Citrus Sinensis ID: 033223

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120----
Protein Sequence
MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW
Secondary Structure (PSIPRED)
ccccccccccccEEEEEEEcccEEEEEEEEEccEEEEEEEEcccccEEEEEEEccccccccccEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEEEEcccccEEEEEEcccEEEEEEEEccccEEEEEEEcccccccccccEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHHHHcccc
Coil and Loop (DISEMBL)
msvleqnfpVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHarkdadisvhptfsvsvifgkrdepMLVACARQLIEHisssgtsqpLVLSlglkdhsaETLKGIVSAVTENRLW
Flexible Loop (DISEMBL)
msvleqnfpvvqkklsvdlkrnKTDIIICSYDDHFLVIATQIGTMGTILHArkdadisvhPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIvsavtenrlw
Low Complexity Region (SEG)
MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW
Disordered region (IsUnstruct)
*********VVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHIS*******LVLSLGL**********I**********
Disordered Region (DISOPRED)
************KKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHA***********FSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW
Disordered Region (DISEMBL)
MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW
Disordered Region (DISPRO)
******NFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	124	2.2.26 [Sep-21-2011]
Q55G88	145	Proteasome assembly chape	yes	no	0.967	0.827	0.319	6e-12
Q2NKS3	122	Proteasome assembly chape	yes	no	0.798	0.811	0.278	2e-08
Q9CZH3	122	Proteasome assembly chape	yes	no	0.798	0.811	0.288	2e-08
Q9BT73	122	Proteasome assembly chape	yes	no	0.798	0.811	0.278	3e-08
A7SP74	135	Proteasome assembly chape	N/A	no	0.951	0.874	0.236	8e-05

>sp|Q55G88|PSMG3_DICDI Proteasome assembly chaperone 3 OS=Dictyostelium discoideum GN=psmG3 PE=3 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 2/122 (1%)

Query: 4   LEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARK-DADISVHPT 62
           +E+N PV  K LS  +    TDI I S+ D   +  +Q     T + A K D  +   P+
Sbjct: 25  IEKNHPVKSKVLSKKINNVDTDIAISSFADAIFITISQNQKFNTWIRASKSDGILLDEPS 84

Query: 63  FSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENR 122
           + +  + G   + +    ARQLIE+I  + +++ L+LS+ + D S +T K I+S + EN+
Sbjct: 85  YQIDTLLGNNQDVLFSIYARQLIENIGET-SNKSLMLSISITDKSKDTFKQILSTIFENK 143

Query: 123 LW 124
           +W
Sbjct: 144 VW 145

Chaperone protein which promotes assembly of the 20S proteasome. May cooperate with psmg1-psmg2 heterodimers to orchestrate the correct assembly of proteasomes.
Dictyostelium discoideum (taxid: 44689)

>sp|Q2NKS3|PSMG3_BOVIN Proteasome assembly chaperone 3 OS=Bos taurus GN=PSMG3 PE=2 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 24  TDIIICSYDDHFLVIATQIGTMGTILHARKD---ADISVHPTFSVSVIFGKRDEPMLVAC 80
           T ++  ++  H LV+ TQ+G MGT++        +D+   P  +  V+ GK DEP++   
Sbjct: 21  TQVVCTAFSSHILVVVTQLGKMGTLVSLEPSSVTSDVG-KPVLTTKVLLGK-DEPLVHVF 78

Query: 81  ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           A+ L+  +S    ++ ++L+L  KD S E +K +   +   ++W
Sbjct: 79  AKNLVAFVSQEAGNRAVLLALATKDKSMEAVKALQEVIQACQVW 122

Chaperone protein which promotes assembly of the 20S proteasome. May cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.

Bos taurus (taxid: 9913)

>sp|Q9CZH3|PSMG3_MOUSE Proteasome assembly chaperone 3 OS=Mus musculus GN=Psmg3 PE=1 SV=1

 Score = 57.8 bits (138), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 5/104 (4%)

Query: 24  TDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFSVSVIFGKRDEPMLVAC 80
           T ++  ++  H LV+ TQ G MGT++         DIS  P  +  V+ G +DEP++   
Sbjct: 21  TQVVCTAFSSHILVVVTQFGKMGTLVSLEPSNVANDIS-KPVLTTRVLLG-QDEPLIHVF 78

Query: 81  ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           A+ L+  +S    ++ ++L++ +KD S E LK +   +   ++W
Sbjct: 79  AKNLVAFVSQEAGNRAVLLAMAVKDKSMERLKALKEVIRLCQVW 122

Chaperone protein which promotes assembly of the 20S proteasome. May cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.

Mus musculus (taxid: 10090)

>sp|Q9BT73|PSMG3_HUMAN Proteasome assembly chaperone 3 OS=Homo sapiens GN=PSMG3 PE=1 SV=1

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 5/104 (4%)

Query: 24  TDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFSVSVIFGKRDEPMLVAC 80
           T ++  ++  H LV+ TQ G MGT++     +   D+S  P  +  V+ G +DEP++   
Sbjct: 21  TQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVS-KPVLTTKVLLG-QDEPLIHVF 78

Query: 81  ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           A+ L+  +S    ++ ++L++ +KD S E LK +   +   ++W
Sbjct: 79  AKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW 122

Chaperone protein which promotes assembly of the 20S proteasome. May cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.

