Citrus Sinensis ID: 036026

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440--
Protein Sequence
MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVHKQTVEDNKQEA
Secondary Structure (PSIPRED)
ccccccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHccccEEEEcccccccccHHHHHHHHHHHHHHHHcccHHHHccc
Secondary Structure Prediction (SSPRO)
ccccccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHccccccccccccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHccccccccccc
Coil and Loop (DISEMBL)
MSKSVEGVlaekypaykDRHKLALEREKQIKEKAEKARAyrfrdnsnfdskhptlppklallkekpivsgdssdqshddraaESQTISKMKFSqiekrpprvfrpppkpsggapagtnanpssgtppapppppgatpppppppppggppppppppgslprgvgsgdkvqraPELVEFYQTLMKREAKKDTSSlisstsntsdarSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVlkhfdwpegkADALREAAFEYQDLVKLEKQVssfvddpglpcESALKKMYKLLEKVEQSVYALLRTRDMAISRYRefgipvdwlldtgvvgkIKLSSVQLARKYMKRVSTELeamsrpekepnrEFLLLQGVRFAFRVhqfaggfdaeSMKAFEVLRSRVHKQTvednkqea
Flexible Loop (DISEMBL)
msksvegvlaekypaykdrhklALEREKQIKEKAEKArayrfrdnsnfdskhptlpPKLALLKEKPIvsgdssdqshddraaesqtiskmkfsqiekrpprvfrpppkpSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQTLMkreakkdtsslisstsntsdarsnMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTeleamsrpekepnrEFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSrvhkqtvednkqea
Low Complexity Region (SEG)
MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSkhptlppklallkekpIVSGDSSDQSHDDRAAESQTISKMKFSQIEkrpprvfrpppkpsggapagTNANpssgtppapppppgatpppppppppggppppppppgSLPRGVGSGDKVQRAPELVEFYQTLMKREAKKDtsslisstsntsDARSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVHKQTVEDNKQEA
Disordered region (IsUnstruct)
***********************************************************************************************************************************************************************************************************************SFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMK******************EFLLLQGVRFAFRVHQFAGGFDAESMKAFEVL****************
Disordered Region (DISOPRED)
**********EKYPAYKDRHKL******************************************************************************************************************************************************ELVEFY**************************************FLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYAL**********YREFGIPVDWLLDTGVVGKIKLSSVQLARKYM*********************LLLQGVRFAFRVHQFAGGFDAESMKAFEV*****************
Disordered Region (DISEMBL)
MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLALLKEKPI******************TISKMKFSQIEKRPPRVFRPPP*********************************************PPPGSLPRGVGSGDKVQRAPELVEFYQTLMKR*******************RSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVS***********EPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVH***********
Disordered Region (DISPRO)
*******VLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRD********PTLPPK*****E*******************SQTISKMKFSQIEKRPPRVFR****************************PGATPPPP*******************************PE*********K**********************NMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVH***********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKSVEGVLAEKYPAYxxxxxxxxxxxxxxxxxxxxxRAYRFRDNSNFDSKHPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVHKQTVEDNKQEA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	442	2.2.26 [Sep-21-2011]
Q9LI74	1004	Protein CHUP1, chloroplas	yes	no	0.961	0.423	0.722	1e-152

>sp|Q9LI74|CHUP1_ARATH Protein CHUP1, chloroplastic OS=Arabidopsis thaliana GN=CHUP1 PE=1 SV=1

 Score =  538 bits (1385), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 325/450 (72%), Positives = 370/450 (82%), Gaps = 25/450 (5%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLA 60
           MSKSV+ VL EKYPAYKDRHKLA+EREK IK KA++ARA RF  N         LPPKLA
Sbjct: 546 MSKSVDNVLDEKYPAYKDRHKLAVEREKHIKHKADQARAERFGGN-------VALPPKLA 598

