Citrus Sinensis ID: 033339

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN
Secondary Structure (PSIPRED)
cHHHHHHHHHHccHHHHHHHHHHHccccccccHHHHHccccccccccccccccccHHHHHHHccccccccEEEEccccHHHHHHHHHHHccccEEEEEcccccccEEEEEEcHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHcccHHHHHHHEEEccccccccccEEEcccccccccHHHcccccccHHHHHHHcccccccEEEEEccccHHHHHHHHHHHcccEEEEEEccccccEEEEEEEHHHHHHHHcc
Coil and Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLvnpmlrpvvssrFESVSSarmeehgfesttISDILKakgkgadgswlwcttdDTVYDAVKSMTQHNVGAlvvvkpgeqksvagIITERGIFKACHN
Flexible Loop (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSsarmeehgfesttisdILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVgalvvvkpgeqksvagiitergifkachn
Low Complexity Region (SEG)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN
Disordered region (IsUnstruct)
*******FLSHGNIVKSAVLQRIRLVNPMLRPVV********************TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA***
Disordered Region (DISOPRED)
*********SHGNIVKSAVLQRIRLVNPML***********************TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA***
Disordered Region (DISEMBL)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN
Disordered Region (DISPRO)
*QGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARME*HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q9LEV3	206	CBS domain-containing pro	yes	no	0.966	0.567	0.720	1e-45
P32987	164	Uncharacterized 17.7 kDa	N/A	no	0.338	0.25	0.511	0.0008

>sp|Q9LEV3|CBSX3_ARATH CBS domain-containing protein CBSX3, mitochondrial OS=Arabidopsis thaliana GN=CBSX3 PE=1 SV=1

 Score =  181 bits (459), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 85/118 (72%), Positives = 101/118 (85%), Gaps = 1/118 (0%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
           MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct: 1   MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query: 60  LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITER   +
Sbjct: 61  MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITERDYLR 118

Arabidopsis thaliana (taxid: 3702)

>sp|P32987|YBP3_ACIAM Uncharacterized 17.7 kDa protein in bps2 3'region OS=Acidianus ambivalens PE=4 SV=1

 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 22/43 (51%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
           T+ +A K M +HN+G+LVV+    Q  V GIITER I KA  N
Sbjct: 21  TIAEAAKEMKEHNLGSLVVID--SQNRVVGIITERDIVKAASN 61

Acidianus ambivalens (taxid: 2283)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
357491621	205	Cbs domain protein [Medicago truncatula]	0.966	0.570	0.786	3e-51
357491617	242	Cbs domain protein [Medicago truncatula]	0.966	0.483	0.786	4e-51
357491619	254	Cbs domain protein [Medicago truncatula]	0.966	0.460	0.786	5e-51
357491615	205	Cbs domain protein [Medicago truncatula]	0.966	0.570	0.786	6e-51
224127037	205	predicted protein [Populus trichocarpa]	0.966	0.570	0.777	3e-50
351722175	205	uncharacterized protein LOC100527191 [Gl	0.966	0.570	0.769	2e-49
225434277	205	PREDICTED: CBS domain-containing protein	0.966	0.570	0.777	1e-48
297745725	262	unnamed protein product [Vitis vinifera]	0.966	0.446	0.777	3e-48
388511535	205	unknown [Lotus japonicus]	0.966	0.570	0.735	1e-47
351727132	206	uncharacterized protein LOC100306364 [Gl	0.966	0.567	0.735	4e-47

>gi|357491621|ref|XP_003616098.1| Cbs domain protein [Medicago truncatula] gi|355517433|gb|AES99056.1| Cbs domain protein [Medicago truncatula]

 Score =  205 bits (521), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 108/117 (92%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 38  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER   +
Sbjct: 98  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491617|ref|XP_003616096.1| Cbs domain protein [Medicago truncatula] gi|355517431|gb|AES99054.1| Cbs domain protein [Medicago truncatula]

 Score =  204 bits (520), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 108/117 (92%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 38  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 97

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER   +
Sbjct: 98  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 154

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491619|ref|XP_003616097.1| Cbs domain protein [Medicago truncatula] gi|355517432|gb|AES99055.1| Cbs domain protein [Medicago truncatula]

 Score =  204 bits (520), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 108/117 (92%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 50  MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 109

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER   +
Sbjct: 110 KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 166

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357491615|ref|XP_003616095.1| Cbs domain protein [Medicago truncatula] gi|217073214|gb|ACJ84966.1| unknown [Medicago truncatula] gi|355517430|gb|AES99053.1| Cbs domain protein [Medicago truncatula] gi|388522955|gb|AFK49539.1| unknown [Medicago truncatula]

 Score =  204 bits (518), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 92/117 (78%), Positives = 108/117 (92%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLS+GN++K+AVLQR+R+VNP+L+PV  SRFES + AR+EEHGFESTTISDIL
Sbjct: 1   MQGGLRSFLSNGNVIKNAVLQRVRMVNPLLQPVAFSRFESATPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           K KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVKPGE+KS+AGIITER   +
Sbjct: 61  KGKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKPGEEKSIAGIITERDYLR 117

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127037|ref|XP_002319991.1| predicted protein [Populus trichocarpa] gi|222858367|gb|EEE95914.1| predicted protein [Populus trichocarpa]

 Score =  202 bits (513), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 108/117 (92%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGA+++ L+HGN+VK ++LQ +R+++P+LRP+V SRFESVSSAR+EEHGFEST I+DIL
Sbjct: 1   MQGALRACLTHGNVVKDSLLQHVRVLSPLLRPIVFSRFESVSSARIEEHGFESTRIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           K KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKS+AGIITER   +
Sbjct: 61  KEKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSIAGIITERDYLR 117

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351722175|ref|NP_001236211.1| uncharacterized protein LOC100527191 [Glycine max] gi|255631750|gb|ACU16242.1| unknown [Glycine max]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 105/117 (89%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG  QSFLSHGN++++AVLQR+R+VNP+L+P+VSSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1   MQGGFQSFLSHGNVIRNAVLQRVRMVNPLLQPIVSSRFESVTPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
             KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK    K++AGIITER   +
Sbjct: 61  NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAIAGIITERDYLR 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434277|ref|XP_002262902.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 1 [Vitis vinifera] gi|225434279|ref|XP_002262927.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 2 [Vitis vinifera] gi|225434281|ref|XP_002262956.1| PREDICTED: CBS domain-containing protein CBSX3, mitochondrial isoform 3 [Vitis vinifera]

 Score =  196 bits (498), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 105/117 (89%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 1   MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITER   +
Sbjct: 61  KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLR 117

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745725|emb|CBI15781.3| unnamed protein product [Vitis vinifera]

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/117 (77%), Positives = 105/117 (89%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQGAIQ+ +SHG+IVK+AVL +IRLVNP++  VV SR +SV+SARMEEHGFESTTI+D+L
Sbjct: 58  MQGAIQAIVSHGSIVKNAVLHQIRLVNPIMPSVVFSRLQSVTSARMEEHGFESTTIADVL 117

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           K KGK ADGSWLWCTTDD+VYDAVKSMT HNVGALVVVKPGEQKS+AGIITER   +
Sbjct: 118 KGKGKSADGSWLWCTTDDSVYDAVKSMTHHNVGALVVVKPGEQKSIAGIITERDYLR 174

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511535|gb|AFK43829.1| unknown [Lotus japonicus]

 Score =  193 bits (490), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 106/117 (90%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG +++  S GN++K+AVLQ++R+VNP+L+PV  SR+ESVS AR+EEHGFESTTI+DIL
Sbjct: 1   MQGGMRAIFSRGNVIKNAVLQQVRMVNPLLKPVAFSRYESVSPARIEEHGFESTTIADIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           KAKGKGADGSWLWCTT+DTVY+AVKSMTQ+NVGALVVVKP E+KS+AGIITER   +
Sbjct: 61  KAKGKGADGSWLWCTTEDTVYEAVKSMTQNNVGALVVVKPAEEKSIAGIITERDYLR 117

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727132|ref|NP_001237662.1| uncharacterized protein LOC100306364 [Glycine max] gi|255628307|gb|ACU14498.1| unknown [Glycine max]

 Score =  191 bits (486), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 86/117 (73%), Positives = 103/117 (88%)

Query: 1   MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDIL 60
           MQG ++SFLSHGN++++AVLQR+R+VNP+L+ + SSRFESV+ AR+EEHGFESTTISDIL
Sbjct: 1   MQGGMRSFLSHGNVIRNAVLQRVRMVNPLLQTIASSRFESVTPARIEEHGFESTTISDIL 60

Query: 61  KAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
             KGKGADGSWLWCTTDDTVYDAVKSMTQ+NVGALVVVK    K++ GIITER   +
Sbjct: 61  NDKGKGADGSWLWCTTDDTVYDAVKSMTQNNVGALVVVKSDANKAITGIITERDYLR 117

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2183740	206	CBSX3 "AT5G10860" [Arabidopsis	0.933	0.548	0.745	3.2e-42
TAIR|locus:4515102654	193	AT1G47271 "AT1G47271" [Arabido	0.809	0.507	0.424	1.4e-16

TAIR|locus:2183740 CBSX3 "AT5G10860" [Arabidopsis thaliana (taxid:3702)]

 Score = 447 (162.4 bits), Expect = 3.2e-42, P = 3.2e-42
 Identities = 85/114 (74%), Positives = 100/114 (87%)

Query:     1 MQGAIQSFLSHGNIVKSAVLQRIRLVNPMLRP-VVSSRFESVSSARMEEHGFESTTISDI 59
             MQG I+SF+S GN+VK +VLQ +R++NP ++P V  SR ES   ARMEE GFESTTISD+
Sbjct:     1 MQGVIRSFVSGGNVVKGSVLQHLRVINPAIQPSVFCSRSESTQPARMEESGFESTTISDV 60

Query:    60 LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
             +K+KGK ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ+++AGIITER
Sbjct:    61 MKSKGKSADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQQALAGIITER 114

GO:0005739 "mitochondrion" evidence=IDA

GO:0009651 "response to salt stress" evidence=IEP;RCA

GO:0050897 "cobalt ion binding" evidence=IDA

GO:0045454 "cell redox homeostasis" evidence=IDA

GO:0006096 "glycolysis" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0006972 "hyperosmotic response" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009266 "response to temperature stimulus" evidence=RCA

GO:0046686 "response to cadmium ion" evidence=RCA

TAIR|locus:4515102654 AT1G47271 "AT1G47271" [Arabidopsis thaliana (taxid:3702)]

 Score = 205 (77.2 bits), Expect = 1.4e-16, P = 1.4e-16
 Identities = 42/99 (42%), Positives = 65/99 (65%)

Query:    19 VLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDD 78
             +L R   V  + +  VS+ F  ++S    E G E+ T++D+L  K    D +W+ C T+D
Sbjct:     8 LLARANEVPKIHQRKVSAGFGCLTSPPPPEKGLENLTVADVLSTKDTDID-TWISCRTND 66

Query:    79 TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
             TV DAVK+M +HN+G+LVV++PG+Q+ +AGI+TER   K
Sbjct:    67 TVSDAVKNMAKHNIGSLVVLEPGDQQYIAGIVTERDYMK 105


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.130   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      121       121   0.00091  102 3  11 22  0.36    31
                                                     29  0.49    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  117 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.74u 0.23s 10.97t   Elapsed:  00:00:01
  Total cpu time:  10.74u 0.23s 10.97t   Elapsed:  00:00:01
  Start:  Fri May 10 23:48:48 2013   End:  Fri May 10 23:48:49 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LEV3	CBSX3_ARATH	No assigned EC number	0.7203	0.9669	0.5679	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00131316 hypothetical protein (205 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	121
cd04623	113	cd04623, CBS_pair_10, The CBS domain, named after	2e-11
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	1e-07
cd04631	125	cd04631, CBS_pair_18, The CBS domain, named after	7e-07
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-06
cd04624	112	cd04624, CBS_pair_11, The CBS domain, named after	2e-06
cd04584	121	cd04584, CBS_pair_ACT_assoc, This cd contains two	3e-06
pfam00571	57	pfam00571, CBS, CBS domain	8e-06
COG0517	117	COG0517, COG0517, FOG: CBS domain [General functio	2e-05
cd04802	112	cd04802, CBS_pair_3, The CBS domain, named after h	3e-05
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	3e-05
cd04625	112	cd04625, CBS_pair_12, The CBS domain, named after	4e-05
cd04622	113	cd04622, CBS_pair_9, The CBS domain, named after h	1e-04
cd02205	113	cd02205, CBS_pair, The CBS domain, named after hum	1e-04
PRK14869	546	PRK14869, PRK14869, putative manganese-dependent i	1e-04
cd04613	114	cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd con	2e-04
smart00116	49	smart00116, CBS, Domain in cystathionine beta-synt	2e-04
cd04588	110	cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This c	3e-04
cd04612	111	cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd cont	4e-04
cd04611	111	cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd co	4e-04
cd04595	110	cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd con	5e-04
cd04800	111	cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This c	6e-04
cd04621	135	cd04621, CBS_pair_8, The CBS domain, named after h	7e-04
cd04632	128	cd04632, CBS_pair_19, The CBS domain, named after	7e-04
cd04599	105	cd04599, CBS_pair_GGDEF_assoc2, This cd contains t	7e-04
cd04585	122	cd04585, CBS_pair_ACT_assoc2, This cd contains two	0.001
cd04587	113	cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd	0.002
cd04633	121	cd04633, CBS_pair_20, The CBS domain, named after	0.002
cd04630	114	cd04630, CBS_pair_17, The CBS domain, named after	0.002

>gnl|CDD|239995 cd04623, CBS_pair_10, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 56.0 bits (136), Expect = 2e-11
 Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 2/45 (4%)

Query: 69  GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
              +    D TV +A K M + N+GA+VVV  G +  + GI +ER
Sbjct: 1   RDVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGR--LVGIFSER 43

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 16/42 (38%), Positives = 27/42 (64%), Gaps = 3/42 (7%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
           + C+ D T+ +A + MT+H V +L+VV  G    + GI+T+R
Sbjct: 4   VTCSPDTTIREAARLMTEHRVSSLLVVDDGR---LVGIVTDR 42

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|240002 cd04631, CBS_pair_18, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 44.2 bits (105), Expect = 7e-07
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
             T DD++ DA + M +  VG L VV   +   + GI+TER + KA
Sbjct: 82  TITPDDSIKDAAELMLEKRVGGLPVVD--DDGKLVGIVTERDLLKA 125

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 125

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 43.6 bits (104), Expect = 1e-06
 Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
             + DDT+ +A + M +H+VGAL V    E   + GI+T+R I
Sbjct: 5   TVSPDDTIREAARLMREHDVGALPVC---ENDRLVGIVTDRDI 44

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239996 cd04624, CBS_pair_11, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 42.6 bits (101), Expect = 2e-06
 Identities = 19/45 (42%), Positives = 27/45 (60%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
              D ++ +A K M + NVG++VVV P E     GI+TER I +A
Sbjct: 6   VDPDTSIREAAKLMAEENVGSVVVVDPDE--RPIGIVTERDIVRA 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239957 cd04584, CBS_pair_ACT_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 42.6 bits (101), Expect = 3e-06
 Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 12/89 (13%)

Query: 30  LRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ 89
           LR    S F ++S   +         + +I+           +     DTV +A   M +
Sbjct: 45  LRDASPSPFTTLSEHELYL--LLKMPVKEIMTKDV-------ITVHPLDTVEEAALLMRE 95

Query: 90  HNVGALVVVKPGEQKSVAGIITERGIFKA 118
           H +G L VV+ G    + GIITE  + + 
Sbjct: 96  HRIGCLPVVEDGR---LVGIITETDLLRT 121

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 121

>gnl|CDD|201313 pfam00571, CBS, CBS domain

 Score = 40.2 bits (95), Expect = 8e-06
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           +    D ++ +A++ M ++ +  L VV   E   + GI+T R + +A
Sbjct: 10  VTVPPDTSLEEALELMRENGISRLPVV--DEDGKLVGIVTLRDLLRA 54

CBS domains are small intracellular modules that pair together to form a stable globular domain. This family represents a single CBS domain. Pairs of these domains have been termed a Bateman domain. CBS domains have been shown to bind ligands with an adenosyl group such as AMP, ATP and S-AdoMet. CBS domains are found attached to a wide range of other protein domains suggesting that CBS domains may play a regulatory role making proteins sensitive to adenosyl carrying ligands. The region containing the CBS domains in Cystathionine-beta synthase is involved in regulation by S-AdoMet. CBS domain pairs from AMPK bind AMP or ATP. The CBS domains from IMPDH and the chloride channel CLC2 bind ATP. Length = 57

>gnl|CDD|223591 COG0517, COG0517, FOG: CBS domain [General function prediction only]

 Score = 40.9 bits (96), Expect = 2e-05
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
              D +V DA+  M+++ V A+ VV   +   + GIITER I +A
Sbjct: 12  VKPDTSVRDALLLMSENGVSAVPVV---DDGKLVGIITERDILRA 53

Length = 117

>gnl|CDD|240115 cd04802, CBS_pair_3, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 40.0 bits (94), Expect = 3e-05
 Identities = 19/43 (44%), Positives = 26/43 (60%), Gaps = 3/43 (6%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
             D TVY+A   MT++N+G L+VV   +     GIITER + K
Sbjct: 7   DPDTTVYEAANIMTENNIGRLIVVDNEK---PVGIITERDLVK 46

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 3e-05
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
            + DDTV +A++ M +H +  L VV   +   + GI+TER + +A   
Sbjct: 6   VSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERDLLRALAE 51

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239997 cd04625, CBS_pair_12, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 39.7 bits (93), Expect = 4e-05
 Identities = 13/44 (29%), Positives = 28/44 (63%), Gaps = 3/44 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
           +  + +AV +M + ++G+LVV++ GE   + G++T R + +A  
Sbjct: 9   ETLLSEAVATMAEQDLGSLVVMERGE---LVGLLTFREVLQAMA 49

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 112

>gnl|CDD|239994 cd04622, CBS_pair_9, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (90), Expect = 1e-04
 Identities = 17/65 (26%), Positives = 30/65 (46%), Gaps = 9/65 (13%)

Query: 47  EEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSV 106
           E    ++TT+ D++           +  T DD V +A + M +H V  L VV   +   +
Sbjct: 51  EGRDPDTTTVGDVMT-------RGVVTVTEDDDVDEAARLMREHQVRRLPVV--DDDGRL 101

Query: 107 AGIIT 111
            GI++
Sbjct: 102 VGIVS 106

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|239067 cd02205, CBS_pair, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 38.2 bits (89), Expect = 1e-04
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 13/75 (17%)

Query: 55  TISDILKAKGKGADGSWLW-----------CTTDDTVYDAVKSMTQHNVGALVVVKPGEQ 103
           T  D+L+A  +G     +             + D ++ +A + M +H +  L VV   ++
Sbjct: 41  TERDLLRALAEGGLDPLVTVGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVD--DE 98

Query: 104 KSVAGIITERGIFKA 118
             + GI+T   I +A
Sbjct: 99  GRLVGIVTRSDILRA 113

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 113

>gnl|CDD|237843 PRK14869, PRK14869, putative manganese-dependent inorganic pyrophosphatase; Provisional

 Score = 39.8 bits (94), Expect = 1e-04
 Identities = 12/65 (18%), Positives = 26/65 (40%), Gaps = 9/65 (13%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
             + D+   K             D ++ +A   M ++NV  L VV    +  + G+++  
Sbjct: 68  PQVRDLEIDKPVTVS-------PDTSLKEAWNLMDENNVKTLPVVDEEGK--LLGLVSLS 118

Query: 114 GIFKA 118
            + +A
Sbjct: 119 DLARA 123

Length = 546

>gnl|CDD|239986 cd04613, CBS_pair_SpoIVFB_EriC_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 37.9 bits (89), Expect = 2e-04
 Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 1/45 (2%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
              +D++ DA+K     +   L VV     K + GI++   +  A
Sbjct: 71  VYPEDSLEDALKKFEDSDYEQLPVVDDDPGK-LLGILSRSDLLSA 114

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 114

>gnl|CDD|214522 smart00116, CBS, Domain in cystathionine beta-synthase and other proteins

 Score = 36.3 bits (85), Expect = 2e-04
 Identities = 14/45 (31%), Positives = 26/45 (57%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
            + D T+ +A++ + ++ +  L VV   E+  + GI+T R I KA
Sbjct: 5   VSPDTTLEEALELLRENGIRRLPVVD--EEGRLVGIVTRRDIIKA 47

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease. Length = 49

>gnl|CDD|239961 cd04588, CBS_pair_CAP-ED_DUF294_assoc_arch, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

 Score = 36.9 bits (86), Expect = 3e-04
 Identities = 22/71 (30%), Positives = 34/71 (47%), Gaps = 9/71 (12%)

Query: 48  EHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVA 107
             G E   + D++       D        D+ +YDA++ M +HNVG L+V    E + V 
Sbjct: 49  ARGLELAKVKDVMTKDVITIDE-------DEQLYDAIRLMNKHNVGRLIVTD-DEGRPV- 99

Query: 108 GIITERGIFKA 118
           GIIT   I ++
Sbjct: 100 GIITRTDILRS 110

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|239985 cd04612, CBS_pair_SpoIVFB_EriC_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 2/42 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           D+T+ DA+K M + ++G L VV       + GI++   + +A
Sbjct: 72  DETLRDALKRMAERDIGRLPVVDDS--GRLVGIVSRSDLLRA 111

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239984 cd04611, CBS_pair_PAS_GGDEF_DUF1_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

 Score = 36.8 bits (86), Expect = 4e-04
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 3/45 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           C  D ++ +A   M +  + ++VVV  G      GI+TER I + 
Sbjct: 6   CPPDTSLAEAASRMRERRISSIVVVDDGRP---LGIVTERDILRL 47

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239968 cd04595, CBS_pair_DHH_polyA_Pol_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

 Score = 36.4 bits (85), Expect = 5e-04
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
           + T+ +A + + ++   AL VV+ G    V GII+ R + KA  
Sbjct: 10  EATIEEARELLLRYGHTALPVVEGGR---VVGIISRRDVEKALR 50

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 110

>gnl|CDD|240113 cd04800, CBS_pair_CAP-ED_DUF294_PBI_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 36.3 bits (85), Expect = 6e-04
 Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           D TV++A+  M +  +  L VV  G    + G+I+   + + 
Sbjct: 73  DATVFEALLLMLERGIHHLPVVDDGR---LVGVISATDLLRL 111

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 111

>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.6 bits (85), Expect = 7e-04
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           +D V DA K M + N+  L VV   +  ++ G+IT+  I + 
Sbjct: 97  NDDVVDAAKLMLEANISGLPVV---DNDNIVGVITKTDICRE 135

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 135

>gnl|CDD|240003 cd04632, CBS_pair_19, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 36.3 bits (84), Expect = 7e-04
 Identities = 15/42 (35%), Positives = 28/42 (66%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           +D+V DAV  M +++  ++VVV P +   V GI+T++ + +A
Sbjct: 87  NDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 128

>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

 Score = 36.2 bits (84), Expect = 7e-04
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)

Query: 78  DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
           D+V  A + M +H +G L VV   E   + GIIT R + +A  N
Sbjct: 10  DSVGRAARLMEKHRIGGLPVV---EDGKLVGIITSRDVRRAHPN 50

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 105

>gnl|CDD|239958 cd04585, CBS_pair_ACT_assoc2, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

 Score = 35.7 bits (83), Expect = 0.001
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 2/44 (4%)

Query: 75  TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           + D +V +A + M +  +  L VV   +Q  + GIITE  +F+A
Sbjct: 81  SPDASVEEAAELMLERKISGLPVVD--DQGRLVGIITESDLFRA 122

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 122

>gnl|CDD|239960 cd04587, CBS_pair_CAP-ED_DUF294_PBI_assoc, This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 3/42 (7%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
            +   TV +A K M +  V  ++V+   +   + GI T + I
Sbjct: 6   VSPTTTVQEAAKLMREKRVSCVLVM---DGNKLVGIFTSKDI 44

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pairs associate. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Length = 113

>gnl|CDD|240004 cd04633, CBS_pair_20, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 35.0 bits (81), Expect = 0.002
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
           DD V  A + M  H++  L V++ G+   + GI+TE+ I  A  +
Sbjct: 9   DDRVSHARRLMLDHDISRLPVIEGGK---LVGIVTEKDIADALRS 50

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 121

>gnl|CDD|240001 cd04630, CBS_pair_17, The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

 Score = 34.9 bits (81), Expect = 0.002
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)

Query: 79  TVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
           TV +A++ M +H V +LVV K  E     GI+T R I K
Sbjct: 11  TVAEALQLMKEHGVSSLVVEKRRES-DAYGIVTMRDILK 48

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members), Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase), retinitis pigmentosa (IMP dehydrogenase-1), and homocystinuria (cystathionine beta-synthase). Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
PF00571	57	CBS: CBS domain CBS domain web page. Mutations in	99.4
COG2524	294	Predicted transcriptional regulator, contains C-te	98.99
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.94
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.85
cd04597	113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	98.82
COG3620	187	Predicted transcriptional regulator with C-termina	98.79
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.79
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.78
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	98.75
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.74
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.74
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	98.74
COG2524	294	Predicted transcriptional regulator, contains C-te	98.73
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.72
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.72
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.71
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.69
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.69
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.67
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	98.66
cd04618	98	CBS_pair_5 The CBS domain, named after human CBS,	98.66
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.66
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.65
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.64
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.64
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	98.64
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	98.64
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.63
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	98.63
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.63
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.62
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.61
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.61
cd04641	120	CBS_pair_28 The CBS domain, named after human CBS,	98.61
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.6
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.6
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.59
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.59
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.59
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.59
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.58
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	98.58
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.58
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.57
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.57
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.57
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.57
PRK10892	326	D-arabinose 5-phosphate isomerase; Provisional	98.57
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.57
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	98.56
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.56
COG3448	382	CBS-domain-containing membrane protein [Signal tra	98.56
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.56
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.56
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.56
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.55
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.55
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.55
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.55
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.55
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.54
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.54
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.54
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.53
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.53
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.52
cd04614	96	CBS_pair_1 The CBS domain, named after human CBS,	98.52
COG0517	117	FOG: CBS domain [General function prediction only]	98.52
PRK14869	546	putative manganese-dependent inorganic pyrophospha	98.52
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.52
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.51
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.51
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.51
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.51
smart00116	49	CBS Domain in cystathionine beta-synthase and othe	98.51
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	98.49
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.49
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.49
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.49
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.47
PLN02274	505	inosine-5'-monophosphate dehydrogenase	98.47
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.47
cd04608	124	CBS_pair_PALP_assoc This cd contains two tandem re	98.46
cd04605	110	CBS_pair_MET2_assoc This cd contains two tandem re	98.46
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.46
cd04630	114	CBS_pair_17 The CBS domain, named after human CBS,	98.44
cd04624	112	CBS_pair_11 The CBS domain, named after human CBS,	98.43
PRK11543	321	gutQ D-arabinose 5-phosphate isomerase; Provisiona	98.41
cd04643	116	CBS_pair_30 The CBS domain, named after human CBS,	98.41
cd04617	118	CBS_pair_4 The CBS domain, named after human CBS,	98.41
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	98.4
COG4109	432	Predicted transcriptional regulator containing CBS	98.4
cd04582	106	CBS_pair_ABC_OpuCA_assoc This cd contains two tand	98.39
cd04623	113	CBS_pair_10 The CBS domain, named after human CBS,	98.39
cd04600	124	CBS_pair_HPP_assoc This cd contains two tandem rep	98.38
cd04593	115	CBS_pair_EriC_assoc_bac_arch This cd contains two	98.38
cd04613	114	CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two	98.38
cd04590	111	CBS_pair_CorC_HlyC_assoc This cd contains two tand	98.37
cd04632	128	CBS_pair_19 The CBS domain, named after human CBS,	98.37
cd04642	126	CBS_pair_29 The CBS domain, named after human CBS,	98.36
PRK01862	574	putative voltage-gated ClC-type chloride channel C	98.35
cd04619	114	CBS_pair_6 The CBS domain, named after human CBS,	98.35
cd04629	114	CBS_pair_16 The CBS domain, named after human CBS,	98.35
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.34
COG2905	610	Predicted signal-transduction protein containing c	98.34
cd04627	123	CBS_pair_14 The CBS domain, named after human CBS,	98.34
cd04588	110	CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains	98.32
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	98.32
cd04631	125	CBS_pair_18 The CBS domain, named after human CBS,	98.31
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	98.31
cd04583	109	CBS_pair_ABC_OpuCA_assoc2 This cd contains two tan	98.3
cd04803	122	CBS_pair_15 The CBS domain, named after human CBS,	98.29
cd04586	135	CBS_pair_BON_assoc This cd contains two tandem rep	98.29
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.27
cd04801	114	CBS_pair_M50_like This cd contains two tandem repe	98.27
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	98.27
cd04626	111	CBS_pair_13 The CBS domain, named after human CBS,	98.27
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.27
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.26
cd04621	135	CBS_pair_8 The CBS domain, named after human CBS,	98.26
cd04639	111	CBS_pair_26 The CBS domain, named after human CBS,	98.25
cd04609	110	CBS_pair_PALP_assoc2 This cd contains two tandem r	98.24
cd04603	111	CBS_pair_KefB_assoc This cd contains two tandem re	98.24
cd04640	126	CBS_pair_27 The CBS domain, named after human CBS,	98.24
cd04595	110	CBS_pair_DHH_polyA_Pol_assoc This cd contains two	98.24
cd04615	113	CBS_pair_2 The CBS domain, named after human CBS,	98.23
cd04612	111	CBS_pair_SpoIVFB_EriC_assoc This cd contains two t	98.23
cd04637	122	CBS_pair_24 The CBS domain, named after human CBS,	98.23
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	98.21
cd04587	113	CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains	98.21
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.21
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.21
cd04636	132	CBS_pair_23 The CBS domain, named after human CBS,	98.2
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	98.19
cd04635	122	CBS_pair_22 The CBS domain, named after human CBS,	98.19
cd04602	114	CBS_pair_IMPDH_2 This cd contains two tandem repea	98.17
cd04607	113	CBS_pair_NTP_transferase_assoc This cd contains tw	98.17
cd04634	143	CBS_pair_21 The CBS domain, named after human CBS,	98.17
cd04800	111	CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains	98.17
cd04584	121	CBS_pair_ACT_assoc This cd contains two tandem rep	98.16
PRK15094	292	magnesium/cobalt efflux protein CorC; Provisional	98.16
cd04589	111	CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains	98.16
cd04596	108	CBS_pair_DRTGG_assoc This cd contains two tandem r	98.16
cd04585	122	CBS_pair_ACT_assoc2 This cd contains two tandem re	98.15
cd04611	111	CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two	98.15
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	98.15
cd02205	113	CBS_pair The CBS domain, named after human CBS, is	98.15
cd04598	119	CBS_pair_GGDEF_assoc This cd contains two tandem r	98.13
cd04633	121	CBS_pair_20 The CBS domain, named after human CBS,	98.13
cd04622	113	CBS_pair_9 The CBS domain, named after human CBS,	98.12
TIGR00393	268	kpsF KpsF/GutQ family protein. This model describe	98.11
COG2905	610	Predicted signal-transduction protein containing c	98.09
COG3620	187	Predicted transcriptional regulator with C-termina	98.09
cd04599	105	CBS_pair_GGDEF_assoc2 This cd contains two tandem	98.07
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	98.07
COG0517	117	FOG: CBS domain [General function prediction only]	98.07
cd04802	112	CBS_pair_3 The CBS domain, named after human CBS,	98.06
cd04601	110	CBS_pair_IMPDH This cd contains two tandem repeats	98.06
COG4109	432	Predicted transcriptional regulator containing CBS	98.05
cd04604	114	CBS_pair_KpsF_GutQ_assoc This cd contains two tand	98.04
cd04594	104	CBS_pair_EriC_assoc_archaea This cd contains two t	98.02
TIGR03520	408	GldE gliding motility-associated protein GldE. Mem	97.99
cd04620	115	CBS_pair_7 The CBS domain, named after human CBS,	97.97
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	97.97
PLN02274	505	inosine-5'-monophosphate dehydrogenase	97.97
cd04625	112	CBS_pair_12 The CBS domain, named after human CBS,	97.96
PRK11573	413	hypothetical protein; Provisional	97.91
cd04591	105	CBS_pair_EriC_assoc_euk_bac This cd contains two t	97.91
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	97.91
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	97.9
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	97.87
cd04606	109	CBS_pair_Mg_transporter This cd contains two tande	97.83
cd04638	106	CBS_pair_25 The CBS domain, named after human CBS,	97.82
cd04610	107	CBS_pair_ParBc_assoc This cd contains two tandem r	97.82
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	97.81
TIGR00400	449	mgtE Mg2+ transporter (mgtE). This family of proka	97.76
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.71
TIGR01137	454	cysta_beta cystathionine beta-synthase. Members of	97.71
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	97.58
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	97.49
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	97.43
PRK11573	413	hypothetical protein; Provisional	97.27
COG1253	429	TlyC Hemolysins and related proteins containing CB	97.06
cd04592	133	CBS_pair_EriC_assoc_euk This cd contains two tande	96.97
KOG1764	381	consensus 5'-AMP-activated protein kinase, gamma s	96.96
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.65
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	96.52
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	96.34
TIGR03415	382	ABC_choXWV_ATP choline ABC transporter, ATP-bindin	96.33
COG2239	451	MgtE Mg/Co/Ni transporter MgtE (contains CBS domai	96.26
COG4536	423	CorB Putative Mg2+ and Co2+ transporter CorB [Inor	96.08
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	95.2
KOG0476	931	consensus Cl- channel CLC-2 and related proteins (	94.65
COG4175	386	ProV ABC-type proline/glycine betaine transport sy	94.62
KOG2550	503	consensus IMP dehydrogenase/GMP reductase [Nucleot	94.56
PRK10070	400	glycine betaine transporter ATP-binding subunit; P	94.56
COG1125	309	OpuBA ABC-type proline/glycine betaine transport s	94.12
KOG0475	696	consensus Cl- channel CLC-3 and related proteins (	94.05
KOG0474	762	consensus Cl- channel CLC-7 and related proteins (	93.96
COG4535	293	CorC Putative Mg2+ and Co2+ transporter CorC [Inor	93.12
TIGR01186	363	proV glycine betaine/L-proline transport ATP bindi	91.08

>PF00571 CBS: CBS domain CBS domain web page

Probab=99.40  E-value=2e-12  Score=75.35  Aligned_cols=56  Identities=27%  Similarity=0.450  Sum_probs=52.0

Q ss_pred             HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      |+++|.++       ++++++++++.++++.|.+++++++||+|  ++++++|++|.+|+++++.
T Consensus         1 v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~d--~~~~~~G~is~~dl~~~l~   56 (57)
T PF00571_consen    1 VGDIMTPP-------PITVSPDDSLEEALEIMRKNGISRLPVVD--EDGKLVGIISRSDLLKALL   56 (57)
T ss_dssp             HHHHSBSS-------SEEEETTSBHHHHHHHHHHHTSSEEEEES--TTSBEEEEEEHHHHHHHHH
T ss_pred             CeECCcCC-------CEEEcCcCcHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEHHHHHhhhh
Confidence            56788875       89999999999999999999999999999  7899999999999999875

Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.99  E-value=1.6e-09  Score=81.22  Aligned_cols=62  Identities=29%  Similarity=0.494  Sum_probs=57.3

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      |-....|+|+|+++       ++++..|+.+.||+++|..++++.|.|+|  .+|+++||||+.|++..++
T Consensus       230 g~~~~kV~~~M~k~-------vitI~eDe~i~dAir~M~~~nVGRLlV~d--s~gkpvGiITrTDIL~~ia  291 (294)
T COG2524         230 GNLDAKVSDYMRKN-------VITINEDEDIYDAIRLMNKNNVGRLLVTD--SNGKPVGIITRTDILTRIA  291 (294)
T ss_pred             CCccccHHHHhccC-------CceEcCchhHHHHHHHHHhcCcceEEEEc--cCCcEEEEEehHHHHHHhh
Confidence            33467899999997       99999999999999999999999999998  8999999999999998864

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.94  E-value=2.4e-09  Score=69.60  Aligned_cols=55  Identities=16%  Similarity=0.278  Sum_probs=50.2

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.+|+++|.+++.+.+||+|  ++|+++|+||.+|+++
T Consensus        56 ~~v~~~~~~~-------~~~v~~~~~l~~al~~m~~~~~~~lpVvd--~~~~~~Giit~~di~~  110 (111)
T cd04603          56 LKVCEVYIVP-------VPIVYCDSKVTDLLRIFRETEPPVVAVVD--KEGKLVGTIYERELLR  110 (111)
T ss_pred             cChhheeecC-------CcEECCCCcHHHHHHHHHHcCCCeEEEEc--CCCeEEEEEEhHHhhc
Confidence            4688998765       78999999999999999999999999998  6799999999999975

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.85  E-value=1.1e-08  Score=66.66  Aligned_cols=56  Identities=20%  Similarity=0.391  Sum_probs=51.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.+|++.|.+++.+.+||++  ++|+++|+||.+|++.
T Consensus        58 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~~Gvi~~~dl~~  113 (114)
T cd04619          58 TAPVENVMTRA-------VVSCRPGDLLHDVWQVMKQRGLKNIPVVD--ENARPLGVLNARDALK  113 (114)
T ss_pred             cCCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeEEEEC--CCCcEEEEEEhHhhcc
Confidence            46789999875       78999999999999999999999999998  6789999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.82  E-value=9e-09  Score=67.78  Aligned_cols=55  Identities=27%  Similarity=0.421  Sum_probs=50.3

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|.+.       +.++.+++++.++++.|.+++.+.+||+|  ++|+++|+||.+|+..
T Consensus        58 ~~v~dim~~~-------~~~v~~~~~l~~a~~~~~~~~~~~lpVvd--~~~~l~Givt~~dl~~  112 (113)
T cd04597          58 PRVRDVINRK-------PVTARPNDPLREALNLMHEHNIRTLPVVD--DDGTPAGIITLLDLAE  112 (113)
T ss_pred             hhHHHhcCCC-------CCEECCcCcHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHhhc
Confidence            5688999875       78999999999999999999999999998  7899999999999864

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.79  E-value=1e-08  Score=72.18  Aligned_cols=58  Identities=28%  Similarity=0.412  Sum_probs=52.6

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++..+|+.+       ++.|.|++++.+|+++|.+++++++||++   +++++|-||++++.++..
T Consensus        64 ~ita~~iM~sp-------vv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~~k~VGsItE~~iv~~~l  121 (187)
T COG3620          64 RITAKTIMHSP-------VVSVSPDDSISDVVNLMRDKGISQLPVIE---EDKVVGSITENDIVRALL  121 (187)
T ss_pred             eEeHhhhccCC-------eeEECchhhHHHHHHHHHHcCCccCceee---CCeeeeeecHHHHHHHHh
Confidence            45678888875       99999999999999999999999999997   699999999999998763

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.79  E-value=1.1e-08  Score=78.34  Aligned_cols=101  Identities=15%  Similarity=0.214  Sum_probs=75.9

Q ss_pred             HhhcCcchHHHHhccccccccCccceeeeeccccchhhhhhcCC-CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHH
Q 033339            8 FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGF-ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKS   86 (121)
Q Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~   86 (121)
                      +++|+...+...-++-+.+|+.+..++...+.   +...+...| ...+++.+|+.+       +.++.++++..+.+-.
T Consensus       271 l~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~---~~p~qrlr~~~~~~vk~imt~~-------v~tv~pdtpa~~lvp~  340 (382)
T COG3448         271 LQEHRIKALPVLDEHRRLVGIVTQRDLLKHAR---PSPFQRLRFLRPPTVKGIMTTP-------VVTVRPDTPAVELVPR  340 (382)
T ss_pred             HHHcCcccccccccccceeeeeeHHHHhhccC---cchHHHhhccCCCcccccccCc-------ceeecCCCcHHHHHHH
Confidence            45555555555666677777776666543322   122222222 456788888875       8999999999999999


Q ss_pred             HHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           87 MTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        87 m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +.+.+..++||+|  ++|+++||||.+|++.+++
T Consensus       341 lad~g~H~lpvld--~~g~lvGIvsQtDliaal~  372 (382)
T COG3448         341 LADEGLHALPVLD--AAGKLVGIVSQTDLIAALY  372 (382)
T ss_pred             hhcCCcceeeEEc--CCCcEEEEeeHHHHHHHHH
Confidence            9999999999999  8999999999999998764

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.78  E-value=1.6e-08  Score=64.93  Aligned_cols=45  Identities=20%  Similarity=0.295  Sum_probs=42.0

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFK  117 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~  117 (121)
                      +.++.+++++.+|+++|.+++++.+||++  ++ |+++|+||.+|++.
T Consensus        52 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~~~giit~~d~~~   97 (98)
T cd04618          52 LVSIHPERSLFDAALLLLKNKIHRLPVID--PSTGTGLYILTSRRILK   97 (98)
T ss_pred             eEEeCCCCcHHHHHHHHHHCCCCEeeEEE--CCCCCceEEeehhhhhc
Confidence            57899999999999999999999999998  66 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.75  E-value=3.2e-08  Score=64.09  Aligned_cols=56  Identities=18%  Similarity=0.365  Sum_probs=49.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCC--CcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTD--DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~--~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       ++++.++  +++.+|+++|.+++.+.+||++  ++|+++|+||.+|+++
T Consensus        57 ~~~i~~~~~~~-------~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd--~~~~~~Gvit~~dl~~  114 (115)
T cd04620          57 DLPIGEVMTQP-------VVTLQESEIQDIFTALSLFRQHQIRHLPVLD--DQGQLIGLVTAESIRQ  114 (115)
T ss_pred             ccCHHHhcCCC-------cEEEecccccCHHHHHHHHHHhCCceEEEEc--CCCCEEEEEEhHHhhc
Confidence            35788998764       7788877  7899999999999999999998  7799999999999986

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.74  E-value=3.2e-08  Score=64.84  Aligned_cols=57  Identities=21%  Similarity=0.352  Sum_probs=51.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|...       +.++.+++++.+++++|.+++.+.+||++  ++|+++|+||.+|++++
T Consensus        68 ~~~i~~~~~~~-------~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~--~~g~~~Gvit~~di~~~  124 (124)
T cd04600          68 PETVGDIMSPP-------VVTVRPDTPIAELVPLLADGGHHHVPVVD--EDRRLVGIVTQTDLIAA  124 (124)
T ss_pred             cccHHHhccCC-------CeeeCCCCcHHHHHHHHHhcCCCceeEEc--CCCCEEEEEEhHHhhcC
Confidence            34688998765       88999999999999999999999999998  78999999999999753

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=3.5e-08  Score=64.59  Aligned_cols=59  Identities=27%  Similarity=0.362  Sum_probs=50.4

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC---CeeEEEEeHHHHHH
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERGIFK  117 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~---~~lvGiVt~~Di~~  117 (121)
                      ...++.++|....     ++.++.+++++.+++++|.++++..+||+|  ++   ++++|+||.+|+.+
T Consensus        56 ~~~~~~~~~~~~~-----~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd--~~~~~~~l~Gvit~~~l~~  117 (118)
T cd04617          56 QKVPVGVIMTRMP-----NITTTTPEESVLEAAKKLIEHQVDSLPVVE--KVDEGLEVIGRITKTNITK  117 (118)
T ss_pred             cCCCHHHHhCCCC-----CcEEECCCCcHHHHHHHHHHcCCCEeeEEe--CCCccceEEEEEEhhheec
Confidence            3567889997511     278999999999999999999999999998  55   69999999999865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.74  E-value=4.9e-08  Score=62.82  Aligned_cols=55  Identities=20%  Similarity=0.349  Sum_probs=49.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.+|+++|.+++.+.+||++   +|+++|+||.+|+++
T Consensus        57 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~---~~~~~Gvvt~~dl~~  111 (112)
T cd04625          57 DTTVRAIMNPE-------PIVASPDDSIDEVRRLMVERHLRYLPVLD---GGTLLGVISFHDVAK  111 (112)
T ss_pred             cCCHHHHhCCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEEE---CCEEEEEEEHHHhhc
Confidence            35799999765       78999999999999999999999999997   589999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]

Probab=98.73  E-value=2.5e-08  Score=74.91  Aligned_cols=59  Identities=27%  Similarity=0.386  Sum_probs=54.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhhC
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN  121 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~~  121 (121)
                      ..++.++|+++       ++++.+++|+.+|.++|.++++++.||+|   +++++|++|.+|+..++++
T Consensus       171 k~~V~~~~s~~-------~i~v~~d~tl~eaak~f~~~~i~GaPVvd---~dk~vGiit~~dI~~aia~  229 (294)
T COG2524         171 KEKVKNLMSKK-------LITVRPDDTLREAAKLFYEKGIRGAPVVD---DDKIVGIITLSDIAKAIAN  229 (294)
T ss_pred             cchhhhhccCC-------ceEecCCccHHHHHHHHHHcCccCCceec---CCceEEEEEHHHHHHHHHc
Confidence            46788999886       89999999999999999999999999997   5599999999999999864

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.72  E-value=5.1e-08  Score=63.23  Aligned_cols=56  Identities=21%  Similarity=0.327  Sum_probs=50.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|..+       +.++.+++++.+|++.|.+++...+||++  + |+++|+||.+|++++
T Consensus        59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~-~~~~Gvi~~~dl~~~  114 (114)
T cd04630          59 RVNVYEIMTKP-------LISVSPDMDIKYCARLMERTNIRRAPVVE--N-NELIGIISLTDIFLA  114 (114)
T ss_pred             ccCHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCEeeEee--C-CEEEEEEEHHHhhcC
Confidence            35789999764       89999999999999999999999999998  5 999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.72  E-value=5.6e-08  Score=62.86  Aligned_cols=55  Identities=13%  Similarity=0.276  Sum_probs=50.2

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.++++.|.+++.+.+||++  ++|+++|+||.+|++.
T Consensus        58 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~di~~  112 (113)
T cd04607          58 DPVSEVMNRN-------PITAKVGSSREEILALMRERSIRHLPILD--EEGRVVGLATLDDLLS  112 (113)
T ss_pred             CCHHHhhcCC-------CEEEcCCCCHHHHHHHHHHCCCCEEEEEC--CCCCEEEEEEhHHhcc
Confidence            5688999765       78999999999999999999999999998  7899999999999874

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.71  E-value=5.1e-08  Score=63.88  Aligned_cols=46  Identities=33%  Similarity=0.456  Sum_probs=43.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++.+++++.++++.|.+++.+.+||++  ++|+++|+||.+|+++
T Consensus        74 ~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~~~~~Givt~~di~~  119 (120)
T cd04641          74 GVRTCSPDDCLRTIFDLIVKARVHRLVVVD--ENKRVEGIISLSDILQ  119 (120)
T ss_pred             CCeEEcCCCcHHHHHHHHHhcCccEEEEEC--CCCCEEEEEEHHHhhc
Confidence            478999999999999999999999999998  6799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.69  E-value=6.6e-08  Score=63.61  Aligned_cols=45  Identities=20%  Similarity=0.304  Sum_probs=42.3

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF  116 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~  116 (121)
                      ++.++.+++++.+|++.|.+++.+.+||++  ++++++|+||.+|+.
T Consensus        77 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~~vGiit~~di~  121 (123)
T cd04627          77 DVISINGDQPLIDALHLMHNEGISSVAVVD--NQGNLIGNISVTDVR  121 (123)
T ss_pred             CceEeCCCCCHHHHHHHHHHcCCceEEEEC--CCCcEEEEEeHHHhh
Confidence            388999999999999999999999999998  779999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.69  E-value=7.6e-08  Score=61.84  Aligned_cols=56  Identities=23%  Similarity=0.366  Sum_probs=50.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.++++.|.+++...+||++  ++|+++|++|.+|+++
T Consensus        52 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~G~it~~di~~  107 (108)
T cd04596          52 DTTIEKVMTKN-------PITVNPKTSVASVAHMMIWEGIEMLPVVD--DNKKLLGIISRQDVLK  107 (108)
T ss_pred             cccHHHHhcCC-------CeEECCCCCHHHHHHHHHHcCCCeeeEEc--CCCCEEEEEEHHHhhc
Confidence            35788998765       78999999999999999999999999998  7899999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.67  E-value=8.1e-08  Score=62.28  Aligned_cols=56  Identities=20%  Similarity=0.358  Sum_probs=49.8