Homo sapiens (taxid: 9606)

>sp|A7SP74|PSMG3_NEMVE Proteasome assembly chaperone 3 OS=Nematostella vectensis GN=psmg3 PE=3 SV=1

 Score = 45.8 bits (107), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 31/131 (23%), Positives = 64/131 (48%), Gaps = 13/131 (9%)

Query: 2   SVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHP 61
           + ++ + PV ++  ++ +    TD +   Y D  LV+ TQ    GT++   +D  ++  P
Sbjct: 3   AAIDGSLPVCRQSAAL-IDGVHTDFLASWYSDRILVLVTQFQKFGTLVSVTRDQPVA-RP 60

Query: 62  ----------TFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETL 111
                     TF+  V+ G  D P+     +Q+ + I+     +P+++++ L++HS E L
Sbjct: 61  DQAQGGTDSHTFTTKVLMGD-DLPIWHVYGQQIFKAINGEDGCKPVLVAIALQNHSPEIL 119

Query: 112 KGIVSAVTENR 122
           K I+  +   R
Sbjct: 120 KCILGQLESIR 130

Chaperone protein which promotes assembly of the 20S proteasome. May cooperate with psmg1-psmg2 heterodimers to orchestrate the correct assembly of proteasomes.

Nematostella vectensis (taxid: 45351)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
255567339	124	conserved hypothetical protein [Ricinus	0.959	0.959	0.806	3e-50
224055523	124	predicted protein [Populus trichocarpa]	0.959	0.959	0.773	6e-50
357463549	130	Proteasome assembly chaperone [Medicago	0.975	0.930	0.719	5e-46
217075512	130	unknown [Medicago truncatula] gi|3885117	0.975	0.930	0.710	3e-45
356509383	126	PREDICTED: proteasome assembly chaperone	0.943	0.928	0.726	3e-45
15241480	124	proteasome assembly chaperone 3 [Arabido	1.0	1.0	0.717	3e-45
297807487	124	hypothetical protein ARALYDRAFT_325939 [	1.0	1.0	0.717	7e-45
356518557	126	PREDICTED: uncharacterized protein LOC10	0.943	0.928	0.709	1e-44
449450101	124	PREDICTED: proteasome assembly chaperone	0.951	0.951	0.686	3e-43
116784105	123	unknown [Picea sitchensis] gi|116790636|	0.991	1.0	0.637	2e-41

>gi|255567339|ref|XP_002524649.1| conserved hypothetical protein [Ricinus communis] gi|223536010|gb|EEF37668.1| conserved hypothetical protein [Ricinus communis]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 96/119 (80%), Positives = 107/119 (89%)

Query: 6   QNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSV 65
           Q+FPV  KK SVD+K NKTDI+ICSYDDHFLVIATQI TMG+ILHARK+  +SVHPTF+V
Sbjct: 6   QHFPVPHKKFSVDIKGNKTDIVICSYDDHFLVIATQIETMGSILHARKEEGVSVHPTFNV 65

Query: 66  SVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           SVIFGKR+EPMLVACAR+LIEHIS+SG+S  LVLSLGLKDHS ETLKGIVSAV ENR W
Sbjct: 66  SVIFGKRNEPMLVACARKLIEHISNSGSSGALVLSLGLKDHSMETLKGIVSAVVENRSW 124

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224055523|ref|XP_002298521.1| predicted protein [Populus trichocarpa] gi|222845779|gb|EEE83326.1| predicted protein [Populus trichocarpa]

 Score =  201 bits (510), Expect = 6e-50,   Method: Compositional matrix adjust.
 Identities = 92/119 (77%), Positives = 109/119 (91%)

Query: 6   QNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSV 65
           Q+FPV  K+ SV +K NKTD++I  YDDHFLVIATQIG+MGTILHARKD  +S+HPTF+V
Sbjct: 6   QHFPVTHKECSVVIKGNKTDMVISGYDDHFLVIATQIGSMGTILHARKDESLSIHPTFNV 65

Query: 66  SVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           SVIFGKRDEPMLVACARQLIEHIS+SG+S+PLVLSLGL+DHS+ETL+G+VSAVT NR+W
Sbjct: 66  SVIFGKRDEPMLVACARQLIEHISTSGSSKPLVLSLGLQDHSSETLRGVVSAVTANRVW 124

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357463549|ref|XP_003602056.1| Proteasome assembly chaperone [Medicago truncatula] gi|357520335|ref|XP_003630456.1| Proteasome assembly chaperone [Medicago truncatula] gi|355491104|gb|AES72307.1| Proteasome assembly chaperone [Medicago truncatula] gi|355524478|gb|AET04932.1| Proteasome assembly chaperone [Medicago truncatula]

 Score =  187 bits (476), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 87/121 (71%), Positives = 103/121 (85%)

Query: 4   LEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTF 63
           L   FPV Q   S+++K NKT+III SY+DHF+V+ATQIG MGTILHARK+  +S+ PTF
Sbjct: 10  LTPKFPVSQLNFSIEIKGNKTEIIISSYEDHFMVVATQIGAMGTILHARKEEGMSISPTF 69