Query: 61  LLKEKPIV-------SGDSSDQSHDD---RAAESQ-TISKMKFSQIEKRPPRVFRPPPKP 109
            LKEK +V       +GD S++S++    +A+E+  T++KMK   IEKRPPRV RPPP+ 
Sbjct: 599 QLKEKRVVVPSVITATGDQSNESNESNEGKASENAATVTKMKLVDIEKRPPRVPRPPPRS 658

Query: 110 SGGAPAGTNANPSS---GTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGD 166
           +GG  + TN  PS+        PPPPP      PPPPP GGPPPPPPPPG+L RG G G+
Sbjct: 659 AGGGKS-TNL-PSARPPLPGGGPPPPPPPPGGGPPPPPGGGPPPPPPPPGALGRGAGGGN 716

Query: 167 KVQRAPELVEFYQTLMKREAKKDTS-SLISS-TSNTSDARSNMIGEIENKSSFLLAVKAD 224
           KV RAPELVEFYQ+LMKRE+KK+ + SLISS T N+S AR+NMIGEIEN+S+FLLAVKAD
Sbjct: 717 KVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENRSTFLLAVKAD 776

Query: 225 VETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADAL 284
           VETQGDFVQSLA EVRA+SFT +EDL+ FV+WLDEELSFLVDERAVLKHFDWPEGKADAL
Sbjct: 777 VETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHFDWPEGKADAL 836

Query: 285 REAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRY 344
           REAAFEYQDL+KLEKQV+SFVDDP L CE ALKKMYKLLEKVEQSVYALLRTRDMAISRY
Sbjct: 837 REAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALLRTRDMAISRY 896

Query: 345 REFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRF 404
           +EFGIPVDWL DTGVVGKIKLSSVQLA+KYMKRV+ EL+++S  +K+PNREFLLLQGVRF
Sbjct: 897 KEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNREFLLLQGVRF 956

Query: 405 AFRVHQFAGGFDAESMKAFEVLRSRVHKQT 434
           AFRVHQFAGGFDAESMKAFE LRSR   ++
Sbjct: 957 AFRVHQFAGGFDAESMKAFEELRSRAKTES 986

Required for the positioning and movement of chloroplasts. Interacts with profilin and actin independent of its polymerization status. Regulates chloroplast localization by anchoring chloroplasts to the plasma membrane and forming a bridge to the actin cytoskeleton.
Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
255566821	998	conserved hypothetical protein [Ricinus	0.986	0.436	0.811	0.0
359472709	1003	PREDICTED: protein CHUP1, chloroplastic-	0.990	0.436	0.826	0.0
297737876	969	unnamed protein product [Vitis vinifera]	0.990	0.452	0.826	0.0
224111748	955	predicted protein [Populus trichocarpa]	0.972	0.450	0.778	1e-177
449493474	987	PREDICTED: protein CHUP1, chloroplastic-	0.995	0.445	0.746	1e-172
449434670	987	PREDICTED: protein CHUP1, chloroplastic-	0.995	0.445	0.746	1e-172
356498346	955	PREDICTED: protein CHUP1, chloroplastic-	0.981	0.454	0.763	1e-170
357488243	997	Protein CHUP1 [Medicago truncatula] gi|3	0.975	0.432	0.746	1e-168
356502487	964	PREDICTED: protein CHUP1, chloroplastic-	0.981	0.450	0.758	1e-165
356576275	973	PREDICTED: protein CHUP1, chloroplastic-	0.959	0.435	0.729	1e-165

>gi|255566821|ref|XP_002524394.1| conserved hypothetical protein [Ricinus communis] gi|223536355|gb|EEF38005.1| conserved hypothetical protein [Ricinus communis]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 362/446 (81%), Positives = 396/446 (88%), Gaps = 10/446 (2%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDS-------KHP 53
           MSKSVEGVL EKYPAYKDRHKLALEREKQIKE+AEKARA RF +NS+F S       K  
Sbjct: 552 MSKSVEGVLDEKYPAYKDRHKLALEREKQIKERAEKARAARFGENSSFQSIAKGGREKAV 611