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC--CeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ--KSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~--~~lvGiVt~~Di~~~  118 (121)
                      .++.++|...       +.++.+++++.+++++|.+++.+.+||++  ++  |+++|+||.+|++++
T Consensus        58 ~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd--~~~~~~~~Gvit~~di~~~  115 (115)
T cd04593          58 SAVDEVATPP-------LLTVHPDEPLAHALDRMASRGLRQLPVVD--RGNPGQVLGLLTRENVLLA  115 (115)
T ss_pred             ccHHHhccCC-------ceEECCCCCHHHHHHHHHHcCCceeeEEe--CCCCCeEEEEEEhHHhhcC
Confidence            4588888765       88999999999999999999999999998  55  799999999999763

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=98.66  E-value=1.1e-07  Score=61.22  Aligned_cols=57  Identities=26%  Similarity=0.394  Sum_probs=51.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|...       +.++.+++++.++++.|.+++.+.+||++  ++++++|+||.+|++++
T Consensus        52 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~dll~~  108 (109)
T cd04606          52 DTPVSDIMDTD-------VISVSADDDQEEVARLFEKYDLLALPVVD--EEGRLVGIITVDDVIDV  108 (109)
T ss_pred             cchHHHHhCCC-------CeEEcCCCCHHHHHHHHHHcCCceeeeEC--CCCcEEEEEEhHHhhhh
Confidence            45688888765       88999999999999999999999999998  78999999999999875

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=1.2e-07  Score=60.91  Aligned_cols=47  Identities=11%  Similarity=0.157  Sum_probs=43.3

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ++++++++++.+|.+.|.+++++++||++  ++ |+++|+||.+|+.+.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~~~~~~Givt~~Dl~~~~   50 (98)
T cd04618           3 LVVFDTKLPVKKAFNALVENGIRSAPLWD--SRKQQFVGMLTITDFILIL   50 (98)
T ss_pred             EEEECCCCcHHHHHHHHHHcCCceEEEEe--CCCCEEEEEEEHHHHhhhe
Confidence            78999999999999999999999999998  54 8999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.66  E-value=9.8e-08  Score=62.56  Aligned_cols=56  Identities=34%  Similarity=0.548  Sum_probs=50.3

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .++.++|.+.       ++++.+++++.++++.|.+.+.+.+||++  ++|+++|+||.+|++++
T Consensus        70 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~~Gvit~~di~~~  125 (125)
T cd04631          70 EPVRSIMTRN-------VITITPDDSIKDAAELMLEKRVGGLPVVD--DDGKLVGIVTERDLLKA  125 (125)
T ss_pred             cCHHHHhcCC-------ceEeCCCCcHHHHHHHHHHcCCceEEEEc--CCCcEEEEEEHHHhhcC
Confidence            4688888764       89999999999999999999999999998  66999999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.65  E-value=9.5e-08  Score=73.60  Aligned_cols=56  Identities=14%  Similarity=0.321  Sum_probs=51.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|+++       +.++.+++++.+|+++|.+++++.+||++   +++++|+||.+|++++
T Consensus       268 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVv~---~~~lvGiit~~dil~~  323 (326)
T PRK10892        268 QASIADVMTPG-------GIRVRPGILAVDALNLMQSRHITSVLVAD---GDHLLGVLHMHDLLRA  323 (326)
T ss_pred             cCCHHHhcCCC-------CEEECCCCCHHHHHHHHHHCCCcEEEEee---CCEEEEEEEhHHhHhc
Confidence            46799999875       89999999999999999999999999996   6899999999999875

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.64  E-value=1.1e-07  Score=61.68  Aligned_cols=56  Identities=30%  Similarity=0.488  Sum_probs=50.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|.+.       +.++.+++++.++++.|.+.+.+.+||++  ++|+++|+||..|+++
T Consensus        66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvvt~~di~~  121 (122)
T cd04585          66 KIKVSDIMTRD-------PITVSPDASVEEAAELMLERKISGLPVVD--DQGRLVGIITESDLFR  121 (122)
T ss_pred             ccCHHHhccCC-------CeEeCCCCcHHHHHHHHHHcCCCceeEEC--CCCcEEEEEEHHHhhh
Confidence            35688888775       88999999999999999999999999998  6799999999999986

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.64  E-value=1.2e-07  Score=60.89  Aligned_cols=55  Identities=16%  Similarity=0.300  Sum_probs=50.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       ..++.+++++.+++++|.+++.+.+||++  ++++++|+||..|+++
T Consensus        59 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~iG~it~~di~~  113 (114)
T cd04604          59 LPVADVMTRN-------PKTIDPDALAAEALELMEENKITALPVVD--DNGRPVGVLHIHDLLR  113 (114)
T ss_pred             CCHHHhhccC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEC--CCCCEEEEEEHHHhhc
Confidence            4789999875       78999999999999999999999999998  6899999999999975

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=98.64  E-value=1.3e-07  Score=60.29  Aligned_cols=55  Identities=24%  Similarity=0.455  Sum_probs=49.8

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..+.++|...       +.++.+++++.++++.|.+++...+||++  ++|+++|+++..|+++
T Consensus        52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~g~~~Gvi~~~di~~  106 (107)
T cd04610          52 ETVEEIMSKD-------LVVAVPEMDIMDAARVMFRTGISKLPVVD--ENNNLVGIITNTDVIR  106 (107)
T ss_pred             ccHHHhCCCC-------CeEECCCCCHHHHHHHHHHhCCCeEeEEC--CCCeEEEEEEHHHhhc
Confidence            4688888764       78899999999999999999999999998  7899999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.64  E-value=1.1e-07  Score=77.72  Aligned_cols=59  Identities=12%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|++.+     +++++.+++++.+|+++|.+++++.+||+|  ++++++|+||.+|+++.
T Consensus       160 ~~~V~dIMt~~~-----~~itv~~d~~l~eAl~lM~e~~i~~LPVVD--~~g~LvGIIT~~Dilk~  218 (502)
T PRK07107        160 DTKVKDFMTPFE-----KLVTANEGTTLKEANDIIWDHKLNTLPIVD--KNGNLVYLVFRKDYDSH  218 (502)
T ss_pred             CCCHHHHhCCCC-----CeEEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEhHHHHhc
Confidence            568999999632     288999999999999999999999999998  78999999999999875

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.63  E-value=8.2e-08  Score=61.78  Aligned_cols=55  Identities=22%  Similarity=0.326  Sum_probs=49.9

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.++++.|.+++.+.+||++  ++++++|+||.+|++.
T Consensus        58 ~~v~~i~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~~Gvvs~~dl~~  112 (113)
T cd04587          58 TLVERVMTPN-------PVCATSDTPVLEALHLMVQGKFRHLPVVD--KSGQVVGLLDVTKLTH  112 (113)
T ss_pred             CCHHHhcCCC-------CeEEcCCCCHHHHHHHHHHcCCCcccEEC--CCCCEEEEEEHHHhcc
Confidence            5788998764       78999999999999999999999999998  6799999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=98.63  E-value=1.7e-07  Score=75.03  Aligned_cols=69  Identities=26%  Similarity=0.366  Sum_probs=59.5

Q ss_pred             chhhhhhcCC------------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEE
Q 033339           42 SSARMEEHGF------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI  109 (121)
Q Consensus        42 ~~~~~~~~g~------------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGi  109 (121)
                      .++|+...|+            ...+++++|.++       +.++.+++++.++++.|.+++++.+||+|  ++++++|+
T Consensus       311 ~~~w~~~~~~~~~~~~~~~~~l~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd--~~~~~~Gi  381 (454)
T TIGR01137       311 NDEWMKDNGFLDDEVLTVFDVLKNATVKDLHLPA-------PVTVHPTETVGDAIEILREYGFDQLPVVT--EAGKVLGS  381 (454)
T ss_pred             ChHHHHhcCCcccccccHHHHhccCCHHHhCcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEE
Confidence            4679888776            345788888765       89999999999999999999999999998  77999999


Q ss_pred             EeHHHHHHHh
Q 033339          110 ITERGIFKAC  119 (121)
Q Consensus       110 Vt~~Di~~~~  119 (121)
                      ||.+|+++.+
T Consensus       382 vt~~dl~~~~  391 (454)
T TIGR01137       382 VTLRELLSAL  391 (454)
T ss_pred             EEHHHHHHHH
Confidence            9999998754

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.63  E-value=1.2e-07  Score=72.81  Aligned_cols=57  Identities=18%  Similarity=0.268  Sum_probs=52.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|.++       +.++.+++++.+|++.|.+++...+||+|  ++|+++|+||.+|++++
T Consensus       262 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~lvGvIt~~di~~~  318 (321)
T PRK11543        262 TTPVNEAMTRG-------GTTLQAQSRAIDAKEILMKRKITAAPVVD--ENGKLTGAINLQDFYQA  318 (321)
T ss_pred             CCcHHHhcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEHHHHHhc
Confidence            45688999875       78999999999999999999999999998  77899999999999875

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.62  E-value=1.5e-07  Score=61.45  Aligned_cols=57  Identities=33%  Similarity=0.550  Sum_probs=50.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|..+       +.++.+++++.++++.|.+++.+.+||++  ++|+++|++|.+|++++
T Consensus        66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~g~~~Gvit~~dl~~~  122 (122)
T cd04635          66 SPTVEKIMSTP-------VYSVTPDDSIATAVELMLEHDIGRLPVVN--EKDQLVGIVDRHDVLKA  122 (122)
T ss_pred             cCcHHHHhcCC-------CeeECCCCCHHHHHHHHHHcCCCeeeEEc--CCCcEEEEEEhHHhhcC
Confidence            45688888764       88999999999999999999999999998  67999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.61  E-value=1.8e-07  Score=61.03  Aligned_cols=56  Identities=25%  Similarity=0.506  Sum_probs=50.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.++++.|.+++.+.+||++  ++|+++|++|..|+++
T Consensus        66 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~dl~~  121 (122)
T cd04803          66 DVPVAEVMKTD-------VLTVTPDTPLREAAEIMVENKIGCLPVVD--DKGTLVGIITRSDFLR  121 (122)
T ss_pred             CcCHHHhhCCC-------CeEeCCCCcHHHHHHHHHHcCCCeEEEEc--CCCCEEEEEEHHHhhc
Confidence            45788888765       88999999999999999999999999998  6689999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.61  E-value=1.4e-07  Score=60.78  Aligned_cols=55  Identities=24%  Similarity=0.408  Sum_probs=49.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|..+       +.++.+++++.++++.|.+++.+.+||++  + |+++|+||.+|+++
T Consensus        59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~Gvit~~di~~  113 (114)
T cd04629          59 VATVRDIMTTE-------VLTVSPDDSIVDLAQLMLKAKPKRYPVVD--D-GKLVGQISRRDVLR  113 (114)
T ss_pred             CccHHHHhccC-------ceEECCCCcHHHHHHHHHHhCCCccCEEE--C-CEEEEEEEHHHHhc
Confidence            45788998765       78999999999999999999999999998  5 89999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.61  E-value=2.2e-07  Score=60.82  Aligned_cols=48  Identities=17%  Similarity=0.276  Sum_probs=44.3

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.+|++.|.+++.+.+||++  ++|+++|++|.+|++.+.
T Consensus         2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~--~~~~~~Giv~~~dl~~~~   49 (120)
T cd04641           2 NIATARPDTPLIDVLDMLVERRVSALPIVD--ENGKVVDVYSRFDVINLA   49 (120)
T ss_pred             CcEEEcCCCCHHHHHHHHHHcCCCeeeEEC--CCCeEEEEEeHHHHHHHH
Confidence            378999999999999999999999999998  789999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=1.6e-07  Score=60.31  Aligned_cols=56  Identities=14%  Similarity=0.253  Sum_probs=50.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.+|++.|.+++...+||++  ++|+++|++|.+|+.+
T Consensus        55 ~~~v~~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~G~it~~dl~~  110 (111)
T cd04639          55 DAPVRGVMRRD-------FPTVSPSATLDAVLRLMQQGGAPAVPVVD--GSGRLVGLVTLENVGE  110 (111)
T ss_pred             CCcHHHHhcCC-------CcEECCCCcHHHHHHHHHhcCCceeeEEc--CCCCEEEEEEHHHhhc
Confidence            35788998765       88999999999999999999999999998  6699999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.60  E-value=1.8e-07  Score=61.85  Aligned_cols=46  Identities=24%  Similarity=0.400  Sum_probs=43.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++.+++++.+|+++|.+++.+.+||++  ++++++|+||.+|+++
T Consensus        80 ~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd--~~~~~~Giit~~dil~  125 (126)
T cd04642          80 PLITCTPSSTLKEVITKLVANKVHRVWVVD--EEGKPIGVITLTDIIS  125 (126)
T ss_pred             CCeEECCCCcHHHHHHHHHHhCCcEEEEEC--CCCCEEEEEEHHHHhc
Confidence            388999999999999999999999999998  6799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.59  E-value=1.8e-07  Score=59.54  Aligned_cols=54  Identities=22%  Similarity=0.232  Sum_probs=48.4

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++|.+.       +.++.+++++.++++.|.+++.+.+||++  ++++++|+||.+|+++
T Consensus        52 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvi~~~~l~~  105 (106)
T cd04582          52 CCGDHAEPF-------KVTVSVDDDLRIVLSRMFAHDMSWLPCVD--EDGRYVGEVTQRSIAD  105 (106)
T ss_pred             chhhhcccC-------CEEECCCCCHHHHHHHHHHCCCCeeeEEC--CCCcEEEEEEHHHhhc
Confidence            577888664       67899999999999999999999999998  7789999999999875

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.59  E-value=1.3e-07  Score=61.26  Aligned_cols=58  Identities=19%  Similarity=0.432  Sum_probs=49.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|....     ++.++.+++++.+|++.|.+++.+.+||++  ++++++|++|.+|+++
T Consensus        56 ~~~v~~~~~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~--~~~~~~Gvl~~~di~~  113 (114)
T cd04801          56 QTTVIQVMTPAA-----KLVTVLSEESLAEVLKLLEEQGLDELAVVE--DSGQVIGLITEADLLR  113 (114)
T ss_pred             ccchhhhhcccc-----cceEECCCCcHHHHHHHHHHCCCCeeEEEc--CCCcEEEEEeccceec
Confidence            457888887531     157899999999999999999999999998  6789999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=2.5e-07  Score=59.54  Aligned_cols=57  Identities=21%  Similarity=0.432  Sum_probs=50.9

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ...++.++|...       +.++.+++++.++++.|.+++...+||++  ++|+++|++|..|+++
T Consensus        56 ~~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~g~~~Gvvt~~dl~~  112 (113)
T cd04615          56 KDAKVREVMNSP-------VITIDANDSIAKARWLMSNNNISRLPVLD--DKGKVGGIVTEDDILR  112 (113)
T ss_pred             cCCcHHHhccCC-------ceEECCCCcHHHHHHHHHHcCCCeeeEEC--CCCeEEEEEEHHHhhc
Confidence            346788998765       88999999999999999999999999998  7789999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.59  E-value=1.5e-07  Score=59.94  Aligned_cols=57  Identities=14%  Similarity=0.346  Sum_probs=48.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .+..|++...      .+.++.+++++.+|+++|.+++.+.+||++  ++|+++|+||.+|++++
T Consensus        40 v~~~dl~~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~~~~Giit~~di~~~   96 (96)
T cd04614          40 ITERDLIAKS------EVVTATKRTTVSECAQKMKRNRIEQIPIIN--GNDKLIGLLRDHDLLKP   96 (96)
T ss_pred             EEHHHHhcCC------CcEEecCCCCHHHHHHHHHHhCCCeeeEEC--CCCcEEEEEEHHHhhcC
Confidence            3556666543      278999999999999999999999999998  67999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.58  E-value=2.2e-07  Score=59.24  Aligned_cols=55  Identities=18%  Similarity=0.305  Sum_probs=49.9

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.++++.|.+++...+||++  ++|+++|++|.+|+++
T Consensus        54 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~vv~--~~g~~~Gvit~~~l~~  108 (109)
T cd04583          54 KSLEDIMLED-------VFTVQPDASLRDVLGLVLKRGPKYVPVVD--EDGKLVGLITRSSLVD  108 (109)
T ss_pred             CcHhHhhcCC-------ceEECCCCcHHHHHHHHHHcCCceeeEEC--CCCeEEEEEehHHhhc
Confidence            5688888765       78999999999999999999999999998  7899999999999874

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=98.58  E-value=2.1e-07  Score=75.05  Aligned_cols=59  Identities=15%  Similarity=0.231  Sum_probs=53.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|++.       ++++.+++++.+|++.|.+++...+||+|  ++|+++|+||.+|+++.+.
T Consensus       194 ~~~v~~im~~~-------~~~v~~~~~~~eal~~m~~~~~~~lpVVD--~~g~lvGiIt~~Dil~~l~  252 (449)
T TIGR00400       194 EEILSSIMRSS-------VFSIVGVNDQEEVARLIQKYDFLAVPVVD--NEGRLVGIVTVDDIIDVIQ  252 (449)
T ss_pred             CCcHHHHhCCC-------CeeECCCCCHHHHHHHHHHcCCCEEeEEc--CCCeEEEEEEHHHHHHHHH
Confidence            45789999875       78999999999999999999999999998  7899999999999998764

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.58  E-value=2.6e-07  Score=59.12  Aligned_cols=56  Identities=23%  Similarity=0.533  Sum_probs=50.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|.+.       ++++.+++++.++++.|.+.+.+.+||++  ++|+++|+||.+|+++
T Consensus        55 ~~~v~~~~~~~-------~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~--~~~~~~Gvi~~~di~~  110 (111)
T cd04611          55 QTPVGEVMSSP-------LLTVPADTSLYDARQLMREHGIRHLVVVD--DDGELLGLLSQTDLLQ  110 (111)
T ss_pred             CcCHHHhcCCC-------ceEECCCCCHHHHHHHHHHcCCeEEEEEC--CCCcEEEEEEhHHhhc
Confidence            46788998765       88999999999999999999999999998  6799999999999875

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.57  E-value=2.2e-07  Score=60.28  Aligned_cols=55  Identities=16%  Similarity=0.319  Sum_probs=48.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcC--CCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTT--DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~--~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .+++++|...       ..++..  ++++.++++.|.+++.+.+||++  ++++++|+||.+|+++
T Consensus        57 ~~v~~~~~~~-------~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~--~~~~~~Gvit~~di~~  113 (114)
T cd04602          57 TPLSEVMTPR-------EVLVVAPTGITLEEANEILRESKKGKLPIVN--DDGELVALVTRSDLKK  113 (114)
T ss_pred             CCHHHhcCCC-------ceEEECCCCCCHHHHHHHHHhcCCCceeEEC--CCCeEEEEEEHHHhhc
Confidence            4688999775       556655  99999999999999999999998  7899999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.57  E-value=2.9e-07  Score=62.15  Aligned_cols=55  Identities=29%  Similarity=0.473  Sum_probs=49.6

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|.+.       +..+.+++++.++++.|.+++.+.+||++  + |+++|+||.+|+++
T Consensus        80 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~-~~~~Gvit~~di~~  134 (135)
T cd04621          80 PLVAEDIMTEE-------IITVSPNDDVVDAAKLMLEANISGLPVVD--N-DNIVGVITKTDICR  134 (135)
T ss_pred             cccHHHhcCCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEEe--C-CEEEEEEEHHHHhh
Confidence            34789999765       78999999999999999999999999997  4 89999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.57  E-value=2.3e-07  Score=61.35  Aligned_cols=57  Identities=26%  Similarity=0.518  Sum_probs=49.4

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|..+       ++++.+++++.++++.|.+.+...+||++++++++++|+||.+|+++
T Consensus        71 ~~~~~~~~~~-------~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~  127 (128)
T cd04632          71 LPVYDAMSSP-------VITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR  127 (128)
T ss_pred             CcHHHHhcCC-------CceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence            4688888765       88999999999999999999999999995224689999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.57  E-value=1.5e-07  Score=62.26  Aligned_cols=58  Identities=21%  Similarity=0.327  Sum_probs=47.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEE----cCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWC----TTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v----~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~  117 (121)
                      ..++.++|.+...     ...+    .+++++.++++.|.+++.+.+||+|  ++ |+++|+||.+|+++
T Consensus        63 ~~~v~~im~~~~~-----~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd--~~~~~~~G~it~~di~~  125 (126)
T cd04640          63 ELTVADVMTPKED-----LKALDLEELENASVGDVVETLKASGRQHALVVD--REHHQIRGIISTSDIAR  125 (126)
T ss_pred             heEHHHhcCchhh-----hccccHHHhccCcHHHHHHHHHHCCCceEEEEE--CCCCEEEEEEeHHHHhh
Confidence            4568999976511     2233    3688999999999999999999998  55 79999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK10892 D-arabinose 5-phosphate isomerase; Provisional

Probab=98.57  E-value=2.4e-07  Score=71.33  Aligned_cols=60  Identities=20%  Similarity=0.365  Sum_probs=51.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.+..     +++++++++++.+|++.|.+++.+.+||++  ++|+++|+||.+|+.+.+
T Consensus       201 ~~~V~dim~~~~-----~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd--~~g~lvGivt~~Dl~~~~  260 (326)
T PRK10892        201 LLRVSDIMHTGD-----EIPHVSKTASLRDALLEITRKNLGMTVICD--DNMKIEGIFTDGDLRRVF  260 (326)
T ss_pred             cCcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHhcCCCeEEEEc--CCCcEEEEEecHHHHHHH
Confidence            346899998611     289999999999999999999999989988  789999999999998654

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.57  E-value=7.3e-08  Score=64.16  Aligned_cols=58  Identities=17%  Similarity=0.227  Sum_probs=49.6

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHH---------hcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT---------QHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~---------~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|.++       +.++.+++++.++.+++.         +.+...+||++  ++|+++||||.+|+++++
T Consensus        58 ~~~v~~im~~~-------~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~Givt~~Dl~~~~  124 (124)
T cd04608          58 SDPVSKALYKQ-------FKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKE--KQEKPIGIVTKIDLLSYI  124 (124)
T ss_pred             CCcHHHHhhcc-------ceecCCCCCHHHHHhhcccCCceEEEeccccccccccc--cccceEEEEehhHhhhhC
Confidence            57899999886       889999999999999653         33677888887  679999999999999763

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=98.56  E-value=3.5e-07  Score=62.15  Aligned_cols=47  Identities=19%  Similarity=0.295  Sum_probs=44.2

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++
T Consensus         3 ~~~v~~~~~l~ea~~~m~~~~~~~~~VvD--~~g~l~Givt~~Dl~~~~   49 (133)
T cd04592           3 YIKVSPTTTLKEALNLMLDEKQSCVLVVD--SDDFLEGILTLGDIQRFL   49 (133)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHHHHHH
Confidence            78999999999999999999999999998  789999999999998765

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.56  E-value=3.4e-07  Score=58.88  Aligned_cols=55  Identities=24%  Similarity=0.425  Sum_probs=49.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|.++       +..+.+++++.++++.|.+++.+.+||++   +++++|+||.+|+++
T Consensus        56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~---~~~~~G~it~~dl~~  110 (111)
T cd04589          56 STPVGEIATFP-------LITVDPDDFLFNALLLMTRHRIHRVVVRE---GGEVVGVLEQTDLLS  110 (111)
T ss_pred             CCCHHHHhCCC-------cEEECCCCcHHHHHHHHHHhCccEEEEee---CCEEEEEEEhHHhhc
Confidence            45788999765       88999999999999999999999999997   589999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]

Probab=98.56  E-value=9.1e-08  Score=73.41  Aligned_cols=57  Identities=30%  Similarity=0.488  Sum_probs=53.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..+..|||++.       ++++++++++.+|.+.|.++++..+||+|  ++.+++||||.+|+...
T Consensus       244 ~LtcadIMSrd-------Vvtv~~~ts~dhA~~ll~~H~ikaLPV~d--~~~rl~GiVt~~dl~~~  300 (382)
T COG3448         244 ELTCADIMSRD-------VVTVSTDTSIDHARKLLQEHRIKALPVLD--EHRRLVGIVTQRDLLKH  300 (382)
T ss_pred             cccHHHhcCcc-------ceecCCcCChHHHHHHHHHcCcccccccc--cccceeeeeeHHHHhhc
Confidence            56788999987       99999999999999999999999999999  88999999999999873

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.56  E-value=3.5e-07  Score=58.05  Aligned_cols=54  Identities=20%  Similarity=0.385  Sum_probs=48.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF  116 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~  116 (121)
                      ..++.++|...       +.++.+++++.++++.|.+++.+.+||++  + |+++|+||.+|++
T Consensus        50 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~G~it~~~l~  103 (105)
T cd04599          50 NRLVADAMTRE-------VVTISPEASLLEAKRLMEEKKIERLPVLR--E-RKLVGIITKGTIA  103 (105)
T ss_pred             cCCHHHHccCC-------CEEECCCCCHHHHHHHHHHcCCCEeeEEE--C-CEEEEEEEHHHhc
Confidence            35688898765       88999999999999999999999999998  5 9999999999986

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.56  E-value=2.2e-07  Score=59.96  Aligned_cols=55  Identities=24%  Similarity=0.332  Sum_probs=47.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|.+.       +.++.+++++.+|++.|.+.+  .+||++  ++++++|++|.+|++++
T Consensus        62 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~--~~~Vv~--~~~~~~Gvit~~dil~~  116 (116)
T cd04643          62 DLKVIDVMNTD-------VPVIIDDADIEEILHLLIDQP--FLPVVD--DDGIFIGIITRREILKA  116 (116)
T ss_pred             CCcHHHHhcCC-------CceecCCCCHHHHHHHHhcCC--ceeEEe--CCCeEEEEEEHHHhhcC
Confidence            35788898875       889999999999999998865  599998  78999999999999763

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.56  E-value=2.6e-07  Score=59.02  Aligned_cols=56  Identities=23%  Similarity=0.429  Sum_probs=48.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcC-CCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~-~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +..+.+ ++++.++++.|.+++.+.+||++  ++++++|+||.+|+++
T Consensus        53 ~~~v~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvi~~~dil~  109 (110)
T cd04601          53 DKPVSEVMTPE-------NLLTTVEGTSLEEALELLHEHKIEKLPVVD--DEGKLKGLITVKDIEK  109 (110)
T ss_pred             CCCHHHhcccC-------ceEEecCCCCHHHHHHHHHHhCCCeeeEEc--CCCCEEEEEEhhhhhc
Confidence            35788999764       455566 99999999999999999999998  6799999999999875

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.55  E-value=2.5e-07  Score=59.46  Aligned_cols=55  Identities=29%  Similarity=0.450  Sum_probs=49.7

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.++++.|.+++.+.+||++  ++|+++|++|..|+++
T Consensus        58 ~~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~it~~di~~  112 (113)
T cd04622          58 TTVGDVMTRG-------VVTVTEDDDVDEAARLMREHQVRRLPVVD--DDGRLVGIVSLGDLAR  112 (113)
T ss_pred             CCHHHhccCC-------ccEECCCCCHHHHHHHHHHcCCCeeeEEC--CCCcEEEEEEHHHhhc
Confidence            3588999775       78999999999999999999999999998  6799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.55  E-value=3.8e-07  Score=58.52  Aligned_cols=55  Identities=18%  Similarity=0.422  Sum_probs=50.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|.+.       +.++.+++++.++++.|.+++.+.+||++   +|+++|+||..|+++
T Consensus        55 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~---~~~~~Gvvt~~di~~  109 (110)
T cd04595          55 HAPVKDYMSTD-------VVTVPPDTPLSEVQELMVEHDIGRVPVVE---DGRLVGIVTRTDLLR  109 (110)
T ss_pred             cCcHHHHhcCC-------CEEECCCCcHHHHHHHHHHcCCCeeEEEe---CCEEEEEEEhHHhhc
Confidence            46789999875       78999999999999999999999999996   689999999999875

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.55  E-value=3.8e-07  Score=58.54  Aligned_cols=55  Identities=24%  Similarity=0.440  Sum_probs=49.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|..+       ++++.+++++.++++.|.+++.+.+||++  + |+++|++|.+|+++
T Consensus        56 ~~~i~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~Giit~~di~~  110 (111)
T cd04800          56 DTPVSEVMTAP-------PITIPPDATVFEALLLMLERGIHHLPVVD--D-GRLVGVISATDLLR  110 (111)
T ss_pred             cCCHHHHhCCC-------CeEECCCCcHHHHHHHHHHcCCCeeeEeE--C-CEEEEEEEHHHhhc
Confidence            35788998765       88999999999999999999999999998  5 99999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.55  E-value=3.4e-07  Score=58.68  Aligned_cols=55  Identities=31%  Similarity=0.619  Sum_probs=49.7

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.++++.|.+.+.+.+||++  ++|+++|+||.+|+++
T Consensus        55 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~i~~~dl~~  109 (110)
T cd04588          55 AKVKDVMTKD-------VITIDEDEQLYDAIRLMNKHNVGRLIVTD--DEGRPVGIITRTDILR  109 (110)
T ss_pred             cCHHHHhcCC-------ceEECCCCCHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEEhHHhhc
Confidence            5688888754       89999999999999999999999999998  6799999999999875

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.55  E-value=3.2e-07  Score=58.87  Aligned_cols=54  Identities=22%  Similarity=0.370  Sum_probs=47.2

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..+.++|. .       +.++.+++++.++++.|.+++.+.+||++  ++|+++|+||.+|+++
T Consensus        57 ~~~~~~~~-~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~Gvit~~di~~  110 (111)
T cd04590          57 LDLRDLLR-P-------PLFVPESTPLDDLLEEMRKERSHMAIVVD--EYGGTAGLVTLEDILE  110 (111)
T ss_pred             CCHHHHhc-C-------CeecCCCCcHHHHHHHHHhcCCcEEEEEE--CCCCEEEEeEHHHhhc
Confidence            35666664 3       78999999999999999999999999998  7799999999999864

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=3.6e-07  Score=58.76  Aligned_cols=54  Identities=20%  Similarity=0.499  Sum_probs=48.8

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|.+.       +.++.+++++.+|++.|.+++.+.+||++  + |+++|+||..|++.
T Consensus        57 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~G~it~~di~~  110 (111)
T cd04626          57 KKVFNIVSQD-------VFYVNEEDTIDEALDIMREKQIGRLPVVD--D-NKLIGVVRTKDILD  110 (111)
T ss_pred             CcHHHHhcCC-------cEEEcCCCcHHHHHHHHHHcCCCeeeEeE--C-CEEEEEEEhHHhcc
Confidence            4688888765       78999999999999999999999999998  5 89999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=3.8e-07  Score=58.38  Aligned_cols=55  Identities=31%  Similarity=0.422  Sum_probs=49.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.++++.|.+.+...+||++  + ++++|+||.+|+++
T Consensus        58 ~~~~~~~~~~~-------~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~--~-~~~~Gvit~~di~~  112 (113)
T cd04623          58 DTPVSEIMTRN-------VITVTPDDTVDEAMALMTERRFRHLPVVD--G-GKLVGIVSIGDVVK  112 (113)
T ss_pred             ccCHHHhcCCC-------cEEECCCCcHHHHHHHHHHcCCCEeEEEe--C-CEEEEEEEHHHhhc
Confidence            35788999764       88999999999999999999999999998  4 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.54  E-value=3.9e-07  Score=58.57  Aligned_cols=55  Identities=20%  Similarity=0.415  Sum_probs=48.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|.+.       +.++.+++++.+++++|.+++.+.+||++  ++ +++|+||.+|+++
T Consensus        57 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~-~~~Gvi~~~di~~  111 (112)
T cd04802          57 EVPVGEVMSTP-------LITIDPNASLNEAAKLMAKHGIKRLPVVD--DD-ELVGIVTTTDIVM  111 (112)
T ss_pred             cCCHHHhcCCC-------cEEECCCCCHHHHHHHHHHcCCCeeEEee--CC-EEEEEEEhhhhhc
Confidence            45788998764       88999999999999999999999999997  44 9999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.53  E-value=3.5e-07  Score=74.42  Aligned_cols=57  Identities=18%  Similarity=0.298  Sum_probs=52.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .++.++|+..       ++++.+++++.+|+++|.+++++.+||+|  ++++++|+||.+|+++..
T Consensus       148 ~~V~diMt~~-------~itV~~d~sL~eAl~lM~~~~i~~LPVVD--~~g~lvGIIT~~DIl~~~  204 (479)
T PRK07807        148 TQVRDVMSTD-------LVTLPAGTDPREAFDLLEAARVKLAPVVD--ADGRLVGVLTRTGALRAT  204 (479)
T ss_pred             CCHHHhccCC-------ceEECCCCcHHHHHHHHHhcCCCEEEEEc--CCCeEEEEEEHHHHHHHh
Confidence            5688999875       89999999999999999999999999998  789999999999999864

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.53  E-value=3e-07  Score=58.95  Aligned_cols=55  Identities=22%  Similarity=0.357  Sum_probs=50.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC-CCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~-~~~lvGiVt~~Di~~  117 (121)
                      .++.++|.+.       +.++.+++++.++++.|.+.+.+.+||++  + +++++|++|.+|++.
T Consensus        58 ~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~~Gvvt~~di~~  113 (114)
T cd04613          58 VVASDIMTKP-------PVVVYPEDSLEDALKKFEDSDYEQLPVVD--DDPGKLLGILSRSDLLS  113 (114)
T ss_pred             EEHHHhccCC-------CcEEcCCCCHHHHHHHHhhCCccEeeEEe--CCCCEEEEEEEhHHhhc
Confidence            6788999875       78999999999999999999999999998  6 689999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.52  E-value=3.1e-07  Score=75.38  Aligned_cols=58  Identities=22%  Similarity=0.310  Sum_probs=53.4

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .+++++|.++       +.++++++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+.+.+.
T Consensus        68 ~~V~dim~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~l~Givt~~di~~~~~  125 (546)
T PRK14869         68 PQVRDLEIDK-------PVTVSPDTSLKEAWNLMDENNVKTLPVVD--EEGKLLGLVSLSDLARAYM  125 (546)
T ss_pred             CcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCEEEEEEEHHHHHHHHH
Confidence            5889999875       89999999999999999999999999998  7899999999999988653

>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.52  E-value=3.9e-07  Score=58.03  Aligned_cols=47  Identities=30%  Similarity=0.331  Sum_probs=43.4

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +++++.+++++.+|++.|.+++++.+||+|  ++|+++|++|.+|+.+.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~~   48 (96)
T cd04614           2 NVPTVWEETPLPVAVRIMELANVKALPVLD--DDGKLSGIITERDLIAK   48 (96)
T ss_pred             CccEeCCCCcHHHHHHHHHHcCCCeEEEEC--CCCCEEEEEEHHHHhcC
Confidence            378999999999999999999999999998  78999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.52  E-value=3.9e-07  Score=58.79  Aligned_cols=53  Identities=23%  Similarity=0.411  Sum_probs=48.3

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHh-cCCCEEEEEeCCCCC-eeEEEEeHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-HNVGALVVVKPGEQK-SVAGIITERGIF  116 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~-~~~~~lpVvd~~~~~-~lvGiVt~~Di~  116 (121)
                      ++.++|..+       +.++.++.++.++.+.|.+ ++++.+||++  +++ +++|++|.+|++
T Consensus        63 ~v~~v~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~--~~~~~lvGivt~~di~  117 (117)
T COG0517          63 PVKEVMTKP-------VVTVDPDTPLEEALELMVERHKIRRLPVVD--DDGGKLVGIITLSDIL  117 (117)
T ss_pred             cHHHhccCC-------cEEECCCCCHHHHHHHHHHHcCcCeEEEEE--CCCCeEEEEEEHHHcC
Confidence            588999975       8999999999999999999 7999999998  675 999999999973

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional

Probab=98.52  E-value=3.7e-07  Score=74.99  Aligned_cols=57  Identities=23%  Similarity=0.315  Sum_probs=53.0

Q ss_pred             cccHHHHhh-hcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~-~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..+++++|+ ++       +.++++++++.++.+.|.++++..+||+|  ++|+++|+||.+|+++.
T Consensus       245 ~~~V~~iM~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~PVvd--~~g~lvGiit~~dl~~~  302 (546)
T PRK14869        245 SIPVSYIMTTED-------LVTFSKDDYLEDVKEVMLKSRYRSYPVVD--EDGKVVGVISRYHLLSP  302 (546)
T ss_pred             CCCHHHhccCCC-------cEEECCCCcHHHHHHHHHhcCCCceEEEc--CCCCEEEEEEHHHhhcc
Confidence            578999999 55       89999999999999999999999999999  78999999999999874

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.52  E-value=4.2e-07  Score=73.90  Aligned_cols=57  Identities=21%  Similarity=0.331  Sum_probs=52.7

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .++.++|+.+       ++++.+++++.+|+++|.+++++.+||+|  ++++++|+||.+|+++..
T Consensus       146 ~~V~dIMt~~-------litv~~~~sL~eAl~lM~~~~i~~LPVVD--~~g~LvGIIT~~DLl~~~  202 (475)
T TIGR01303       146 TQVRDIMSTD-------LVTAPADTEPRKAFDLLEHAPRDVAPLVD--ADGTLAGILTRTGALRAT  202 (475)
T ss_pred             CCHHHHccCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEHHHHHHHH
Confidence            5799999875       89999999999999999999999999998  789999999999999864

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.51  E-value=6.8e-07  Score=57.26  Aligned_cols=49  Identities=31%  Similarity=0.391  Sum_probs=44.5

Q ss_pred             CceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        69 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +++.++.+++++.++++.|.+++.+.+||++  ++|+++|++|.+|+++.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~~   50 (110)
T cd04605           2 RPVVTISEDASIKEAAKLMIEENINHLPVVD--EDGRLVGIVTSWDISKAV   50 (110)
T ss_pred             CCCEEECCCCCHHHHHHHHHhCCCceEEEEC--CCCcEEEEEeHHHHHHHH
Confidence            3588999999999999999999999999998  779999999999998654

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.51  E-value=3e-07  Score=61.46  Aligned_cols=56  Identities=16%  Similarity=0.374  Sum_probs=50.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|.++       +.++.+++++.++++.|.+++.+.+||++   +|+++|+||.+|++++
T Consensus        80 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd---~g~~~Gvit~~di~~~  135 (135)
T cd04586          80 GRKVADVMTRP-------VVTVGEDTPLAEVAELMEEHRIKRVPVVR---GGRLVGIVSRADLLRA  135 (135)
T ss_pred             CCCHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCccCEec---CCEEEEEEEhHhhhcC
Confidence            35688898765       88999999999999999999999999996   6899999999998753

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.51  E-value=3.7e-07  Score=59.47  Aligned_cols=55  Identities=29%  Similarity=0.485  Sum_probs=49.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.+++++|.+.+.+.+||++  + |+++|++|.+|+++
T Consensus        66 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~-~~~~Gvi~~~dl~~  120 (121)
T cd04633          66 NLPVSDIMTRP-------VITIEPDTSVSDVASLMLENNIGGLPVVD--D-GKLVGIVTRTDILR  120 (121)
T ss_pred             ccCHHHHccCC-------ceEECCCCcHHHHHHHHHHcCCCcccEEE--C-CEEEEEEEHHHhhc
Confidence            35788888764       78999999999999999999999999998  5 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.51  E-value=5.1e-07  Score=57.74  Aligned_cols=54  Identities=24%  Similarity=0.522  Sum_probs=49.1

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++|.+.       +.++.+++++.++++.|.+++.+.+||++  ++++++|+||..|+++
T Consensus        57 ~~~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~it~~di~~  110 (111)
T cd04612          57 LVGDVMTRD-------PVTASPDETLRDALKRMAERDIGRLPVVD--DSGRLVGIVSRSDLLR  110 (111)
T ss_pred             CHHHhccCC-------CeEECCCCCHHHHHHHHHhCCCCeeeEEc--CCCCEEEEEEHHHhhh
Confidence            677888765       89999999999999999999999999998  6799999999999875

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>smart00116 CBS Domain in cystathionine beta-synthase and other proteins

Probab=98.51  E-value=6.2e-07  Score=48.46  Aligned_cols=47  Identities=32%  Similarity=0.481  Sum_probs=43.0

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+++...+||++  ++++++|+++..++.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~g~i~~~~l~~~~   48 (49)
T smart00116        2 VVTVSPDTTLEEALELLREHGIRRLPVVD--EEGRLVGIVTRRDIIKAL   48 (49)
T ss_pred             ceEecCCCcHHHHHHHHHHhCCCcccEEC--CCCeEEEEEEHHHHHHhh
Confidence            57889999999999999999999999998  678999999999998764

Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=98.49  E-value=4.5e-07  Score=58.58  Aligned_cols=44  Identities=18%  Similarity=0.293  Sum_probs=41.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      +.++.+++++.++++.|.+++.+.+||++   +|+++|+||.+|+.+
T Consensus        61 ~~~v~~~~~l~~~~~~~~~~~~~~~pVv~---~~~~~Gvvt~~dl~~  104 (105)
T cd04591          61 PFTVSPRTSLEKVHQLFRKLGLRHLLVVD---EGRLVGIITRKDLLK  104 (105)
T ss_pred             CceECCCCcHHHHHHHHHHcCCCEEEEEE---CCeEEEEEEhhhhhc
Confidence            88999999999999999999999999995   789999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=5.9e-07  Score=57.70  Aligned_cols=56  Identities=25%  Similarity=0.440  Sum_probs=50.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ...+.++|...       ++++.+++++.++++.|.+++...+||++  ++|+++|++|.+|+++
T Consensus        56 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~--~~g~~~Gilt~~dl~~  111 (112)
T cd04624          56 DTPVSEIMTRD-------LVTVDPDEPVAEAAKLMRKNNIRHHLVVD--KGGELVGVISIRDLVR  111 (112)
T ss_pred             ccCHHHhccCC-------CEEECCCCcHHHHHHHHHHcCccEEEEEc--CCCcEEEEEEHHHhcc
Confidence            45788888765       88999999999999999999999999998  6799999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.49  E-value=5.1e-07  Score=58.97  Aligned_cols=55  Identities=25%  Similarity=0.363  Sum_probs=49.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       ++++.+++++.++++.|.+++...+||++  ++++++|++|.+|+++
T Consensus        67 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~vv~--~~~~~~Gvit~~dll~  121 (122)
T cd04637          67 RRAHQIMTRD-------PITVSPDTPVDEASKLLLENSISCLPVVD--ENGQLIGIITWKDLLK  121 (122)
T ss_pred             hHHHHhhcCC-------CeeeCCCCcHHHHHHHHHHcCCCeEeEEC--CCCCEEEEEEHHHhhh
Confidence            3577888765       88999999999999999999999999998  6799999999999985

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.49  E-value=4.8e-07  Score=57.86  Aligned_cols=54  Identities=19%  Similarity=0.201  Sum_probs=48.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       ..++.++.++.++++.|.+++...+||++   +|+++|++|.+|++.
T Consensus        50 ~~~~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~---~~~~iGvit~~dl~~  103 (104)
T cd04594          50 GDVVDYIVRG-------IPYVRLTSTAEEAWEVMMKNKTRWCPVVD---DGKFKGIVTLDSILD  103 (104)
T ss_pred             cchhhhhhcC-------CcEEcCCCCHHHHHHHHHHcCcceEEEEE---CCEEEEEEEHHHhhc
Confidence            3577788764       78999999999999999999999999997   589999999999875

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.47  E-value=6.4e-07  Score=59.63  Aligned_cols=53  Identities=26%  Similarity=0.475  Sum_probs=48.5

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++|.+.       +..+.+++++.++++.|.+++.+.+||++  + |+++|++|.+|+++
T Consensus        79 ~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~-~~~iGvit~~dl~~  131 (132)
T cd04636          79 KVEEIMTKK-------VITVDEDTTIEDVARIMSKKNIKRLPVVD--D-GKLVGIISRGDIIR  131 (132)
T ss_pred             CHHHhccCC-------ceEECCCCcHHHHHHHHHHCCCCeeEEEE--C-CEEEEEEEHHHhhc
Confidence            788888765       78999999999999999999999999998  5 99999999999975

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=98.47  E-value=7.6e-07  Score=72.93  Aligned_cols=60  Identities=13%  Similarity=0.257  Sum_probs=53.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|++..     +++++.+++++.+|+++|.+++++.+||+|  ++++++|+||++|++++.
T Consensus       162 ~~~V~eIMt~~~-----~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD--~~g~LvGvITr~DIlk~~  221 (505)
T PLN02274        162 ETKLSEVMTSDD-----DLVTAPAGIDLEEAEAVLKDSKKGKLPLVN--EDGELVDLVTRTDVKRVK  221 (505)
T ss_pred             CCcHHHHhccCC-----CcEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEHHHHHHHh
Confidence            467999998652     268999999999999999999999999998  789999999999999875

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.47  E-value=8.5e-07  Score=57.61  Aligned_cols=55  Identities=29%  Similarity=0.473  Sum_probs=49.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.++++.|.+++...+||++  + ++++|++|.+|+++
T Consensus        66 ~~~v~~~~~~~-------~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~-~~~~Gvv~~~di~~  120 (121)
T cd04584          66 KMPVKEIMTKD-------VITVHPLDTVEEAALLMREHRIGCLPVVE--D-GRLVGIITETDLLR  120 (121)
T ss_pred             CcCHHHHhhCC-------CeEECCCCcHHHHHHHHHHcCCCeEEEee--C-CEEEEEEEHHHhhc
Confidence            45788998875       78999999999999999999999999998  4 89999999999875

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.46  E-value=8.9e-07  Score=58.88  Aligned_cols=48  Identities=17%  Similarity=0.237  Sum_probs=44.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++++.|.++++.++||+|  ++++++|++|.+|+++.+
T Consensus         3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd--~~~~~~Gii~~~dl~~~~   50 (124)
T cd04608           3 APVTVLPTVTCAEAIEILKEKGFDQLPVVD--ESGKILGMVTLGNLLSSL   50 (124)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence            478999999999999999999999999998  779999999999998643

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten

>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain

Probab=98.46  E-value=8.4e-07  Score=56.79  Aligned_cols=55  Identities=35%  Similarity=0.514  Sum_probs=49.2

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|.++       +.++.+++++.+|++.|.+++...+||++  ++|+++|+||..|+.+
T Consensus        55 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~~G~v~~~di~~  109 (110)
T cd04605          55 KSVEDIMTRN-------VITATPDEPIDVAARKMERHNISALPVVD--AENRVIGIITSEDISK  109 (110)
T ss_pred             cCHHHhcCCC-------CeEECCCCcHHHHHHHHHHhCCCEEeEEC--CCCcEEEEEEHHHhhh
Confidence            3588888764       78999999999999999999999999998  7899999999999864

Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.46  E-value=5.8e-07  Score=74.32  Aligned_cols=60  Identities=20%  Similarity=0.276  Sum_probs=51.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .++.|+|.++       +.++++++++.+|+++|.+++.+.+||+|++++++++|+||++|+.+.+.
T Consensus       512 ~~v~dim~~~-------~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~  571 (574)
T PRK01862        512 KTAADYAHTP-------FPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR  571 (574)
T ss_pred             chHHHhccCC-------CeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence            4677888765       78999999999999999999999999998321258999999999999875

>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.44  E-value=1.2e-06  Score=56.62  Aligned_cols=47  Identities=34%  Similarity=0.405  Sum_probs=43.4

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+++.+++||++  ++ ++++|++|.+|+++++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~~G~v~~~dl~~~~   50 (114)
T cd04630           3 VVTIDGLATVAEALQLMKEHGVSSLVVEK--RRESDAYGIVTMRDILKKV   50 (114)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCCcEEEEEehHHHHHHH
Confidence            78999999999999999999999999998  66 8999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.43  E-value=1.3e-06  Score=56.09  Aligned_cols=48  Identities=35%  Similarity=0.536  Sum_probs=43.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++.+.|.+++.+.+||++  ++++++|+||..|+++.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~~l~~~~   49 (112)
T cd04624           2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD--PDERPIGIVTERDIVRAV   49 (112)
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCCEEEEEC--CCCCEEEEeeHHHHHHHH
Confidence            378899999999999999999999999998  679999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional

