Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
ID Alignment Graph Length
Definition
E-value Query 112
TIGR01160 110
TIGR01160, SUI1_MOF2, translation initiation facto
6e-46 cd11566 84
cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
2e-41 pfam01253 74
pfam01253, SUI1, Translation initiation factor SUI
4e-19 COG0023 104
COG0023, SUI1, Translation initiation factor 1 (eI
3e-18 cd00474 78
cd00474, eIF1_SUI1_like, Eukaryotic initiation fac
5e-16 cd11607 86
cd11607, DENR_C, C-terminal domain of DENR and rel
1e-08 TIGR01158 101
TIGR01158, SUI1_rel, translation initation factor
4e-07 PRK00939 99
PRK00939, PRK00939, translation initiation factor
3e-06 cd11567 76
cd11567, YciH_like, Homologs of eIF1/SUI1 includin
9e-05 cd11608 85
cd11608, eIF2D_C, C-terminal domain of eIF2D and r
1e-04
>gnl|CDD|130228 TIGR01160, SUI1_MOF2, translation initiation factor SUI1, eukaryotic
Back Hide alignment and domain information
Score = 143 bits (362), Expect = 6e-46
Identities = 62/110 (56%), Positives = 79/110 (71%), Gaps = 2/110 (1%)
Query: 5 DSQIPTSYDPFADI--KDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDL 62
Q S+DPFAD DS PG Y+H+R+QQRNG+K LTTVQGL +++ +KI+K L
Sbjct: 1 SIQNLKSFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKAL 60
Query: 63 KKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112
KKEF CNG V+ D +G+VIQLQGD RKNV FL+ ++ KD+IKIHGF
Sbjct: 61 KKEFACNGTVIEDPEMGEVIQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation [Protein synthesis, Translation factors]. Length = 110
>gnl|CDD|211318 cd11566, eIF1_SUI1, Eukaryotic initiation factor 1
Back Show alignment and domain information
Score = 131 bits (331), Expect = 2e-41
Identities = 53/84 (63%), Positives = 64/84 (76%)
Query: 28 GYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
GY+H+R+QQRNG+K LTTVQGL E+F +KILK KKEF CNG VV D G+VIQLQGD
Sbjct: 1 GYIHIRIQQRNGRKTLTTVQGLPEEFDLKKILKAFKKEFACNGTVVEDPEYGEVIQLQGD 60
Query: 88 HRKNVMIFLVKSKIVDKDRIKIHG 111
RKN+ FL++ I KD IK+HG
Sbjct: 61 QRKNIKEFLLEEGIAKKDNIKVHG 84
eIF1/SUI1 (eukaryotic initiation factor 1) plays an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. Length = 84
>gnl|CDD|216391 pfam01253, SUI1, Translation initiation factor SUI1
Back Show alignment and domain information
Score = 74.1 bits (183), Expect = 4e-19
Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 7/77 (9%)
Query: 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGY--QKILKDLKKEFCCNGNVVNDKVLGKV 81
+ + +R ++R G K +T V GL E FG +K+ K+LKK+F C G V + G+
Sbjct: 1 KKEDQKIRIRREKRRGGKTVTVVTGL-ELFGIDLKKLAKELKKKFGCGGTVKD----GEE 55
Query: 82 IQLQGDHRKNVMIFLVK 98
I++QGDHR V L K
Sbjct: 56 IEIQGDHRDKVKDLLEK 72
>gnl|CDD|223102 COG0023, SUI1, Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Score = 72.7 bits (179), Expect = 3e-18
Identities = 30/107 (28%), Positives = 46/107 (42%), Gaps = 7/107 (6%)
Query: 5 DSQIPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLK 63
+ P + +A V +R + R K +T ++GL D +K+ K+LK
Sbjct: 4 STICGRIGLPKELTCEEVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELK 63
Query: 64 KEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110
K+ C G V + I++QGDHR V L+K K I I
Sbjct: 64 KKCACGGTVKDG-----EIEIQGDHRDKVKELLIK-KGFKVKNIGIE 104
>gnl|CDD|211317 cd00474, eIF1_SUI1_like, Eukaryotic initiation factor 1 and related proteins
Back Show alignment and domain information
Score = 66.7 bits (163), Expect = 5e-16
Identities = 28/81 (34%), Positives = 51/81 (62%), Gaps = 4/81 (4%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR 89
+H++V+QR+G K +T V+GL +K+ +LKK+ C G+V +K I++QGDH
Sbjct: 2 IHIKVEQRSGGKKVTKVEGLPAYIDLRKLADELKKKLGCGGSVEGEK---MEIEIQGDHT 58
Query: 90 KNVMIFLVKSKIVDKDRIKIH 110
+++ L + K +DKD +++
Sbjct: 59 DQIIVAL-EEKGIDKDWVELL 78
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. eIF1 interacts with 18S rRNA in the 40S ribosomal subunit during eukaryotic translation initiation. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown. The function of non-eukaryotic family members is also unclear. Length = 78
>gnl|CDD|211320 cd11607, DENR_C, C-terminal domain of DENR and related proteins
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Score = 47.9 bits (115), Expect = 1e-08
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFG--YQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD 87
V ++ RN +K +TTV GL E FG +K K K+F C +V I +QGD
Sbjct: 3 VTIKRISRNKRKFVTTVTGL-ETFGIDLKKAAKLFAKKFACGASVTKGAEGKDEIVIQGD 61
Query: 88 HRKNVMIFLV-KSKIVDKDRIKI 109
+++ ++ K +D+D I+I
Sbjct: 62 VTDDIVDLILEKWPEIDEDNIEI 84
DENR (density regulated protein), together with MCT-1 (multiple copies T cell malignancies), has been shown to have similar function as eIF2D translation initiation factor (also known as ligatin), which is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 86
>gnl|CDD|130226 TIGR01158, SUI1_rel, translation initation factor SUI1, putative, prokaryotic
Back Show alignment and domain information
Score = 44.3 bits (105), Expect = 4e-07
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 19 KDSLAPGDKGYVHLRVQQRNGK-KCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDK 76
++ P + V ++ + R K K +T ++GL D +++ K+LK + C G V +
Sbjct: 15 EEVAKPKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKDG- 73
Query: 77 VLGKVIQLQGDHRKNVMIFLVK 98
VI++QGDHR V L K
Sbjct: 74 ----VIEIQGDHRDRVKDLLEK 91
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met [Protein synthesis, Translation factors]. Length = 101
>gnl|CDD|179173 PRK00939, PRK00939, translation initiation factor Sui1; Reviewed
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Score = 41.8 bits (99), Expect = 3e-06
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
+ ++V +R K +T ++G+ D +++ K LK + C G V + + I+LQGDH
Sbjct: 26 IKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKDGR-----IELQGDH 80
Query: 89 RKNVMIFLVK 98
R+ V L+K
Sbjct: 81 RERVKELLIK 90
>gnl|CDD|211319 cd11567, YciH_like, Homologs of eIF1/SUI1 including Escherichia coli YciH
Back Show alignment and domain information
Score = 37.5 bits (88), Expect = 9e-05
Identities = 24/70 (34%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 30 VHLRVQQRNGKKCLTTVQGLK-EDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH 88
V L + R GK +T ++GL + +++ K+LKK+ C G V + I+LQGDH
Sbjct: 5 VRLEKRGRGGKT-VTVIEGLPLSEEDLKELAKELKKKCGCGGTVKDG-----EIELQGDH 58
Query: 89 RKNVMIFLVK 98
R+ + L K
Sbjct: 59 REKIKELLEK 68
Members of the eIF1/SUI1 (eukaryotic initiation factor 1) family are found in eukaryotes, archaea, and some bacteria; eukaryotic members are understood to play an important role in accurate initiator codon recognition during translation initiation. The function of non-eukaryotic family members is unclear. Escherichia coli YciH is a non-essential protein and was reported to be able to perform some of the functions of IF3 in prokaryotic initiation. Length = 76
>gnl|CDD|211321 cd11608, eIF2D_C, C-terminal domain of eIF2D and related proteins
Back Show alignment and domain information
Score = 37.5 bits (88), Expect = 1e-04
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 30 VHLRVQQRNGKKCLTTVQGLKEDFGY--QKILKDLKKEFCCNGNVVNDKVLGK--VIQLQ 85
+ + ++R G K +T + GL E FG ++ K+L+K+ + +V K +Q+Q
Sbjct: 2 IDITTERRQGNKKVTLISGL-ESFGIDPEEFAKELQKKCAASTSVSPLPGKKKGVEVQVQ 60
Query: 86 GDHRKNVMIFLVKSKIVDK 104
G+ K V L + V K
Sbjct: 61 GNQVKFVAKLLTEKYGVPK 79
eIF2D translation initiation factor (also known as ligatin) is involved in the recruitment and delivery of aminoacyl-tRNAs to the P-site of the eukaryotic ribosome in a GTP-independent manner. Length = 85
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
112
KOG1770 112
consensus Translation initiation factor 1 (eIF-1/S
100.0 TIGR01160 110
SUI1_MOF2 translation initiation factor SUI1, euka
100.0 COG0023 104
SUI1 Translation initiation factor 1 (eIF-1/SUI1)
99.96 cd00474 77
SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation fac
99.96 PF01253 83
SUI1: Translation initiation factor SUI1; InterPro
99.95 PRK00939 99
translation initiation factor Sui1; Reviewed
99.94 TIGR01158 101
SUI1_rel translation initation factor SUI1, putati
99.92 TIGR01159 173
DRP1 density-regulated protein DRP1. This protein
99.91 PRK09019 108
translation initiation factor Sui1; Validated
99.9 PRK07451 115
translation initiation factor Sui1; Validated