Query: 54  TLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGA 113
           +LP +LA +KEKP+ SGDS+DQS++ +A +SQTISKMK +QIEKRP RV RPPPKPSGGA
Sbjct: 612 SLPSQLAQIKEKPVDSGDSNDQSNEGKAVDSQTISKMKLTQIEKRPTRVPRPPPKPSGGA 671

Query: 114 PAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPE 173
           PA TN   S+ +   PPPPP     P PPPPPGGPP PPPPPGSLPRG GSGDKV RAPE
Sbjct: 672 PADTN---STPSSGLPPPPPPPPGIPAPPPPPGGPPRPPPPPGSLPRGAGSGDKVHRAPE 728

Query: 174 LVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQ 233
           LVEFYQ+LMKREAKKDTSSLISSTSN S+ARSNMIGEIEN+SSFLLAVKADVE+QG+FVQ
Sbjct: 729 LVEFYQSLMKREAKKDTSSLISSTSNASEARSNMIGEIENRSSFLLAVKADVESQGEFVQ 788

Query: 234 SLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQD 293
           SLA EVRA+SFT +EDL+ FVNWLDEELSFLVDERAVLKHFDWPE KADALREAAFEYQD
Sbjct: 789 SLATEVRASSFTNIEDLLAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQD 848

Query: 294 LVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDW 353
           L+KLEKQVSSFVDDP LPCE+ALKKMYKLLEKVE SVYALLRTRDMAISRYREFGIP++W
Sbjct: 849 LMKLEKQVSSFVDDPNLPCEAALKKMYKLLEKVENSVYALLRTRDMAISRYREFGIPINW 908

Query: 354 LLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAG 413
           LLD+GVVGKIKLSSVQLA+KYMKRV++EL+AMS PEKEPNREFLLLQGVRFAFRVHQFAG
Sbjct: 909 LLDSGVVGKIKLSSVQLAKKYMKRVASELDAMSGPEKEPNREFLLLQGVRFAFRVHQFAG 968

Query: 414 GFDAESMKAFEVLRSRVHKQTVEDNK 439
           GFDAESMK FE LRSRVH Q VE+N+
Sbjct: 969 GFDAESMKTFEELRSRVHGQMVEENR 994

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359472709|ref|XP_002281154.2| PREDICTED: protein CHUP1, chloroplastic-like [Vitis vinifera]

 Score =  643 bits (1659), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/450 (82%), Positives = 391/450 (86%), Gaps = 12/450 (2%)

Query: 1    MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFD---------SK 51
            MSKSVEGVL EKYPAYKDRHKLALEREKQIKEKAEKARA RF D+S+            K
Sbjct: 556  MSKSVEGVLDEKYPAYKDRHKLALEREKQIKEKAEKARAERFGDSSDLKYESRAKAERDK 615

Query: 52   HPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSG 111
              TLPPKLA +KEKP+VS DSSDQS D +  +SQ  SKMK + IEKR PRV RPPPKPSG
Sbjct: 616  SVTLPPKLAKIKEKPLVSADSSDQSIDSKMEDSQVASKMKLAHIEKRAPRVPRPPPKPSG 675

Query: 112  GAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRA 171
            GAPAG  ANPSSG PP PPPPPGA PPPPPP     PP PPPPPGSLPRG GSGDKV RA
Sbjct: 676  GAPAGPGANPSSGVPPPPPPPPGAPPPPPPPGG---PPRPPPPPGSLPRGAGSGDKVHRA 732

Query: 172  PELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDF 231
            PELVEFYQTLMKREAKKDT SL+SSTSN +DARSNMIGEI NKSSFLLAVKADVETQGDF
Sbjct: 733  PELVEFYQTLMKREAKKDTPSLVSSTSNAADARSNMIGEIANKSSFLLAVKADVETQGDF 792