Probab=98.41  E-value=1.1e-06  Score=67.40  Aligned_cols=60  Identities=15%  Similarity=0.299  Sum_probs=52.6

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+|+++|.++.     +++++++++++.+|++.|.+++...+||+|  ++|+++|+||.+|+.+.+
T Consensus       196 ~~~V~~im~~~~-----~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd--~~g~~iG~vt~~dl~~~~  255 (321)
T PRK11543        196 LNKVHHLMRRDD-----AIPQVALTASVMDAMLELSRTGLGLVAVCD--AQQQVQGVFTDGDLRRWL  255 (321)
T ss_pred             HhHHHHHhccCC-----CCcEeCCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEecHHHHHHHH
Confidence            357899999851     278999999999999999999999999998  789999999999988654

>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=1.5e-06  Score=56.05  Aligned_cols=47  Identities=19%  Similarity=0.273  Sum_probs=43.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+++.+.+||+|  ++++++|+|+.+|+.+.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~~~   49 (116)
T cd04643           3 VAYVQDTNTLRHALLVLTKHGYSAIPVLD--KEGKYVGTISLTDILWKL   49 (116)
T ss_pred             cEEECCCCcHHHHHHHHHHCCCceeeeEC--CCCcEEEEEeHHHHHHHh
Confidence            78899999999999999999999999998  789999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.41  E-value=1.5e-06  Score=56.68  Aligned_cols=48  Identities=27%  Similarity=0.536  Sum_probs=44.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      |+.++.+++++.+|++.|.+++..++||+|  ++++++|+||..|+.+..
T Consensus         2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~~~~~~Givt~~dl~~~~   49 (118)
T cd04617           2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD--EDGDLVGVVSRKDLLKAS   49 (118)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence            378999999999999999999999999998  679999999999988764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=98.40  E-value=4.3e-07  Score=73.35  Aligned_cols=59  Identities=20%  Similarity=0.300  Sum_probs=54.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++++|.+.       ++++.++++.+++++.+.+|+.-.+||||  ++++++|+||..|++..+.
T Consensus       195 ~~~i~~im~~~-------~~~V~~~~dqeevA~~~~~ydl~a~PVVd--~~~~LiG~itiDDiidvi~  253 (451)
T COG2239         195 DELLKDLMEDD-------VVSVLADDDQEEVARLFEKYDLLAVPVVD--EDNRLIGIITIDDIIDVIE  253 (451)
T ss_pred             HhHHHHHhccc-------ceeecccCCHHHHHHHHHHhCCeecceEC--CCCceeeeeeHHHHHHHHH
Confidence            56788999986       89999999999999999999999999999  8999999999999988653

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.40  E-value=1.1e-06  Score=68.90  Aligned_cols=59  Identities=24%  Similarity=0.351  Sum_probs=53.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++..+|+++       ++++.+.++++.+.+.|.=.+++-+||++  ++.+++|+||++|++.++.
T Consensus       248 ~t~ieKVMtkn-------p~tv~~~tsVAsvaq~MiwE~iem~PVv~--~n~~llGiitR~dvlk~lq  306 (432)
T COG4109         248 STTIEKVMTKN-------PITVRAKTSVASVAQMMIWEGIEMLPVVD--SNNTLLGIITRQDVLKSLQ  306 (432)
T ss_pred             CccHHHHhccC-------CeeecccchHHHHHHHHHhccceeeeEEc--CCceEEEEEEHHHHHHHHH
Confidence            45677777776       89999999999999999999999999999  8999999999999999864

>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.39  E-value=1.5e-06  Score=55.23  Aligned_cols=47  Identities=28%  Similarity=0.340  Sum_probs=43.1

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++.+++++.++.+|++.|.+++.+.+||++  ++|+++|++|..|+.+.
T Consensus         2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d--~~g~~~Giv~~~dl~~~   48 (106)
T cd04582           2 EPITVRPDDPLSDALGLMDDSDLRALTVVD--ADGQPLGFVTRREAARA   48 (106)
T ss_pred             CCcEecCCCcHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEeHHHHHHh
Confidence            378999999999999999999999999998  78999999999999864

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi

>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.39  E-value=1.9e-06  Score=55.06  Aligned_cols=47  Identities=36%  Similarity=0.545  Sum_probs=43.4

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.+++++.++.++.+.|.+++.+.+||++  ++++++|++|.+|+++.+
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~Giv~~~~l~~~~   49 (113)
T cd04623           3 VITVRPDATVAEAAKLMAEKNIGAVVVVD--DGGRLVGIFSERDIVRKV   49 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeEEEEC--CCCCEEEEEehHHHHHHH
Confidence            78899999999999999999999999998  679999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain

Probab=98.38  E-value=1.7e-06  Score=56.46  Aligned_cols=48  Identities=25%  Similarity=0.437  Sum_probs=43.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++.+.|.+++.+++||++  ++|+++|+|+.+|+...+
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~Giv~~~~l~~~~   50 (124)
T cd04600           3 DVVTVTPDTSLEEAWALLRRHRIKALPVVD--GDRRLVGIVTQRDLLRHA   50 (124)
T ss_pred             CcEEeCCCCCHHHHHHHHHHcCCceeeEEC--CCCCEEEEEEHHHHHhhh
Confidence            488999999999999999999999999998  679999999999997653

These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea

Probab=98.38  E-value=1.9e-06  Score=55.77  Aligned_cols=48  Identities=21%  Similarity=0.293  Sum_probs=43.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++++.|.+.+.+.+||++  ++|+++|+++.+|+.+..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~~   49 (115)
T cd04593           2 PPPVLSATTPLREAAEQLIESKHGSALVVD--RDGGVVGIITLPDLLRAL   49 (115)
T ss_pred             CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence            478899999999999999999999999998  789999999999998754

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d

>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.38  E-value=1.7e-06  Score=55.38  Aligned_cols=48  Identities=13%  Similarity=0.197  Sum_probs=43.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++++.|.++++..+||++  ++++++|+|+..|+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~G~v~~~~l~~~~   49 (114)
T cd04613           2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD--DDGRLVGIVSLDDIREIL   49 (114)
T ss_pred             CceeeCCCCcHHHHHHHHHhCCCcceeEEC--CCCCEEEEEEHHHHHHHH
Confidence            478899999999999999999999999998  678999999999998754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a

>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain

Probab=98.37  E-value=2.5e-06  Score=54.63  Aligned_cols=47  Identities=13%  Similarity=0.290  Sum_probs=43.5

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.+|++.|.+++.+++||++  ++ ++++|++|..|+.+..
T Consensus         3 ~~~i~~~~~i~~a~~~~~~~~~~~~~v~~--~~~~~~~G~v~~~~l~~~~   50 (111)
T cd04590           3 IVALDADDTLEEILELIAESGHSRFPVYD--GDLDNIIGVVHVKDLLRAL   50 (111)
T ss_pred             eEEEcCCCCHHHHHHHHhhCCCceEEEEC--CCCceEEEEEEHHHHHHHH
Confidence            78999999999999999999999999998  66 8999999999998764

CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,

>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.37  E-value=2.2e-06  Score=56.50  Aligned_cols=47  Identities=26%  Similarity=0.427  Sum_probs=43.2

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.+|++.|.+.+.+.+||++  ++++++|++|.+|+.+.+
T Consensus         3 ~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~~~~~G~it~~dl~~~~   49 (128)
T cd04632           3 VITVREDDSVGKAINVLREHGISRLPVVD--DNGKLTGIVTRHDIVDFV   49 (128)
T ss_pred             ceEeCCCCCHHHHHHHHHHcCCCEEEEEC--CCCcEEEEEEHHHHHHHH
Confidence            77899999999999999999999999998  779999999999998653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.36  E-value=1.4e-06  Score=57.50  Aligned_cols=47  Identities=28%  Similarity=0.351  Sum_probs=43.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++++++++.+|++.|.+++++++||+|  ++|+++|++|..|+++..
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~i~V~d--~~~~~~Giv~~~dl~~~~   49 (126)
T cd04642           3 VVSIDSDERVLDAFKLMRKNNISGLPVVD--EKGKLIGNISASDLKGLL   49 (126)
T ss_pred             eEEECCCccHHHHHHHHHHhCCCcccEEC--CCCcEEEEEEHHHhhhhh
Confidence            78899999999999999999999999998  779999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional

Probab=98.35  E-value=2e-06  Score=71.18  Aligned_cols=59  Identities=15%  Similarity=0.220  Sum_probs=53.1

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++|+|+++       ..++++++++.++.+.|.+++.+.+||+|  ++++++|+||.+|+.+.+
T Consensus       445 ~~~~V~dim~~~-------~~~v~~~~tl~ea~~~l~~~~~~~~~VvD--~~g~lvGiVt~~dL~~~l  503 (574)
T PRK01862        445 RTTQMRELIQPA-------QTVVPPTASVADMTRVFLEYPVKYLYVVD--DDGRFRGAVALKDITSDL  503 (574)
T ss_pred             hhCcHHHHhcCC-------CceeCCCCCHHHHHHHHHhCCCceEEEEc--CCCeEEEEEEHHHHHHHh
Confidence            456899999876       78899999999999999999999999999  789999999999998743

>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=2.5e-06  Score=55.39  Aligned_cols=47  Identities=17%  Similarity=0.287  Sum_probs=43.4

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+.+.+
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~g~~~G~vt~~dl~~~~   49 (114)
T cd04619           3 LAKIDVNATLQRAAKILGEPGIDLVVVCD--PHGKLAGVLTKTDVVRQM   49 (114)
T ss_pred             eEEECCCCcHHHHHHHHHhcCCCEEEEEC--CCCCEEEEEehHHHHHHH
Confidence            67899999999999999999999999998  789999999999988754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.35  E-value=1.6e-06  Score=55.72  Aligned_cols=48  Identities=21%  Similarity=0.306  Sum_probs=43.6

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++.+.|.+++.+.+||++  ++++++|+|+..|+.+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~   49 (114)
T cd04629           2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD--DNGNLVGFLSEQDCLKQL   49 (114)
T ss_pred             CCeEeCCCCCHHHHHHHHHhcCCCCccEEC--CCCeEEEEeehHHHHHHh
Confidence            378899999999999999999999999998  789999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.34  E-value=2.7e-06  Score=54.11  Aligned_cols=47  Identities=32%  Similarity=0.415  Sum_probs=43.2

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++.+.|.+++.+.+||++  + ++++|++|..|+.+.+
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~dl~~~~   48 (110)
T cd04609           2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD--D-GRVVGSIDESDLLDAL   48 (110)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCceeeEee--C-CeeEEEEeHHHHHHHH
Confidence            478899999999999999999999999998  5 9999999999998764

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.34  E-value=8.5e-07  Score=72.75  Aligned_cols=58  Identities=17%  Similarity=0.323  Sum_probs=53.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+|.++|+.+       +++++.++-+.||.-.|.++++..+||++   +|+++||||..||++.+.
T Consensus       213 ~~~V~evmT~p-------~~svd~~~~~feAml~m~r~~I~hl~V~e---~gq~~Gilt~~dIl~l~s  270 (610)
T COG2905         213 TQKVSEVMTSP-------VISVDRGDFLFEAMLMMLRNRIKHLPVTE---DGQPLGILTLTDILRLFS  270 (610)
T ss_pred             ccchhhhhccC-------ceeecCcchHHHHHHHHHHhCCceeeeec---CCeeeEEeeHHHHHHhhC
Confidence            56789999985       99999999999999999999999999994   999999999999998753

>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.34  E-value=2.2e-06  Score=56.21  Aligned_cols=47  Identities=15%  Similarity=0.391  Sum_probs=43.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~  118 (121)
                      |+.++.+++++.+|++.|.++++..+||+|  ++ ++++|+||.+|+++.
T Consensus         2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~~Giv~~~dl~~~   49 (123)
T cd04627           2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE--EESGEVIGILSQRRLVEF   49 (123)
T ss_pred             CceecCCCCCHHHHHHHHhhCCcceEEEEe--CCCCcEEEEEEHHHHHHH
Confidence            478899999999999999999999999998  66 899999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.32  E-value=3.8e-06  Score=53.72  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=43.1

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++++++++.++.+.|.+++++++||++  + ++++|+++..|++++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~~l~~~~   48 (110)
T cd04588           2 PLITLNPNATLREAARLFNTHHIHGAPVVD--D-GKLVGIVTLSDIAHAI   48 (110)
T ss_pred             CcEEECCCCCHHHHHHHHHHcCCCEEEEee--C-CEEEEEEEHHHHHHHH
Confidence            478899999999999999999999999998  6 9999999999998764

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=98.32  E-value=1.9e-06  Score=70.26  Aligned_cols=78  Identities=28%  Similarity=0.385  Sum_probs=61.3

Q ss_pred             cceeeeeccccchhhh----hhcC-C----------------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHh
Q 033339           31 RPVVSSRFESVSSARM----EEHG-F----------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ   89 (121)
Q Consensus        31 ~~~~~~~~~~~~~~~~----~~~g-~----------------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~   89 (121)
                      .|.+.+.++++++..|    ...| +                ...++.++|.+       ++.++.+++++.++++.|.+
T Consensus        45 ~Pi~sa~Mdtvt~~~MAiaLAr~GGiGvih~nl~~~~q~~~l~~VKv~~iMi~-------~pvtv~~d~tv~eA~~~m~~  117 (479)
T PRK07807         45 IPLVVANMTAVAGRRMAETVARRGGLVVLPQDIPIDVVAEVVAWVKSRDLVFD-------TPVTLSPDDTVGDALALLPK  117 (479)
T ss_pred             cceeecCCcchhHHHHHHHHHHCCCceEeeCCCCHHHHHHHHhhccccccccc-------CCeEECCCCCHHHHHHHHHh
Confidence            4677888998876544    3344 1                22344455554       48999999999999999999


Q ss_pred             cCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           90 HNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        90 ~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++++.+||+|  ++++++|+||.+|+..
T Consensus       118 ~~~s~l~VVD--~~gklvGIVT~rDL~~  143 (479)
T PRK07807        118 RAHGAVVVVD--EEGRPVGVVTEADCAG  143 (479)
T ss_pred             cCCceEEEEC--CCCeEEEEEeHHHHhc
Confidence            9999999998  7899999999999753

>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.31  E-value=2.8e-06  Score=55.53  Aligned_cols=47  Identities=28%  Similarity=0.334  Sum_probs=43.2

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.+++++|.+++...+||++  ++ |+++|+|+.+|+++.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~~~~G~v~~~dl~~~~   50 (125)
T cd04631           3 VVTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTGKLVGIITATDILKYL   50 (125)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCcccceeEe--CCCCEEEEEEEHHHHHHHh
Confidence            78899999999999999999999999998  66 9999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=98.31  E-value=1.6e-06  Score=70.84  Aligned_cols=59  Identities=15%  Similarity=0.302  Sum_probs=52.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|++..     ++.++.++.++.+|+++|.+++++.+||+|  ++++++|+||.+|+++.
T Consensus       158 ~~~V~diMt~~~-----~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd--~~g~liGIIT~~DIl~~  216 (495)
T PTZ00314        158 STPVSEVMTPRE-----KLVVGNTPISLEEANEVLRESRKGKLPIVN--DNGELVALVSRSDLKKN  216 (495)
T ss_pred             CCCHHHhhCCcC-----CceEeCCCCCHHHHHHHHHHcCCCeEEEEc--CCCcEEEEEEehHhhhc
Confidence            467999998621     288999999999999999999999999999  78999999999999876

>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA

Probab=98.30  E-value=4.3e-06  Score=53.17  Aligned_cols=47  Identities=28%  Similarity=0.393  Sum_probs=43.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++.++++++++.++++.|.+++..++||++  ++++++|+++..|+.+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~   49 (109)
T cd04583           3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVD--KDNKLLGIVSLESLEQA   49 (109)
T ss_pred             CCEEECCCCCHHHHHHHHHHCCCceEEEEc--CCCcEEEEEEHHHHHHH
Confidence            478899999999999999999999999998  67999999999998764

OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz

>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.29  E-value=3e-06  Score=55.14  Aligned_cols=47  Identities=30%  Similarity=0.502  Sum_probs=43.5

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++.+.|.+.+++.+||++  ++|+++|++|.+|+.+..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~   49 (122)
T cd04803           3 VVTLSEDDSLADAEELMREHRIRHLPVVN--EDGKLVGLLTQRDLLRAA   49 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCcccccEEC--CCCCEEEEEEHHHHHHHh
Confidence            78899999999999999999999999998  679999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain

Probab=98.29  E-value=3e-06  Score=56.53  Aligned_cols=47  Identities=19%  Similarity=0.411  Sum_probs=43.5

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++.++.+++++.++++.|.+++...+||++  ++++++|+++.+|+.+.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~~~~~~Gvi~~~dl~~~   49 (135)
T cd04586           3 DVVTVSPETSVAEAARLMLDNHISGLPVVD--DDGRLVGIVSEGDLLRR   49 (135)
T ss_pred             CCEEeCCCCCHHHHHHHHHHcCCCCceEEC--CCCCEEEEeeHHHHHHH
Confidence            488999999999999999999999999998  78999999999999864

BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.27  E-value=3.3e-06  Score=54.72  Aligned_cols=56  Identities=16%  Similarity=0.251  Sum_probs=47.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCC---EEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVG---ALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~---~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.++++.|.+++..   ..||++  ++|+++|+||..|+++
T Consensus        60 ~~~v~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~--~~~~~~Gvvs~~di~~  118 (119)
T cd04598          60 KKPVSEVMDPD-------PLIVEADTPLEEVSRLATGRDSQNLYDGFIVT--EEGRYLGIGTVKDLLR  118 (119)
T ss_pred             CCcHHHhcCCC-------cEEecCCCCHHHHHHHHHcCCcccccccEEEe--eCCeEEEEEEHHHHhc
Confidence            45788999765       88999999999999999988863   446787  6899999999999874

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50

Probab=98.27  E-value=3.7e-06  Score=54.30  Aligned_cols=48  Identities=17%  Similarity=0.143  Sum_probs=42.5

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcC-CCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.+++++.++.+|++.|.+++ .+.+||+|  ++++++|+||.+|+.+..
T Consensus         2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~~   50 (114)
T cd04801           2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVD--NEGRYVGIISLADLRAIP   50 (114)
T ss_pred             CcceeCCCCCHHHHHHHHhccCCceeEEEEc--CCCcEEEEEEHHHHHHHH
Confidence            3788999999999999997775 88999998  789999999999988754

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=3.8e-06  Score=53.55  Aligned_cols=54  Identities=24%  Similarity=0.343  Sum_probs=47.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.++++.|.+.+.+.+||++   +++++|++|..|+++
T Consensus        52 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd---~~~~~G~it~~d~~~  105 (106)
T cd04638          52 EQLALLMTRD-------PPTVSPDDDVKEAAKLMVENNIRRVPVVD---DGKLVGIVTVADIVR  105 (106)
T ss_pred             chHHHHhcCC-------CceECCCCCHHHHHHHHHHcCCCEEEEEE---CCEEEEEEEHHHhhc
Confidence            4577777664       78899999999999999999999999997   479999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.27  E-value=4.5e-06  Score=53.53  Aligned_cols=46  Identities=17%  Similarity=0.349  Sum_probs=42.8

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +.++++++++.++++.|.+++.+.+||++  ++|+++|+++.+|+..+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~   48 (111)
T cd04626           3 FPTIDEDASIREALHEMLKYNTNEIIVKD--NEEKLKGVVTFTDILDL   48 (111)
T ss_pred             ceEECCCccHHHHHHHHHHhCCCeEEEEc--CCCCEEEEEehHHhHHH
Confidence            78899999999999999999999999998  78999999999998865

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.27  E-value=2.6e-06  Score=65.34  Aligned_cols=56  Identities=16%  Similarity=0.270  Sum_probs=49.6

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .+.++|++        ++++.++.++.++++.|.+++.+.+||+|  +.|.++|+||..|++..+.
T Consensus       134 ~l~~l~r~--------~~~V~e~~~l~~~L~~m~~~~~~~a~VvD--e~G~viGiVTleDIle~iv  189 (292)
T PRK15094        134 SMDKVLRQ--------AVVVPESKRVDRMLKEFRSQRYHMAIVID--EFGGVSGLVTIEDILELIV  189 (292)
T ss_pred             CHHHHcCC--------CcCcCCCCcHHHHHHHHHhcCCEEEEEEe--CCCCEEEEeEHHHHHHHHh
Confidence            36667654        56899999999999999999999999999  7899999999999998764

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=3.7e-06  Score=52.89  Aligned_cols=53  Identities=23%  Similarity=0.462  Sum_probs=47.8

Q ss_pred             HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      +.++|...       ..++.+++++.++++.|.+++.+.+||++  ++++++|++|.+|+++
T Consensus        60 ~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~G~i~~~dl~~  112 (113)
T cd02205          60 VGDVMTRD-------VVTVSPDTSLEEAAELMLEHGIRRLPVVD--DEGRLVGIVTRSDILR  112 (113)
T ss_pred             HHHHhcCC-------ceecCCCcCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEEHHHhhc
Confidence            66777765       78899999999999999999999999998  6799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.26  E-value=3.7e-06  Score=56.72  Aligned_cols=47  Identities=23%  Similarity=0.348  Sum_probs=43.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.+|++.|.+++.+.+||+|  ++++++|+||..|+++.+
T Consensus         3 ~~~v~~~~~~~~a~~~~~~~~~~~l~V~d--~~~~~~Giv~~~dl~~~~   49 (135)
T cd04621           3 IATVHPEHSLLHVVDEMEKNGVGRVIVVD--DNGKPVGVITYRDLAFAE   49 (135)
T ss_pred             ceEeCCCCcHHHHHHHHHHcCCCcceEEC--CCCCEEEEEeHHHHHHHh
Confidence            67899999999999999999999999998  789999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.25  E-value=4.4e-06  Score=53.50  Aligned_cols=47  Identities=19%  Similarity=0.294  Sum_probs=43.0

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+.+...+||++  ++|+++|+|+..|+.+.+
T Consensus         3 ~~~v~~~~~i~e~~~~~~~~~~~~~~V~~--~~~~~~G~v~~~~l~~~~   49 (111)
T cd04639           3 FETLSPADTLDDAADALLATTQHEFPVVD--GDGHLVGLLTRDDLIRAL   49 (111)
T ss_pred             ceEcCCCCcHHHHHHHHHHcCCCcceEEC--CCCcEEEEeeHHHHHHHH
Confidence            77899999999999999999999999998  679999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream

Probab=98.24  E-value=3.9e-06  Score=53.34  Aligned_cols=53  Identities=19%  Similarity=0.288  Sum_probs=45.1

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++|...       +.++.+++++.++.++|.+ .. .+||++  ++++++|+||.+|+++
T Consensus        57 ~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~-~~-~~~vv~--~~~~~~Gvvt~~di~~  109 (110)
T cd04609          57 LPVREVMGEP-------LPTVDPDAPIEELSELLDR-GN-VAVVVD--EGGKFVGIITRADLLK  109 (110)
T ss_pred             cCHHHHhcCC-------CceeCCCCcHHHHHHHHHh-CC-ceeEEe--cCCeEEEEEeHHHhhc
Confidence            5688888764       7899999999999999988 33 478888  6799999999999975

The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote

>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism

Probab=98.24  E-value=5.6e-06  Score=53.53  Aligned_cols=46  Identities=22%  Similarity=0.351  Sum_probs=42.4

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +.++.+++++.+|++.|.+.+.+.+||++  ++++++|+||..|+.+.
T Consensus         3 ~~~v~~~~~l~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~dl~~~   48 (111)
T cd04603           3 TVSVNCENPLREAIKMINELGARAVVVVD--EENKVLGQVTLSDLLEI   48 (111)
T ss_pred             eEEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCCEEEEEEHHHHHhh
Confidence            67899999999999999999999999998  78999999999998763

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.24  E-value=5.1e-06  Score=54.86  Aligned_cols=45  Identities=24%  Similarity=0.394  Sum_probs=42.0

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      +.++.+++++.++++.|.+++...+||++  ++|+++|+++..|+.+
T Consensus         3 ~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~~~Giv~~~dl~~   47 (126)
T cd04640           3 PIVIPADTSIDEALELMIKHGVRLLLVVD--SDDNFIGVITAVDLLG   47 (126)
T ss_pred             CeEECCCCcHHHHHHHHHHcCCcEEEEEc--CCCcEEEEEEHHHHhh
Confidence            78899999999999999999999999998  6799999999999875

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain

Probab=98.24  E-value=7.6e-06  Score=52.39  Aligned_cols=47  Identities=28%  Similarity=0.259  Sum_probs=42.9

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.+|.+.|.+++.+++||++  + ++++|+|+..|+.+.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~dl~~~~   49 (110)
T cd04595           3 PVKTVRPEATIEEARELLLRYGHTALPVVE--G-GRVVGIISRRDVEKAL   49 (110)
T ss_pred             CceEeCCCCcHHHHHHHHHHcCCCeeeEee--C-CEEEEEEEHHHHHHHH
Confidence            478999999999999999999999999998  6 9999999999988654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=6.2e-06  Score=52.94  Aligned_cols=46  Identities=26%  Similarity=0.287  Sum_probs=42.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +.++.+++++.++++.|.+.+.+.+||++  ++++++|++|.+|+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~~~~~G~v~~~dl~~~   48 (113)
T cd04615           3 PSCVVLNTDIARAVAEMYTSGSRALPVVD--DKKRLVGIITRYDVLSY   48 (113)
T ss_pred             CEEeeCCCcHHHHHHHHHHcCCceEeEEc--CCCCEEEEEEHHHHHHh
Confidence            67889999999999999999999999998  67899999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC

Probab=98.23  E-value=6.2e-06  Score=52.60  Aligned_cols=47  Identities=21%  Similarity=0.170  Sum_probs=42.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++++.|.+.+...+||++  + ++++|+++..|+.+..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~dl~~~~   48 (111)
T cd04612           2 DVVTVPVDLTVDEVLALMFGERHRGYPVVD--D-GRLVGIVTLADIRRVP   48 (111)
T ss_pred             CCEEeCCCCcHHHHHHHHHHcCCCcceEee--C-CeEEEEEEHHHHHHHH
Confidence            478999999999999999999999999998  5 9999999999998754

SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an

>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.23  E-value=7.7e-06  Score=53.28  Aligned_cols=45  Identities=24%  Similarity=0.447  Sum_probs=41.8

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +.++++++++.++.+.|.+++++.+||++  + |+++|++|..|+.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~   47 (122)
T cd04637           3 VVTVEMDDRLEEVREIFEKHKFHHLLVVE--D-NELVGVISDRDYLKA   47 (122)
T ss_pred             ceEeCCCCCHHHHHHHHHhCCCCEEEEEe--C-CeEEEEEEHHHHHHH
Confidence            78899999999999999999999999998  5 999999999999764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=98.21  E-value=4.2e-06  Score=67.61  Aligned_cols=59  Identities=20%  Similarity=0.355  Sum_probs=52.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|++.      +++++.++.++.++++.|.+++.+.+||+|  ++|+++|+||.+|+++..
T Consensus       142 ~~~V~dvm~~~------~~~~V~~~~sl~eal~~m~~~~~~~lpVVD--e~G~lvGiVT~~DIl~~~  200 (450)
T TIGR01302       142 GKPVSEVMTRE------EVITVPEGIDLEEALKVLHEHRIEKLPVVD--KNGELVGLITMKDIVKRR  200 (450)
T ss_pred             CCCHHHhhCCC------CCEEECCCCcHHHHHHHHHHcCCCeEEEEc--CCCcEEEEEEhHHhhhcc
Confidence            45788999841      289999999999999999999999999999  889999999999998764

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.21  E-value=8.6e-06  Score=52.17  Aligned_cols=46  Identities=24%  Similarity=0.297  Sum_probs=41.8

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++.++.+++++.++.+.|.+++.+.+||++  + ++++|+||.+|++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~dl~~~   47 (113)
T cd04587           2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD--G-NKLVGIFTSKDIALR   47 (113)
T ss_pred             CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE--C-CEEEEEEEhHHHHHH
Confidence            378899999999999999999999999998  5 999999999998753

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.21  E-value=6.8e-06  Score=55.74  Aligned_cols=55  Identities=27%  Similarity=0.462  Sum_probs=48.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++|...       +.++.+++++.++++.|.+.+.+.+||++  + ++++|+||.+|++.
T Consensus        88 ~~~v~~~~~~~-------~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~-~~~~Gvvt~~dl~~  142 (143)
T cd04634          88 KMKVRDIMTKK-------VITISPDASIEDAAELMVRHKIKRLPVVE--D-GRLVGIVTRGDIIE  142 (143)
T ss_pred             cCCHHHHcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEE--C-CEEEEEEEHHHhhc
Confidence            34677888765       89999999999999999999999999998  5 89999999999874

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.21  E-value=4.1e-06  Score=62.55  Aligned_cols=58  Identities=17%  Similarity=0.391  Sum_probs=50.9

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+++++|.++      ++.++.+++++.++++.|.+.+.+++||+|  ++|+++|+|+.+|+.+..
T Consensus       155 ~~v~~im~~~------~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd--~~g~~~Givt~~dl~~~~  212 (268)
T TIGR00393       155 VKVKDLMQTT------DLPLIAPTTSFKDALLEMSEKRLGSAIVCD--ENNQLVGVFTDGDLRRAL  212 (268)
T ss_pred             hhHHHHhCCC------CCCcCCCCCcHHHHHHHHhhcCCcEEEEEe--CCCCEEEEEEcHHHHHHH
Confidence            5788888764      167899999999999999999999999998  789999999999998753

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.20  E-value=4.8e-06  Score=55.37  Aligned_cols=47  Identities=23%  Similarity=0.401  Sum_probs=43.4

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+.+.+++||+|  ++++++|+++..|+++.+
T Consensus         3 ~~~v~~~~~l~~~~~~~~~~~~~~~~V~d--~~~~~~G~i~~~~l~~~~   49 (132)
T cd04636           3 VITVKKDDTLRDVVEILLTGKISGVPVVD--NEGRVVGIVSEGDLIRKI   49 (132)
T ss_pred             CeEeCCCCcHHHHHHHHHHhCCCccceEC--CCCCEEEEEeHHHHHHHH
Confidence            78899999999999999999999999998  789999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=98.19  E-value=3.3e-06  Score=67.46  Aligned_cols=64  Identities=8%  Similarity=0.237  Sum_probs=55.0

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .|...+++|+|++...     +.+++.++++.++++.+.+++++.+||+++ +.++++|+|+.+|++..+
T Consensus       187 ~l~~~~v~diMtpr~~-----v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~-~~d~ivGiv~~kDll~~~  250 (408)
T TIGR03520       187 SFGNTDTKQVMRPRLD-----IFALDIETSFSEIIPKIIENGYSRIPVYKE-TIDNITGVLYIKDLLPHL  250 (408)
T ss_pred             ccCCCEeeeeCCchHh-----EEEEECCCCHHHHHHHHHhCCCCEEEEEcC-CCCceEEEEEHHHHHhHh
Confidence            3467899999998532     899999999999999999999999999972 247899999999998643

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.19  E-value=5.3e-06  Score=53.96  Aligned_cols=46  Identities=35%  Similarity=0.459  Sum_probs=42.8

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +.++.+++++.++++.|.+.+.+++||++  ++|+++|+++..|+++.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~   48 (122)
T cd04635           3 PVTCTPDDPVSKVWDLMLESGFTGLPVVQ--KAGELIGIITRRDIIRA   48 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHHcCCCcccEEC--CCCcEEEEEEcHHHHhh
Confidence            78899999999999999999999999998  78999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.17  E-value=8.7e-06  Score=52.68  Aligned_cols=46  Identities=22%  Similarity=0.234  Sum_probs=41.7

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFK  117 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~  117 (121)
                      ++.++.+++++.++++.|.+.+.+.+||+|  +   +|+++|+++.+|+..
T Consensus         3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~~~~G~v~~~dl~~   51 (114)
T cd04602           3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTE--DGKSGGKLLGIVTSRDIDF   51 (114)
T ss_pred             CCeEcCCCCCHHHHHHHHHHcCCCceEEee--CCCcCCEEEEEEEhHHhhh
Confidence            478999999999999999999999999998  5   689999999999864

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos

>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream

Probab=98.17  E-value=1.1e-05  Score=52.00  Aligned_cols=47  Identities=23%  Similarity=0.427  Sum_probs=42.9

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+.+...+||++  ++|+++|++|.+|+.+.+
T Consensus         4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~dl~~~~   50 (113)
T cd04607           4 QLLVSPDASILDALRKIDKNALRIVLVVD--ENGRLLGTVTDGDIRRAL   50 (113)
T ss_pred             ceEECCCCCHHHHHHHHHhcCcCEEEEEC--CCCCEEEEEEcHHHHHHH
Confidence            67899999999999999999999999998  789999999999987654

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.17  E-value=7.8e-06  Score=55.42  Aligned_cols=46  Identities=26%  Similarity=0.480  Sum_probs=42.8

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++++++++++.++++.|.+.+...+||++  + ++++|++|..|+.+.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~-~~~~G~v~~~dl~~~~   48 (143)
T cd04634           3 PITCNADDTISDAARLLRENKISGAPVLD--G-GKLVGIVSESDILKLL   48 (143)
T ss_pred             cEEecCCCCHHHHHHHHHHcCCCcceEeE--C-CeEEEEecHHHHHHHH
Confidence            78999999999999999999999999998  5 9999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain

Probab=98.17  E-value=1.3e-05  Score=51.31  Aligned_cols=46  Identities=33%  Similarity=0.585  Sum_probs=42.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++.++.+++++.++.+.|.+++.+.+||++  + ++++|+++..|+.+.
T Consensus         2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~-~~~~G~v~~~~l~~~   47 (111)
T cd04800           2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD--D-GRLVGIVTDRDLRNR   47 (111)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCeEEEEE--C-CEEEEEEEhHHHHHH
Confidence            378899999999999999999999999998  5 999999999999864

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa

>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.16  E-value=7.9e-06  Score=52.97  Aligned_cols=47  Identities=30%  Similarity=0.445  Sum_probs=43.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++.++++++++.+|++.|.+.+...+||+|  ++++++|+++..|+.+.
T Consensus         2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~~   48 (121)
T cd04584           2 DVVTITPTTTIAEALELMREHKIRHLPVVD--EEGRLVGIVTDRDLRDA   48 (121)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcccEEC--CCCcEEEEEEHHHHHHH
Confidence            378999999999999999999999999998  67999999999998764

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in

>PRK15094 magnesium/cobalt efflux protein CorC; Provisional

Probab=98.16  E-value=3.8e-06  Score=64.39  Aligned_cols=63  Identities=11%  Similarity=0.294  Sum_probs=54.3

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      .|...+|+++|++..     .+.+++++.++.++.+.+.+++.+.+||++  ++ ++++|+|+.+|++...
T Consensus        63 ~l~~~~V~diMtpr~-----~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~--~~~d~iiGiv~~kDll~~~  126 (292)
T PRK15094         63 DIADQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKDHIEGILMAKDLLPFM  126 (292)
T ss_pred             ccCCCEEeEEccchH-----HEEEEeCCCCHHHHHHHHHhcCCcEEEEec--CCCCcEEEEEEHHHHHhHh
Confidence            345678999999842     289999999999999999999999999997  44 7899999999998643

>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain

Probab=98.16  E-value=1.4e-05  Score=51.18  Aligned_cols=46  Identities=26%  Similarity=0.382  Sum_probs=41.9

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +++++++.++.++++.|.+++.+.+||++  + ++++|+++..|+.+..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~~   48 (111)
T cd04589           3 PLIVDASTSIRDAARLMREHGADALLVRD--G-DPRLGIVTRTDLLDAV   48 (111)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEec--C-CeEEEEEEHHHHHHHH
Confidence            67899999999999999999999999998  5 8999999999988754

Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or

>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream

Probab=98.16  E-value=9.1e-06  Score=52.01  Aligned_cols=46  Identities=28%  Similarity=0.294  Sum_probs=42.5

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++.+++++.++.+.|.+++.+.+||++  ++|+++|+|+.+|++.
T Consensus         3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~   48 (108)
T cd04596           3 DTGYLTTTDTVKDWHELNKETGHSRFPVVD--EKNKVVGIVTSKDVAG   48 (108)
T ss_pred             ccEEeCCCCCHHHHHHHHHHcCCCceeEEC--CCCeEEEEecHHHHhc
Confidence            378999999999999999999999999998  7899999999999875

The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria

Probab=98.15  E-value=1e-05  Score=52.18  Aligned_cols=46  Identities=28%  Similarity=0.413  Sum_probs=42.4

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++++++++.++.+.|.+.+.+.+||++  + |+++|+++..|+.+..
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~i~~~~l~~~~   48 (122)
T cd04585           3 PITVTPDTSLMEALKLMKENSIRRLPVVD--R-GKLVGIVTDRDLKLAS   48 (122)
T ss_pred             CEEeCCCCcHHHHHHHHHhCCcceeeEec--C-CeEEEEEeHHHHHHhh
Confidence            78899999999999999999999999998  5 9999999999998754

Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i

>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream

Probab=98.15  E-value=1.5e-05  Score=50.81  Aligned_cols=46  Identities=30%  Similarity=0.545  Sum_probs=42.2

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.+|++.|.+++.+.+||++  + ++++|+++.+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~-~~~~G~v~~~~l~~~~   48 (111)
T cd04611           3 ILTCPPDTSLAEAASRMRERRISSIVVVD--D-GRPLGIVTERDILRLL   48 (111)
T ss_pred             ceEECCCCcHHHHHHHHHHcCCCEEEEee--C-CEEEEEEeHHHHHHHH
Confidence            77899999999999999999999999998  4 9999999999998764

PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=98.15  E-value=7.9e-06  Score=66.61  Aligned_cols=59  Identities=24%  Similarity=0.380  Sum_probs=52.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|.+.      +++++.+++++.++++.|.+++++.+||+|  ++++++|+||.+|+++.+
T Consensus       146 ~~~V~dim~~~------~~v~v~~~~sl~eal~~m~~~~~~~lpVVD--e~g~lvGiIT~~DLl~~~  204 (486)
T PRK05567        146 SQPVSEVMTKE------RLVTVPEGTTLEEALELLHEHRIEKLPVVD--DNGRLKGLITVKDIEKAE  204 (486)
T ss_pred             CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEEhHHhhhhh
Confidence            35688898732      389999999999999999999999999999  889999999999998764

>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.15  E-value=1.4e-05  Score=50.22  Aligned_cols=47  Identities=34%  Similarity=0.566  Sum_probs=43.2

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.++.++.++.+.|.+++...+||++  ++++++|+++.+|+.+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~G~v~~~~l~~~~   49 (113)
T cd02205           3 VVTVSPDDTVAEALRLMLEHGISGLPVVD--DDGRLVGIVTERDLLRAL   49 (113)
T ss_pred             ceEecCCCCHHHHHHHHHhcCCceEEEEC--CCCCEEEEEeHHHHHHHH
Confidence            77899999999999999999999999998  679999999999998764

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali

>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.13  E-value=1.2e-05  Score=52.09  Aligned_cols=47  Identities=21%  Similarity=0.318  Sum_probs=41.9

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcC-CCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.++.+++++.++++.|...+ .+.+||++  + |+++|+|+..|+.+++
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd--~-~~~~G~v~~~~l~~~~   49 (119)
T cd04598           2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD--D-GRPVGLIMREALMELL   49 (119)
T ss_pred             CcCccCCCCcHHHHHHHHHhCCCccEEEEEE--C-CeeEEEEEHHHHHHHH
Confidence            3678999999999999998887 89999999  7 9999999999988653

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.13  E-value=1.3e-05  Score=52.01  Aligned_cols=46  Identities=30%  Similarity=0.444  Sum_probs=42.1

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+++.+.+||++  + |+++|++|..++.+.+
T Consensus         3 ~~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~-~~~~G~v~~~~l~~~~   48 (121)
T cd04633           3 VITVSPDDRVSHARRLMLDHDISRLPVIE--G-GKLVGIVTEKDIADAL   48 (121)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCeeEEEE--C-CEEEEEEchHHHHHhh
Confidence            78899999999999999999999999998  5 9999999999988653

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.12  E-value=1.7e-05  Score=50.80  Aligned_cols=44  Identities=36%  Similarity=0.597  Sum_probs=40.9

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      +.++.+++++.+|.+.|.+++.+++||++  + |+++|++|..|++.
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~i~~~~l~~   46 (113)
T cd04622           3 VVTVSPDDTIREAARLMREHDVGALPVCE--N-DRLVGIVTDRDIVV   46 (113)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEee--C-CEEEEEEEhHHHHH
Confidence            78899999999999999999999999998  5 99999999999863

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>TIGR00393 kpsF KpsF/GutQ family protein

Probab=98.11  E-value=8.1e-06  Score=60.96  Aligned_cols=50  Identities=18%  Similarity=0.341  Sum_probs=45.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEe
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIIT  111 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt  111 (121)
                      ..++.++|.+.       +.++.+++++.+|+++|.+++...+||++  ++|+++|+|+
T Consensus       219 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~l~GvI~  268 (268)
T TIGR00393       219 KSEVRDFMTLG-------PKTFKLDALLLEALEFLERRKITSLVVVD--DHNKVLGVLH  268 (268)
T ss_pred             cCcHHHhCCCC-------CeEECCCCcHHHHHHHHHHcCCcEEEEEC--CCCeEEEEEC
Confidence            46789999775       78999999999999999999999999998  7889999985

This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.

>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]

Probab=98.09  E-value=5.2e-06  Score=68.26  Aligned_cols=58  Identities=19%  Similarity=0.351  Sum_probs=51.3

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +++.+++..+       +++|++..++.+|+++|.+.+++++.+++  +++..+||||++|++..+.
T Consensus       149 trv~~~~~~~-------~~~v~~~~~i~~aa~km~~~gv~s~v~l~--~~~~~~GIvT~~dl~~~v~  206 (610)
T COG2905         149 TRVGEVKTLP-------AVTVSPQASIQDAARKMKDEGVSSLVVLD--DSGPLLGIVTRKDLRSRVI  206 (610)
T ss_pred             HHHHHHhcCC-------CcccCccCcHHHHHHHHHhcCCCeEEEEc--CCCCccceeehHHHHHHHH
Confidence            4566666664       89999999999999999999999999998  7999999999999998754

>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]

Probab=98.09  E-value=1.2e-05  Score=56.87  Aligned_cols=57  Identities=25%  Similarity=0.390  Sum_probs=47.9

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...+++++|...       +++++++.++..+-+++..+.  ++.|+   ++|+++||||..|+++.+.
T Consensus       128 ~~~~vr~vM~e~-------fP~Vs~~~~l~vI~~LL~~~~--AVlV~---e~G~~vGIITk~DI~k~~~  184 (187)
T COG3620         128 RSLRVREVMGEP-------FPTVSPDESLNVISQLLEEHP--AVLVV---ENGKVVGIITKADIMKLLA  184 (187)
T ss_pred             hhhhHHHHhcCC-------CCcCCCCCCHHHHHHHHhhCC--eEEEE---eCCceEEEEeHHHHHHHHh
Confidence            356889999875       999999999998888887765  47777   4999999999999998754

>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain

Probab=98.07  E-value=1.9e-05  Score=49.93  Aligned_cols=46  Identities=33%  Similarity=0.432  Sum_probs=41.3

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++.++.+++++.++++.|.+++...+||++   +++++|+++.+|+.+.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~~~~~Giv~~~~l~~~   47 (105)
T cd04599           2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---DGKLVGIITSRDVRRA   47 (105)
T ss_pred             CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---CCEEEEEEehHHhhcc
Confidence            378899999999999999999999999997   5899999999998753

The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=98.07  E-value=1.2e-05  Score=65.42  Aligned_cols=77  Identities=25%  Similarity=0.391  Sum_probs=59.9

Q ss_pred             ccceeeeeccccchhhhhh----c-CC----------------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHH
Q 033339           30 LRPVVSSRFESVSSARMEE----H-GF----------------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT   88 (121)
Q Consensus        30 ~~~~~~~~~~~~~~~~~~~----~-g~----------------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~   88 (121)
                      ..|.+++.++++++..|..    . |.                ...++.++|.+       +++++.+++++.++++.|.
T Consensus        43 ~~P~vsa~mdtvTe~~MAi~~A~~GGigvIh~n~~i~~qae~v~~VKv~eim~~-------~pvtv~p~~tI~eA~~lm~  115 (475)
T TIGR01303        43 TIPLVVANMTAVAGRRMAETVARRGGIVILPQDLPIPAVKQTVAFVKSRDLVLD-------TPITLAPHDTVSDAMALIH  115 (475)
T ss_pred             ccceeeccchhhHHHHHHHHHHHCCCEEEEeCCCCHHHHHHHHhhcchhhcccc-------CCeEECCCCCHHHHHHHHH
Confidence            3577889999988775533    2 22                12344455554       4899999999999999999


Q ss_pred             hcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339           89 QHNVGALVVVKPGEQKSVAGIITERGIF  116 (121)
Q Consensus        89 ~~~~~~lpVvd~~~~~~lvGiVt~~Di~  116 (121)
                      +++++.+||++   +++++|+||.+|+.
T Consensus       116 ~~~~~~~vVvD---~gklvGIVT~rDL~  140 (475)
T TIGR01303       116 KRAHGAAVVIL---EDRPVGLVTDSDLL  140 (475)
T ss_pred             hcCCeEEEEEE---CCEEEEEEEHHHhh
Confidence            99999999997   57999999999975

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG0517 FOG: CBS domain [General function prediction only]

Probab=98.07  E-value=2.7e-05  Score=50.03  Aligned_cols=47  Identities=36%  Similarity=0.484  Sum_probs=43.8

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +.++.++.++.+|...|.++++..+||++   .++++|++|.+|+.+++.
T Consensus         9 ~~~v~~~~~~~~a~~~m~~~~~~~~~v~~---~~~l~Giit~~di~~~~~   55 (117)
T COG0517           9 VITVKPDTSVRDALLLMSENGVSAVPVVD---DGKLVGIITERDILRALA   55 (117)
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEee---CCEEEEEEEHHHHHHHHh
Confidence            89999999999999999999999999996   558999999999998864

>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=98.06  E-value=2.8e-05  Score=49.76  Aligned_cols=46  Identities=41%  Similarity=0.639  Sum_probs=41.7

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+++.+.+||++  + ++++|+++..|+++.+
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~-~~~~G~v~~~dl~~~~   48 (112)
T cd04802           3 VITVDPDTTVYEAANIMTENNIGRLIVVD--N-EKPVGIITERDLVKKV   48 (112)
T ss_pred             cEEECCCCCHHHHHHHHHHCCCCEEEEEE--C-CEEEEEEEHHHHHHHH
Confidence            78899999999999999999999999998  4 4999999999998754

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein

Probab=98.06  E-value=1.5e-05  Score=50.72  Aligned_cols=46  Identities=26%  Similarity=0.375  Sum_probs=41.9

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++.+++++.++++.|.+++.+.+||++  ++|+++|++|.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~~~~~G~v~~~~l~~   48 (110)
T cd04601           3 DPITVSPDATVAEALELMAEYGISGLPVVD--DDGKLVGIVTNRDLRF   48 (110)
T ss_pred             CCeEeCCCCcHHHHHHHHHHcCCceEEEEc--CCCEEEEEEEhhHeee
Confidence            478999999999999999999999999998  6799999999999753

IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.