99.9 PRK06824 118
translation initiation factor Sui1; Validated
99.9 KOG3239 193
consensus Density-regulated protein related to tra
99.73 KOG2522 560
consensus Filamentous baseplate protein Ligatin, c
99.55 PF05046 87
Img2: Mitochondrial large subunit ribosomal protei
98.16 KOG4034 169
consensus Uncharacterized conserved protein NOF (N
96.59 PRK14451 89
acylphosphatase; Provisional
93.51 PRK03988 138
translation initiation factor IF-2 subunit beta; V
93.12 TIGR00311 133
aIF-2beta translation initiation factor aIF-2, bet
92.03 PRK14425 94
acylphosphatase; Provisional
90.66 PRK14450 91
acylphosphatase; Provisional
90.65 PRK14439 163
acylphosphatase; Provisional
90.55 PRK14436 91
acylphosphatase; Provisional
90.46 PRK14434 92
acylphosphatase; Provisional
90.27 PRK14446 88
acylphosphatase; Provisional
90.22 PRK14443 93
acylphosphatase; Provisional
89.98 PRK14442 91
acylphosphatase; Provisional
89.9 PRK14444 92
acylphosphatase; Provisional
89.75 PRK14435 90
acylphosphatase; Provisional
89.63 PRK14437 109
acylphosphatase; Provisional
89.51 PRK14428 97
acylphosphatase; Provisional
89.47 PRK14448 90
acylphosphatase; Provisional
89.28 smart00653 110
eIF2B_5 domain present in translation initiation f
89.24 PRK14421 99
acylphosphatase; Provisional
89.2 PF00708 91
Acylphosphatase: Acylphosphatase; InterPro: IPR001
88.8 PRK14438 91
acylphosphatase; Provisional
88.7 PRK12336 201
translation initiation factor IF-2 subunit beta; P
88.46 PRK14426 92
acylphosphatase; Provisional
88.2 PRK14449 90
acylphosphatase; Provisional
87.57 PRK14433 87
acylphosphatase; Provisional
87.5 PRK14430 92
acylphosphatase; Provisional
87.38 PRK14423 92
acylphosphatase; Provisional
87.32 PRK14445 91
acylphosphatase; Provisional
87.18 PRK14424 94
acylphosphatase; Provisional
86.96 PRK14420 91
acylphosphatase; Provisional
86.89 PRK14441 93
acylphosphatase; Provisional
86.79 PRK14447 95
acylphosphatase; Provisional
86.47 PRK14440 90
acylphosphatase; Provisional
85.95 PRK14422 93
acylphosphatase; Provisional
85.6 PRK14452 107
acylphosphatase; Provisional
84.95 PRK14432 93
acylphosphatase; Provisional
84.02 PRK14429 90
acylphosphatase; Provisional
83.52 PRK14427 94
acylphosphatase; Provisional
83.36 PRK14431 89
acylphosphatase; Provisional
82.49
>KOG1770 consensus Translation initiation factor 1 (eIF-1/SUI1) [Translation, ribosomal structure and biogenesis]
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Probab=100.00 E-value=6.1e-39 Score=220.89 Aligned_cols=110 Identities=55% Similarity=0.896 Sum_probs=104.3
Q ss_pred CCcccccCCCCCCCCcCCcCCC--CCCCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCC
Q 033744 1 MVDIDSQIPTSYDPFADIKDSL--APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVL 78 (112)
Q Consensus 1 ~~~~~~~~~~~~dpf~~~~~~~--~~~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~ 78 (112)
|++++++ .+||||+++.+++ .++..+.||||+|+|+|||++|+|+||+.++|++++++.|||.|||+|+|.++|++
T Consensus 1 e~~iq~~--~~~dpfad~~~~~~~~~g~~~~ihIRIQQRnGrKtlTtVQgi~~Eyd~kril~~lKKef~CnGtvved~e~ 78 (112)
T KOG1770|consen 1 EHIIQNL--EDFDPFADARAGEDDIAGTEKYIHIRIQQRNGRKTLTTVQGIPMEYDLKKILKSLKKEFACNGTVVEDPEY 78 (112)
T ss_pred Cccccch--hhcCcccccccccccccCccceEEEEEEeeCCceEEEEecCChhhhhHHHHHHHHHHhccCCCeEecCccc
Confidence 6777775 5999999998873 67888899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 79 GKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 79 g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
|++|+||||||.++.+||...|++.+.+|+||||
T Consensus 79 gevIQLqGDqR~nv~~fl~~~g~~k~~~ikihGf 112 (112)
T KOG1770|consen 79 GEVIQLQGDQRKNVCQFLVQVGLVKKDNIKIHGF 112 (112)
T ss_pred CceEEeccchhhhHHHHHHHhccccccceeecCC
Confidence 9999999999999999999999999999999998
>TIGR01160 SUI1_MOF2 translation initiation factor SUI1, eukaryotic
Back Show alignment and domain information
Probab=100.00 E-value=2.9e-38 Score=220.15 Aligned_cols=107 Identities=56% Similarity=0.966 Sum_probs=97.4
Q ss_pred ccccCCCCCCCCcCCcCCCCC--CCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeE
Q 033744 4 IDSQIPTSYDPFADIKDSLAP--GDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKV 81 (112)
Q Consensus 4 ~~~~~~~~~dpf~~~~~~~~~--~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~ 81 (112)
++++ .+||||+++.+++-. ...+.||||+++|+|||.||+|+||+..+|+++|+|.||++|||||||+++++++++
T Consensus 2 ~~~~--~~~dpf~d~~~~~~~~~~~~~~I~Iri~qR~grK~VTiI~Gl~~~~dlk~l~K~lKkk~~cGGsVk~~~~~~~~ 79 (110)
T TIGR01160 2 IQNL--KSFDPFADAGDDDSALPGTSNYIHIRIQQRNGRKTLTTVQGLPKEYDLKKIVKALKKEFACNGTVIEDPEMGEV 79 (110)
T ss_pred cccc--cCCCCccccccccccccCccceEEEEEEEccCCccEEEEeccCChHHHHHHHHHHHHHhCCCceEEeCCCCCCE
Confidence 4565 489999998665521 457789999999999999999999998999999999999999999999998888899
Q ss_pred EEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 82 IQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 82 I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
|+||||||++|++||.++||+++++|++|||
T Consensus 80 IelQGD~re~v~~~L~~~g~~~~~~i~vhg~ 110 (110)
T TIGR01160 80 IQLQGDQRKNVCEFLISQGLLKKDQIKIHGF 110 (110)
T ss_pred EEEeCcHHHHHHHHHHHcCCCCHHHeeecCC
Confidence 9999999999999999999999999999997
Alternate name: MOF2. A similar protein family (see TIGRFAMs model TIGR01158) is found in prokaryotes. The human proteins complements a yeast SUI1 mutatation.
>COG0023 SUI1 Translation initiation factor 1 (eIF-1/SUI1) and related proteins [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.96 E-value=5.1e-30 Score=177.01 Aligned_cols=102 Identities=29% Similarity=0.412 Sum_probs=87.4
Q ss_pred CCcccccCCCCCCCCcCCcCCCCCCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCC
Q 033744 1 MVDIDSQIPTSYDPFADIKDSLAPGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLG 79 (112)
Q Consensus 1 ~~~~~~~~~~~~dpf~~~~~~~~~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g 79 (112)
|++.+.. ...+|++...+...+...+.|+|++++|++||.||+|+||+. ++|+++||+.||++|||||||++
T Consensus 2 ~~~~~~~--~~~~p~e~~~~~~~k~~~~~V~I~~e~rr~gK~VTiI~Gld~~~~dlk~Lak~LKk~cacGGtvk~----- 74 (104)
T COG0023 2 MYSTICG--RIGLPKELTCEEVAKEGDQIVRIRRETRRKGKTVTIIEGLDLKDIDLKKLAKELKKKCACGGTVKD----- 74 (104)
T ss_pred cccccCC--CCCCchHHhhhhcccccCCeEEEEEEeecCCcEEEEEeCcccchhhHHHHHHHHHHHcCCCceecC-----
Confidence 3444443 246787776333334558999999999999999999999999 99999999999999999999985
Q ss_pred eEEEEcCchhHHHHHHHHhCCCCCCCCeEEc
Q 033744 80 KVIQLQGDHRKNVMIFLVKSKIVDKDRIKIH 110 (112)
Q Consensus 80 ~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ih 110 (112)
.+|+||||||++|.+||.++|| +.++|.+|
T Consensus 75 ~~IeiQGdhr~~v~~~L~~~G~-k~k~i~~~ 104 (104)
T COG0023 75 GEIEIQGDHRDKVKELLIKKGF-KVKNIGIE 104 (104)
T ss_pred CEEEEeChHHHHHHHHHHHcCC-chhhcccC
Confidence 5999999999999999999999 99999875
>cd00474 SUI1_eIF1 The SUI1/eIF1 (eukaryotic initiation factor 1) fold is found in eukaryotes, archaea, and some bacteria and is thought to play an important role in accurate initiator codon recognition during translation initiation
Back Show alignment and domain information
Probab=99.96 E-value=1.4e-28 Score=161.91 Aligned_cols=76 Identities=51% Similarity=0.773 Sum_probs=72.0
Q ss_pred eEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCCCCCe
Q 033744 29 YVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRI 107 (112)
Q Consensus 29 ~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I 107 (112)
.|+|++++|++||.||+|+||+. .+|++++||.||++|||||||++ .+|+||||||++|++||.++|| ++++|
T Consensus 1 ~V~I~~e~R~~~K~VT~I~Gl~~~~~dlk~l~k~lKk~~~cggtv~~-----~~I~lQGD~r~~v~~~L~~~g~-~~~~i 74 (77)
T cd00474 1 VVRIRIQQRNGGKTVTTVQGLDLEYADLKKLAKELKKKCACGGTVKD-----EVIELQGDQRKKIKEFLIKMGF-AKDNI 74 (77)
T ss_pred CEEEEEEECCCCccEEEEECCCCchHhHHHHHHHHHHHcCCCcEEec-----CEEEEeCcHHHHHHHHHHHcCC-CHHHe
Confidence 38999999999999999999999 78999999999999999999984 6999999999999999999999 55999
Q ss_pred EEc
Q 033744 108 KIH 110 (112)
Q Consensus 108 ~ih 110 (112)
+||
T Consensus 75 ~i~ 77 (77)
T cd00474 75 KIH 77 (77)
T ss_pred EeC
Confidence 998
This fold, which includes two antiparallel alpha helices packed against the same side of a five-strand beta sheet, is structurally similar to other RNA-binding domains suggesting that SUI1/eIF1 may bind RNA. Point mutations in the yeast eIF1 implicate the protein in maintaining accurate start-site selection but its mechanism of action is unknown.
