Citrus Sinensis ID: 033772

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110--
Protein Sequence
MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPKSVTVSLPPTSPLPLTIESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGKMWGLARTIQYSL
Secondary Structure (PSIPRED)
ccccccHHHHHHHcccccccccccccccccccccccccEEEcccccccccEEEEEEEcccccccccccccccccccEEEEccEEEEcccEEEEEcccccccEEccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccEEEEEHccccccccccccccccccccEEEcccEEEccccEEEEEcccccccccccccccccc
Coil and Loop (DISEMBL)
MATASMSASLIGSFkglslsssssssflkgdftvcpksvtvslpptsplpltiesahkkgagstkngrdsrgqrlgvkifgdqvakpgaiIVRQrgtkgkmwgLARTIQYSL
Flexible Loop (DISEMBL)
MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPKSVTVSLPPTSPLPLTIesahkkgagstkngrdsrgqRLGVkifgdqvakpgaiivrqrgtkgkmwglartiqysl
Low Complexity Region (SEG)
MATASMSAsligsfkglslsssssssflkGDFTVCPKsvtvslpptsplpltIESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGKMWGLARTIQYSL
Disordered region (IsUnstruct)
******************************DFTVCP**************************************LGVKIFGDQVAKPGAIIVRQRGTKGKMWGLARTI****
Disordered Region (DISOPRED)
********SLIGSFKG*******************************PLPLT**********************LGVKIFGDQVAKPGAIIVRQRGTKGKMWGLAR******
Disordered Region (DISEMBL)
*********LIGSFK************LKGDFTVCPKSVTVSLPPTSPLPLTIESAH************SRGQRLGVKIFGDQVAKPGAIIVRQRGTKGKMWGLARTIQYSL
Disordered Region (DISPRO)
**************K**************************SLPPTSPLPLTIESAHK**************QRLGVKIFGDQVAKPGAIIVRQRGTKGKMWGLARTIQY*L
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPKSVTVSLPPTSPLPLTIESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGKMWGLARTIQYSL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	112	2.2.26 [Sep-21-2011]
Q9FLN4	198	50S ribosomal protein L27	yes	no	0.919	0.520	0.699	7e-28
P30155	179	50S ribosomal protein L27	N/A	no	0.866	0.541	0.697	3e-24
O65037	195	50S ribosomal protein L27	yes	no	0.848	0.487	0.617	4e-21
P82190	58	50S ribosomal protein L27	N/A	no	0.455	0.879	0.796	8e-17
A8Z619	84	50S ribosomal protein L27	yes	no	0.383	0.511	0.744	2e-12
Q1LSJ8	84	50S ribosomal protein L27	yes	no	0.383	0.511	0.744	5e-12
B7JZA3	87	50S ribosomal protein L27	yes	no	0.383	0.494	0.767	6e-12
B1WWL8	87	50S ribosomal protein L27	yes	no	0.383	0.494	0.744	1e-11
Q4G3B1	87	50S ribosomal protein L27	N/A	no	0.366	0.471	0.731	1e-11
B0JQG5	89	50S ribosomal protein L27	yes	no	0.383	0.483	0.744	2e-11

>sp|Q9FLN4|RK27_ARATH 50S ribosomal protein L27, chloroplastic OS=Arabidopsis thaliana GN=RPL27 PE=2 SV=1

 Score =  122 bits (306), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 90/113 (79%), Gaps = 10/113 (8%)

Query: 1   MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPK-SVTVSLPPTS---PLPLTIESA 56
           MAT SMS +LIG+FKGLSLSS+SS    +GD +  PK S TV+LP  +   P+PLTIESA
Sbjct: 3   MAT-SMSLNLIGAFKGLSLSSTSSFL--RGDLSFSPKTSFTVTLPLENLQAPIPLTIESA 59

Query: 57  HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK   GK  G+ +
Sbjct: 60  HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112

Arabidopsis thaliana (taxid: 3702)

>sp|P30155|RK27_TOBAC 50S ribosomal protein L27, chloroplastic OS=Nicotiana tabacum GN=RPL27 PE=1 SV=1

 Score =  110 bits (274), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 84/109 (77%), Gaps = 12/109 (11%)

Query: 5   SMSASLIGSFKGLSLSSSSSSSFLKGDF----TVCPKSVTVSLPPTSPLPLTIESAHKKG 60
           ++S SL+G+FKGLSL+SSSS    KGDF     V PK  +VS P  SPL  TIESAHKKG
Sbjct: 2   AVSFSLVGAFKGLSLASSSSFL--KGDFGAAFPVAPK-FSVSFPLKSPL--TIESAHKKG 56

Query: 61  AGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AGSTKNGRDS GQRLGVKIFGDQVAKPG+IIVRQRGTK   GK  GL +
Sbjct: 57  AGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGK 105

Nicotiana tabacum (taxid: 4097)

>sp|O65037|RK27_ORYSJ 50S ribosomal protein L27, chloroplastic OS=Oryza sativa subsp. japonica GN=RPL27 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 76/102 (74%), Gaps = 7/102 (6%)

Query: 4   ASMSASLIGSFKGLSLSSSSSSS----FLKGDFTVC--PKSVTVSLPPTSPLP-LTIESA 56
           ASM+ +L+G+FKG+SLSS   SS    FL+ D         V + +P T P+  LTI+ A
Sbjct: 2   ASMAFTLVGAFKGMSLSSPCHSSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMA 61

Query: 57  HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
           HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAII+RQRGT+
Sbjct: 62  HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTR 103

Oryza sativa subsp. japonica (taxid: 39947)

>sp|P82190|RK27_SPIOL 50S ribosomal protein L27, chloroplastic (Fragment) OS=Spinacia oleracea GN=RPL27 PE=1 SV=1

 Score = 85.5 bits (210), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/54 (79%), Positives = 48/54 (88%), Gaps = 3/54 (5%)

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AHKKGAGSTKNGRDS+GQRLGVKI+GDQVAKPGAII+RQRGTK   GK  G+ +
Sbjct: 1   AHKKGAGSTKNGRDSKGQRLGVKIYGDQVAKPGAIIIRQRGTKFHPGKNVGIGK 54

Spinacia oleracea (taxid: 3562)

>sp|A8Z619|RL27_SULMW 50S ribosomal protein L27 OS=Sulcia muelleri (strain GWSS) GN=rpmA PE=3 SV=1

 Score = 70.9 bits (172), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 39/43 (90%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GS++NGRDS  +RLGVK+FG Q+AKPG+II+RQRGTK
Sbjct: 2  AHKKGVGSSRNGRDSFSKRLGVKLFGGQIAKPGSIIIRQRGTK 44

Sulcia muelleri (strain GWSS) (taxid: 444179)

>sp|Q1LSJ8|RL27_BAUCH 50S ribosomal protein L27 OS=Baumannia cicadellinicola subsp. Homalodisca coagulata GN=rpmA PE=3 SV=1

 Score = 69.7 bits (169), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 37/43 (86%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKK  GST+NGRDS  +RLGVKIFG Q+AK G+II+RQRGTK
Sbjct: 2  AHKKAGGSTRNGRDSESKRLGVKIFGHQIAKAGSIIIRQRGTK 44

Baumannia cicadellinicola subsp. Homalodisca coagulata (taxid: 374463)

>sp|B7JZA3|RL27_CYAP8 50S ribosomal protein L27 OS=Cyanothece sp. (strain PCC 8801) GN=rpmA PE=3 SV=1

 Score = 69.3 bits (168), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 33/43 (76%), Positives = 36/43 (83%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GST+NGRDSR QRLGVK +G QV K G I+VRQRGTK
Sbjct: 2  AHKKGTGSTRNGRDSRAQRLGVKRYGGQVVKAGNILVRQRGTK 44

Cyanothece sp. (strain PCC 8801) (taxid: 41431)

>sp|B1WWL8|RL27_CYAA5 50S ribosomal protein L27 OS=Cyanothece sp. (strain ATCC 51142) GN=rpmA PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK
Sbjct: 2  AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTK 44

Cyanothece sp. (strain ATCC 51142) (taxid: 43989)

>sp|Q4G3B1|RK27_EMIHU 50S ribosomal protein L27, chloroplastic OS=Emiliania huxleyi GN=rpl27 PE=3 SV=1

 Score = 68.2 bits (165), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/41 (73%), Positives = 35/41 (85%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRG 96
          AHKKGAGSTKNGRDS  +RLGVK++G+Q  K G II+RQRG
Sbjct: 2  AHKKGAGSTKNGRDSNSKRLGVKVYGNQAVKAGGIIIRQRG 42