>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]

Probab=98.05  E-value=1e-05  Score=63.53  Aligned_cols=81  Identities=22%  Similarity=0.364  Sum_probs=65.0

Q ss_pred             cceeeeeccccchhhhhhcCC-------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC
Q 033339           31 RPVVSSRFESVSSARMEEHGF-------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ  103 (121)
Q Consensus        31 ~~~~~~~~~~~~~~~~~~~g~-------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~  103 (121)
                      .|.+.+.+++.+-+.|..+-+       +-..|+|+|.+-..     ..++.+++++++..++..+.+.+.+||+|  ..
T Consensus       158 lPvlstsYDTFTVAtmIN~Al~n~lIKkdI~~Vedi~~P~~~-----~~yL~~~d~v~d~~~l~~kt~~sRfPVvn--~~  230 (432)
T COG4109         158 LPVLSTSYDTFTVATMINKALSNQLIKKDIITVEDIMTPLED-----TSYLRETDTVEDWLDLVEKTGHSRFPVVN--RS  230 (432)
T ss_pred             CceEEecccceeHHHHHHHHHHHhhhhhheeeHHHhcccccc-----ceeccccccHHHHHHHHHHcCCCccceec--cc
Confidence            466778888866544433222       34689999997543     78999999999999999999999999999  88


Q ss_pred             CeeEEEEeHHHHHHH
Q 033339          104 KSVAGIITERGIFKA  118 (121)
Q Consensus       104 ~~lvGiVt~~Di~~~  118 (121)
                      .+++|+||.+|+...
T Consensus       231 ~kvvGvVt~rDv~~~  245 (432)
T COG4109         231 MKVVGVVTMRDVLDK  245 (432)
T ss_pred             ceEEEEEEehhhhcC
Confidence            999999999998754

>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein

Probab=98.04  E-value=1.7e-05  Score=50.72  Aligned_cols=47  Identities=26%  Similarity=0.406  Sum_probs=42.7

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++.+.|.+.+.+.+||++  ++|+++|+++..++.+.+
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~~~~~G~v~~~~i~~~~   50 (114)
T cd04604           4 LPLVSPDTSLKDALLEMSRKGLGMTAVVD--EDGRLVGIFTDGDLRRAL   50 (114)
T ss_pred             ccccCCCCcHHHHHHHHHhcCccEEEEEc--CCCCEEEEechHHHHHHH
Confidence            67889999999999999988999999998  679999999999988764

These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct

>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea

Probab=98.02  E-value=3e-05  Score=49.37  Aligned_cols=45  Identities=24%  Similarity=0.268  Sum_probs=40.9

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      -.++.+++++.++++.|.+.+.+.+||++  + ++++|+++.+|+.++
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~~~G~v~~~~l~~~   47 (104)
T cd04594           3 DIKVKDYDKVYEAKRIMIENDLLSLPVVD--Y-NKFLGAVYLKDIENA   47 (104)
T ss_pred             ceEECCCCCHHHHHHHHHHcCCcEEEEEE--C-CEEEEEEEHHHHhhh
Confidence            36789999999999999999999999998  6 999999999998753

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do

>TIGR03520 GldE gliding motility-associated protein GldE

Probab=97.99  E-value=2.2e-05  Score=62.71  Aligned_cols=48  Identities=15%  Similarity=0.268  Sum_probs=45.3

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ++.+++++.++.++++.|.+++.+..+|+|  +.|.++|+||..|+++.+
T Consensus       263 ~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvD--E~G~~~GiVT~eDileei  310 (408)
T TIGR03520       263 EPYFVPENKKLDDLLRDFQEKKNHLAIVVD--EYGGTSGLVTLEDIIEEI  310 (408)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCceEEEEEc--CCCCEEEEEEHHHHHHHH
Confidence            478999999999999999999999999999  789999999999999876

Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.

>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.97  E-value=4e-05  Score=49.36  Aligned_cols=46  Identities=35%  Similarity=0.449  Sum_probs=40.0

Q ss_pred             eEEEcCCCcHHHHHHHHHhcC-CCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHN-VGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~-~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.+++++.++.++++.|..++ ...+||++   +|+++|+++..|+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~   49 (115)
T cd04620           3 PLTVTPDTPVADAIALMSQQGDSSCVLVVE---KGRLLGIFTERDIVRLT   49 (115)
T ss_pred             CeEeCCCCcHHHHHHHHHhcCCCceEEEcC---CCcEEEEEeHHHHHHHH
Confidence            678999999999999998888 67778775   58999999999998753

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=97.97  E-value=2e-05  Score=64.23  Aligned_cols=47  Identities=28%  Similarity=0.335  Sum_probs=43.6

Q ss_pred             CceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        69 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .++.++.+++++.++++.|.+++++.+||++  ++++++|+||.+|+..
T Consensus        95 ~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd--~~g~lvGiVt~~DL~~  141 (486)
T PRK05567         95 TDPVTVTPDTTLAEALALMARYGISGVPVVD--ENGKLVGIITNRDVRF  141 (486)
T ss_pred             CCCeEeCCCCCHHHHHHHHHHhCCCEEEEEc--cCCEEEEEEEHHHhhh
Confidence            3489999999999999999999999999999  7899999999999863

>PLN02274 inosine-5'-monophosphate dehydrogenase

Probab=97.97  E-value=2.4e-05  Score=64.21  Aligned_cols=49  Identities=10%  Similarity=0.036  Sum_probs=44.5

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFK  117 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~  117 (121)
                      |+++++++++++++.+|++.|.+++++.+||+|  +   +++++|+||.+|+..
T Consensus       106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD--~~~~~GklvGIVT~~DL~~  157 (505)
T PLN02274        106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTE--TGTMGSKLLGYVTKRDWDF  157 (505)
T ss_pred             ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEe--CCCcCCeEEEEEEHHHHhh
Confidence            667799999999999999999999999999998  4   489999999999854

>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.96  E-value=5.5e-05  Score=48.38  Aligned_cols=46  Identities=24%  Similarity=0.470  Sum_probs=40.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++.+++++.++++.|.+++...++|.+   +|+++|++|.+|+.+.+
T Consensus         3 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~G~v~~~dl~~~~   48 (112)
T cd04625           3 IYTVAPETLLSEAVATMAEQDLGSLVVME---RGELVGLLTFREVLQAM   48 (112)
T ss_pred             cEEECCCCcHHHHHHHHHHcCCCeEEEee---CCEEEEEEEHHHHHHHH
Confidence            67899999999999999988888888775   59999999999998654

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>PRK11573 hypothetical protein; Provisional

Probab=97.91  E-value=5.1e-05  Score=60.81  Aligned_cols=63  Identities=14%  Similarity=0.307  Sum_probs=55.6

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .|...+++++|++...     +.+++.++++.++++.+.+++.+.+||.++ +.+.++|+|..+|++..
T Consensus       183 ~l~~~~v~eiMtPr~~-----i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~-~~D~IiGiv~~kDll~~  245 (413)
T PRK11573        183 DLEKVTVDDIMVPRNE-----IVGIDINDDWKSILRQLTHSPHGRIVLYRD-SLDDAISMLRVREAYRL  245 (413)
T ss_pred             ccCCCChhhcCCccce-----EEEEECCCCHHHHHHHHHhCCCceEEEEcC-CCCceEEEEEHHHHHHH
Confidence            3467899999999754     899999999999999999999999999973 35889999999999864

>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria

Probab=97.91  E-value=4.1e-05  Score=49.25  Aligned_cols=47  Identities=17%  Similarity=0.141  Sum_probs=42.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~~~  119 (121)
                      ...+.+++++.++.+.+.+++...+||++  +   +|+++|+|+.+|+.+..
T Consensus         4 ~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~~~~G~v~~~dl~~~~   53 (105)
T cd04591           4 VVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESPRLVGYILRSQLVVAL   53 (105)
T ss_pred             eEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCCEEEEEEeHHHHHHHH
Confidence            67889999999999999999999999998  5   68999999999998764

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=97.91  E-value=4e-05  Score=60.51  Aligned_cols=56  Identities=18%  Similarity=0.310  Sum_probs=49.0

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .+.+.+...       ..++.+++++.+++..|.+++.. +||+|  ++|+++|+||..++++++.
T Consensus       303 ~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~~g~i~~~~~~~~~~  358 (363)
T TIGR01186       303 GLQDVLIDD-------IYTVDAGTLLRETVRKVLKAGIK-VPVVD--EDQRLVGIVTRGSLVDALY  358 (363)
T ss_pred             chhhhhccC-------CceECCCCcHHHHHHHHHhCCCC-EEEEC--CCCcEEEEEEHHHHHHHHH
Confidence            355556543       78999999999999999999999 99998  8999999999999998874

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=97.90  E-value=2.6e-05  Score=63.08  Aligned_cols=49  Identities=24%  Similarity=0.308  Sum_probs=44.1

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC---CeeEEEEeHHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERGIFK  117 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~---~~lvGiVt~~Di~~  117 (121)
                      |.+++.++++++++.++++.|.+++++.+||++  ++   ++++|+||.+|+..
T Consensus        86 ~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd--~~~~~~~lvGIVt~rDL~~  137 (450)
T TIGR01302        86 IISDPVTISPETTVADVLELMERKGISGIPVVE--DGDMTGKLVGIITKRDIRF  137 (450)
T ss_pred             eecCceEeCCCCCHHHHHHHHHHcCCCEEEEEe--CCCCCCeEEEEEEHHHHhh
Confidence            444589999999999999999999999999998  55   79999999999874

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=97.87  E-value=3.5e-05  Score=63.22  Aligned_cols=57  Identities=18%  Similarity=0.141  Sum_probs=46.5

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFK  117 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~  117 (121)
                      .|.++|...    ....+++++++++.+|++.|.+++++.+||+|  +   +++++|+||.+|+..
T Consensus        95 kVk~~~~g~----i~~~~tV~pd~tl~eAl~~m~~~~~~~vpVVD--~~~~~gkLvGIVT~~DLr~  154 (502)
T PRK07107         95 RVKNYKAGF----VVSDSNLTPDNTLADVLDLKEKTGHSTVAVTE--DGTAHGKLLGIVTSRDYRI  154 (502)
T ss_pred             HHHHHhcCC----cCCCCEeCCCCcHHHHHHHHHhcCCCeEEEEe--CCCcCCEEEEEEEcHHhhc
Confidence            356666532    11257999999999999999999999999998  4   589999999999863

>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE

Probab=97.83  E-value=3.8e-05  Score=49.17  Aligned_cols=42  Identities=21%  Similarity=0.333  Sum_probs=36.6

Q ss_pred             EcCCCcHHHHHHHHHhcC-----CCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           74 CTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        74 v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      +.+++++.++++.|.+++     ...+||++  ++++++|+|+.+|+.+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~~~~~G~v~~~~l~~   48 (109)
T cd04606           2 VREDWTVGEALEYLRRNADDPETIYYIYVVD--EEGRLLGVVSLRDLLL   48 (109)
T ss_pred             ccccCcHHHHHHHHHhccCcccceeEEEEEC--CCCCEEEEEEHHHHhc
Confidence            568899999999998877     47899998  6799999999999864

MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins

Probab=97.82  E-value=0.00011  Score=46.64  Aligned_cols=45  Identities=24%  Similarity=0.409  Sum_probs=41.1

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..++.++.++.+++..|.+.+.+.+||++  ++++++|+++.+++..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~g~v~~~~l~~   47 (106)
T cd04638           3 VVYVTLPGTRDDVLELLKEYKVSGVPVVK--KSGELVGIITRKDLLR   47 (106)
T ss_pred             cEEECCCCCHHHHHHHHHHcCCCeEEEEc--CCCcEEEEEEHHHHHh
Confidence            67889999999999999999999999998  6799999999999864

CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener

>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream

Probab=97.82  E-value=0.0001  Score=46.67  Aligned_cols=45  Identities=24%  Similarity=0.417  Sum_probs=40.6

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++.++.++.++.++++.|.+.+.+.+||++  + ++++|+++..|++.
T Consensus         3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~-~~~~g~v~~~~l~~   47 (107)
T cd04610           3 DVITVSPDNTVKDVIKLIKETGHDGFPVVD--N-GKVVGIVSARDLLG   47 (107)
T ss_pred             CcEEECCCCcHHHHHHHHHHcCCCeeeEeE--C-CEEEEEEEHHHhhc
Confidence            378899999999999999988888999998  5 99999999999864

CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=97.81  E-value=6e-05  Score=61.76  Aligned_cols=50  Identities=18%  Similarity=0.207  Sum_probs=43.4

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC-CCeeEEEEeHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE-QKSVAGIITERGIF  116 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~-~~~lvGiVt~~Di~  116 (121)
                      |+.+++++++++++.+|+++|.+++++.+||++++. +++++|+||.+|+.
T Consensus       102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~  152 (495)
T PTZ00314        102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDID  152 (495)
T ss_pred             cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHh
Confidence            556689999999999999999999999999998210 38999999999985

>TIGR00400 mgtE Mg2+ transporter (mgtE)

Probab=97.76  E-value=9.7e-05  Score=59.68  Aligned_cols=59  Identities=19%  Similarity=0.344  Sum_probs=50.7

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHh-----cCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQ-----HNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~-----~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      .|...+++++|++.       +.+++++.++.+|++.|.+     ++...++|+|  ++++++|+|+.+|++.
T Consensus       127 ~~~e~tvg~iMt~~-------~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd--~~~~l~GvV~l~dLl~  190 (449)
T TIGR00400       127 SYSDDSAGRIMTIE-------YVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTN--ESKHLKGVLSIRDLIL  190 (449)
T ss_pred             CCCcchHHHhCcCc-------eEEECCCCcHHHHHHHHHhcCCCccceeEEEEEC--CCCeEEEEEEHHHHhc
Confidence            34567899999865       8999999999999999975     5667899998  7899999999999864

This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.71  E-value=0.0001  Score=59.29  Aligned_cols=64  Identities=16%  Similarity=0.337  Sum_probs=57.0

Q ss_pred             CCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +...+++++|++...     +.+++.+.++.++.+.+.+.+++.+||++ +..+.++|++..+|++....
T Consensus       203 l~~~~v~eiMtPR~~-----i~~l~~~~~~~~~~~~~~~~~~SR~PV~~-~~~D~iiGiv~~Kdll~~~~  266 (429)
T COG1253         203 LDDRTVREIMTPRTD-----IVALDLTDTVEELIELILESGHSRIPVYD-GDLDNIIGIVHVKDLLRALL  266 (429)
T ss_pred             cCCcEeeeEeeeccc-----EEEEcCCCCHHHHHHHHHhCCCCeeeEEc-CCCCcEEEEEEHHHHHHHHh
Confidence            367899999999753     89999999999999999999999999998 35689999999999998754

>TIGR01137 cysta_beta cystathionine beta-synthase

Probab=97.71  E-value=0.00012  Score=58.80  Aligned_cols=54  Identities=15%  Similarity=0.311  Sum_probs=44.3

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .++.++|.+.       +.++++++++.+++++|.+++   .|+|+  ++++++|+||.+|+++++
T Consensus       400 ~~v~~im~~~-------~~~v~~~~~l~~a~~~~~~~~---~~vV~--~~g~liGvvt~~dll~~l  453 (454)
T TIGR01137       400 DAVSKVMSKK-------FIQIGEGEKLSDLSKFLEKNS---SAIVT--EEGKPIGVVTKIDLLSFL  453 (454)
T ss_pred             CCHHHhcCCC-------CeEECCcCcHHHHHHHHHHCC---eeEEE--ECCEEEEEEEHHHHHHhh
Confidence            4677888654       789999999999999998864   34555  478999999999999875

Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=97.58  E-value=0.00027  Score=56.53  Aligned_cols=47  Identities=19%  Similarity=0.258  Sum_probs=43.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.+++++.+++..+.+.... +||+|  ++|+++|+||..++++++.
T Consensus       347 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~--~~~~~~g~~~~~~~~~~~~  393 (400)
T PRK10070        347 PLAVDAQTPLSELLSHVGQAPCA-VPVVD--EDQQYVGIISKGMLLRALD  393 (400)
T ss_pred             CceeCCCCCHHHHHHHHHhCCCc-EEEEC--CCCcEEEEEEHHHHHHHHH
Confidence            78999999999999999998877 99998  8999999999999999874

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=97.49  E-value=0.00033  Score=55.73  Aligned_cols=48  Identities=23%  Similarity=0.364  Sum_probs=45.5

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +++|.+++++.+++..|..++++.+.|||  ++|.++|+||.+|++.++.
T Consensus       312 vvtc~~~ssL~~vi~~lv~~~vHRl~VVd--~~~~l~GvvSLsDil~~l~  359 (381)
T KOG1764|consen  312 VVTCRPTSTLAEVIDKLVAHRVHRLWVVD--EDGVLVGVISLSDILSYLV  359 (381)
T ss_pred             cEEEeecchHHHHHHHHHhcCceEEEEEc--CCCcEEEEeeHHHHHHHHH
Confidence            79999999999999999999999999999  7899999999999998763

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=97.43  E-value=0.00017  Score=57.70  Aligned_cols=57  Identities=18%  Similarity=0.270  Sum_probs=52.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ...+.++|++.       .++...+.++.++-+++.+.+.+.|||+|  ++|+++.+++++|+.+.
T Consensus       170 ~~~~~~vmt~~-------~~~~~~gi~l~~~neiL~~~kkGkl~iv~--~~gelva~~~rtDl~k~  226 (503)
T KOG2550|consen  170 SLLVSDVMTKN-------PVTGAQGITLKEANEILKKIKKGKLPVVD--DKGELVAMLSRTDLMKN  226 (503)
T ss_pred             cchhhhhcccc-------cccccccccHHHHHHHHHhhhcCCcceec--cCCceeeeeehhhhhhh
Confidence            57889999987       68999999999999999999999999999  89999999999999764

>PRK11573 hypothetical protein; Provisional

Probab=97.27  E-value=0.00094  Score=53.58  Aligned_cols=49  Identities=12%  Similarity=0.213  Sum_probs=45.5

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      |+.+++++.++.++++.|.+++.+-..|+|  +.|...|+||..|++..+.
T Consensus       263 ~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD--EyG~~~GiVTleDilEeiv  311 (413)
T PRK11573        263 EIYFVPEGTPLSTQLVKFQRNKKKVGLVVD--EYGDIQGLVTVEDILEEIV  311 (413)
T ss_pred             CCeEeCCCCcHHHHHHHHHhcCCeEEEEEe--cCCCeEEEeeHHHHHHHHh
Confidence            588999999999999999999999999999  8899999999999998653

>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]

Probab=97.06  E-value=0.002  Score=51.82  Aligned_cols=49  Identities=18%  Similarity=0.263  Sum_probs=45.9

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +++.+++..++.++++.|.+.+.+-..|+|  +.|...|+||..|++..+.
T Consensus       280 ~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD--EyG~~~GlVTleDIiEeIv  328 (429)
T COG1253         280 PPLFVPETLSLSDLLEEFREERTHMAIVVD--EYGGVEGLVTLEDIIEEIV  328 (429)
T ss_pred             CCeEecCCCcHHHHHHHHHHhCCeEEEEEE--cCCCeEEEeEHHHHHHHHh
Confidence            689999999999999999999999999999  8899999999999998753

>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes

Probab=96.97  E-value=0.0011  Score=44.86  Aligned_cols=31  Identities=35%  Similarity=0.371  Sum_probs=29.2

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeC
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKP  100 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~  100 (121)
                      +++++.+++++.+|++.|.+++++.+||+++
T Consensus        87 ~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~  117 (133)
T cd04592          87 GLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR  117 (133)
T ss_pred             CCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence            3889999999999999999999999999974

These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually

>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]

Probab=96.96  E-value=0.0015  Score=51.94  Aligned_cols=47  Identities=23%  Similarity=0.294  Sum_probs=43.8

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +..+..++++.+|+++|.+++++.+||++  ..|+.+|.++..|+....
T Consensus       239 i~~i~~~~~v~~al~~m~~~~is~lpvV~--~~g~~v~~~s~~Dv~~l~  285 (381)
T KOG1764|consen  239 IASISEDTPVIEALKIMSERRISALPVVD--ENGKKVGNYSRFDVIHLA  285 (381)
T ss_pred             heeecCCCcHHHHHHHHHhcCcCcceEEc--CCCceecceehhhhhhhh
Confidence            78899999999999999999999999999  888889999999987654

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.65  E-value=0.0082  Score=47.78  Aligned_cols=47  Identities=15%  Similarity=0.261  Sum_probs=44.2

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.+++.++++.+-+..|.+++-+.-.|||  +-|.+.|+||..|++.-+
T Consensus       277 pyFVPe~Tpl~~QL~~F~~~k~hialVVD--EYG~i~GLVTLEDIlEEI  323 (423)
T COG4536         277 PYFVPEGTPLSDQLVAFQRNKKHIALVVD--EYGDIQGLVTLEDILEEI  323 (423)
T ss_pred             CeecCCCCcHHHHHHHHHHhcceEEEEEe--ccCcEEeeeeHHHHHHHH
Confidence            78999999999999999999999999999  899999999999998754

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=96.52  E-value=0.0014  Score=49.32  Aligned_cols=63  Identities=11%  Similarity=0.285  Sum_probs=55.4

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...+|+|+|-+...     .+++..++++.+.+..+.+...+.+||+.+ +...+.||+-.+|+++.+.
T Consensus        65 adl~vrDiMIPRSQ-----M~~l~~~~~l~~~l~~iiesaHSRfPVi~e-dkD~v~GIL~AKDLL~~~~  127 (293)
T COG4535          65 ADLRVRDIMIPRSQ-----MITLKRNQTLDECLDVIIESAHSRFPVISE-DKDHVEGILLAKDLLPFMR  127 (293)
T ss_pred             HHhhHhhhcccHHH-----heeccccCCHHHHHHHHHHhccccCCcccC-CchhhhhhhhHHHHHHHhc
Confidence            46789999998743     899999999999999999999999999974 3578999999999998754

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=96.34  E-value=0.0049  Score=51.84  Aligned_cols=45  Identities=20%  Similarity=0.228  Sum_probs=42.6

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++++.+++++..+..++++-+++.+.|++  +.++++|++|++|+.+
T Consensus       700 PytV~~~mSl~k~~~lFR~lGLRhLlVv~--~~~~~~gilTR~D~~~  744 (762)
T KOG0474|consen  700 PYTVPETMSLAKAFILFRQLGLRHLLVVP--KTNRVVGILTRKDLAR  744 (762)
T ss_pred             CcccCcccchHHHHHHHHHhcceeEEEec--CCCceeEEEehhhhhh
Confidence            78999999999999999999999999998  7888999999999875

>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein

Probab=96.33  E-value=0.012  Score=46.96  Aligned_cols=46  Identities=15%  Similarity=0.260  Sum_probs=40.9

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++++++++.+++..+.+.... +||++   +|+++|+|+..+++.++.
T Consensus       335 ~~~~~~~~~~~~~~~~~~~~~~~-~~v~~---~~~~~g~~~~~~~~~~~~  380 (382)
T TIGR03415       335 PTVINPDTLMRDVLAARHRTGGA-ILLVE---NGRIVGVIGDDNIYHALL  380 (382)
T ss_pred             CcccCCCCcHHHHHHHHhcCCCC-eEEee---CCeEEEEEeHHHHHHHHh
Confidence            67899999999999999888765 88887   499999999999998864

Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.

>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]

Probab=96.26  E-value=0.012  Score=47.88  Aligned_cols=57  Identities=21%  Similarity=0.357  Sum_probs=47.2

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc-----CCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ...++.-+|+..       ++++.++.|+.+++..+++.     .+..+-|+|  ++++++|++|.++++.
T Consensus       130 ~e~taG~~Mt~e-------~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD--~~~~L~Gvvsl~~Ll~  191 (451)
T COG2239         130 PEDTAGRIMTTE-------FVTLPEDVTVDEALDRIRERAEDAETIYYLYVVD--EKGKLLGVVSLRDLLT  191 (451)
T ss_pred             Chhhhhccceee-------eEEeccCcCHHHHHHHHHHhcccccccceEEEEC--CccceEEEeeHHHHhc
Confidence            344566666665       99999999999999999844     567899999  8899999999999874

>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]

Probab=96.08  E-value=0.0055  Score=48.77  Aligned_cols=67  Identities=15%  Similarity=0.308  Sum_probs=57.3

Q ss_pred             cCCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhhC
Q 033339           49 HGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN  121 (121)
Q Consensus        49 ~g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~~  121 (121)
                      .+++..+|.|+|.+...     ...+..+++.+++++.+...-...+|+..+ +-+.++|++..+|+++++.+
T Consensus       195 LDLe~~tV~DIMvpR~~-----i~~id~d~~~e~iv~ql~~s~HtRiplyr~-~~DnIiGvlh~r~llr~l~e  261 (423)
T COG4536         195 LDLENLTVSDIMVPRNE-----IIGIDIDDPWEEIVRQLLHSPHTRIPLYRD-DLDNIIGVLHVRDLLRLLNE  261 (423)
T ss_pred             cccccceeeeeeccccc-----eeeecCCCCHHHHHHHHhhCCCCceeeecC-ChhHhhhhhhHHHHHHHhhc
Confidence            34477899999998743     889999999999999999999999999964 23569999999999998753

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=95.20  E-value=0.052  Score=45.78  Aligned_cols=55  Identities=18%  Similarity=0.253  Sum_probs=47.5

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++|.-.       +.++....+.+.+++++++-++..+.|.   ++|+++|+||.+|+++..
T Consensus       640 ~lk~il~~t-------p~tv~d~tp~~~v~~~F~~lg~~~~~v~---~~G~l~Giitkkd~l~~~  694 (696)
T KOG0475|consen  640 DLKDILDMT-------PFTVTDLTPMETVVDLFRKLGLRQILVT---KNGILLGIITKKDCLRHT  694 (696)
T ss_pred             CceeeccCC-------cccccccCcHHHHHHHHHhhCceEEEEc---cCCeeEeeeehHHHHHhh
Confidence            345555554       7899999999999999999999999988   599999999999999864

>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.65  E-value=0.028  Score=48.31  Aligned_cols=61  Identities=13%  Similarity=0.214  Sum_probs=52.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...|+++|.++       +.++..+.|..|..+.+....+..+|+|++.+..-|+|.|.++.+...+.
T Consensus       587 ~v~VE~iMV~d-------v~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~  647 (931)
T KOG0476|consen  587 TVKVEHIMVTD-------VKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQ  647 (931)
T ss_pred             EEEeeeecccc-------ceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHH
Confidence            56789999986       99999999999999888877799999998655568999999999887653

>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]

Probab=94.62  E-value=0.088  Score=41.53  Aligned_cols=48  Identities=21%  Similarity=0.297  Sum_probs=41.6

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ++.++.+++++.+.+..+.+... .+||+|  ++++++|++++..++.++.
T Consensus       336 ~~~~v~~d~~~~~~~~~~~~~~~-p~aVvd--e~~r~vG~i~~~~vl~aL~  383 (386)
T COG4175         336 DVLTVDADTPLSEILARIRQAPC-PVAVVD--EDGRYVGIISRGELLEALA  383 (386)
T ss_pred             cccccCccchHHHHHHHHhcCCC-ceeEEc--CCCcEEEEecHHHHHHHHh
Confidence            37789999999998888887766 588898  8999999999999998864

>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]

Probab=94.56  E-value=0.032  Score=45.03  Aligned_cols=85  Identities=24%  Similarity=0.357  Sum_probs=57.6

Q ss_pred             cceeeeeccccchhhhh----hc-CC----Cccc-------HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCE
Q 033339           31 RPVVSSRFESVSSARME----EH-GF----ESTT-------ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA   94 (121)
Q Consensus        31 ~~~~~~~~~~~~~~~~~----~~-g~----~~~~-------v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~   94 (121)
                      .|.+.+.++++++..|.    .. |+    .+-+       ++.+-.-. ...+.+++.++|.+++.++++....++...
T Consensus        63 tPlvsSpMDTVtes~MAiaMAl~ggIg~IHhNctpe~QA~~v~~vK~~~-~g~~~~p~v~sp~~tvg~v~~~k~~~gF~g  141 (503)
T KOG2550|consen   63 TPLVSSPMDTVTESEMAIAMALLGGIGFIHHNCTPEDQADMVRRVKNYE-NGFINNPIVISPTTTVGEVKEAKEKHGFSG  141 (503)
T ss_pred             CceeccCCcccchhHHHHHHHhcCCceeeecCCCHHHHHHHHHHHHHhh-cccccCCcccCCcccchhhhhhcccccccc
Confidence            46777889998866442    22 22    1112       22221111 012344789999999999999999999999


Q ss_pred             EEEEeCCC-CCeeEEEEeHHHHH
Q 033339           95 LVVVKPGE-QKSVAGIITERGIF  116 (121)
Q Consensus        95 lpVvd~~~-~~~lvGiVt~~Di~  116 (121)
                      +||+.++. ..+|+|+||.+|+-
T Consensus       142 ~pvTe~g~~~~KLvG~vtsrdi~  164 (503)
T KOG2550|consen  142 IPVTEDGKRGSKLVGIITSRDIQ  164 (503)
T ss_pred             cccccCCcccceeEEEEehhhhh
Confidence            99995322 36899999999974

>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional

Probab=94.56  E-value=0.14  Score=41.11  Aligned_cols=59  Identities=14%  Similarity=0.108  Sum_probs=45.8

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .++.++|.+...    ..+...++.+..+++..|.+.+.+.+.|+|  ++++++|+|+..++.+.
T Consensus       274 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~  332 (400)
T PRK10070        274 FSAKDIARRTPN----GLIRKTPGFGPRSALKLLQDEDREYGYVIE--RGNKFVGAVSIDSLKTA  332 (400)
T ss_pred             cchhhhhhcCcc----cccccCCCCCHHHHHHHHHhcCCceEEEEc--CCCcEEEEEeHHHHHhh
Confidence            355667754311    023455778899999999999999999999  89999999999998754

>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]

Probab=94.12  E-value=0.12  Score=39.66  Aligned_cols=42  Identities=19%  Similarity=0.201  Sum_probs=35.6

Q ss_pred             cCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           75 TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        75 ~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .......+++..+...+...+||+|  ++|+++|.||..+++..
T Consensus       267 ~~~~~~~~~ls~~~~~~~~~~~Vvd--~~g~~~G~vt~~~l~~~  308 (309)
T COG1125         267 LEGFVDRDALSDFLARGRSVLPVVD--EDGRPLGTVTRADLLDE  308 (309)
T ss_pred             ccchhhHHHHHHHHhcCCceeEEEC--CCCcEeeEEEHHHHhhh
Confidence            3444556688889999999999999  89999999999999864

>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=94.05  E-value=0.18  Score=42.63  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=54.7

Q ss_pred             cchhhhhhcCCC---------cccHHHHhhhcCCCCCCceEEEcCC-CcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEE
Q 033339           41 VSSARMEEHGFE---------STTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII  110 (121)
Q Consensus        41 ~~~~~~~~~g~~---------~~~v~dim~~~~~~~~~~~~~v~~~-~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiV  110 (121)
                      ++|.+...+|+.         .+...++|.+...+  ++..+++.+ .++.+...+|.++.....||+-+.+.++++|.|
T Consensus       521 Iyda~I~~ng~P~l~~k~e~~~t~~~~v~~p~~~~--~~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv  598 (696)
T KOG0475|consen  521 IYDAHIELNGYPFLDSKSEFSSTLAIPVMEPCRSE--SCLIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFV  598 (696)
T ss_pred             HHHHHHHhcCCCCcccccccccchhhhhhchhcCc--hhheeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEE
Confidence            566666666661         12234555553210  124555555 899999999999999999999654578999999


Q ss_pred             eHHHHHHHhh
Q 033339          111 TERGIFKACH  120 (121)
Q Consensus       111 t~~Di~~~~~  120 (121)
                      .++|+..++.
T Consensus       599 ~rr~l~~~i~  608 (696)
T KOG0475|consen  599 LRRNLFLAIL  608 (696)
T ss_pred             chHHHHHHHh
Confidence            9999987765

>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]

Probab=93.96  E-value=0.044  Score=46.33  Aligned_cols=61  Identities=13%  Similarity=0.164  Sum_probs=51.6

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC---CeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~---~~lvGiVt~~Di~~~~  119 (121)
                      .+..++|+|.++       ++++..-+.+...++.+..+....+||+|+-+.   +++.|+|=++.++..+
T Consensus       580 r~L~a~ev~~~p-------vi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL  643 (762)
T KOG0474|consen  580 RNLTAGEVMSKP-------VICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL  643 (762)
T ss_pred             hhhhHhhhccCC-------eEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence            356889999985       999999999999999999999999999985222   5789999888877654

>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]

Probab=93.12  E-value=0.34  Score=36.76  Aligned_cols=50  Identities=16%  Similarity=0.184  Sum_probs=44.5

Q ss_pred             CCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           68 DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        68 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      -+|.+.++++-.+.-.++-+..+...-..|+|  +-|-+.|+||..|++.-+
T Consensus       139 LRPav~VPESKrvd~lLkeFR~~RnHMAIViD--EfGgVsGLVTIEDiLEqI  188 (293)
T COG4535         139 LRPAVVVPESKRVDRLLKEFRSQRNHMAIVID--EFGGVSGLVTIEDILEQI  188 (293)
T ss_pred             cccceecccchhHHHHHHHHHhhcCceEEEEe--ccCCeeeeEEHHHHHHHH
Confidence            34589999999999999999999999999999  889999999999998754

>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit

Probab=91.08  E-value=1.1  Score=35.40  Aligned_cols=46  Identities=26%  Similarity=0.305  Sum_probs=40.5

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .....++.+..++++.|...+...+.|++  +++++.|+|+.+++..+
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~~~~~~~~~  297 (363)
T TIGR01186       252 PITKTADKGPRSALQLMRDERVDSLYVVD--RQNKLVGVVDVESIKQA  297 (363)
T ss_pred             ceeecCCCCHHHHHHHHHhcCCceEEEEc--CCCCEEEEEeHHHHHHH
Confidence            45667788999999999999999999998  88999999999998764

This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	121
4fry_A	157	The Structure Of A Putative Signal-Transduction Pro		2e-06

>pdb|4FRY|A Chain A, The Structure Of A Putative Signal-Transduction Protein With Cbs Domains From Burkholderia Ambifaria Mc40-6 Length = 157

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 6/65 (9%)
Query: 50  GFESTTISDILKAKGKGADGSWLWCTT-DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAG 108
           G  STT++ ILKAK     G  ++  T +D VYDA+K M +  +GAL+VV   +   +AG
Sbjct: 3   GSMSTTVAQILKAKPDS--GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAG 57
Query: 109 IITER 113
           I+TER
Sbjct: 58  IVTER 62

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	121
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	7e-14
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	4e-04
4fry_A	157	Putative signal-transduction protein with CBS DOM;	7e-14
4fry_A	157	Putative signal-transduction protein with CBS DOM;	1e-04
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	4e-13
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	4e-05
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	3e-12
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	2e-07
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-09
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	3e-05
3fio_A	70	A cystathionine beta-synthase domain protein fused	4e-09
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	7e-09
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	5e-06
3ddj_A	296	CBS domain-containing protein; structural genomics	2e-08
3ddj_A	296	CBS domain-containing protein; structural genomics	3e-05
3ddj_A	296	CBS domain-containing protein; structural genomics	9e-05
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	2e-08
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	3e-07
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	3e-08
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	1e-07
1pvm_A	184	Conserved hypothetical protein TA0289; structural	7e-08
1pvm_A	184	Conserved hypothetical protein TA0289; structural	1e-04
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	1e-07
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	4e-06
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	2e-05
1pbj_A	125	Hypothetical protein; structural genomics, domain,	2e-07
1pbj_A	125	Hypothetical protein; structural genomics, domain,	3e-07
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	1e-06
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	2e-04
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	2e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	3e-06
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-05
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	1e-04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	3e-06
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	9e-06
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	6e-06
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	2e-05
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	7e-06
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	1e-05
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-05
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	1e-04
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	1e-05
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	1e-05
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	3e-05
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	2e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	2e-05
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	1e-04
1vr9_A	213	CBS domain protein/ACT domain protein; structural	6e-05
1vr9_A	213	CBS domain protein/ACT domain protein; structural	7e-05
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	3e-04
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	4e-04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	4e-04
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	5e-04
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	5e-04
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	5e-04
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	7e-04
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	5e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	5e-04
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	6e-04

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 63.1 bits (154), Expect = 7e-14
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 6/86 (6%)

Query: 35  SSRFESVSSARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA 94
                  S          +T + D+L  KG+      +    D ++ +A  ++  H +GA
Sbjct: 5   HHHHHHSSGRENLYFQGMATFVKDLLDRKGRDV----VTVGPDVSIGEAAGTLHAHKIGA 60

Query: 95  LVVVKPGEQKSVAGIITERGIFKACH 120
           +VV        V GI TER + KA  
Sbjct: 61  VVVT--DADGVVLGIFTERDLVKAVA 84

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str} Length = 165

 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 12/45 (26%), Positives = 20/45 (44%), Gaps = 3/45 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           C  + T    ++ MT      + V + G    +AGII+   + KA
Sbjct: 106 CQHNSTTDQLMEIMTGGRFRHVPVEENGR---LAGIISIGDVVKA 147

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 63.1 bits (154), Expect = 7e-14
 Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 4/70 (5%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  STT++ ILKAK   +  +    T +D VYDA+K M +  +GAL+VV   +   +AGI
Sbjct: 3   GSMSTTVAQILKAK-PDSGRTIYTVTKNDFVYDAIKLMAEKGIGALLVVDGDD---IAGI 58

Query: 110 ITERGIFKAC 119
           +TER   +  
Sbjct: 59  VTERDYARKV 68

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria} Length = 157

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 9/46 (19%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           +     +  + +  MT+H +  L V+  G+   + G+I+   + K+
Sbjct: 90  YVEPSQSTDECMALMTEHRMRHLPVLDGGK---LIGLISIGDLVKS 132

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 60.3 bits (147), Expect = 4e-13
 Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 7/67 (10%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  +   + GI+TER
Sbjct: 6   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEK---LVGILTER 58

Query: 114 GIFKACH 120
              +  +
Sbjct: 59  DFSRKSY 65

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1 Length = 135

 Score = 39.5 bits (93), Expect = 4e-05
 Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 3/47 (6%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
            +   ++T  D +  +T+  V  L V+  G+   V G+++   + K 
Sbjct: 85  AYVDLNNTNEDCMALITEMRVRHLPVLDDGK---VIGLLSIGDLVKD 128

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 58.4 bits (142), Expect = 3e-12
 Identities = 13/69 (18%), Positives = 27/69 (39%), Gaps = 7/69 (10%)

Query: 50  GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI 109
           G  +   S++LK          +      T+ +    + ++ VG  V+      K    +
Sbjct: 1   GAMAIRTSELLKRPP-------VSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAV 53

Query: 110 ITERGIFKA 118
           ++ER I +A
Sbjct: 54  VSERDILRA 62

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A Length = 141

 Score = 45.7 bits (109), Expect = 2e-07
 Identities = 20/117 (17%), Positives = 41/117 (35%), Gaps = 29/117 (24%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST---------------TISDILKAKGKGADGS 70
           + RP VS     ++      + ++                    +  DIL+A  +  D  
Sbjct: 11  LKRPPVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVAQRLDLD 70

Query: 71  W---------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
                     +     D V+ A + M +HN+  +VVV   +   + G+++ R +   
Sbjct: 71  GPAMPIANSPITVLDTDPVHVAAEKMRRHNIRHVVVV--NKNGELVGVLSIRDLCFE 125

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 50.2 bits (121), Expect = 3e-09
 Identities = 10/41 (24%), Positives = 23/41 (56%), Gaps = 2/41 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
                +T+  A + M +H++GAL +    ++  + G++T+R
Sbjct: 20  CVGEHETLTAAAQYMREHDIGALPICGDDDR--LHGMLTDR 58

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A Length = 133

 Score = 39.4 bits (93), Expect = 3e-05
 Identities = 9/46 (19%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           +   + ++ + +  M +H V  + V+       + GI+TE  I + 
Sbjct: 86  YVDANASIQEMLNVMEEHQVRRVPVISEHR---LVGIVTEADIARH 128

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 49.5 bits (119), Expect = 7e-09
 Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 2/42 (4%)

Query: 72  LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
           L      +V +A + M + +VG+LVV+   +  +V G  T+ 
Sbjct: 18  LGVKPSTSVQEASRLMMEFDVGSLVVIN--DDGNVVGFFTKS 57

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1 Length = 138

 Score = 41.8 bits (99), Expect = 5e-06
 Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
               +  + + ++ M +H +  +++ + G+   + GI T   + +A
Sbjct: 84  TANVNTPLGEVLRKMAEHRIKHILIEEEGK---IVGIFTLSDLLEA 126

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 35/123 (28%)

Query: 29  MLRPVVS-SRFESVSSAR--MEEHGFES-------------TTISDILKAKGKGADGS-- 70
           M   V +  +   +  A   M   GF                T+ + +K   K  D    
Sbjct: 162 MSTKVQTIYKEVRLDQAVKLMLRRGFRRLPVIDDDNKVVGIVTVVNAIKQLAKAVDKLDP 221

Query: 71  ---------------WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI 115
                           +      +V  A   M    +G+L+++   +  ++ GIITER +
Sbjct: 222 DYFYGKVVKDVMVTNLVTIDELASVNRAAAEMIVKRIGSLLIL--NKDNTIRGIITERDL 279

Query: 116 FKA 118
             A
Sbjct: 280 LIA 282

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 40.5 bits (95), Expect = 3e-05
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
               + A+  M   N G+L VV   ++    GI+TER       +
Sbjct: 109 TSDEFTAINIMVTRNFGSLPVVDINDK--PVGIVTEREFLLLYKD 151

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1 Length = 296

 Score = 39.4 bits (92), Expect = 9e-05
 Identities = 8/45 (17%), Positives = 21/45 (46%), Gaps = 4/45 (8%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
            + +D +  A K + +  +G ++V      + + G++T R +   
Sbjct: 33  LSKEDRLGSAFKKINEGGIGRIIVAN----EKIEGLLTTRDLLST 73

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 48.5 bits (116), Expect = 2e-08
 Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
              + +VYDA+ +M   +VG L VV       + G+++ + + +A
Sbjct: 29  IHENVSVYDAICTMFLEDVGTLFVV--DRDAVLVGVLSRKDLLRA 71

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A* Length = 159

 Score = 45.4 bits (108), Expect = 3e-07
 Identities = 22/119 (18%), Positives = 38/119 (31%), Gaps = 29/119 (24%)

Query: 29  MLRPVVSSRFESVSSAR--MEEHGFEST-------------TISDILKAKGKGADGSWL- 72
              PVV     SV  A   M      +              +  D+L+A     + + + 
Sbjct: 23  QSIPVVIHENVSVYDAICTMFLEDVGTLFVVDRDAVLVGVLSRKDLLRASIGQQELTSVP 82

Query: 73  ------------WCTTDDTVYDAVKSMTQHNVGAL-VVVKPGEQKSVAGIITERGIFKA 118
                        C  +D V D  K + +  + AL V+    +   V G +T+  + K 
Sbjct: 83  VHIIMTRMPNITVCRREDYVMDIAKHLIEKQIDALPVIKDTDKGFEVIGRVTKTNMTKI 141

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 47.6 bits (114), Expect = 3e-08
 Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 3/45 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
            T D  + D  K MT+ N+G+++VV   +     GIITER I KA
Sbjct: 17  VTKDAKLNDIAKVMTEKNIGSVIVVDGNK---PVGIITERDIVKA 58

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1 Length = 133

 Score = 46.0 bits (110), Expect = 1e-07
 Identities = 28/115 (24%), Positives = 44/115 (38%), Gaps = 27/115 (23%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSW-- 71
           M   V+S ++   ++     M E    S             T  DI+KA GKG       
Sbjct: 10  MKTQVISVTKDAKLNDIAKVMTEKNIGSVIVVDGNKPVGIITERDIVKAIGKGKSLETKA 69

Query: 72  --------LWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
                   +    D  +  A+  M Q N+  L VV   ++ ++ GII+ R I +A
Sbjct: 70  EEFMTASLITIREDSPITGALALMRQFNIRHLPVVD--DKGNLKGIISIRDITRA 122

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 47.4 bits (113), Expect = 7e-08
 Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 2/46 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC 119
              + TV+DAVK M ++++  LVV    +  +  G+++ER I K  
Sbjct: 22  VNWNTTVFDAVKIMNENHLYGLVVKD--DNGNDVGLLSERSIIKRF 65

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A Length = 184

 Score = 38.9 bits (91), Expect = 1e-04
 Identities = 9/46 (19%), Positives = 19/46 (41%), Gaps = 2/46 (4%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
              +D  V D    ++++ +    VV   +   V GI+T   + + 
Sbjct: 87  KVKSDYDVKDVAAYLSENGLERCAVVD--DPGRVVGIVTLTDLSRY 130

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 47.4 bits (113), Expect = 1e-07
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
               D +    + M  +++GAL VV   E   + GIITE+ + K 
Sbjct: 236 AKEGDKLKKIAEIMVTNDIGALPVVD--ENLRIKGIITEKDVLKY 278

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 43.2 bits (102), Expect = 4e-06
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
                T+  A+ +M ++    L VV  G  K V GIIT   I     
Sbjct: 17  VYPTTTIRKALMTMNENKYRRLPVVNAGNNK-VVGIITSMDIVDFMG 62

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A* Length = 280

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 10/45 (22%), Positives = 24/45 (53%), Gaps = 2/45 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
           +  + +A+++    NVG   +V   ++  +  +ITER + +A  +
Sbjct: 100 NADIDEAIETFLTKNVGGAPIVN--DENQLISLITERDVIRALLD 142

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 45.6 bits (109), Expect = 2e-07
 Identities = 11/45 (24%), Positives = 22/45 (48%), Gaps = 3/45 (6%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
                ++ D +++  ++  G+ VVVK G      GI+T   + +A
Sbjct: 14  IDITASLEDVLRNYVENAKGSSVVVKEGV---RVGIVTTWDVLEA 55

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1 Length = 125

 Score = 44.8 bits (107), Expect = 3e-07
 Identities = 22/116 (18%), Positives = 44/116 (37%), Gaps = 29/116 (25%)

Query: 29  MLRPVVS-SRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSWL- 72
           M+  V +     S+        E+   S+            T  D+L+A  +G D + + 
Sbjct: 7   MVTDVDTIDITASLEDVLRNYVENAKGSSVVVKEGVRVGIVTTWDVLEAIAEGDDLAEVK 66

Query: 73  ----------WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
                       +   T+ +A + M ++ V  L+V +  E   + G+I+   I +A
Sbjct: 67  VWEVMERDLVTISPRATIKEAAEKMVKNVVWRLLVEEDDE---IIGVISATDILRA 119

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           S ++ + L  +    +G    CT +D +   + ++ +  V    VV   +   + G++T 
Sbjct: 255 SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 311

Query: 113 RGIFKA 118
             I K 
Sbjct: 312 SDILKY 317

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C Length = 323

 Score = 38.0 bits (88), Expect = 2e-04
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
           C     V D ++ +TQ  V ++ ++   E   +  +    
Sbjct: 203 CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAY 240

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 43.8 bits (103), Expect = 2e-06
 Identities = 11/65 (16%), Positives = 22/65 (33%), Gaps = 6/65 (9%)

Query: 51  FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
            +S    D++    K      +   T   V  A  ++  + V A  +    +Q    G++
Sbjct: 32  MKSHRCYDLIPTSSK-----LVVFDTSLQVKKAFFALVTNGVRAAPLWDSKKQS-FVGML 85

Query: 111 TERGI 115
           T    
Sbjct: 86  TITDF 90

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           C   +T+   +  + +  V  LVVV   E   V GI++   I +A
Sbjct: 278 CYLHETLEAIINRLVEAEVHRLVVV--DEHDVVKGIVSLSDILQA 320

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 41.9 bits (98), Expect = 1e-05
 Identities = 15/79 (18%), Positives = 34/79 (43%), Gaps = 1/79 (1%)

Query: 43  SARMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE 102
           SA ++ +  E   I    +   + +    +  + + +++DAV S+ ++ +  L V+ P  
Sbjct: 100 SALVQIYELEEHKIETWREVYLQDSFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDPES 159

Query: 103 QKSVAGIITERGIFKACHN 121
                 I+T + I K    
Sbjct: 160 GN-TLYILTHKRILKFLKL 177

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E* Length = 330

 Score = 38.8 bits (90), Expect = 1e-04
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK 117
             T   VY A+    QH V AL VV   E+  V  I ++  +  
Sbjct: 206 VRTTTPVYVALGIFVQHRVSALPVV--DEKGRVVDIYSKFDVIN 247

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 42.5 bits (101), Expect = 3e-06
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 2/40 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
           C     V D ++ +TQ  V ++ ++   E   +  +    
Sbjct: 24  CQMTTPVIDVIQMLTQGRVSSVPII--DENGYLINVYEAY 61

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A Length = 144

 Score = 41.4 bits (98), Expect = 9e-06
 Identities = 13/66 (19%), Positives = 28/66 (42%), Gaps = 3/66 (4%)