>PF01253 SUI1: Translation initiation factor SUI1; InterPro: IPR001950 In Saccharomyces cerevisiae (Baker's yeast), SUI1 is a translation initiation factor that functions in concert with eIF-2 and the initiator tRNA-Met in directing the ribosome to the proper start site of translation []
Back Show alignment and domain information
Probab=99.95 E-value=3.6e-27 Score=156.08 Aligned_cols=80 Identities=38% Similarity=0.652 Sum_probs=69.2
Q ss_pred CCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCC
Q 033744 25 GDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVD 103 (112)
Q Consensus 25 ~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~ 103 (112)
++.++|+|++++|+|||+||+|+||+. ++|+++||++|+++|||||||.++|+.+.+|+|||||+++|.++|.++|++|
T Consensus 2 ~~~~~I~I~~e~r~~~K~vT~V~gl~~~~~d~~~lak~lkk~~ac~~sv~~~~~k~~~I~iQGd~~~~i~~~L~~~~~~~ 81 (83)
T PF01253_consen 2 KEPPKIHIRVEKRRGRKFVTIVSGLELFGIDLKELAKELKKKFACGGSVTKDPGKGEEIQIQGDHRDEIKDLLVEKGGIP 81 (83)
T ss_dssp S-TTCEEEEEEESSSSEEEEEEES--STTSHHHHHHHHHHHHHTS-EEEEE-TTTSSEEEEESS-HHHHHHHHHHHCSSE
T ss_pred CCCCEEEEEEEeCcCCeEEEEEECCcccccCHHHHHHHHHHhccCceEEeecCCCCCEEEECCcHHHHHHHHHHHhCCCC
Confidence 577899999999999999999999998 9999999999999999999999888667899999999999999999999855
Q ss_pred C
Q 033744 104 K 104 (112)
Q Consensus 104 ~ 104 (112)
+
T Consensus 82 k 82 (83)
T PF01253_consen 82 K 82 (83)
T ss_dssp -
T ss_pred C
Confidence 4
SUI1 is a protein of 108 residues. Close homologs of SUI1 have been found [] in mammals, insects and plants. SUI1 is also evolutionary related to hypothetical proteins from Escherichia coli (yciH), Haemophilus influenzae (HI1225) and Methanococcus vannielii.; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 2OGH_A 1D1R_A 2IF1_A 2XZN_F 2XZM_F.
>PRK00939 translation initiation factor Sui1; Reviewed
Back Show alignment and domain information
Probab=99.94 E-value=3.1e-26 Score=157.06 Aligned_cols=79 Identities=29% Similarity=0.566 Sum_probs=73.5
Q ss_pred CCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCC
Q 033744 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIV 102 (112)
Q Consensus 24 ~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~ 102 (112)
+.+.+.|+|++++|+|||+||+|+||+. ++|+++++|.||++|||||||++ .+|+||||||++|++||.++||
T Consensus 20 ~~~~~~i~I~~ekr~~gK~VTiI~Gl~~~~~~lk~l~k~lKk~~gcGgsvk~-----~~I~iQGD~r~~v~~~L~~~G~- 93 (99)
T PRK00939 20 AKEQQRIKIKVDKRRYGKEVTIIEGIDPKDIDLKELAKKLKSKLACGGTVKD-----GRIELQGDHRERVKELLIKMGF- 93 (99)
T ss_pred CccCceEEEEEEecCCCceEEEEeCCCCcchhHHHHHHHHHHHhCCCceEEC-----CEEEEeCcHHHHHHHHHHHcCC-
Confidence 3456899999999999999999999998 99999999999999999999974 5799999999999999999999
Q ss_pred CCCCeE
Q 033744 103 DKDRIK 108 (112)
Q Consensus 103 ~~~~I~ 108 (112)
|.+||+
T Consensus 94 ~~~~i~ 99 (99)
T PRK00939 94 SEENIE 99 (99)
T ss_pred ChhhcC
Confidence 988874
>TIGR01158 SUI1_rel translation initation factor SUI1, putative, prokaryotic
Back Show alignment and domain information
Probab=99.92 E-value=1.6e-24 Score=148.93 Aligned_cols=78 Identities=32% Similarity=0.530 Sum_probs=72.0
Q ss_pred CCCCceEEEEEEEe-cCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 24 PGDKGYVHLRVQQR-NGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 24 ~~~~~~I~I~~~~R-~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
+.+.+.|+|++++| +++|.||+|+||+. ..|+++++|.||++||||||+++ .+|+|||||+++|.++|.++||
T Consensus 20 ~~~~~~i~i~~e~rgr~gK~VTvV~Gl~~~~~~l~~l~k~LKk~~gcGgtvk~-----~~IeiQGD~~~~v~~~L~~~G~ 94 (101)
T TIGR01158 20 PKEDQVVRIQRETRGRKGKGVTIIEGLDLSDIDLKELAKELKSKCGCGGTVKD-----GVIEIQGDHRDRVKDLLEKKGF 94 (101)
T ss_pred CCCCceEEEEEEEecCCCCEEEEEeCCcCchhhHHHHHHHHHHHhcCCeeEeC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 45889999999998 89999999999998 89999999999999999999973 6899999999999999999999
Q ss_pred CCCCCe
Q 033744 102 VDKDRI 107 (112)
Q Consensus 102 ~~~~~I 107 (112)
+..++
T Consensus 95 -~~k~~ 99 (101)
T TIGR01158 95 -KVKLI 99 (101)
T ss_pred -Ceeec
Confidence 76654
This family of archaeal and bacterial proteins is homologous to the eukaryotic translation intiation factor SUI1 involved in directing the ribosome to the proper start site of translation by functioning in concert with eIF-2 and the initiator tRNA-Met.
>TIGR01159 DRP1 density-regulated protein DRP1
Back Show alignment and domain information
Probab=99.91 E-value=2.2e-24 Score=160.50 Aligned_cols=85 Identities=20% Similarity=0.304 Sum_probs=79.3
Q ss_pred CCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC--C
Q 033744 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS--K 100 (112)
Q Consensus 24 ~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~--G 100 (112)
.+.+++|+|++++|++||.||+|+||+. ++|+++++|.|+++||||+||.+.+.++.+|+|||||+++|.++|.++ .
T Consensus 85 K~~~~~V~I~~~~R~krK~VT~V~GLe~f~idlk~laK~lkkkfacG~SV~k~~~~~~eI~IQGD~~~~v~e~L~~~~~~ 164 (173)
T TIGR01159 85 KKLPQKVTIKREPRTKRKFVTVIKGLETFDIDLKKASKTFAQKFATGCSVSKSVTGKEEIVIQGDVMDDIEDYIHEKWPE 164 (173)
T ss_pred cCCCCeEEEEEEecCCCceEEEEeCCcCCCcCHHHHHHHHHHHhCCCCccccCCCCCCEEEecCCHHHHHHHHHHHHcCC
Confidence 4578899999999999999999999999 999999999999999999999988888889999999999999999998 5
Q ss_pred CCCCCCeEE
Q 033744 101 IVDKDRIKI 109 (112)
Q Consensus 101 ~~~~~~I~i 109 (112)
+ |+++|+.
T Consensus 165 v-~e~~I~~ 172 (173)
T TIGR01159 165 V-GDKDIKD 172 (173)
T ss_pred C-CHHHeee
Confidence 5 8888874
This protein family shows weak but suggestive similarity to translation initiation factor SUI1 and its prokaryotic homologs.