Emiliania huxleyi (taxid: 2903)

>sp|B0JQG5|RL27_MICAN 50S ribosomal protein L27 OS=Microcystis aeruginosa (strain NIES-843) GN=rpmA PE=3 SV=1

 Score = 67.8 bits (164), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 32/43 (74%), Positives = 36/43 (83%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GST+NGRDSR QRLGVK +G QV K G I++RQRGTK
Sbjct: 2  AHKKGTGSTRNGRDSRSQRLGVKRYGGQVVKAGNILIRQRGTK 44

Microcystis aeruginosa (strain NIES-843) (taxid: 449447)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
15237524	198	50S ribosomal protein L27 [Arabidopsis t	0.919	0.520	0.699	3e-26
229893934	198	auxin-repressed protein 1 [Brassica rapa	0.928	0.525	0.692	4e-26
297805558	198	hypothetical protein ARALYDRAFT_493880 [	0.919	0.520	0.672	2e-25
21553582	196	50S ribosomal protein L27 [Arabidopsis t	0.919	0.525	0.681	2e-25
343173028	170	50S ribosomal protein L27, partial [Sile	0.901	0.594	0.666	8e-24
8698897	129	ribosomal protein L27 precursor [Pyrus p	0.982	0.852	0.619	1e-23
218189635	195	hypothetical protein OsI_04988 [Oryza sa	0.848	0.487	0.637	2e-23
226490938	180	LOC100283825 [Zea mays] gi|195637478|gb|	0.830	0.516	0.606	1e-22
266936	179	RecName: Full=50S ribosomal protein L27,	0.866	0.541	0.697	1e-22
148909252	194	unknown [Picea sitchensis]	0.919	0.530	0.657	2e-22

>gi|15237524|ref|NP_198911.1| 50S ribosomal protein L27 [Arabidopsis thaliana] gi|20139726|sp|Q9FLN4.1|RK27_ARATH RecName: Full=50S ribosomal protein L27, chloroplastic; AltName: Full=CL27; Flags: Precursor gi|189096146|pdb|3BBO|X Chain X, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome gi|9759141|dbj|BAB09697.1| 50S ribosomal protein L27 [Arabidopsis thaliana] gi|15028249|gb|AAK76713.1| putative 50S ribosomal protein L27 [Arabidopsis thaliana] gi|21436345|gb|AAM51342.1| putative 50S ribosomal protein L27 [Arabidopsis thaliana] gi|332007235|gb|AED94618.1| 50S ribosomal protein L27 [Arabidopsis thaliana]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 79/113 (69%), Positives = 90/113 (79%), Gaps = 10/113 (8%)

Query: 1   MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPK-SVTVSLPPTS---PLPLTIESA 56
           MAT SMS +LIG+FKGLSLSS+SS    +GD +  PK S TV+LP  +   P+PLTIESA
Sbjct: 3   MAT-SMSLNLIGAFKGLSLSSTSSFL--RGDLSFSPKTSFTVTLPLENLQAPIPLTIESA 59

Query: 57  HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK   GK  G+ +
Sbjct: 60  HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|229893934|gb|ACQ90306.1| auxin-repressed protein 1 [Brassica rapa subsp. pekinensis]

 Score =  121 bits (304), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 79/114 (69%), Positives = 90/114 (78%), Gaps = 10/114 (8%)

Query: 1   MATA-SMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPK-SVTVSLPPT---SPLPLTIES 55
           MA A SMS +LIG+FKGLSLSS+SS    +GD  + PK S TV+LP     +P+PLTIES
Sbjct: 1   MAIATSMSLNLIGAFKGLSLSSTSSFL--RGDLNLNPKTSFTVTLPLEKLQAPVPLTIES 58

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK   GK  G+ +
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112

Source: Brassica rapa subsp. pekinensis

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805558|ref|XP_002870663.1| hypothetical protein ARALYDRAFT_493880 [Arabidopsis lyrata subsp. lyrata] gi|297316499|gb|EFH46922.1| hypothetical protein ARALYDRAFT_493880 [Arabidopsis lyrata subsp. lyrata]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 76/113 (67%), Positives = 89/113 (78%), Gaps = 10/113 (8%)

Query: 1   MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPKSV-TVSLPPTS---PLPLTIESA 56
           MAT SM+ +L+G+FKGLSLSS+SS    +GD    PK+  TV+LP  +   P+PLTIESA
Sbjct: 3   MAT-SMTLNLVGAFKGLSLSSTSSFL--RGDLNFSPKTTFTVTLPLENLQAPIPLTIESA 59

Query: 57  HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK   GK  G+ +
Sbjct: 60  HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21553582|gb|AAM62675.1| 50S ribosomal protein L27 [Arabidopsis thaliana]

 Score =  119 bits (298), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 77/113 (68%), Positives = 90/113 (79%), Gaps = 10/113 (8%)

Query: 1   MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPKSV-TVSLPPTS---PLPLTIESA 56
           MAT SMS +LIG+FKGLSLSS+SS    +G+ +  PK+  TV+LP  +   P+PLTIESA
Sbjct: 1   MAT-SMSLNLIGAFKGLSLSSTSSFL--RGELSFSPKTTFTVTLPLENLQAPVPLTIESA 57

Query: 57  HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK   GK  G+ +
Sbjct: 58  HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|343173028|gb|AEL99217.1| 50S ribosomal protein L27, partial [Silene latifolia] gi|343173030|gb|AEL99218.1| 50S ribosomal protein L27, partial [Silene latifolia]

 Score =  114 bits (285), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 76/114 (66%), Positives = 90/114 (78%), Gaps = 13/114 (11%)

Query: 1   MATASMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPKSVTVSLP-----PTSPLPLTIES 55
           MAT SM+ +L+ SFKGLSLSSSSSSSF+KG+F     + T++LP     P  P  LTIES
Sbjct: 3   MAT-SMALNLMVSFKGLSLSSSSSSSFVKGEFG----APTLTLPAQSIQPLLPYGLTIES 57

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AHKKGAGSTKNGRDS+GQRLGVKI+GDQ+AKPGAII+RQRGTK   GK  G+ +
Sbjct: 58  AHKKGAGSTKNGRDSKGQRLGVKIYGDQLAKPGAIIIRQRGTKVHPGKNVGIGK 111

Source: Silene latifolia

Species: Silene latifolia

Genus: Silene

Family: Caryophyllaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|8698897|gb|AAF78514.1|AF195213_1 ribosomal protein L27 precursor [Pyrus pyrifolia]

 Score =  113 bits (283), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 75/121 (61%), Positives = 88/121 (72%), Gaps = 11/121 (9%)

Query: 1   MATASMSASLIGSFKGLSL-----SSSSSSSFLKGDFTVCPKSVTVSLPPTSP--LPLTI 53
           MA ASMS +++G+F+GLSL     SSSSSSSF +GD         +SL  + P  LPLTI
Sbjct: 1   MAVASMSFNIVGAFRGLSLRPTSTSSSSSSSFFRGDLGSLQLGPKLSLVSSGPQRLPLTI 60

Query: 54  ESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGL-ARTIQ 109
           ++AHKKGAGSTKNGRDS+GQRLGVKI+GDQV K G+IIVRQRGTK   GK  G  ART  
Sbjct: 61  QNAHKKGAGSTKNGRDSKGQRLGVKIYGDQVTKAGSIIVRQRGTKFHAGKECGASARTTP 120

Query: 110 Y 110
           Y
Sbjct: 121 Y 121

Source: Pyrus pyrifolia

Species: Pyrus pyrifolia

Genus: Pyrus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189635|gb|EEC72062.1| hypothetical protein OsI_04988 [Oryza sativa Indica Group]

 Score =  112 bits (280), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/102 (63%), Positives = 79/102 (77%), Gaps = 7/102 (6%)

Query: 4   ASMSASLIGSFKGLSLSS----SSSSSFLKGDFTVC--PKSVTVSLPPTSPLP-LTIESA 56
           ASM+ +L+G+FKG+SLSS    SSS+SFL+ D         V + +P T P+  LTI+ A
Sbjct: 2   ASMAFTLVGAFKGMSLSSPCHYSSSASFLRADRVSLSVGGGVGMGVPMTMPVRRLTIQMA 61

Query: 57  HKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
           HKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAII+RQRGT+
Sbjct: 62  HKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIIRQRGTR 103

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226490938|ref|NP_001150195.1| LOC100283825 [Zea mays] gi|195637478|gb|ACG38207.1| 50S ribosomal protein L27 [Zea mays]

