Citrus Sinensis ID: 035762

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------27
Protein Sequence
MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ
Secondary Structure (PSIPRED)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHccHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHHcHHHHHHHHHHHHHHHHcccccEEEEEccccccccccccccHHHHHHHHHHHcHHHHHccccEEEEEEEccc
Secondary Structure Prediction (SSPRO)
cccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcHHHHcccHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHccccccEEEEEEccccccccccccHHHHHHHHHHHHHcHHHHcccccEEEEEEccc
Coil and Loop (DISEMBL)
mdvkkagsSLDSLISSFNTRIADLQELVIArnmypvstvADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTmsmldlnttktllpesskqqsnsvsfkpeepaalpkekkgrgspplwyitsdeldslssymRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHfflendvkgpslkldntGKAILTVLRHLgrisetrighHRVIILLKPQ
Flexible Loop (DISEMBL)
mdvkkagssLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIksrvreeteaipkakkliDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLpesskqqsnsvsfkpeepaalpkekkgrgspplWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHfflendvkgpslkldntgKAILTVLRhlgrisetrighhrviillkpq
Low Complexity Region (SEG)
MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ
Disordered region (IsUnstruct)
********************IADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK**************************************************************************************LWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILL***
Disordered Region (DISOPRED)
***********SLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSR***************DASLRQQKILQNMSSYAS****************************************************WYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPK*****NLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILLKP*
Disordered Region (DISEMBL)
**********DSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK*********IPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLL*****************************SPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ
Disordered Region (DISPRO)
*******SSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSL********************************************GSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILLK**
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	268	2.2.26 [Sep-21-2011]
Q9LZZ7	272	Spindle and kinetochore-a	yes	no	0.996	0.981	0.717	1e-108
Q7XAM0	276	Spindle and kinetochore-a	yes	no	0.985	0.956	0.549	3e-83
B8B624	276	Spindle and kinetochore-a	N/A	no	0.985	0.956	0.549	1e-82
B4FGS2	273	Spindle and kinetochore-a	N/A	no	0.981	0.963	0.535	4e-77
B0BN28	254	Spindle and kinetochore-a	yes	no	0.854	0.901	0.258	6e-14
Q9CPV1	254	Spindle and kinetochore-a	yes	no	0.843	0.889	0.257	8e-14
Q96BD8	255	Spindle and kinetochore-a	yes	no	0.861	0.905	0.254	2e-13
Q0V7M7	254	Spindle and kinetochore-a	yes	no	0.850	0.897	0.261	6e-13
Q6DHG8	258	Spindle and kinetochore-a	yes	no	0.432	0.449	0.360	5e-10
B0BM28	252	Spindle and kinetochore-a	yes	no	0.847	0.900	0.214	2e-06

>sp|Q9LZZ7|SKA1_ARATH Spindle and kinetochore-associated protein 1 homolog OS=Arabidopsis thaliana GN=At3g60660 PE=2 SV=1

 Score =  392 bits (1006), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 196/273 (71%), Positives = 228/273 (83%), Gaps = 6/273 (2%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
           M+  +AGSSLDSLI+SFN RI +LQELVIARNMYP ST+ DLSAID A+ ++ELQVQ+IK
Sbjct: 1   MEGNQAGSSLDSLIASFNKRIGELQELVIARNMYPASTIPDLSAIDTALSSMELQVQSIK 60

Query: 61  SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
            R+REETEAIPKAKKLI+ASL+QQ  LQ MS YA S      +ML+ +  + LL E++KQ
Sbjct: 61  DRLREETEAIPKAKKLIEASLKQQGKLQKMSIYAPSHFPDKATMLNSDLNRCLLQENAKQ 120

Query: 121 QS-----NSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
                  +S+ F  EE A LPKEKKGRGSPPLWYIT +EL+SLSSYMRGRLTLEKVNAA+
Sbjct: 121 YEQHSTLSSLKFD-EEAAVLPKEKKGRGSPPLWYITVEELNSLSSYMRGRLTLEKVNAAI 179

Query: 176 NDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLD 235
           NDMA+YAEANAHLI+A K+KLA NLWE+AL+LRDI T +AVKGKHFFLE D+KGPSLKLD
Sbjct: 180 NDMASYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHFFLETDMKGPSLKLD 239

Query: 236 NTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           NTGKAILTVLRHLGRISETRIG +RVIIL+KP 
Sbjct: 240 NTGKAILTVLRHLGRISETRIGQNRVIILMKPH 272

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XAM0|SKA1_ORYSJ Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. japonica GN=Os07g0484500 PE=2 SV=1

 Score =  308 bits (789), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 151/275 (54%), Positives = 203/275 (73%), Gaps = 11/275 (4%)

Query: 2   DVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKS 61
           D  + G SLD++ ++F +R+ +LQELV+ARNMYP + + DL+A+D ++ A+E Q+QA++ 
Sbjct: 5   DASRLGESLDAVSAAFQSRVMELQELVLARNMYPATAIPDLAAVDVSLTAMEAQLQAVRR 64

Query: 62  RVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDL-NTTKTLLPES--- 117
           R++EE EA PKAKKL+  SL+QQ+ LQ M +   + + + +    L + +  + PES   
Sbjct: 65  RLQEEREAFPKAKKLVQQSLKQQRRLQLMLANMPTGMREDVFATPLEHNSSMMFPESLNF 124

Query: 118 ----SKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNA 173
                + + + +  K EEP A PK  KGRG  P WYI+++ELDSLSSYMRGRLTLEKVN 
Sbjct: 125 SSAVPEVRDHDLKIK-EEPTAPPK--KGRGPAPRWYISTEELDSLSSYMRGRLTLEKVNI 181

Query: 174 AVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLK 233
           A+N++A+YA+ NAHL++ PKKKL+ + WE+ALELRDIA  E+VKG+HFFLE D+KGP LK
Sbjct: 182 AINEVASYADGNAHLVACPKKKLSEDTWEKALELRDIAARESVKGRHFFLETDIKGPGLK 241

Query: 234 LDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           LD TGKAILTVLRHLGR  ETRIGHHRV IL K Q
Sbjct: 242 LDTTGKAILTVLRHLGRFQETRIGHHRVFILSKQQ 276

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8B624|SKA1_ORYSI Spindle and kinetochore-associated protein 1 homolog OS=Oryza sativa subsp. indica GN=OsI_26011 PE=3 SV=1

 Score =  306 bits (784), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 151/275 (54%), Positives = 202/275 (73%), Gaps = 11/275 (4%)

Query: 2   DVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKS 61
           D  + G SLD++ ++F +R+ +LQELV+ARNMYP + + DL+A+D ++ A+E Q+QA++ 
Sbjct: 5   DASRLGESLDAVSAAFQSRVMELQELVLARNMYPATAIPDLAAVDVSLTAMEAQLQAVRR 64

Query: 62  RVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDL-NTTKTLLPES--- 117
           R++EE EA PKAKKL+  SL+QQ+ LQ M +   + + + +    L + +  + PES   
Sbjct: 65  RLQEEREAFPKAKKLVQQSLKQQRRLQLMLANMPTGMREDVFATPLEHNSSMMFPESLNF 124

Query: 118 ----SKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNA 173
                + + + +  K EEP A PK  KGRG  P WYI+++ELDSLSSYMRGRLTLEKVN 
Sbjct: 125 SSAVPEVRDHDLKIK-EEPTAPPK--KGRGPAPRWYISTEELDSLSSYMRGRLTLEKVNI 181

Query: 174 AVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLK 233
           A+N++A+YA+ NAHL++ PKKKL+ + WE+AL LRDIA  E+VKGKHFFLE D+KGP LK
Sbjct: 182 AINEVASYADGNAHLVACPKKKLSEDTWEKALVLRDIAARESVKGKHFFLETDIKGPGLK 241

Query: 234 LDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           LD TGKAILTVLRHLGR  ETRIGHHRV IL K Q
Sbjct: 242 LDTTGKAILTVLRHLGRFQETRIGHHRVFILSKQQ 276

Oryza sativa subsp. indica (taxid: 39946)

>sp|B4FGS2|SKA1_MAIZE Spindle and kinetochore-associated protein 1 homolog OS=Zea mays PE=2 SV=1

 Score =  288 bits (736), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 144/269 (53%), Positives = 197/269 (73%), Gaps = 6/269 (2%)

Query: 2   DVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKS 61
           D  +A   LD++ ++F +++ +LQ+LV+AR+M+P + + DL+ +DA V A+E QV+ I  
Sbjct: 5   DGSRATPPLDAVAAAFKSQVMELQDLVLARSMFPATALPDLANVDALVTAMESQVETISR 64

Query: 62  RVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQT-MSMLDLNTTKTLLPE--SS 118
           R++EE +AIPKAKKL+  SL++++ LQ+M +   S + +   +     ++  +LP   SS
Sbjct: 65  RLQEELDAIPKAKKLVQRSLKEEEKLQHMLANLPSGMRKNDFANQHEQSSSRMLPHFNSS 124

Query: 119 KQQSNSVSFK-PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVND 177
             ++N    K  +EP A P+  KGR   P WYI+++ELDSLSSYMRGRLTLEKVN A+N+
Sbjct: 125 FTEANECELKIKDEPVAAPR--KGRAPAPRWYISTEELDSLSSYMRGRLTLEKVNIAINE 182

Query: 178 MATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNT 237
           +A+YA+ANAHL++ PKKKL+ + WE+ALELRDIA   AVKG HFFLE D+KGP LKLDNT
Sbjct: 183 VASYADANAHLVTCPKKKLSEDTWEKALELRDIAASGAVKGNHFFLEADIKGPGLKLDNT 242

Query: 238 GKAILTVLRHLGRISETRIGHHRVIILLK 266
           GKAILTVLRHLGR  E RIGHHRV IL K
Sbjct: 243 GKAILTVLRHLGRFHEVRIGHHRVFILSK 271

Zea mays (taxid: 4577)

>sp|B0BN28|SKA1_RAT Spindle and kinetochore-associated protein 1 OS=Rattus norvegicus GN=Ska1 PE=2 SV=1

 Score = 78.2 bits (191), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 69/267 (25%), Positives = 132/267 (49%), Gaps = 38/267 (14%)