>PRK09019 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=1.7e-23 Score=145.46 Aligned_cols=74 Identities=30% Similarity=0.468 Sum_probs=66.7
Q ss_pred CCCCCceEEEEEEE-ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCC
Q 033744 23 APGDKGYVHLRVQQ-RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSK 100 (112)
Q Consensus 23 ~~~~~~~I~I~~~~-R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G 100 (112)
++...+.|+|+.++ ++++|.||+|+||+. +.|+++|+|.||++|||||||++ .+|+||||||++|.+||.++|
T Consensus 26 ~~~~~~~vri~~~r~gRkGK~VTiI~Gl~~~~~dlk~l~K~lKkk~gcGGtvk~-----~~IelQGD~r~~v~~~L~~~G 100 (108)
T PRK09019 26 RPKGDGIVRIQRQTSGRKGKGVCLITGLDLDDAELKKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKG 100 (108)
T ss_pred CCCcCceEEEEEecCCCCCCeEEEEeCCcCCHHHHHHHHHHHHHHhcCCCeEEc-----CEEEEcCcHHHHHHHHHHHCC
Confidence 45577788888774 457789999999997 99999999999999999999984 689999999999999999999
Q ss_pred C
Q 033744 101 I 101 (112)
Q Consensus 101 ~ 101 (112)
|
T Consensus 101 f 101 (108)
T PRK09019 101 M 101 (108)
T ss_pred C
Confidence 9
>PRK07451 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=2.9e-23 Score=145.68 Aligned_cols=74 Identities=26% Similarity=0.463 Sum_probs=66.7
Q ss_pred CCCCCceEEEEEEE-ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCC
Q 033744 23 APGDKGYVHLRVQQ-RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSK 100 (112)
Q Consensus 23 ~~~~~~~I~I~~~~-R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G 100 (112)
++.+.+.|+|++++ ++++|.||+|+||+. +.|+++|+|.||++||||||+++ .+|+||||||++|.+||.++|
T Consensus 33 ~~~~~~~irI~~~r~gR~GK~VTvV~Gl~~~~~dlk~LaK~LK~k~gcGGtvkd-----~~IelQGD~r~~v~~~L~~~G 107 (115)
T PRK07451 33 LPPQQQNLRVQATRSGRKGKTVTVITGFQHKPETLAKLLKQLKTQCGSGGTVKD-----NTIEIQGDHRQKILEILIKLG 107 (115)
T ss_pred CCccceeEEEEEEecCCCCCeEEEEeCCCCCHHHHHHHHHHHHHHhcCCceEcC-----CEEEEcCcHHHHHHHHHHHCC
Confidence 55677788888764 557799999999998 89999999999999999999974 689999999999999999999
Q ss_pred C
Q 033744 101 I 101 (112)
Q Consensus 101 ~ 101 (112)
|
T Consensus 108 f 108 (115)
T PRK07451 108 Y 108 (115)
T ss_pred C
Confidence 9
>PRK06824 translation initiation factor Sui1; Validated
Back Show alignment and domain information
Probab=99.90 E-value=2.4e-23 Score=146.71 Aligned_cols=73 Identities=27% Similarity=0.485 Sum_probs=66.9
Q ss_pred CCCCceEEEEEEE-ecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 24 PGDKGYVHLRVQQ-RNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 24 ~~~~~~I~I~~~~-R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
+...+.|+|++++ |+++|.||+|+||+. +.|+++|+|.||++|||||||++ ++|+||||||++|++||.++||
T Consensus 37 ~~~~~~vri~~~~kgr~gK~VTvI~Gl~~~~~dlk~l~K~LKkk~gcGGtvkd-----~~IeiQGD~r~~v~~~L~~~G~ 111 (118)
T PRK06824 37 PAGDGIVRVRRETKGRGGKTVTVITGVPLAEDALKELAKELKRRCGTGGTLKD-----GVIEIQGDHVELLLAELLKRGF 111 (118)
T ss_pred CCcCceEEEEEEEccCCCceEEEEeCCcCCHHHHHHHHHHHHHHhcCCceEec-----CEEEEcCcHHHHHHHHHHHCCC
Confidence 3456699998885 579999999999997 99999999999999999999984 6999999999999999999999
>KOG3239 consensus Density-regulated protein related to translation initiation factor 1 (eIF-1/SUI1) [General function prediction only]
Back Show alignment and domain information
Probab=99.73 E-value=1.5e-17 Score=123.84 Aligned_cols=85 Identities=25% Similarity=0.380 Sum_probs=76.7
Q ss_pred CCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC-CCC
Q 033744 25 GDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS-KIV 102 (112)
Q Consensus 25 ~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~-G~~ 102 (112)
+-+++|.|..+.|+.||+||+|+||+. ++|+++++|.|.++||||+||++.++..++|.||||..+.|.+|+.++ --+
T Consensus 98 ~~pqkV~I~r~~R~KrK~VT~V~GL~~FdIdlk~aaK~fa~KFAtGaSVtk~a~kkdEIvIQGDv~dDi~d~I~ekw~ev 177 (193)
T KOG3239|consen 98 RLPQKVIIKREARTKRKSVTVVKGLETFDIDLKKAAKFFAQKFATGASVTKNAEKKDEIVIQGDVKDDIFDFIPEKWPEV 177 (193)
T ss_pred cCCceeEeeecccCCceeEEEEechhhccccHHHHHHHHHHhhccCccccCCCCccceEEEeccchHHHHHHHHHhcccC
Confidence 346789999999999999999999999 999999999999999999999988888889999999999999999997 455
Q ss_pred CCCCeEE
Q 033744 103 DKDRIKI 109 (112)
Q Consensus 103 ~~~~I~i 109 (112)
|.++..|
T Consensus 178 ~ed~~~I 184 (193)
T KOG3239|consen 178 PEDDVKI 184 (193)
T ss_pred Cccccee
Confidence 7775444
>KOG2522 consensus Filamentous baseplate protein Ligatin, contains PUA domain [Translation, ribosomal structure and biogenesis]
Back Show alignment and domain information
Probab=99.55 E-value=5.9e-15 Score=123.01 Aligned_cols=85 Identities=25% Similarity=0.306 Sum_probs=79.9
Q ss_pred CCCCceEEEEEEEecCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCC-CeEEEEcCchhHHHHHHHHhC-C
Q 033744 24 PGDKGYVHLRVQQRNGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVL-GKVIQLQGDHRKNVMIFLVKS-K 100 (112)
Q Consensus 24 ~~~~~~I~I~~~~R~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~-g~~I~lQGD~~~~i~~~L~~~-G 100 (112)
+|...+|.|.+++|.|||.||.|+||+. ++|+..++..|++.|+|+.||.+.|+. |-+++|||+|.+.|.++|.+. |
T Consensus 463 Kgs~ppi~i~te~RagnKkVT~V~nle~fgiDp~S~aa~Lqk~c~aSTtv~e~pg~kg~eVqvQGnqih~iadlL~k~yg 542 (560)
T KOG2522|consen 463 KGSLPPIKIITEMRAGNKKVTRVSNLEVFGIDPESLAADLQKICSASTTVSESPGFKGAEVQVQGNQIHSIADLLNKSYG 542 (560)
T ss_pred cCCCCceEEeehhhccCceEEEEccceeeccCHHHHHHHHHHHeeeeeecccCCCCCCceEEEecchhhHHHHHHHHhhC
Confidence 6788999999999999999999999999 999999999999999999999999974 689999999999999999996 8
Q ss_pred CCCCCCeEE
Q 033744 101 IVDKDRIKI 109 (112)
Q Consensus 101 ~~~~~~I~i 109 (112)
+ |+.+|+.
T Consensus 543 i-pkK~I~g 550 (560)
T KOG2522|consen 543 I-PKKWIDG 550 (560)
T ss_pred C-CHHHHhH
Confidence 8 9998864
>PF05046 Img2: Mitochondrial large subunit ribosomal protein (Img2); InterPro: IPR007740 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms
Back Show alignment and domain information
Probab=98.16 E-value=2.6e-05 Score=52.11 Aligned_cols=68 Identities=21% Similarity=0.339 Sum_probs=49.4
Q ss_pred eEEEEEEE-ecCCeeEEEEecCCCchhHHHHHHHHhhHhc------cCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 29 YVHLRVQQ-RNGKKCLTTVQGLKEDFGYQKILKDLKKEFC------CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 29 ~I~I~~~~-R~grK~VT~V~GL~~~~dlk~lak~lKk~~a------cggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
.+-|.... +.|.+.+|+|+-++. |+..|.++|++.|. ....|.+ ....|+|+||+.+.|++||.++||
T Consensus 13 ~LPVY~~~k~~g~~~~T~IrkI~G--D~~aL~~dL~~~l~~~~~~~~~~~V~~---~~g~i~IkG~~~~~Vk~wL~~~GF 87 (87)
T PF05046_consen 13 NLPVYLDIKNGGNRKITVIRKIEG--DIWALKKDLRKFLGEKPKKKIDVRVNE---LTGHIEIKGDHVEEVKKWLLEKGF 87 (87)
T ss_pred cccEEEEEeCCCcEeEEEEEeecC--CHHHHHHHHHHHhhhhcCCCcceEEee---cCCEEEEcCccHHHHHHHHHHCcC
Confidence 34455543 447899999999976 45666677776664 2334432 245799999999999999999997
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family of proteins has been identified as part of the mitochondrial large ribosomal subunit in Saccharomyces cerevisiae [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome
>KOG4034 consensus Uncharacterized conserved protein NOF (Neighbor of FAU) [Function unknown]
Back Show alignment and domain information
Probab=96.59 E-value=0.0065 Score=45.19 Aligned_cols=68 Identities=22% Similarity=0.301 Sum_probs=46.6
Q ss_pred EEEEEEE-ecCCeeEEEEecCCCc-----hhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 30 VHLRVQQ-RNGKKCLTTVQGLKED-----FGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 30 I~I~~~~-R~grK~VT~V~GL~~~-----~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
+-+.... ++|+|.+|+|+.++.+ -||...+...-++--| .-|.+ -.+.|.+-|||.+.|++||.++||
T Consensus 96 lPVYl~~k~~G~k~lT~IRkVeGDi~aLe~DL~s~L~~~~~~s~~-t~Vne---lsgqI~~~g~~v~~vr~~L~eKGF 169 (169)
T KOG4034|consen 96 LPVYLDYKQRGNKILTVIRKVEGDIWALENDLRSTLEMSPKKSYA-THVNE---LSGQIVLKGNHVDTVREWLQEKGF 169 (169)
T ss_pred cceEEeeecCCcEEEEEEEeecccHHHHHHHHHHHHhhccCCChh-hhhhh---hcceEEEeCChHHHHHHHHHHccC
Confidence 3444443 4499999999999873 3555555554443333 22322 135799999999999999999997
>PRK14451 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=93.51 E-value=0.4 Score=31.86 Aligned_cols=53 Identities=13% Similarity=0.094 Sum_probs=41.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+.++++..|.|+-.+++.-+|++||+- .++..++|.
T Consensus 8 ~V~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 62 (89)
T PRK14451 8 YISGRVQGVWFRASAKKLAEQLMISGWARNLADGRVEVFACGKEDKLEEFYTWLQ 62 (89)
T ss_pred EEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEECHHHHHHHHHHHh
Confidence 37787778888999999999999999998655555789999985 444444554
>PRK03988 translation initiation factor IF-2 subunit beta; Validated
Back Show alignment and domain information
Probab=93.12 E-value=0.19 Score=36.34 Aligned_cols=56 Identities=27% Similarity=0.379 Sum_probs=43.5
Q ss_pred ecCCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 37 RNGKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 37 R~grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
+-|+| |++.++.+ .=+.+-++|.|.+.+|+.|++ + ++...|+|.+..+..+-+...
T Consensus 37 ~eG~k--Tvi~Nf~~I~~~L~R~~~hv~ky~~~ELgt~g~i-~----~~~lii~G~~~~~~i~~~L~~ 97 (138)
T PRK03988 37 IEGNR--TIIRNFKEIADRLNRDPKHVAKFLLKELGTAGNI-E----GGRLILQGKFSPRVINEKIDR 97 (138)
T ss_pred EEcCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCceee-c----CCEEEEEEeeCHHHHHHHHHH
Confidence 44555 89999986 236899999999999999999 4 578999999776655555443
>TIGR00311 aIF-2beta translation initiation factor aIF-2, beta subunit, putative
Back Show alignment and domain information
Probab=92.03 E-value=0.33 Score=34.89 Aligned_cols=54 Identities=30% Similarity=0.418 Sum_probs=42.5
Q ss_pred CCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 39 GKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 39 grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
|+| |++.++.+ .=+.+-+.|.|.+.+|+.|++. +....|+|.+.....+-+...