Query: 53  STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITE 112
           S ++ + L  +    +G    CT +D +   + ++ +  V    VV   +   + G++T 
Sbjct: 76  SLSVGEALMRRSDDFEGV-YTCTKNDKLSTIMDNIRKARVHRFFVV--DDVGRLVGVLTL 132

Query: 113 RGIFKA 118
             I K 
Sbjct: 133 SDILKY 138

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 42.0 bits (99), Expect = 6e-06
 Identities = 7/40 (17%), Positives = 20/40 (50%), Gaps = 2/40 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
                +V DA++ + +  V  L V+   +  ++ G++++ 
Sbjct: 19  VKPSTSVDDALELLVEKKVTGLPVI--DDNWTLVGVVSDY 56

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana} Length = 180

 Score = 40.5 bits (95), Expect = 2e-05
 Identities = 16/111 (14%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 8   FLSHGNIVKSAVLQRIRLVNPMLRPVVSSRFESVSSARMEEHGFESTTISDILKAKGKGA 67
            +S  +++    +      +  L P V S +++ +  +          + D++       
Sbjct: 52  VVSDYDLLALDSISGRSQNDTNLFPDVDSTWKTFNELQKLISKTYGKVVGDLMTPSP--- 108

Query: 68  DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
               L       + DA + + +     L VV       + GI+T   + +A
Sbjct: 109 ----LVVRDSTNLEDAARLLLETKFRRLPVVD--ADGKLIGILTRGNVVRA 153

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 41.0 bits (97), Expect = 7e-06
 Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH 120
           D+ V      M+++N+  + VV   + + V GI+T   I +   
Sbjct: 78  DEPVDHVAIKMSKYNISGVPVVD--DYRRVVGIVTSEDISRLFG 119

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} PDB: 3kpd_A* 3kpc_A* Length = 122

 Score = 40.6 bits (96), Expect = 1e-05
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
           + ++ +A K + +HN+  L +V   E   + GIIT   I KA   
Sbjct: 17  NISIMEAAKILIKHNINHLPIVD--EHGKLVGIITSWDIAKALAQ 59

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
                T+ DA   M   ++  + +V     K + GI+++R +  A
Sbjct: 18  LLRTHTLNDAKHLMEALDIRHVPIVD--ANKKLLGIVSQRDLLAA 60

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1 Length = 160

 Score = 38.4 bits (90), Expect = 1e-04
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
              + ++   M +H +G L VV       + GIIT+        N
Sbjct: 94  QAGLKESAIYMQKHKIGCLPVVAKDV---LVGIITDSDFVTIAIN 135

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} Length = 138

 Score = 40.7 bits (96), Expect = 1e-05
 Identities = 10/45 (22%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
               + V +A + M ++ + +L V+   ++  V GI+T   I   
Sbjct: 21  AKRHEGVVEAFEKMLKYKISSLPVID--DENKVIGIVTTTDIGYN 63

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A* Length = 527

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 18/81 (22%), Positives = 29/81 (35%), Gaps = 6/81 (7%)

Query: 46  MEEHGF-----ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKP 100
           ME   F     E       L           +   +D TV +A+  M +H V  L VV  
Sbjct: 365 MEARNFKEPVNEHGHWWWSLAIAELELPAPPVILKSDATVGEAIALMKKHRVDQLPVVD- 423

Query: 101 GEQKSVAGIITERGIFKACHN 121
            +  SV G++ +  +     +
Sbjct: 424 QDDGSVLGVVGQETLITQIVS 444

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 8/45 (17%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
              D  + + V  + +  V   V V       + G+I    + K 
Sbjct: 29  VEEDTPIEEIVDRILEDPVTRTVYV--ARDNKLVGMIPVMHLLKV 71

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1 Length = 157

 Score = 38.0 bits (89), Expect = 1e-04
 Identities = 11/42 (26%), Positives = 20/42 (47%), Gaps = 2/42 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           D  + +A+K M  +N+  + VV   E+  + G +    I  A
Sbjct: 111 DTPLEEALKLMIDNNIQEMPVVD--EKGEIVGDLNSLEILLA 150

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 39.7 bits (93), Expect = 6e-05
 Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 2/42 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           +D +  A+    +H    L VV   E+  + G ++     +A
Sbjct: 88  EDNITHALLLFLEHQEPYLPVV--DEEMRLKGAVSLHDFLEA 127

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1 Length = 213

 Score = 39.3 bits (92), Expect = 7e-05
 Identities = 6/45 (13%), Positives = 15/45 (33%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
                TV + +  M Q+     +V     +    G++ +  +   
Sbjct: 26  VEESATVRECLHRMRQYQTNECIVKD--REGHFRGVVNKEDLLDL 68

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 37.4 bits (87), Expect = 3e-04
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
           DD++  AV  +  H    + V    +    AGI T R + K  + 
Sbjct: 99  DDSLMKAVGLIVNHPF--VCVEN--DDGYFAGIFTRREVLKQLNK 139

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus} Length = 157

 Score = 37.0 bits (86), Expect = 4e-04
 Identities = 7/45 (15%), Positives = 18/45 (40%), Gaps = 2/45 (4%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
               + +  A+  +T+    A+ V+       + G+I+   +  A
Sbjct: 26  VQPGNYLDHALLVLTKTGYSAIPVL--DTSYKLHGLISMTMMMDA 68

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 36.6 bits (85), Expect = 4e-04
 Identities = 15/76 (19%), Positives = 26/76 (34%), Gaps = 11/76 (14%)

Query: 45  RMEEHGFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK 104
           R+E    E   +  ++K               +D+   A++    H    +  V   E  
Sbjct: 78  RIEFERLEEMKVEQVMKQDIPVL-------KLEDSFAKALEMTIDHPF--ICAVN--EDG 126

Query: 105 SVAGIITERGIFKACH 120
              GI+T R I K  +
Sbjct: 127 YFEGILTRRAILKLLN 142

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} Length = 150

 Score = 36.6 bits (85), Expect = 5e-04
 Identities = 10/68 (14%), Positives = 25/68 (36%), Gaps = 7/68 (10%)

Query: 51  FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGII 110
           F+   + D++ +  K A          + +  A+  + +    A+ V+       + G+I
Sbjct: 12  FQQIFVKDLMISSEKVA-----HVQIGNGLEHALLVLVKSGYSAIPVL--DPMYKLHGLI 64

Query: 111 TERGIFKA 118
           +   I   
Sbjct: 65  STAMILDG 72

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A* Length = 511

 Score = 37.1 bits (87), Expect = 5e-04
 Identities = 13/40 (32%), Positives = 22/40 (55%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            T +  VYDA   M ++ +  + VV   +++ + GIIT R
Sbjct: 126 LTPEHQVYDAEHLMGKYRISGVPVVNNLDERKLVGIITNR 165

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 37.2 bits (86), Expect = 5e-04
 Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 55  TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERG 114
           ++ + L  +    DG    C   D +     ++    V  L VV   E   + GI++   
Sbjct: 252 SVGEALLKRPANFDGVHT-CRATDRLDGIFDAIKHSRVHRLFVV--DENLKLEGILSLAD 308

Query: 115 IFKA 118
           I   
Sbjct: 309 ILNY 312

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G* Length = 334

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 7/40 (17%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 74  CTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITER 113
            + +  VYD +K + + N+ A+ +V    + ++  +    
Sbjct: 198 ASMETKVYDVIKMLAEKNISAVPIVN--SEGTLLNVYESV 235

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls} Length = 128

 Score = 36.2 bits (84), Expect = 5e-04
 Identities = 12/111 (10%), Positives = 30/111 (27%), Gaps = 26/111 (23%)

Query: 32  PVVSSRFESVSSA--RMEEHGFEST------------TISDILKAKGKGADGSWLWC--- 74
             V +   S + A  R+   G                 +S +L+ +              
Sbjct: 15  YPVFTLGGSTADAARRLAASGCACAPVLDGERYLGMVHLSRLLEGRKGWPTVKEKLGEEL 74

Query: 75  -------TTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
                     + ++D + S+       + +    E     G+++ + I   
Sbjct: 75  LETVRSYRPGEQLFDNLISVAAAKCSVVPLA--DEDGRYEGVVSRKRILGF 123

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
             T   A++   ++ V +  VV   ++  + GII+ + I   
Sbjct: 17  PATRNYALELFKKYKVRSFPVVN--KEGKLVGIISVKRILVN 56

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 37.1 bits (86), Expect = 5e-04
 Identities = 8/42 (19%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
             TV++    M ++++  L V++   +  + G+I +  + K 
Sbjct: 237 HMTVHEVALKMAKYSIEQLPVIR--GEGDLIGLIRDFDLLKV 276

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1 Length = 282

 Score = 36.7 bits (85), Expect = 6e-04
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 77  DDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
           +DT+  A K M +++   +VVV    +    GI+T   I + 
Sbjct: 76  NDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRR 115

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	121
3ghd_A	70	A cystathionine beta-synthase domain protein FUSE	99.29
4esy_A	170	CBS domain containing membrane protein; structural	99.24
4esy_A	170	CBS domain containing membrane protein; structural	99.18
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	99.17
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	99.15
3fio_A	70	A cystathionine beta-synthase domain protein fused	99.12
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	99.11
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.09
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.08
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.07
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.07
3hf7_A	130	Uncharacterized CBS-domain protein; CSB-domain PAI	99.06
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.05
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	99.05
3oco_A	153	Hemolysin-like protein containing CBS domains; str	99.05
3kpb_A	122	Uncharacterized protein MJ0100; CBS domain, S-aden	99.05
4fry_A	157	Putative signal-transduction protein with CBS DOM;	99.05
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	99.05
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	99.04
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.04
3lv9_A	148	Putative transporter; CBS domain, PSI, MCSG, struc	99.04
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	99.04
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	99.04
1pbj_A	125	Hypothetical protein; structural genomics, domain,	99.04
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	99.03
3jtf_A	129	Magnesium and cobalt efflux protein; CBS domain, C	99.03
3i8n_A	130	Uncharacterized protein VP2912; APC64273.1, vibrio	99.03
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	99.03
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.02
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	99.01
3nqr_A	127	Magnesium and cobalt efflux protein CORC; structur	99.01
3lfr_A	136	Putative metal ION transporter; CBS, AMP, PSI, MCS	99.01
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	99.0
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	99.0
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	99.0
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.99
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.99
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.99
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.99
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.99
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.99
3k6e_A	156	CBS domain protein; streptococcus pneumoniae TIGR4	98.99
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.99
3gby_A	128	Uncharacterized protein CT1051; CBS domain, struct	98.99
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.98
3l2b_A	245	Probable manganase-dependent inorganic pyrophospha	98.98
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.97
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.96
2o16_A	160	Acetoin utilization protein ACUB, putative; struct	98.96
3lhh_A	172	CBS domain protein; structural genomics, PSI-2, pr	98.96
3fhm_A	165	Uncharacterized protein ATU1752; CBS domain, proka	98.96
2rih_A	141	Conserved protein with 2 CBS domains; bateman doma	98.95
3k2v_A	149	Putative D-arabinose 5-phosphate isomerase; KPSF-l	98.95
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.94
3lqn_A	150	CBS domain protein; csgid, structural genomics, un	98.94
1pbj_A	125	Hypothetical protein; structural genomics, domain,	98.93
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.93
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.93
2p9m_A	138	Hypothetical protein MJ0922; structural genomics,	98.92
3fv6_A	159	YQZB protein; CBS domain dimer, metabolism regulat	98.92
3oco_A	153	Hemolysin-like protein containing CBS domains; str	98.92
2yzi_A	138	Hypothetical protein PH0107; sheet/helix/sheet/she	98.91
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.91
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.91
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.9
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.9
2ef7_A	133	Hypothetical protein ST2348; CBS-domain, structura	98.9
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.9
2rc3_A	135	CBS domain; in SITU proteolysis, BR, structural ge	98.89
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.89
1y5h_A	133	Hypothetical protein RV2626C; CBS domain, unknown	98.89
3oi8_A	156	Uncharacterized protein; structural genomics, PSI-	98.89
1o50_A	157	CBS domain-containing predicted protein TM0935; CB	98.88
3sl7_A	180	CBS domain-containing protein CBSX2; CBS-PAIR prot	98.88
3ddj_A	296	CBS domain-containing protein; structural genomics	98.87
4gqw_A	152	CBS domain-containing protein CBSX1, chloroplasti;	98.87
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.86
2emq_A	157	Hypothetical conserved protein; CBS domains, NPPSF	98.86
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.85
1yav_A	159	Hypothetical protein BSU14130; cystathionine beta	98.85
3ctu_A	156	CBS domain protein; structural genomics, PSI-2, pr	98.85
1pvm_A	184	Conserved hypothetical protein TA0289; structural	98.84
3ocm_A	173	Putative membrane protein; structural genomics, PS	98.84
2nyc_A	144	Nuclear protein SNF4; bateman2 domain, AMP kinase,	98.84
4fry_A	157	Putative signal-transduction protein with CBS DOM;	98.83
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.82
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.8
2pfi_A	164	Chloride channel protein CLC-Ka; cystathionine bet	98.78
2j9l_A	185	Chloride channel protein 5; ION channel, ION trans	98.77
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.74
2d4z_A	250	Chloride channel protein; CLC chloride channel cyt	98.73
3kh5_A	280	Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, a	98.72
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.71
2uv4_A	152	5'-AMP-activated protein kinase subunit gamma-1; t	98.7
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.69
3ddj_A	296	CBS domain-containing protein; structural genomics	98.67
3t4n_C	323	Nuclear protein SNF4; CBS domain, nucleotide bindi	98.66
3kxr_A	205	Magnesium transporter, putative; cystathionine bet	98.65
2oux_A	286	Magnesium transporter; 10001B, structural genomics	98.62
2qrd_G	334	Protein C1556.08C; AMPK, ADP, ATP-binding, kinase,	98.58
2v8q_E	330	5'-AMP-activated protein kinase subunit gamma-1; p	98.57
1vr9_A	213	CBS domain protein/ACT domain protein; structural	98.57
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.56
3org_A	632	CMCLC; transporter, transport protein; 3.50A {Cyan	98.53
2yzq_A	282	Putative uncharacterized protein PH1780; sheet/hel	98.53
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.51
2yvy_A	278	MGTE, Mg2+ transporter MGTE; membrane protein, tra	98.49
3pc3_A	527	CG1753, isoform A; CBS, synthase, PLP, heme, amino	98.45
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	98.39
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	98.31
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	98.29
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.26
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.25
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.21
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.19
2zy9_A	473	Mg2+ transporter MGTE; membrane protien, metal tra	98.18
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	98.11
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	98.1
4af0_A	556	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	98.09
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	98.03
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	97.95
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.94
1me8_A	503	Inosine-5'-monophosphate dehydrogenase; alpha beta	97.87
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	97.68
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	97.56
2cu0_A	486	Inosine-5'-monophosphate dehydrogenase; structural	97.13

>3ghd_A A cystathionine beta-synthase domain protein FUSE ribbon-like domain; PF1953,APC40009,cystathionine beta-synthase domain protein; 1.81A {Pyrococcus furiosus}

Probab=99.29  E-value=1.3e-11  Score=74.82  Aligned_cols=46  Identities=26%  Similarity=0.448  Sum_probs=43.3

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +++++|++++.+|+++|.+++++++||++   +|+++||||.+|+++.+
T Consensus         2 ~vtv~p~~tv~ea~~~M~~~~i~~~~V~d---~~~lvGIvT~~Di~~~~   47 (70)
T 3ghd_A            2 AIVVQPKDTVDRVAKILSRNKAGSAVVME---GDEILGVVTERDILDKV   47 (70)
T ss_dssp             EEEECTTCBHHHHHHHHHHTTCSEEEEEE---TTEEEEEEEHHHHHHHT
T ss_pred             CEEECCCCcHHHHHHHHHHcCCCEEEEEE---CCEEEEEEEHHHHHHHH
Confidence            78999999999999999999999999997   68999999999998764

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.24  E-value=5.1e-12  Score=87.15  Aligned_cols=58  Identities=31%  Similarity=0.484  Sum_probs=53.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+|+|+|+++       ++++.+++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++++
T Consensus        17 ~~~V~diM~~~-------v~~v~~~~tl~~a~~~m~~~~~~~~pVvd--~~g~lvGiit~~Dll~~~   74 (170)
T 4esy_A           17 QVPIRDILTSP-------VVTVREDDTLDAVAKTMLEHQIGCAPVVD--QNGHLVGIITESDFLRGS   74 (170)
T ss_dssp             TSBGGGGCCSC-------CCCEETTSBHHHHHHHHHHTTCSEEEEEC--TTSCEEEEEEGGGGGGGT
T ss_pred             CCCHHHhcCCC-------CcEECCcCcHHHHHHHHHHcCCeEEEEEc--CCccEEEEEEHHHHHHHH
Confidence            57899999876       89999999999999999999999999999  899999999999998653

>4esy_A CBS domain containing membrane protein; structural genomics, PSI-biology; 2.01A {Sphaerobacter thermophilus}

Probab=99.18  E-value=2.3e-11  Score=83.78  Aligned_cols=58  Identities=22%  Similarity=0.332  Sum_probs=53.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|+++       ++++++++++.+|+++|.+++++.+||++   +|+++||||.+|+++++.
T Consensus       104 ~~~v~~im~~~-------~~tv~~~~~l~~a~~~m~~~~~~~lpVvd---~g~lvGivt~~Dil~~l~  161 (170)
T 4esy_A          104 KLTASAVMTQP-------VVTAAPEDSVGSIADQMRRHGIHRIPVVQ---DGVPVGIVTRRDLLKLLL  161 (170)
T ss_dssp             TCBHHHHCBCC-------SCCBCTTSBHHHHHHHHHHTTCSEEEEEE---TTEEEEEEEHHHHTTTSC
T ss_pred             ccchhhhcccC-------cccCCcchhHHHHHHHHHHcCCcEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            46789999986       89999999999999999999999999997   689999999999998764

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=99.17  E-value=5.4e-11  Score=80.10  Aligned_cols=58  Identities=19%  Similarity=0.366  Sum_probs=53.4

Q ss_pred             ccHHHHhhh--cCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~--~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .+++++|.+  .       ++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        28 ~~v~dim~~~~~-------~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd--~~~~~~Givt~~dl~~~~~   87 (149)
T 3k2v_A           28 LRVNDIMHTGDE-------IPHVGLQATLRDALLEITRKNLGMTAICD--DDMNIIGIFTDGDLRRVFD   87 (149)
T ss_dssp             SBGGGTSBCGGG-------SCEECTTCBHHHHHHHHHHHTSSEEEEEC--TTCBEEEEEEHHHHHHHHC
T ss_pred             cCHHHHhcCCCC-------CeEECCCCcHHHHHHHHHhCCCcEEEEEC--CCCcEEEEecHHHHHHHHh
Confidence            589999987  5       88999999999999999999999999998  7899999999999998753

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=99.15  E-value=7.8e-12  Score=85.96  Aligned_cols=59  Identities=19%  Similarity=0.307  Sum_probs=54.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|.+.       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        97 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~~vGiit~~dil~~~~  155 (180)
T 3sl7_A           97 GKVVGDLMTPS-------PLVVRDSTNLEDAARLLLETKFRRLPVVD--ADGKLIGILTRGNVVRAAL  155 (180)
T ss_dssp             TCBHHHHSEES-------CCCEETTSBHHHHHHHHTTSTTCEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             cccHHHHhCCC-------ceEeCCCCcHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHHHHHHH
Confidence            56899999975       78999999999999999999999999998  7899999999999998864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=99.11  E-value=2.1e-10  Score=76.45  Aligned_cols=59  Identities=22%  Similarity=0.308  Sum_probs=54.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++.+.
T Consensus        84 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd--~~g~~~Giit~~dil~~~~  142 (152)
T 4gqw_A           84 GKLVGDLMTPA-------PLVVEEKTNLEDAAKILLETKYRRLPVVD--SDGKLVGIITRGNVVRAAL  142 (152)
T ss_dssp             CCBHHHHSEES-------CCCEESSSBHHHHHHHHHHSSCCEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             cccHHHhcCCC-------ceEECCCCcHHHHHHHHHHCCCCEEEEEC--CCCcEEEEEEHHHHHHHHH
Confidence            46899999985       78999999999999999999999999998  7899999999999999875

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.09  E-value=3.1e-10  Score=74.42  Aligned_cols=59  Identities=17%  Similarity=0.275  Sum_probs=53.0

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...+++++|++        +.++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        67 ~~~~v~~~m~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~~~Giit~~dll~~l~  125 (127)
T 3nqr_A           67 EAFSMDKVLRT--------AVVVPESKRVDRMLKEFRSQRYHMAIVID--EFGGVSGLVTIEDILELIV  125 (127)
T ss_dssp             CCCCHHHHCBC--------CCEEETTCBHHHHHHHHHHTTCCEEEEEC--TTSCEEEEEEHHHHHHHC-
T ss_pred             CCCCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEEHHHHHHHHh
Confidence            35789999954        67899999999999999999999999998  7899999999999998764

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.08  E-value=2.3e-10  Score=75.57  Aligned_cols=61  Identities=13%  Similarity=0.279  Sum_probs=52.7

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .+++++|++..     +++++++++++.+|++.|.+++++.+||+++ ++++++|+||.+|+++++.
T Consensus         2 ~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVv~~-~~~~lvGivt~~dl~~~~~   62 (130)
T 3hf7_A            2 VSVNDIMVPRN-----EIVGIDINDDWKSIVRQLTHSPHGRIVLYRD-SLDDAISMLRVREAYRLMT   62 (130)
T ss_dssp             CBHHHHSEEGG-----GCCEEETTSCHHHHHHHHHTCSSSEEEEESS-SGGGEEEEEEHHHHHHHHT
T ss_pred             cCHHHhCccHH-----HEEEEcCCCCHHHHHHHHHHCCCCeEEEEcC-CCCcEEEEEEHHHHHHHHh
Confidence            57999997532     2889999999999999999999999999961 2589999999999998754

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.07  E-value=3.9e-10  Score=74.19  Aligned_cols=58  Identities=17%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|+ +       +.++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        71 ~~~v~~~m~-~-------~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd--~~g~~vGivt~~dil~~l~  128 (130)
T 3i8n_A           71 QKQLGAVMR-P-------IQVVLNNTALPKVFDQMMTHRLQLALVVD--EYGTVLGLVTLEDIFEHLV  128 (130)
T ss_dssp             TSBHHHHSE-E-------CCEEETTSCHHHHHHHHHHHTCCEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             cCCHHHHhc-C-------CcCcCCCCcHHHHHHHHHHcCCeEEEEEc--CCCCEEEEEEHHHHHHHHc
Confidence            578999994 3       78999999999999999999999999998  7899999999999999874

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.07  E-value=2.8e-10  Score=73.60  Aligned_cols=58  Identities=31%  Similarity=0.424  Sum_probs=53.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ++++++|.++       +.++.+++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+++++.
T Consensus         1 ~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~G~vt~~dl~~~~~   58 (122)
T 3kpb_A            1 TLVKDILSKP-------PITAHSNISIMEAAKILIKHNINHLPIVD--EHGKLVGIITSWDIAKALA   58 (122)
T ss_dssp             CBHHHHCCSC-------CCCEETTSBHHHHHHHHHHHTCSCEEEEC--TTSBEEEEECHHHHHHHHH
T ss_pred             CchHHhhCCC-------CEEeCCCCcHHHHHHHHHHcCCCeEEEEC--CCCCEEEEEEHHHHHHHHH
Confidence            3688999975       88999999999999999999999999998  7899999999999998753

>3hf7_A Uncharacterized CBS-domain protein; CSB-domain PAIR, AMP, PSI, MCSG, STR genomics, midwest center for structural genomics; HET: AMP; 2.75A {Klebsiella pneumoniae subsp}

Probab=99.06  E-value=4.8e-10  Score=74.03  Aligned_cols=58  Identities=10%  Similarity=0.175  Sum_probs=52.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|. +       ++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        69 ~~~v~~~m~-~-------~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd--~~g~lvGiit~~Dil~~l~  126 (130)
T 3hf7_A           69 KEIMLRAAD-E-------IYFVPEGTPLSTQLVKFQRNKKKVGLVVD--EYGDIQGLVTVEDILEEIV  126 (130)
T ss_dssp             HHHHHHHSB-C-------CCEEETTCBHHHHHHHHHHHCCCEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             hhhHHHhcc-C-------CeEeCCCCcHHHHHHHHHhcCCeEEEEEc--CCCCEEEEeeHHHHHHHHh
Confidence            356899993 3       78999999999999999999999999998  7899999999999999875

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.05  E-value=4.1e-10  Score=75.54  Aligned_cols=58  Identities=17%  Similarity=0.337  Sum_probs=52.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++| ++       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        87 ~~~v~~~m-~~-------~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~g~~~Giit~~dil~~l~  144 (148)
T 3lv9_A           87 KIELEEIL-RD-------IIYISENLTIDKALERIRKEKLQLAIVVD--EYGGTSGVVTIEDILEEIV  144 (148)
T ss_dssp             CCCGGGTC-BC-------CEEEETTSBHHHHHHHHHHHTCSEEEEEC--TTSSEEEEEEHHHHHHHHH
T ss_pred             CccHHHhc-CC-------CeEECCCCCHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEEHHHHHHHHh
Confidence            45677888 43       89999999999999999999999999998  7899999999999998864

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=99.05  E-value=2.3e-10  Score=78.38  Aligned_cols=59  Identities=17%  Similarity=0.122  Sum_probs=52.4

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+++++|.+..     .+.++.+++|+.+|+++|.+++++++||+|  ++|+++|+||.+|+++++
T Consensus        15 ~~~~~iM~P~~-----~v~~v~~~~t~~~a~~~m~~~~~s~~pVvd--~~~~lvGiit~~Di~~~~   73 (156)
T 3k6e_A           15 GQEETFLTPAK-----NLAVLIDTHNADHATLLLSQMTYTRVPVVT--DEKQFVGTIGLRDIMAYQ   73 (156)
T ss_dssp             TTGGGGEEETT-----SSCCEETTSBHHHHHHHHTTSSSSEEEEEC--C-CBEEEEEEHHHHHHHH
T ss_pred             ccHHHhCcchh-----HeEEECCcCCHHHHHHHHHHcCCcEEEEEc--CCCcEEEEEEecchhhhh
Confidence            46889998753     389999999999999999999999999998  789999999999998765

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=99.05  E-value=4.1e-10  Score=76.11  Aligned_cols=58  Identities=24%  Similarity=0.417  Sum_probs=53.2

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++| ++       ++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        85 ~~~v~~~m-~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~~g~~vGivt~~dil~~l~  142 (153)
T 3oco_A           85 KAKISTIM-RD-------IVSVPENMKVPDVMEEMSAHRVPMAIVID--EYGGTSGIITDKDVYEELF  142 (153)
T ss_dssp             TSBGGGTC-BC-------CEEEETTSBHHHHHHHHHHTTCSCEEEEC--TTSCEEEEECHHHHHHHHH
T ss_pred             CCcHHHHh-CC-------CeEECCCCCHHHHHHHHHHcCCcEEEEEe--CCCCEEEEeeHHHHHHHHh
Confidence            46788999 54       89999999999999999999999999998  7899999999999999875

>3kpb_A Uncharacterized protein MJ0100; CBS domain, S-adenosylmethionine, conformational change, unknown function; HET: SAM; 1.60A {Methanocaldococcus jannaschii} SCOP: d.37.1.0 PDB: 3kpd_A* 3kpc_A*

Probab=99.05  E-value=2.6e-10  Score=73.76  Aligned_cols=58  Identities=24%  Similarity=0.373  Sum_probs=53.3

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .++.++|.+.       +.++.+++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+++++.
T Consensus        62 ~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd--~~g~~~Givt~~dl~~~l~  119 (122)
T 3kpb_A           62 KTIEEIMTRN-------VITAHEDEPVDHVAIKMSKYNISGVPVVD--DYRRVVGIVTSEDISRLFG  119 (122)
T ss_dssp             CBGGGTSBSS-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHHC
T ss_pred             cCHHHHhcCC-------CeEECCCCCHHHHHHHHHHhCCCeEEEEC--CCCCEEEEEeHHHHHHHhh
Confidence            4788999875       88999999999999999999999999998  7799999999999999874

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=99.05  E-value=4.8e-10  Score=75.78  Aligned_cols=59  Identities=20%  Similarity=0.355  Sum_probs=54.4

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...+++++|.++       +.++.+++++.+|+++|.+++++.+||+|   +|+++|+||.+|+++++.
T Consensus        76 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---~g~~~Giit~~dil~~l~  134 (157)
T 4fry_A           76 KATRVEEIMTAK-------VRYVEPSQSTDECMALMTEHRMRHLPVLD---GGKLIGLISIGDLVKSVI  134 (157)
T ss_dssp             SSCBHHHHSBSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             cccCHHHHcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            367899999975       88999999999999999999999999997   699999999999999865

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=99.05  E-value=1.8e-10  Score=78.35  Aligned_cols=62  Identities=24%  Similarity=0.355  Sum_probs=54.3

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCC---eeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK---SVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~---~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.+.+     +++++.+++++.+|+++|.+++++.+||+|  ++|   +++|+||.+|+++++.
T Consensus        79 ~~~~v~~~m~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~~~~~vGiit~~dil~~l~  143 (159)
T 3fv6_A           79 TSVPVHIIMTRMP-----NITVCRREDYVMDIAKHLIEKQIDALPVIK--DTDKGFEVIGRVTKTNMTKILV  143 (159)
T ss_dssp             TTCBGGGTSEETT-----SCCCBCTTSBHHHHHHHHHHHTCSEEEEEE--ECSSSEEEEEEEEHHHHHHHHH
T ss_pred             cCcCHHHHHcCCC-----CcEEECCCCCHHHHHHHHHHcCCcEEEEEe--CCCcceeEEEEEEHHHHHHHHH
Confidence            3567899998721     178999999999999999999999999998  677   9999999999999865

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=99.04  E-value=2.7e-10  Score=82.61  Aligned_cols=59  Identities=14%  Similarity=0.157  Sum_probs=54.2

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++|+|+++       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus         6 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lpVvd--~~~~l~Giit~~di~~~~~   64 (245)
T 3l2b_A            6 KLKVEDLEMDK-------IAPLAPEVSLKMAWNIMRDKNLKSIPVAD--GNNHLLGMLSTSNITATYM   64 (245)
T ss_dssp             CCBGGGSCCBC-------CCCBCTTCBHHHHHHHHHHTTCSEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             cCcHHHhcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCEEEEEEEHHHHHHHHH
Confidence            46799999875       88999999999999999999999999998  7899999999999998763

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.04  E-value=4.6e-10  Score=73.83  Aligned_cols=58  Identities=9%  Similarity=0.237  Sum_probs=51.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|++        ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        68 ~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~pVvd--~~g~~~Giit~~Dil~~l~  125 (129)
T 3jtf_A           68 ALDIRSLVRP--------AVFIPEVKRLNVLLREFRASRNHLAIVID--EHGGISGLVTMEDVLEQIV  125 (129)
T ss_dssp             TSCGGGGCBC--------CCEEETTCBHHHHHHHHHTSSCCEEEEEC--C-CCEEEEEEHHHHHHHHH
T ss_pred             CcCHHHHhCC--------CeEeCCCCcHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEEHHHHHHHHh
Confidence            4678899853        68999999999999999999999999998  7899999999999998864

>3lv9_A Putative transporter; CBS domain, PSI, MCSG, structural genomics, protein structur initiative, midwest center for structural genomics; 2.40A {Clostridium difficile 630}

Probab=99.04  E-value=3e-10  Score=76.17  Aligned_cols=61  Identities=13%  Similarity=0.278  Sum_probs=54.3

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|++..     +++++.+++++.+|++.|.+++++++||++  ++ |+++|+||.+|+++++
T Consensus        21 ~~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~~lvGivt~~dl~~~~   82 (148)
T 3lv9_A           21 EEKKIREIMVPRT-----DMVCIYESDSEEKILAILKEEGVTRYPVCR--KNKDDILGFVHIRDLYNQK   82 (148)
T ss_dssp             GTCBGGGTSEETT-----TCCCEETTCCHHHHHHHHHHSCCSEEEEES--SSTTSEEEEEEHHHHHHHH
T ss_pred             CCCCHHHccccHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCCcEEEEEEHHHHHHHH
Confidence            4678999999721     188999999999999999999999999998  66 8999999999999875

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=99.04  E-value=2.5e-10  Score=84.44  Aligned_cols=60  Identities=13%  Similarity=0.148  Sum_probs=53.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+|+|+|+++       ++++.+++++.+|+++|.++++..+|||+++++++++|+||++|+++++
T Consensus        12 ~~~v~diMt~~-------vvtv~~~~tv~~~~~lm~~~~~~~~PVVd~~~~~~LvGiIt~~dl~~~l   71 (250)
T 2d4z_A           12 NIQVGDIMVRD-------VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLL   71 (250)
T ss_dssp             SCBTTSSSBSS-------CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHH
T ss_pred             CCChHHhcCCC-------CeEECCCCCHHHHHHHHHhcCCCEEEEEecCCCCeEEEEEEHHHHHHHH
Confidence            56899999986       8999999999999999999999999999832247899999999999875

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=99.04  E-value=5.7e-10  Score=77.07  Aligned_cols=58  Identities=12%  Similarity=0.224  Sum_probs=52.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++| ++       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus       106 ~~~v~~im-~~-------~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~g~lvGiit~~Dil~~l~  163 (172)
T 3lhh_A          106 RLELVDLV-KN-------CNFVPNSLSGMELLEHFRTTGSQMVFVVD--EYGDLKGLVTLQDMMDALT  163 (172)
T ss_dssp             CCCGGGGC-BC-------CEEEETTCCHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             cccHHHHh-cC-------CeEeCCCCCHHHHHHHHHHcCCeEEEEEe--CCCCEEEEeeHHHHHHHHh
Confidence            45678888 43       89999999999999999999999999998  7899999999999999874

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=99.04  E-value=6.7e-10  Score=71.92  Aligned_cols=59  Identities=17%  Similarity=0.325  Sum_probs=54.2

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.+.       +.++.+++++.+|++.|.+++++.+||+|  + |+++|+||.+|+++++.
T Consensus        63 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd--~-~~~~Gvit~~dl~~~l~  121 (125)
T 1pbj_A           63 AEVKVWEVMERD-------LVTISPRATIKEAAEKMVKNVVWRLLVEE--D-DEIIGVISATDILRAKM  121 (125)
T ss_dssp             TTSBHHHHCBCG-------GGEECTTSCHHHHHHHHHHHTCSEEEEEE--T-TEEEEEEEHHHHHHHHC
T ss_pred             cccCHHHHcCCC-------CeEECCCCCHHHHHHHHHhcCCcEEEEEE--C-CEEEEEEEHHHHHHHHH
Confidence            467899999875       89999999999999999999999999998  5 99999999999998864

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=99.03  E-value=1e-09  Score=72.55  Aligned_cols=65  Identities=18%  Similarity=0.297  Sum_probs=53.6

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.+.. ..++.++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        76 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~g~~~Giit~~dil~~l~  140 (144)
T 2nyc_A           76 SLSVGEALMRRSDD-FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD--DVGRLVGVLTLSDILKYIL  140 (144)
T ss_dssp             CSBHHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             CccHHHHHhcCccc-cCCCeEECCCCcHHHHHHHHHHCCCCEEEEEC--CCCCEEEEEEHHHHHHHHH
Confidence            56899999873100 00178999999999999999999999999998  7899999999999998864

>3jtf_A Magnesium and cobalt efflux protein; CBS domain, CORC, AMP, structural genomics, PSI-2, protein S initiative; HET: MSE AMP; 2.00A {Bordetella parapertussis}

Probab=99.03  E-value=3.4e-10  Score=74.47  Aligned_cols=60  Identities=10%  Similarity=0.256  Sum_probs=53.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|++..     +++++++++++.+|++.|.+++++++||++  ++ ++++|+||.+|+++++
T Consensus         4 ~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~~~~Givt~~dl~~~~   64 (129)
T 3jtf_A            4 ERTVADIMVPRS-----RMDLLDISQPLPQLLATIIETAHSRFPVYE--DDRDNIIGILLAKDLLRYM   64 (129)
T ss_dssp             CCBHHHHCEEGG-----GCCCEETTSCHHHHHHHHHHSCCSEEEEES--SSTTCEEEEEEGGGGGGGG
T ss_pred             CCCHHHhCccHH-----HeEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCcEEEEEEHHHHHhHh
Confidence            568999999532     278999999999999999999999999998  54 8999999999998764

>3i8n_A Uncharacterized protein VP2912; APC64273.1, vibrio parahaemolyticus RIMD 2210633, structural genomics, PSI-2; 2.15A {Vibrio parahaemolyticus}

Probab=99.03  E-value=1.5e-10  Score=76.20  Aligned_cols=62  Identities=11%  Similarity=0.248  Sum_probs=52.6

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~~  120 (121)
                      ...+++++|++..     +++++.+++++.+|++.|.+++++++||++  ++ |+++|+||.+|+++++.
T Consensus         4 ~~~~v~~iM~~~~-----~v~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~~~~Givt~~dl~~~~~   66 (130)
T 3i8n_A            4 QDVPVTQVMTPRP-----VVFRVDATMTINEFLDKHKDTPFSRPLVYS--EQKDNIIGFVHRLELFKMQQ   66 (130)
T ss_dssp             ---CCTTTSCCBC-----CCCEEETTSBHHHHHHHTTTCSCSCCEEES--SSTTCEEEECCHHHHHHHHH
T ss_pred             CcCCHhhCCCcHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCCcEEEEEEHHHHHHHHh
Confidence            3567899999753     267999999999999999999999999998  66 89999999999998753

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=99.03  E-value=1.6e-10  Score=75.81  Aligned_cols=59  Identities=10%  Similarity=0.211  Sum_probs=54.1

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhhC
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN  121 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~~  121 (121)
                      .+++++|.++       +.++.+++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+++++.+
T Consensus        68 ~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVvd--~~g~~~Giit~~dll~~l~~  126 (128)
T 3gby_A           68 EKLGEELLET-------VRSYRPGEQLFDNLISVAAAKCSVVPLAD--EDGRYEGVVSRKRILGFLAE  126 (128)
T ss_dssp             CBCCGGGCBC-------CCCBCTTSBGGGSHHHHHHCSSSEEEEEC--TTCBEEEEEEHHHHHHHHHT
T ss_pred             CcHHHHccCC-------CcEECCCCCHHHHHHHHHhCCCcEEEEEC--CCCCEEEEEEHHHHHHHHHh
Confidence            5688999875       78999999999999999999999999998  78999999999999998753

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.02  E-value=3.6e-10  Score=75.11  Aligned_cols=61  Identities=11%  Similarity=0.217  Sum_probs=53.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|++..     ++.++.+++++.+|++.|.+++++++||++  ++ ++++|+||.+|+++++.
T Consensus         2 ~~~v~~iM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~~~vGivt~~dl~~~~~   63 (136)
T 3lfr_A            2 DLQVRDIMVPRS-----QMISIKATQTPREFLPAVIDAAHSRYPVIG--ESHDDVLGVLLAKDLLPLIL   63 (136)
T ss_dssp             -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTTCEEEEEEGGGGGGGGG
T ss_pred             CCChHhccccHH-----HEEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCCcEEEEEEHHHHHHHHH
Confidence            467999999532     278999999999999999999999999998  56 79999999999997653

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=99.01  E-value=6.7e-10  Score=72.89  Aligned_cols=58  Identities=19%  Similarity=0.401  Sum_probs=53.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       +.++++++++.+|++.|.+++.+.+||+|  + |+++|+||.+|+++++.
T Consensus        73 ~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~-g~~~Giit~~dil~~l~  130 (133)
T 1y5h_A           73 TATAGELARDS-------IYYVDANASIQEMLNVMEEHQVRRVPVIS--E-HRLVGIVTEADIARHLP  130 (133)
T ss_dssp             TSBHHHHHTTC-------CCCEETTCCHHHHHHHHHHHTCSEEEEEE--T-TEEEEEEEHHHHHHTCC
T ss_pred             ccCHHHHhcCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEEE--C-CEEEEEEEHHHHHHHHH
Confidence            57899999875       88999999999999999999999999998  5 99999999999998764

>3nqr_A Magnesium and cobalt efflux protein CORC; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: AMP; 2.00A {Salmonella typhimurium}

Probab=99.01  E-value=3.8e-10  Score=73.98  Aligned_cols=60  Identities=12%  Similarity=0.303  Sum_probs=52.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|++..     +++++++++++.+|++.|.+++++++||++  ++ |+++|+||.+|+++++
T Consensus         2 ~~~v~diM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~~~vGivt~~dl~~~~   62 (127)
T 3nqr_A            2 DQRVRDIMIPRS-----QMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKDHIEGILMAKDLLPFM   62 (127)
T ss_dssp             -CBHHHHSEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTTCEEEEEEGGGGGGGG
T ss_pred             CcCHHHhcccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEEc--CCCCcEEEEEEHHHHHHHH
Confidence            467999999632     278999999999999999999999999998  66 8999999999998765

>3lfr_A Putative metal ION transporter; CBS, AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 1.53A {Pseudomonas syringae}

Probab=99.01  E-value=3.6e-10  Score=75.10  Aligned_cols=58  Identities=14%  Similarity=0.273  Sum_probs=52.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|++        ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++.+.
T Consensus        69 ~~~v~~~m~~--------~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd--~~g~lvGiit~~Dil~~l~  126 (136)
T 3lfr_A           69 SDDVKKLLRP--------ATFVPESKRLNVLLREFRANHNHMAIVID--EYGGVAGLVTIEDVLEQIV  126 (136)
T ss_dssp             GCCGGGTCBC--------CCEEETTCBHHHHHHHHHHHTCCEEEEEC--TTSCEEEEEEHHHHHTTC-
T ss_pred             CcCHHHHcCC--------CeEECCCCcHHHHHHHHHhcCCeEEEEEe--CCCCEEEEEEHHHHHHHHh
Confidence            5678899954        68999999999999999999999999998  7899999999999998753

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=99.00  E-value=4.2e-10  Score=80.48  Aligned_cols=59  Identities=17%  Similarity=0.197  Sum_probs=53.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|.++       ++++.+++++.+|++.|.++++..+||+|  ++|+++|+||.+|++..+.
T Consensus       115 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVVD--~~g~lvGiIT~~Dil~~i~  173 (205)
T 3kxr_A          115 HEPLISLLSED-------SRALTANTTLLDAAEAIEHSREIELPVID--DAGELIGRVTLRAATALVR  173 (205)
T ss_dssp             TSBGGGGCCSS-------CCCEETTSCHHHHHHHHHTSSCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             cchHHHHhcCC-------CeEECCCCCHHHHHHHHHhcCCCEEEEEc--CCCeEEEEEEHHHHHHHHH
Confidence            46788888765       89999999999999999999999999999  7899999999999998764

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=99.00  E-value=1.7e-09  Score=73.93  Aligned_cols=62  Identities=32%  Similarity=0.496  Sum_probs=54.9

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|.+...    ++.++.+++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++++
T Consensus        22 ~~~~v~dim~~~~~----~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~~~~~Givt~~dl~~~~   83 (165)
T 3fhm_A           22 MATFVKDLLDRKGR----DVVTVGPDVSIGEAAGTLHAHKIGAVVVTD--ADGVVLGIFTERDLVKAV   83 (165)
T ss_dssp             SSCBHHHHHHHHCS----CCCEECTTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHH
T ss_pred             hhcCHHHHhccCCC----CCeEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEHHHHHHHH
Confidence            46799999997300    288999999999999999999999999998  789999999999998864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.99  E-value=9.3e-10  Score=73.71  Aligned_cols=60  Identities=12%  Similarity=0.185  Sum_probs=54.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.+..     +++++.+++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++++
T Consensus        14 ~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~~~~~~~~~~pVvd--~~~~~~Givt~~dl~~~~   73 (150)
T 3lqn_A           14 QIFVKDLMISSE-----KVAHVQIGNGLEHALLVLVKSGYSAIPVLD--PMYKLHGLISTAMILDGI   73 (150)
T ss_dssp             HCBHHHHSEEGG-----GSCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHT
T ss_pred             cCChhhcccCCC-----ceEEECCCCcHHHHHHHHHHcCCcEEEEEC--CCCCEEEEEEHHHHHHHH
Confidence            568999999531     278999999999999999999999999998  789999999999999875

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.99  E-value=9.7e-10  Score=72.55  Aligned_cols=57  Identities=26%  Similarity=0.428  Sum_probs=52.2

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ...+++++|.++       ++++.+++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++
T Consensus         5 ~~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~Givt~~dl~~   61 (138)
T 2yzi_A            5 MKAPIKVYMTKK-------LLGVKPSTSVQEASRLMMEFDVGSLVVIN--DDGNVVGFFTKSDIIR   61 (138)
T ss_dssp             TTSBGGGTCBCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHH
T ss_pred             hhhhHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEeHHHHHH
Confidence            456899999865       89999999999999999999999999998  7899999999999974

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.99  E-value=6.4e-10  Score=72.99  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=53.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       +.++++++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+++.+.
T Consensus        66 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~l~Vvd--~~g~~~Giit~~dll~~~~  124 (133)
T 2ef7_A           66 ETKAEEFMTAS-------LITIREDSPITGALALMRQFNIRHLPVVD--DKGNLKGIISIRDITRAID  124 (133)
T ss_dssp             TCBGGGTSEEC-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             ccCHHHHcCCC-------CEEECCCCCHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEEHHHHHHHHH
Confidence            46789999875       88999999999999999999999999998  7899999999999998764

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.99  E-value=1e-09  Score=72.92  Aligned_cols=58  Identities=19%  Similarity=0.339  Sum_probs=52.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCC--eeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQK--SVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~--~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.++       +.++.+++++.+|++.|.+++++.+||+|  +++  +++|+||.+|+++++
T Consensus         4 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~~~Givt~~dl~~~~   63 (141)
T 2rih_A            4 AIRTSELLKRP-------PVSLPETATIREVATELAKNRVGLAVLTA--RDNPKRPVAVVSERDILRAV   63 (141)
T ss_dssp             -CBGGGGCCSC-------CEEEETTCBHHHHHHHHHHHTCSEEEEEE--TTEEEEEEEEEEHHHHHHHH
T ss_pred             ceEHHHHhcCC-------CeEeCCCCcHHHHHHHHHHcCCCEEEEEc--CCCcceeEEEEEHHHHHHHH
Confidence            35788999875       89999999999999999999999999998  677  999999999999875

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.99  E-value=9.8e-10  Score=74.48  Aligned_cols=61  Identities=13%  Similarity=0.181  Sum_probs=54.1

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|.+..     +++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++
T Consensus        12 ~~~~v~~im~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~lvGivt~~dl~~~~   72 (159)
T 1yav_A           12 LEATVGQFMIEAD-----KVAHVQVGNNLEHALLVLTKTGYTAIPVLD--PSYRLHGLIGTNMIMNSI   72 (159)
T ss_dssp             TTCBHHHHSEEGG-----GSCCEETTCBHHHHHHHHHHHCCSEEEEEC--TTCBEEEEEEHHHHHHHH
T ss_pred             hHhhHHHHhCCcc-----ceEEECCCCcHHHHHHHHHhCCCcEEEEEC--CCCCEEEEeEHHHHHHHh
Confidence            3578999998721     188999999999999999999999999998  789999999999999875

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.99  E-value=1.4e-09  Score=74.01  Aligned_cols=59  Identities=19%  Similarity=0.308  Sum_probs=53.8

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.+.       ++++.+++++.+|+++|.+++++.+||+|  + |+++|+||.+|+++++.
T Consensus        76 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~-g~lvGiit~~dil~~~~  134 (160)
T 2o16_A           76 FETPLFEVMHTD-------VTSVAPQAGLKESAIYMQKHKIGCLPVVA--K-DVLVGIITDSDFVTIAI  134 (160)
T ss_dssp             CCCBHHHHSCSC-------EEEBCTTSBHHHHHHHHHHTTCSCEEEEE--T-TEEEEEECHHHHHHHHH
T ss_pred             cccCHHHHhcCC-------CeEECCCCCHHHHHHHHHHhCCCEEEEEE--C-CEEEEEEEHHHHHHHHH
Confidence            357899999875       89999999999999999999999999998  5 99999999999998753