 Score =  110 bits (275), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 57/94 (60%), Positives = 71/94 (75%), Gaps = 1/94 (1%)

Query: 6  MSASLIGSFKGLSLSSSSSSSFLKGDFTVCPKSVTVSLP-PTSPLPLTIESAHKKGAGST 64
          M+ +L G+FKGLSL  +++SSF +GD           +P P     LTI+ AHKKGAGST
Sbjct: 1  MAFALAGAFKGLSLVPATTSSFPRGDRASLSVGGAAGVPVPVPARRLTIQMAHKKGAGST 60

Query: 65 KNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          KNGRDS+GQRLGVKI+GDQ+AKPGAII+RQRGT+
Sbjct: 61 KNGRDSKGQRLGVKIYGDQLAKPGAIIIRQRGTR 94

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|266936|sp|P30155.1|RK27_TOBAC RecName: Full=50S ribosomal protein L27, chloroplastic; AltName: Full=CL27; Flags: Precursor gi|170306|gb|AAA34104.1| ribosomal protein L27 [Nicotiana tabacum] gi|170326|gb|AAA34115.1| ribosomal protein L27 [Nicotiana tabacum]

 Score =  110 bits (274), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 76/109 (69%), Positives = 84/109 (77%), Gaps = 12/109 (11%)

Query: 5   SMSASLIGSFKGLSLSSSSSSSFLKGDF----TVCPKSVTVSLPPTSPLPLTIESAHKKG 60
           ++S SL+G+FKGLSL+SSSS    KGDF     V PK  +VS P  SPL  TIESAHKKG
Sbjct: 2   AVSFSLVGAFKGLSLASSSSFL--KGDFGAAFPVAPK-FSVSFPLKSPL--TIESAHKKG 56

Query: 61  AGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AGSTKNGRDS GQRLGVKIFGDQVAKPG+IIVRQRGTK   GK  GL +
Sbjct: 57  AGSTKNGRDSPGQRLGVKIFGDQVAKPGSIIVRQRGTKFHPGKNVGLGK 105

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|148909252|gb|ABR17726.1| unknown [Picea sitchensis]

 Score =  109 bits (273), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 75/114 (65%), Positives = 89/114 (78%), Gaps = 11/114 (9%)

Query: 1   MATASM-SASLIGSFKGLSLSSSSSSS-FLKGDF---TVCPKSVTVSLPPTSPLPLTIES 55
           M TA++ S +L+G+FKGLS+SS SSSS +LKGD    TV  +S TVS P    +PL IE+
Sbjct: 1   MGTAAVASCNLVGAFKGLSISSGSSSSSYLKGDLKLVTVGQRS-TVSFPLK--VPLIIEA 57

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AHKKG+GSTKNGRDS G+RLGVKI+GDQVAKPG+IIVRQRGTK   GK  GL R
Sbjct: 58  AHKKGSGSTKNGRDSIGKRLGVKIYGDQVAKPGSIIVRQRGTKFHAGKNVGLGR 111

Source: Picea sitchensis

Species: Picea sitchensis

Genus: Picea

Family: Pinaceae

Order: Coniferales

Class: Coniferopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	112
TAIR|locus:2162971	198	RPL27 "ribosomal protein large	0.482	0.272	0.824	1.1e-18
UNIPROTKB|P66127	86	rpmA "50S ribosomal protein L2	0.383	0.5	0.720	1.3e-11
TIGR_CMR|APH_0698	91	APH_0698 "ribosomal protein L2	0.455	0.560	0.611	7.4e-11
TIGR_CMR|DET_1326	84	DET_1326 "ribosomal protein L2	0.455	0.607	0.611	1.5e-10
TIGR_CMR|CHY_0368	88	CHY_0368 "ribosomal protein L2	0.383	0.488	0.651	2e-10
UNIPROTKB|P0A7L8	85	rpmA "50S ribosomal subunit pr	0.383	0.505	0.674	2.5e-10
TIGR_CMR|ECH_0546	88	ECH_0546 "ribosomal protein L2	0.455	0.579	0.592	2.5e-10
TIGR_CMR|CPS_4511	85	CPS_4511 "ribosomal protein L2	0.383	0.505	0.674	4.1e-10
TIGR_CMR|GSU_3235	85	GSU_3235 "ribosomal protein L2	0.383	0.505	0.651	4.1e-10
UNIPROTKB|Q9KUS9	86	rpmA "50S ribosomal protein L2	0.383	0.5	0.674	5.2e-10

TAIR|locus:2162971 RPL27 "ribosomal protein large subunit 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 225 (84.3 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 47/57 (82%), Positives = 50/57 (87%)

Query:    53 IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
             IESAHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK   GK  G+ +
Sbjct:    56 IESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112

GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS

GO:0005622 "intracellular" evidence=IEA

GO:0005840 "ribosome" evidence=IEA;ISS

GO:0006412 "translation" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009579 "thylakoid" evidence=IDA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

UNIPROTKB|P66127 rpmA "50S ribosomal protein L27" [Mycobacterium tuberculosis (taxid:1773)]

 Score = 158 (60.7 bits), Expect = 1.3e-11, P = 1.3e-11
 Identities = 31/43 (72%), Positives = 35/43 (81%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
             AHKKGA S++NGRDS  QRLGVK +G QV K G I+VRQRGTK
Sbjct:     2 AHKKGASSSRNGRDSAAQRLGVKRYGGQVVKAGEILVRQRGTK 44

GO:0005618 "cell wall" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0040007 "growth" evidence=IMP

TIGR_CMR|APH_0698 APH_0698 "ribosomal protein L27" [Anaplasma phagocytophilum HZ (taxid:212042)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 33/54 (61%), Positives = 39/54 (72%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
             A KK  GS+ NGRDSRG+RLGVK FG ++  PG II+RQRGTK   GK  G+ R
Sbjct:     2 ATKKSGGSSCNGRDSRGRRLGVKKFGSELVIPGNIIIRQRGTKYHPGKNVGIGR 55

GO:0000315 "organellar large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|DET_1326 DET_1326 "ribosomal protein L27" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 33/54 (61%), Positives = 38/54 (70%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
             AHKKGAGSTKNGRDS+ + LGVK F  +    G IIVRQRGT+   G+  GL R
Sbjct:     2 AHKKGAGSTKNGRDSKPKMLGVKRFAGEKVHSGTIIVRQRGTRIHPGENVGLGR 55

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|CHY_0368 CHY_0368 "ribosomal protein L27" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 28/43 (65%), Positives = 34/43 (79%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
             AHKKG GS+KNGRDS+ +RLGVK +  Q    G+I+VRQRGTK
Sbjct:     2 AHKKGVGSSKNGRDSKAKRLGVKRYAGQFVTAGSILVRQRGTK 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

UNIPROTKB|P0A7L8 rpmA "50S ribosomal subunit protein L27" [Escherichia coli K-12 (taxid:83333)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 29/43 (67%), Positives = 33/43 (76%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
             AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTK
Sbjct:     2 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK 44

GO:0006412 "translation" evidence=IEA

GO:0003735 "structural constituent of ribosome" evidence=IEA

GO:0030529 "ribonucleoprotein complex" evidence=IEA

GO:0019843 "rRNA binding" evidence=IEA

GO:0005840 "ribosome" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000049 "tRNA binding" evidence=IEA

TIGR_CMR|ECH_0546 ECH_0546 "ribosomal protein L27" [Ehrlichia chaffeensis str. Arkansas (taxid:205920)]

 Score = 146 (56.5 bits), Expect = 2.5e-10, P = 2.5e-10
 Identities = 32/54 (59%), Positives = 38/54 (70%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
             A KK  GS+ NGRDSRG+RLGVK FG +   PG II+RQRGTK   GK  G+ +
Sbjct:     2 ATKKSGGSSGNGRDSRGRRLGVKKFGSEKVIPGNIIIRQRGTKYHPGKNVGIGK 55

GO:0000315 "organellar large ribosomal subunit" evidence=ISS

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

TIGR_CMR|CPS_4511 CPS_4511 "ribosomal protein L27" [Colwellia psychrerythraea 34H (taxid:167879)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 29/43 (67%), Positives = 33/43 (76%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
             AHKK AGST+NGRDS  +RLGVK FG +    G IIVRQRGT+
Sbjct:     2 AHKKAAGSTRNGRDSEAKRLGVKRFGGESVLAGNIIVRQRGTR 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0015934 "large ribosomal subunit" evidence=ISS