T Consensus 34 G~k--Tvi~Nf~~Ia~~L~R~~~~v~ky~~~ELgt~g~i~-----~~rlii~G~~~~~~i~~~L~~ 92 (133)
T TIGR00311 34 GNR--TIIQNFREVAKALNRDEQHLLKYLLKELGTAGNLE-----GGRLILQGKFTHFLLNERIED 92 (133)
T ss_pred cCc--EEEecHHHHHHHHCCCHHHHHHHHHHHhCCCceec-----CCEEEEEeecCHHHHHHHHHH
Confidence 555 99999986 2368999999999999999994 457999999877665555443
>PRK14425 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.66 E-value=0.99 Score=30.25 Aligned_cols=53 Identities=13% Similarity=0.167 Sum_probs=41.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+.++++=.|.|+-.+++.-+|++||+ ..++..+.|.
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dGsVei~~qG~~~~le~f~~~l~ 65 (94)
T PRK14425 11 RITGRVQGVGFRDWTRDEAERLGLTGWVRNESDGSVTALIAGPDSAISAMIERFR 65 (94)
T ss_pred EEEEeEecccchHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 4567666778888889999999999999865555578999996 4466666666
>PRK14450 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.65 E-value=1.5 Score=29.04 Aligned_cols=55 Identities=15% Similarity=0.105 Sum_probs=43.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCC-eEEEEcCc--hhHHHHHHHHhCC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLG-KVIQLQGD--HRKNVMIFLVKSK 100 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g-~~I~lQGD--~~~~i~~~L~~~G 100 (112)
+|+|.-.++-+...+..+..+++=.|.|+-.+++. -+|++||+ ..+...++|. +|
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~~Vei~~~G~~~~v~~f~~~l~-~g 64 (91)
T PRK14450 7 IVKGKVQGVYFRDFTRTQATRLGLCGYAKNLANGNEVEVVAEGDKDSLLEFLDLLR-SG 64 (91)
T ss_pred EEEEEecCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEEeCHHHHHHHHHHHh-hC
Confidence 56777777788888999999999999998555553 57999999 6777777775 45
>PRK14439 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.55 E-value=1.3 Score=32.96 Aligned_cols=58 Identities=16% Similarity=0.145 Sum_probs=44.9
Q ss_pred EEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHhCC
Q 033744 43 LTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVKSK 100 (112)
Q Consensus 43 VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~~G 100 (112)
--.|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+. .+...+.|.+.|
T Consensus 78 ~i~VsGrVQGVGFR~fv~~~A~qlGLtGwVrNl~DGsVEI~aQG~ee~Ie~Fi~~L~~~g 137 (163)
T PRK14439 78 IAWVYGRVQGVGFRYTTQYEAKKLGLTGYAKNLDDGSVEVVACGEEGQVEKLMQWLKSGG 137 (163)
T ss_pred EEEEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCC
Confidence 3467888888888999999999999999998656666789999985 555555555444
>PRK14436 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.46 E-value=1.6 Score=29.01 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=40.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+- ++|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 61 (91)
T PRK14436 9 RIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGDE-ERVEALIGW 61 (91)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHH
Confidence 46777677788888999999999999998655555689999985 335555544
>PRK14434 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.27 E-value=1.6 Score=29.17 Aligned_cols=54 Identities=22% Similarity=0.243 Sum_probs=40.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhc-cCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFC-CNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~a-cggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+.-.+..+.++++ =.|.|.-.+++.-+|++||+..+.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lg~l~G~V~N~~dGsVei~~qG~~~~~l~~f~~~ 61 (92)
T PRK14434 7 IVSGRVQGVGFRYSVYSLALEIGDIYGRVWNNDDGTVEILAQSDDSAKLAKFIQE 61 (92)
T ss_pred EEEEeecceeEhHHHHHHHHHcCCcEEEEEECCCCCEEEEEEcCCHHHHHHHHHH
Confidence 56777777778888899999999 9999985555557899999755445555444
>PRK14446 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=90.22 E-value=0.98 Score=30.08 Aligned_cols=53 Identities=11% Similarity=0.075 Sum_probs=40.8
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+.-.+..+.++++=.|.|.-.+++.-+|++||+-. .|.+|+..
T Consensus 7 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~l~~f~~~ 59 (88)
T PRK14446 7 VVSGVVQGVWYRASTRERAVALGLVGHARNQADGSVEVVAAGSAA-ALEALEAW 59 (88)
T ss_pred EEEEecCCeeEhHHHHHHHeeCCeEEEEEECCCCCEEEEEEeCHH-HHHHHHHH
Confidence 567777777888889999999999999986666667899999853 44444443
>PRK14443 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.98 E-value=1.5 Score=29.59 Aligned_cols=54 Identities=17% Similarity=0.201 Sum_probs=41.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+..+++=.|.|+-.+++.-+|++||+ ..+...+.|.+
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~~ 64 (93)
T PRK14443 9 RVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSVEIHAIAEEENLNKFIDAIKK 64 (93)
T ss_pred EEEEeeCCccCcHHHHHHHHHcCCEEEEEECCCCEEEEEEECCHHHHHHHHHHHhc
Confidence 4567666777888889999999999999866666678999999 55555555544
>PRK14442 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.90 E-value=1.8 Score=28.77 Aligned_cols=53 Identities=13% Similarity=0.110 Sum_probs=40.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+.. .|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~-~i~~f~~~ 61 (91)
T PRK14442 9 YVGGRVQGVGFRQATREEADRLELDGWVRNLDDGRVEVVWEGEED-RAKALERW 61 (91)
T ss_pred EEEEecCCccccHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHH-HHHHHHHH
Confidence 567877778888889999999999999986666657899999854 34444443
>PRK14444 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.75 E-value=2.1 Score=28.48 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=41.2
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
-+|+|.-.++-+...+..+.++++=+|.|+-.+++.-+|++||+- ++|.+|+...
T Consensus 8 i~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l 62 (92)
T PRK14444 8 VFISGRVQGVNFRAYTRDRAREAGVKGWVRNLSDGRVEAVFEGSR-PAVQKMISWC 62 (92)
T ss_pred EEEEEeeCCcCcHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCH-HHHHHHHHHH
Confidence 356787778888888999999999999998555544689999994 3355555443
>PRK14435 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.63 E-value=1.8 Score=28.73 Aligned_cols=53 Identities=23% Similarity=0.391 Sum_probs=40.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+- ++|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~i~~f~~~ 59 (90)
T PRK14435 7 RVEGIVQGVGFRYFTRRVAKSLGVKGYVMNMDDGSVFIHAEGDE-NALRRFLNE 59 (90)
T ss_pred EEEEEeCCcCChHHHHHHHHHhCCEEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 56777777788888899999999999998766666789999985 334444443
>PRK14437 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.51 E-value=2 Score=29.72 Aligned_cols=53 Identities=17% Similarity=0.120 Sum_probs=41.7
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
.|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+.. +...++|.
T Consensus 28 ~V~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~ie~f~~~L~ 82 (109)
T PRK14437 28 TVSGKVQGVFFRESVRKKAEELQLTGWVKNLSHGDVELVACGERDSIMILTEWLW 82 (109)
T ss_pred EEEEecCCcCchHHHHHHHHHhCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 467777788888899999999999999986666657899999964 55555554
>PRK14428 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.47 E-value=2 Score=29.10 Aligned_cols=54 Identities=19% Similarity=0.238 Sum_probs=41.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+.-.+..+.++++=.|.|.-.+++.-+|++||+. +.|.+|+...
T Consensus 13 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dGsVei~~qG~~-~~i~~fi~~l 66 (97)
T PRK14428 13 VVTGLVQGVGFRYFTVTQARRLGVQGWVRNCRDGSVELEAQGSS-DAVQALVEQL 66 (97)
T ss_pred EEEEecCCccchHHHHHHHHHcCCEEEEEECCCCEEEEEEEcCH-HHHHHHHHHH
Confidence 56777777788888999999999999998655555789999985 4455555443
>PRK14448 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.28 E-value=2.7 Score=27.90 Aligned_cols=54 Identities=15% Similarity=0.077 Sum_probs=42.2
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
-.|+|.-.++-+....+.+..+++=.|.|+-.+++.-+|++||+- .+...++|.
T Consensus 6 ~~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~~v~~f~~~l~ 61 (90)
T PRK14448 6 FIVYGHVQGVGFRYFTWQEATKIGIKGYVKNRPDGSVEVVAVGSDAQIAAFRDWLQ 61 (90)
T ss_pred EEEEEeecCcchHHHHHHHHHHhCCEEEEEECCCCCEEEEEEeCHHHHHHHHHHHH
Confidence 367777778888899999999999999998766665789999985 444455553
>smart00653 eIF2B_5 domain present in translation initiation factor eIF2B and eIF5
Back Show alignment and domain information
Probab=89.24 E-value=1.1 Score=31.23 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=42.2
Q ss_pred CCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 39 GKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 39 grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
|+| -|++.++.+ .=+++-+.|.|.+.+|+.|++.+ .....|+|.+..+-.+-+..
T Consensus 15 G~~-kTvi~Nf~~I~~~L~R~p~hv~kyl~~ELgt~g~id~----~~rlii~G~~~~~~i~~~l~ 74 (110)
T smart00653 15 GKG-KTVIVNFADIAKALNRPPDHVLKFLLAELGTQGSIDG----KGRLIVNGRFTPKKLQDLLR 74 (110)
T ss_pred cCC-eEEEEcHHHHHHHHCCCHHHHHHHHHHHhCCceeECC----CCeEEEEEeeCHHHHHHHHH
Confidence 543 688899876 23689999999999999999952 26799999987665555444
>PRK14421 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=89.20 E-value=2.1 Score=29.13 Aligned_cols=53 Identities=15% Similarity=0.171 Sum_probs=40.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
+|+|.-.++-+...+..+.++++=.|.|+-.+++.-+|++||+-. +...++|.
T Consensus 9 ~v~G~VQGVGFR~fv~~~A~~lgL~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (99)
T PRK14421 9 TIRGRVQGVGYRAWVARTAEALGLEGWVRNRRDGSVEALFAGPADAVAEMIARCR 63 (99)
T ss_pred EEEEeEcCccchHHHHHHHHHhCCEEEEEECCCCEEEEEEeCCHHHHHHHHHHHH
Confidence 567777777888889999999999999985555547899999863 44444444
>PF00708 Acylphosphatase: Acylphosphatase; InterPro: IPR001792 Acylphosphatase (3
Back Show alignment and domain information
Probab=88.80 E-value=2.2 Score=27.83 Aligned_cols=54 Identities=20% Similarity=0.308 Sum_probs=39.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+- .+.+.++|..