Query: 232  VQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEY 291
            VQSLA EVRAASFT +EDLV FVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEY
Sbjct: 793  VQSLATEVRAASFTKIEDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEY 852

Query: 292  QDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPV 351
            QDL+KLEK+VS+F DDP L CE+ALKKMY LLEKVEQSVYALLRTRDMAISRYREFGIPV
Sbjct: 853  QDLMKLEKRVSTFEDDPKLSCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPV 912

Query: 352  DWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQF 411
            DWLLD+GVVGKIKLSSVQLARKYMKRVS+EL+A+S PEKEPNREFL+LQGVRFAFRVHQF
Sbjct: 913  DWLLDSGVVGKIKLSSVQLARKYMKRVSSELDALSGPEKEPNREFLILQGVRFAFRVHQF 972

Query: 412  AGGFDAESMKAFEVLRSRVHKQTVEDNKQE 441
            AGGFDAESMK FE LRSRV  QT EDNK E
Sbjct: 973  AGGFDAESMKVFEELRSRVKTQTGEDNKLE 1002

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737876|emb|CBI27077.3| unnamed protein product [Vitis vinifera]

 Score =  643 bits (1658), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 372/450 (82%), Positives = 391/450 (86%), Gaps = 12/450 (2%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFD---------SK 51
           MSKSVEGVL EKYPAYKDRHKLALEREKQIKEKAEKARA RF D+S+            K
Sbjct: 522 MSKSVEGVLDEKYPAYKDRHKLALEREKQIKEKAEKARAERFGDSSDLKYESRAKAERDK 581

Query: 52  HPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSG 111
             TLPPKLA +KEKP+VS DSSDQS D +  +SQ  SKMK + IEKR PRV RPPPKPSG
Sbjct: 582 SVTLPPKLAKIKEKPLVSADSSDQSIDSKMEDSQVASKMKLAHIEKRAPRVPRPPPKPSG 641

Query: 112 GAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRA 171
           GAPAG  ANPSSG PP PPPPPGA PPPPPP     PP PPPPPGSLPRG GSGDKV RA
Sbjct: 642 GAPAGPGANPSSGVPPPPPPPPGAPPPPPPPGG---PPRPPPPPGSLPRGAGSGDKVHRA 698

Query: 172 PELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDF 231
           PELVEFYQTLMKREAKKDT SL+SSTSN +DARSNMIGEI NKSSFLLAVKADVETQGDF
Sbjct: 699 PELVEFYQTLMKREAKKDTPSLVSSTSNAADARSNMIGEIANKSSFLLAVKADVETQGDF 758

Query: 232 VQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEY 291
           VQSLA EVRAASFT +EDLV FVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEY
Sbjct: 759 VQSLATEVRAASFTKIEDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEY 818

Query: 292 QDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPV 351
           QDL+KLEK+VS+F DDP L CE+ALKKMY LLEKVEQSVYALLRTRDMAISRYREFGIPV
Sbjct: 819 QDLMKLEKRVSTFEDDPKLSCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIPV 878

Query: 352 DWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQF 411
           DWLLD+GVVGKIKLSSVQLARKYMKRVS+EL+A+S PEKEPNREFL+LQGVRFAFRVHQF
Sbjct: 879 DWLLDSGVVGKIKLSSVQLARKYMKRVSSELDALSGPEKEPNREFLILQGVRFAFRVHQF 938

Query: 412 AGGFDAESMKAFEVLRSRVHKQTVEDNKQE 441
           AGGFDAESMK FE LRSRV  QT EDNK E
Sbjct: 939 AGGFDAESMKVFEELRSRVKTQTGEDNKLE 968

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224111748|ref|XP_002315963.1| predicted protein [Populus trichocarpa] gi|222865003|gb|EEF02134.1| predicted protein [Populus trichocarpa]

