum_probs=12.4

Q ss_pred             HHHHHHHHHHhhhhHHHHHHH
Q 032617           82 DQLQMTLIKAQAGVKNNMRRL  102 (137)
Q Consensus        82 D~l~~~~d~~~~~L~~t~~rl  102 (137)
                      ..-+++|++--+-++.++..=
T Consensus        14 ss~d~Df~~Fi~vV~sVl~dk   34 (72)
T PHA03054         14 GSPEDDLTDFIEIVKSVLSDE   34 (72)
T ss_pred             CCchHHHHHHHHHHHHHHcCC
Confidence            334667776666666665543

>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]

Probab=81.54  E-value=27  Score=28.45  Aligned_cols=89  Identities=9%  Similarity=0.190  Sum_probs=48.5

Q ss_pred             hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCc-hhH
Q 032617           37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSN-HIM  115 (137)
Q Consensus        37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~-~~~  115 (137)
                      +.|.+.+.+ ..-++.+.+|.+-..-+-++-..=..-|+--++-+.+-..++.....-+.++.+-....-++.=.| ++|
T Consensus       179 Evq~Rh~~i-kkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRkkki~c~gI~  257 (280)
T COG5074         179 EVQARHQEI-KKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARKKKIRCYGIC  257 (280)
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHhcceehhhhH
Confidence            556555443 344444444444444433333333333444455555666667777777777777666666665444 577


Q ss_pred             HHHHHHHHHHH
Q 032617          116 HVVLFALFLFF  126 (137)
Q Consensus       116 ~lil~~v~vff  126 (137)
                      ++|++++++|+
T Consensus       258 ~iii~viv~vv  268 (280)
T COG5074         258 FIIIIVIVVVV  268 (280)
T ss_pred             HHHHHHHHHHH
Confidence            66555544444

>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane

Probab=81.22  E-value=2.2  Score=31.03  Aligned_cols=11  Identities=18%  Similarity=0.579  Sum_probs=4.9

Q ss_pred             HHHHHHHHHHH
Q 032617          124 LFFILYMWSKM  134 (137)
Q Consensus       124 vffvly~l~k~  134 (137)
                      ++|++|++.|.
T Consensus        81 Illi~y~irR~   91 (122)
T PF01102_consen   81 ILLISYCIRRL   91 (122)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            34444444443

Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.

>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]

Probab=80.81  E-value=28  Score=28.03  Aligned_cols=21  Identities=14%  Similarity=0.257  Sum_probs=10.6

Q ss_pred             HHHHhhhhHHHHHHHHHHHhh
Q 032617           88 LIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        88 ~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      .|...+.+..|-.|+.++.++
T Consensus       182 lDdl~~e~d~t~srl~~~~~~  202 (235)
T KOG3202|consen  182 LDDLDNEMDRTESRLDRVMKR  202 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            344445555555555555543

>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function

Probab=80.72  E-value=28  Score=27.99  Aligned_cols=45  Identities=22%  Similarity=0.284  Sum_probs=22.2

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 032617           46 NADLDDEITGLRSQVKQLRNVAQE-IHSEASFQKDFLDQLQMTLIK   90 (137)
Q Consensus        46 ~~eqD~~Ld~L~~~V~~LK~va~~-I~~Ev~~Qn~lLD~l~~~~d~   90 (137)
                      +.++|.+-..+..-.+.|+.-+.+ +..+...||+.++-+.+..++
T Consensus        63 ~~~qd~reK~~~~I~ssL~eTtkdf~~~~~k~~~dF~~~Lq~~Lk~  108 (230)
T PF03904_consen   63 EEKQDIREKNLKEIKSSLEETTKDFIDKTEKVHNDFQDILQDELKD  108 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344444444444444455553333 334555666666666554443

>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]

Probab=80.58  E-value=14  Score=24.50  Aligned_cols=50  Identities=20%  Similarity=0.244  Sum_probs=36.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVK   96 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~   96 (137)
                      .+-|+++.+|..++.-.-..=..+++-|.+|-..+|.+...++...++++
T Consensus         4 ~~lE~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~   53 (72)
T COG2900           4 MELEARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK   53 (72)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46688899999998877777777788788887777776666555554444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	137
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	5e-05
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	2e-04
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	3e-04
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	7e-04

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 Length = 87

 Score = 38.7 bits (90), Expect = 5e-05
 Identities = 10/62 (16%), Positives = 27/62 (43%)

Query: 43  DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRL 102
           D    ++D+ +  +   +  LR++A ++ +E   Q   +D++       +  +    +R 
Sbjct: 21  DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 80