T Consensus 9 ~v~G~VQGVgFR~~v~~~A~~~gl~G~V~N~~dg~V~i~~~G~~~~l~~f~~~l~~ 64 (91)
T PF00708_consen 9 IVSGRVQGVGFRPFVKRIARKLGLTGWVRNLPDGSVEIEAEGEEEQLEEFIKWLKK 64 (91)
T ss_dssp EEEEETSSSSHHHHHHHHHHHTT-EEEEEE-TTSEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEECcCChhHHHHHHHHHhCCceEEEECCCCEEEEEEEeCHHHHHHHHHHHHh
Confidence 67887778888999999999999999998655554689999974 3444444444
6.1.7 from EC) is an enzyme of approximately 98 amino acid residues that specifically catalyses the hydrolysis of the carboxyl-phosphate bond of acylphosphates [], its substrates including 1,3-diphosphoglycerate and carbamyl phosphate []. The enzyme has a mainly beta-sheet structure with 2 short alpha-helical segments. It is distributed in a tissue-specific manner in a wide variety of species, although its physiological role is as yet unknown []: it may, however, play a part in the regulation of the glycolytic pathway and pyrimidine biosynthesis []. There are two known isozymes. One seems to be specific to muscular tissues, the other, called 'organ-common type', is found in many different tissues. While bacterial and archebacterial hypothetical proteins that are highly similar to that enzyme and that probably possess the same activity. These proteins include: Escherichia coli putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yccX). Bacillus subtilis putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (gene yflL). Archaeoglobus fulgidus putative acylphosphatase (3.6.1.7 from EC) (acylphosphate phosphohydrolase) (O29440 from SWISSPROT). An acylphosphatase-like domain is also found in some prokaryotic hydrogenase maturation HypF carbamoyltransferases [, ].; PDB: 1APS_A 1GXT_A 1GXU_A 2HLT_A 2FHM_A 2HLU_A 3BR8_A 1ULR_A 3TRG_A 2BJD_A ....
>PRK14438 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.70 E-value=2.1 Score=28.40 Aligned_cols=54 Identities=17% Similarity=0.185 Sum_probs=41.1
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
-.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|.+||+- ++|.+|+..
T Consensus 7 i~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~ 60 (91)
T PRK14438 7 VTVKGLVQGVAFRHHTQQTAQRLNVSGWVKNLPNGSVQGCFEGEE-TDVAALIDW 60 (91)
T ss_pred EEEEEecCCcCccHHHHHHHHHcCCEEEEEECCCCEEEEEEEECH-HHHHHHHHH
Confidence 356777778888889999999999999998555554689999985 335555544
>PRK12336 translation initiation factor IF-2 subunit beta; Provisional
Back Show alignment and domain information
Probab=88.46 E-value=1.1 Score=33.92 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=40.7
Q ss_pred EEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 44 TTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 44 T~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
|++.+|.+ .=+.+-+.|.|.+.||+.|++. +....|+|.+..+-.+-+...
T Consensus 38 T~i~N~~~i~~~l~R~~~~~~ky~~~ELgt~~~~~-----~~~~ii~G~~~~~~i~~~l~~ 93 (201)
T PRK12336 38 TILTNFGEIADALNRDPDHLMKFLQRELGTAGKIE-----GGRAVFNGKFTEEDIQAAIDA 93 (201)
T ss_pred EEEecHHHHHHHHCCCHHHHHHHHHHHhCCcceec-----CCEEEEEeeeCHHHHHHHHHH
Confidence 89999986 2368999999999999999994 357899999876665555543
>PRK14426 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=88.20 E-value=2.8 Score=27.85 Aligned_cols=53 Identities=15% Similarity=0.113 Sum_probs=40.8
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+. .+.+.++|.
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~ 63 (92)
T PRK14426 9 WVYGRVQGVGFRYHTQHEALKLGLTGYAKNLDDGSVEVVACGEEEQVEKLMEWLK 63 (92)
T ss_pred EEEEeeCCcCchHHHHHHHHHhCCEEEEEECCCCcEEEEEEeCHHHHHHHHHHHh
Confidence 56777677788888999999999999998666666789999995 444444444
>PRK14449 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.57 E-value=2.5 Score=27.94 Aligned_cols=55 Identities=13% Similarity=0.079 Sum_probs=41.8
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
-+|+|.-.++-+...+..+..+++=.|.|.-.+++.-+|++||+. +.|.+|+...
T Consensus 7 i~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~l 61 (90)
T PRK14449 7 LRITGHVQGVGLRYSVYQKAVSLGITGYAENLYDGSVEVVAEGDE-ENIKELINFI 61 (90)
T ss_pred EEEEEeecCcChHHHHHHHHHHcCCEEEEEECCCCeEEEEEEeCH-HHHHHHHHHH
Confidence 356777678888888999999999999998655555789999986 3355555543
>PRK14433 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.50 E-value=2.3 Score=28.11 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=41.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...++.+..+++=+|.|+-.+++.-+|++|||-. .|.+|+...
T Consensus 6 ~v~G~VQGVGFR~~v~~~A~~~~l~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~l 59 (87)
T PRK14433 6 LVSGRVQGVGYRAFVQKKARELGLSGYAENLSDGRVEVVAEGPKE-ALERLLHWL 59 (87)
T ss_pred EEEEeeeCcCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEECHH-HHHHHHHHH
Confidence 567766677888889999999999999986666557899999963 565555543
>PRK14430 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.38 E-value=3.3 Score=27.64 Aligned_cols=52 Identities=15% Similarity=0.191 Sum_probs=39.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFL 96 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L 96 (112)
.|.|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+- .+.+.++|
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~lgl~G~VrN~~dGsVei~~qG~~~~i~~f~~~l 62 (92)
T PRK14430 9 VAHGRVQGVGYRAACADAADDLGLGGWVRNRADGTVEVMASGTVRQLEALRAWM 62 (92)
T ss_pred EEEEeecceeeHHHHHHHHHHhCCEEEEEECCCCcEEEEEEcCHHHHHHHHHHH
Confidence 56676666777888889999999999998655555789999984 35555555
>PRK14423 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.32 E-value=2.9 Score=27.79 Aligned_cols=53 Identities=19% Similarity=0.132 Sum_probs=39.6
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+.. .|.+|+..
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~G~~~-~i~~f~~~ 62 (92)
T PRK14423 10 FVSGRVQGVYYRASTRDTARELGVDGWVRNLDDGRVEAVFEGPRD-AVEAMVEW 62 (92)
T ss_pred EEEEecCCeeehHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHH
Confidence 457777777888889999999999999985544445899999854 45554444
>PRK14445 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=87.18 E-value=2.6 Score=27.93 Aligned_cols=53 Identities=21% Similarity=0.206 Sum_probs=39.8
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
+|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+- .+...++|.
T Consensus 9 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~l~~f~~~l~ 63 (91)
T PRK14445 9 IVSGLVQGVGFRMFIDRAASELNLSGWVRNLPDGTVEIEAQGSSGMIDELIKQAE 63 (91)
T ss_pred EEEEEEcCcCChHHHHHHHhhCCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHH
Confidence 56777677788888999999999999998555554689999986 444444444
>PRK14424 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.96 E-value=4.5 Score=27.18 Aligned_cols=55 Identities=16% Similarity=0.201 Sum_probs=42.0
Q ss_pred EEEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 43 LTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 43 VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
--+|+|.-.++-+...+..+..+++=.|.|+-.+++.-+|.+||+-. +...++|.
T Consensus 10 ~~~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~v~~f~~~l~ 66 (94)
T PRK14424 10 YVRVRGVVQGVGFRHATVREAHALGLRGWVANLEDGTVEAMIQGPAAQIDRMLAWLR 66 (94)
T ss_pred EEEEEEeecCCchHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECHHHHHHHHHHHH
Confidence 34677777777888889999999999999986665557899999863 45555554
>PRK14420 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.89 E-value=2.6 Score=27.80 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=41.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...+..+..+++=.|.|.-.+++.-+|++||+- +.|.+|+...
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~Vei~~qG~~-~~i~~f~~~l 60 (91)
T PRK14420 7 IVDGRVQGVGFRYFVQMEADKRKLTGWVKNRDDGTVEIEAEGPE-EALQLFLDAI 60 (91)
T ss_pred EEEEeeCCcCChHHHHHHHHHcCCEEEEEECCCCcEEEEEEECH-HHHHHHHHHH
Confidence 56676667777888888889999999998665555789999974 5566666554
>PRK14441 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.79 E-value=3.3 Score=27.63 Aligned_cols=53 Identities=13% Similarity=0.125 Sum_probs=39.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~ 97 (112)
.|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+- .+...++|.
T Consensus 10 ~v~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 64 (93)
T PRK14441 10 VVSGRVQGVAFRQSAADEARRLGVEGWVRNLPDGRVEAEAEGERAAVGALVRWCH 64 (93)
T ss_pred EEEEecCCccchHHHHHHHhhcCcEEEEEECCCCEEEEEEEECHHHHHHHHHHHh
Confidence 45777777788888999999999999997555554689999983 344444443
>PRK14447 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=86.47 E-value=3.2 Score=27.78 Aligned_cols=53 Identities=17% Similarity=0.169 Sum_probs=40.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCC-CeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVL-GKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~-g~~I~lQGD~~~~i~~~L~~ 98 (112)
.|+|.-.++-+.-.++.+.++++=.|.|.-.+++ .-+|++||+ .+.|.+|+..
T Consensus 9 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~dG~~Vei~~qG~-~~~l~~f~~~ 62 (95)
T PRK14447 9 FIRGKVQGVFFRQSMKEVANRNGVRGWVRNRSDGRTVEAVLEGP-RDAVLKVIEW 62 (95)
T ss_pred EEEEecCCccchHHHHHHHhhcCeEEEEEECCCCCEEEEEEEeC-HHHHHHHHHH
Confidence 5677777888888999999999999999855554 257999998 4455555443
>PRK14440 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.95 E-value=3.3 Score=27.46 Aligned_cols=53 Identities=17% Similarity=0.187 Sum_probs=39.5
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|.+||+- +.|.+|+..