TIGR_CMR|GSU_3235 GSU_3235 "ribosomal protein L27" [Geobacter sulfurreducens PCA (taxid:243231)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 28/43 (65%), Positives = 32/43 (74%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
             AHKKG GST+NGRDS  +RLG K FG +  K G II RQRGT+
Sbjct:     2 AHKKGVGSTRNGRDSESKRLGCKKFGGETVKAGNIIYRQRGTQ 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

GO:0042254 "ribosome biogenesis" evidence=ISS

UNIPROTKB|Q9KUS9 rpmA "50S ribosomal protein L27" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 143 (55.4 bits), Expect = 5.2e-10, P = 5.2e-10
 Identities = 29/43 (67%), Positives = 32/43 (74%)

Query:    56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
             AHKK  GST+NGRDS  +RLGVK FG +    G IIVRQRGTK
Sbjct:     2 AHKKAGGSTRNGRDSESKRLGVKRFGGESVLAGNIIVRQRGTK 44

GO:0003735 "structural constituent of ribosome" evidence=ISS

GO:0006412 "translation" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A8Z619	RL27_SULMW	No assigned EC number	0.7441	0.3839	0.5119	yes	no
A0QDG9	RL27_MYCA1	No assigned EC number	0.7441	0.3839	0.4886	yes	no
Q1R0C1	RL27_CHRSD	No assigned EC number	0.7209	0.3839	0.5058	yes	no
Q8DMF2	RL27_THEEB	No assigned EC number	0.7441	0.3839	0.5	yes	no
A5VYC5	RL27_PSEP1	No assigned EC number	0.7209	0.3839	0.5058	yes	no
Q022G4	RL27_SOLUE	No assigned EC number	0.7441	0.3839	0.5058	yes	no
Q9CBZ3	RL27_MYCLE	No assigned EC number	0.7441	0.3839	0.4886	yes	no
Q1IF14	RL27_PSEE4	No assigned EC number	0.7209	0.3839	0.5058	yes	no
B7JZA3	RL27_CYAP8	No assigned EC number	0.7674	0.3839	0.4942	yes	no
Q9Z3H6	RL27_SYNE7	No assigned EC number	0.7441	0.3839	0.4886	yes	no
B2HMG2	RL27_MYCMM	No assigned EC number	0.7441	0.3839	0.4886	yes	no
B8ZRN4	RL27_MYCLB	No assigned EC number	0.7441	0.3839	0.4886	yes	no
Q88Q09	RL27_PSEPK	No assigned EC number	0.7209	0.3839	0.5058	yes	no
B0JQG5	RL27_MICAN	No assigned EC number	0.7441	0.3839	0.4831	yes	no
Q1GZ52	RL27_METFK	No assigned EC number	0.7209	0.3839	0.5058	yes	no
B1WWL8	RL27_CYAA5	No assigned EC number	0.7441	0.3839	0.4942	yes	no
A6H1P8	RL27_FLAPJ	No assigned EC number	0.7209	0.3839	0.5	yes	no
Q2VZU3	RL27_MAGSA	No assigned EC number	0.7209	0.3839	0.4831	yes	no
B2IV09	RL27_NOSP7	No assigned EC number	0.7209	0.3839	0.4387	yes	no
B0KMF5	RL27_PSEPG	No assigned EC number	0.7209	0.3839	0.5058	yes	no
C1F354	RL27_ACIC5	No assigned EC number	0.7441	0.3839	0.4886	yes	no
B1XPD9	RL27_SYNP2	No assigned EC number	0.7209	0.3839	0.4886	yes	no
Q5N598	RL27_SYNP6	No assigned EC number	0.7441	0.3839	0.4886	yes	no
A6L8T0	RL27_PARD8	No assigned EC number	0.7380	0.375	0.4772	yes	no
Q1LSJ8	RL27_BAUCH	No assigned EC number	0.7441	0.3839	0.5119	yes	no
Q10ZG7	RL27_TRIEI	No assigned EC number	0.7209	0.3839	0.4526	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	RPL27	RPL27 (RIBOSOMAL PROTEIN LARGE SUBUNIT 27); structural constituent of ribosome; RIBOSOMAL PROTEIN LARGE SUBUNIT 27 (RPL27); FUNCTIONS IN- structural constituent of ribosome; INVOLVED IN- translation; LOCATED IN- thylakoid, ribosome, chloroplast stroma, chloroplast; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Ribosomal protein L27 (InterPro-IPR001684), Ribosomal protein L27, conserved site (InterPro-IPR018261); BEST Arabidopsis thaliana protein match is- ribosomal protein L27 family protein (TAIR-AT5G15220.1); Has 5099 Blast hits to [...] (198 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	RPL21	50S ribosomal protein L21, chloroplast / CL21 (RPL21); 50S ribosomal protein L21, chloroplast / [...] (220 aa)	•			•	•		•		0.977
	AT5G54600	50S ribosomal protein L24, chloroplast (CL24); 50S ribosomal protein L24, chloroplast (CL24); F [...] (198 aa)				•	•		•		0.965
	RPL3A	ribosomal protein L3 family protein; ribosomal protein L3 family protein; FUNCTIONS IN- structu [...] (271 aa)	•			•	•		•		0.959
	AT3G13120	30S ribosomal protein S10, chloroplast, putative; 30S ribosomal protein S10, chloroplast, putat [...] (191 aa)				•			•		0.944
	PSRP6	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6); plastid-specific ribosomal protein 6 precurso [...] (106 aa)				•			•		0.943
	AT3G63490	ribosomal protein L1 family protein; ribosomal protein L1 family protein; FUNCTIONS IN- structu [...] (346 aa)			•	•	•		•		0.938
	AT4G01310	ribosomal protein L5 family protein; ribosomal protein L5 family protein; FUNCTIONS IN- structu [...] (262 aa)	•		•	•	•		•		0.936
	AT2G33800	ribosomal protein S5 family protein; ribosomal protein S5 family protein; FUNCTIONS IN- structu [...] (303 aa)	•			•			•		0.932
	emb2394	emb2394 (embryo defective 2394); structural constituent of ribosome; embryo defective 2394 (emb [...] (223 aa)	•			•	•		•		0.925
	PRPL11	PRPL11 (PLASTID RIBOSOMAL PROTEIN L11); structural constituent of ribosome; mutant has Decrease [...] (222 aa)			•	•	•		•		0.924

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	112
PRK05435	82	PRK05435, rpmA, 50S ribosomal protein L27; Validat	3e-26
pfam01016	80	pfam01016, Ribosomal_L27, Ribosomal L27 protein	1e-23
CHL00121	86	CHL00121, rpl27, ribosomal protein L27; Reviewed	2e-21
COG0211	87	COG0211, RpmA, Ribosomal protein L27 [Translation,	2e-21
TIGR00062	83	TIGR00062, L27, ribosomal protein L27	2e-16

>gnl|CDD|235464 PRK05435, rpmA, 50S ribosomal protein L27; Validated

 Score = 92.4 bits (231), Expect = 3e-26
 Identities = 32/43 (74%), Positives = 34/43 (79%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GST+NGRDS  +RLGVK FG Q  K G IIVRQRGTK
Sbjct: 2  AHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTK 44

Length = 82

>gnl|CDD|201553 pfam01016, Ribosomal_L27, Ribosomal L27 protein

 Score = 86.0 bits (214), Expect = 1e-23
 Identities = 34/43 (79%), Positives = 35/43 (81%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GSTKNGRDS G+RLGVK FG Q  K G IIVRQRGTK
Sbjct: 1  AHKKGGGSTKNGRDSNGKRLGVKKFGGQFVKAGNIIVRQRGTK 43

Length = 80

>gnl|CDD|214370 CHL00121, rpl27, ribosomal protein L27; Reviewed

 Score = 80.4 bits (199), Expect = 2e-21
 Identities = 31/45 (68%), Positives = 35/45 (77%)

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGK 100
           AHKKGAGSTKNGRDS  +RLGVK FG +    G I++RQRGTK K
Sbjct: 2   AHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFK 46

Length = 86

>gnl|CDD|223289 COG0211, RpmA, Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

 Score = 80.3 bits (199), Expect = 2e-21
 Identities = 32/43 (74%), Positives = 35/43 (81%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GST+NGRDS  +RLGVK FG Q  K G+IIVRQRGTK
Sbjct: 2  AHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTK 44