 Score =  627 bits (1616), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 344/442 (77%), Positives = 372/442 (84%), Gaps = 12/442 (2%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLA 60
           MSKSVEGVL EKYPAYKDRHKLALEREK IKEKAEKARA +F           TLP KL+
Sbjct: 525 MSKSVEGVLDEKYPAYKDRHKLALEREKHIKEKAEKARAVKF-------IIPITLPAKLS 577

Query: 61  LLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNAN 120
            +KEKP+ SG+SS+QS D +  +SQT+SKMK +  EKR PRV RPPPK S GAP  TNAN
Sbjct: 578 QIKEKPVASGESSEQSSDGKDVDSQTVSKMKLAHTEKRAPRVPRPPPKSSAGAPVATNAN 637

Query: 121 PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQT 180
           PS G PP PP  P   PPPP  PP   PPP   P G+     GSGDKV RAPELVEFYQ+
Sbjct: 638 PSGGVPPPPPGAPPPPPPPPGGPPRPPPPPGSLPRGA-----GSGDKVHRAPELVEFYQS 692

Query: 181 LMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAEVR 240
           LMKREAKKDTSSLISSTSN S ARSNMIGEIEN+SSFLLAVKADVETQGDFVQSLA EVR
Sbjct: 693 LMKREAKKDTSSLISSTSNVSHARSNMIGEIENRSSFLLAVKADVETQGDFVQSLATEVR 752

Query: 241 AASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLEKQ 300
           AASF+T++DLV FVNWLDEELSFLVDERAVLKHFDWPE KADALREAAFEYQDL+KLE+Q
Sbjct: 753 AASFSTIDDLVAFVNWLDEELSFLVDERAVLKHFDWPESKADALREAAFEYQDLMKLERQ 812

Query: 301 VSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTGVV 360
           V+SFVDDP LPCE+ALKKMYKLLEKVE SVYALLRTRDMA+SRYREFGIP +WLLD+GVV
Sbjct: 813 VTSFVDDPNLPCEAALKKMYKLLEKVENSVYALLRTRDMAVSRYREFGIPTNWLLDSGVV 872

Query: 361 GKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAESM 420
           GKIKLSSVQLARKYMKRV++EL+ MS PEKEPNREFL+LQGVRFAFRVHQFAGGFDAESM
Sbjct: 873 GKIKLSSVQLARKYMKRVASELDTMSGPEKEPNREFLVLQGVRFAFRVHQFAGGFDAESM 932

Query: 421 KAFEVLRSRVHKQTVEDNKQEA 442
           KAFE LRSRV  Q  E+NK E 
Sbjct: 933 KAFEELRSRVRSQMGEENKMEG 954

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449493474|ref|XP_004159306.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  612 bits (1577), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 339/454 (74%), Positives = 380/454 (83%), Gaps = 14/454 (3%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRD--NSNFDSKHP----- 53
           MSKSVEGVL EKYPAYKDRHKLAL REKQ+KE+A++ARA +F +  NSN +S+       
Sbjct: 536 MSKSVEGVLDEKYPAYKDRHKLALAREKQLKERADQARAEKFGNLSNSNLNSEFKGKTEK 595

Query: 54  ----TLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKP 109
                LPPKL  +KEKP+V   ++D S +++  ES  IS+MK ++IEKRPPR  +PPP+P
Sbjct: 596 DRPVMLPPKLTQIKEKPVVPSITADASGENKTTESPAISRMKLAEIEKRPPRTPKPPPRP 655

Query: 110 SGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQ 169
           SGGA   TN NP  G P APP PP     PPPPP  G P PPPPP  SL +G G GDKV 
Sbjct: 656 SGGASVSTNPNPQGGVPAAPPLPPPPPGAPPPPPTGGPPRPPPPPG-SLSKGAG-GDKVH 713

Query: 170 RAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQG 229
           RAPELVEFYQTLMKREAKKDT  L S++SN SDARSNMIGEIEN+SSFL+AVKADVETQG
Sbjct: 714 RAPELVEFYQTLMKREAKKDTPLLSSTSSNVSDARSNMIGEIENRSSFLIAVKADVETQG 773