Query: 7   GSSLDSLISSFNTRIADLQELVIARNM-------YPVSTVAD-LSAIDAAVKAVELQVQA 58
            S L+ L S  N +I ++++++  R +         +S + D +  ++  +   EL++Q 
Sbjct: 2   ASDLEQLCSYVNEKIENIKKILSLRKLGQDPTLKTTLSKIGDEIITVNELLNQFELEIQY 61

Query: 59  IKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESS 118
                +E+T +    K+L  +   + K ++++  +  S L Q    + +  + T  P+  
Sbjct: 62  -----QEQTNS--SLKELCKSLEEEFKDVEHLKEHIPSHLPQ----VTVTQSSTHKPDLD 110

Query: 119 KQQSNSVSFKPEEPAALPKE--KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVN 176
            ++S     K EEP  LPK+  K+ R    + +IT+DE   + +YM+ RLT  ++N  + 
Sbjct: 111 PKES----VKAEEPV-LPKKPPKEQRVIKEMHFITTDEFSGVPAYMKSRLTYCQINDVIK 165

Query: 177 DMATYAEANAHLISAPKKKLAG---NLWERAL--ELRDIATVEAVKGKHFFLENDVKG-P 230
           ++     +   +I  PK  ++    NL++R +  E +D       KG+HF +E D+K   
Sbjct: 166 EINKAVVSKYKIIHQPKASMSSVKRNLYQRFINEETKD------TKGRHFIVEADIKEFT 219

Query: 231 SLKLDNTGKAILTVLRHLGRISETRIG 257
           +LK+D     I+ +LRH  R+SE R G
Sbjct: 220 TLKVDKKFHVIMNILRHCQRLSEVRGG 246

Component of the SKA1 complex, a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation. Required for timely anaphase onset during mitosis, when chromosomes undergo bipolar attachment on spindle microtubules leading to silencing of the spindle checkpoint. The SKA1 complex is a direct component of the kinetochore-microtubule interface and directly associates with microtubules as oligomeric assemblies. The complex facilitates the processive movement of microspheres along a microtubule in a depolymerization-coupled manner. In the complex, it mediates the interaction with microtubules.

Rattus norvegicus (taxid: 10116)

>sp|Q9CPV1|SKA1_MOUSE Spindle and kinetochore-associated protein 1 OS=Mus musculus GN=Ska1 PE=2 SV=2

 Score = 77.8 bits (190), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 135/268 (50%), Gaps = 42/268 (15%)

Query: 8   SSLDSLISSFNTRIADLQELVIARNM-------YPVSTVAD-LSAIDAAVKAVELQVQAI 59
           S L+ L S  N +I ++++++  RN+         +S + D + A++  +   EL++Q  
Sbjct: 3   SELEDLCSYVNEKIGNIKKILSIRNLGQDPALKTTLSKIGDEIIAVNELLNKFELEIQ-- 60

Query: 60  KSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLL--PES 117
               +E+T +    K+L ++   + + ++++  +    L Q      +  T++L+  PE 
Sbjct: 61  ---YQEQTNS--SLKELCESLREECEDVEHLKEHVPPHLPQ------VTATQSLVHKPEP 109

Query: 118 SKQQSNSVSFKPEEPAALPKE--KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
             ++S+    K EEP  LPK+  ++ R    + +IT DE   + +YM+ RLT  ++N  +
Sbjct: 110 DPKESD----KAEEPG-LPKKPPREQRVIKEMQFITMDEFSDVPAYMKSRLTYCQINDII 164

Query: 176 NDMATYAEANAHLISAPKKKLAG---NLWERAL--ELRDIATVEAVKGKHFFLENDVKG- 229
            ++     +   ++  PK  ++    NL++R +  E +D       KG HF +E D+K  
Sbjct: 165 KEINKAVVSKYKIMHQPKASMSSVKRNLYQRFINEETKD------TKGHHFIVEADIKEF 218

Query: 230 PSLKLDNTGKAILTVLRHLGRISETRIG 257
            +LK+D     I+ +LRH  R+SE R G
Sbjct: 219 TALKVDKRFYVIMHILRHCHRLSEVRGG 246

Component of the SKA1 complex, a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation. Required for timely anaphase onset during mitosis, when chromosomes undergo bipolar attachment on spindle microtubules leading to silencing of the spindle checkpoint. The SKA1 complex is a direct component of the kinetochore-microtubule interface and directly associates with microtubules as oligomeric assemblies. The complex facilitates the processive movement of microspheres along a microtubule in a depolymerization-coupled manner. In the complex, it mediates the interaction with microtubules.

Mus musculus (taxid: 10090)

>sp|Q96BD8|SKA1_HUMAN Spindle and kinetochore-associated protein 1 OS=Homo sapiens GN=SKA1 PE=1 SV=1

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 120/267 (44%), Gaps = 36/267 (13%)

Query: 6   AGSSLDSLISSFNTRIADLQELVIARNMYPVSTVA--------DLSAIDAAVKAVELQVQ 57
           A S L+ L S  N +I ++++ +  RN     T+         ++  I+  +  +EL++Q
Sbjct: 2   ASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQ 61

Query: 58  AIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPES 117
                 +E+T      K+L ++     K ++++     S L Q            L PE 
Sbjct: 62  Y-----QEQTNN--SLKELCESLEEDYKDIEHLKENVPSHLPQVTVTQSCVKGSDLDPEE 114

Query: 118 SKQQSNSVSFKPEEPAAL---PKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAA 174
                     K EEP  +   PKE++     P  +IT DE + + SYM+ RLT  ++N  
Sbjct: 115 P--------IKVEEPEPVKKPPKEQRSIKEMP--FITCDEFNGVPSYMKSRLTYNQINDV 164

Query: 175 VNDMATYAEANAHLISAPKKKLAG---NLWERALELRDIATVEAVKGKHFFLENDVKG-P 230
           + ++     +   ++  PKK +     NL+ R ++       +  KG++F +E D+K   
Sbjct: 165 IKEINKAVISKYKILHQPKKSMNSVTRNLYHRFID----EETKDTKGRYFIVEADIKEFT 220

Query: 231 SLKLDNTGKAILTVLRHLGRISETRIG 257
           +LK D     +L +LRH  R+SE R G
Sbjct: 221 TLKADKKFHVLLNILRHCRRLSEVRGG 247

Component of the SKA1 complex, a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation. Required for timely anaphase onset during mitosis, when chromosomes undergo bipolar attachment on spindle microtubules leading to silencing of the spindle checkpoint. The SKA1 complex is a direct component of the kinetochore-microtubule interface and directly associates with microtubules as oligomeric assemblies. The complex facilitates the processive movement of microspheres along a microtubule in a depolymerization-coupled manner. In the complex, it mediates the interaction with microtubules.

Homo sapiens (taxid: 9606)

>sp|Q0V7M7|SKA1_BOVIN Spindle and kinetochore-associated protein 1 OS=Bos taurus GN=SKA1 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 120/264 (45%), Gaps = 36/264 (13%)

Query: 7   GSSLDSLISSFNTRIADLQELVIARNMYPVSTVA--------DLSAIDAAVKAVELQVQA 58
            S L+ L +  N +I +++  +  RN     T+         ++  ++  +  +EL++Q 
Sbjct: 2   ASDLEQLCAHINEKIGNIKRTLSLRNCGQEPTLKTILNKIGDEIIVVNELLNKLELEIQ- 60

Query: 59  IKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESS 118
                +E+T +    K+L ++     K ++++       L Q     +      L PE  
Sbjct: 61  ----YQEQTNS--SLKELFESLEEDYKDVEHLKENIPPHLPQVTVTQNFVNGSDLDPEEP 114

Query: 119 KQQSNSVSFKPEEPAAL---PKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
                    K EEPA     PKE++     P  +ITSDE + + +YM+ RLT   +N  +
Sbjct: 115 --------VKVEEPAPTKKPPKEQRSIKEMP--FITSDEFNGIPAYMKSRLTYCHINDVI 164

Query: 176 NDMATYAEANAHLISAPKKKL---AGNLWERALELRDIATVEAVKGKHFFLENDVKG-PS 231
            ++     +   ++  PKK +   A NL+ R +   D  T E  KG +F +E D+K   +
Sbjct: 165 KEINKAVVSKYKILHQPKKSMSSVARNLYHRFI---DEETKET-KGHYFVVEADIKEFTT 220

Query: 232 LKLDNTGKAILTVLRHLGRISETR 255
           LK+D     IL +LRH  R+SE R
Sbjct: 221 LKVDKRFHGILNILRHCRRLSEVR 244

Component of the SKA1 complex, a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation. Required for timely anaphase onset during mitosis, when chromosomes undergo bipolar attachment on spindle microtubules leading to silencing of the spindle checkpoint. The SKA1 complex is a direct component of the kinetochore-microtubule interface and directly associates with microtubules as oligomeric assemblies. The complex facilitates the processive movement of microspheres along a microtubule in a depolymerization-coupled manner. In the complex, it mediates the interaction with microtubules.

Bos taurus (taxid: 9913)

>sp|Q6DHG8|SKA1_DANRE Spindle and kinetochore-associated protein 1 OS=Danio rerio GN=ska1 PE=2 SV=1

 Score = 65.1 bits (157), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 44/122 (36%), Positives = 65/122 (53%), Gaps = 6/122 (4%)

Query: 147 LWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALE 206
           + +IT  E DS+  YM+GR+T +++NAAV  + T   +   ++  P K L  N   R+L+
Sbjct: 140 MEFITVPEFDSIPPYMKGRVTYDQLNAAVQSINTAVTSKYKILHQPVKTL--NNVSRSLQ 197

Query: 207 LR--DIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAILTVLRHLGRISETRIGHHRVII 263
            R  D  T +  KG  F +E D+K    LK+D     +L +LRH  R+ E R G     I
Sbjct: 198 QRFKDQETKDT-KGHFFVVEQDIKEFAQLKVDKRFVGMLNMLRHCQRLKEVRGGGLTRFI 256

Query: 264 LL 265
           LL
Sbjct: 257 LL 258

Component of the SKA1 complex, a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation. Required for timely anaphase onset during mitosis, when chromosomes undergo bipolar attachment on spindle microtubules leading to silencing of the spindle checkpoint. The SKA1 complex is a direct component of the kinetochore-microtubule interface and directly associates with microtubules as oligomeric assemblies. The complex facilitates the processive movement of microspheres along a microtubule in a depolymerization-coupled manner. In the complex, it mediates the interaction with microtubules.