>3k6e_A CBS domain protein; streptococcus pneumoniae TIGR4, structural genomics, PSI-2, protein structure initiative; 2.81A {Streptococcus pneumoniae}

Probab=98.99  E-value=3.5e-10  Score=77.53  Aligned_cols=56  Identities=27%  Similarity=0.369  Sum_probs=50.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|.++       +.++.+++++.+|+++|.++++  +||+|  ++|+++||||.+|+++++
T Consensus        85 ~~~v~~im~~~-------~~~v~~~~~l~~~~~~m~~~~~--lpVVd--~~g~l~GiiT~~Dil~~~  140 (156)
T 3k6e_A           85 DTDIVHMTKTD-------VAVVSPDFTITEVLHKLVDESF--LPVVD--AEGIFQGIITRKSILKAV  140 (156)
T ss_dssp             TSBGGGTCBCS-------CCCBCTTCCHHHHHHHTTTSSE--EEEEC--TTSBEEEEEEHHHHHHHH
T ss_pred             ccCHHHhhcCC-------ceecccccHHHHHHHHHHHcCC--eEEEe--cCCEEEEEEEHHHHHHHH
Confidence            46788888875       8999999999999999998765  99999  899999999999999986

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.99  E-value=8.1e-10  Score=72.80  Aligned_cols=60  Identities=25%  Similarity=0.436  Sum_probs=53.7

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcC-----CCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.++       +.++++++++.+|++.|.+++     ++.+||+|  ++|+++|+||.+|+++.+.
T Consensus        71 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~~~~~~~~~l~Vvd--~~g~~~Giit~~dll~~~~  135 (138)
T 2p9m_A           71 LETTIGDVMTKD-------VITIHEDASILEAIKKMDISGKKEEIINQLPVVD--KNNKLVGIISDGDIIRTIS  135 (138)
T ss_dssp             SSCBHHHHSCSS-------CCCEETTSBHHHHHHHHTCC-----CCCEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             CCcCHHHHhCCC-------cEEECCCCCHHHHHHHHHhcCCccccccEEEEEC--CCCeEEEEEEHHHHHHHHH
Confidence            356899999875       889999999999999999999     99999998  7899999999999998764

>3gby_A Uncharacterized protein CT1051; CBS domain, structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Chlorobium tepidum tls}

Probab=98.99  E-value=4.6e-10  Score=73.56  Aligned_cols=57  Identities=14%  Similarity=0.207  Sum_probs=52.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.+.       +.++++++++.+|++.|.+++.+++||+|  + |+++|+||.+|+.+++
T Consensus         4 s~~v~~~m~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~-~~~~Givt~~dl~~~~   60 (128)
T 3gby_A            4 SVTFSYLAETD-------YPVFTLGGSTADAARRLAASGCACAPVLD--G-ERYLGMVHLSRLLEGR   60 (128)
T ss_dssp             TCBGGGGCBCC-------SCCEETTSBHHHHHHHHHHHTCSEEEEEE--T-TEEEEEEEHHHHHTTC
T ss_pred             ceEHHHhhcCC-------cceECCCCCHHHHHHHHHHCCCcEEEEEE--C-CEEEEEEEHHHHHHHH
Confidence            46789999886       88999999999999999999999999998  6 9999999999998764

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.98  E-value=1.5e-09  Score=73.33  Aligned_cols=59  Identities=15%  Similarity=0.258  Sum_probs=53.8

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC--CCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE--QKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~--~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|.++       ++++.+++++.+|++.|.+++++++||+|  +  +|+++|+||.+|+++.+
T Consensus        11 ~~~~v~dim~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~pVvd--~~~~~~~~Givt~~dl~~~~   71 (164)
T 2pfi_A           11 HHVRVEHFMNHS-------ITTLAKDTPLEEVVKVVTSTDVTEYPLVE--STESQILVGIVQRAQLVQAL   71 (164)
T ss_dssp             CSCBHHHHCBCC-------CCCEETTCBHHHHHHHHHTCCCSEEEEES--CTTTCBEEEEEEHHHHHHHH
T ss_pred             cCCCHHHHcCCC-------CeEECCCCcHHHHHHHHHhCCCCceeEEe--cCCCCEEEEEEEHHHHHHHH
Confidence            357899999985       88999999999999999999999999998  5  68999999999998865

>3l2b_A Probable manganase-dependent inorganic pyrophosphatase; family II, CBS domain, bateman domain, AP4A, diadenosine polyphosphate, DRTGG; HET: B4P; 2.27A {Clostridium perfringens} PDB: 3l31_A*

Probab=98.98  E-value=6.4e-10  Score=80.61  Aligned_cols=58  Identities=21%  Similarity=0.291  Sum_probs=48.8

Q ss_pred             cccHHHHhh-hcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~-~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|+ ++       +.++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|++++.
T Consensus       184 ~~~v~~im~~~~-------~~~~~~~~~~~~~~~~m~~~~~~~~pVvd--~~~~~~Giit~~dll~~~  242 (245)
T 3l2b_A          184 SLPVDYVMTKDN-------LVAVSTDDLVEDVKVTMSETRYSNYPVID--ENNKVVGSIARFHLISTH  242 (245)
T ss_dssp             GSBHHHHSBCTT-------CCCEETTSBHHHHHHHHHHHCCSEEEEEC--TTCBEEEEEECC------
T ss_pred             CCceeeEecCCc-------cEEECCCCcHHHHHHHHHhcCCceEEEEc--CCCeEEEEEEHHHhhchh
Confidence            568999998 54       89999999999999999999999999998  789999999999998864

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.97  E-value=4.9e-10  Score=81.88  Aligned_cols=59  Identities=17%  Similarity=0.311  Sum_probs=54.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|+++       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus       220 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~~~lvGiit~~Dil~~~~  278 (282)
T 2yzq_A          220 NKPVAEIMTRD-------VIVATPHMTVHEVALKMAKYSIEQLPVIR--GEGDLIGLIRDFDLLKVLV  278 (282)
T ss_dssp             CCBGGGTCBSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTTEEEEEEEHHHHGGGGC
T ss_pred             cCCHHHhcCCC-------CceeCCCCCHHHHHHHHHHcCcceeEEEC--CCCCEEEEEeHHHHHHHHH
Confidence            46788999875       89999999999999999999999999998  6789999999999998764

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.96  E-value=1e-09  Score=72.23  Aligned_cols=59  Identities=19%  Similarity=0.313  Sum_probs=53.7

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.++       +.++++++++.+|++.|.+++++.+||+|   +|+++|+||.+|+++++.
T Consensus        72 ~~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---~g~~~Giit~~dll~~~~  130 (135)
T 2rc3_A           72 KDTQVKEIMTRQ-------VAYVDLNNTNEDCMALITEMRVRHLPVLD---DGKVIGLLSIGDLVKDAI  130 (135)
T ss_dssp             GGSBGGGTSBCS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHhccCC-------CeEECCCCcHHHHHHHHHHhCCCEEEEEe---CCEEEEEEEHHHHHHHHH
Confidence            357889999875       88999999999999999999999999997   589999999999998865

>2o16_A Acetoin utilization protein ACUB, putative; structural genomics, unknown function, PSI-2, protein struct initiative; 1.90A {Vibrio cholerae} SCOP: d.37.1.1

Probab=98.96  E-value=9.3e-10  Score=74.97  Aligned_cols=58  Identities=19%  Similarity=0.281  Sum_probs=53.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.++       ++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++
T Consensus         4 ~~~v~dim~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~pVvd--~~~~lvGivt~~dl~~~~   61 (160)
T 2o16_A            4 MIKVEDMMTRH-------PHTLLRTHTLNDAKHLMEALDIRHVPIVD--ANKKLLGIVSQRDLLAAQ   61 (160)
T ss_dssp             CCBGGGTSEES-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHH
T ss_pred             cCcHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEeHHHHHHHH
Confidence            46789999875       88999999999999999999999999998  789999999999998764

>3lhh_A CBS domain protein; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG, cell membrane; HET: MSE AMP; 2.10A {Shewanella oneidensis}

Probab=98.96  E-value=8.6e-10  Score=76.16  Aligned_cols=62  Identities=13%  Similarity=0.296  Sum_probs=52.8

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~~  120 (121)
                      ...+++++|++..     +++++++++++.+|++.|.+++++.+||++  ++ ++++|+||.+|+++++.
T Consensus        40 ~~~~v~diM~~~~-----~~~~v~~~~~v~~a~~~m~~~~~~~~pVvd--~~~~~lvGivt~~dl~~~~~  102 (172)
T 3lhh_A           40 DERTISSLMVPRS-----DIVFLDLNLPLDANLRTVMQSPHSRFPVCR--NNVDDMVGIISAKQLLSESI  102 (172)
T ss_dssp             ---CTTTTSEEGG-----GCCCEETTSCHHHHHHHHHTCCCSEEEEES--SSTTSEEEEEEHHHHHHHHH
T ss_pred             CCCCHHHhCccHH-----HeEEEcCCCCHHHHHHHHHhCCCCEEEEEe--CCCCeEEEEEEHHHHHHHHh
Confidence            4678999999432     288999999999999999999999999998  66 89999999999998754

>3fhm_A Uncharacterized protein ATU1752; CBS domain, prokaryotic, bound nucleotide, AMP, NADH, struct genomics, PSI-2; HET: AMP NAI; 2.70A {Agrobacterium tumefaciens str}

Probab=98.96  E-value=9.4e-10  Score=75.20  Aligned_cols=58  Identities=21%  Similarity=0.260  Sum_probs=53.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       ++++.+++++.+|+++|.+++++.+||+|  + |+++|+||.+|+++++.
T Consensus        92 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~-g~~~Giit~~dil~~~~  149 (165)
T 3fhm_A           92 QQSVSVAMTKN-------VVRCQHNSTTDQLMEIMTGGRFRHVPVEE--N-GRLAGIISIGDVVKARI  149 (165)
T ss_dssp             TSBGGGTSBSS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEEE--T-TEEEEEEEHHHHHHHTT
T ss_pred             cCCHHHHhcCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEE--C-CEEEEEEEHHHHHHHHH
Confidence            56889999865       88999999999999999999999999998  6 99999999999998864

>2rih_A Conserved protein with 2 CBS domains; bateman domain, AMP binding protein, ligand-BIND protein; 2.10A {Pyrobaculum aerophilum} SCOP: d.37.1.1 PDB: 2rif_A

Probab=98.95  E-value=9.1e-10  Score=73.14  Aligned_cols=57  Identities=23%  Similarity=0.282  Sum_probs=51.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|.++       +.++.++ ++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++
T Consensus        70 ~~~v~~~m~~~-------~~~v~~~-~l~~a~~~m~~~~~~~l~Vvd--~~g~~~Giit~~dll~~~  126 (141)
T 2rih_A           70 DGPAMPIANSP-------ITVLDTD-PVHVAAEKMRRHNIRHVVVVN--KNGELVGVLSIRDLCFER  126 (141)
T ss_dssp             TSBSGGGCBCC-------CEEETTS-BHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHSCH
T ss_pred             CCCHHHHcCCC-------CeEEcCC-CHHHHHHHHHHcCCeEEEEEc--CCCcEEEEEEHHHHHHHH
Confidence            46788999875       8999999 999999999999999999998  789999999999998654

>3k2v_A Putative D-arabinose 5-phosphate isomerase; KPSF-like protein, CBS domain, structural genomics, PSI-2, P structure initiative; HET: MSE CMK; 1.95A {Klebsiella pneumoniae subsp} PDB: 3fna_A*

Probab=98.95  E-value=1.1e-09  Score=73.58  Aligned_cols=56  Identities=13%  Similarity=0.324  Sum_probs=50.9

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ...++.++|.+.       +.++.+++++.+|++.|.+++++.+||+|  ++ +++|+||.+|+++
T Consensus        93 ~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~-~~~Giit~~dil~  148 (149)
T 3k2v_A           93 RDASIADVMTRG-------GIRIRPGTLAVDALNLMQSRHITCVLVAD--GD-HLLGVVHMHDLLR  148 (149)
T ss_dssp             TTCBHHHHSEES-------CCEECTTCBHHHHHHHHHHHTCSEEEEEE--TT-EEEEEEEHHHHTC
T ss_pred             ccCcHHHHcCCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEec--CC-EEEEEEEHHHhhc
Confidence            357899999875       78999999999999999999999999998  44 9999999999975

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.94  E-value=1.5e-09  Score=73.55  Aligned_cols=59  Identities=22%  Similarity=0.307  Sum_probs=53.5

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.+        ++++++++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        94 ~~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~~vGiit~~dll~~l~  152 (157)
T 1o50_A           94 IAKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVVD--EKGEIVGDLNSLEILLALW  152 (157)
T ss_dssp             SSCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             cCCcHHHHcCC--------CeEECCCCCHHHHHHHHHHCCCcEEEEEc--CCCEEEEEEEHHHHHHHHH
Confidence            35689999986        47899999999999999999999999998  7899999999999998864

>3lqn_A CBS domain protein; csgid, structural genomics, unknown function, center for structural genomics of infectious diseases; 1.80A {Bacillus anthracis} SCOP: d.37.1.0

Probab=98.94  E-value=1.1e-09  Score=73.40  Aligned_cols=57  Identities=21%  Similarity=0.341  Sum_probs=51.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       +.++.+++++.+|++.|.++++  +||+|  ++|+++|+||.+|+++++.
T Consensus        86 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~~~~~~~--l~Vvd--~~g~~~Giit~~dil~~l~  142 (150)
T 3lqn_A           86 EMKVEQVMKQD-------IPVLKLEDSFAKALEMTIDHPF--ICAVN--EDGYFEGILTRRAILKLLN  142 (150)
T ss_dssp             GCBGGGTCBSS-------CCEEETTCBHHHHHHHHHHCSE--EEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             cCCHHHHhcCC-------CceeCCCCCHHHHHHHHHhCCE--EEEEC--CCCcEEEEEEHHHHHHHHH
Confidence            56788999865       8999999999999999999987  99998  7899999999999998864

>1pbj_A Hypothetical protein; structural genomics, domain, PSI, protein structure initiative; 1.40A {Methanothermobacter thermautotrophicusdelta H} SCOP: d.37.1.1

Probab=98.93  E-value=3.1e-09  Score=68.69  Aligned_cols=55  Identities=20%  Similarity=0.313  Sum_probs=50.6

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +++++|.++       +.++.+++++.+|++.|.+++.+.+||+|   +|+++|+||.+|+++.+
T Consensus         2 ~v~~~m~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~~~G~it~~dl~~~~   56 (125)
T 1pbj_A            2 RVEDVMVTD-------VDTIDITASLEDVLRNYVENAKGSSVVVK---EGVRVGIVTTWDVLEAI   56 (125)
T ss_dssp             CHHHHCBCS-------CCEEETTCBHHHHHHHHHHHCCCEEEEEE---TTEEEEEEEHHHHHHHH
T ss_pred             CHHHhcCCC-------ceEECCCCcHHHHHHHHHHcCCCEEEEEe---CCeeEEEEeHHHHHHHH
Confidence            688999875       89999999999999999999999999997   79999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.93  E-value=2e-09  Score=74.82  Aligned_cols=59  Identities=27%  Similarity=0.420  Sum_probs=53.7

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|.+.       ++++++++++.+|+++|.+++++.+||++  ++|+++|+||.+|+++.+
T Consensus         7 ~~~~v~~im~~~-------~~~v~~~~~l~ea~~~~~~~~~~~~pVvd--~~g~~vGivt~~dl~~~~   65 (184)
T 1pvm_A            7 MFMRVEKIMNSN-------FKTVNWNTTVFDAVKIMNENHLYGLVVKD--DNGNDVGLLSERSIIKRF   65 (184)
T ss_dssp             CCCBGGGTSBTT-------CCEEETTCBHHHHHHHHHHHTCCEEEEEC--TTSCEEEEEEHHHHHHHT
T ss_pred             cccCHHHhcCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEeHHHHHHHH
Confidence            357899999875       89999999999999999999999999998  679999999999998864

>2p9m_A Hypothetical protein MJ0922; structural genomics, collaboratory for structural genomics, secsg; 2.59A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID}

Probab=98.92  E-value=2e-09  Score=70.91  Aligned_cols=58  Identities=19%  Similarity=0.409  Sum_probs=52.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHH-HHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGI-FKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di-~~~~  119 (121)
                      ..+++++|.++       +.++.+++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+ .+.+
T Consensus         7 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~Givt~~dl~~~~~   65 (138)
T 2p9m_A            7 NIKVKDVMTKN-------VITAKRHEGVVEAFEKMLKYKISSLPVID--DENKVIGIVTTTDIGYNLI   65 (138)
T ss_dssp             TCBGGGTSBCS-------CCCEETTSBHHHHHHHHHHHTCCEEEEEC--TTCBEEEEEEHHHHHHHHT
T ss_pred             cCCHHHhhcCC-------ceEECCCCcHHHHHHHHHHCCCcEEEEEC--CCCeEEEEEEHHHHHHHHH
Confidence            56889999875       88999999999999999999999999998  78999999999999 7654

>3fv6_A YQZB protein; CBS domain dimer, metabolism regulator, central glycolytic G regulator, transcription; 1.95A {Bacillus subtilis} PDB: 3fwr_A* 3fws_A*

Probab=98.92  E-value=2.1e-09  Score=72.99  Aligned_cols=57  Identities=23%  Similarity=0.429  Sum_probs=52.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.+        ++++.+++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++++
T Consensus        16 ~~~v~~im~~--------~~~v~~~~~~~~a~~~m~~~~~~~~~Vvd--~~~~~~Givt~~dl~~~~   72 (159)
T 3fv6_A           16 KLQVKDFQSI--------PVVIHENVSVYDAICTMFLEDVGTLFVVD--RDAVLVGVLSRKDLLRAS   72 (159)
T ss_dssp             TCBGGGSCBC--------CCEEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHH
T ss_pred             hCCHHHHcCC--------CEEECCCCcHHHHHHHHHHCCCCEEEEEc--CCCcEEEEEeHHHHHHHh
Confidence            5689999985        35999999999999999999999999998  789999999999999865

>3oco_A Hemolysin-like protein containing CBS domains; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.20A {Oenococcus oeni}

Probab=98.92  E-value=1.6e-09  Score=73.21  Aligned_cols=61  Identities=16%  Similarity=0.242  Sum_probs=53.2

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEE-eCCC-CCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVV-KPGE-QKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVv-d~~~-~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|++..     +++++.+++++.+|++.|.+++++++||+ +  + +|+++|+||.+|+++++
T Consensus        18 ~~~~v~~iM~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVv~d--~~~~~lvGivt~~dl~~~~   80 (153)
T 3oco_A           18 NDKVASDVMVDRT-----SMSVVDVDETIADALLLYLEEQYSRFPVTAD--NDKDKIIGYAYNYDIVRQA   80 (153)
T ss_dssp             HHCBHHHHSEEGG-----GCCCEETTSBHHHHHHHHHHHCCSEEEEEET--TEEEEEEEEEEHHHHHHHH
T ss_pred             CCCEeeeEecchh-----heEEEcCCCCHHHHHHHHHhCCCCEEEEEEC--CCCCcEEEEEEHHHHHhHH
Confidence            3578999999621     28899999999999999999999999999 5  3 48999999999999875

>2yzi_A Hypothetical protein PH0107; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; 2.25A {Pyrococcus horikoshii} SCOP: d.37.1.1

Probab=98.91  E-value=2.3e-09  Score=70.72  Aligned_cols=58  Identities=14%  Similarity=0.392  Sum_probs=53.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       +.++++++++.+|++.|.+++++.+ |+|  ++|+++|+||.+|+++++.
T Consensus        71 ~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~l-Vvd--~~g~~~Giit~~dil~~~~  128 (138)
T 2yzi_A           71 DIPVERIMTRN-------LITANVNTPLGEVLRKMAEHRIKHI-LIE--EEGKIVGIFTLSDLLEASR  128 (138)
T ss_dssp             TSBGGGTCBCS-------CCEEETTSBHHHHHHHHHHHTCSEE-EEE--ETTEEEEEEEHHHHHHHHH
T ss_pred             cCCHHHHhhCC-------CeEECCCCcHHHHHHHHHhcCCCEE-EEC--CCCCEEEEEEHHHHHHHHH
Confidence            56788999875       8999999999999999999999999 998  7899999999999998864

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.91  E-value=1.3e-09  Score=73.40  Aligned_cols=61  Identities=15%  Similarity=0.174  Sum_probs=53.2

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|.+..     +++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++
T Consensus         9 ~~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~m~~~~~~~~pVvd--~~~~~~Givt~~dl~~~~   69 (157)
T 2emq_A            9 MQMTVKPFLIPAD-----KVAHVQPGNYLDHALLVLTKTGYSAIPVLD--TSYKLHGLISMTMMMDAI   69 (157)
T ss_dssp             -CCBSTTTCEEGG-----GSCCBCTTSBHHHHHHHHHHSSSSEEEEEC--TTCCEEEEEEHHHHHHHS
T ss_pred             hhCcHHhhccCCc-----cceEECCCCcHHHHHHHHHHCCceEEEEEc--CCCCEEEEeeHHHHHHHH
Confidence            3568899998611     278999999999999999999999999998  789999999999998864

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.91  E-value=1.5e-09  Score=75.55  Aligned_cols=61  Identities=16%  Similarity=0.272  Sum_probs=53.9

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|++..     +++++.+++++.+|++.|.+++++.+||++  ++ ++++|+||.+|+++++
T Consensus        34 ~~~~v~diM~~~~-----~v~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~~lvGivt~~Dl~~~~   95 (173)
T 3ocm_A           34 AERSIRSIMTPRT-----DVSWVNIDDDAATIRQQLTAAPHSFFPVCR--GSLDEVVGIGRAKDLVADL   95 (173)
T ss_dssp             TTSCSTTTSEEGG-----GCCCEETTSCHHHHHHHHHHSSCSEEEEES--SSTTSEEEEEEHHHHHHHH
T ss_pred             CCCCHHHhCCcHH-----HeEEEeCCCCHHHHHHHHHhCCCCEEEEEe--CCCCCEEEEEEHHHHHHHH
Confidence            4678999998532     278999999999999999999999999998  55 8999999999999875

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.90  E-value=6.6e-09  Score=77.52  Aligned_cols=65  Identities=18%  Similarity=0.297  Sum_probs=55.2

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|.+.+.. .++++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus       255 ~~~v~~~m~~~~~~-~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~~~l~Giit~~Dil~~l~  319 (323)
T 3t4n_C          255 SLSVGEALMRRSDD-FEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD--DVGRLVGVLTLSDILKYIL  319 (323)
T ss_dssp             TSBHHHHGGGSCTT-CCCCEEECTTCBHHHHHHHHHHSCCCEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             cCCHHHHHhhcccc-CCCCEEECCCCCHHHHHHHHHHhCCCEEEEEC--CCCcEEEEEEHHHHHHHHH
Confidence            45799999973100 01289999999999999999999999999998  7899999999999999874

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.90  E-value=1.8e-09  Score=78.52  Aligned_cols=58  Identities=28%  Similarity=0.460  Sum_probs=52.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|.++       ++++++++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++
T Consensus       222 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~~g~~~Givt~~dil~~l  279 (280)
T 3kh5_A          222 NVRMEEIMKRD-------VITAKEGDKLKKIAEIMVTNDIGALPVVD--ENLRIKGIITEKDVLKYF  279 (280)
T ss_dssp             HCBHHHHSBSS-------CCCBCTTCBHHHHHHHHHHHTCCEEEEEC--TTCBEEEEEEHHHHGGGG
T ss_pred             CCcHHHHhcCC-------CEEECCCCCHHHHHHHHHHCCCCEEEEEC--CCCeEEEEEeHHHHHHhh
Confidence            35788888765       89999999999999999999999999998  788999999999999875

>2ef7_A Hypothetical protein ST2348; CBS-domain, structural genomics, NPPSFA, national project on structural and functional analyses; 2.10A {Sulfolobus tokodaii} SCOP: d.37.1.1

Probab=98.90  E-value=3.7e-09  Score=69.29  Aligned_cols=57  Identities=35%  Similarity=0.536  Sum_probs=51.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.++       +.++.+++++.+|++.|.+++.+.+||+|   +|+++|+||.+|+.+.+
T Consensus         3 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~~~Givt~~dl~~~~   59 (133)
T 2ef7_A            3 EEIVKEYMKTQ-------VISVTKDAKLNDIAKVMTEKNIGSVIVVD---GNKPVGIITERDIVKAI   59 (133)
T ss_dssp             CCBGGGTSBCS-------CCEEETTCBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHH
T ss_pred             cccHHHhccCC-------CEEECCCCcHHHHHHHHHhcCCCEEEEEE---CCEEEEEEcHHHHHHHH
Confidence            46788999875       88999999999999999999999999997   68999999999998765

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.90  E-value=2.1e-09  Score=76.83  Aligned_cols=58  Identities=16%  Similarity=0.257  Sum_probs=53.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.++       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++.+
T Consensus        71 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGiit~~Dil~~~  128 (213)
T 1vr9_A           71 DSSVFNKVSLP-------DFFVHEEDNITHALLLFLEHQEPYLPVVD--EEMRLKGAVSLHDFLEAL  128 (213)
T ss_dssp             TSBSGGGCBCT-------TCCEETTSBHHHHHHHHHHCCCSEEEEEC--TTCBEEEEEEHHHHHHHH
T ss_pred             CCcHHHHccCC-------CEEECCCCcHHHHHHHHHHhCCCEEEEEc--CCCEEEEEEEHHHHHHHH
Confidence            45789999875       88999999999999999999999999998  679999999999999875

>2rc3_A CBS domain; in SITU proteolysis, BR, structural genomics, PSI-2, protein structure initiative; HET: NAD; 1.60A {Nitrosomonas europaea atcc 19718} SCOP: d.37.1.1

Probab=98.89  E-value=6.8e-09  Score=68.27  Aligned_cols=58  Identities=34%  Similarity=0.638  Sum_probs=50.3

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .+++++|.+...    +++++++++++.+|++.|.+++.+++||+|   +|+++|+||.+|+++.
T Consensus         6 ~~v~~im~~~~~----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd---~~~~~Givt~~dl~~~   63 (135)
T 2rc3_A            6 KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERDFSRK   63 (135)
T ss_dssp             CBHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHH
T ss_pred             eeHHHHHhcCCC----CcEEECCCCcHHHHHHHHHhcCCCEEEEEE---CCEEEEEEehHHHHHH
Confidence            389999983100    289999999999999999999999999997   7899999999999863

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.89  E-value=9.8e-10  Score=74.64  Aligned_cols=61  Identities=13%  Similarity=0.223  Sum_probs=53.6

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|++..     +++++++++++.+|++.|.+++++++||++  ++ ++++|+||.+|+++++
T Consensus        36 ~~~~v~diM~~~~-----~~~~v~~~~~i~~a~~~m~~~~~~~~pVvd--~~~~~lvGivt~~dl~~~~   97 (156)
T 3oi8_A           36 SDLEVRDAMITRS-----RMNVLKENDSIERITAYVIDTAHSRFPVIG--EDKDEVLGILHAKDLLKYM   97 (156)
T ss_dssp             TTCBGGGTCEEGG-----GCCCEETTCCHHHHHHHHHHHCCSEEEEES--SSTTCEEEEEEGGGGGGGS
T ss_pred             CCCCHhheeeeHH-----HeEEECCCCCHHHHHHHHHHCCCCEEEEEc--CCCCcEEEEEEHHHHHHHH
Confidence            4678999999732     288999999999999999999999999998  56 5999999999998764

>1y5h_A Hypothetical protein RV2626C; CBS domain, unknown function; 1.50A {Mycobacterium tuberculosis} SCOP: d.37.1.1 PDB: 1xkf_A

Probab=98.89  E-value=1.6e-09  Score=71.05  Aligned_cols=56  Identities=29%  Similarity=0.456  Sum_probs=51.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..+++++|.++       +.++.+++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+++
T Consensus         7 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~Givt~~dl~~   62 (133)
T 1y5h_A            7 MTTARDIMNAG-------VTCVGEHETLTAAAQYMREHDIGALPICG--DDDRLHGMLTDRDIVI   62 (133)
T ss_dssp             -CCHHHHSEET-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--GGGBEEEEEEHHHHHH
T ss_pred             hcCHHHHhcCC-------ceEeCCCCCHHHHHHHHHHhCCCeEEEEC--CCCeEEEEEeHHHHHH
Confidence            35899999875       88999999999999999999999999998  6899999999999984

>3oi8_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADN; 1.99A {Neisseria meningitidis serogroup B}

Probab=98.89  E-value=3.5e-09  Score=71.88  Aligned_cols=54  Identities=15%  Similarity=0.296  Sum_probs=49.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF  116 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~  116 (121)
                      ..++.++|++        ++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|++
T Consensus       102 ~~~v~~im~~--------~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd--~~g~~~Givt~~Dil  155 (156)
T 3oi8_A          102 QFHLKSILRP--------AVFVPEGKSLTALLKEFREQRNHMAIVID--EYGGTSGLVTFEDII  155 (156)
T ss_dssp             GCCHHHHCBC--------CCEEETTSBHHHHHHHHHHTTCCEEEEEC--TTSSEEEEEEHHHHC
T ss_pred             cccHHHHcCC--------CEEECCCCCHHHHHHHHHhcCCeEEEEEC--CCCCEEEEEEHHHhc
Confidence            4678899954        68999999999999999999999999998  789999999999985

>1o50_A CBS domain-containing predicted protein TM0935; CBS-domain PAIR fold, structural genomics, joint center for structural genomics, JCSG; 1.87A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.88  E-value=3.4e-09  Score=71.73  Aligned_cols=59  Identities=14%  Similarity=0.272  Sum_probs=53.1

Q ss_pred             CCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCE-EEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGA-LVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~-lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +...+++++|+++       ++++.+++++.+|++.|.+++++. +||+|  ++ +++|+||.+|+++++
T Consensus        13 ~~~~~v~~im~~~-------~~~v~~~~tl~ea~~~m~~~~~~~~~~Vvd--~~-~~vGivt~~dl~~~~   72 (157)
T 1o50_A           13 MKVKDVCKLISLK-------PTVVEEDTPIEEIVDRILEDPVTRTVYVAR--DN-KLVGMIPVMHLLKVS   72 (157)
T ss_dssp             CBHHHHTTSSCCC-------CEEECTTCBHHHHHHHHHHSTTCCEEEEEE--TT-EEEEEEEHHHHHHHH
T ss_pred             hccccHhhcccCC-------CceECCCCCHHHHHHHHHhCCCCccEEEEE--CC-EEEEEEEHHHHHHHH
Confidence            3456889999875       899999999999999999999999 99998  66 999999999999864

>3sl7_A CBS domain-containing protein CBSX2; CBS-PAIR protein, redox regulator, plant CBS domain, thiored chloroplast, membrane protein; 1.91A {Arabidopsis thaliana}

Probab=98.88  E-value=2.9e-09  Score=72.91  Aligned_cols=58  Identities=16%  Similarity=0.361  Sum_probs=51.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..+++++|.+..     +++++.+++++.+|++.|.+++++++||+|  ++++++|+||.+|+++
T Consensus         3 ~~~v~dim~~~~-----~~~~v~~~~~l~~a~~~m~~~~~~~~pVvd--~~~~~~Givt~~dl~~   60 (180)
T 3sl7_A            3 GYTVGDFMTPRQ-----NLHVVKPSTSVDDALELLVEKKVTGLPVID--DNWTLVGVVSDYDLLA   60 (180)
T ss_dssp             CCBHHHHSEEGG-----GCCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHTC
T ss_pred             ceeHHHhcCCCC-----CceeeCCCCcHHHHHHHHHHcCCCeEEEEC--CCCeEEEEEEHHHHHh
Confidence            367999999831     188999999999999999999999999998  7899999999999974

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.87  E-value=3.8e-09  Score=77.97  Aligned_cols=59  Identities=24%  Similarity=0.447  Sum_probs=54.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus       226 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~~g~~~Giit~~Dil~~l~  284 (296)
T 3ddj_A          226 GKVVKDVMVTN-------LVTIDELASVNRAAAEMIVKRIGSLLILN--KDNTIRGIITERDLLIALH  284 (296)
T ss_dssp             TCBHHHHSBCC-------CCBCCTTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             CcCHHHHhCCC-------CeEECCCCcHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEcHHHHHHHHH
Confidence            45788888875       89999999999999999999999999998  7899999999999999864

>4gqw_A CBS domain-containing protein CBSX1, chloroplasti; thioredoxin, plant, protein binding; 2.20A {Arabidopsis thaliana}

Probab=98.87  E-value=2.7e-09  Score=71.01  Aligned_cols=58  Identities=14%  Similarity=0.314  Sum_probs=51.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ..+++++|.+..     +++++.+++++.+|++.|.+++++++||+|  ++++++|+||.+|+++
T Consensus         4 ~~~v~~im~~~~-----~~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~G~vt~~dl~~   61 (152)
T 4gqw_A            4 VYTVGEFMTKKE-----DLHVVKPTTTVDEALELLVENRITGFPVID--EDWKLVGLVSDYDLLA   61 (152)
T ss_dssp             CSBGGGTSEEST-----TCCCBCTTSBHHHHHHHHHHTTCSEEEEEC--TTCBEEEEEEHHHHTT
T ss_pred             eEEhhhccCCCC-----CCeEECCCCcHHHHHHHHHHcCCceEEEEe--CCCeEEEEEEHHHHHH
Confidence            467899998831     288999999999999999999999999998  7899999999999974

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.86  E-value=4.5e-09  Score=78.50  Aligned_cols=59  Identities=22%  Similarity=0.292  Sum_probs=54.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       ++++++++++.+|++.|.++++..+||+|  ++|+++|+||.+|++..+.
T Consensus       200 ~~~v~~im~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVVd--~~g~lvGiIT~~Dil~~i~  258 (286)
T 2oux_A          200 DTLIADILNER-------VISVHVGDDQEDVAQTIRDYDFLAVPVTD--YDDHLLGIVTVDDIIDVID  258 (286)
T ss_dssp             TSBHHHHSBSC-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHcCCC-------CeeecCCCCHHHHHHHHHHcCCcEEEEEc--CCCeEEEEEEHHHHHHHHH
Confidence            56799999875       88999999999999999999999999998  7899999999999998753

>2emq_A Hypothetical conserved protein; CBS domains, NPPSFA, national project on protein structural functional analyses; 2.50A {Geobacillus kaustophilus}

Probab=98.86  E-value=3.7e-09  Score=71.14  Aligned_cols=57  Identities=21%  Similarity=0.367  Sum_probs=51.2

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       +.++.+++++.+|++.|.++++  +||+|  ++|+++|+||.+|+++++.
T Consensus        82 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~--l~Vvd--~~g~~~Giit~~dil~~~~  138 (157)
T 2emq_A           82 TMKVEEVMNRN-------IPRLRLDDSLMKAVGLIVNHPF--VCVEN--DDGYFAGIFTRREVLKQLN  138 (157)
T ss_dssp             TCBGGGTCBCC-------CCEEETTSBHHHHHHHHHHSSE--EEEEC--SSSSEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHhCCC-------CceecCCCcHHHHHHHHhhCCE--EEEEc--CCCeEEEEEEHHHHHHHHH
Confidence            46788888875       8999999999999999999988  99998  7899999999999998764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.85  E-value=4.1e-09  Score=72.61  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=52.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       ++++.+++++.+|+++|.+++++.+||++   +|+++|+||.+|+++++.
T Consensus       107 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd---~g~~vGiit~~dll~~l~  164 (185)
T 2j9l_A          107 TLKLRNILDLS-------PFTVTDLTPMEIVVDIFRKLGLRQCLVTH---NGRLLGIITKKDVLKHIA  164 (185)
T ss_dssp             CEECGGGEESS-------CCEEETTSBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             CccHHHhhCcC-------CeEeCCCCCHHHHHHHHHhCCCcEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            45788999875       89999999999999999999999999997   799999999999998764

>1yav_A Hypothetical protein BSU14130; cystathionine beta synthase (CBS) domain, structural genomics, protein structure initiative, PSI; 2.10A {Bacillus subtilis} SCOP: d.37.1.1

Probab=98.85  E-value=5.5e-09  Score=70.73  Aligned_cols=58  Identities=14%  Similarity=0.303  Sum_probs=52.2

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.+.       +.++.+++++.+|+++|.++++  +||+|  ++|+++|+||.+|+++++.
T Consensus        84 ~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~--lpVvd--~~g~~vGiit~~dil~~~~  141 (159)
T 1yav_A           84 DQITVEEVMLTD-------IPRLHINDPIMKGFGMVINNGF--VCVEN--DEQVFEGIFTRRVVLKELN  141 (159)
T ss_dssp             TTSBHHHHSBCS-------CCEEETTSBHHHHHHHTTTCSE--EEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             ccCCHHHhcCCC-------CceEcCCCCHHHHHHHHHhCCE--EEEEe--CCCeEEEEEEHHHHHHHHH
Confidence            357899999975       8999999999999999999987  99998  7899999999999998764

>1pvm_A Conserved hypothetical protein TA0289; structural genomics, CBS domain, PSI, protein structure initiative; 1.50A {Thermoplasma acidophilum dsm 1728} SCOP: d.37.1.1 g.41.13.1 PDB: 2qh1_A

Probab=98.84  E-value=2.8e-09  Score=74.08  Aligned_cols=58  Identities=17%  Similarity=0.223  Sum_probs=52.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|.++       +.++.+++++.+|+++|.+++.+.+||+|  ++|+++|+||.+|+++++
T Consensus        74 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~~~Givt~~dll~~~  131 (184)
T 1pvm_A           74 EVPIRLVMRKP-------IPKVKSDYDVKDVAAYLSENGLERCAVVD--DPGRVVGIVTLTDLSRYL  131 (184)
T ss_dssp             GSBGGGTSBSS-------CCEEETTCBHHHHHHHHHHHTCSEEEEEC--TTCCEEEEEEHHHHTTTS
T ss_pred             cCCHHHHhCCC-------CcEECCCCCHHHHHHHHHHcCCcEEEEEc--CCCeEEEEEEHHHHHHHH
Confidence            46788999875       88999999999999999999999999998  679999999999998764

>3ocm_A Putative membrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: ADP; 1.80A {Bordetella parapertussis}

Probab=98.84  E-value=5.2e-09  Score=72.70  Aligned_cols=49  Identities=12%  Similarity=0.217  Sum_probs=46.1

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +++++.+++++.+|+++|.+++++.+||+|  ++|+++||||.+|+++.+.
T Consensus       108 ~~~~v~~~~~l~~al~~m~~~~~~~~~Vvd--e~g~lvGiIT~~Dil~~l~  156 (173)
T 3ocm_A          108 DPIIVHESIGILRLMDTLKRSRGQLVLVAD--EFGAIEGLVTPIDVFEAIA  156 (173)
T ss_dssp             CCCEECGGGCHHHHHHHHHHSTTCCEEEEC--TTCCEEEEECHHHHHHHHH
T ss_pred             CCeEECCCCcHHHHHHHHHHcCCeEEEEEe--CCCCEEEEEeHHHHHHHHh
Confidence            378999999999999999999999999998  7899999999999998864

>2nyc_A Nuclear protein SNF4; bateman2 domain, AMP kinase, protein binding; 1.90A {Saccharomyces cerevisiae} SCOP: d.37.1.1 PDB: 2nye_A

Probab=98.84  E-value=4.3e-09  Score=69.51  Aligned_cols=58  Identities=17%  Similarity=0.301  Sum_probs=50.7

Q ss_pred             cccHHH---HhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISD---ILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~d---im~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++++   +|.++       ++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++
T Consensus         7 ~~~v~~~~~~~~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~Givt~~dl~~~~   67 (144)
T 2nyc_A            7 KIPIGDLNIITQDN-------MKSCQMTTPVIDVIQMLTQGRVSSVPIID--ENGYLINVYEAYDVLGLI   67 (144)
T ss_dssp             GSBGGGSSCCBCSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHH
T ss_pred             hcchhhcCCCCCCC-------ceEECCCCcHHHHHHHHHHcCcceeeEEc--CCCcEEEEEcHHHHHHHh
Confidence            345667   56543       88999999999999999999999999998  789999999999998865

>4fry_A Putative signal-transduction protein with CBS DOM; CBS domain,ssgcid, structural genomics, niaid; HET: NAD AMP; 2.10A {Burkholderia ambifaria}

Probab=98.83  E-value=1.3e-08  Score=68.64  Aligned_cols=62  Identities=42%  Similarity=0.623  Sum_probs=52.1

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+++|+|.+++.. .+++.++.+++++.+|++.|.+++++++||+   ++|+++|+||.+|+++++
T Consensus         7 ~~v~dim~~~~~~-~~~~~~v~~~~~~~~a~~~~~~~~~~~~~V~---~~~~~~Givt~~dl~~~~   68 (157)
T 4fry_A            7 TTVAQILKAKPDS-GRTIYTVTKNDFVYDAIKLMAEKGIGALLVV---DGDDIAGIVTERDYARKV   68 (157)
T ss_dssp             CBHHHHHHHSTTT-TCCCCEEETTSBHHHHHHHHHHHTCSEEEEE---SSSSEEEEEEHHHHHHHS
T ss_pred             HHHHHHHhccccc-CCCCeEECCCCcHHHHHHHHHHcCCCEEEEe---eCCEEEEEEEHHHHHHHH
Confidence            5799999975200 0027899999999999999999999999995   489999999999999875

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.82  E-value=3.2e-09  Score=78.72  Aligned_cols=59  Identities=22%  Similarity=0.389  Sum_probs=51.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|.++       ++++++++++.+|++.|.++++..+||+|  ++|+++|+||..|+++.+.
T Consensus       198 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~lvGivT~~Dil~~i~  256 (278)
T 2yvy_A          198 RTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVVD--EEGRLVGIVTVDDVLDVLE  256 (278)
T ss_dssp             TCBSTTTSBSS-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTSBEEEEEEHHHHHHHC-
T ss_pred             CCcHHHHhCCC-------CeEEeCCCCHHHHHHHHHhcCCCEEEEEe--CCCeEEEEEEHHHHHHHHH
Confidence            34566777654       89999999999999999999999999998  7899999999999998753

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.80  E-value=1.8e-08  Score=75.48  Aligned_cols=65  Identities=17%  Similarity=0.253  Sum_probs=54.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+..... ++++++++++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus       250 ~~~v~~~m~~~~~~~-~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~g~l~Giit~~dil~~~~  314 (334)
T 2qrd_G          250 DLSVGEALLKRPANF-DGVHTCRATDRLDGIFDAIKHSRVHRLFVVD--ENLKLEGILSLADILNYII  314 (334)
T ss_dssp             GSBHHHHHTTCCTTC-CCCCEECTTCBHHHHHHHHHHSCCCEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             cCcHHHHHhcccccC-CCCEEECCCCcHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEeHHHHHHHHH
Confidence            457889998510000 0288999999999999999999999999998  7899999999999998864

>2pfi_A Chloride channel protein CLC-Ka; cystathionine beta synthetase (CBS) domains containing protein, transport protein; 1.60A {Homo sapiens}

Probab=98.78  E-value=2.3e-08  Score=67.44  Aligned_cols=63  Identities=19%  Similarity=0.155  Sum_probs=52.9

Q ss_pred             cccHHHHhhhcCCCCCCc-eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.....  ..+ +.++++++++.+|+++|.+++++++||+|   +|+++|+||.+|+++++.
T Consensus        83 ~~~v~~~m~~~~~--~~~~~~~v~~~~~l~~~~~~m~~~~~~~lpVvd---~g~l~Giit~~dil~~~~  146 (164)
T 2pfi_A           83 QQCLQDILARGCP--TEPVTLTLFSETTLHQAQNLFKLLNLQSLFVTS---RGRAVGCVSWVEMKKAIS  146 (164)
T ss_dssp             CCBHHHHHHTTCC--CBCCCCCEETTCBHHHHHHHHHHTTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             cchhhhhhccccc--ccCCceEECCCCcHHHHHHHHHHhCCCEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            3579999987411  001 57899999999999999999999999997   689999999999998764

>2j9l_A Chloride channel protein 5; ION channel, ION transport, voltage-gated; HET: ATP; 2.30A {Homo sapiens} SCOP: d.37.1.1 PDB: 2ja3_A*

Probab=98.77  E-value=1.4e-08  Score=69.82  Aligned_cols=62  Identities=19%  Similarity=0.306  Sum_probs=53.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEE--cCCCcHHHHHHHHHhcCCCEEEEE--eCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWC--TTDDTVYDAVKSMTQHNVGALVVV--KPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v--~~~~~l~ea~~~m~~~~~~~lpVv--d~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.+...   .|++++  .+++++.+|++.|.+++++.+||+  |  ++|+++|+||.+|+++.+
T Consensus        10 ~~~v~dim~~~~~---~~~~~v~~~~~~~~~~a~~~~~~~~~~~~pVv~~d--~~~~lvGiit~~dl~~~~   75 (185)
T 2j9l_A           10 KTLAMDVMKPRRN---DPLLTVLTQDSMTVEDVETIISETTYSGFPVVVSR--ESQRLVGFVLRRDLIISI   75 (185)
T ss_dssp             CCBHHHHSBSCTT---SCCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCT--TTCBEEEEEEHHHHHHHH
T ss_pred             cCcHHHHhccccc---CceEEEecCCCccHHHHHHHHHhcCCCceeEEEEC--CCCeEEEEEEHHHHHHHH
Confidence            5789999987511   015677  999999999999999999999999  6  789999999999998874

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.74  E-value=4.9e-08  Score=73.06  Aligned_cols=65  Identities=23%  Similarity=0.337  Sum_probs=55.2

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|... ..|+.+++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus       258 ~~~v~~~~~~~-~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vvd--~~g~l~Giit~~Dil~~~~  322 (330)
T 2v8q_E          258 DVSVTKALQHR-SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD--EHDVVKGIVSLSDILQALV  322 (330)
T ss_dssp             SSBHHHHGGGC-CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             cCcHHHHHhcc-ccccCCCeEECCCCcHHHHHHHHHHCCCcEEEEEc--CCCcEEEEEeHHHHHHHHH
Confidence            46899999631 11223489999999999999999999999999998  7899999999999999875

>2d4z_A Chloride channel protein; CLC chloride channel cytoplasmic domain, CBS domains, ION CH regulatory subunit, transport protein; 3.10A {Torpedo marmorata} SCOP: d.37.1.1

Probab=98.73  E-value=1.4e-08  Score=75.07  Aligned_cols=49  Identities=10%  Similarity=0.050  Sum_probs=45.9

Q ss_pred             CceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        69 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +.++++.+++++.+|..+|...+++.+||++   .|+|+||||++|+++++.
T Consensus       197 ~sP~tv~~~tsL~~v~~LF~~lglr~l~V~~---~GrLVGIVTrkDl~kai~  245 (250)
T 2d4z_A          197 QSPFQLVEGTSLQKTHTLFSLLGLDRAYVTS---MGKLVGVVALAEIQAAIE  245 (250)
T ss_dssp             CCSCCBCTTCBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             CCCeEECCCCcHHHHHHHHHHhCCeEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            3489999999999999999999999999997   799999999999999875

>3kh5_A Protein MJ1225; AMPK, AMP, ADP, ATP, CBS domain, archaea, unknown function; HET: ADP AMP; 2.10A {Methanocaldococcus jannaschii} PDB: 3lfz_A*

Probab=98.72  E-value=1.8e-08  Score=73.15  Aligned_cols=58  Identities=19%  Similarity=0.434  Sum_probs=53.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|.++       +.++.+++++.+|++.|.+++++.+||+|  ++|+++|++|.+|+++.+
T Consensus        83 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~~~~~~~~~~~Vvd--~~~~~~Givt~~dl~~~~  140 (280)
T 3kh5_A           83 NEPVREIMEEN-------VITLKENADIDEAIETFLTKNVGGAPIVN--DENQLISLITERDVIRAL  140 (280)
T ss_dssp             TSBGGGTSBCS-------CCCEETTCBHHHHHHHHHHTTCSEEEEEC--TTCBEEEEEEHHHHHHHH
T ss_pred             hhhHHHhcCCC-------CEEECCCCCHHHHHHHHHhCCCCEEEEEc--CCCEEEEEEEHHHHHHHH
Confidence            45788999875       88999999999999999999999999998  789999999999999875