T Consensus 8 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 60 (90)
T PRK14440 8 RVYGLVQGVGFRKFVQIHAIRLGIKGYAKNLPDGSVEVVAEGYE-EALSKLLER 60 (90)
T ss_pred EEEEeEeccCchHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCH-HHHHHHHHH
Confidence 56676667778888888999999999998555555689999976 445555444
>PRK14422 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=85.60 E-value=4.2 Score=27.12 Aligned_cols=54 Identities=15% Similarity=0.142 Sum_probs=41.2
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+.. +.+.++|.+
T Consensus 11 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~~G~~~~i~~f~~~l~~ 66 (93)
T PRK14422 11 WVHGHVQGVGFRWWTRSRALELGLTGYAANLADGRVQVVAEGPRAACEKLLQLLRG 66 (93)
T ss_pred EEEEeeCCcCcHHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHHh
Confidence 567777777888889999999999999986655557899999864 444444443
>PRK14452 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=84.95 E-value=6.7 Score=27.06 Aligned_cols=52 Identities=13% Similarity=0.064 Sum_probs=40.6
Q ss_pred EEEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHH
Q 033744 44 TTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFL 96 (112)
Q Consensus 44 T~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L 96 (112)
-.|+|.-.++-+...+..+.++++=.|.|.-.+++.-+|++||+.. .|.+|+
T Consensus 24 i~V~G~VQGVGFR~~v~~~A~~lgL~G~V~N~~dGsVeI~~qG~~~-~ve~F~ 75 (107)
T PRK14452 24 FLIEGRVQGVGFRASCCRRALDLGLSGWVRNLSDGSVEVQAEGPPL-ALSELR 75 (107)
T ss_pred EEEEEeecCcChhHHHHHHHHHhCCEEEEEECCCCCEEEEEEcCHH-HHHHHH
Confidence 3567777788888889999999999999986555557899999953 455553
>PRK14432 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=84.02 E-value=4.9 Score=26.82 Aligned_cols=53 Identities=13% Similarity=0.088 Sum_probs=40.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEc-CchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQ-GDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQ-GD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++| ||. +.|.+|+..
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~~~G~~-~~v~~f~~~ 60 (93)
T PRK14432 7 FISGKVQGVGFRFFTEQIANNMKLKGFVKNLNDGRVEIVAFFNTK-EQMKKFEKL 60 (93)
T ss_pred EEEEeecCeeehHHHHHHHHHhCCEEEEEECCCCCEEEEEEECCH-HHHHHHHHH
Confidence 56777777788888899999999999998665555689998 985 445555544
>PRK14429 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=83.52 E-value=4.5 Score=26.72 Aligned_cols=53 Identities=17% Similarity=0.202 Sum_probs=40.4
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchh--HHHHHHHH
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHR--KNVMIFLV 97 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~--~~i~~~L~ 97 (112)
.|+|.-.++-+...++.+..+++=.|.|.-.+++.-+|++||+-. +...++|.
T Consensus 7 ~v~G~VQGVGFR~~v~~~A~~~gl~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~ 61 (90)
T PRK14429 7 KLTGKVQGVGCRRATLTKARALGVTGYVTNCEDGSVEILAQGSDPAVDNLIAWCE 61 (90)
T ss_pred EEEEeecCeeeHHHHHHHHHHhCCEEEEEECCCCeEEEEEEeCHHHHHHHHHHHh
Confidence 456776677788889999999999999985555556899999864 55555554
>PRK14427 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=83.36 E-value=4 Score=27.27 Aligned_cols=54 Identities=19% Similarity=0.138 Sum_probs=40.0
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.+++.-+|++||+.. .|.+|+...
T Consensus 11 ~v~G~VQGVGFR~fv~~~A~~lgl~G~V~N~~dGsVei~~qG~~~-~i~~f~~~l 64 (94)
T PRK14427 11 RVFGVVQGVGFRYWTMRKAEELGLTGTVRNLDDGSVALVAEGTGE-QVEKLLDWL 64 (94)
T ss_pred EEEEEeCCcCChHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHH-HHHHHHHHH
Confidence 456666677788888999999999999986555556899999863 355555443
>PRK14431 acylphosphatase; Provisional
Back Show alignment and domain information
Probab=82.49 E-value=4.8 Score=26.66 Aligned_cols=53 Identities=19% Similarity=0.226 Sum_probs=41.3
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCch--hHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDH--RKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~--~~~i~~~L~~ 98 (112)
.|+|.-.++-+...++.+.++++=.|.|.-.++ +-+|++||+. .++..++|.+
T Consensus 7 ~v~G~VQGVGFR~~~~~~A~~~gl~G~V~N~~d-gVei~~qG~~~~l~~f~~~l~~ 61 (89)
T PRK14431 7 QVFGRVQGVGFRYFTQRIAMNYNIVGTVQNVDD-YVEIYAQGDDADLERFIQGVIE 61 (89)
T ss_pred EEEEecCCeeEhHHHHHHHhhcCCEEEEEECCC-cEEEEEEcCHHHHHHHHHHHhc
Confidence 567777777788889999999999999986655 5789999985 5555555554
Homologous Structure Domains
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 112
d2if1a_ 126
Eukaryotic translation initiation factor eIF-1 (SU
100.0 d1d1ra_ 83
YciH {Escherichia coli [TaxId: 562]}
99.88 d1neea1 98
Translation initiation factor 2 beta, aIF2beta, N-
95.39 d1urra_ 97
Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila
95.25 d1w2ia_ 90
Acylphosphatase {Pyrococcus horikoshii [TaxId: 539
93.31 d1ulra_ 87
Acylphosphatase {Thermus thermophilus [TaxId: 274]
91.96 d2acya_ 98
Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
91.56 d1apsa_ 98
Acylphosphatase {Horse (Equus caballus) [TaxId: 97
90.11 d1gxua_ 88
Hydrogenase maturation protein HypF N-terminal dom
88.73 d1k8ba_ 52
Translation initiation factor 2 beta, aIF2beta, N-
84.94
>d2if1a_ d.64.1.1 (A:) Eukaryotic translation initiation factor eIF-1 (SUI1) {Human (Homo sapiens) [TaxId: 9606]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: Eukaryotic translation initiation factor eIF-1 (SUI1)
species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-39 Score=228.69 Aligned_cols=110 Identities=48% Similarity=0.875 Sum_probs=102.8
Q ss_pred CCcccccCCCCCCCCcCCcCCC---CCCCCceEEEEEEEecCCeeEEEEecCCCchhHHHHHHHHhhHhccCcEEEecCC
Q 033744 1 MVDIDSQIPTSYDPFADIKDSL---APGDKGYVHLRVQQRNGKKCLTTVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKV 77 (112)
Q Consensus 1 ~~~~~~~~~~~~dpf~~~~~~~---~~~~~~~I~I~~~~R~grK~VT~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~ 77 (112)
||+++|+. |||||++..+.+ .++..++|+|++++|+|||.||+|+||+..+|+++|+|+||++|||||||++.++
T Consensus 14 ~s~i~nl~--s~dpf~d~~~~~~~~~~~~~~~I~I~~ekR~G~K~VT~I~Gl~~~~dlk~laK~lKk~~acggSVk~~~~ 91 (126)
T d2if1a_ 14 MSAIQNLH--SFDPFADASKGDDLLPAGTEDYIHIRIQQRNGRKTLTTVQGIADDYDKKKLVKAFKKKFACNGTVIEHPE 91 (126)
T ss_dssp GGGCSCCC--CCCTTSSCCCCSSCCSCSCTTCEECCCCCSSSSCCBCEEBSCCTTSCHHHHHTTHHHHTCCCEEEECCTT
T ss_pred cccccccc--cCCCccccccccccCCCCCcceEEEEEEecCCCCCeEEEECCCCcccHHHHHHHHHHhcCCCceEEeCCC
Confidence 88999984 899999977666 5667889999999999999999999998789999999999999999999998888
Q ss_pred CCeEEEEcCchhHHHHHHHHhCCCCCCCCeEEccC
Q 033744 78 LGKVIQLQGDHRKNVMIFLVKSKIVDKDRIKIHGF 112 (112)
Q Consensus 78 ~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I~ihg~ 112 (112)
++.+|+||||||++|.+||.++|++++++|+||||
T Consensus 92 ~~~~I~IQGD~r~~v~~~L~~~g~~~k~~I~vHg~ 126 (126)
T d2if1a_ 92 YGEVIQLQGDQRKNICQFLVEIGLAKDDQLKVHGF 126 (126)
T ss_dssp TSSEEEESBCCHHHHHHHHHHHTSSCTTTEECCCC
T ss_pred CCcEEEEcccHHHHHHHHHHHcCCCccccEEecCC
Confidence 88899999999999999999999999999999998
>d1d1ra_ d.64.1.1 (A:) YciH {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: eIF1-like
superfamily: eIF1-like
family: eIF1-like
domain: YciH
species: Escherichia coli [TaxId: 562]
Probab=99.88 E-value=1.8e-23 Score=136.79 Aligned_cols=70 Identities=29% Similarity=0.450 Sum_probs=62.6
Q ss_pred CceEEEEEEEe-cCCeeEEEEecCCC-chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCC
Q 033744 27 KGYVHLRVQQR-NGKKCLTTVQGLKE-DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKI 101 (112)
Q Consensus 27 ~~~I~I~~~~R-~grK~VT~V~GL~~-~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~ 101 (112)
...|+|+.+++ +++|.||+|+||+. .+|+++|++.||++||||||+++ .+|+|||||+++|.+||.++||
T Consensus 3 ~~~Vri~~e~kgR~GK~VT~I~Gl~~~~~dlk~l~k~lKk~~gcGgsvk~-----~~I~lQGd~~~~v~~~L~~~G~ 74 (83)
T d1d1ra_ 3 DGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKD-----GVIEIQGDKRDLLKSLLEAKGM 74 (83)
T ss_dssp CCEEEEEECCCSSSSCCCEEEECCCSCHHHHHHHHHHHTTSSSSCCBCCS-----SCEEECSCCHHHHHHHHHHHTC
T ss_pred CeEEEEEEEcCCCCCCeEEEEECCcCCHHHHHHHHHHHHHHhcCCEEEEC-----CEEEEeCcHHHHHHHHHHHcCC
Confidence 34688887654 34599999999998 99999999999999999999973 6899999999999999999999
>d1neea1 d.241.1.1 (A:1-98) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=95.39 E-value=0.0081 Score=38.38 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=39.7
Q ss_pred CCeeEEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHH
Q 033744 39 GKKCLTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFL 96 (112)
Q Consensus 39 grK~VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L 96 (112)
|+| |++.++.+ .=+++-+.|.|.+.+||.|++. +..+.|+|.+.....+-+
T Consensus 36 Gkk--Tii~Nf~~Ia~~L~R~p~hl~kfl~~ELgt~g~i~-----~~~lii~G~~~~~~i~~~ 91 (98)
T d1neea1 36 GNR--TFIQNFREVADALNRDPQHLLKFLLRELGTAGNLE-----GGRAILQGKFTHFLINER 91 (98)
T ss_dssp TTE--EEESCHHHHHHHHCSSHHHHHHHHHHHCCSCCCCB-----TTTEEEESSCSSSHHHHH
T ss_pred cce--EEEechHHHHHHHCCCHHHHHHHHHHHhCCceEEe-----CCEEEEEeeeCHHHHHHH
Confidence 665 78899876 2379999999999999999994 346899999765544443
>d1urra_ d.58.10.1 (A:) Acylphosphatase 2 (Cg18505) {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase 2 (Cg18505)
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=95.25 E-value=0.064 Score=33.28 Aligned_cols=56 Identities=16% Similarity=0.127 Sum_probs=44.9
Q ss_pred EecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHhCCC
Q 033744 46 VQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVKSKI 101 (112)
Q Consensus 46 V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~~G~ 101 (112)
|.|.-.++-+...++.+.++++..|.|+-.+++.-+|++||+ ..++..++|...|-
T Consensus 12 V~G~VQGVGFR~~~~~~A~~l~l~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~~p 69 (97)
T d1urra_ 12 IFGRVQGVFFRKHTSHEAKRLGVRGWCMNTRDGTVKGQLEAPMMNLMEMKHWLENNRI 69 (97)
T ss_dssp EEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEECHHHHHHHHHHHHHCCS
T ss_pred EEEEecCcCChHHHHHHHHHcCCEEEEEECCCCCEEEEEEcCHHHHHHHHHHHhhCCC
Confidence 778777888899999999999999999866666678999998 45556666666553
>d1w2ia_ d.58.10.1 (A:) Acylphosphatase {Pyrococcus horikoshii [TaxId: 53953]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Pyrococcus horikoshii [TaxId: 53953]
Probab=93.31 E-value=0.18 Score=31.01 Aligned_cols=54 Identities=19% Similarity=0.199 Sum_probs=43.2
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhC
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKS 99 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~ 99 (112)
.|+|.-.++-+...++.+..+++-.|.|.-.+++.-+|.+||+ .+.|.+|+...