Length = 87

>gnl|CDD|232803 TIGR00062, L27, ribosomal protein L27

 Score = 68.2 bits (167), Expect = 2e-16
 Identities = 30/43 (69%), Positives = 33/43 (76%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          A KKG GSTKNGRDS  +RLGVK  G Q  + G+IIVRQRGTK
Sbjct: 2  ATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTK 44

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain [Protein synthesis, Ribosomal proteins: synthesis and modification]. Length = 83

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	112
KOG4600	144	consensus Mitochondrial ribosomal protein MRP7 (L2	100.0
COG0211	87	RpmA Ribosomal protein L27 [Translation, ribosomal	100.0
PRK05435	82	rpmA 50S ribosomal protein L27; Validated	100.0
CHL00121	86	rpl27 ribosomal protein L27; Reviewed	100.0
TIGR00062	83	L27 ribosomal protein L27. Eubacterial, chloroplas	100.0
PF01016	81	Ribosomal_L27: Ribosomal L27 protein; InterPro: IP	99.97
PF14382	39	ECR1_N: Exosome complex exonuclease RRP4 N-termina	80.84

>KOG4600 consensus Mitochondrial ribosomal protein MRP7 (L2) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=8.3e-36  Score=224.57  Aligned_cols=84  Identities=51%  Similarity=0.699  Sum_probs=74.8

Q ss_pred             eeeeeeccCcccceecCCcccccCcceecCCCCCCcceeEEeeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEe
Q 033772           14 FKGLSLSSSSSSSFLKGDFTVCPKSVTVSLPPTSPLPLTIESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVR   93 (112)
Q Consensus        14 f~glsl~s~~sssf~~g~~~~~~~~~~~~~p~~~~~~~~ir~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvR   93 (112)
                      |+.|.|++  +|+++.|+.+.+             ..++||+|+||++|||||+|||+|||||||+|+||+|+|||||+|
T Consensus         2 ~~~l~l~t--as~~~~~~ss~~-------------~~l~vR~AtKk~aGStKN~~dS~grrlGvKk~egq~V~~G~IIvr   66 (144)
T KOG4600|consen    2 VNALRLST--ASSSLDGSSSGL-------------SFLAVRWATKKGAGSTKNGRDSAGRRLGVKKYEGQSVIPGNIIVR   66 (144)
T ss_pred             ccceecch--hhhhhcCCCCcc-------------eeeeeeeecccccCccccCCCCCcccccceecCCeeeecccEEEE
Confidence            57788877  555666665322             467899999999999999999999999999999999999999999


Q ss_pred             ecCCC---CCceeecccc-eeeC
Q 033772           94 QRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        94 QRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||   |+|||||||| ||||
T Consensus        67 QRgtkfHPG~nVGiGKDhtifaL   89 (144)
T KOG4600|consen   67 QRGTKFHPGDNVGIGKDHTIFAL   89 (144)
T ss_pred             ecccccCCCcccccCCcceEEEe
Confidence            99999   9999999999 9997

>COG0211 RpmA Ribosomal protein L27 [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=2.6e-34  Score=201.99  Aligned_cols=58  Identities=60%  Similarity=0.898  Sum_probs=57.3

Q ss_pred             eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||++|||+|||||++||||+|++|||+|.+|+||||||||+   |+|||+|+|| ||||
T Consensus         1 mA~KKg~GSt~NgRDS~~krLGvK~~~Gq~v~aG~IivRQRGTk~hpG~NVG~GkDhTlFAl   62 (87)
T COG0211           1 MAHKKGGGSTRNGRDSESKRLGVKKFGGQFVKAGSIIVRQRGTKFHPGVNVGRGKDHTLFAL   62 (87)
T ss_pred             CcccccccccccCccccccccceeeeCCeEEecccEEEEeccccccCCcccccCCCceEEEe
Confidence            79999999999999999999999999999999999999999999   9999999999 9996

>PRK05435 rpmA 50S ribosomal protein L27; Validated

Probab=100.00  E-value=9.4e-34  Score=197.25  Aligned_cols=58  Identities=60%  Similarity=0.888  Sum_probs=57.2

Q ss_pred             eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||++|||+|||||+|||||||+++||+|.||+||||||||+   |+||+||||| |||+
T Consensus         1 mA~KK~~GStkNgrdS~~krLGvK~~~g~~V~~G~IivRQRGtk~~PG~nVg~GrD~TlfA~   62 (82)
T PRK05435          1 MAHKKGGGSTRNGRDSESKRLGVKRFGGQFVKAGNIIVRQRGTKFHPGVNVGRGKDHTLFAL   62 (82)
T ss_pred             CCcccccCcCCCCCCCCcccceeEecCCEEEcCCcEEEEeCCCeECCCCCEeecCCceEEEe
Confidence            79999999999999999999999999999999999999999999   9999999999 9996

>CHL00121 rpl27 ribosomal protein L27; Reviewed

Probab=100.00  E-value=8.6e-34  Score=198.91  Aligned_cols=58  Identities=59%  Similarity=0.895  Sum_probs=57.3

Q ss_pred             eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||++|||+|||||+|||||||+++||+|.||+||||||||+   |+|||||||| |||+
T Consensus         1 mA~KK~~GStkNgrdS~~KrLGvK~~~gq~V~~G~IivRQRGtk~hPG~NVg~GrD~TlfAl   62 (86)
T CHL00121          1 MAHKKGAGSTKNGRDSNAKRLGVKRFGGEKVSAGNILIRQRGTKFKPGLNVGCGKDFTLYAL   62 (86)
T ss_pred             CCcccccCcCCCCCCCCcccceeEEcCCEEEcCCcEEEEcCCCeECCCCcccccCCceEEEc
Confidence            79999999999999999999999999999999999999999999   9999999999 9996

>TIGR00062 L27 ribosomal protein L27

Probab=100.00  E-value=1.3e-33  Score=196.93  Aligned_cols=58  Identities=57%  Similarity=0.848  Sum_probs=57.2

Q ss_pred             eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||++|||+|||||+|||||||+++||+|.||+||||||||+   |+||+||||| |||+
T Consensus         1 ~A~Kk~~GSt~NgrdS~~krLGvK~~~gq~V~~G~IivRQRGtk~hPG~nVg~GrD~TlfAl   62 (83)
T TIGR00062         1 MATKKGVGSTKNGRDSEAKRLGVKRAGGQFVRAGSIIVRQRGTKFHPGNNVGMGKDHTLFAL   62 (83)
T ss_pred             CCcccccCcCCCCCCCCCccceeEecCCEEEcCCcEEEEcCCceECCCCcccccCCCeEEEe
Confidence            79999999999999999999999999999999999999999999   9999999999 9996

Eubacterial, chloroplast, and mitochondrial. Mitochondrial members have an additional C-terminal domain.

>PF01016 Ribosomal_L27: Ribosomal L27 protein; InterPro: IPR001684 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=99.97  E-value=5e-33  Score=192.85  Aligned_cols=57  Identities=65%  Similarity=0.962  Sum_probs=51.6

Q ss_pred             eeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        56 A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      ||||++|||+|||||+|||||||+++||+|.||+||||||||+   |+||+||||| |||+
T Consensus         1 A~KK~~GSt~NgrdS~~krlGvK~~~G~~V~~G~IivRQRgtk~hPG~NVg~GrD~TLfAl   61 (81)
T PF01016_consen    1 AHKKGGGSTKNGRDSNPKRLGVKKFGGQFVKAGNIIVRQRGTKFHPGENVGMGRDHTLFAL   61 (81)
T ss_dssp             --SSSSSSSS--S-STTTTSEESSSTTCEESSTSEEEEBSSSSSEEBTTEEEETTSEEEES
T ss_pred             CCccccccccCCCCCCCcccEEEEeCCEEEcCCCEEEEeCCCcCcCCCCEEECCCCcEEEe
Confidence            8999999999999999999999999999999999999999999   9999999999 9996

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. L27 is a protein from the large (50S) subunit; it is essential for ribosome function, but its exact role is unclear. It belongs to a family of ribosomal proteins, examples of which are found in bacteria, chloroplasts of plants and red algae and the mitochondria of fungi (e.g. MRP7 from yeast mitochondria). The schematic relationship between these groups of proteins is shown below. Bacterial L27 Nxxxxxxxxx Algal L27 Nxxxxxxxxx Plant L27 tttttNxxxxxxxxxxxxx Yeast MRP7 tttNxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx 't': transit peptide. 'N': N-terminal of mature protein. ; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZJQ_T 2ZJP_T 3PIP_T 3DLL_T 3PIO_T 1Y69_U 3CF5_T 2ZJR_T 1VSA_U 3PYT_W ....