Query: 103 NK 104
            K
Sbjct: 81  TK 82

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B Length = 66

 Score = 36.6 bits (85), Expect = 2e-04
 Identities = 9/62 (14%), Positives = 26/62 (41%)

Query: 43  DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRL 102
                ++D+ +  +   +  LR++A ++ +E   Q   +D++       +  +    +R 
Sbjct: 2   SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRA 61

Query: 103 NK 104
            K
Sbjct: 62  TK 63

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens} Length = 82

 Score = 36.3 bits (84), Expect = 3e-04
 Identities = 14/55 (25%), Positives = 27/55 (49%)

Query: 50  DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104
           D+++  +   +  L+N++Q I  E   Q   L+     L   Q+ + N M++L K
Sbjct: 18  DEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAK 72

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1 Length = 65

 Score = 35.1 bits (81), Expect = 7e-04
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 50  DDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK 104
           D  +  L S + + + + QEI +E   Q + +D L   +      ++   RR+  
Sbjct: 8   DAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTL 62

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	137
2nps_D	82	Syntaxin-6; vesicle fusion, snare complex, early e	99.79
1n7s_D	66	SNAP-25A; neuronal snare protein complex, four hel	99.75
1gl2_D	65	Syntaxin 8, vesicle transport V-snare protein VTI1	99.73
1sfc_D	87	Protein (SNAP-25B), protein (synaptobrevin 2); mem	99.7
1l4a_D	87	S-SNAP25 fusion protein; snare, snare complex, mem	99.62
3b5n_D	64	Protein transport protein SEC9; snare complex, syn	99.54
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	98.99
1jth_B	77	Syntaxin 1A; coiled-coil, polar layer, endocytosis	97.64
2nps_B	71	Syntaxin 13, vesicle-associated membrane protein 4	97.38
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	97.27
3b5n_B	69	Protein SSO1; snare complex, syntaxin, synaptobrev	97.04
1gl2_B	65	Syntaxin 7; membrane protein, membrane fusion prot	97.0
1sfc_B	83	Protein (syntaxin 1A), protein (synaptobrevin 2);	96.97
1n7s_B	68	Syntaxin 1A; neuronal snare protein complex, four	96.85
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	95.18
2kog_A	119	Vesicle-associated membrane protein 2; synaptobrev	94.28
1n7s_C	79	SNAP-25A; neuronal snare protein complex, four hel	94.14
3hd7_B	109	Syntaxin-1A; membrane protein, coiled-coil, 4-heli	93.38
1dn1_B	267	Syntaxin 1A, syntaxin binding protein 1; protein-p	89.41
1gl2_C	65	VTI1B, vesicle transport V-snare protein VTI1-like	89.13
3hd7_A	91	Vesicle-associated membrane protein 2; membrane pr	88.94
1nhl_A	54	Synaptosomal-associated protein 23; snare, coiled-	88.93
3efg_A	78	Protein SLYX homolog; xanthomonas campestris PV. c	88.22
2nps_C	81	Vesicle transport through interaction with T- snar	87.44
3c98_B	279	Syntaxin-1A; protein complex, alternative splicing	86.88
1l4a_C	83	S-SNAP25 fusion protein; snare, snare complex, mem	83.55

>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}

Probab=99.79  E-value=3.5e-19  Score=119.84  Aligned_cols=76  Identities=18%  Similarity=0.194  Sum_probs=61.0

Q ss_pred             hhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhcCCch
Q 032617           37 EIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKHGSNH  113 (137)
Q Consensus        37 ~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~~~~~  113 (137)
                      .+|.+.+.+ .|||+.||.|+++|++||++|.+||+||++||++||+|+++||++..+|+++++|++++++++++++
T Consensus         6 ~~q~Q~~~~-~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~   81 (82)
T 2nps_D            6 SMTGGNNMG-RMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR   81 (82)
T ss_dssp             -------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            345555554 7899999999999999999999999999999999999999999999999999999999999876543

>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B

Probab=99.75  E-value=5.9e-18  Score=109.33  Aligned_cols=65  Identities=14%  Similarity=0.258  Sum_probs=61.9

Q ss_pred             cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      +.+|.|||+.|+.|+++|++||++|.+||+||+.||++||++++.||++..+|+++++|++++++
T Consensus         2 d~~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll~   66 (66)
T 1n7s_D            2 SARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLG   66 (66)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHcC
Confidence            35689999999999999999999999999999999999999999999999999999999998763