Danio rerio (taxid: 7955)

>sp|B0BM28|SKA1_XENTR Spindle and kinetochore-associated protein 1 OS=Xenopus tropicalis GN=ska1 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/256 (21%), Positives = 118/256 (46%), Gaps = 29/256 (11%)

Query: 10  LDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVRE-ETE 68
           LD L S  N++I+ +++ +  RN      +    ++++ +  +  ++ ++ + +   ETE
Sbjct: 6   LDELCSHVNSKISLIKKTLQLRN------IGQDPSLNSVLSKIAFEMHSLYNLLNNLETE 59

Query: 69  AIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFK 128
              + ++ I  SLR+ +         +S L + +           LP+ ++  S++    
Sbjct: 60  V--QRQETIANSLRELQATVERDFTEASHLKENIP--------PHLPKRTQSSSSAPDEA 109

Query: 129 PE--------EPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMAT 180
           PE        EPA  P ++K      +  IT  E  ++ +YM+ RLT E++N  + ++  
Sbjct: 110 PEMVVKVAAPEPAKKPSKEKPIKE--MELITVHEFGTVPAYMKNRLTYEQINNIIEELNK 167

Query: 181 YAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGK 239
                  ++  P K L+    ++    ++  T +  KG+ F ++ D+K    +K+D    
Sbjct: 168 AVVGKYKILHQPLKSLSNQARKQLSRYKEEETKDT-KGQFFIVDQDIKDFTQVKVDKRFH 226

Query: 240 AILTVLRHLGRISETR 255
            +L++LRH  R+ E R
Sbjct: 227 GMLSILRHCHRLREIR 242

Component of the SKA1 complex, a microtubule-binding subcomplex of the outer kinetochore that is essential for proper chromosome segregation. Required for timely anaphase onset during mitosis, when chromosomes undergo bipolar attachment on spindle microtubules leading to silencing of the spindle checkpoint. The SKA1 complex is a direct component of the kinetochore-microtubule interface and directly associates with microtubules as oligomeric assemblies. The complex facilitates the processive movement of microspheres along a microtubule in a depolymerization-coupled manner. In the complex, it mediates the interaction with microtubules.

Xenopus tropicalis (taxid: 8364)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
225453957	269	PREDICTED: spindle and kinetochore-assoc	1.0	0.996	0.743	1e-112
147820743	279	hypothetical protein VITISV_028571 [Viti	1.0	0.960	0.713	1e-109
356495149	270	PREDICTED: spindle and kinetochore-assoc	1.0	0.992	0.722	1e-107
15232393	272	spindle and kinetochore-associated prote	0.996	0.981	0.717	1e-106
297817382	272	hypothetical protein ARALYDRAFT_486539 [	0.996	0.981	0.714	1e-106
255541200	265	conserved hypothetical protein [Ricinus	0.985	0.996	0.708	1e-105
449443722	269	PREDICTED: spindle and kinetochore-assoc	0.981	0.977	0.676	1e-94
357122821	276	PREDICTED: spindle and kinetochore-assoc	0.951	0.923	0.587	4e-83
356506412	278	PREDICTED: LOW QUALITY PROTEIN: spindle	0.902	0.870	0.604	5e-82
115472103	276	Os07g0484500 [Oryza sativa Japonica Grou	0.985	0.956	0.549	2e-81

>gi|225453957|ref|XP_002274132.1| PREDICTED: spindle and kinetochore-associated protein 1 homolog [Vitis vinifera] gi|296089173|emb|CBI38876.3| unnamed protein product [Vitis vinifera]

 Score =  409 bits (1050), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 200/269 (74%), Positives = 232/269 (86%), Gaps = 1/269 (0%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
           MDVK+AG+SLDS+ISSFNTRI +LQELVI RNMYP S++ DL+A+DA++KA+ELQVQAIK
Sbjct: 1   MDVKEAGTSLDSIISSFNTRITELQELVIGRNMYPASSITDLTAVDASLKAMELQVQAIK 60

Query: 61  SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
            R+R+E EAIPKAKKLIDASLRQQK LQ+M SY  S+    ++  +L ++K+L+ E+SKQ
Sbjct: 61  DRLRDEIEAIPKAKKLIDASLRQQKKLQSMYSYVPSNFPDRVAPSNLESSKSLMSETSKQ 120

Query: 121 QSNSVSFK-PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMA 179
            +N  S K  EEPAA PKEKKGR  PPLW+IT DELDSLSSYMRGRLTLEKVNAA+NDMA
Sbjct: 121 CTNFGSEKHEEEPAAPPKEKKGRAPPPLWFITIDELDSLSSYMRGRLTLEKVNAAINDMA 180

Query: 180 TYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGK 239
           TYAEANA LI+APKKKLA N+WERALE+RDIA    VKGKHFFLE D+KGP+LKLDNTG+
Sbjct: 181 TYAEANAQLIAAPKKKLAENVWERALEIRDIAMTGGVKGKHFFLETDIKGPALKLDNTGR 240

Query: 240 AILTVLRHLGRISETRIGHHRVIILLKPQ 268
           AILTVLRHLGRISE RIGHHRVIIL KPQ
Sbjct: 241 AILTVLRHLGRISEIRIGHHRVIILSKPQ 269

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147820743|emb|CAN69643.1| hypothetical protein VITISV_028571 [Vitis vinifera]

 Score =  399 bits (1024), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 199/279 (71%), Positives = 232/279 (83%), Gaps = 11/279 (3%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARN----------MYPVSTVADLSAIDAAVK 50
           MDVK+AG+SLDS+ISSFNTRI +LQELVI RN          +YP S++ DL+A+DA++K
Sbjct: 1   MDVKEAGTSLDSIISSFNTRITELQELVIGRNNENRPFFRLAVYPASSITDLTAVDASLK 60

Query: 51  AVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTT 110
           A+ELQVQAIK R+R+E EAIPKAKKLIDASLRQQK LQ+M SY  S+    ++  +L ++
Sbjct: 61  AMELQVQAIKDRLRDEIEAIPKAKKLIDASLRQQKKLQSMYSYVPSNFPDRVAPSNLESS 120

Query: 111 KTLLPESSKQQSNSVSFK-PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLE 169
           K+L+ E+SKQ +N  S K  EEPAA PKEKKGR  PPLW+IT DELDSLSSYMRGRLTLE
Sbjct: 121 KSLMSETSKQCTNFGSEKHEEEPAAPPKEKKGRAPPPLWFITIDELDSLSSYMRGRLTLE 180

Query: 170 KVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKG 229
           KVNAA+NDMATYAEANA LI+APKKKLA N+WERALE+RDIA    VKGKHFFLE D+KG
Sbjct: 181 KVNAAINDMATYAEANAQLIAAPKKKLAENVWERALEIRDIAMTGGVKGKHFFLETDIKG 240

Query: 230 PSLKLDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           P+LKLDNTG+AILTVLRHLGRISE RIGHHRVIIL KPQ
Sbjct: 241 PALKLDNTGRAILTVLRHLGRISEIRIGHHRVIILSKPQ 279

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356495149|ref|XP_003516443.1| PREDICTED: spindle and kinetochore-associated protein 1 homolog [Glycine max]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 195/270 (72%), Positives = 223/270 (82%), Gaps = 2/270 (0%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
           M+  KAG+SLDSL+SSFN RI  LQELVIARNMYP S V DLSA+DAAV A+ELQV+AIK
Sbjct: 1   MNKNKAGASLDSLMSSFNARITQLQELVIARNMYPASGVEDLSAVDAAVSAMELQVKAIK 60

Query: 61  SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
            R+REE  AIPK KKLIDASLRQQK LQNMS +    ++  +++  L T++ L PE S Q
Sbjct: 61  DRLREEALAIPKTKKLIDASLRQQKKLQNMSLHVPYQMADKVTVSHLETSRCLFPEFSGQ 120

Query: 121 QSNSV-SFK-PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDM 178
            S S  + K  EEPAA+PKEKKGRG PP WY+T  ELDSLSSYMRGRLTLEKVNAA+NDM
Sbjct: 121 DSGSFEALKLEEEPAAVPKEKKGRGPPPTWYVTRSELDSLSSYMRGRLTLEKVNAAINDM 180

Query: 179 ATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTG 238
            +YAEANA LI APKKKLA NLWE+ALE+RDIAT+E +KGKHFFLE D+KGPSLKLDNTG
Sbjct: 181 VSYAEANAQLIVAPKKKLAENLWEKALEIRDIATMEGIKGKHFFLEADIKGPSLKLDNTG 240

Query: 239 KAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           KAILTVLRHLGRI+ETR+GH+RVIIL KP 
Sbjct: 241 KAILTVLRHLGRINETRVGHNRVIILQKPH 270

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15232393|ref|NP_191625.1| spindle and kinetochore-associated protein 1-like protein [Arabidopsis thaliana] gi|75181374|sp|Q9LZZ7.1|SKA1_ARATH RecName: Full=Spindle and kinetochore-associated protein 1 homolog gi|7329676|emb|CAB82670.1| putative protein [Arabidopsis thaliana] gi|26450283|dbj|BAC42258.1| unknown protein [Arabidopsis thaliana] gi|28827580|gb|AAO50634.1| unknown protein [Arabidopsis thaliana] gi|332646573|gb|AEE80094.1| spindle and kinetochore-associated protein 1-like protein [Arabidopsis thaliana]

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 196/273 (71%), Positives = 228/273 (83%), Gaps = 6/273 (2%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
           M+  +AGSSLDSLI+SFN RI +LQELVIARNMYP ST+ DLSAID A+ ++ELQVQ+IK
Sbjct: 1   MEGNQAGSSLDSLIASFNKRIGELQELVIARNMYPASTIPDLSAIDTALSSMELQVQSIK 60

Query: 61  SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
            R+REETEAIPKAKKLI+ASL+QQ  LQ MS YA S      +ML+ +  + LL E++KQ
Sbjct: 61  DRLREETEAIPKAKKLIEASLKQQGKLQKMSIYAPSHFPDKATMLNSDLNRCLLQENAKQ 120

Query: 121 QS-----NSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
                  +S+ F  EE A LPKEKKGRGSPPLWYIT +EL+SLSSYMRGRLTLEKVNAA+
Sbjct: 121 YEQHSTLSSLKFD-EEAAVLPKEKKGRGSPPLWYITVEELNSLSSYMRGRLTLEKVNAAI 179