>PF14382 ECR1_N: Exosome complex exonuclease RRP4 N-terminal region; PDB: 2NN6_I 3M7N_C 2BA1_A 3M85_C

Probab=80.84  E-value=2.3  Score=25.73  Aligned_cols=28  Identities=18%  Similarity=0.144  Sum_probs=20.6

Q ss_pred             EeecCcEEEeecCCC-CCceeecccc-eeeC
Q 033772           84 VAKPGAIIVRQRGTK-GKMWGLARTI-QYSL  112 (112)
Q Consensus        84 ~V~~G~IIvRQRGtk-G~nVg~GrD~-lfAl  112 (112)
                      .|.||+.|....... |+++.. +|. |||.
T Consensus         1 iV~PG~~l~~~~e~~~G~GTY~-~~g~I~as   30 (39)
T PF14382_consen    1 IVVPGDRLGSSEEYMPGHGTYV-RDGNIYAS   30 (39)
T ss_dssp             EE-TT-EEEETTTSEESTTEEE-ETTEEEES
T ss_pred             CCCCCCEeecCCCEecCCCEEE-eCCEEEEE
Confidence            488999999987666 999988 666 9873

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	112
3bbo_X	198	Homology Model For The Spinach Chloroplast 50s Subu		1e-19
1vsa_U	85	Crystal Structure Of A 70s Ribosome-Trna Complex Re		2e-10
3mrz_W	84	Recognition Of The Amber Stop Codon By Release Fact		3e-10
1nkw_U	91	Crystal Structure Of The Large Ribosomal Subunit Fr		3e-10
1pnu_U	86	Crystal Structure Of A Streptomycin Dependent Ribos		4e-10
1v8q_A	85	Crystal Structure Of Ribosomal Protein L27 From The		5e-10
1vs6_W	85	Crystal Structure Of The Bacterial Ribosome From Es		1e-09
1p85_U	84	Real Space Refined Coordinates Of The 50s Subunit F		2e-09
2v47_0	85	Structure Of The Ribosome Recycling Factor Bound To		7e-09
3fik_W	79	Ternary Complex-Bound E.Coli 70s Ribosome. This Ent		3e-07
3tvh_3	77	Crystal Structure Analysis Of Ribosomal Decoding. T		1e-06
3pyo_W	76	Crystal Structure Of A Complex Containing Domain 3		3e-06
3r8s_W	76	Structures Of The Bacterial Ribosome In Classical A		3e-06
3tve_3	76	Crystal Structure Analysis Of Ribosomal Decoding. T		5e-06
3r8t_W	75	Structures Of The Bacterial Ribosome In Classical A		1e-05

>pdb|3BBO|X Chain X, Homology Model For The Spinach Chloroplast 50s Subunit Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome Length = 198

Iteration: 1
 Score = 91.3 bits (225), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 47/57 (82%), Positives = 50/57 (87%), Gaps = 3/57 (5%)
Query: 53  IESAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           IESAHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK   GK  G+ +
Sbjct: 56  IESAHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGK 112

>pdb|1VSA|U Chain U, Crystal Structure Of A 70s Ribosome-Trna Complex Reveals Functional Interactions And Rearrangements. This File, 1vsa, Contains The 50s Ribosome Subunit. 30s Ribosome Subunit Is In The File 2ow8 Length = 85

Iteration: 1
 Score = 60.5 bits (145), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI 108
           AHKKG GSTKNGRDS+ +RLGVK +  QV + G I+VRQRGT+   GK  G+ R  
Sbjct: 2   AHKKGLGSTKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDF 57

>pdb|3MRZ|W Chain W, Recognition Of The Amber Stop Codon By Release Factor Rf1. This Entry 3mrz Contains 50s Ribosomal Subunit. The 30s Ribosomal Subunit Can Be Found In Pdb Entry 3ms0. Molecule A In The Same Asymmetric Unit Is Deposited As 3mr8 (50s) And 3ms1 (30s). Length = 84

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI 108
           AHKKG GSTKNGRDS+ +RLGVK +  QV + G I+VRQRGT+   GK  G+ R  
Sbjct: 1   AHKKGLGSTKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDF 56

>pdb|1NKW|U Chain U, Crystal Structure Of The Large Ribosomal Subunit From Deinococcus Radiodurans Length = 91

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 35/45 (77%)
Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGK 100
           AHKKG GS+KNGRDS  + LGVK FG +V K G I+VRQRGTK K
Sbjct: 2   AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFK 46

>pdb|1PNU|U Chain U, Crystal Structure Of A Streptomycin Dependent Ribosome From Escherichia Coli, 50s Subunit Of 70s Ribosome. This File, 1pnu, Contains Only Molecules Of The 50s Ribosomal Subunit. The 30s Subunit, Mrna, P-Site Trna, And A-Site Trna Are In The Pdb File 1pns. Length = 86

Iteration: 1
 Score = 59.7 bits (143), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 31/45 (68%), Positives = 35/45 (77%)
Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTKGK 100
           AHKKG GS+KNGRDS  + LGVK FG +V K G I+VRQRGTK K
Sbjct: 1   AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFK 45

>pdb|1V8Q|A Chain A, Crystal Structure Of Ribosomal Protein L27 From Thermus Thermophilus Hb8 Length = 85

Iteration: 1
 Score = 59.3 bits (142), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 40/56 (71%), Gaps = 3/56 (5%)
Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI 108
           AHKKG GST+NGRDS+ +RLGVK +  QV + G I+VRQRGT+   GK  G+ R  
Sbjct: 2   AHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDF 57

>pdb|1VS6|W Chain W, Crystal Structure Of The Bacterial Ribosome From Escherichia Coli In Complex With The Antibiotic Kasugamyin At 3.5a Resolution. This File Contains The 50s Subunit Of One 70s Ribosome. The Entire Crystal Structure Contains Two 70s Ribosomes And Is Described In Remark 400. Length = 85

Iteration: 1
 Score = 57.8 bits (138), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 33/43 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTK
Sbjct: 2  AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK 44

>pdb|1P85|U Chain U, Real Space Refined Coordinates Of The 50s Subunit Fitted Into The Low Resolution Cryo-Em Map Of The Ef-G.Gtp State Of E. Coli 70s Ribosome Length = 84

Iteration: 1
 Score = 57.8 bits (138), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/43 (67%), Positives = 33/43 (76%)
Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTK
Sbjct: 1  AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK 43

>pdb|2V47|0 Chain 0, Structure Of The Ribosome Recycling Factor Bound To The Thermus Thermophilus 70s Ribosome With Mrna, Asl-Phe And Trna-Fmet (Part 2 Of 4). This File Contains The 50s Subunit For Molecule 1. Length = 85

Iteration: 1
 Score = 55.5 bits (132), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 30/56 (53%), Positives = 38/56 (67%), Gaps = 3/56 (5%)
Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI 108
           AHKK   ST+NGRDS+ +RLGVK +  QV + G I+VRQRGT+   GK  G+ R  
Sbjct: 2   AHKKALASTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDF 57

>pdb|3FIK|W Chain W, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry Consists Of The 50s Subunit. Length = 79

Iteration: 1
 Score = 50.4 bits (119), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 25/37 (67%), Positives = 29/37 (78%)
Query: 62 GSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          GST+NGRDS  +RLGVK FG +    G+IIVRQRGTK
Sbjct: 2  GSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK 38

>pdb|3TVH|3 Chain 3, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The Second 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 77

Iteration: 1
 Score = 47.8 bits (112), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 26/49 (53%), Positives = 34/49 (69%), Gaps = 3/49 (6%)
Query: 63  STKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI 108
           ST+NGRDS+ +RLGVK +  QV + G I+VRQRGT+   GK  G+ R  
Sbjct: 1   STRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDF 49

>pdb|3PYO|W Chain W, Crystal Structure Of A Complex Containing Domain 3 From The Psiv Igr Ires Rna Bound To The 70s Ribosome. This File Contains The 50s Subunit Of The First 70s Ribosome. Length = 76

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 26/48 (54%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 64  TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI 108
           TKNGRDS+ +RLGVK +  QV + G I+VRQRGT+   GK  G+ R  
Sbjct: 1   TKNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDF 48

>pdb|3R8S|W Chain W, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 76

Iteration: 1
 Score = 47.0 bits (110), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 23/35 (65%), Positives = 27/35 (77%)
Query: 64 TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          T+NGRDS  +RLGVK FG +    G+IIVRQRGTK
Sbjct: 1  TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK 35