>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.73  E-value=9.1e-18  Score=108.15  Aligned_cols=62  Identities=19%  Similarity=0.278  Sum_probs=53.8

Q ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           46 NADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        46 ~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      ..|||+.||.|+++|++||++|.+||+||+.||++||+++++||++..+|+++++|++++.+
T Consensus         4 ~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k   65 (65)
T 1gl2_D            4 MQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR   65 (65)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            37999999999999999999999999999999999999999999999999999999998864

>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1

Probab=99.70  E-value=6.1e-17  Score=109.99  Aligned_cols=66  Identities=15%  Similarity=0.276  Sum_probs=62.3

Q ss_pred             cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      +.++.|||+.||.|++.|++||++|.+||+||+.||++||+|++.+|++..+|+.+++|+++++++
T Consensus        21 d~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k   86 (87)
T 1sfc_D           21 DARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS   86 (87)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence            445689999999999999999999999999999999999999999999999999999999999875

>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=99.62  E-value=7.7e-16  Score=104.67  Aligned_cols=64  Identities=17%  Similarity=0.309  Sum_probs=60.7

Q ss_pred             chhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           44 PVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        44 ~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      .++.|||+.||.|++.|++||++|.+||+||+.||++||++++.+|++..+|+.+++|++++++
T Consensus        23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~   86 (87)
T 1l4a_D           23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLK   86 (87)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC-
T ss_pred             HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3468999999999999999999999999999999999999999999999999999999999876

>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}

Probab=99.54  E-value=2.9e-14  Score=91.85  Aligned_cols=62  Identities=15%  Similarity=0.240  Sum_probs=59.5

Q ss_pred             cchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617           43 DPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK  104 (137)
Q Consensus        43 ~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~  104 (137)
                      +.+|.|+|+-|+.|++.|++||++|.+||+||+.||++||.++...|++..++..+.+||++
T Consensus         2 d~~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~   63 (64)
T 3b5n_D            2 SEMELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG   63 (64)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cHHHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            45689999999999999999999999999999999999999999999999999999999986

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=98.99  E-value=9.6e-09  Score=71.97  Aligned_cols=83  Identities=13%  Similarity=0.251  Sum_probs=67.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh--cCCchhHHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK--HGSNHIMHVVLFALFL  124 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~--~~~~~~~~lil~~v~v  124 (137)
                      ++-++.+..|.+++..|.++-.++...|.+|.+++|.++++++.+...+..+.+.+++..+.  +..++.|+++++++++
T Consensus        17 ~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~~i~   96 (109)
T 3hd7_B           17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICCVIL   96 (109)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999988653  3334445444444444


Q ss_pred             HHHHH
Q 032617          125 FFILY  129 (137)
Q Consensus       125 ffvly  129 (137)
                      ++++.
T Consensus        97 ~~i~~  101 (109)
T 3hd7_B           97 GIIIA  101 (109)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            33333

>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B

Probab=97.64  E-value=0.00069  Score=44.10  Aligned_cols=62  Identities=15%  Similarity=0.245  Sum_probs=58.4

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      .+-.+.+..|.+++.-|.++-.++..-|.+|..+||.++..++.+...+..+...+.+..+.
T Consensus         6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~   67 (77)
T 1jth_B            6 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   67 (77)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999999999999999999884

>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=97.38  E-value=0.0021  Score=41.18  Aligned_cols=62  Identities=11%  Similarity=0.221  Sum_probs=57.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhc
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVKH  109 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~~  109 (137)
                      +-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+...|.+..+..
T Consensus         3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~q   64 (71)
T 2nps_B            3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQ   64 (71)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44678899999999999999999999999999999999999999999999999999888743

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=97.27  E-value=0.0044  Score=41.66  Aligned_cols=58  Identities=10%  Similarity=0.133  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           50 DDEITGLRSQVKQLRN-VAQEIHSEASFQK--DFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        50 D~~Ld~L~~~V~~LK~-va~~I~~Ev~~Qn--~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      ++.+..+...|...|. +..+|..-++...  +.|++-.+++.......+++.+++++-+.
T Consensus         4 ~d~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~~s~~F~~~A~~l~rkmw   64 (91)
T 3hd7_A            4 MRRLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   64 (91)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456666666776766 4555655454333  24555556666666677777777766554

>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1

Probab=97.04  E-value=0.01  Score=37.66  Aligned_cols=61  Identities=15%  Similarity=0.226  Sum_probs=56.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      .+-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.+.+..+
T Consensus         6 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~   66 (69)
T 3b5n_B            6 QARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK   66 (69)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4557789999999999999999999999999999999999999999999999999988766