Query: 64  SVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRL 123
           +VSV+FGKRDEPMLVACARQLIEH++ SG S+PLVLSLGLKDHS ETLKGIVSAV + RL
Sbjct: 70  NVSVLFGKRDEPMLVACARQLIEHMTLSGVSKPLVLSLGLKDHSVETLKGIVSAVIDKRL 129

Query: 124 W 124
           W
Sbjct: 130 W 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217075512|gb|ACJ86116.1| unknown [Medicago truncatula] gi|388511701|gb|AFK43912.1| unknown [Medicago truncatula]

 Score =  185 bits (470), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 86/121 (71%), Positives = 102/121 (84%)

Query: 4   LEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTF 63
           L   FPV Q   S+++K NKT+III SY+ HF+V+ATQIG MGTILHARK+  +S+ PTF
Sbjct: 10  LTPKFPVSQLNFSIEIKGNKTEIIISSYEGHFMVVATQIGAMGTILHARKEEGMSISPTF 69

Query: 64  SVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRL 123
           +VSV+FGKRDEPMLVACARQLIEH++ SG S+PLVLSLGLKDHS ETLKGIVSAV + RL
Sbjct: 70  NVSVLFGKRDEPMLVACARQLIEHMTLSGVSKPLVLSLGLKDHSVETLKGIVSAVIDKRL 129

Query: 124 W 124
           W
Sbjct: 130 W 130

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509383|ref|XP_003523429.1| PREDICTED: proteasome assembly chaperone 3-like [Glycine max]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 85/117 (72%), Positives = 102/117 (87%)

Query: 8   FPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSV 67
           FPV Q   S  +K N+T+III  Y+DHF+VIATQIGTMGTI++ARK+  +S++PTF+VSV
Sbjct: 10  FPVSQLNFSRQIKGNETEIIISRYEDHFMVIATQIGTMGTIMYARKEEGVSINPTFNVSV 69

Query: 68  IFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           IFGKRDEPMLVACARQLIEH+S SG+S+PLVLSLGLKDHS ETLKGIVSAV +N +W
Sbjct: 70  IFGKRDEPMLVACARQLIEHMSLSGSSRPLVLSLGLKDHSVETLKGIVSAVMDNSMW 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15241480|ref|NP_196975.1| proteasome assembly chaperone 3 [Arabidopsis thaliana] gi|9755739|emb|CAC01870.1| putative protein [Arabidopsis thaliana] gi|21537125|gb|AAM61466.1| unknown [Arabidopsis thaliana] gi|26450350|dbj|BAC42291.1| unknown protein [Arabidopsis thaliana] gi|28827716|gb|AAO50702.1| unknown protein [Arabidopsis thaliana] gi|332004682|gb|AED92065.1| proteasome assembly chaperone 3 [Arabidopsis thaliana]

 Score =  185 bits (469), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 103/124 (83%)

Query: 1   MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVH 60
           M  L+ NFPV  +K+S + K NKT+I+ICSY+DH L+IATQIG MGTILHARK+  +SV 
Sbjct: 1   MESLDTNFPVRHRKVSFESKGNKTEIVICSYEDHILIIATQIGAMGTILHARKEEGMSVE 60

Query: 61  PTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTE 120
           PTFSVSVIFGKRDEPML A AR+LIEHISS   S+PLVLSLGLKDHS+ETLK IV+ V E
Sbjct: 61  PTFSVSVIFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETLKEIVATVIE 120

Query: 121 NRLW 124
           NRLW
Sbjct: 121 NRLW 124

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297807487|ref|XP_002871627.1| hypothetical protein ARALYDRAFT_325939 [Arabidopsis lyrata subsp. lyrata] gi|297317464|gb|EFH47886.1| hypothetical protein ARALYDRAFT_325939 [Arabidopsis lyrata subsp. lyrata]

 Score =  184 bits (466), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/124 (71%), Positives = 102/124 (82%)

Query: 1   MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVH 60
           M  L+ NFPV  + +S + K NKT+I+ICSY+DH LVIATQIG MGTILHARK+  +SV 
Sbjct: 1   MESLDTNFPVRHRNISFESKGNKTEIVICSYEDHILVIATQIGAMGTILHARKEEGMSVE 60

Query: 61  PTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTE 120
           PTFSVSVIFGKRDEPML A AR+LIEHISS   S+PLVLSLGLKDHS+ETLK IV+ V E
Sbjct: 61  PTFSVSVIFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETLKEIVATVIE 120

Query: 121 NRLW 124
           NRLW
Sbjct: 121 NRLW 124

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356518557|ref|XP_003527945.1| PREDICTED: uncharacterized protein LOC100790806 [Glycine max]

 Score =  183 bits (464), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 83/117 (70%), Positives = 102/117 (87%)

Query: 8   FPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVSV 67
           FPV Q   S  +K N+T+III  Y+DHF+VIATQIGT+GTI++ARK+  +S++PTF+VSV
Sbjct: 10  FPVSQLNFSRQIKGNETEIIISRYEDHFMVIATQIGTLGTIMYARKEEGVSINPTFNVSV 69