>pdb|3TVE|3 Chain 3, Crystal Structure Analysis Of Ribosomal Decoding. This Entry Contains The 50s Ribosomal Subunit Of The First 70s Molecule In The Asymmetric Unit For The Cognate Trna-Leu Complex Length = 76

Iteration: 1
 Score = 46.2 bits (108), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/48 (52%), Positives = 33/48 (68%), Gaps = 3/48 (6%)
Query: 64  TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI 108
           T+NGRDS+ +RLGVK +  QV + G I+VRQRGT+   GK  G+ R  
Sbjct: 1   TRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDF 48

>pdb|3R8T|W Chain W, Structures Of The Bacterial Ribosome In Classical And Hybrid States Of Trna Binding Length = 75

Iteration: 1
 Score = 45.1 bits (105), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/34 (64%), Positives = 26/34 (76%)
Query: 65 KNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          +NGRDS  +RLGVK FG +    G+IIVRQRGTK
Sbjct: 1  RNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK 34

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	112
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	2e-34
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	3e-24
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	7e-24
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	1e-21
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	1e-17

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1 Length = 198

 Score =  116 bits (292), Expect = 2e-34
 Identities = 78/103 (75%), Positives = 87/103 (84%), Gaps = 7/103 (6%)

Query: 1   MATA-SMSASLIGSFKGLSLSSSSSSSFLKGDFTVCPK-SVTVSLP---PTSPLPLTIES 55
           MA A SMS +LIG+FKGLSLSS+SS  FL+GD +  PK S TV+LP     +P+PLTIES
Sbjct: 1   MAMATSMSLNLIGAFKGLSLSSTSS--FLRGDLSFSPKTSFTVTLPLENLQAPIPLTIES 58

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
           AHKKGAGSTKNGRDS GQRLGVKI+GDQVAKPGAIIVRQRGTK
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTK 101

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ... Length = 91

 Score = 87.4 bits (217), Expect = 3e-24
 Identities = 30/43 (69%), Positives = 34/43 (79%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GS+KNGRDS  + LGVK FG +V K G I+VRQRGTK
Sbjct: 2  AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTK 44

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ... Length = 85

 Score = 86.2 bits (214), Expect = 7e-24
 Identities = 28/43 (65%), Positives = 35/43 (81%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GST+NGRDS+ +RLGVK +  QV + G I+VRQRGT+
Sbjct: 2  AHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTR 44

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O Length = 69

 Score = 80.0 bits (198), Expect = 1e-21
 Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)

Query: 56 AHKKGAGSTKN-GRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          A KK  GS+KN G  S G+R G+K         G II  QR  +
Sbjct: 1  ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFR 44

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W 2qoz_W* ... Length = 76

 Score = 70.0 bits (172), Expect = 1e-17
 Identities = 23/35 (65%), Positives = 27/35 (77%)

Query: 64 TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          T+NGRDS  +RLGVK FG +    G+IIVRQRGTK
Sbjct: 1  TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTK 35

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	112
3bbo_X	198	Ribosomal protein L27; large ribosomal subunit, sp	100.0
3v2d_0	85	50S ribosomal protein L27; ribosome associated inh	100.0
2zjr_T	91	50S ribosomal protein L27; ribosome, large ribosom	100.0
2ftc_O	69	L27MT, MRP-L27, mitochondrial 39S ribosomal protei	100.0
3r8s_W	76	50S ribosomal protein L27; protein biosynthesis, R	99.96
3bbo_W	191	Ribosomal protein L24; large ribosomal subunit, sp	82.91

>3bbo_X Ribosomal protein L27; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1

Probab=100.00  E-value=4.2e-50  Score=312.83  Aligned_cols=110  Identities=75%  Similarity=1.091  Sum_probs=56.5

Q ss_pred             Cccc-cccceeeeeeeeeeeccCcccceecCCccccc-CcceecCCCC---CCcceeEEeeeccCCcccCCCCCCCCccc
Q 033772            1 MATA-SMSASLIGSFKGLSLSSSSSSSFLKGDFTVCP-KSVTVSLPPT---SPLPLTIESAHKKGAGSTKNGRDSRGQRL   75 (112)
Q Consensus         1 ~~~~-~~~~~l~~~f~glsl~s~~sssf~~g~~~~~~-~~~~~~~p~~---~~~~~~ir~A~KK~gGStkNgrdS~~KrL   75 (112)
                      |||| +|+|||+++||||||+|  ||||++||.++.. .+..++.|+.   +++.++|||||||++|||+|||||++|||
T Consensus         1 ~~~~~~~~~~l~~~f~g~s~ss--sssf~~~~~~~~~~~~~~~~~p~~~~~~~~~l~VRmAhKKggGSTkNGRDS~~KRL   78 (198)
T 3bbo_X            1 MAMATSMSLNLIGAFKGLSLSS--TSSFLRGDLSFSPKTSFTVTLPLENLQAPIPLTIESAHKKGAGSTKNGRDSPGQRL   78 (198)
T ss_dssp             ------------------------------------------------------------CCCCSSCCCCCCCCCCCCCC
T ss_pred             ChHHHHHHHHHHHHhccccccc--ccceecccccccccccccccccccccccchhhheeeeeccCCCCCCCCCCCCCcee
Confidence            4544 49999999999999999  7889999998877 7777888854   67889999999999999999999999999


Q ss_pred             ceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           76 GVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        76 GvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||++|||+|+||+||||||||+   |+|||||||| |||+
T Consensus        79 GVK~~gGq~V~aGnIIVRQRGTkfhPG~NVG~GkDhTLFAl  119 (198)
T 3bbo_X           79 GVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFSL  119 (198)
T ss_dssp             SCSSSBCCSSCSCCSSSSCCCCSSCCCCSSSSCCCCCSBCC
T ss_pred             eEEecCCeEeccCcEEEeccCceEcCCCCeeecCCCceEec
Confidence            99999999999999999999999   9999999999 9996

>3v2d_0 50S ribosomal protein L27; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgj_Z 2hgq_Z 2hgu_Z 2j01_0 2j03_0 2jl6_0 2jl8_0 2wdi_0 2wdj_0 2wdl_0 2wdn_0 2wh2_0 2wh4_0 2wrj_0 2wrl_0 2wro_0 2wrr_0 2x9s_0 2x9u_0 2xg0_0 ...

Probab=100.00  E-value=3.7e-35  Score=204.52  Aligned_cols=58  Identities=57%  Similarity=0.925  Sum_probs=49.6

Q ss_pred             eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||++|||+|||||++||||||+++||+|.||+||||||||+   |+|||||||| ||||
T Consensus         1 MAhKK~gGStkNGrdS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl   62 (85)
T 3v2d_0            1 MAHKKGLGSTRNGRDSQAKRLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFAL   62 (85)
T ss_dssp             --------CCSCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSEEECTTEEECTTCCEEES
T ss_pred             CCcccCCCCCCCCCCCCCccceeEecCCeEEcCCeEEEecCCccCcCCCCEeEcCCCeEEEe
Confidence            89999999999999999999999999999999999999999999   9999999999 9996

>2zjr_T 50S ribosomal protein L27; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.84.4.1 PDB: 1nwx_U* 1nwy_U* 1sm1_U* 1xbp_U* 1y69_U 1yl3_3 2b66_0 2b9n_0 2b9p_0 2zjp_T* 2zjq_T 1nkw_U 3cf5_T* 3dll_T* 3pio_T* 3pip_T* 1pnu_U 1pny_U 1vor_X 1vou_X ...