Query: 230 DFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAF 289
           DFV SLAAEVRAA+F+ +ED+V FVNWLDEELSFLVDERAVLKHFDWPEGKADALREA+F
Sbjct: 774 DFVMSLAAEVRAATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASF 833

Query: 290 EYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGI 349
           EYQDL+KLEK++++FVDDP L CE+ALKKMY LLEKVEQSVYALLRTRDMAISRYREFGI
Sbjct: 834 EYQDLMKLEKRITTFVDDPKLSCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGI 893

Query: 350 PVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVH 409
           PVDWL DTGVVGKIKLSSVQLARKYMKRV++EL+AMS PEKEPNREFL+LQGVRFAFRVH
Sbjct: 894 PVDWLSDTGVVGKIKLSSVQLARKYMKRVASELDAMSEPEKEPNREFLVLQGVRFAFRVH 953

Query: 410 QFAGGFDAESMKAFEVLRSRVH-KQTVEDNKQEA 442
           QFAGGFDAESMKAFE LRSRVH  Q  +DNKQEA
Sbjct: 954 QFAGGFDAESMKAFEELRSRVHTTQIGDDNKQEA 987

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449434670|ref|XP_004135119.1| PREDICTED: protein CHUP1, chloroplastic-like [Cucumis sativus]

 Score =  611 bits (1576), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 339/454 (74%), Positives = 380/454 (83%), Gaps = 14/454 (3%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRD--NSNFDSKHP----- 53
           MSKSVEGVL EKYPAYKDRHKLAL REKQ+KE+A++ARA +F +  NSN +S+       
Sbjct: 536 MSKSVEGVLDEKYPAYKDRHKLALAREKQLKERADQARAEKFGNLSNSNLNSEFKGKTEK 595

Query: 54  ----TLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKP 109
                LPPKL  +KEKP+V   ++D S +++  ES  IS+MK ++IEKRPPR  +PPP+P
Sbjct: 596 DRPVMLPPKLTQIKEKPVVPSVTADASGENKTTESPAISRMKLAEIEKRPPRTPKPPPRP 655

Query: 110 SGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQ 169
           SGGA   TN NP  G P APP PP     PPPPP  G P PPPPP  SL +G G GDKV 
Sbjct: 656 SGGASVSTNPNPQGGVPAAPPLPPPPPGAPPPPPTGGPPRPPPPPG-SLSKGAG-GDKVH 713

Query: 170 RAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQG 229
           RAPELVEFYQTLMKREAKKDT  L S++SN SDARSNMIGEIEN+SSFL+AVKADVETQG
Sbjct: 714 RAPELVEFYQTLMKREAKKDTPLLSSTSSNVSDARSNMIGEIENRSSFLIAVKADVETQG 773

Query: 230 DFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAF 289
           DFV SLAAEVRAA+F+ +ED+V FVNWLDEELSFLVDERAVLKHFDWPEGKADALREA+F
Sbjct: 774 DFVMSLAAEVRAATFSNIEDVVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREASF 833

Query: 290 EYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGI 349
           EYQDL+KLEK++++FVDDP L CE+ALKKMY LLEKVEQSVYALLRTRDMAISRYREFGI
Sbjct: 834 EYQDLMKLEKRITTFVDDPKLSCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGI 893

Query: 350 PVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVH 409
           PVDWL DTGVVGKIKLSSVQLARKYMKRV++EL+AMS PEKEPNREFL+LQGVRFAFRVH
Sbjct: 894 PVDWLSDTGVVGKIKLSSVQLARKYMKRVASELDAMSEPEKEPNREFLVLQGVRFAFRVH 953