Query: 176 NDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLD 235
           NDMA+YAEANAHLI+A K+KLA NLWE+AL+LRDI T +AVKGKHFFLE D+KGPSLKLD
Sbjct: 180 NDMASYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHFFLETDMKGPSLKLD 239

Query: 236 NTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           NTGKAILTVLRHLGRISETRIG +RVIIL+KP 
Sbjct: 240 NTGKAILTVLRHLGRISETRIGQNRVIILMKPH 272

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297817382|ref|XP_002876574.1| hypothetical protein ARALYDRAFT_486539 [Arabidopsis lyrata subsp. lyrata] gi|297322412|gb|EFH52833.1| hypothetical protein ARALYDRAFT_486539 [Arabidopsis lyrata subsp. lyrata]

 Score =  391 bits (1004), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 195/273 (71%), Positives = 230/273 (84%), Gaps = 6/273 (2%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
           M+  +AGSSLDSLI+SFN RI +LQELVIARNMYP ST+ DLSAID A+ ++ELQVQ+IK
Sbjct: 1   MEGNQAGSSLDSLIASFNKRICELQELVIARNMYPASTIPDLSAIDTALSSMELQVQSIK 60

Query: 61  SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
            R+REETEAIPKAKKLI++SL+QQ  LQ MS YA S +    +ML+ +  + LL E++KQ
Sbjct: 61  DRLREETEAIPKAKKLIESSLKQQGKLQKMSIYAPSHIPDKATMLNSDLNRCLLQENAKQ 120

Query: 121 QS-----NSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
                  +S+ F  EE A LPKEKKGRGSPPLWYIT++EL+SLSSYMRGRLTLEKVNAA+
Sbjct: 121 YEQHSIPSSLKFD-EEVAVLPKEKKGRGSPPLWYITAEELNSLSSYMRGRLTLEKVNAAI 179

Query: 176 NDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLD 235
           NDMA+YAEANAHLI+A K+KLA NLWE+AL+LRDI T +AVKGKHFFLE D+KGPSLKLD
Sbjct: 180 NDMASYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHFFLETDMKGPSLKLD 239

Query: 236 NTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           NTGKAILTVLRHLGRISETRIG +RVIIL+KP 
Sbjct: 240 NTGKAILTVLRHLGRISETRIGQNRVIILMKPH 272

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541200|ref|XP_002511664.1| conserved hypothetical protein [Ricinus communis] gi|223548844|gb|EEF50333.1| conserved hypothetical protein [Ricinus communis]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 190/268 (70%), Positives = 225/268 (83%), Gaps = 4/268 (1%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
           M +  AGSSLDSLISSFNTRI++LQELVI RNMYP S++ DLSA+D ++K +ELQ+QAIK
Sbjct: 1   MAMNDAGSSLDSLISSFNTRISELQELVIGRNMYPASSITDLSAVDTSLKTMELQIQAIK 60

Query: 61  SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
            R+REE EAIPKAKKLI+ SLRQQK LQ+MSS+    L   M  L+L+  K++ PE+  Q
Sbjct: 61  DRLREEFEAIPKAKKLIEMSLRQQKKLQSMSSHV---LPHRMISLNLDANKSVPPEAPNQ 117

Query: 121 QSNSVSFKPE-EPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMA 179
           Q+   S K E EPA LPKEKKGR  PPLWYIT+DEL+SL +YMRGRLTL+KVNAA+NDMA
Sbjct: 118 QNEFGSLKTENEPAPLPKEKKGRAPPPLWYITADELNSLPTYMRGRLTLDKVNAAINDMA 177

Query: 180 TYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGK 239
           TYAE+NAHLI A KKKLA NLWE+AL++RDIA  E VKGKHFFLE+D+KGP+LKLDNTGK
Sbjct: 178 TYAESNAHLIGASKKKLAENLWEKALQVRDIAMTETVKGKHFFLESDIKGPTLKLDNTGK 237

Query: 240 AILTVLRHLGRISETRIGHHRVIILLKP 267
           A+LTVLRHLGRISETRIG HR++ILLKP
Sbjct: 238 AMLTVLRHLGRISETRIGPHRILILLKP 265

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449443722|ref|XP_004139626.1| PREDICTED: spindle and kinetochore-associated protein 1 homolog [Cucumis sativus] gi|449475389|ref|XP_004154437.1| PREDICTED: spindle and kinetochore-associated protein 1 homolog [Cucumis sativus]

 Score =  352 bits (902), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 184/272 (67%), Positives = 219/272 (80%), Gaps = 9/272 (3%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
           M++K+AGS LD+LI +FN RIA+LQ+LVIARNMYP S + DLSA+DA++K +ELQVQAIK
Sbjct: 1   MELKEAGSLLDNLIVAFNGRIAELQDLVIARNMYPASCLPDLSAVDASLKVMELQVQAIK 60

Query: 61  SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSS---LSQTMSMLDLNTTKTLLPES 117
            ++REE EAIPKAKKLI+ASL+QQK L+++S +  +    L   +S L+LNT+   L   
Sbjct: 61  KQLREEAEAIPKAKKLIEASLKQQKRLESISLHVPTYYQILPDRVSALNLNTS---LCSE 117

Query: 118 SKQQSNSVSFKPEEP--AALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAV 175
           +K     +  +  E   + LPKEKK   SPPLWYIT DEL+SLSSYMRGRLT++KVNAAV
Sbjct: 118 AKASGTELGSREAENVISVLPKEKK-VSSPPLWYITIDELNSLSSYMRGRLTVDKVNAAV 176

Query: 176 NDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLD 235
            DMATYAEANA LI  PKKKLA NLWE+ALELRDIAT  AVKGK+FFLE D+KGPSLKLD
Sbjct: 177 YDMATYAEANAQLIGIPKKKLAENLWEKALELRDIATTNAVKGKYFFLETDMKGPSLKLD 236

Query: 236 NTGKAILTVLRHLGRISETRIGHHRVIILLKP 267
           NTGKAILTVLRHLGRISETRIGH RVI+LLKP
Sbjct: 237 NTGKAILTVLRHLGRISETRIGHQRVILLLKP 268

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357122821|ref|XP_003563113.1| PREDICTED: spindle and kinetochore-associated protein 1 homolog [Brachypodium distachyon]

 Score =  313 bits (803), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 155/264 (58%), Positives = 204/264 (77%), Gaps = 9/264 (3%)

Query: 10  LDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEA 69
           ++++  +F +R+ +LQ+LV+ARNMYP + V DL+A+D++VKA+E+QVQ I+ R++EE +A
Sbjct: 13  MEAVAGAFRSRVNELQDLVLARNMYPATAVTDLAAVDSSVKAMEVQVQDIRRRLQEELDA 72

Query: 70  IPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDL-NTTKTLLPESSKQQSN----- 123
           IPKAKKL++ SL+QQK LQ+M +   S + + +    L  ++  +LPE     S      
Sbjct: 73  IPKAKKLVEKSLKQQKKLQHMLANMPSGMHEDVFATSLEQSSSKMLPECFNFNSTVPELV 132

Query: 124 SVSFK-PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYA 182
              FK  +EP A PK  KG+GS P WYI+++ELDSLSSYM+GRLTLEKVN A+N++ATYA
Sbjct: 133 YSDFKIKDEPVAAPK--KGKGSAPRWYISTEELDSLSSYMKGRLTLEKVNIAINEVATYA 190

Query: 183 EANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDNTGKAIL 242
           +A+AHL++ PKKKL+ + WERALELRDIA  EAVKGKHFFLE D+KGP LKLD+TGKAIL
Sbjct: 191 DADAHLVACPKKKLSEDTWERALELRDIAGTEAVKGKHFFLEADIKGPGLKLDHTGKAIL 250

Query: 243 TVLRHLGRISETRIGHHRVIILLK 266
           TVLRHLGRI ETRIGHHRV IL K
Sbjct: 251 TVLRHLGRIHETRIGHHRVFILSK 274

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506412|ref|XP_003521977.1| PREDICTED: LOW QUALITY PROTEIN: spindle and kinetochore-associated protein 1 homolog [Glycine max]

 Score =  310 bits (793), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 165/273 (60%), Positives = 198/273 (72%), Gaps = 31/273 (11%)

Query: 1   MDVKKAGSSLDSLISSFNTRIADLQELVIARN---------------------MYPVSTV 39
           M+  KA +SLDSL+SSFN RI  LQELVIARN                     +YP S V
Sbjct: 1   MNKNKAXASLDSLMSSFNARITQLQELVIARNSWEFHHFNFYLSKRFFGYKFALYPASGV 60

Query: 40  ADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLS 99
           ADL+A+DAAV A+ELQV+AIK R+REE +AI K KKL+DASL+ QK LQNMS +    ++
Sbjct: 61  ADLTAVDAAVSAMELQVKAIKDRLREEAQAITKTKKLVDASLQXQKKLQNMSLHVPYQMA 120

Query: 100 QTMSMLDLNTTKTLLPESSKQQSNSVSFKP----EEPAALPKEKKGRGSPPLWYITSDEL 155
             +++  L T++ L PE S Q S S  F+     EEPAA+PKE+KGRGSPP W++T  EL
Sbjct: 121 DKVTLSHLETSRCLFPEFSGQDSGS--FEALRLDEEPAAVPKEEKGRGSPPTWHVTGTEL 178

Query: 156 DSLSS----YMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIA 211
           DSLSS    YMRGRLTLEKVNAA+NDM +YAEANA LI  PKKKLA NLWE+ALE+RDIA
Sbjct: 179 DSLSSXVTIYMRGRLTLEKVNAAINDMVSYAEANALLIVVPKKKLAENLWEKALEIRDIA 238

Query: 212 TVEAVKGKHFFLENDVKGPSLKLDNTGKAILTV 244
           ++E +KGKH FLE D+KGPSLKLDNTGKAIL V
Sbjct: 239 SMEGIKGKHSFLEADIKGPSLKLDNTGKAILIV 271

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115472103|ref|NP_001059650.1| Os07g0484500 [Oryza sativa Japonica Group] gi|75141023|sp|Q7XAM0.1|SKA1_ORYSJ RecName: Full=Spindle and kinetochore-associated protein 1 homolog gi|33354189|dbj|BAC81170.1| unknown protein [Oryza sativa Japonica Group] gi|50510260|dbj|BAD31464.1| unknown protein [Oryza sativa Japonica Group] gi|113611186|dbj|BAF21564.1| Os07g0484500 [Oryza sativa Japonica Group] gi|215693974|dbj|BAG89183.1| unnamed protein product [Oryza sativa Japonica Group] gi|222637042|gb|EEE67174.1| hypothetical protein OsJ_24262 [Oryza sativa Japonica Group]