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.71  E-value=1.7e-08  Score=81.20  Aligned_cols=71  Identities=25%  Similarity=0.284  Sum_probs=60.9

Q ss_pred             chhhhhhcCC-----------CcccHHHHhhhcCCCCCCceEEEcCC-CcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEE
Q 033339           42 SSARMEEHGF-----------ESTTISDILKAKGKGADGSWLWCTTD-DTVYDAVKSMTQHNVGALVVVKPGEQKSVAGI  109 (121)
Q Consensus        42 ~~~~~~~~g~-----------~~~~v~dim~~~~~~~~~~~~~v~~~-~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGi  109 (121)
                      .+.|+..++|           ...+|+++|+++       ++++.++ +++.+|+++|.+++++.+||+|+ ++++++|+
T Consensus       361 ~~~~l~~rg~~~~~~~~~~~l~~~~V~diM~~~-------~vtv~~~~~tv~ea~~~m~~~~~~~lpVvd~-~~g~lvGi  432 (527)
T 3pc3_A          361 SDNWMEARNFKEPVNEHGHWWWSLAIAELELPA-------PPVILKSDATVGEAIALMKKHRVDQLPVVDQ-DDGSVLGV  432 (527)
T ss_dssp             SHHHHHHTTSSCCCCTTCCTTTTSBGGGGCCCC-------CSCCEETTCBHHHHHHHHHHHTCSEEEEECT-TTCCEEEE
T ss_pred             cHHHHHhcCCccccccccccccCCcHHHhCcCC-------CeEEcCCCCcHHHHHHHHHHcCCCeEEEEEC-CCCEEEEE
Confidence            4678888777           146899999875       8899999 99999999999999999999962 26899999


Q ss_pred             EeHHHHHHHhh
Q 033339          110 ITERGIFKACH  120 (121)
Q Consensus       110 Vt~~Di~~~~~  120 (121)
                      ||.+|+++++.
T Consensus       433 Vt~~Dll~~l~  443 (527)
T 3pc3_A          433 VGQETLITQIV  443 (527)
T ss_dssp             EEHHHHHHHHH
T ss_pred             EEHHHHHHHHH
Confidence            99999998753

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.69  E-value=2.2e-08  Score=79.90  Aligned_cols=59  Identities=22%  Similarity=0.389  Sum_probs=53.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|+++       ++++++++++.+|++.|.+++...+||+|  ++|+++|+||.+|+++.+.
T Consensus       218 ~~~v~dim~~~-------~~~v~~~~~l~ea~~~m~~~~~~~lpVVD--e~g~lvGiIT~~Dil~~i~  276 (473)
T 2zy9_A          218 RTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVVD--EEGRLVGIVTVDDVLDVLE  276 (473)
T ss_dssp             TSBGGGTSBSS-------CCCEESSSBHHHHHHHHHHHTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHhCCC-------CeEEeCCCcHHHHHHHHHhcCCcEEEEEc--CCCEEEEEEehHhhHHHHH
Confidence            45777888654       89999999999999999999999999999  8899999999999998753

>3ddj_A CBS domain-containing protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.80A {Sulfolobus solfataricus} SCOP: d.37.1.1 d.37.1.1

Probab=98.67  E-value=4e-08  Score=72.41  Aligned_cols=59  Identities=20%  Similarity=0.198  Sum_probs=53.6

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       +.++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++.+.
T Consensus       155 ~~~v~~~m~~~-------~~~v~~~~~l~~~~~~m~~~~~~~~~Vvd--~~~~~~Givt~~dl~~~~~  213 (296)
T 3ddj_A          155 IFPVKVFMSTK-------VQTIYKEVRLDQAVKLMLRRGFRRLPVID--DDNKVVGIVTVVNAIKQLA  213 (296)
T ss_dssp             CCBHHHHSBCS-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             cccHHHhhcCC-------CeEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCEEEEEEEHHHHHHHHH
Confidence            45889999865       88999999999999999999999999998  7899999999999988753

>3t4n_C Nuclear protein SNF4; CBS domain, nucleotide binding, cytosol, protein binding; HET: ADP; 2.30A {Saccharomyces cerevisiae} PDB: 3tdh_C* 3te5_C* 2qlv_C

Probab=98.66  E-value=2.7e-08  Score=74.20  Aligned_cols=59  Identities=15%  Similarity=0.293  Sum_probs=52.2

Q ss_pred             cccHHHH---hhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDI---LKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~di---m~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++   |.++       ++++.+++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus       186 ~~~v~~~~~~m~~~-------~~~v~~~~~~~~~~~~m~~~~~~~~pVvd--~~~~~~Giit~~dl~~~~~  247 (323)
T 3t4n_C          186 KIPIGDLNIITQDN-------MKSCQMTTPVIDVIQMLTQGRVSSVPIID--ENGYLINVYEAYDVLGLIK  247 (323)
T ss_dssp             CSBGGGTTCSBCTT-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEETTHHHHHHH
T ss_pred             hCcHHHcCCCCCCC-------cEEECCCCcHHHHHHHHHHcCCCEEEEEC--CCCeEEEEEeHHHHHHHHh
Confidence            3467787   6554       89999999999999999999999999998  7899999999999998753

>3kxr_A Magnesium transporter, putative; cystathionine beta-synthase, Mg2+ transporter, structural GE PSI-2, protein structure initiative; 2.41A {Shewanella oneidensis mr-1}

Probab=98.65  E-value=5e-08  Score=69.62  Aligned_cols=60  Identities=20%  Similarity=0.249  Sum_probs=53.5

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc---CCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH---NVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~---~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +|...+++++|++.       ++++.++.|+.+|++.|.++   ++..+||+|  ++++++|+||.+|++.+
T Consensus        50 ~~~~~~v~~iM~~~-------~~~v~~~~tv~eal~~~~~~~~~~~~~~~Vvd--~~~~lvGivt~~dll~~  112 (205)
T 3kxr_A           50 QYSENEIGRYTDHQ-------MLVLSDKATVAQAQRFFRRIELDCNDNLFIVD--EADKYLGTVRRYDIFKH  112 (205)
T ss_dssp             HSCTTCGGGGCBCC-------CCEEETTCBHHHHHHHHHHCCCTTCCEEEEEC--TTCBEEEEEEHHHHTTS
T ss_pred             CCCcchHHhhccCc-------eEEECCCCcHHHHHHHHHhhCccCeeEEEEEc--CCCeEEEEEEHHHHHhC
Confidence            34567899999876       89999999999999999987   899999998  78999999999998753

>2oux_A Magnesium transporter; 10001B, structural genomics, PSI-2, P structure initiative, nysgxrc; 2.16A {Enterococcus faecalis} SCOP: a.118.26.1 d.37.1.1

Probab=98.62  E-value=5.9e-08  Score=72.40  Aligned_cols=60  Identities=18%  Similarity=0.354  Sum_probs=53.3

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc-----CCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .+...+++++|++.       ++++.++.++.+|++.|.++     +++.+||+|  ++|+++|+||.+|++.+
T Consensus       133 ~~~~~~v~~iM~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~pVvd--~~~~lvGivt~~dll~~  197 (286)
T 2oux_A          133 HYEDETAGAIMTTE-------FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD--QENHLVGVISLRDLIVN  197 (286)
T ss_dssp             TSCTTBHHHHCBSC-------CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC--TTCBEEEEEEHHHHTTS
T ss_pred             cCChHHHHHhCCCC-------ceEECCCCcHHHHHHHHHHcccCccceeEEEEEc--CCCeEEEEEEHHHHHcC
Confidence            34567899999875       89999999999999999998     888899998  78999999999998753

>2qrd_G Protein C1556.08C; AMPK, ADP, ATP-binding, kinase, nucleotide-binding, serine/T protein kinase, transferase, CBS domain; HET: ADP ATP; 2.41A {Schizosaccharomyces pombe} PDB: 2qrc_G* 2qr1_G* 2qre_G* 2oox_G* 2ooy_G*

Probab=98.58  E-value=7.3e-08  Score=72.13  Aligned_cols=60  Identities=17%  Similarity=0.150  Sum_probs=53.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ..+++|+|.+..     +++++++++++.+|++.|.+++++.+||++  ++ ++++|+||.+|++..+
T Consensus        21 ~~~v~dim~~~~-----~vv~v~~~~tv~~a~~~~~~~~~~~~pV~d--~~~~~~vGiv~~~Dl~~~~   81 (334)
T 2qrd_G           21 SRTSYDVLPTSF-----RLIVFDVTLFVKTSLSLLTLNNIVSAPLWD--SEANKFAGLLTMADFVNVI   81 (334)
T ss_dssp             HSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSCEEEEE--TTTTEEEEEECHHHHHHHH
T ss_pred             cCchhhhCCCCC-----CEEEEcCCCCHHHHHHHHHHcCCeEEEEEe--CCCCeEEEEEEHHHHHHHH
Confidence            368999998753     378999999999999999999999999998  54 8999999999998764

>2v8q_E 5'-AMP-activated protein kinase subunit gamma-1; phosphorylation, nucleotide-binding, serine/threonine-protei kinase, magnesium, CBS domain; HET: AMP; 2.10A {Rattus norvegicus} SCOP: d.37.1.1 d.37.1.1 PDB: 2v92_E* 2v9j_E* 2y8l_E* 2y8q_E* 2y94_E* 2ya3_E*

Probab=98.57  E-value=1.3e-07  Score=70.75  Aligned_cols=60  Identities=17%  Similarity=0.180  Sum_probs=52.2

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC-CeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ-KSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~-~~lvGiVt~~Di~~~~  119 (121)
                      ..+++|+|.+..     +++++++++++.+|++.|.+++++.+||++  ++ ++++|+||.+|++..+
T Consensus        34 ~~~v~dim~p~~-----~v~~v~~~~~v~~a~~~~~~~~~~~~pV~d--~~~~~~vGivt~~Dll~~l   94 (330)
T 2v8q_E           34 SHRCYDLIPTSS-----KLVVFDTSLQVKKAFFALVTNGVRAAPLWD--SKKQSFVGMLTITDFINIL   94 (330)
T ss_dssp             HSBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSEEEEEE--TTTTEEEEEEEHHHHHHHH
T ss_pred             cCcHhhhccCCC-----cEEEEeCCCcHHHHHHHHHHcCCcEEEEEe--CCCCeEEEEEEHHHHHHHH
Confidence            458999994332     289999999999999999999999999998  55 7999999999998764

>1vr9_A CBS domain protein/ACT domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE; 1.70A {Thermotoga maritima} SCOP: d.37.1.1

Probab=98.57  E-value=3.9e-08  Score=70.20  Aligned_cols=56  Identities=11%  Similarity=0.254  Sum_probs=50.4

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..+.++|.++       ++++.+++++.+|+++|.+++++++||+|  ++++++|+||.+|+.+.
T Consensus        13 ~~~~~~~~~~-------~~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~l~Givt~~dl~~~   68 (213)
T 1vr9_A           13 MKVKKWVTQD-------FPMVEESATVRECLHRMRQYQTNECIVKD--REGHFRGVVNKEDLLDL   68 (213)
T ss_dssp             CBGGGGCBSC-------SCEEETTCBHHHHHHHHHHTTSSEEEEEC--TTSBEEEEEEGGGGTTS
T ss_pred             cCHHHhhcCC-------CeEECCCCcHHHHHHHHHHCCCCEEEEEc--CCCEEEEEEEHHHHHhh
Confidence            4577888876       89999999999999999999999999998  78999999999998754

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.56  E-value=1.8e-08  Score=82.81  Aligned_cols=55  Identities=9%  Similarity=0.009  Sum_probs=47.9

Q ss_pred             HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ++++|+++       ++++++++++.+|++.|.+++++.+||++   +|+++||||.+|+++++.
T Consensus       570 v~~iMt~~-------pitV~~~~~l~ea~~~M~~~~i~~lpVve---~G~lvGIVT~~Dll~~~~  624 (632)
T 3org_A          570 LVVPCDVS-------PIVVTSYSLVRQLHFLFVMLMPSMIYVTE---RGKLVGIVEREDVAYGYS  624 (632)
T ss_dssp             -CCSCCCC-------CCEEETTCBHHHHHHHHHHTCCSEEEEEE---TTEEEEEEEGGGTEECCC
T ss_pred             cchhhcCC-------CceecCCCcHHHHHHHHHhcCCCEEEEEE---CCEEEEEEehhhHHHHHh
Confidence            55566654       88999999999999999999999999995   899999999999987643

>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon merolae}

Probab=98.53  E-value=3.8e-08  Score=80.95  Aligned_cols=61  Identities=13%  Similarity=0.069  Sum_probs=53.7

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHH-hcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMT-QHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~-~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++|+|++.+     ++.++++++++.|+.+.|. +++.+.+||+|  ++++++|+||++|+.+.+
T Consensus       451 ~~~~V~diM~p~~-----~v~~v~~~~t~~e~~~~~~~~~~~~~~PVvd--~~~~lvGiVt~~DL~~~l  512 (632)
T 3org_A          451 PEMTAREIMHPIE-----GEPHLFPDSEPQHIKGILEKFPNRLVFPVID--ANGYLLGAISRKEIVDRL  512 (632)
T ss_dssp             TTSBHHHHCBCTT-----TSCCBCSSSCHHHHHHHHHHSTTCCEECBBC--TTCBBCCEESHHHHTTTT
T ss_pred             ccCcHHHHhhcCC-----CceEecCCCcHHHHHHHHHhcCCcceEEEEe--cCCeEEEEEEHHHHHHHH
Confidence            3578999999321     2889999999999999999 89999999998  789999999999998764

>2yzq_A Putative uncharacterized protein PH1780; sheet/helix/sheet/sheet/helix, structural genomics, unknown function, NPPSFA; HET: SAM; 1.63A {Pyrococcus horikoshii} SCOP: d.37.1.1 d.37.1.1

Probab=98.53  E-value=1e-07  Score=69.45  Aligned_cols=58  Identities=22%  Similarity=0.264  Sum_probs=48.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH-Hh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK-AC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~-~~  119 (121)
                      ..+++++|.+.       ++++.+++++.+|++.|.+++.+.+||+|  ++|+++|+||.+|+++ .+
T Consensus        59 ~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~~~Vvd--~~~~~~Giit~~di~~~~~  117 (282)
T 2yzq_A           59 EEQLAMLVKRD-------VPVVKENDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRRYF  117 (282)
T ss_dssp             -----CCCBSC-------CCEEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHTT
T ss_pred             cCCHHHHcCCC-------CcEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCEEEEEEEHHHHHHHHH
Confidence            45788888875       78999999999999999999999999998  6789999999999998 54

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.51  E-value=2e-07  Score=75.17  Aligned_cols=61  Identities=23%  Similarity=0.306  Sum_probs=54.9

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...+++++|++.      ++++++++.++.+++++|.+++++.+||+|  ++|+++|+||.+|+++.+.
T Consensus       173 ~~~~V~~vM~~~------~~vtv~~~~~l~eal~~m~~~~i~~lpVVD--e~g~l~GiIT~~Dil~~~~  233 (511)
T 3usb_A          173 YSIKISDVMTKE------QLITAPVGTTLSEAEKILQKYKIEKLPLVD--NNGVLQGLITIKDIEKVIE  233 (511)
T ss_dssp             SSSBHHHHCCCC------CCCCEETTCCHHHHHHHHHHHTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             CCCcHHHhcccC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEe--CCCCEeeeccHHHHHHhhh
Confidence            356899999972      289999999999999999999999999999  8999999999999998753

>2yvy_A MGTE, Mg2+ transporter MGTE; membrane protein, transport protein; 2.30A {Thermus thermophilus} PDB: 2yvz_A

Probab=98.49  E-value=2.1e-07  Score=68.84  Aligned_cols=59  Identities=15%  Similarity=0.329  Sum_probs=52.3

Q ss_pred             CCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc-----CCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +...+++++|++.       ++++.++.++.+|++.|.++     ++..+||+|  ++++++|+||.+|++.+
T Consensus       132 ~~~~~v~~iM~~~-------~~~v~~~~tv~ea~~~~~~~~~~~~~~~~~~Vvd--~~~~lvGivt~~dll~~  195 (278)
T 2yvy_A          132 YEEDEAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD--EKGRLKGVLSLRDLIVA  195 (278)
T ss_dssp             SCTTBGGGTCBSC-------CCEECTTSBHHHHHHHHHHHTTTCSCSSEEEEEC--TTCBEEEEEEHHHHHHS
T ss_pred             CCcchHHhhcCCC-------ceEECCCCcHHHHHHHHHHccCCccceeEEEEEC--CCCCEEEEEEHHHHhcC
Confidence            3466788999875       89999999999999999987     789999998  78999999999999853

>3pc3_A CG1753, isoform A; CBS, synthase, PLP, heme, aminoacrylate, lyase; HET: HEM P1T; 1.55A {Drosophila melanogaster} PDB: 3pc2_A* 3pc4_A*

Probab=98.45  E-value=2.2e-07  Score=74.77  Aligned_cols=57  Identities=5%  Similarity=0.092  Sum_probs=50.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC----CeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ----KSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~----~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|+++       ++++.+++++.+++++|.++++  +||+|  ++    |+++||||.+|+++++.
T Consensus       450 ~~~V~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~--~pVVd--~~~~~~g~lvGIVT~~Dll~~l~  510 (527)
T 3pc3_A          450 SDPAIKALNKR-------VIRLNESEILGKLARVLEVDPS--VLILG--KNPAGKVELKALATKLDVTTFIA  510 (527)
T ss_dssp             TSBGGGGEETT-------CCEEETTSBHHHHHHHHTTCSE--EEEEE--ECSSSCEEEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHhcCC-------CeEECCCCcHHHHHHHHhhCCE--EEEEe--CCcccCCeEEEEEEHHHHHHHHH
Confidence            56789999875       8999999999999999987775  79998  53    89999999999999875

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=98.39  E-value=3.5e-07  Score=72.81  Aligned_cols=60  Identities=18%  Similarity=0.303  Sum_probs=52.1

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|++.      +++++++++++.++++.|.+++++.+||+|  ++++++|+||.+|+++.+.
T Consensus       151 ~~~v~~im~~~------~~~~v~~~~~l~~a~~~m~~~~~~~lpVVd--~~g~lvGivt~~Dil~~~~  210 (491)
T 1zfj_A          151 NAPISEHMTSE------HLVTAAVGTDLETAERILHEHRIEKLPLVD--NSGRLSGLITIKDIEKVIE  210 (491)
T ss_dssp             SSBTTTSCCCS------CCCCEETTCCHHHHHHHHHHTTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             CCcHHHHcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEEHHHHHHHHh
Confidence            34566677651      278999999999999999999999999999  8899999999999998764

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=98.31  E-value=7.4e-08  Score=77.37  Aligned_cols=60  Identities=15%  Similarity=0.249  Sum_probs=0.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|++..     +++++++++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++.+
T Consensus       160 ~~~V~diM~~~~-----~~~tv~~~~sl~ea~~~m~~~~i~~lpVVD--e~g~lvGiIT~~Dil~~~  219 (503)
T 1me8_A          160 ETKVSDMMTPFS-----KLVTAHQDTKLSEANKIIWEKKLNALPIID--DDQHLRYIVFRKDYDRSQ  219 (503)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             cCcHHHHhCCCC-----CCEEEcCCCcHHHHHHHHHHcCCCEEEEEc--CCCeEEEEEEecHHHHhh
Confidence            356788888632     278999999999999999999999999999  789999999999999875

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=98.29  E-value=1.3e-06  Score=70.35  Aligned_cols=82  Identities=24%  Similarity=0.495  Sum_probs=62.1

Q ss_pred             ceeeeeccccchhhh-----hhcCC-----------CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEE
Q 033339           32 PVVSSRFESVSSARM-----EEHGF-----------ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGAL   95 (121)
Q Consensus        32 ~~~~~~~~~~~~~~~-----~~~g~-----------~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~l   95 (121)
                      |.+.+.++++++..|     +..|+           ....++++|+.. ..|..+++++++++++.+++++|.+++++.+
T Consensus        69 Pivsa~MdtvTe~~lAia~a~~GgiGvIh~~~~~~~q~~~V~~V~~~~-~~m~~d~v~l~~~~tv~ea~~~m~~~~~s~~  147 (511)
T 3usb_A           69 PLISAGMDTVTEADMAIAMARQGGLGIIHKNMSIEQQAEQVDKVKRSE-SGVISDPFFLTPEHQVYDAEHLMGKYRISGV  147 (511)
T ss_dssp             SEEECSCTTTCSHHHHHHHHHHTCEEEECSSSCHHHHHHHHHHHHTSS-SCSSSSCCCBCTTSBHHHHHHHHHHHCCSEE
T ss_pred             CccccCchhhcHHHHHHHHHhcCCceeecccCCHHHHHHHHHHhhccc-cccccCCEEECCCCCHHHHHHHHHHcCCcEE
Confidence            556677777766554     22222           112366777653 2355668999999999999999999999999


Q ss_pred             EEEeCCC--CCeeEEEEeHHHHH
Q 033339           96 VVVKPGE--QKSVAGIITERGIF  116 (121)
Q Consensus        96 pVvd~~~--~~~lvGiVt~~Di~  116 (121)
                      ||++  +  +++++|+||.+|+.
T Consensus       148 pVvd--~g~~~~lvGiVt~rDl~  168 (511)
T 3usb_A          148 PVVN--NLDERKLVGIITNRDMR  168 (511)
T ss_dssp             EEES--CTTTCBEEEEEEHHHHT
T ss_pred             EEEe--cCCCCEEEEEEEehHhh
Confidence            9998  6  78999999999986

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.26  E-value=1.1e-07  Score=76.96  Aligned_cols=57  Identities=14%  Similarity=0.251  Sum_probs=0.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..+++++|+++       ++++.++.++++|.++|.+++++.+||||  ++++|+|+||.+|+.+.
T Consensus       199 ~~~V~evMT~~-------lvt~~~~~~leeA~~iL~~~kieklpVVd--~~g~LvGlIT~kDi~k~  255 (556)
T 4af0_A          199 ETPIKSVMTTE-------VVTGSSPITLEKANSLLRETKKGKLPIVD--SNGHLVSLVARSDLLKN  255 (556)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             ceEhhhhcccc-------eEEecCCCCHHHHHHHHHHccccceeEEc--cCCcEEEEEEechhhhh
Confidence            56899999976       89999999999999999999999999999  89999999999999865

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.25  E-value=1.3e-07  Score=75.48  Aligned_cols=60  Identities=20%  Similarity=0.369  Sum_probs=4.4

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .++.++|++..     +++++.+++++.+++++|.++++..+||+|  ++|+++|+||.+|+++.+.
T Consensus       155 ~~v~~im~~~~-----~~~~v~~~~~l~ea~~~m~~~~~~~lpVVd--~~g~lvGiIt~~Dll~~~~  214 (494)
T 1vrd_A          155 KKIKDLMTPRE-----KLIVAPPDISLEKAKEILHQHRIEKLPLVS--KDNKLVGLITIKDIMSVIE  214 (494)
T ss_dssp             -------------------------------------------------------------CHHHHT
T ss_pred             CcHHHHhCCCC-----CCeEECCCCCHHHHHHHHHHcCCcEEEEEc--CCCeEEEEEEHHHHHhhhc
Confidence            56788888610     289999999999999999999999999999  8899999999999998753

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.21  E-value=1.4e-06  Score=69.91  Aligned_cols=48  Identities=23%  Similarity=0.292  Sum_probs=44.2

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF  116 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~  116 (121)
                      |+.+++++++++++.+++++|.+++++.+||+|  ++++++|+||.+|+.
T Consensus        95 m~~d~v~v~~~~tv~ea~~~m~~~~~s~~PVvd--~~~~lvGiVt~rDL~  142 (496)
T 4fxs_A           95 VVTHPVTVRPEQTIADVMELTHYHGFAGFPVVT--ENNELVGIITGRDVR  142 (496)
T ss_dssp             -CBCCCCBCSSSBHHHHHHHHTSSCCCEEEEEC--SSSBEEEEEEHHHHT
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEc--cCCEEEEEEEHHHHh
Confidence            555689999999999999999999999999998  789999999999986

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=98.19  E-value=2e-07  Score=74.76  Aligned_cols=60  Identities=20%  Similarity=0.288  Sum_probs=0.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|++..     +++++.++.++.+|+++|.+++++.+||+|  ++|+++|+||.+|++++.
T Consensus       146 ~~~V~~vMtp~~-----~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD--e~g~lvGiIT~~Dil~~~  205 (490)
T 4avf_A          146 GDTVAAIMTPKD-----KLVTAREGTPLEEMKAKLYENRIEKMLVVD--ENFYLRGLVTFRDIEKAK  205 (490)
T ss_dssp             -------------------------------------------------------------------
T ss_pred             CCcHHHHhccCC-----CCEEECCCCcHHHHHHHHHHcCCCEEEEEc--CCCcEEEEEehHHhhhhc
Confidence            467889998310     289999999999999999999999999999  899999999999999864

>2zy9_A Mg2+ transporter MGTE; membrane protien, metal transport; 2.94A {Thermus thermophilus} PDB: 2yvx_A

Probab=98.18  E-value=1.8e-06  Score=68.75  Aligned_cols=60  Identities=15%  Similarity=0.318  Sum_probs=51.6

Q ss_pred             CCCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc-----CCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           50 GFESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        50 g~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      .|...+++++|+++       +++++++.++.+|++.|.++     ++..+||+|  ++++++|+||.+|++.+
T Consensus       151 ~~~~~~v~~iM~~~-------~v~v~~~~tv~ea~~~~~~~~~~~~~~~~ipVvd--~~~~lvGiVt~~Dll~~  215 (473)
T 2zy9_A          151 RYEEDEAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD--EKGRLKGVLSLRDLIVA  215 (473)
T ss_dssp             TSCTTBSTTTCBSC-------EEEECTTCBHHHHHHHHHHHGGGCSEEEEEEEEC--TTSBEEEEEEHHHHHHS
T ss_pred             cCCCCCHHHhCCCC-------ceEeCCCCcHHHHHHHHHhccCCcCceeEEEEEC--CCCcEEEEEEHHHHhcC
Confidence            34556777888765       99999999999999999986     589999998  78999999999999853

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=98.11  E-value=3.7e-07  Score=72.90  Aligned_cols=57  Identities=19%  Similarity=0.302  Sum_probs=0.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+++++|+++       ++++++++++.++++.|.+++++.+||+|  ++++++|+||.+|+++..
T Consensus       150 ~~v~~im~~~-------~~~v~~~~~l~eal~~m~~~~~~~lpVVd--e~g~lvGiiT~~Dil~~~  206 (486)
T 2cu0_A          150 KLVKELMTKE-------VITVPESIEVEEALKIMIENRIDRLPVVD--ERGKLVGLITMSDLVARK  206 (486)
T ss_dssp             ------------------------------------------------------------------
T ss_pred             CCHHHHccCC-------CeEECCcCcHHHHHHHHHHcCCCEEEEEe--cCCeEEEEEEHHHHHHhh
Confidence            4567788764       88999999999999999999999999999  789999999999998764

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=98.10  E-value=3e-07  Score=73.85  Aligned_cols=58  Identities=17%  Similarity=0.315  Sum_probs=41.3

Q ss_pred             cccHHHHhh-hcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILK-AKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~-~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..++.++|+ +.      ++++++++.++.+++++|.+++++.+||+|  ++|+++|+||.+|++++
T Consensus       148 ~~~v~diM~p~~------~~vtv~~~~~l~ea~~~m~~~~i~~lpVVD--e~G~l~GiIT~~DIl~~  206 (496)
T 4fxs_A          148 TKSVAAVMTPKE------RLATVKEGATGAEVQEKMHKARVEKILVVN--DEFQLKGMITAKDFHKA  206 (496)
T ss_dssp             TSBGGGTSEEGG------GCCEEECC----CGGGTCC---CCCEEEEC--TTSBCCEEECCC-----
T ss_pred             CCcHHHHhcCCC------CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CCCCEEEeehHhHHHHh
Confidence            567889998 32      279999999999999999999999999999  89999999999999875

>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*

Probab=98.09  E-value=5.9e-07  Score=72.74  Aligned_cols=86  Identities=24%  Similarity=0.376  Sum_probs=17.2

Q ss_pred             cceeeeeccccchhhh----hhc-CC----CcccHHH----HhhhcCC--CCCCceEEEcCCCcHHHHHHHHHhcCCCEE
Q 033339           31 RPVVSSRFESVSSARM----EEH-GF----ESTTISD----ILKAKGK--GADGSWLWCTTDDTVYDAVKSMTQHNVGAL   95 (121)
Q Consensus        31 ~~~~~~~~~~~~~~~~----~~~-g~----~~~~v~d----im~~~~~--~~~~~~~~v~~~~~l~ea~~~m~~~~~~~l   95 (121)
                      .|.+++.++++++..|    ... |+    .+.++++    +-.-+..  .|+.++++++|++|+.||+++|.+++++.+
T Consensus        93 iPlvSA~MDTVTe~~MAIamAr~GGiGvIH~n~sie~Qa~~V~~VKr~e~g~i~dPvtl~P~~Tv~da~~l~~~~~isgv  172 (556)
T 4af0_A           93 TPFLSSPMDTVTEDRMAIALALHGGLGIIHHNCSAEEQAAMVRRVKKYENGFITDPLCLGPDATVGDVLEIKAKFGFCGV  172 (556)
T ss_dssp             SCEEECCCTTTCSHHHHHHHHHTTCEEEECCSSCHHHHHHHHHHHHHCCC------------------------------
T ss_pred             CCEEecCcccccCHHHHHHHHHCCCeEEEcCCCCHHHHHHHHHHHHhcccCccCCCeEcCCCCCHHHHHHHHHHhCCCcc
Confidence            3677788999886644    222 33    3344432    2221222  366678999999999999999999999999


Q ss_pred             EEEeCCC-CCeeEEEEeHHHHH
Q 033339           96 VVVKPGE-QKSVAGIITERGIF  116 (121)
Q Consensus        96 pVvd~~~-~~~lvGiVt~~Di~  116 (121)
                      ||+++++ +++|+||||.+|+.
T Consensus       173 pVvd~g~~~~kLvGIvT~RD~r  194 (556)
T 4af0_A          173 PITETGEPDSKLLGIVTGRDVQ  194 (556)
T ss_dssp             ----------------------
T ss_pred             ccccccCcCCEEEEEEeccccc
Confidence            9997322 57999999999974

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=98.03  E-value=5.1e-07  Score=72.03  Aligned_cols=46  Identities=30%  Similarity=0.416  Sum_probs=0.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      +++++.+++++.+|++.|.+++++.+||+|  ++++++|+||.+|+.+
T Consensus       104 ~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~lvGivt~~Dl~~  149 (494)
T 1vrd_A          104 DPITVTPDMTVKEAIDLMAEYKIGGLPVVD--EEGRLVGLLTNRDVRF  149 (494)
T ss_dssp             ------------------------------------------------
T ss_pred             CCeEECCCCCHHHHHHHHHHcCceEEEEEc--CCCEEEEEEEHHHHHh
Confidence            489999999999999999999999999998  7899999999999974

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=97.95  E-value=1.1e-05  Score=64.09  Aligned_cols=49  Identities=20%  Similarity=0.275  Sum_probs=43.3

Q ss_pred             CceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHH
Q 033339           69 GSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFK  117 (121)
Q Consensus        69 ~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~  117 (121)
                      ++++++.+++++.++++.|.+++++.+||++++++++++|+||.+|++.
T Consensus        98 ~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd~~~~~~lvGivt~~Dl~~  146 (491)
T 1zfj_A           98 IDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRF  146 (491)
T ss_dssp             SSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHH
T ss_pred             CCCeEECCCCcHHHHHHHHHHcCCCEEEEEEeCCCCEEEEEEEHHHHhh
Confidence            3489999999999999999999999999996212689999999999975

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.94  E-value=1.6e-07  Score=75.37  Aligned_cols=58  Identities=17%  Similarity=0.293  Sum_probs=41.1

Q ss_pred             cccHHHHhhh--cCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKA--KGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~--~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+++++|++  +       ++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|+++.+
T Consensus       172 ~~~v~~vm~~~~~-------~~tv~~~~~l~ea~~~m~~~~~~~lpVVd--~~g~lvGiIt~~Dll~~~  231 (514)
T 1jcn_A          172 TTLLSEVMTPRIE-------LVVAPAGVTLKEANEILQRSKKGKLPIVN--DCDELVAIIARTDLKKNR  231 (514)
T ss_dssp             ---------CCBC-------CCCEETTCCSTTTTTHHHHHTCSCCCEES--SSSCCC----CCCCSSCC
T ss_pred             CCCHHHHhCCCCC-------CeEECCCCCHHHHHHHHHHcCCCcccEEC--CCCeEEEEEEHHHHHHHh
Confidence            3567888886  4       89999999999999999999999999999  789999999999987653

>1me8_A Inosine-5'-monophosphate dehydrogenase; alpha beta barrel, oxidoreductase; HET: RVP; 1.90A {Tritrichomonas foetus} SCOP: c.1.5.1 PDB: 1ak5_A* 1me7_A* 1me9_A* 1meh_A* 1mei_A* 1mew_A* 1pvn_A* 1lrt_A*

Probab=97.87  E-value=1.9e-06  Score=69.23  Aligned_cols=49  Identities=16%  Similarity=0.095  Sum_probs=0.0

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCC---CeeEEEEeHHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ---KSVAGIITERGIFK  117 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~---~~lvGiVt~~Di~~  117 (121)
                      |+++++++++++++.+|+++|.+++++.+||+|  ++   ++++|+||.+|++.
T Consensus       103 M~~~~~~v~~~~tv~eal~~m~~~~~s~~pVvd--~~~~~g~lvGiVt~~Dl~~  154 (503)
T 1me8_A          103 FVVSDSNVKPDQTFADVLAISQRTTHNTVAVTD--DGTPHGVLLGLVTQRDYPI  154 (503)
T ss_dssp             ------------------------------------------------------
T ss_pred             cccCCeEECCCCcHHHHHHHHHHcCceEEEEEE--CCCcCCeEEEEEEHHHHHh
Confidence            344589999999999999999999999999998  55   89999999999974

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=97.68  E-value=5.7e-06  Score=66.27  Aligned_cols=47  Identities=17%  Similarity=0.213  Sum_probs=0.0

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF  116 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~  116 (121)
                      |+.+++++++++++.+|+++|.+++++.+||+|   +++++|+||.+|+.
T Consensus        94 m~~~~v~v~~~~tv~ea~~~m~~~~~s~~pVvd---~g~lvGIVt~rDl~  140 (490)
T 4avf_A           94 IVRDPVTVTPSTKIIELLQMAREYGFSGFPVVE---QGELVGIVTGRDLR  140 (490)
T ss_dssp             --------------------------------------------------
T ss_pred             cccCceEeCCCCcHHHHHHHHHHhCCCEEEEEE---CCEEEEEEEhHHhh
Confidence            444589999999999999999999999999997   78999999999986

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=97.56  E-value=5.4e-06  Score=66.47  Aligned_cols=49  Identities=18%  Similarity=0.205  Sum_probs=22.5

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFK  117 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~  117 (121)
                      |+++++++.+++++.+|+++|.+++++.+||+|  +   +++++|+||.+|+..
T Consensus       114 m~~~~~~v~~~~tv~ea~~~m~~~~~~~~pVvd--~~~~~~~lvGiVt~~Dl~~  165 (514)
T 1jcn_A          114 FITDPVVLSPSHTVGDVLEAKMRHGFSGIPITE--TGTMGSKLVGIVTSRDIDF  165 (514)
T ss_dssp             SCSSCCCCCC-----------------CEESCC----------CCEECTTTTC-
T ss_pred             cccCCEEECCCCCHHHHHHHHHhcCCCEEEEEe--CCCcCCEEEEEEEHHHHHh
Confidence            344588999999999999999999999999998  5   489999999999865

>2cu0_A Inosine-5'-monophosphate dehydrogenase; structural genomics, pyrococcus horikoshii OT3, riken structural genomics/PROT initiative, RSGI; HET: XMP; 2.10A {Pyrococcus horikoshii} SCOP: c.1.5.1

Probab=97.13  E-value=6.8e-05  Score=59.76  Aligned_cols=47  Identities=32%  Similarity=0.380  Sum_probs=0.0

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIF  116 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~  116 (121)
                      |..+++++.+++++.++++.|.+++++.+||++  + ++++|+||.+|++
T Consensus        99 m~~~~~~v~~~~tv~ea~~~~~~~~~~~~pVvd--~-~~lvGivt~~Dl~  145 (486)
T 2cu0_A           99 IVEDVITIAPDETVDFALFLMEKHGIDGLPVVE--D-EKVVGIITKKDIA  145 (486)
T ss_dssp             --------------------------------------------------
T ss_pred             cccCceEECCCCCHHHHHHHHHHcCCcEEEEEE--C-CEEEEEEEHHHhc
Confidence            334589999999999999999999999999998  5 9999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	121
d2rc3a1	127	d.37.1.1 (A:23-149) Uncharacterized protein NE2398	1e-04
d2v8qe2	159	d.37.1.1 (E:23-181) 5'-AMP-activated protein kinas	1e-04
d2yzia1	132	d.37.1.1 (A:4-135) Uncharacterized protein PH0107	5e-04
d1jr1a4	120	d.37.1.1 (A:113-232) Type II inosine monophosphate	9e-04
d1pbja3	120	d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {A	0.001
d2o16a3	139	d.37.1.1 (A:20-158) Hypothetical protein VC0737 {V	0.002

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]} Length = 127

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

 Score = 36.7 bits (84), Expect = 1e-04
 Identities = 15/50 (30%), Positives = 29/50 (58%), Gaps = 4/50 (8%)

Query: 54  TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQ 103
            T+  +L+ KG     + +    DD+V++A++ M   N+GAL+V+K  + 
Sbjct: 2   KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMKDEKL 47

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 159

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.1 bits (85), Expect = 1e-04
 Identities = 11/48 (22%), Positives = 25/48 (52%), Gaps = 1/48 (2%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
            +  + + +++DAV S+ ++ +  L V+   E  +   I+T + I K 
Sbjct: 106 LVCISPNASLFDAVSSLIRNKIHRLPVID-PESGNTLYILTHKRILKF 152

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]} Length = 132

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

 Score = 35.2 bits (80), Expect = 5e-04
 Identities = 7/46 (15%), Positives = 22/46 (47%), Gaps = 3/46 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
               +  + + ++ M +H +  +++ + G+   + GI T   + +A
Sbjct: 82  TANVNTPLGEVLRKMAEHRIKHILIEEEGK---IVGIFTLSDLLEA 124

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 34.3 bits (78), Expect = 9e-04
 Identities = 9/48 (18%), Positives = 18/48 (37%), Gaps = 2/48 (4%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
            +      T+ +A + + +   G L +V   E   +  II    + K 
Sbjct: 73  LVVAPAGITLKEANEILQRSKKGKLPIVN--ENDELVAIIARTDLKKN 118

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} Length = 120

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 11/48 (22%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 71  WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA 118
            +  +   T+ +A + M ++ V  L+V +  E   + G+I+   I +A
Sbjct: 74  LVTISPRATIKEAAEKMVKNVVWRLLVEEDDE---IIGVISATDILRA 118

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]} Length = 139

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

 Score = 34.1 bits (77), Expect = 0.002
 Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 3/49 (6%)

Query: 73  WCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN 121
                  + ++   M +H +G L VV       + GIIT+        N
Sbjct: 87  SVAPQAGLKESAIYMQKHKIGCLPVVAKDV---LVGIITDSDFVTIAIN 132

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	121
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	99.36
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.28
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.27
d1y5ha3	123	Hypothetical protein Rv2626c {Mycobacterium tuberc	99.24
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.23
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.22
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.2
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.2
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	99.2
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	99.18
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.18
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.18
d2yzia1	132	Uncharacterized protein PH0107 {Pyrococcus horikos	99.17
d2o16a3	139	Hypothetical protein VC0737 {Vibrio cholerae [TaxI	99.17
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.16
d2rc3a1	127	Uncharacterized protein NE2398 {Nitrosomonas europ	99.15
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.13
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.13
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.12
d1pvma4	142	Hypothetical protein Ta0289 {Archaeon Thermoplasma	99.11
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	99.1
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	99.1
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	99.1
d1pbja3	120	Hypothetical protein MTH1622 {Archaeon Methanobact	99.1
d2yzqa1	156	Uncharacterized protein PH1780 {Pyrococcus horikos	99.08
d2ef7a1	127	Uncharacterized protein ST2348 {Sulfolobus tokodai	99.07
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	99.06
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	99.06
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.04
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	99.04
d1zfja4	126	Type II inosine monophosphate dehydrogenase CBS do	99.03
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	99.02
d2yzqa2	122	Uncharacterized protein PH1780 {Pyrococcus horikos	99.01
d2d4za3	160	Chloride channel protein, CBS tandem {Marbled elec	99.01
d3ddja1	141	Uncharacterized protein SSO3205 {Sulfolobus solfat	99.0
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.98
d1o50a3	145	Hypothetical protein TM0935 {Thermotoga maritima [	98.97
d1vr9a3	121	Hypothetical protein TM0892, CBS tandem {Thermotog	98.97
d2riha1	131	Uncharacterized protein PAE2072 {Pyrobaculum aerop	98.96
d1yava3	132	Hypothetical protein YkuL {Bacillus subtilis [TaxI	98.95
d2nyca1	140	Nuclear protein SNF4 {Baker's yeast (Saccharomyces	98.89
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.89
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.87
d2v8qe2	159	5'-AMP-activated protein kinase subunit gamma-1, A	98.87
d2ooxe2	153	Uncharacterized protein C1556.08c {Schizosaccharom	98.84
d2v8qe1	145	5'-AMP-activated protein kinase subunit gamma-1, A	98.81
d2j9la1	169	Chloride channel protein 5, ClC-5 {Human (Homo sap	98.79
d1jr1a4	120	Type II inosine monophosphate dehydrogenase CBS do	98.73
d2ooxe1	179	Uncharacterized protein C1556.08c {Schizosaccharom	98.72
d3ddja2	135	Uncharacterized protein SSO3205 {Sulfolobus solfat	98.69
d2yvxa2	144	Magnesium transporter MgtE {Thermus thermophilus [	98.61
d2ouxa2	127	Magnesium transporter MgtE {Enterococcus faecalis	98.59
d1lkvx_	213	FliG {Thermotoga maritima [TaxId: 2336]}	91.25

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=99.36  E-value=5.6e-13  Score=87.37  Aligned_cols=59  Identities=22%  Similarity=0.292  Sum_probs=55.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       ++++.+++++.+|+++|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus        64 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lPVVD--~~g~lvGiIt~~Dil~~i~  122 (127)
T d2ouxa2          64 DTLIADILNER-------VISVHVGDDQEDVAQTIRDYDFLAVPVTD--YDDHLLGIVTVDDIIDVID  122 (127)
T ss_dssp             TSBHHHHSBSC-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             cEEhhhhccCC-------CccCCCCCCHHHHHHHHHHhCCEEEEEEe--CCCEEEEEEEHHHHHHHHH
Confidence            57899999986       88999999999999999999999999998  7999999999999998764

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.28  E-value=3.3e-12  Score=82.88  Aligned_cols=58  Identities=17%  Similarity=0.401  Sum_probs=53.0

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ....++++|.++       +.++.+++++.+|+++|.+++++++||+|   +|+++|+||.+|+++++
T Consensus        65 ~~~~v~~im~~~-------~~~v~~~~~~~~~~~~m~~~~~~~lpVvd---~~~lvGiit~~Dil~~l  122 (123)
T d1y5ha3          65 NTATAGELARDS-------IYYVDANASIQEMLNVMEEHQVRRVPVIS---EHRLVGIVTEADIARHL  122 (123)
T ss_dssp             TTSBHHHHHTTC-------CCCEETTCCHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHTC
T ss_pred             ccceEEEEeecc-------ceeeeecchHHHHHHHHHHcCceEEEEEE---CCEEEEEEEHHHHHhhC
Confidence            456789999886       89999999999999999999999999997   58999999999999864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.27  E-value=2.3e-12  Score=84.16  Aligned_cols=60  Identities=18%  Similarity=0.313  Sum_probs=54.4

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhhC
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACHN  121 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~~  121 (121)
                      ...+++++|+++       +.++.+++++.+|+++|.+++++++||+|   +|+++|+||.+|+++++.+
T Consensus        68 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~~~GiIt~~Dil~~~is  127 (127)
T d2rc3a1          68 KDTQVKEIMTRQ-------VAYVDLNNTNEDCMALITEMRVRHLPVLD---DGKVIGLLSIGDLVKDAIS  127 (127)
T ss_dssp             GGSBGGGTSBCS-------CCCBCTTCBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHHC
T ss_pred             cceeEeeeccce-------eEEeccCccHHHHHHHHHHCCCcEEEEEE---CCEEEEEEEHHHHHHHHhC
Confidence            356789999876       89999999999999999999999999997   6899999999999998753

>d1y5ha3 d.37.1.1 (A:2-124) Hypothetical protein Rv2626c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Rv2626c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.24  E-value=3.7e-12  Score=82.59  Aligned_cols=56  Identities=29%  Similarity=0.462  Sum_probs=52.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++++|+|+++       ++++.+++++.+|++.|.+++++++||+|  ++|+++|++|.+|+++.
T Consensus         1 tt~~diM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~pVvd--~~~~~~Giit~~Di~~~   56 (123)
T d1y5ha3           1 TTARDIMNAG-------VTCVGEHETLTAAAQYMREHDIGALPICG--DDDRLHGMLTDRDIVIK   56 (123)
T ss_dssp             CCHHHHSEET-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--GGGBEEEEEEHHHHHHT
T ss_pred             CCHHHhcCCC-------CcEECCcCcHHHHHHHHHHcCCCceEEEe--ccchhhhhhhhhhHhhh
Confidence            4789999886       89999999999999999999999999998  78999999999999764

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.23  E-value=1.1e-12  Score=87.84  Aligned_cols=58  Identities=17%  Similarity=0.328  Sum_probs=53.2

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.++|+++       +.++++++++.++++.|.+++++.+||+|  ++|+++||||.+|+++++
T Consensus        98 ~~~v~~~m~~~-------~~tv~~~~~l~~~~~~m~~~~~~~lpVvd--~~g~lvGivt~~Dil~~l  155 (156)
T d2yzqa1          98 NKPVAEIMTRD-------VIVATPHMTVHEVALKMAKYSIEQLPVIR--GEGDLIGLIRDFDLLKVL  155 (156)
T ss_dssp             CCBGGGTCBSS-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEE--TTTEEEEEEEHHHHGGGG
T ss_pred             CCEeehhcccC-------ceEECcccccHHHHHHHHHcCeeEEEEEe--CCCEEEEEEEHHHHHHHh
Confidence            45778888775       89999999999999999999999999999  899999999999999876

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.22  E-value=4.2e-12  Score=83.12  Aligned_cols=59  Identities=25%  Similarity=0.345  Sum_probs=55.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|+++       ++++.+++++.+|+++|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus        73 ~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~i~~lpVvd--~~g~lvGiit~~Dil~~~~  131 (135)
T d3ddja2          73 TTPIIDYMTPN-------PVTVYNTSDEFTAINIMVTRNFGSLPVVD--INDKPVGIVTEREFLLLYK  131 (135)
T ss_dssp             TSBGGGTSEES-------CCCEETTSCHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHGGGGG
T ss_pred             cCCHHHHhCCc-------cceEEeccccchhhhhhhhcceeEEEEEe--CCCEEEEEEEHHHHHHHHH
Confidence            46788999886       89999999999999999999999999999  8999999999999999875

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.20  E-value=1.6e-11  Score=79.30  Aligned_cols=59  Identities=17%  Similarity=0.333  Sum_probs=53.9

Q ss_pred             CCcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           51 FESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        51 ~~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ....++.++|+++       +.++++++++.+|+++|.++++.++||++   +|+++|+||.+|++++.
T Consensus        61 ~~~~~v~~~m~~~-------~~~v~~~~~l~~a~~~m~~~~~~~l~V~~---~~~l~Givt~~Dil~A~  119 (120)
T d1pbja3          61 LAEVKVWEVMERD-------LVTISPRATIKEAAEKMVKNVVWRLLVEE---DDEIIGVISATDILRAK  119 (120)
T ss_dssp             TTTSBHHHHCBCG-------GGEECTTSCHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHH
T ss_pred             ccceeEeeecccc-------cccccchhHHHHHHHHHHHcCCeEEEEEE---CCEEEEEEEHHHHHhcC
Confidence            3567899999886       89999999999999999999999999986   78999999999999874