Query: 68  IFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           IFGKRDEPMLVACARQ+IEH+S SG+S+PLVLSLGLKDHS ETLKGIVSAV +N +W
Sbjct: 70  IFGKRDEPMLVACARQMIEHMSLSGSSRPLVLSLGLKDHSVETLKGIVSAVMDNNMW 126

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450101|ref|XP_004142802.1| PREDICTED: proteasome assembly chaperone 3-like [Cucumis sativus]

 Score =  178 bits (452), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 81/118 (68%), Positives = 101/118 (85%)

Query: 7   NFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVHPTFSVS 66
            FPV  K+ S+++K  KTDI+IC +DDHFLVIATQIG MGT+L ARK+  +++ PTFSVS
Sbjct: 7   RFPVSHKQASMEIKGIKTDIVICRHDDHFLVIATQIGAMGTMLQARKEEGMTILPTFSVS 66

Query: 67  VIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
            +FGKRDEPM+VACARQLIE IS SG+ +PL++SLGLKDHS ET+KGIV+AVT+NRLW
Sbjct: 67  TVFGKRDEPMMVACARQLIEQISLSGSYKPLLISLGLKDHSVETMKGIVTAVTDNRLW 124

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116784105|gb|ABK23216.1| unknown [Picea sitchensis] gi|116790636|gb|ABK25686.1| unknown [Picea sitchensis]

 Score =  172 bits (436), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 79/124 (63%), Positives = 104/124 (83%), Gaps = 1/124 (0%)

Query: 1   MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVH 60
           MS + Q FPV  K+L+  +K  KTD+++CSYDDH LV+A+QIGT+GT+LHARK+   + +
Sbjct: 1   MSNIPQ-FPVPYKQLTTTIKGIKTDLVLCSYDDHILVMASQIGTVGTMLHARKEEGFATN 59

Query: 61  PTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTE 120
           P F+VSV+FGKRDEPMLVACARQLIE+IS +G+S+PLV+S+GLKDHS ETLKGI+  V E
Sbjct: 60  PIFNVSVLFGKRDEPMLVACARQLIENISKAGSSRPLVISIGLKDHSVETLKGIIEVVIE 119

Query: 121 NRLW 124
           N++W
Sbjct: 120 NKVW 123

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	124
TAIR|locus:2185430	124	AT5G14710 "AT5G14710" [Arabido	1.0	1.0	0.717	1.5e-42
ZFIN|ZDB-GENE-040718-262	122	psmg3 "proteasome (prosome, ma	0.919	0.934	0.3	4.4e-13
MGI|MGI:1913756	122	Psmg3 "proteasome (prosome, ma	0.919	0.934	0.275	5.2e-10

TAIR|locus:2185430 AT5G14710 "AT5G14710" [Arabidopsis thaliana (taxid:3702)]

 Score = 450 (163.5 bits), Expect = 1.5e-42, P = 1.5e-42
 Identities = 89/124 (71%), Positives = 103/124 (83%)

Query:     1 MSVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISVH 60
             M  L+ NFPV  +K+S + K NKT+I+ICSY+DH L+IATQIG MGTILHARK+  +SV 
Sbjct:     1 MESLDTNFPVRHRKVSFESKGNKTEIVICSYEDHILIIATQIGAMGTILHARKEEGMSVE 60

Query:    61 PTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTE 120
             PTFSVSVIFGKRDEPML A AR+LIEHISS   S+PLVLSLGLKDHS+ETLK IV+ V E
Sbjct:    61 PTFSVSVIFGKRDEPMLTATARRLIEHISSIVPSKPLVLSLGLKDHSSETLKEIVATVIE 120

Query:   121 NRLW 124
             NRLW
Sbjct:   121 NRLW 124

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0009062 "fatty acid catabolic process" evidence=RCA

ZFIN|ZDB-GENE-040718-262 psmg3 "proteasome (prosome, macropain) assembly chaperone 3" [Danio rerio (taxid:7955)]

 Score = 172 (65.6 bits), Expect = 4.4e-13, P = 4.4e-13
 Identities = 36/120 (30%), Positives = 68/120 (56%)

Query:     9 PVVQ-KKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFS 64
             PV++ K+    +  N+T ++   + ++  ++ TQ G +GT++    D    DISV P ++
Sbjct:     5 PVIRSKQAEKTINGNQTQVVCTEFSNYIFIVLTQYGKIGTLVSITPDTRSGDISV-PMYT 63

Query:    65 VSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
               V+ GK DEP+    A+ +   +S    ++P++L L LKD+SAET+K +   +   ++W
Sbjct:    64 SKVLLGK-DEPLTHVYAKNVATFVSQESGNRPILLGLSLKDNSAETMKTVKDMIKSCQVW 122

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

GO:0000502 "proteasome complex" evidence=IEA

MGI|MGI:1913756 Psmg3 "proteasome (prosome, macropain) assembly chaperone 3" [Mus musculus (taxid:10090)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 33/120 (27%), Positives = 62/120 (51%)