 Score =  308 bits (789), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 151/275 (54%), Positives = 203/275 (73%), Gaps = 11/275 (4%)

Query: 2   DVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKS 61
           D  + G SLD++ ++F +R+ +LQELV+ARNMYP + + DL+A+D ++ A+E Q+QA++ 
Sbjct: 5   DASRLGESLDAVSAAFQSRVMELQELVLARNMYPATAIPDLAAVDVSLTAMEAQLQAVRR 64

Query: 62  RVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDL-NTTKTLLPES--- 117
           R++EE EA PKAKKL+  SL+QQ+ LQ M +   + + + +    L + +  + PES   
Sbjct: 65  RLQEEREAFPKAKKLVQQSLKQQRRLQLMLANMPTGMREDVFATPLEHNSSMMFPESLNF 124

Query: 118 ----SKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNA 173
                + + + +  K EEP A PK  KGRG  P WYI+++ELDSLSSYMRGRLTLEKVN 
Sbjct: 125 SSAVPEVRDHDLKIK-EEPTAPPK--KGRGPAPRWYISTEELDSLSSYMRGRLTLEKVNI 181

Query: 174 AVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLK 233
           A+N++A+YA+ NAHL++ PKKKL+ + WE+ALELRDIA  E+VKG+HFFLE D+KGP LK
Sbjct: 182 AINEVASYADGNAHLVACPKKKLSEDTWEKALELRDIAARESVKGRHFFLETDIKGPGLK 241

Query: 234 LDNTGKAILTVLRHLGRISETRIGHHRVIILLKPQ 268
           LD TGKAILTVLRHLGR  ETRIGHHRV IL K Q
Sbjct: 242 LDTTGKAILTVLRHLGRFQETRIGHHRVFILSKQQ 276

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	268
TAIR|locus:2101851	272	AT3G60660 "AT3G60660" [Arabido	0.996	0.981	0.726	5.9e-96
UNIPROTKB|E2RI68	255	SKA1 "Uncharacterized protein"	0.888	0.933	0.276	8.6e-17
RGD|1310784	254	Ska1 "spindle and kinetochore	0.876	0.925	0.274	8.6e-17
UNIPROTKB|Q96BD8	255	SKA1 "Spindle and kinetochore-	0.899	0.945	0.241	4.7e-16
UNIPROTKB|F1RPP2	255	SKA1 "Uncharacterized protein"	0.891	0.937	0.258	4.7e-16
MGI|MGI:1913718	254	Ska1 "spindle and kinetochore	0.873	0.921	0.257	7.7e-16
UNIPROTKB|G3X7D1	254	LOC100851833 "Uncharacterized	0.880	0.929	0.263	1.3e-15
UNIPROTKB|Q0V7M7	254	SKA1 "Spindle and kinetochore-	0.880	0.929	0.259	2.6e-15
ZFIN|ZDB-GENE-040718-334	258	ska1 "spindle and kinetochore	0.496	0.515	0.335	6.8e-10
UNIPROTKB|B0BM28	252	ska1 "Spindle and kinetochore-	0.869	0.924	0.224	2.7e-09

TAIR|locus:2101851 AT3G60660 "AT3G60660" [Arabidopsis thaliana (taxid:3702)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 197/271 (72%), Positives = 230/271 (84%)

Query:     1 MDVKKAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIK 60
             M+  +AGSSLDSLI+SFN RI +LQELVIARNMYP ST+ DLSAID A+ ++ELQVQ+IK
Sbjct:     1 MEGNQAGSSLDSLIASFNKRIGELQELVIARNMYPASTIPDLSAIDTALSSMELQVQSIK 60

Query:    61 SRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQ 120
              R+REETEAIPKAKKLI+ASL+QQ  LQ MS YA S      +ML+ +  + LL E++KQ
Sbjct:    61 DRLREETEAIPKAKKLIEASLKQQGKLQKMSIYAPSHFPDKATMLNSDLNRCLLQENAKQ 120

Query:   121 --QSNSVS-FK-PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVN 176
               Q +++S  K  EE A LPKEKKGRGSPPLWYIT +EL+SLSSYMRGRLTLEKVNAA+N
Sbjct:   121 YEQHSTLSSLKFDEEAAVLPKEKKGRGSPPLWYITVEELNSLSSYMRGRLTLEKVNAAIN 180

Query:   177 DMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKGPSLKLDN 236
             DMA+YAEANAHLI+A K+KLA NLWE+AL+LRDI T +AVKGKHFFLE D+KGPSLKLDN
Sbjct:   181 DMASYAEANAHLIAASKQKLAENLWEKALKLRDIVTEQAVKGKHFFLETDMKGPSLKLDN 240

Query:   237 TGKAILTVLRHLGRISETRIGHHRVIILLKP 267
             TGKAILTVLRHLGRISETRIG +RVIIL+KP
Sbjct:   241 TGKAILTVLRHLGRISETRIGQNRVIILMKP 271

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006261 "DNA-dependent DNA replication" evidence=RCA

UNIPROTKB|E2RI68 SKA1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 72/260 (27%), Positives = 123/260 (47%)

Query:     6 AGSSLDSLISSFNTRIADLQELVIARN--MYPV-STVADLSAIDAAVKAVELQVQAIKSR 62
             A S L+ L S  N +I +++ ++  RN    P+  T+ D    D  +   EL +  ++S 
Sbjct:     2 ASSDLEQLCSCINDKIGNIKRMLSLRNCGQEPILKTMLDKIG-DEIIVVNEL-LNKLESE 59

Query:    63 VREETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQS 122
             ++ + +     K+L ++     + ++++       L Q     +L     L PE      
Sbjct:    60 IQYQEQTNHSLKELCESLEEDYEDVEHLKENIPPHLPQITVSQNLANVSDLDPEEP---- 115

Query:   123 NSVSFKPEEPAALPKE-KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATY 181
                  K EEPA   K  K+ R    + +ITSDE + + +YM+ RLT  ++N  V ++   
Sbjct:   116 ----VKVEEPAPTKKPPKEQRSIKEMPFITSDEFNGIPAYMKSRLTYCQINDVVKEINKA 171

Query:   182 AEANAHLISAPKKKL---AGNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNT 237
               +   ++  PKK +   A NL+ R +   D  T +  KG++F +E D+K   +LK D  
Sbjct:   172 VVSKYKILHQPKKSMSSVARNLYHRFI---DEETKDT-KGQYFIVEADIKEFTALKADKR 227

Query:   238 GKAILTVLRHLGRISETRIG 257
                IL +LRH  R+SE R G
Sbjct:   228 FHVILNILRHCRRLSEIRGG 247

GO:0051301 "cell division" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000090 "mitotic anaphase" evidence=IEA

RGD|1310784 Ska1 "spindle and kinetochore associated complex subunit 1" [Rattus norvegicus (taxid:10116)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 71/259 (27%), Positives = 132/259 (50%)

Query:     8 SSLDSLISSFNTRIADLQELVIARNMYPVSTV-ADLSAI-DAAVKAVELQVQ-AIKSRVR 64
             S L+ L S  N +I ++++++  R +    T+   LS I D  +   EL  Q  ++ + +
Sbjct:     3 SDLEQLCSYVNEKIENIKKILSLRKLGQDPTLKTTLSKIGDEIITVNELLNQFELEIQYQ 62

Query:    65 EETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNS 124
             E+T +    K+L  +   + K ++++  +  S L Q +++   +T K   P+   ++S  
Sbjct:    63 EQTNS--SLKELCKSLEEEFKDVEHLKEHIPSHLPQ-VTVTQSSTHK---PDLDPKES-- 114

Query:   125 VSFKPEEPAALPKE--KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYA 182
                K EEP  LPK+  K+ R    + +IT+DE   + +YM+ RLT  ++N  + ++    
Sbjct:   115 --VKAEEPV-LPKKPPKEQRVIKEMHFITTDEFSGVPAYMKSRLTYCQINDVIKEINKAV 171

Query:   183 EANAHLISAPKKKLAG---NLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTG 238
              +   +I  PK  ++    NL++R +        +  KG+HF +E D+K   +LK+D   
Sbjct:   172 VSKYKIIHQPKASMSSVKRNLYQRFIN----EETKDTKGRHFIVEADIKEFTTLKVDKKF 227

Query:   239 KAILTVLRHLGRISETRIG 257
               I+ +LRH  R+SE R G
Sbjct:   228 HVIMNILRHCQRLSEVRGG 246

GO:0000090 "mitotic anaphase" evidence=ISO;ISS

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISO;ISS

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=IEA;ISO

GO:0005876 "spindle microtubule" evidence=ISO;ISS

GO:0007059 "chromosome segregation" evidence=ISO;ISS

GO:0007067 "mitosis" evidence=ISO;ISS

GO:0008017 "microtubule binding" evidence=ISO;ISS

GO:0015630 "microtubule cytoskeleton" evidence=ISO

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISO;ISS

GO:0051301 "cell division" evidence=ISO;ISS

UNIPROTKB|Q96BD8 SKA1 "Spindle and kinetochore-associated protein 1" [Homo sapiens (taxid:9606)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 62/257 (24%), Positives = 119/257 (46%)

Query:     6 AGSSLDSLISSFNTRIADLQELVIARNMYPVSTVAD-LSAIDAAVKAVELQVQAIKSRVR 64
             A S L+ L S  N +I ++++ +  RN     T+   L+ I   +  +   +  ++  ++
Sbjct:     2 ASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQ 61

Query:    65 EETEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNS 124
              + +     K+L ++     K ++++     S L Q      +  T++ +  S       
Sbjct:    62 YQEQTNNSLKELCESLEEDYKDIEHLKENVPSHLPQ------VTVTQSCVKGSDLDPEEP 115

Query:   125 VSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEA 184
             +  +  EP   P  K+ R    + +IT DE + + SYM+ RLT  ++N  + ++     +
Sbjct:   116 IKVEEPEPVKKPP-KEQRSIKEMPFITCDEFNGVPSYMKSRLTYNQINDVIKEINKAVIS 174

Query:   185 NAHLISAPKKKLAG---NLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGKA 240
                ++  PKK +     NL+ R +   D  T +  KG++F +E D+K   +LK D     
Sbjct:   175 KYKILHQPKKSMNSVTRNLYHRFI---DEETKDT-KGRYFIVEADIKEFTTLKADKKFHV 230