>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=97.00  E-value=0.0063  Score=38.28  Aligned_cols=59  Identities=14%  Similarity=0.297  Sum_probs=54.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKS  105 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v  105 (137)
                      .+-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.|.+.
T Consensus         5 ~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA   63 (65)
T 1gl2_B            5 HERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRA   63 (65)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35567789999999999999999999999999999999999999999999999988764

>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B

Probab=96.97  E-value=0.012  Score=38.61  Aligned_cols=62  Identities=15%  Similarity=0.245  Sum_probs=58.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      .+-.+.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.+.+..+.
T Consensus        17 ~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~   78 (83)
T 1sfc_B           17 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY   78 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56678899999999999999999999999999999999999999999999999999998874

>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B

Probab=96.85  E-value=0.014  Score=36.84  Aligned_cols=60  Identities=15%  Similarity=0.274  Sum_probs=55.3

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI  106 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~  106 (137)
                      .+-++.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+.+.+.+..
T Consensus         8 ~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~   67 (68)
T 1n7s_B            8 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV   67 (68)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            456778999999999999999999999999999999999999999999999999988753

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=95.18  E-value=0.003  Score=44.58  Aligned_cols=54  Identities=11%  Similarity=0.182  Sum_probs=23.5

Q ss_pred             HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH---HHHHHHhhhhHHHHHHHHHHHh
Q 032617           53 ITGLRSQVKQLRN-VAQEIHSEASFQKDFLDQLQ---MTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        53 Ld~L~~~V~~LK~-va~~I~~Ev~~Qn~lLD~l~---~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      +..+...|...|. +..+|..=+ +-.+-||+|.   +++.......++..+++++-+.
T Consensus        35 l~~vq~evdeVk~IM~~NIdkvL-eRGEkLd~L~~KTe~L~~~S~~F~k~A~kl~rkmw   92 (119)
T 2kog_A           35 LQQTQAQVDEVVDIMRVNVDKVL-ERDQKLSELDDRADALQAGASQFETSAAKLKRKYW   92 (119)
T ss_dssp             HHHSSHHHHHHHHHHHHHHHHHH-CCCCSSCCCCSCCSCCCSSSHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-HcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444 233444323 2333334333   3444444555555556554443

>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}

Probab=94.28  E-value=0.0084  Score=42.26  Aligned_cols=50  Identities=18%  Similarity=0.218  Sum_probs=20.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNN   98 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t   98 (137)
                      |-|+--+.+.+.+..+-+=+..|. ++.+.-+-|.+-...|.+...+|++.
T Consensus        41 evdeVk~IM~~NIdkvLeRGEkLd-~L~~KTe~L~~~S~~F~k~A~kl~rk   90 (119)
T 2kog_A           41 QVDEVVDIMRVNVDKVLERDQKLS-ELDDRADALQAGASQFETSAAKLKRK   90 (119)
T ss_dssp             HHHHHHHHHHHHHHHHHCCCCSSC-CCCSCCSCCCSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHcccHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444443333332222 23333333444455555555555544

>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A

Probab=94.14  E-value=0.7  Score=29.96  Aligned_cols=61  Identities=11%  Similarity=0.096  Sum_probs=49.1

Q ss_pred             HhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHh
Q 032617           47 ADLDDEITGLRSQVKQ---LRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIV  107 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~---LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~  107 (137)
                      .-.|+.++.+...++.   -+.++..+-.++..|.+-|+..+..++....-|+.+-+.|+.|.|
T Consensus        16 ~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~k   79 (79)
T 1n7s_C           16 QLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLGK   79 (79)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhcC
Confidence            4456666666655554   445888899999999999999999999999999999998887753

>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B

Probab=93.38  E-value=1.2  Score=30.27  Aligned_cols=72  Identities=14%  Similarity=0.135  Sum_probs=56.4

Q ss_pred             hhhHhhhcchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           36 DEIQLRIDPVNADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        36 ~~~q~~~~~~~~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      .++|.+.+.+ .+-++.+.+|++-...+-.+-.+=|+-++.=..-.++..+.++.+...|+.+.+.=++--++
T Consensus        14 ~~i~eR~~eI-~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk   85 (109)
T 3hd7_B           14 SEIETRHSEI-IKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK   85 (109)
T ss_dssp             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            5777777766 67788888888888887777777777777777778889999999999999997766655554

>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B

Probab=89.41  E-value=0.081  Score=41.51  Aligned_cols=62  Identities=15%  Similarity=0.245  Sum_probs=50.1