Query:     9 PVVQKKLSVDLKRNKTDIIICS-YDDHFLVIATQIGTMGTILHARKDA---DISVHPTFS 64
             P+V  K   ++       ++C+ +  H LV+ TQ G MGT++         DIS  P  +
Sbjct:     5 PLVVSKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSNVANDIS-KPVLT 63

Query:    65 VSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
               V+ G+ DEP++   A+ L+  +S    ++ ++L++ +KD S E LK +   +   ++W
Sbjct:    64 TRVLLGQ-DEPLIHVFAKNLVAFVSQEAGNRAVLLAMAVKDKSMERLKALKEVIRLCQVW 122


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.134   0.380    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      124       124   0.00091  102 3  11 22  0.49    30
                                                     29  0.39    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  542 (58 KB)
  Total size of DFA:  112 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.24u 0.21s 13.45t   Elapsed:  00:00:01
  Total cpu time:  13.24u 0.21s 13.45t   Elapsed:  00:00:01
  Start:  Mon May 20 22:06:31 2013   End:  Mon May 20 22:06:32 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q55G88	PSMG3_DICDI	No assigned EC number	0.3196	0.9677	0.8275	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: grail3.0054003401 hypothetical protein (124 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	124
pfam10178	90	pfam10178, DUF2372, Uncharacterized conserved prot	9e-24

>gnl|CDD|192471 pfam10178, DUF2372, Uncharacterized conserved protein (DUF2372)

 Score = 87.1 bits (216), Expect = 9e-24
 Identities = 34/91 (37%), Positives = 54/91 (59%), Gaps = 5/91 (5%)

Query: 37  VIATQIGTMGTILHA----RKDADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSG 92
           ++ TQ+G +GT++       K       PTF+  V+ GK DEP+    A+ L+E IS   
Sbjct: 1   IVITQLGKIGTLVSVTPDQSKSDGPVDEPTFTTKVLLGK-DEPLTHVYAQNLVEFISGES 59

Query: 93  TSQPLVLSLGLKDHSAETLKGIVSAVTENRL 123
            ++P++LSLGLKD S ETLK ++  + E ++
Sbjct: 60  GNKPVLLSLGLKDKSKETLKALLKVIEECQV 90

This family consists of proteins found from plants to humans. The function is not known. Length = 90

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	124
KOG4828	125	consensus Uncharacterized conserved protein [Funct	100.0
PF10178	90	DUF2372: Uncharacterised conserved protein (DUF237	100.0
PF10448	144	chaperone_DMP: 20S proteasome chaperone; InterPro:	97.6
PF08816	118	Ivy: Inhibitor of vertebrate lysozyme (Ivy); Inter	81.99

>KOG4828 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=2.3e-39  Score=231.08  Aligned_cols=122  Identities=32%  Similarity=0.462  Sum_probs=116.3

Q ss_pred             CcCCCCCCccceeEEEEeCCeeeEEEEEeeCCeEEEEEeecCCcceEEEEeeCCC--CCCCCceeeEeecCCCCcHHHHH
Q 033223            2 SVLEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDAD--ISVHPTFSVSVIFGKRDEPMLVA   79 (124)
Q Consensus         2 ~~~~~~fPv~skq~~~~I~Gv~Tevv~~~FsD~ilV~VTQ~gK~Gt~~~v~~~~~--~~~~p~~t~~~LLG~~de~l~~~   79 (124)
                      ...+.|||++.++.+++.||+||||+|++|+||||++|||+|||||+|++++|+.  ..++|.|++++++|.+|||++++
T Consensus         2 ~~~dtp~~I~~rk~s~~~~GvpTeIV~~~f~~hil~ViTQ~Gkmgti~~~~~~~~~s~v~~P~f~vsV~~g~~Dep~~~~   81 (125)
T KOG4828|consen    2 HTADTPRQIGFRKFSADVNGVPTEIVFHCFAKHILLVITQLGKMGTIYNVHFDVKKSEVDNPEFHVSVPIGMLDEPETRS   81 (125)
T ss_pred             CccCCCceeeeeEEEEEecCCcceEEEEEecceEEEEEEeccccceeEEeeeccccccccCCeEEEEEeecccCCHHHHH
Confidence            3456799999999999999999999999999999999999999999999999855  45999999999999999999999


Q ss_pred             HHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHccc
Q 033223           80 CARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRL  123 (124)
Q Consensus        80 ~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~v  123 (124)
                      +|++|++++++..++|+++||+||||+|.|++|++.+++++|++
T Consensus        82 ~a~~LV~~~s~~~~~~~~vl~lglKd~s~e~Lkal~~v~~e~~~  125 (125)
T KOG4828|consen   82 AAQFLVNRTSLHKCPTEFVLGLGLKDISGENLKALAKVLEETLF  125 (125)
T ss_pred             HHHHHHHHhhcccCCcceEEEEeeccCcchhHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999985

>PF10178 DUF2372: Uncharacterised conserved protein (DUF2372); InterPro: IPR018788 Proteasome assembly chaperone 3 (PSMG3) promotes assembly of the 20S proteasome []

Probab=100.00  E-value=1.6e-32  Score=189.53  Aligned_cols=86  Identities=58%  Similarity=0.943  Sum_probs=66.7