Probab=100.00  E-value=7.1e-35  Score=205.03  Aligned_cols=58  Identities=59%  Similarity=0.893  Sum_probs=56.5

Q ss_pred             eeeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           55 SAHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        55 ~A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||++|||+|||||+|||||||+++||+|.||+||||||||+   |+|||||||| ||||
T Consensus         1 mAhKK~~GSt~NGRdS~~krLGvK~~gGq~V~aG~IivRQRGtk~hPG~NVg~GkD~TLfAl   62 (91)
T 2zjr_T            1 MAHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFAL   62 (91)
T ss_dssp             -CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEES
T ss_pred             CCcccCCCCCCCCCCCCCceeeEEecCCeEEcCCeEEEecCCCEEcCCCCEEEcCCCcEEec
Confidence            79999999999999999999999999999999999999999999   9999999999 9996

>2ftc_O L27MT, MRP-L27, mitochondrial 39S ribosomal protein L27; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_O

Probab=100.00  E-value=6e-34  Score=192.07  Aligned_cols=57  Identities=39%  Similarity=0.604  Sum_probs=56.3

Q ss_pred             eeccCCcccCC-CCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           56 AHKKGAGSTKN-GRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        56 A~KK~gGStkN-grdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      ||||++|||+| ||||+|||||||+++||+|.||+||||||||+   |+|||||||| |||+
T Consensus         1 A~KK~~GSt~N~grdS~~krlGvK~~~Gq~V~aG~IivrQRgtk~hPG~nVg~GkD~TLfAl   62 (69)
T 2ftc_O            1 ASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNKCLYAL   62 (69)
T ss_pred             CcccccCcccCCCCCCCCceeeEEecCCeEecCCeEEEecCCCeEcCCCCeeecCCCcEEEc
Confidence            89999999999 99999999999999999999999999999999   9999999999 9996

>3r8s_W 50S ribosomal protein L27; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3j19_W 2qam_W* 1p85_U 1p86_U 2awb_W 2gya_U 2gyc_U 2aw4_W 2i2v_W 2j28_W 2i2t_W* 2qao_W* 2qba_W* 2qbc_W* 2qbe_W 2qbg_W 2qbi_W* 2qbk_W* 2qov_W 2qox_W ...

Probab=99.96  E-value=1.2e-29  Score=173.62  Aligned_cols=49  Identities=53%  Similarity=0.798  Sum_probs=48.2

Q ss_pred             cCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           64 TKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        64 tkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |+|||||++||||||+++||+|+||+||||||||+   |+|||||||| |||+
T Consensus         1 t~NGRDS~~krLGvK~~~Gq~V~aG~IivRQRGtk~hPG~NVG~GkD~TLfAl   53 (76)
T 3r8s_W            1 TRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAK   53 (76)
T ss_dssp             CCCCCCCCCCCCEESSCTTCEECTTCEEEECSSCSSEECTTEEECTTSCEEES
T ss_pred             CCCCCCCCcccceEEecCCeEEecCcEEEeccCccCcCCCCeeecCCCeEEEc
Confidence            68999999999999999999999999999999999   9999999999 9997

>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}

Probab=82.91  E-value=0.24  Score=38.31  Aligned_cols=25  Identities=52%  Similarity=0.623  Sum_probs=0.0

Q ss_pred             cccccceeeeeeeeeeeccCcccceecCCc
Q 033772            3 TASMSASLIGSFKGLSLSSSSSSSFLKGDF   32 (112)
Q Consensus         3 ~~~~~~~l~~~f~glsl~s~~sssf~~g~~   32 (112)
                      ||+|  .|-++|.+|||+|   ++|+..-.
T Consensus         1 ~~~~--~~~~~~~~~~~~~---~~~~~~~~   25 (191)
T 3bbo_W            1 MAAM--VLQSSFTSLSLSS---NSFLGQRL   25 (191)
T ss_dssp             ------------------------------
T ss_pred             Ccch--hhhhhhhcccccc---ccccCccc
Confidence            4567  7889999999977   66876655

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	112
d2gycu1	84	b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherich	4e-20
d2zjrt1	84	b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococc	1e-19
d1v8qa_	66	b.84.4.1 (A:) Ribosomal protein L27 {Thermus therm	3e-09

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

 Score = 75.5 bits (186), Expect = 4e-20
 Identities = 32/54 (59%), Positives = 36/54 (66%), Gaps = 3/54 (5%)

Query: 56  AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           AHKK  GST+NGRDS  +RLGVK FG +    G+IIVRQRGTK   G   G  R
Sbjct: 1   AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGR 54

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]} Length = 84

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

 Score = 74.4 bits (183), Expect = 1e-19
 Identities = 30/43 (69%), Positives = 34/43 (79%)

Query: 56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK 98
          AHKKG GS+KNGRDS  + LGVK FG +V K G I+VRQRGTK
Sbjct: 1  AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTK 43

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]} Length = 66

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

 Score = 47.0 bits (112), Expect = 3e-09
 Identities = 19/36 (52%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 74  RLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLAR 106
           RLGVK +  QV + G I+VRQRGT+   GK  G+ R
Sbjct: 1   RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGR 36

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	112
d2gycu1	84	Ribosomal protein L27 {Escherichia coli [TaxId: 56	99.98
d2zjrt1	84	Ribosomal protein L27 {Deinococcus radiodurans [Ta	99.97
d1v8qa_	66	Ribosomal protein L27 {Thermus thermophilus [TaxId	99.86

>d2gycu1 b.84.4.1 (U:1-84) Ribosomal protein L27 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Escherichia coli [TaxId: 562]

Probab=99.98  E-value=2.3e-34  Score=198.05  Aligned_cols=57  Identities=56%  Similarity=0.830  Sum_probs=56.3

Q ss_pred             eeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        56 A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      ||||++|||+|||||+|||||||+++||+|.||+||||||||+   |+|||||||| |||+
T Consensus         1 A~KK~~GSs~NgrdS~~krLGvK~~~Gq~V~~G~IivRQRGtk~hPG~nVg~GkD~TLfAl   61 (84)
T d2gycu1           1 AHKKAGGSTRNGRDSEAKRLGVKRFGGESVLAGSIIVRQRGTKFHAGANVGCGRDHTLFAK   61 (84)
T ss_dssp             CCCCSCCSCCCCCCCCCBCCCCSSSCCCSSCCSBSSCCCCCCSSCCCCCSSSCCCCCCCCC
T ss_pred             CCccccccCCCCCCCCCccceeEEcCCEEEcCCcEEEEeccceEcCCCCeeecCCCeEEEe
Confidence            8999999999999999999999999999999999999999999   9999999999 9996

>d2zjrt1 b.84.4.1 (T:2-85) Ribosomal protein L27 {Deinococcus radiodurans [TaxId: 1299]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Deinococcus radiodurans [TaxId: 1299]

Probab=99.97  E-value=2.6e-33  Score=192.97  Aligned_cols=57  Identities=60%  Similarity=0.916  Sum_probs=56.3

Q ss_pred             eeccCCcccCCCCCCCCcccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           56 AHKKGAGSTKNGRDSRGQRLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        56 A~KK~gGStkNgrdS~~KrLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      ||||++|||+|||||+|||||||+++||+|.||+||||||||+   |+|||||||| |||+
T Consensus         1 A~KK~~GSt~NgrdS~~krlGvK~~~Gq~V~~G~IivRQRGtk~hpG~nVg~GkD~TLfA~   61 (84)
T d2zjrt1           1 AHKKGVGSSKNGRDSNPKYLGVKKFGGEVVKAGNILVRQRGTKFKAGQGVGMGRDHTLFAL   61 (84)
T ss_dssp             CCSSCSSCSSCCCCCCCCCCCCSSCTTCEECSSCEEECCSSSSSEECTTEECCTTSCEEES
T ss_pred             CCccccCCCCCCCCCCCccceEEECCCEEEeCCcEEEEecCceEcCCCCccccCCCcEEEe
Confidence            8999999999999999999999999999999999999999999   9999999999 9996

>d1v8qa_ b.84.4.1 (A:) Ribosomal protein L27 {Thermus thermophilus [TaxId: 274]}

class: All beta proteins
fold: Barrel-sandwich hybrid
superfamily: Ribosomal L27 protein-like
family: Ribosomal L27 protein
domain: Ribosomal protein L27
species: Thermus thermophilus [TaxId: 274]

Probab=99.86  E-value=6.4e-23  Score=135.37  Aligned_cols=39  Identities=51%  Similarity=0.877  Sum_probs=38.3

Q ss_pred             ccceEeeCCeEeecCcEEEeecCCC---CCceeecccc-eeeC
Q 033772           74 RLGVKIFGDQVAKPGAIIVRQRGTK---GKMWGLARTI-QYSL  112 (112)
Q Consensus        74 rLGvK~~~Gq~V~~G~IIvRQRGtk---G~nVg~GrD~-lfAl  112 (112)
                      |||||+++||+|.||+||+|||||+   |+|||||||| |||+
T Consensus         1 RLGvK~~~Gq~V~~G~IivRQRGtk~~pG~nVg~GkD~TLfAl   43 (66)
T d1v8qa_           1 RLGVKRYEGQVVRAGNILVRQRGTRFKPGKNVGMGRDFTLFAL   43 (66)
T ss_dssp             CCEECSCTTCEECTTCEEEECSSCSSEECTTEEECTTCCEEES
T ss_pred             CCccEEeCCEEEeCCeEEEEeccCeEeCCCCeeecCCCcEEEe
Confidence            7999999999999999999999999   9999999999 9996