Query:   241 ILTVLRHLGRISETRIG 257
             +L +LRH  R+SE R G
Sbjct:   231 LLNILRHCRRLSEVRGG 247

GO:0000090 "mitotic anaphase" evidence=IMP

GO:0007067 "mitosis" evidence=IMP

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IDA

GO:0051301 "cell division" evidence=IMP

GO:0007059 "chromosome segregation" evidence=IMP

GO:0008017 "microtubule binding" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0000940 "condensed chromosome outer kinetochore" evidence=IDA

GO:0005876 "spindle microtubule" evidence=IDA

GO:0000087 "M phase of mitotic cell cycle" evidence=TAS

GO:0000236 "mitotic prometaphase" evidence=TAS

GO:0000278 "mitotic cell cycle" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005813 "centrosome" evidence=IDA

GO:0015630 "microtubule cytoskeleton" evidence=IDA

UNIPROTKB|F1RPP2 SKA1 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 200 (75.5 bits), Expect = 4.7e-16, P = 4.7e-16
 Identities = 66/255 (25%), Positives = 119/255 (46%)

Query:     8 SSLDSLISSFNTRIADLQELVIARNMYPVSTVAD-LSAIDAAVKAVELQVQAIKSRVREE 66
             S L+ L S  N +I ++++ +  RN     T+   L+ I   +  V   +  ++  +  +
Sbjct:     4 SDLEQLCSHINEKIGNIKKTLSLRNCGQEPTLKTILNKIGDEIIVVNELLNKLELEIEYQ 63

Query:    67 TEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVS 126
              +     ++L ++     K ++++       L Q     ++     L PE   +   S  
Sbjct:    64 EQTNSSLQELCESLEEDYKDVEHLKENIPPHLPQVTVTQNVVNGSDLDPEEPAKVEESAP 123

Query:   127 FKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANA 186
               P++P   PKE+  R    + +ITSDE + + +YM+ RLT  ++N  + ++        
Sbjct:   124 --PKKP---PKEQ--RNIKEMLFITSDEFNGIPAYMKSRLTYCQINDVIKEINKAVVGKY 176

Query:   187 HLISAPKKKL---AGNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAIL 242
              ++  PKK +   A NL+ R +   D  T E  KG +F +E D+K   +LK+D     IL
Sbjct:   177 KILHQPKKSMNSVARNLYHRFI---DEETKET-KGHYFIVEADIKEFTALKVDKRFHVIL 232

Query:   243 TVLRHLGRISETRIG 257
              +LRH  R+SE R G
Sbjct:   233 NILRHCRRLSEVRGG 247

GO:0051301 "cell division" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000090 "mitotic anaphase" evidence=IEA

MGI|MGI:1913718 Ska1 "spindle and kinetochore associated complex subunit 1" [Mus musculus (taxid:10090)]

 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 67/260 (25%), Positives = 130/260 (50%)

Query:     8 SSLDSLISSFNTRIADLQELVIARNM-YPVSTVADLSAIDAAVKAVELQVQAIKSRVREE 66
             S L+ L S  N +I ++++++  RN+    +    LS I   + AV   +   +  ++ +
Sbjct:     3 SELEDLCSYVNEKIGNIKKILSIRNLGQDPALKTTLSKIGDEIIAVNELLNKFELEIQYQ 62

Query:    67 TEAIPKAKKLIDASLRQQ-KILQNMSSYASSSLSQTMSMLDLNTTKTLL--PESSKQQSN 123
              +     K+L + SLR++ + ++++  +    L Q      +  T++L+  PE   ++S+
Sbjct:    63 EQTNSSLKELCE-SLREECEDVEHLKEHVPPHLPQ------VTATQSLVHKPEPDPKESD 115

Query:   124 SVSFKPEEPAALPKE--KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATY 181
                 K EEP  LPK+  ++ R    + +IT DE   + +YM+ RLT  ++N  + ++   
Sbjct:   116 ----KAEEPG-LPKKPPREQRVIKEMQFITMDEFSDVPAYMKSRLTYCQINDIIKEINKA 170

Query:   182 AEANAHLISAPKKKLAG---NLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNT 237
               +   ++  PK  ++    NL++R +        +  KG HF +E D+K   +LK+D  
Sbjct:   171 VVSKYKIMHQPKASMSSVKRNLYQRFIN----EETKDTKGHHFIVEADIKEFTALKVDKR 226

Query:   238 GKAILTVLRHLGRISETRIG 257
                I+ +LRH  R+SE R G
Sbjct:   227 FYVIMHILRHCHRLSEVRGG 246

GO:0000090 "mitotic anaphase" evidence=ISO

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISO

GO:0005694 "chromosome" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0005876 "spindle microtubule" evidence=ISO

GO:0007049 "cell cycle" evidence=IEA

GO:0007059 "chromosome segregation" evidence=ISO

GO:0007067 "mitosis" evidence=ISO

GO:0008017 "microtubule binding" evidence=ISO

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISO

GO:0051301 "cell division" evidence=ISO

UNIPROTKB|G3X7D1 LOC100851833 "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 67/254 (26%), Positives = 117/254 (46%)

Query:     8 SSLDSLISSFNTRIADLQELVIARNMYPVSTVAD-LSAIDAAVKAVELQVQAIKSRVREE 66
             S L+ L S  N +I +++  +  RN     T+   L+ I   +  V   +  ++  ++ +
Sbjct:     3 SDLEQLCSHINEKIGNIKRTLSLRNCGQEPTLKTILNKIGDEIIVVNELLNKLELEIQYQ 62

Query:    67 TEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVS 126
              +     K+L ++     K ++++       L Q      +  T+  +  S       V 
Sbjct:    63 EQTNSSLKELFESLEEDYKDVEHLKENIPPHLPQ------VTVTQNFVNGSDLDPEEPV- 115

Query:   127 FKPEEPAALPKE-KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEAN 185
              K EEPA   K  K+ R    + +ITSDE + + +YM+ RLT   +N  + ++     + 
Sbjct:   116 -KVEEPAPTKKPPKEQRSIKEMPFITSDEFNGIPAYMKSRLTYCHINDVIKEINKAVVSK 174

Query:   186 AHLISAPKKKL---AGNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAI 241
               ++  PKK +   A NL+ R +   D  T E  KG +F +E D+K   +LK+D     I
Sbjct:   175 YKILHQPKKSMSSVARNLYHRFI---DEETKET-KGHYFVVEADIKEFTTLKVDKRFHGI 230

Query:   242 LTVLRHLGRISETR 255
             L +LRH  R+SE R
Sbjct:   231 LNILRHCRRLSEVR 244

GO:0051301 "cell division" evidence=IEA

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=IEA

GO:0008017 "microtubule binding" evidence=IEA

GO:0007059 "chromosome segregation" evidence=IEA

GO:0005876 "spindle microtubule" evidence=IEA

GO:0005813 "centrosome" evidence=IEA

GO:0000940 "condensed chromosome outer kinetochore" evidence=IEA

GO:0000090 "mitotic anaphase" evidence=IEA

UNIPROTKB|Q0V7M7 SKA1 "Spindle and kinetochore-associated protein 1" [Bos taurus (taxid:9913)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 66/254 (25%), Positives = 117/254 (46%)

Query:     8 SSLDSLISSFNTRIADLQELVIARNMYPVSTVAD-LSAIDAAVKAVELQVQAIKSRVREE 66
             S L+ L +  N +I +++  +  RN     T+   L+ I   +  V   +  ++  ++ +
Sbjct:     3 SDLEQLCAHINEKIGNIKRTLSLRNCGQEPTLKTILNKIGDEIIVVNELLNKLELEIQYQ 62

Query:    67 TEAIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVS 126
              +     K+L ++     K ++++       L Q      +  T+  +  S       V 
Sbjct:    63 EQTNSSLKELFESLEEDYKDVEHLKENIPPHLPQ------VTVTQNFVNGSDLDPEEPV- 115

Query:   127 FKPEEPAALPKE-KKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEAN 185
              K EEPA   K  K+ R    + +ITSDE + + +YM+ RLT   +N  + ++     + 
Sbjct:   116 -KVEEPAPTKKPPKEQRSIKEMPFITSDEFNGIPAYMKSRLTYCHINDVIKEINKAVVSK 174

Query:   186 AHLISAPKKKL---AGNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAI 241
               ++  PKK +   A NL+ R +   D  T E  KG +F +E D+K   +LK+D     I
Sbjct:   175 YKILHQPKKSMSSVARNLYHRFI---DEETKET-KGHYFVVEADIKEFTTLKVDKRFHGI 230

Query:   242 LTVLRHLGRISETR 255
             L +LRH  R+SE R
Sbjct:   231 LNILRHCRRLSEVR 244

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0051301 "cell division" evidence=ISS

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0005737 "cytoplasm" evidence=IEA

ZFIN|ZDB-GENE-040718-334 ska1 "spindle and kinetochore associated complex subunit 1" [Danio rerio (taxid:7955)]

 Score = 159 (61.0 bits), Expect = 6.8e-10, P = 6.8e-10
 Identities = 47/140 (33%), Positives = 73/140 (52%)

Query:   129 PEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHL 188
             P+E    P++ +      + +IT  E DS+  YM+GR+T +++NAAV  + T   +   +
Sbjct:   123 PQEQGP-PRKTQRNQIKEMEFITVPEFDSIPPYMKGRVTYDQLNAAVQSINTAVTSKYKI 181

Query:   189 ISAPKKKLAGNLWERALELR--DIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAILTVL 245
             +  P K L  N+  R+L+ R  D  T +  KG  F +E D+K    LK+D     +L +L
Sbjct:   182 LHQPVKTL-NNV-SRSLQQRFKDQETKDT-KGHFFVVEQDIKEFAQLKVDKRFVGMLNML 238

Query:   246 RHLGRISETRIGHHRVIILL 265
             RH  R+ E R G     ILL
Sbjct:   239 RHCQRLKEVRGGGLTRFILL 258

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0051301 "cell division" evidence=IEA;ISS

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0005856 "cytoskeleton" evidence=IEA

GO:0000776 "kinetochore" evidence=IEA

GO:0005694 "chromosome" evidence=IEA

GO:0005874 "microtubule" evidence=IEA

GO:0007049 "cell cycle" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0000775 "chromosome, centromeric region" evidence=IEA