Q ss_pred             EEEeecCCcceEEEEeeC----CCCCCCCceeeEeecCCCCcHHHHHHHHHHHHHhhcCCCCCcEEEEEeeCCCCHHHHH
Q 033223           37 VIATQIGTMGTILHARKD----ADISVHPTFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLK  112 (124)
Q Consensus        37 V~VTQ~gK~Gt~~~v~~~----~~~~~~p~~t~~~LLG~~de~l~~~~Arqi~~~i~~~~~~r~lll~lgLkd~s~e~~~  112 (124)
                      |+|||+||||||+++++|    ++..++|+|++++|||+ |||++++|||||+++|++++++||+++||||||+|+|+||
T Consensus         1 vvvTQ~gK~gtlv~v~~d~~~~~~~~~~p~f~v~vllG~-dep~l~v~Ar~L~~~i~~~~~~r~lllalgLkd~s~e~lk   79 (90)
T PF10178_consen    1 VVVTQIGKMGTLVHVRPDSRKDDGVSDNPTFTVKVLLGK-DEPLLHVYARQLIEFISQEGSNRPLLLALGLKDHSPETLK   79 (90)
T ss_dssp             EEEECTT---EEEEEEE-SS-BT--TCS--EEEEEEES----HHHHHHHHHHHHHHHHHTTT-EEEEEEE-SS--HHHHH
T ss_pred             CEEEecCccceEEEEecccccCCCccCCCcceEEEEecC-CcHHHHHHHHHHHHHHhccCCCCcEEEEEeccCCCHHHHH
Confidence            689999999999999876    33478999999999999 9999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHccc
Q 033223          113 GIVSAVTENRL  123 (124)
Q Consensus       113 ~i~~~i~~~~v  123 (124)
                      +|+++|++|||
T Consensus        80 ~i~~~i~~~~~   90 (90)
T PF10178_consen   80 AIVEVIRENKV   90 (90)
T ss_dssp             HHHHHHHHT--
T ss_pred             HHHHHHHHhcC
Confidence            99999999997

It may cooperate with PSMG1-PSMG2 heterodimers to orchestrate the correct assembly of proteasomes.; PDB: 2Z5E_A.

>PF10448 chaperone_DMP: 20S proteasome chaperone; InterPro: IPR018854 This entry represents the fungal 20S proteasome chaperones 3 and 4 (also known as DMP1 and DMP2), which function in early 20S proteasome assembly

Probab=97.60  E-value=0.00063  Score=50.36  Aligned_cols=83  Identities=14%  Similarity=0.214  Sum_probs=62.0

Q ss_pred             CeeeEEEEE--eeCCeEEEEEeecCCcceEEEEeeCCC----------------CCCCCceeeEeecCCCCcHHHHHHHH
Q 033223           21 RNKTDIIIC--SYDDHFLVIATQIGTMGTILHARKDAD----------------ISVHPTFSVSVIFGKRDEPMLVACAR   82 (124)
Q Consensus        21 Gv~Tevv~~--~FsD~ilV~VTQ~gK~Gt~~~v~~~~~----------------~~~~p~~t~~~LLG~~de~l~~~~Ar   82 (124)
                      |...|+.++  .|+||+.+.|.=+|.+.+-+.++.+..                ......+.+.+++|..++.-..+.|+
T Consensus        20 ~~~~e~~i~~~~~~nKi~I~I~ing~~d~t~e~~~~~~~~~~y~y~i~~~~~~~~~~~~~~~~v~llg~~~D~k~~iv~~   99 (144)
T PF10448_consen   20 GIDYELTIHAIHFSNKIPISIRINGEMDTTFEVPSSGLSLINYVYAIPLEDEFSRDRLSDYVPVVLLGDSNDMKIDIVAR   99 (144)
T ss_dssp             -EEEEEEEECCESSSSCEEEEEECCB--EEEEEEEE---EEEEEEEEESHHHHHHHH---EEEEEEES-TTHCCHHHHHH
T ss_pred             CCCeEEEEEecccCCcceEEEEEeccccccccCccccchheeeeeeccccccccccccCcceEEEEecCCcchhhhhHHH
Confidence            677777776  999999999999999999999965311                11346788899999988888899999


Q ss_pred             HHHHHhhcCCCCCcE-EEEEeeC
Q 033223           83 QLIEHISSSGTSQPL-VLSLGLK  104 (124)
Q Consensus        83 qi~~~i~~~~~~r~l-ll~lgLk  104 (124)
                      |||+.+... -.+|. +++++-|
T Consensus       100 qia~L~~kk-~~~p~~yvsissk  121 (144)
T PF10448_consen  100 QIAKLLVKK-YNPPCLYVSISSK  121 (144)
T ss_dssp             HHHHHHHCC-CTS-EEEEEEECG
T ss_pred             HHHHHHHHh-cCCCceEEEEecc
Confidence            999999866 66676 9999988

The structures of these chaperones have been solved, and they closely resemble that of the mammalian proteasome assembling chaperone PAC3, although there is little sequence similarity between them []. ; PDB: 2Z5C_E 2Z5B_B.