T Consensus 8 ~V~G~VQGVGFR~~v~~~A~~lgl~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~l 61 (90)
T d1w2ia_ 8 KIYGRVQGVGFRWSMQREARKLGVNGWVRNLPDGSVEAVLEGD-EERVEALIGWA 61 (90)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCEEEEEECTTSCEEEEEEEE-HHHHHHHHHHT
T ss_pred EEEEeEeCcCChHHHHHHHHHcCCeEEEEECCCCCEEEEEECC-HHHHHHHHHHH
Confidence 4667666788899999999999999999865555568999998 57777777654
>d1ulra_ d.58.10.1 (A:) Acylphosphatase {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Thermus thermophilus [TaxId: 274]
Probab=91.96 E-value=0.37 Score=29.32 Aligned_cols=53 Identities=19% Similarity=0.230 Sum_probs=41.9
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
+|+|.-.++-+...++.+..+++=.|.|+-.+++.-+|.+||+. +.|.+|+..
T Consensus 6 iV~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~~G~~-~~v~~f~~~ 58 (87)
T d1ulra_ 6 LVKGRVQGVGYRAFAQKKALELGLSGYAENLPDGRVEVVAEGPK-EALELFLHH 58 (87)
T ss_dssp EEEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEESCH-HHHHHHHHH
T ss_pred EEEEEEeCccCHHHHHHHHHHcCCeEEEEECCCCCEEEEEEECH-HHHHHHHHH
Confidence 67887778888899999999999999998767777789999983 445544443
>d2acya_ d.58.10.1 (A:) Acylphosphatase {Cow (Bos taurus) [TaxId: 9913]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Cow (Bos taurus) [TaxId: 9913]
Probab=91.56 E-value=0.41 Score=29.54 Aligned_cols=61 Identities=21% Similarity=0.147 Sum_probs=45.2
Q ss_pred EecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCc--hhHHHHHHHHhCCCCCCCCe
Q 033744 46 VQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGD--HRKNVMIFLVKSKIVDKDRI 107 (112)
Q Consensus 46 V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD--~~~~i~~~L~~~G~~~~~~I 107 (112)
|+|--.++-+...++....+++=.|.|.-.+++.-+|++||+ ..+++.++|...|- |...|
T Consensus 13 V~G~VQGVGFR~~v~~~A~~l~L~G~V~N~~dG~Vei~~qG~~~~i~~f~~~l~~~gp-~~a~V 75 (98)
T d2acya_ 13 IFGKVQGVFFRKYTQAEGKKLGLVGWVQNTDQGTVQGQLQGPASKVRHMQEWLETKGS-PKSHI 75 (98)
T ss_dssp EEEECSSSSHHHHHHHHHHHTTCEEEEEECTTSCEEEEEEEEHHHHHHHHHHHHHTCS-TTCEE
T ss_pred EEEEEcCcCchHHHHHHHHHcCCEEEEEECCCCeEEEEEEECHHHHHHHHHHHHhcCC-CCcEE
Confidence 667667778899999999999999999866666678999998 23344444555676 55444
>d1apsa_ d.58.10.1 (A:) Acylphosphatase {Horse (Equus caballus) [TaxId: 9796]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Acylphosphatase
species: Horse (Equus caballus) [TaxId: 9796]
Probab=90.11 E-value=0.072 Score=33.09 Aligned_cols=52 Identities=19% Similarity=0.100 Sum_probs=41.1
Q ss_pred EecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHh
Q 033744 46 VQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVK 98 (112)
Q Consensus 46 V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~ 98 (112)
|.|.-.++-+...++.+..+++..|.|+-.+++.-+|++||+ .+.|.+|+..
T Consensus 13 V~G~VQGVGFR~~~~~~A~~~~l~G~V~N~~dG~Vei~~qG~-~~~i~~f~~~ 64 (98)
T d1apsa_ 13 VFGRVQGVCFRMYAEDEARKIGVVGWVKNTSKGTVTGQVQGP-EEKVNSMKSW 64 (98)
T ss_dssp EECTTSCCCCTTHHHHHHHHHTCEEEEECCTTCEEEEEEEEE-HHHHHHHHHS
T ss_pred EEEeEcCcCcHHHHHHHHHHcCCeEEEEECCCCCEEEEEEcC-HHHHHHHHHH
Confidence 777777778888889999999999999855555568999997 4666777664
>d1gxua_ d.58.10.1 (A:) Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP) {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: Acylphosphatase/BLUF domain-like
family: Acylphosphatase-like
domain: Hydrogenase maturation protein HypF N-terminal domain (HypF-ACP)
species: Escherichia coli [TaxId: 562]
Probab=88.73 E-value=1.3 Score=26.62 Aligned_cols=60 Identities=20% Similarity=0.317 Sum_probs=43.9
Q ss_pred EEecCCCchhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcCchhHHHHHHHHhCCCCCCCCe
Q 033744 45 TVQGLKEDFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQGDHRKNVMIFLVKSKIVDKDRI 107 (112)
Q Consensus 45 ~V~GL~~~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQGD~~~~i~~~L~~~G~~~~~~I 107 (112)
.|+|.-.++-+...++.+..+++=.|.|+-.+++ .++.+||+-.. ..+.|.++|- |...|
T Consensus 9 ~V~G~VQGVGFR~~v~~~A~~l~l~G~V~N~~dG-v~~~~~~~~~~-fi~~l~~~gp-~~a~V 68 (88)
T d1gxua_ 9 RIRGKVQGVGFRPFVWQLAQQLNLHGDVCNDGDG-VEVRLREDPEV-FLVQLYQHCP-PLARI 68 (88)
T ss_dssp EEEEECSSSSHHHHHHHHHHHHTCCEEEEECSSS-EEEEESSCCHH-HHHHHHHTCC-TTCEE
T ss_pred EEEEEEeCccCHHHHHHHHHHcCCeEEEEECCCC-cEEEEEcCHHH-HHHHHHHcCC-CCcEE
Confidence 4667666777888899999999999999855544 78999998654 4556667775 44333
>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta, aIF2beta, N-terminal domain {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Ribosome binding domain-like
superfamily: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
family: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
domain: Translation initiation factor 2 beta, aIF2beta, N-terminal domain
species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=84.94 E-value=0.35 Score=27.08 Aligned_cols=39 Identities=28% Similarity=0.281 Sum_probs=32.1
Q ss_pred EEEEecCCC-----chhHHHHHHHHhhHhccCcEEEecCCCCeEEEEcC
Q 033744 43 LTTVQGLKE-----DFGYQKILKDLKKEFCCNGNVVNDKVLGKVIQLQG 86 (112)
Q Consensus 43 VT~V~GL~~-----~~dlk~lak~lKk~~acggsv~~~p~~g~~I~lQG 86 (112)
-|++.++.+ .=|++-++|.|.+.+|..|++. +....|+|
T Consensus 8 kTvi~Nf~eI~~~L~R~p~hv~kfl~~ELgt~g~~~-----~~rlii~G 51 (52)
T d1k8ba_ 8 RTIIRNFRELAKAVNRDEEFFAKYLLKETGSAGNLE-----GGRLILQR 51 (52)
T ss_dssp EEEECCHHHHHHHHHTCHHHHHHHHHHHHSSEEEEE-----TTEEEEEC
T ss_pred eEeeecHHHHHHHhCCCHHHHHHHHHHHhCCceeee-----CCEEEEeC
Confidence 478889876 2369999999999999999994 45688887