GO:0007067 "mitosis" evidence=IEA

UNIPROTKB|B0BM28 ska1 "Spindle and kinetochore-associated protein 1" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 154 (59.3 bits), Expect = 2.7e-09, P = 2.7e-09
 Identities = 56/250 (22%), Positives = 119/250 (47%)

Query:    10 LDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVRE-ETE 68
             LD L S  N++I+ +++ +  RN      +    ++++ +  +  ++ ++ + +   ETE
Sbjct:     6 LDELCSHVNSKISLIKKTLQLRN------IGQDPSLNSVLSKIAFEMHSLYNLLNNLETE 59

Query:    69 AIPKAKKLIDASLRQQKILQNMSSYASSSLSQTMSM-LDLNT-TKTLLPESSKQQSNSVS 126
                + ++ I  SLR+ +         +S L + +   L   T + +  P+ + +    V+
Sbjct:    60 V--QRQETIANSLRELQATVERDFTEASHLKENIPPHLPKRTQSSSSAPDEAPEMVVKVA 117

Query:   127 FKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANA 186
               PE PA  P ++K      L  IT  E  ++ +YM+ RLT E++N  + ++        
Sbjct:   118 -APE-PAKKPSKEKPIKEMEL--ITVHEFGTVPAYMKNRLTYEQINNIIEELNKAVVGKY 173

Query:   187 HLISAPKKKLAGNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAILTVL 245
              ++  P K L+    ++    ++  T +  KG+ F ++ D+K    +K+D     +L++L
Sbjct:   174 KILHQPLKSLSNQARKQLSRYKEEETKDT-KGQFFIVDQDIKDFTQVKVDKRFHGMLSIL 232

Query:   246 RHLGRISETR 255
             RH  R+ E R
Sbjct:   233 RHCHRLREIR 242

GO:0000090 "mitotic anaphase" evidence=ISS

GO:0000940 "condensed chromosome outer kinetochore" evidence=ISS

GO:0005876 "spindle microtubule" evidence=ISS

GO:0007059 "chromosome segregation" evidence=ISS

GO:0007067 "mitosis" evidence=ISS

GO:0008017 "microtubule binding" evidence=ISS

GO:0031110 "regulation of microtubule polymerization or depolymerization" evidence=ISS

GO:0051301 "cell division" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
B4FGS2	SKA1_MAIZE	No assigned EC number	0.5353	0.9813	0.9633	N/A	no
B8B624	SKA1_ORYSI	No assigned EC number	0.5490	0.9850	0.9565	N/A	no
Q9LZZ7	SKA1_ARATH	No assigned EC number	0.7179	0.9962	0.9816	yes	no
Q7XAM0	SKA1_ORYSJ	No assigned EC number	0.5490	0.9850	0.9565	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	268
pfam07160	243	pfam07160, DUF1395, Protein of unknown function (D	7e-86

>gnl|CDD|219314 pfam07160, DUF1395, Protein of unknown function (DUF1395)

 Score =  255 bits (654), Expect = 7e-86
 Identities = 97/244 (39%), Positives = 140/244 (57%), Gaps = 4/244 (1%)

Query: 20  RIADLQELVIARNMYPVSTVAD-LSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLID 78
           +I +++EL+ ARNMYP   +   LS I   + A+   +Q  + R++E+ E  PK KKL +
Sbjct: 1   KIGEIKELLSARNMYPDPAIPTTLSKIGDELSAINELLQDFELRLQEQRETNPKLKKLCE 60

Query: 79  ASLRQQKILQNMSSYASSSL-SQTMSMLDLNTTKTLLPESSKQQSNSVSFKPEEPAALPK 137
            SL QQ  LQ++   A   +  +  ++     ++ L+ E+      S   K E+      
Sbjct: 61  CSLEQQNDLQHLKENAPPHMPEKVQAVPQSTASQCLVQENEPDPKASDKPK-EQGLPKKP 119

Query: 138 EKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLA 197
            +KGRG   + +IT +E DS+ SYM+GRLTLE+VNAA+N+M +   +   ++  PKKKL+
Sbjct: 120 PRKGRGIKEMQFITVEEFDSIPSYMKGRLTLEQVNAAINEMNSAVTSKYKILHQPKKKLS 179

Query: 198 GNLWERALELRDIATVEAVKGKHFFLENDVKG-PSLKLDNTGKAILTVLRHLGRISETRI 256
               E A   RDI T +  KG HFF+E D+K  P LKLD   KAILTVLRH GR+SE R 
Sbjct: 180 EVDRELAQRFRDIETKDTKKGHHFFVETDIKEFPQLKLDKRFKAILTVLRHCGRLSEVRG 239

Query: 257 GHHR 260
           G   
Sbjct: 240 GGLT 243

This family consists of several hypothetical eukaryotic proteins of around 250 residues in length. The function of this family is unknown. Length = 243

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	268
PF07160	243	DUF1395: Protein of unknown function (DUF1395); In	100.0
KOG4832	253	consensus Uncharacterized conserved protein [Funct	100.0
PF11362	90	DUF3161: Protein of unknown function (DUF3161); In	91.31

>PF07160 DUF1395: Protein of unknown function (DUF1395); InterPro: IPR009829 This family consists of several hypothetical eukaryotic proteins of around 250 residues in length

Probab=100.00  E-value=6e-71  Score=500.31  Aligned_cols=238  Identities=39%  Similarity=0.634  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhhcCCCCCccc-hHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHhhhcCCCCC
Q 035762           20 RIADLQELVIARNMYPVSTVAD-LSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDASLRQQKILQNMSSYASSSL   98 (268)
Q Consensus        20 rI~~lk~l~~lR~~~p~~~~~~-l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~~~~q~~~lqhm~~nvP~~l   98 (268)
                      ||++||++|++|+++++....+ |.+|+..+.++|.+++.++.+|++|.++++++|+|+++++.|+++++||++|+|+||
T Consensus         1 ki~~~~~~~~~r~~~~~~~~~~~L~~i~~~~~~i~~~l~~~~~~l~~~~~~~~~lk~l~~~~~~~~~~l~hl~~nvP~~l   80 (243)
T PF07160_consen    1 KISELKELLSLRNMGQDPNLKDTLSKIDQEVSAIEELLNDIEQELQREEEALPKLKELMESSEEQQKKLQHLKENVPPHL   80 (243)
T ss_dssp             HHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------
T ss_pred             ChHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            7999999999999966666555 999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccccccccc-ccccCCCCcccCCCCccC-CCCCCCCCcccCCCCCCCCccccChHHhhhhhHHhhhhcCHHHHHHHHH
Q 035762           99 SQTMSMLDLNT-TKTLLPESSKQQSNSVSF-KPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVN  176 (268)
Q Consensus        99 P~~~~~~~~~~-~s~~~~e~~~~~~~~~~~-~p~~~~~~~ke~k~r~i~~~~~IT~eEF~siP~YmrGRLTleqvN~~i~  176 (268)
                      |...+.++.++ +++..+++..+.++..++ +++.+.+++|  +++++|+|||||++||+|||+|||||||||+||++|+
T Consensus        81 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k--k~~~i~~~~~IT~eEF~sIPkYMrGRLTleqlN~~i~  158 (243)
T PF07160_consen   81 PKKVQAVPQSSGSSSLVQENENDTPAPLKAEEQEAPKKPPK--KGRGIPPMWFITVEEFDSIPKYMRGRLTLEQLNAAID  158 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccchhcccccccccccccccccCccccCCcccCCCCCCCCc--cCCCCCccccccHHHHhcchHHHHhhccHHHHHHHHH
Confidence            98865442222 233223222222233333 2233444444  5589999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhhhhccchhhhcHHHHHHHHHHHhHhhhhccC-CeeeEecCccC-CCCccccchhhhHHHHHHhhchhhhh
Q 035762          177 DMATYAEANAHLISAPKKKLAGNLWERALELRDIATVEAVK-GKHFFLENDVK-GPSLKLDNTGKAILTVLRHLGRISET  254 (268)
Q Consensus       177 ein~~~~~Ky~il~~pkk~l~~~~~~r~~el~~~~~~k~~k-g~~F~~e~Dik-~~~lKlDkt~k~il~iLRHl~Rl~E~  254 (268)
                      +||+++++||+||++|+++|++..|.++..|+++ ++++++ |+|||||+||| ++++|+|+||++||+||||||||||+
T Consensus       159 ein~~~~~Ky~iL~~pkk~l~~~~r~~~~~~~~~-e~k~t~~G~~F~~E~Dik~~~~~KlDkt~~~iL~iLRH~~RL~E~  237 (243)
T PF07160_consen  159 EINKAVEAKYKILAKPKKKLSNKQRNLYQRFKEQ-ETKDTKKGQYFFVEDDIKEFTQLKLDKTFKAILTILRHLGRLREV  237 (243)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHHHHhhHHHcCHHHHHHHHHHHHH-HhcccCCCceeeeHHHhhhccccccchhHHHHHHHHHHhhhHHhh
Confidence            9999999999999999999999999999999985 678888 99999999999 79999999999999999999999999


Q ss_pred             ccCCeE
Q 035762          255 RIGHHR  260 (268)
Q Consensus       255 R~g~~~  260 (268)
                      ||||+|
T Consensus       238 R~g~~t  243 (243)
T PF07160_consen  238 RGGGLT  243 (243)
T ss_dssp             ------
T ss_pred             cCCCCC
Confidence            999986

The function of this family is unknown.; PDB: 4AJ5_G.