>PF08816 Ivy: Inhibitor of vertebrate lysozyme (Ivy); InterPro: IPR014453 C-type lysozyme enzymes, such as hen egg white lysozyme (HEWL), provide anti-bacterial activity by cleaving peptidoglycan in Gram-positive bacterial cell walls

Probab=81.99  E-value=13  Score=26.71  Aligned_cols=70  Identities=14%  Similarity=0.190  Sum_probs=46.2

Q ss_pred             eEEEEeCCeeeEEEEE-----eeCCeEEEEEeecCC--cceEEEEeeCCCCCCCCc-eeeEeecCCCCcHHHHHHHHH
Q 033223           14 KLSVDLKRNKTDIIIC-----SYDDHFLVIATQIGT--MGTILHARKDADISVHPT-FSVSVIFGKRDEPMLVACARQ   83 (124)
Q Consensus        14 q~~~~I~Gv~Tevv~~-----~FsD~ilV~VTQ~gK--~Gt~~~v~~~~~~~~~p~-~t~~~LLG~~de~l~~~~Arq   83 (124)
                      -.+++++|.+-.+...     +.++++.|+.+..+|  -|-+++++-..+...+|+ +..-.-||+.|+.+..+.=.|
T Consensus        35 ~~~V~~~G~~Y~v~~~CkpHdC~~~~l~vlfs~d~~~a~gl~v~v~d~~~a~~~ps~~a~~~wlG~pd~~~~a~L~~q  112 (118)
T PF08816_consen   35 MEAVTIDGKPYLVGSACKPHDCANNRLYVLFSPDKKQAYGLLVEVPDTPSADDSPSKYATYRWLGKPDDAMQAALMGQ  112 (118)
T ss_dssp             EEEEEETTEEEEEEEEE-TT-TTTEEEEEEEETTTTEEEEEEEE--S-TCCCCTCCCCEEEEEESSSCHHHHHHHHCH
T ss_pred             CeeEEECCEEEEEeccccccCCCcCeEEEEECCCCCceEEEEEecCCCcccccCcchhheeeecCCCCHHHHHHHHHH
Confidence            4568899998888766     678999999999988  676778863323333333 334447999888765544433

In humans, C-type lysozyme is found in all secretions, including tears and saliva. Certain Gram-positive bacteria can produce proteins with anti-lysozyme activity known as Inhibitor of Vertebrate Lysozyme (IVY), which act as virulence factors [, ]. IVY proteins have a 3-layer alpha(2)/beta(5)/alpha(2) topology, and contain a protruding 5-residue loop that is essential for their inhibitory effect [].; GO: 0043086 negative regulation of catalytic activity, 0042597 periplasmic space; PDB: 1GPQ_A 1XS0_A 1UUZ_B.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	124
2z5e_A	122	Crystal Structure Of Proteasome Assembling Chaperon		2e-09

>pdb|2Z5E|A Chain A, Crystal Structure Of Proteasome Assembling Chaperone 3 Length = 122

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 5/104 (4%)
Query: 24  TDIIICSYDDHFLVIATQIGTMGTILHARKDA---DISVHPTFSVSVIFGKRDEPMLVAC 80
           T ++  ++  H LV+ TQ G MGT++     +   D+S  P  +  V+ G +DEP++   
Sbjct: 21  TQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVS-KPVLTTKVLLG-QDEPLIHVF 78
Query: 81  ARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW 124
           A+ L+  +S    ++ ++L++ +KD S E LK +   +   ++W
Sbjct: 79  AKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW 122

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	124
2z5e_A	122	Proteasome assembling chaperone 3; beta sandwich,	4e-42

>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens} Length = 122

 Score =  134 bits (338), Expect = 4e-42
 Identities = 31/123 (25%), Positives = 63/123 (51%), Gaps = 3/123 (2%)

Query: 4   LEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDADISV--HP 61
           +E    V+ K+ +  +    T ++  ++  H LV+ TQ G MGT++     +  S    P
Sbjct: 1   MEDTPLVISKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVSKP 60

Query: 62  TFSVSVIFGKRDEPMLVACARQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTEN 121
             +  V+ G+ DEP++   A+ L+  +S    ++ ++L++ +KD S E LK +   +   
Sbjct: 61  VLTTKVLLGQ-DEPLIHVFAKNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVC 119

Query: 122 RLW 124
           ++W
Sbjct: 120 QVW 122

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	124
2z5e_A	122	Proteasome assembling chaperone 3; beta sandwich,	100.0
2z5b_B	179	DMP2, uncharacterized protein YLR021W; proteasome,	97.46

>2z5e_A Proteasome assembling chaperone 3; beta sandwich, homodimer; 2.00A {Homo sapiens}

Probab=100.00  E-value=4e-51  Score=294.68  Aligned_cols=120  Identities=25%  Similarity=0.500  Sum_probs=116.8