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.20  E-value=1.9e-11  Score=80.74  Aligned_cols=59  Identities=19%  Similarity=0.309  Sum_probs=54.3

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...++.++|.++       ++++++++++.+|+++|.+++++++||+|   +|+++|+||.+|+++++.
T Consensus        73 ~~~~v~~im~~~-------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd---~~~lvGiit~~Dil~~~~  131 (139)
T d2o16a3          73 FETPLFEVMHTD-------VTSVAPQAGLKESAIYMQKHKIGCLPVVA---KDVLVGIITDSDFVTIAI  131 (139)
T ss_dssp             CCCBHHHHSCSC-------EEEBCTTSBHHHHHHHHHHTTCSCEEEEE---TTEEEEEECHHHHHHHHH
T ss_pred             cccchhHhhccc-------cccccccchHHHHHHHHHHcCceEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            356899999876       89999999999999999999999999997   589999999999999875

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=99.20  E-value=1.6e-11  Score=80.34  Aligned_cols=60  Identities=13%  Similarity=0.198  Sum_probs=54.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .+++++|.+..     .+.++.+++++.+|+++|.+++++++||+|  ++|+++|++|.+|+++++.
T Consensus         2 ~tv~~~mip~~-----~v~~v~~~~tl~~a~~~m~~~~~s~~pVvd--~~~~~vGiit~~di~~~~~   61 (132)
T d1yava3           2 ATVGQFMIEAD-----KVAHVQVGNNLEHALLVLTKTGYTAIPVLD--PSYRLHGLIGTNMIMNSIF   61 (132)
T ss_dssp             CBHHHHSEEGG-----GSCCEETTCBHHHHHHHHHHHCCSEEEEEC--TTCBEEEEEEHHHHHHHHB
T ss_pred             CCHHHcccccc-----ceEEEcCCCCHHHHHHHHHhhCCCceEEee--cccccccEEEcchhHHHhh
Confidence            57899997643     289999999999999999999999999998  7899999999999998764

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=99.18  E-value=1e-11  Score=82.84  Aligned_cols=59  Identities=22%  Similarity=0.389  Sum_probs=53.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       ++++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        64 ~~~v~~im~~~-------~~~v~~~~~~~~a~~~m~~~~~~~lPVVd--~~g~lvGiIt~~Dil~~l~  122 (144)
T d2yvxa2          64 RTRVAEIMNPK-------VVYVRTDTDQEEVARLMADYDFTVLPVVD--EEGRLVGIVTVDDVLDVLE  122 (144)
T ss_dssp             TCBSTTTSBSS-------CCCEESSCCHHHHHHHHHHSCCSEEEEEC--SSCBEEEEEEHHHHHHHHH
T ss_pred             ccchHHhcccC-------CccCCCCChHHHHHHHHHHcCCCEEEEEe--ECCEEEEEEEHHHHHHHHH
Confidence            46778888875       89999999999999999999999999999  7899999999999998764

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.18  E-value=6.5e-12  Score=83.47  Aligned_cols=59  Identities=17%  Similarity=0.234  Sum_probs=54.0

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ...+++++|.++       ++++.+++++.+|+++|.+++++++||+|  ++|+++|+||..|+++++
T Consensus        67 ~~~~v~~im~~~-------~~~v~~~~~l~~~~~~m~~~~~~~lpVvd--~~g~l~Giit~~Dil~~l  125 (142)
T d1pvma4          67 DEVPIRLVMRKP-------IPKVKSDYDVKDVAAYLSENGLERCAVVD--DPGRVVGIVTLTDLSRYL  125 (142)
T ss_dssp             GGSBGGGTSBSS-------CCEEETTCBHHHHHHHHHHHTCSEEEEEC--TTCCEEEEEEHHHHTTTS
T ss_pred             cccccccccccc-------cccccchhhHHHHHHHHHHcCCcEEEEEe--cCCEEEEEEEHHHHHHHH
Confidence            356789999875       89999999999999999999999999999  789999999999999865

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.18  E-value=2e-11  Score=80.06  Aligned_cols=58  Identities=26%  Similarity=0.429  Sum_probs=53.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..+|+++|+++       ++++++++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++.+
T Consensus         4 ~~pV~~im~~~-------~~~v~~~~t~~~a~~~m~~~~~~~~~Vvd--~~~~~~Giit~~di~~~~   61 (132)
T d2yzia1           4 KAPIKVYMTKK-------LLGVKPSTSVQEASRLMMEFDVGSLVVIN--DDGNVVGFFTKSDIIRRV   61 (132)
T ss_dssp             TSBGGGTCBCC-------CCEECTTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHT
T ss_pred             CCcHHHHcCCC-------CeEECCcCcHHHHHHHHHHcCCcEEEEec--ccceeeeeeeHHHHHHHH
Confidence            35799999876       89999999999999999999999999999  789999999999998764

>d2yzia1 d.37.1.1 (A:4-135) Uncharacterized protein PH0107 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH0107
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.17  E-value=3.3e-11  Score=78.97  Aligned_cols=59  Identities=12%  Similarity=0.339  Sum_probs=53.8

Q ss_pred             CcccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           52 ESTTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        52 ~~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...+++++|.++       ++++.+++++.+|++.|.+++++++||++   +|+++|+||.+|+++++.
T Consensus        68 ~~~~v~~im~~~-------~~~v~~~~~~~~~~~~m~~~~~~~l~V~~---~~~~vGivt~~Dil~a~~  126 (132)
T d2yzia1          68 YDIPVERIMTRN-------LITANVNTPLGEVLRKMAEHRIKHILIEE---EGKIVGIFTLSDLLEASR  126 (132)
T ss_dssp             TTSBGGGTCBCS-------CCEEETTSBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             cceeEeeccccc-------ccccCcchHHHHHHHHHHHcCCCEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            356899999876       89999999999999999999999999875   799999999999999875

>d2o16a3 d.37.1.1 (A:20-158) Hypothetical protein VC0737 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein VC0737
species: Vibrio cholerae [TaxId: 666]

Probab=99.17  E-value=1.2e-11  Score=81.64  Aligned_cols=57  Identities=19%  Similarity=0.294  Sum_probs=52.9

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+++|+|+++       +.++++++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++.+
T Consensus         2 i~v~diM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~lpVvd--~~~~~~Giit~~dl~~~~   58 (139)
T d2o16a3           2 IKVEDMMTRH-------PHTLLRTHTLNDAKHLMEALDIRHVPIVD--ANKKLLGIVSQRDLLAAQ   58 (139)
T ss_dssp             CBGGGTSEES-------CCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHH
T ss_pred             EEHHHhCcCC-------CeEECCcCCHHHHHHHHHHcCCCeeeeec--ccccccccccHHHHHHHH
Confidence            4688999875       89999999999999999999999999999  789999999999998765

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.16  E-value=2.2e-11  Score=79.99  Aligned_cols=59  Identities=24%  Similarity=0.447  Sum_probs=54.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+++++|.++       ++++.+++++.+|+++|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus        72 ~~~v~~im~~~-------~~~v~~~~~~~~~~~~m~~~~~~~l~Vvd--~~~~~iGiIt~~Dil~~l~  130 (141)
T d3ddja1          72 GKVVKDVMVTN-------LVTIDELASVNRAAAEMIVKRIGSLLILN--KDNTIRGIITERDLLIALH  130 (141)
T ss_dssp             TCBHHHHSBCC-------CCBCCTTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             CCCHHHHhCcc-------cccccccchhhHHHHHHHHcCCCEEEEEc--cCCEEEEEEEHHHHHHHHH
Confidence            56899999875       89999999999999999999999999999  7899999999999998864

>d2rc3a1 d.37.1.1 (A:23-149) Uncharacterized protein NE2398 {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein NE2398
species: Nitrosomonas europaea [TaxId: 915]

Probab=99.15  E-value=8.1e-11  Score=76.55  Aligned_cols=59  Identities=34%  Similarity=0.628  Sum_probs=52.1

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+++|+|..+..    +++++++++|+.+|+++|.+++++++||++   +++++|+||.+|+++.+
T Consensus         2 ~tV~dim~~k~~----~v~~i~~~~tl~~a~~~m~~~~~~~vpV~~---~~~~vGiit~~Di~~~~   60 (127)
T d2rc3a1           2 KTVKHLLQEKGH----TVVAIGPDDSVFNAMQKMAADNIGALLVMK---DEKLVGILTERDFSRKS   60 (127)
T ss_dssp             CBHHHHHHHHCC----CCCEECTTSBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHG
T ss_pred             ccHHHHHccCCC----ccEEECCcCcHHHHHHHHHHcCCCEEEEEE---CCeEEEEEEccchhhhh
Confidence            368999987532    389999999999999999999999999996   68999999999998764

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.13  E-value=3.2e-11  Score=78.08  Aligned_cols=59  Identities=22%  Similarity=0.270  Sum_probs=50.5

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...+.++|.++       ++++++++++.+|+++|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus        59 ~~~~~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVvd--~~~~liGiit~~dil~~~~  117 (122)
T d2yzqa2          59 EEQLAMLVKRD-------VPVVKENDTLKKAAKLMLEYDYRRVVVVD--SKGKPVGILTVGDIIRRYF  117 (122)
T ss_dssp             -----CCCBSC-------CCEEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHTT
T ss_pred             ccchhhccccc-------eeecchhhHHHHHHHHHHHcCcEEEEEEe--CCCEEEEEEEHHHHHHHHH
Confidence            45677788775       88999999999999999999999999999  8999999999999998865

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.13  E-value=2.8e-11  Score=78.73  Aligned_cols=59  Identities=27%  Similarity=0.385  Sum_probs=54.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       +.++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        66 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~~~lvGiit~~Dll~~i~  124 (127)
T d2ef7a1          66 ETKAEEFMTAS-------LITIREDSPITGALALMRQFNIRHLPVVD--DKGNLKGIISIRDITRAID  124 (127)
T ss_dssp             TCBGGGTSEEC-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             cchhhhhhhhh-------ccccccccchhHHHHHHHHcCceEEEEEe--CCCeEEEEEEHHHHHHHHH
Confidence            56788999875       88999999999999999999999999998  7899999999999999875

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.12  E-value=5.2e-11  Score=77.40  Aligned_cols=53  Identities=19%  Similarity=0.227  Sum_probs=46.6

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      |+.+++++++++|+.+|+++|.+++++++||+|+..+++++|+||.+|+.++.
T Consensus         3 mi~dpvtv~~~~tv~~a~~~m~~~~~~~~pVvD~~~~~~lvGivt~~Di~~~~   55 (126)
T d1zfja4           3 VIIDPFFLTPEHKVSEAEELMQRYRISGVPIVETLANRKLVGIITNRDMRFIS   55 (126)
T ss_dssp             TSSSCCCBCSSSBHHHHHHHHHHTTCSEEEEESCTTTCBEEEEEEHHHHHHCS
T ss_pred             CEeCceEECCCCCHHHHHHHHHHhCCCcEEEEeeccCCeEEEEeEHHHHHHhh
Confidence            55568899999999999999999999999999832378999999999998753

>d1pvma4 d.37.1.1 (A:1-142) Hypothetical protein Ta0289 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein Ta0289
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.11  E-value=6.1e-11  Score=78.62  Aligned_cols=57  Identities=28%  Similarity=0.463  Sum_probs=53.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+|+|+|+++       +.++++++++.+|++.|.+++++++||+|  ++|+++|+||.+|+++.+
T Consensus         3 m~v~dim~~~-------~~~v~~~~tl~~a~~~m~~~~~~~~~V~d--~~~~~~Giit~~di~~~~   59 (142)
T d1pvma4           3 MRVEKIMNSN-------FKTVNWNTTVFDAVKIMNENHLYGLVVKD--DNGNDVGLLSERSIIKRF   59 (142)
T ss_dssp             CBGGGTSBTT-------CCEEETTCBHHHHHHHHHHHTCCEEEEEC--TTSCEEEEEEHHHHHHHT
T ss_pred             EEHHHhCCCC-------CcEECCcCcHHHHHHHHHHCCCceEeeec--cCCcccceEEeechhhhh
Confidence            5789999886       89999999999999999999999999998  789999999999998764

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.10  E-value=4.4e-10  Score=74.08  Aligned_cols=65  Identities=23%  Similarity=0.337  Sum_probs=55.0

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.+.+... ..|..+++++.+++++.+++++|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus        77 ~~~v~~~~~~~-~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~g~l~GiVt~~dii~~lv  141 (145)
T d2v8qe1          77 DVSVTKALQHR-SHYFEGVLKCYLHETLEAIINRLVEAEVHRLVVVD--EHDVVKGIVSLSDILQALV  141 (145)
T ss_dssp             SSBHHHHGGGC-CSCCCSCCEECTTSBHHHHHHHHHHHTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             hhhhhhccchh-hhccCCCeEECCCCcHHHHHHHHHHcCceEEEEEc--cCCEEEEEEEHHHHHHHHH
Confidence            45666766643 22455688999999999999999999999999998  8999999999999999874

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=99.10  E-value=1.9e-11  Score=79.09  Aligned_cols=59  Identities=17%  Similarity=0.273  Sum_probs=44.7

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .++..+|...+     +++++.++.++.+|+++|.+++++++||+|  ++|+++|+||.+|++++.
T Consensus        61 ~~~~~~~~~~~-----~~~~v~~~~~~~~a~~~m~~~~i~~lpVVd--~~~~lvGiiT~~Di~k~~  119 (120)
T d1jr1a4          61 RFLEEIMTKRE-----DLVVAPAGITLKEANEILQRSKKGKLPIVN--ENDELVAIIARTDLKKNR  119 (120)
T ss_dssp             -----CCSBTT-----TSCCEETTCCHHHHHHHTCSCC---CEEEE--TTTEEEEEECHHHHHHHH
T ss_pred             ceeEEEEeecc-----CceEECCCCCHHHHHHHHHHcCccEEEEEc--CCCEEEEEEEHHHhhhcc
Confidence            34555554432     388999999999999999999999999999  899999999999999863

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=99.10  E-value=1.7e-10  Score=77.00  Aligned_cols=65  Identities=17%  Similarity=0.238  Sum_probs=55.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.+.|...+. +..++.++.+++++.+|++.|.+++++.+||+|  ++|+++|+||.+|+++++.
T Consensus        69 ~~~v~~~~~~~~~-~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd--~~~~lvGivT~~Dil~~~~  133 (153)
T d2ooxe2          69 DLSVGEALLKRPA-NFDGVHTCRATDRLDGIFDAIKHSRVHRLFVVD--ENLKLEGILSLADILNYII  133 (153)
T ss_dssp             GSBHHHHHHTSCC-CSSCCCEECTTCBHHHHHHHHHHSCCSEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             ccchhhheeeeec-ccCCCeEECCCCcHHHHHHhhhhceeeEEEEEc--CCCEEEEEEEHHHHHHHHH
Confidence            4678888876432 334578999999999999999999999999999  8899999999999999864

>d1pbja3 d.37.1.1 (A:2-121) Hypothetical protein MTH1622 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein MTH1622
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=99.10  E-value=1.3e-10  Score=74.87  Aligned_cols=56  Identities=20%  Similarity=0.303  Sum_probs=51.2

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +|+|+|+++       +.++++++|+.+|++.|.+++.+.+||++   +|+++|+||.+|+++++.
T Consensus         1 kV~diM~~~-------~~~v~~~~sl~ea~~~~~~~~~~~~~V~~---~~~~~Gvit~~Di~~~l~   56 (120)
T d1pbja3           1 RVEDVMVTD-------VDTIDITASLEDVLRNYVENAKGSSVVVK---EGVRVGIVTTWDVLEAIA   56 (120)
T ss_dssp             CHHHHCBCS-------CCEEETTCBHHHHHHHHHHHCCCEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             ChHHhCCCC-------CeEECCcCcHHHHHHHHHHcCceEEEEEe---CCcEEEEEEeeecccccc
Confidence            478999986       89999999999999999999999999997   589999999999998753

>d2yzqa1 d.37.1.1 (A:123-278) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.08  E-value=2.5e-11  Score=80.99  Aligned_cols=57  Identities=19%  Similarity=0.229  Sum_probs=52.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +.+++++|.++       ++++.+++++.+|++.|.+++++++||+|  ++|+++|+||..|+++.
T Consensus         3 ~~~v~~~m~r~-------v~~v~~~~~l~~a~~~m~~~~~~~lPVvd--~~~~lvG~it~~Dl~~~   59 (156)
T d2yzqa1           3 GVEIEPYYQRY-------VSIVWEGTPLKAALKALLLSNSMALPVVD--SEGNLVGIVDETDLLRD   59 (156)
T ss_dssp             GCBSTTTSBSC-------CCCEETTSBHHHHHHHHHTCSSSEEEEEC--TTSCEEEEEEGGGGGGC
T ss_pred             CCCHHHHhcCC-------CeEECCcCcHHHHHHHHHHcCCCEEEEEe--CCCCceeEEeeeechhh
Confidence            56788889876       99999999999999999999999999999  78999999999998754

>d2ef7a1 d.37.1.1 (A:1-127) Uncharacterized protein ST2348 {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein ST2348
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=99.07  E-value=1.5e-10  Score=75.21  Aligned_cols=58  Identities=34%  Similarity=0.519  Sum_probs=52.7

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ...|+++|+++       ++++++++++.+|+++|.+++++++||++   +++++|+||.+|+++.+.
T Consensus         3 ~~~V~d~m~~~-------~v~v~~~~tl~~a~~~m~~~~~~~~pV~d---~~~~~Givt~~dl~~~~~   60 (127)
T d2ef7a1           3 EEIVKEYMKTQ-------VISVTKDAKLNDIAKVMTEKNIGSVIVVD---GNKPVGIITERDIVKAIG   60 (127)
T ss_dssp             CCBGGGTSBCS-------CCEEETTCBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             ccCHHHhCCCC-------CeEECCcCcHHHHHHHHHHcCCceEEeec---ccchhhhcchhHHHHHHH
Confidence            45788999875       89999999999999999999999999997   689999999999998764

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=2.6e-11  Score=82.29  Aligned_cols=58  Identities=17%  Similarity=0.202  Sum_probs=52.8

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.+.       +.++.+++++.+++++|.+++..++||++   +|+++|+||.+|+++++.
T Consensus        99 ~~~v~~im~~~-------~~tv~~~~~l~~v~~~~~~~~~~~l~V~d---~g~lvGiIt~~Dil~~l~  156 (169)
T d2j9la1          99 TLKLRNILDLS-------PFTVTDLTPMEIVVDIFRKLGLRQCLVTH---NGRLLGIITKKDVLKHIA  156 (169)
T ss_dssp             CEECGGGEESS-------CCEEETTSBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             ccchhhhccCC-------CEEECCCCcHHHHHHHHHhcCceEEEEEE---CCEEEEEEEHHHHHHHHH
Confidence            45688999876       88999999999999999999999999986   789999999999999875

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=99.06  E-value=9.4e-11  Score=75.64  Aligned_cols=59  Identities=15%  Similarity=0.241  Sum_probs=54.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|..+       ++++++++++.+|+++|.+++..++||+|  ++|+++|+||..|+++++.
T Consensus        59 ~~~v~~~~~~~-------~~~v~~~~~l~~~~~~~~~~~~~~lpVvd--e~g~~~Gvit~~dil~~l~  117 (121)
T d1vr9a3          59 DSSVFNKVSLP-------DFFVHEEDNITHALLLFLEHQEPYLPVVD--EEMRLKGAVSLHDFLEALI  117 (121)
T ss_dssp             TSBSGGGCBCT-------TCCEETTSBHHHHHHHHHHCCCSEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             cccccccccCc-------cEEECCCCCHHHHHHHHHhcCceeeeeEC--CCCeEEEEEEHHHHHHHHH
Confidence            46788888876       78999999999999999999999999999  8999999999999999875

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.04  E-value=1.1e-10  Score=77.46  Aligned_cols=55  Identities=7%  Similarity=0.016  Sum_probs=48.7

Q ss_pred             HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +.++|.+.       ++++++++++.+|+++|.+++++++||++   +|+++||||.+||++++.
T Consensus       105 ~~~~~~~~-------~~tv~~~~~l~~~~~~m~~~~v~~l~V~d---~g~lvGiIt~~Di~k~I~  159 (160)
T d2d4za3         105 ETCRIDQS-------PFQLVEGTSLQKTHTLFSLLGLDRAYVTS---MGKLVGVVALAEIQAAIE  159 (160)
T ss_dssp             TSSCEECC-------SCCBCTTCBHHHHHHHHHHHTCSEEEEEE---TTEEEEEEEHHHHHHHHH
T ss_pred             eeecccCC-------CEEEcCCCCHHHHHHHHHHcCCeEEEEEE---CCEEEEEEEHHHHHHHhC
Confidence            44555554       89999999999999999999999999996   699999999999999874

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.04  E-value=1.7e-10  Score=74.98  Aligned_cols=59  Identities=20%  Similarity=0.332  Sum_probs=52.6

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +|+|+|+++       ++++++++++.+|++.|.+++.+++||++.+++++++|++|..|+.+++.
T Consensus         2 ~V~dim~~~-------~v~v~~~~tl~ea~~~m~~~~~~~~~Vv~~d~~~~~iGi~~~~dl~~~~~   60 (131)
T d2riha1           2 RTSELLKRP-------PVSLPETATIREVATELAKNRVGLAVLTARDNPKRPVAVVSERDILRAVA   60 (131)
T ss_dssp             BGGGGCCSC-------CEEEETTCBHHHHHHHHHHHTCSEEEEEETTEEEEEEEEEEHHHHHHHHH
T ss_pred             CHHHhccCC-------CEEECCCCcHHHHHHHHHHhCCCcEEEEEEcCCCEEEEEEeeeccccccc
Confidence            678999876       89999999999999999999999999995335689999999999998753

>d1zfja4 d.37.1.1 (A:95-220) Type II inosine monophosphate dehydrogenase CBS domains {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Streptococcus pyogenes [TaxId: 1314]

Probab=99.03  E-value=3e-10  Score=73.67  Aligned_cols=49  Identities=18%  Similarity=0.279  Sum_probs=46.0

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +++++.+++++.+|+++|.+++++.+||+|  ++|+++|+||.+|++++..
T Consensus        69 ~~~~~~~~~~l~~a~~~m~~~~~~~lpVVd--~~g~lvGiiT~~Dil~~~~  117 (126)
T d1zfja4          69 HLVTAAVGTDLETAERILHEHRIEKLPLVD--NSGRLSGLITIKDIEKVIE  117 (126)
T ss_dssp             CCCCEETTCCHHHHHHHHHHTTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             ceeecCCCCCHHHHHHHHHhcCCcEEEEEc--CCCeEEEEEEHHHHHHHhh
Confidence            378999999999999999999999999998  8899999999999998854

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=99.02  E-value=2.2e-10  Score=75.44  Aligned_cols=58  Identities=22%  Similarity=0.328  Sum_probs=52.3

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|..        ++++.+++++.+|+++|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus        83 ~~~~~~~~~~--------~~~i~~~~~l~~a~~~m~~~~i~~lpVVd--~~g~i~Gvit~~dil~~l~  140 (145)
T d1o50a3          83 AKNASEIMLD--------PVYVHMDTPLEEALKLMIDNNIQEMPVVD--EKGEIVGDLNSLEILLALW  140 (145)
T ss_dssp             SCBHHHHCBC--------CCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHHH
T ss_pred             ccCHHHHcCC--------CEEEcCCCCHHHHHHHHHHcCceEEEEEe--CCCeEEEEEEHHHHHHHHH
Confidence            4567777764        67899999999999999999999999998  8999999999999999875

>d2yzqa2 d.37.1.1 (A:1-122) Uncharacterized protein PH1780 {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PH1780
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=99.01  E-value=4.4e-11  Score=77.41  Aligned_cols=56  Identities=20%  Similarity=0.232  Sum_probs=37.9

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++++++|+++       ++++++++++.+|+++|.+++++.+||+|  ++|+++|+||.+|++.+
T Consensus         1 m~v~diM~~~-------~v~v~~~~~v~~a~~~m~~~~~~~~~Vvd--~~~~~~G~it~~dl~~~   56 (122)
T d2yzqa2           1 MRVKTIMTQN-------PVTITLPATRNYALELFKKYKVRSFPVVN--KEGKLVGIISVKRILVN   56 (122)
T ss_dssp             CBHHHHSEES-------CCCEESSCC------------CCEEEEEC--TTCCEEEEEESSCC---
T ss_pred             CCcccccCCC-------CEEECCcCcHHHHHHHHHHcCCcEEEEEe--ccccchhhhhcchhhhh
Confidence            3689999886       88999999999999999999999999999  88999999999998765

>d2d4za3 d.37.1.1 (A:527-606,A:691-770) Chloride channel protein, CBS tandem {Marbled electric ray (Torpedo marmorata) [TaxId: 7788]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein, CBS tandem
species: Marbled electric ray (Torpedo marmorata) [TaxId: 7788]

Probab=99.01  E-value=2.2e-10  Score=76.01  Aligned_cols=61  Identities=13%  Similarity=0.152  Sum_probs=54.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+|+|+|+++       ++++++++++.+|+++|.+++++++||+++.+++.++|++|..|+++++.
T Consensus        10 ~~~V~diM~~~-------~~~v~~~~tv~e~~~~l~~~~~~~~PVvd~~~~~~lvg~is~~dl~~~l~   70 (160)
T d2d4za3          10 NIQVGDIMVRD-------VTSIASTSTYGDLLHVLRQTKLKFFPFVDTPDTNTLLGSIDRTEVEGLLQ   70 (160)
T ss_dssp             SCBTTSSSBSS-------CCCEETTCBHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             ceEHHHhcCCC-------CeEECCCCcHHHHHHHHHhcCCCccccccccccccccccchHHHHHHHHh
Confidence            57899999975       89999999999999999999999999998545689999999999988753

>d3ddja1 d.37.1.1 (A:136-276) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=99.00  E-value=3.9e-10  Score=73.82  Aligned_cols=57  Identities=21%  Similarity=0.220  Sum_probs=53.2

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+|+++|+++       +.++++++|+.+|+++|.+++++.+||++  ++++++|++|..|+.+.+
T Consensus         2 ~~V~~iMt~~-------v~~v~~~~tl~~a~~~m~~~~~~~ipVv~--~~~~~~g~i~~~di~~~~   58 (141)
T d3ddja1           2 FPVKVFMSTK-------VQTIYKEVRLDQAVKLMLRRGFRRLPVID--DDNKVVGIVTVVNAIKQL   58 (141)
T ss_dssp             CBHHHHSBCS-------CCCEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHHHH
T ss_pred             EeeHHhCcCC-------CeEEcCcCcHHHHHHHHHHcCCCeeeccc--ccCccccccccccchhhh
Confidence            4799999986       89999999999999999999999999999  889999999999998765

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.98  E-value=5.7e-10  Score=73.29  Aligned_cols=64  Identities=17%  Similarity=0.289  Sum_probs=50.0

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..+.+.+..... +..+++++++++++.+|+++|.+++++++||+|  ++|+++|+||.+|+++++.
T Consensus        75 ~~~~~~~~~~~~-~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~VVd--~~~~l~GiIt~~Dii~~l~  138 (140)
T d2nyca1          75 LSVGEALMRRSD-DFEGVYTCTKNDKLSTIMDNIRKARVHRFFVVD--DVGRLVGVLTLSDILKYIL  138 (140)
T ss_dssp             SBHHHHHHHCC-------CEECTTSBHHHHHHHHHHHTCSEEEEEC--TTSBEEEEEEHHHHHHHHH
T ss_pred             cchhhhhhhhhh-cccccEEECCCCcHHHHHHHHHhcCeeEEEEEe--CCCeEEEEEEHHHHHHHHh
Confidence            345555543311 223478999999999999999999999999999  8999999999999999864

>d1o50a3 d.37.1.1 (A:1-145) Hypothetical protein TM0935 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0935
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=4e-10  Score=74.12  Aligned_cols=55  Identities=16%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             HHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           56 ISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        56 v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +.++|..+       ++++.+++++.+|++.|.+++++.+||+|  ++++++|+||.+|+.+.+
T Consensus         6 v~~~m~~~-------p~~v~~~~~v~~a~~~m~~~~~~~ipVvd--~~~~~vGiis~~Dl~~~~   60 (145)
T d1o50a3           6 VCKLISLK-------PTVVEEDTPIEEIVDRILEDPVTRTVYVA--RDNKLVGMIPVMHLLKVS   60 (145)
T ss_dssp             HTTSSCCC-------CEEECTTCBHHHHHHHHHHSTTCCEEEEE--ETTEEEEEEEHHHHHHHH
T ss_pred             hHHhCCCC-------CEEECCcCcHHHHHHHHHHcCCceEEEec--cCcceeeeeccchhhhhh
Confidence            44456654       89999999999999999999999999999  789999999999998764

>d1vr9a3 d.37.1.1 (A:1-121) Hypothetical protein TM0892, CBS tandem {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein TM0892, CBS tandem
species: Thermotoga maritima [TaxId: 2336]

Probab=98.97  E-value=2.1e-10  Score=73.92  Aligned_cols=55  Identities=11%  Similarity=0.262  Sum_probs=50.5

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      +++++|.+.       ++++++++|+.+|+++|.+++.+.+||+|  ++|+++|++|.+|++++
T Consensus         2 ~v~~~m~~~-------~~~v~~~~tv~ea~~~m~~~~~~~v~Vvd--~~~~~~Gii~~~dl~~~   56 (121)
T d1vr9a3           2 KVKKWVTQD-------FPMVEESATVRECLHRMRQYQTNECIVKD--REGHFRGVVNKEDLLDL   56 (121)
T ss_dssp             BGGGGCBSC-------SCEEETTCBHHHHHHHHHHTTSSEEEEEC--TTSBEEEEEEGGGGTTS
T ss_pred             CchhhhcCC-------CeEECCCCCHHHHHHhhhhcCcEEEEEEe--CCceeEEEeehhhhhhh
Confidence            577888876       89999999999999999999999999998  78999999999998764

>d2riha1 d.37.1.1 (A:2-132) Uncharacterized protein PAE2072 {Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein PAE2072
species: Pyrobaculum aerophilum [TaxId: 13773]

Probab=98.96  E-value=4.4e-10  Score=72.92  Aligned_cols=47  Identities=23%  Similarity=0.320  Sum_probs=44.5

Q ss_pred             eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           71 WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        71 ~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .+++.+++++.+|+++|.+++++.+||+|  ++|+++|+||..|+++++
T Consensus        76 ~~~v~~~~~~~~a~~~m~~~~i~~lpVvd--~~g~l~Giit~~Dll~~~  122 (131)
T d2riha1          76 PITVLDTDPVHVAAEKMRRHNIRHVVVVN--KNGELVGVLSIRDLCFER  122 (131)
T ss_dssp             CCEEETTSBHHHHHHHHHHHTCSEEEEEC--TTSCEEEEEEHHHHHSCH
T ss_pred             ceeEeeecchHHHHHHHHHCCeEEEEEEc--CCCeEEEEEEHHHHHHHH
Confidence            78999999999999999999999999999  899999999999998764

>d1yava3 d.37.1.1 (A:13-144) Hypothetical protein YkuL {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Hypothetical protein YkuL
species: Bacillus subtilis [TaxId: 1423]

Probab=98.95  E-value=5.9e-10  Score=72.63  Aligned_cols=57  Identities=14%  Similarity=0.279  Sum_probs=51.4

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ..++.++|.++       ++++++++++.+++.+|.+++  .+||+|  ++|+++|+||.+|+++++.
T Consensus        73 ~~~v~~~m~~~-------~~~v~~~~~l~~~~~~~~~~~--~l~Vvd--~~~~~~Givt~~dil~~l~  129 (132)
T d1yava3          73 QITVEEVMLTD-------IPRLHINDPIMKGFGMVINNG--FVCVEN--DEQVFEGIFTRRVVLKELN  129 (132)
T ss_dssp             TSBHHHHSBCS-------CCEEETTSBHHHHHHHTTTCS--EEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             ccccccccccc-------ccccccchhHHHHHHHHHhCC--EEEEEc--cCCEEEEEEEHHHHHHHHH
Confidence            56899999875       889999999999999998765  599999  8899999999999999874

>d2nyca1 d.37.1.1 (A:181-320) Nuclear protein SNF4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Nuclear protein SNF4
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.89  E-value=1.6e-09  Score=71.10  Aligned_cols=49  Identities=14%  Similarity=0.276  Sum_probs=45.9

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      ++.++.+++++.+|+++|.+++++++||+|  ++|+++|+||.+|+++.+.
T Consensus        18 ~v~tv~~~~~v~~a~~~m~~~~~~~ipVvd--~~~~~vG~it~~Di~~~~~   66 (140)
T d2nyca1          18 NMKSCQMTTPVIDVIQMLTQGRVSSVPIID--ENGYLINVYEAYDVLGLIK   66 (140)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHHTCSEEEEEC--TTCBEEEEEEHHHHHHHHH
T ss_pred             CCEEEcCcCcHHHHHHHHHHcCCcEEEEEe--cCCeEcceehhhHHHHHHh
Confidence            489999999999999999999999999999  8899999999999998753

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.89  E-value=1.3e-09  Score=72.59  Aligned_cols=53  Identities=23%  Similarity=0.372  Sum_probs=47.0

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      |.++++++++++++.+|+++|.+++++.+||+|+ ++|+++||||.+||++++.
T Consensus       102 ~~~~~~~v~~~~~l~~v~~~m~~~~~~~v~Vvd~-~~g~~~GivT~~dilk~l~  154 (159)
T d2v8qe2         102 SFKPLVCISPNASLFDAVSSLIRNKIHRLPVIDP-ESGNTLYILTHKRILKFLK  154 (159)
T ss_dssp             SCCCCCCBCTTSBHHHHHHHHHHHTCSCEEEECT-TTCCEEEEECHHHHHHHHH
T ss_pred             eccceEEECCCCcHHHHHHHHHHhCCeEEEEEEC-CCCeEEEEEeHHHHHHHHH
Confidence            3445899999999999999999999999999973 3589999999999999864

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.87  E-value=2.3e-09  Score=72.65  Aligned_cols=61  Identities=18%  Similarity=0.158  Sum_probs=52.9

Q ss_pred             cccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           53 STTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      ..++.|+|....     .+++++++.++.+|++.|.+++++++||+|+ ++++++|++|.+|+++.+
T Consensus        19 ~~~~~dvm~~s~-----~vv~i~~~~~v~~A~~~m~~~~i~~lpVvd~-~~~~~vGiis~~Di~~~l   79 (179)
T d2ooxe1          19 SRTSYDVLPTSF-----RLIVFDVTLFVKTSLSLLTLNNIVSAPLWDS-EANKFAGLLTMADFVNVI   79 (179)
T ss_dssp             HSBHHHHSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSCEEEEET-TTTEEEEEECHHHHHHHH
T ss_pred             CCEeeeeCCCCC-----cEEEEECcchHHHHHHHHHHcCCCeEEEEeC-CCCeeEEEEeechHHHHH
Confidence            357999998642     2899999999999999999999999999983 258999999999998864

>d2v8qe2 d.37.1.1 (E:23-181) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.87  E-value=2.6e-09  Score=71.11  Aligned_cols=60  Identities=15%  Similarity=0.175  Sum_probs=52.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      .++.|+|....     ++++++++.++.+|++.|.+++++++||+++ ++++++|++|.+|++..+
T Consensus        13 ~t~~Dlm~~~~-----~vv~l~~~~sv~eA~~~l~~~~~~~~pVv~~-~~~~~vG~is~~Dl~~~~   72 (159)
T d2v8qe2          13 HRCYDLIPTSS-----KLVVFDTSLQVKKAFFALVTNGVRAAPLWDS-KKQSFVGMLTITDFINIL   72 (159)
T ss_dssp             SBGGGGSCSEE-----EEEEEETTSBHHHHHHHHHHHTCSEEEEEET-TTTEEEEEEEHHHHHHHH
T ss_pred             CEEEeECCCCC-----ceEEEcCCCcHHHHHHHHHHcCCCceeEEEC-CCCcEEEEEEHHHHHHHH
Confidence            47899997653     2899999999999999999999999999973 368999999999998764

>d2ooxe2 d.37.1.1 (E:182-334) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.84  E-value=1.8e-09  Score=71.89  Aligned_cols=49  Identities=14%  Similarity=0.351  Sum_probs=45.7

Q ss_pred             ceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           70 SWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        70 ~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      +++++.++.++.+|+++|.+++++++||+|  ++++++|+||.+|+++.+.
T Consensus        13 ~vv~v~~~~~v~~a~~~m~~~~~~~lpVvd--~~~~~vG~it~~Dl~~~~~   61 (153)
T d2ooxe2          13 NLATASMETKVYDVIKMLAEKNISAVPIVN--SEGTLLNVYESVDVMHLIQ   61 (153)
T ss_dssp             SCCCBCTTSBHHHHHHHHHHTTCSEEEEEC--GGGBEEEEEEHHHHHHHHG
T ss_pred             CCeEEeCcCcHHHHHHHHHHcCcceEeeec--ccceEEEEEEeeeeeehhc
Confidence            389999999999999999999999999998  7899999999999988753

>d2v8qe1 d.37.1.1 (E:182-326) 5'-AMP-activated protein kinase subunit gamma-1, AMPKg {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: 5'-AMP-activated protein kinase subunit gamma-1, AMPKg
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.81  E-value=3.2e-09  Score=69.79  Aligned_cols=61  Identities=23%  Similarity=0.288  Sum_probs=51.5

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .++++++....    .+++++.+++++.+|++.|.+++++++||++  ++|+++|+||.+|+++.+.
T Consensus         9 ~~l~~l~i~~~----~~v~~v~~~~tv~eal~~m~~~~~~~lpVvd--~~~~~~Gvit~~di~~~l~   69 (145)
T d2v8qe1           9 KSLEELQIGTY----ANIAMVRTTTPVYVALGIFVQHRVSALPVVD--EKGRVVDIYSKFDVINLAA   69 (145)
T ss_dssp             SBHHHHTCSBC----SSCCCEETTCBHHHHHHHHHHHCCSEEEEEC--TTSBEEEEEEGGGTGGGGG
T ss_pred             CCHHHHcCCCC----CCceEEcCcCcHHHHHHHHHHcCCCcccccc--cCCceEEEEEcchhhhhhh
Confidence            45777754321    1389999999999999999999999999998  8899999999999987653

>d2j9la1 d.37.1.1 (A:578-746) Chloride channel protein 5, ClC-5 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Chloride channel protein 5, ClC-5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=8.9e-09  Score=69.37  Aligned_cols=66  Identities=17%  Similarity=0.230  Sum_probs=51.9

Q ss_pred             cccHHHHhhhcCCCCCCc-eEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHhh
Q 033339           53 STTISDILKAKGKGADGS-WLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKACH  120 (121)
Q Consensus        53 ~~~v~dim~~~~~~~~~~-~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~~  120 (121)
                      .+.++|+|.+....  ++ .+++.++.|+.+|.++|.+++++.+||++++++++++|+||.+|++.++.
T Consensus         2 ~~~a~DiM~p~~~~--~~~~v~~~~~~tv~~a~~ll~~~~~~~~PVV~~~~~~~lvG~is~~dl~~~l~   68 (169)
T d2j9la1           2 KTLAMDVMKPRRND--PLLTVLTQDSMTVEDVETIISETTYSGFPVVVSRESQRLVGFVLRRDLIISIE   68 (169)
T ss_dssp             CCBHHHHSBSCTTS--CCCCCEESSCEEHHHHHHHHHHCCCSEEEEESCTTTCBEEEEEEHHHHHHHHH
T ss_pred             ccchhhhcCcCCCC--CceEEECCCcCCHHHHHHHHHHcCCCceeeeecCCCCeEEEEEEhHHHHHHHh
Confidence            35689999764220  11 24567888999999999999999999995436789999999999998763

>d1jr1a4 d.37.1.1 (A:113-232) Type II inosine monophosphate dehydrogenase CBS domains {Chinese hamster (Cricetulus griseus) [TaxId: 10029]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Type II inosine monophosphate dehydrogenase CBS domains
species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.73  E-value=6.4e-11  Score=76.56  Aligned_cols=52  Identities=19%  Similarity=0.215  Sum_probs=16.7

Q ss_pred             CCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCC-CCCeeEEEEeHHHHHHH
Q 033339           67 ADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPG-EQKSVAGIITERGIFKA  118 (121)
Q Consensus        67 ~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~-~~~~lvGiVt~~Di~~~  118 (121)
                      |+++++++++++++.+|+++|.+++++++||++++ .+++++|+||.+|+...
T Consensus         2 m~~~pvtv~~~~tl~da~~~m~~~~i~~~pVvd~~~~~~~lvGivT~~Di~~~   54 (120)
T d1jr1a4           2 FITDPVVLSPKDRVRDVFEAKARHGFCGIPITDTGRMGSRLVGIISSRDIDFL   54 (120)
T ss_dssp             EECTTCC----CCCC--CCBC---------------CTTCCC-----------
T ss_pred             cccCCEEECCcCCHHHHHHHHHHhCCCeEEEeeccccCCeEeeeeeeeeeeeh
Confidence            33457899999999999999999999999999731 15799999999998644

>d2ooxe1 d.37.1.1 (E:3-181) Uncharacterized protein C1556.08c {Schizosaccharomyces pombe [TaxId: 4896]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein C1556.08c
species: Schizosaccharomyces pombe [TaxId: 4896]

Probab=98.72  E-value=1.2e-08  Score=68.93  Aligned_cols=53  Identities=11%  Similarity=0.216  Sum_probs=45.6

Q ss_pred             CCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCC---CCeeEEEEeHHHHHHHhh
Q 033339           68 DGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGE---QKSVAGIITERGIFKACH  120 (121)
Q Consensus        68 ~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~---~~~lvGiVt~~Di~~~~~  120 (121)
                      .++++++.+++++.+|+..|.+++++.+||+|+..   .++++||+|.+||++.+.
T Consensus       114 ~~~~i~v~~~~sl~~~~~~m~~~~~~~lpVvd~~g~~~~~~vvgiiT~~dIlk~l~  169 (179)
T d2ooxe1         114 PPETIYVHPMHSLMDACLAMSKSRARRIPLIDVDGETGSEMIVSVLTQYRILKFIS  169 (179)
T ss_dssp             CSSCCCBCTTSBHHHHHHHHHHTTCSEEEEEEECTTTCCEEEEEEEEHHHHHHHHH
T ss_pred             ccCceEECCCCcHHHHHHHhhhcCceEEEEEecCCCcCCCcEEEEEeHHHHHHHHH
Confidence            34589999999999999999999999999998311   237999999999999874

>d3ddja2 d.37.1.1 (A:1-135) Uncharacterized protein SSO3205 {Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Uncharacterized protein SSO3205
species: Sulfolobus solfataricus [TaxId: 2287]

Probab=98.69  E-value=9e-09  Score=66.70  Aligned_cols=54  Identities=17%  Similarity=0.391  Sum_probs=48.7

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHHh
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKAC  119 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~~  119 (121)
                      +|+++|.++       ++++++++++.+|++.|.+++++++||+|    ++++|++|..|+++.+
T Consensus         2 ~V~~lM~~~-------~~~v~~~~tl~~a~~~m~~~~~~~l~V~d----~~lvg~~~~~~~~~~~   55 (135)
T d3ddja2           2 NIETLMIKN-------PPILSKEDRLGSAFKKINEGGIGRIIVAN----EKIEGLLTTRDLLSTV   55 (135)
T ss_dssp             SGGGTCEES-------CCEECTTSBHHHHHHHTTGGGCCEEEEES----SSEEEEEEHHHHHGGG
T ss_pred             EeeEEeeCC-------CeEECCCCcHHHHHHHHHHhCCeEEEEEe----cceeceeeccchhhhh
Confidence            578899876       78999999999999999999999999996    3699999999998765

>d2yvxa2 d.37.1.1 (A:132-275) Magnesium transporter MgtE {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Thermus thermophilus [TaxId: 274]

Probab=98.61  E-value=2.8e-09  Score=70.65  Aligned_cols=55  Identities=15%  Similarity=0.294  Sum_probs=48.0

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcC-----CCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHN-----VGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~-----~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++..+|+++       ++++++++|+.+|++.|.+++     +..+||+|  ++|+++|+++.+|+...
T Consensus         2 taG~iM~~~-------~itv~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd--~~~~l~G~v~~~dl~~~   61 (144)
T d2yvxa2           2 EAGGLMTPE-------YVAVREGMTVEEVLRFLRRAAPDAETIYYIYVVD--EKGRLKGVLSLRDLIVA   61 (144)
T ss_dssp             SSGGGCBSC-------CCEECSSCBHHHHHHHSSSSCTTSSCSSBCEEBC--TTCBBCCBCBHHHHTTS
T ss_pred             CcccccCCC-------CEEECCCCcHHHHHHHHHHhcccccceeeeEEec--CCCCEecccchhhhhhc
Confidence            356677775       999999999999999998774     78999999  89999999999998754

>d2ouxa2 d.37.1.1 (A:136-262) Magnesium transporter MgtE {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a+b)
fold: CBS-domain pair
superfamily: CBS-domain pair
family: CBS-domain pair
domain: Magnesium transporter MgtE
species: Enterococcus faecalis [TaxId: 1351]

Probab=98.59  E-value=5.6e-08  Score=62.82  Aligned_cols=55  Identities=18%  Similarity=0.340  Sum_probs=48.8

Q ss_pred             cHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhc-----CCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           55 TISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQH-----NVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        55 ~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~-----~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ++..+|++.       +++++++.|+.+|++.|.++     ++..+||+|  ++++++|+++.+++..+
T Consensus         2 taG~iM~~d-------~i~v~~~~tv~ea~~~m~~~~~~~~~~~~~~Vvd--~~~~l~G~v~~~~l~~~   61 (127)
T d2ouxa2           2 TAGAIMTTE-------FVSIVANQTVRSAMYVLKNQADMAETIYYVYVVD--QENHLVGVISLRDLIVN   61 (127)
T ss_dssp             BHHHHCBSC-------CCEECSSSBHHHHHHHHHHHCSSCSCCSEEEEEC--TTCBEEEEEEHHHHTTS
T ss_pred             ChhHhCCCC-------cEEECCCCcHHHHHHHhHhhcccccceeeeEEEe--cCCeEEEEEEeeccccc
Confidence            577888886       99999999999999999887     478999999  89999999999998653

>d1lkvx_ a.118.14.1 (X:) FliG {Thermotoga maritima [TaxId: 2336]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: FliG
family: FliG
domain: FliG
species: Thermotoga maritima [TaxId: 2336]

Probab=91.25  E-value=0.00069  Score=45.96  Aligned_cols=56  Identities=9%  Similarity=0.052  Sum_probs=48.2

Q ss_pred             ccHHHHhhhcCCCCCCceEEEcCCCcHHHHHHHHHhcCCCEEEEEeCCCCCeeEEEEeHHHHHHH
Q 033339           54 TTISDILKAKGKGADGSWLWCTTDDTVYDAVKSMTQHNVGALVVVKPGEQKSVAGIITERGIFKA  118 (121)
Q Consensus        54 ~~v~dim~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lpVvd~~~~~~lvGiVt~~Di~~~  118 (121)
                      ..+++++...       +.++..+.+.+++.+.|..+.....||++  ++++++|.||.+|+..+
T Consensus       137 ~~l~~i~~~~-------~~~a~~~~~~e~~~~~l~~~~~~~~~vv~--~e~~~~G~I~~~Die~A  192 (213)
T d1lkvx_         137 LVLREVDTRD-------LALALKGASDELKEKIFKNMSKRAAALLK--DELEYMGPVRLKDVEEA  192 (213)
T ss_dssp             HHHTTSCHHH-------HHHHHTTCCHHHHHHHHTTSCHHHHHHHH--HHHHSCCCCCHHHHHHH
T ss_pred             HHHHHhhhhh-------heeehhcCCHHHHHHHHHhCCHHHHHHHH--HhhhhcCCCcHHHHHHH
Confidence            3456677665       77888999999999999999999999999  78999999999997554