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      .+-.+.+..|.+++.-|.++-.++..=|.+|..+||.++..++.+...+..+...|.+..+-
T Consensus       196 ~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~  257 (267)
T 1dn1_B          196 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY  257 (267)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677899999999999999999999999999999999999999999999999999887774

>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1

Probab=89.13  E-value=2.7  Score=26.00  Aligned_cols=59  Identities=15%  Similarity=0.201  Sum_probs=48.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSI  106 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~  106 (137)
                      +-.+.|..-...+.--..++..|-.++..|-+-|....+.++.++..|.++.+-|+.|.
T Consensus         6 ~t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~   64 (65)
T 1gl2_C            6 RATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS   64 (65)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence            34556666666677778899999999999999999999999999999999998877654

>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A

Probab=88.94  E-value=3.5  Score=27.12  Aligned_cols=50  Identities=16%  Similarity=0.195  Sum_probs=23.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHH
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNN   98 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t   98 (137)
                      |-|+--+.+.+.+..+-+=+..+.+ +.+.-+-|..-...|.+...+|++.
T Consensus        13 ev~evk~iM~~NI~kvL~RgekL~~-L~~kt~~L~~~s~~F~~~A~~l~rk   62 (91)
T 3hd7_A           13 QVDEVVDIMRVNVDKVLERDQKLSE-LDDRADALQAGASQFETSAAKLKRK   62 (91)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHccchHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344444444444444444444332 4444444455555566666655554

>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1

Probab=88.93  E-value=1.8  Score=25.87  Aligned_cols=44  Identities=11%  Similarity=0.165  Sum_probs=37.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Q 032617           61 KQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNK  104 (137)
Q Consensus        61 ~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~  104 (137)
                      .....++..+-.++..|.+-|+.++..++....-|+.+-+.|..
T Consensus        10 ~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~~   53 (54)
T 1nhl_A           10 IESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLTE   53 (54)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHhc
Confidence            34566788888999999999999999999999999998877653

>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}

Probab=88.22  E-value=2.5  Score=27.29  Aligned_cols=53  Identities=6%  Similarity=0.007  Sum_probs=42.5

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNM   99 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~   99 (137)
                      .+-+++++.|..++.-+-..-..+++.|-.|...||.|...+.....+++...
T Consensus        10 ~~le~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~~   62 (78)
T 3efg_A           10 QELEARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKVR   62 (78)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            45678999999999999888889999999999999999888888877776543

>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}

Probab=87.44  E-value=4.2  Score=26.22  Aligned_cols=61  Identities=11%  Similarity=0.156  Sum_probs=50.6

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           48 DLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      +..+.|..-...+.---.++..|-.|+..|-+-|....+.++.++.-|..+.+-|+.|.+.
T Consensus        16 rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr   76 (81)
T 2nps_C           16 RSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRR   76 (81)
T ss_dssp             HHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHH
Confidence            3344555555555566679999999999999999999999999999999999999998875

>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}

Probab=86.88  E-value=0.12  Score=39.09  Aligned_cols=62  Identities=15%  Similarity=0.245  Sum_probs=49.0

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhh
Q 032617           47 ADLDDEITGLRSQVKQLRNVAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLNKSIVK  108 (137)
Q Consensus        47 ~eqD~~Ld~L~~~V~~LK~va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~~v~~~  108 (137)
                      .+-.+.+..|...|..+..+..+|..-+.+|...+|+++..++.+...+..+...+.+..+.
T Consensus       208 ~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~  269 (279)
T 3c98_B          208 ETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKY  269 (279)
T ss_dssp             HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC---------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677899999999999999999999999999999999999999998888888877776664

>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1

Probab=83.55  E-value=3  Score=27.28  Aligned_cols=56  Identities=16%  Similarity=0.172  Sum_probs=40.7

Q ss_pred             hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Q 032617           48 DLDDEITGLRSQVKQLRN---VAQEIHSEASFQKDFLDQLQMTLIKAQAGVKNNMRRLN  103 (137)
Q Consensus        48 eqD~~Ld~L~~~V~~LK~---va~~I~~Ev~~Qn~lLD~l~~~~d~~~~~L~~t~~rl~  103 (137)
                      -.|+.++.-...++-...   ++..--.++..|.+-|+.++..+|....-|+.+-+.|.
T Consensus        21 ~~~esl~STrr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~   79 (83)
T 1l4a_C           21 VTDDSLESTRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLE   79 (83)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTT
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            355556665555544433   66677778999999999999999999888887766554

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00