Q ss_pred             CCCCCCccceeEEEEeCCeeeEEEEEeeCCeEEEEEeecCCcceEEEEeeCC--CCCCCCceeeEeecCCCCcHHHHHHH
Q 033223            4 LEQNFPVVQKKLSVDLKRNKTDIIICSYDDHFLVIATQIGTMGTILHARKDA--DISVHPTFSVSVIFGKRDEPMLVACA   81 (124)
Q Consensus         4 ~~~~fPv~skq~~~~I~Gv~Tevv~~~FsD~ilV~VTQ~gK~Gt~~~v~~~~--~~~~~p~~t~~~LLG~~de~l~~~~A   81 (124)
                      ||.+||+++||++++|||+|||++++.|||||||+|||+||||+|+|+++|+  +..++|+|++++|||+ |||++++||
T Consensus         1 ~~~~~pv~~kq~s~~I~Gv~Tevv~~~FsD~ilV~VTQ~Gk~Gt~~~v~~~~~~~~~~~p~~~v~~LLG~-de~l~~~~A   79 (122)
T 2z5e_A            1 MEDTPLVISKQKTEVVCGVPTQVVCTAFSSHILVVVTQFGKMGTLVSLEPSSVASDVSKPVLTTKVLLGQ-DEPLIHVFA   79 (122)
T ss_dssp             CCSCCSSCEEEEEEEETTEEEEEEEEECSSEEEEEEESTTCCCEEEEEEECSSCCSSSSCCEEEEEEESC-CCHHHHHHH
T ss_pred             CCCCCCcceeEEEEEECCeeeEEEEEecCCEEEEEEEeCCeeeEEEEEeccccCCCCCCCcceeEEeecC-ChHHHHHHH
Confidence            5789999999999999999999999999999999999999999999999986  5678999999999999 999999999


Q ss_pred             HHHHHHhhcCCCCCcEEEEEeeCCCCHHHHHHHHHHHHHcccC
Q 033223           82 RQLIEHISSSGTSQPLVLSLGLKDHSAETLKGIVSAVTENRLW  124 (124)
Q Consensus        82 rqi~~~i~~~~~~r~lll~lgLkd~s~e~~~~i~~~i~~~~vW  124 (124)
                      |||+++|++++++|||||||||||+|+|+|++|+++|++||||
T Consensus        80 rql~~~i~~~~~~r~lvl~LgLkd~s~~~~~~i~~~i~~~~vw  122 (122)
T 2z5e_A           80 KNLVAFVSQEAGNRAVLLAVAVKDKSMEGLKALREVIRVCQVW  122 (122)
T ss_dssp             HHHHHHHHHHTTSCEEEEEEECSSCCHHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHhhccCCCCcEEEEecccccCHHHHHHHHHHHHHhccC
Confidence            9999999999999999999999999999999999999999999

>2z5b_B DMP2, uncharacterized protein YLR021W; proteasome, chaperone; 1.96A {Saccharomyces cerevisiae} PDB: 2z5c_B

Probab=97.46  E-value=0.0035  Score=47.04  Aligned_cols=82  Identities=13%  Similarity=0.189  Sum_probs=66.9

Q ss_pred             eeEEEEEeeCCeEEEEEeecCCcceEEEEeeCCC--------------C---C------------CCCceeeEeecCCCC
Q 033223           23 KTDIIICSYDDHFLVIATQIGTMGTILHARKDAD--------------I---S------------VHPTFSVSVIFGKRD   73 (124)
Q Consensus        23 ~Tevv~~~FsD~ilV~VTQ~gK~Gt~~~v~~~~~--------------~---~------------~~p~~t~~~LLG~~d   73 (124)
                      +=++....|+|||++-|.=+|-|-+=|.+.+.+.              .   .            ....|++.++||...
T Consensus        26 El~~~a~hf~NkiiLqIr~NGemDtTyEV~skgl~~~~~in~pla~~~~n~g~d~d~d~~e~v~D~ls~y~vv~~lGds~  105 (179)
T 2z5b_B           26 ELYVQATHFNNTILLQIRLNGEMDSTYEVSSKGLNPILDINVPLAGNLGNTGGDYDDEEEEFVRDHLSDYQVVTKLGDSA  105 (179)
T ss_dssp             EEEEEEEECSSCEEEEEEETTBCCEEEEEEECCC--------------------CCCSHHHHHHHHCCCEEEEEEESCTT
T ss_pred             eEEEEEEeecCeEEEEEEEcceeeeeEEeccCcCCccccccchhhhcccccCccccccccccccccccccceEEEecCCC
Confidence            6778888999999999999999999999964311              0   0            124577999999988


Q ss_pred             cHHHHHHHHHHHHHhhcC------------CCCCcEEEEEeeC
Q 033223           74 EPMLVACARQLIEHISSS------------GTSQPLVLSLGLK  104 (124)
Q Consensus        74 e~l~~~~Arqi~~~i~~~------------~~~r~lll~lgLk  104 (124)
                      +.=..+.|.|||+.+...            .++|+++++||=|
T Consensus       106 dmKlpVVctQIaeLy~~~ilp~~~~~~~~~~~~k~liiSlsSK  148 (179)
T 2z5b_B          106 DPKVPVVCVQIAELYRRVILPEVSGTMAQDNMQFSLLISMSSK  148 (179)
T ss_dssp             CTTHHHHHHHHHHHHHHTTSCC----------CCEEEEEECGG
T ss_pred             cccccChHHHHHHHHHHhhccccccccccccCCcceEEEeehh
Confidence            998999999999999844            6899999999987

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00