>KOG4832 consensus Uncharacterized conserved protein [Function unknown]

Probab=100.00  E-value=1.8e-61  Score=433.06  Aligned_cols=250  Identities=33%  Similarity=0.455  Sum_probs=218.4

Q ss_pred             CCCCCHHHHHHHHHHHHHHHHHHHHHhhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHHHH-HHHH
Q 035762            5 KAGSSLDSLISSFNTRIADLQELVIARNMYPVSTVADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLIDA-SLRQ   83 (268)
Q Consensus         5 ~~~~~Le~l~s~~n~rI~~lk~l~~lR~~~p~~~~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~~~-~~~q   83 (268)
                      .|+||||+||+|||++|.+|++++++|+|+++..+.+|.++...+..+|.++|.+++.||.+.+++| ..+||.. ...+
T Consensus         1 ~a~SsLeSLIss~ne~igEl~kl~s~rnm~~e~TI~~L~aI~~~~~sieLllq~ikd~lrqqkeann-~geLc~~~y~~~   79 (253)
T KOG4832|consen    1 MASSSLESLISSVNEKIGELKKLLSLRNMGQEPTIKVLNAIGDEIISIELLLQKIKDELRQQKEANN-LGELCESFYEED   79 (253)
T ss_pred             CCcccHHHHHHHHHHHHHHHHHHHHHhcCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHhcch
Confidence            4789999999999999999999999999999999999999999999999999999999999999999 8999998 7778


Q ss_pred             HHHHHHhhhcCCCCCcccccccccccccccCCCCcccCCCCccCCCCCCCCCcccCCCCCCCCccccChHHhhhhhHHhh
Q 035762           84 QKILQNMSSYASSSLSQTMSMLDLNTTKTLLPESSKQQSNSVSFKPEEPAALPKEKKGRGSPPLWYITSDELDSLSSYMR  163 (268)
Q Consensus        84 ~~~lqhm~~nvP~~lP~~~~~~~~~~~s~~~~e~~~~~~~~~~~~p~~~~~~~ke~k~r~i~~~~~IT~eEF~siP~Ymr  163 (268)
                      +.+..|.++|+|.++|...+.+++..+++.      ..-..+++. ++.+.-+|++++|+|+|||+||++||+++|+||+
T Consensus        80 lfD~e~tk~e~~t~~~~~s~~a~qyk~ss~------~~l~elk~d-ee~~vl~kpKenrgI~p~p~ITveefnt~psyq~  152 (253)
T KOG4832|consen   80 LFDIEHTKEEVPTHLPQVSVTASQYKGSSL------DPLEELKVD-EEEPVLKKPKENRGIKPMPFITVEEFNTVPSYQK  152 (253)
T ss_pred             hcchHHHHhccchhhhHhhhhhHHHhcccc------cccccccCC-CcccccCCccccCCCCCCceeeeccCCCccHHHh
Confidence            889999999999999998766655433442      222344554 4445556666779999999999999999999999


Q ss_pred             hhcCHHHHHHHHHHHHHHHHHhhhhhccchhhhcHHHHHHHHHHHhHh-hhhccCCeeeEecCccC-CCCccccchhhhH
Q 035762          164 GRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRDIA-TVEAVKGKHFFLENDVK-GPSLKLDNTGKAI  241 (268)
Q Consensus       164 GRLTleqvN~~i~ein~~~~~Ky~il~~pkk~l~~~~~~r~~el~~~~-~~k~~kg~~F~~e~Dik-~~~lKlDkt~k~i  241 (268)
                      |||||++||++|.+||.++-+||.++++|+.+|  +.|.+....|++. +++++||+|||+|.||| ++.+|+|++|+++
T Consensus       153 gRLTlE~vN~~i~~m~l~~~sk~~~~~~~kls~--n~~e~~l~~R~i~~e~~~~kg~~Ff~EtDik~~~~lkld~~f~~~  230 (253)
T KOG4832|consen  153 GRLTLEQVNDVIKEMNLAVISKYKILHQPKLSM--NSVERNLYHRFIDEETKDTKGRYFFVETDIKEFTTLKLDKKFHVL  230 (253)
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhcchhhhh--hHHHHHHHHHHHHHHHhccCccEEEEeccccchhhhhcchhhhHH
Confidence            999999999999999999999999999998666  5555555555443 56799999999999999 7779999999999


Q ss_pred             HHHHHhhchhhhhccCCeEEEEe
Q 035762          242 LTVLRHLGRISETRIGHHRVIIL  264 (268)
Q Consensus       242 l~iLRHl~Rl~E~R~g~~~~y~l  264 (268)
                      |+||||||||+|+||||+|+|++
T Consensus       231 l~~LRH~rRisE~R~ggltry~i  253 (253)
T KOG4832|consen  231 LNILRHCRRISEVRGGGLTRYVI  253 (253)
T ss_pred             HHHHHHHHHHhhhhcCCceeecC
Confidence            99999999999999999999986

>PF11362 DUF3161: Protein of unknown function (DUF3161); InterPro: IPR021504 This eukaryotic family of proteins has no known function

Probab=91.31  E-value=0.14  Score=41.15  Aligned_cols=40  Identities=30%  Similarity=0.282  Sum_probs=35.1

Q ss_pred             ccChHHhhhhhHHhhhhcCHHHHHHHHHHHHHHHHHhhhh
Q 035762          149 YITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHL  188 (268)
Q Consensus       149 ~IT~eEF~siP~YmrGRLTleqvN~~i~ein~~~~~Ky~i  188 (268)
                      .|+.++|.|+|.-.|+|--+++||+...-+......|...
T Consensus         7 pi~~~~f~sv~alvr~Rakl~diN~~yk~l~~~~~~kg~~   46 (90)
T PF11362_consen    7 PITWDEFLSVPALVRRRAKLDDINAVYKFLADKAFKKGKS   46 (90)
T ss_pred             CcchhhccccHHHHHhhhhcccccHHHHHHHHHHHHcCCc
Confidence            6999999999999999999999999988877766666554

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	268
2lyc_A	130	Spindle and kinetochore-associated protein 1 HOMO;	100.0
4aj5_A	91	SKA1, spindle and kinetochore-associated protein 1	99.89

>2lyc_A Spindle and kinetochore-associated protein 1 HOMO; SKA1, microtubule, SKA1-MTBD, protein binding; NMR {Caenorhabditis elegans}

Probab=100.00  E-value=9.5e-49  Score=325.73  Aligned_cols=122  Identities=25%  Similarity=0.348  Sum_probs=114.4

Q ss_pred             CCCCccccChHHhhhhhHHhhhhcCHHHHHHHHHHHHHHHHHhhhhhccchhhhcHHHHHHHHHHHh--HhhhhccCCee
Q 035762          143 GSPPLWYITSDELDSLSSYMRGRLTLEKVNAAVNDMATYAEANAHLISAPKKKLAGNLWERALELRD--IATVEAVKGKH  220 (268)
Q Consensus       143 ~i~~~~~IT~eEF~siP~YmrGRLTleqvN~~i~ein~~~~~Ky~il~~pkk~l~~~~~~r~~el~~--~~~~k~~kg~~  220 (268)
                      -|+++.|||+|||++||+|||||||||+||++|++||+++++||+||++|+++|+...|.++..+++  .+++++++|+|
T Consensus         3 ~i~~~~~IT~eEF~sIPkYmrGRlTle~lN~~i~~in~~~~~KY~il~~p~k~l~~~~~~~~~~~k~~e~~~~k~~~g~~   82 (130)
T 2lyc_A            3 DIRIVPQITDEEFKTIPKYQLGRLTLEMMNEIVSKMDDFLMKKSKILGKTNKQLTRSDREVLDNWRELEMKARKRLPTTL   82 (130)
T ss_dssp             SCCSSCCCCHHHHTTSCHHHHSSCCHHHHHHHHHHHHHHHHHHHHHTTCCTTTCCHHHHHHHHHHHHHHHHTCSCCSCSC
T ss_pred             CCceeeeecHHHHhccCHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhHHHHcCHHHHHHHHHHHHHHHhhcccCCCeE
Confidence            4678889999999999999999999999999999999999999999999999999988888888876  34567788999


Q ss_pred             eEecCccC-CCCccccchhhhHHHHHHhhchhhhhccCCeEEEEe
Q 035762          221 FFLENDVK-GPSLKLDNTGKAILTVLRHLGRISETRIGHHRVIIL  264 (268)
Q Consensus       221 F~~e~Dik-~~~lKlDkt~k~il~iLRHl~Rl~E~R~g~~~~y~l  264 (268)
                      ||+|+||+ ++++|+|++++++|+||||||||+|+||||+|+||=
T Consensus        83 F~~e~Dik~~~~~K~dkt~~~~L~iLRHl~RL~E~R~gg~~rYv~  127 (130)
T 2lyc_A           83 FFIETDIRPMLQDRLRPSFAKAIPCLRHIRRIREERCGPLTFYYP  127 (130)
T ss_dssp             CEEHHHHGGGSCTTSCSCHHHHHHHHHTTTSCCCEECSSCEEECS
T ss_pred             EeeHHHHHhhhccccchhhhHHHHHHHhhchHHHhccCCeeEEcc
Confidence            99999999 799999999999999999999999999999999983

>4aj5_A SKA1, spindle and kinetochore-associated protein 1; cell cycle, SKA complex, mitosis, cell division, kinetochore microtubule attachment; 3.32A {Homo sapiens}

Probab=99.89  E-value=7.5e-24  Score=165.59  Aligned_cols=82  Identities=21%  Similarity=0.300  Sum_probs=69.7

Q ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhhc--CCCCC------ccchHHHHHHHHHHHHHHHHHHHHHHHHHhhchhHHHHH
Q 035762            6 AGSSLDSLISSFNTRIADLQELVIARNM--YPVST------VADLSAIDAAVKAVELQVQAIKSRVREETEAIPKAKKLI   77 (268)
Q Consensus         6 ~~~~Le~l~s~~n~rI~~lk~l~~lR~~--~p~~~------~~~l~~l~~~L~~lE~qv~~~~~~lqeE~~al~~lk~L~   77 (268)
                      ++|+|||||+|||+||++||++++||++  +|+++      |+|+++|+++|++||.+|++|++.       +++||+|+
T Consensus         2 ~~s~LEdlc~hineKIs~ikk~L~Lr~~gqdP~lk~~L~Kig~Ei~~l~eLLn~~E~eV~~Qe~~-------~~sLKEL~   74 (91)
T 4aj5_A            2 ASSDLEQLCSHVNEKIGNIKKTLSLRNCGQEPTLKTVLNKIGDEIIVINELLNKLELEIQYQEQT-------NNSLKELC   74 (91)
T ss_dssp             -CCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHH
Confidence            4789999999999999999999999999  99998      999999999999999999999999       99999999


Q ss_pred             HHHHHHHHHHHHhhhcC
Q 035762           78 DASLRQQKILQNMSSYA   94 (268)
Q Consensus        78 ~~~~~q~~~lqhm~~nv   94 (268)
                      +++++++++++||++||
T Consensus        75 ~s~e~d~kdv~HLkeni   91 (91)
T 4aj5_A           75 ESLEEDYKDIEHLKENV   91 (91)
T ss_dssp             HHHHHCC----------
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999999996

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00