Query: 410 QFAGGFDAESMKAFEVLRSRVH-KQTVEDNKQEA 442
           QFAGGFDAESMKAFE LRSRVH  Q  +DNKQEA
Sbjct: 954 QFAGGFDAESMKAFEELRSRVHTTQIGDDNKQEA 987

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498346|ref|XP_003518014.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  604 bits (1558), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 339/444 (76%), Positives = 374/444 (84%), Gaps = 10/444 (2%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLA 60
           MSKSV+G L EKYPAYKDRHKLAL REKQ+KEKAEKAR  RF           +LPPKL 
Sbjct: 518 MSKSVDGSLDEKYPAYKDRHKLALAREKQLKEKAEKARVLRF-------GSPISLPPKLT 570

Query: 61  LLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNAN 120
            +KEKP+VSG  +DQS D +  ++QTISKMK + IEKRP RV RPPP+PSGGA     AN
Sbjct: 571 QIKEKPVVSGTPNDQSDDGKNVDNQTISKMKLAHIEKRPTRVPRPPPRPSGGAAVTATAN 630

Query: 121 PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS-LPRGVGSGDKVQRAPELVEFYQ 179
           PS+G P APPPPP     PPPPPPP G PPPPPPP   L RG   GDKV RAP+LVEFYQ
Sbjct: 631 PSNGVPSAPPPPPPPPGAPPPPPPPPGGPPPPPPPPGSLSRGGMDGDKVHRAPQLVEFYQ 690

Query: 180 TLMKREAKKDTSSL-ISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQSLAAE 238
           TLMKREAKKDTSSL ++S SN SDARSNMIGEIEN+SSFLLAVKADVETQGDFV SLAAE
Sbjct: 691 TLMKREAKKDTSSLLVTSASNASDARSNMIGEIENRSSFLLAVKADVETQGDFVMSLAAE 750

Query: 239 VRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLVKLE 298
           VRAASF+ + DLV FVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDL+KLE
Sbjct: 751 VRAASFSDINDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLMKLE 810

Query: 299 KQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLLDTG 358
            +VS+FVDDP LPCE+ALKKMY LLEKVEQSVYALLRTRDMAISRY+EFGIPV+WL+D+G
Sbjct: 811 NRVSTFVDDPNLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYKEFGIPVNWLMDSG 870

Query: 359 VVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGFDAE 418
           VVGKIKLSSVQLA+KYMKRV++EL+ +S P+KEP REFL+LQGVRFAFRVHQFAGGFDAE
Sbjct: 871 VVGKIKLSSVQLAKKYMKRVASELDELSGPDKEPAREFLVLQGVRFAFRVHQFAGGFDAE 930

Query: 419 SMKAFEVLRSRVH-KQTVEDNKQE 441
           SMKAFE LRSR+   Q  ED+K E
Sbjct: 931 SMKAFEELRSRIQTSQAGEDSKSE 954

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357488243|ref|XP_003614409.1| Protein CHUP1 [Medicago truncatula] gi|355515744|gb|AES97367.1| Protein CHUP1 [Medicago truncatula]

 Score =  597 bits (1539), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 329/441 (74%), Positives = 372/441 (84%), Gaps = 10/441 (2%)

Query: 1   MSKS-VEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSK-------H 52
           MSKS V+  + EKYPAYKDRHKLA+ RE  +KEKAEKAR  +F ++S+ +         +
Sbjct: 540 MSKSSVDASVDEKYPAYKDRHKLAMARESDLKEKAEKARVQKFGNSSSLNMTKIERERPN 599

Query: 53  PTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGG 112
            +LPPKL+ +KEKPIV   S+DQS D +  E+QTISK+KF+ IEKRP RV RPPPKPSGG
Sbjct: 600 ISLPPKLSKIKEKPIVHASSNDQSEDGKNVENQTISKIKFADIEKRPTRVPRPPPKPSGG 659

Query: 113 APAGTNANPSSGTPPAPP-PPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRA 171
               TN+NP++G P AP  PPP   PP  PPPPPGGPPPPPPPP  L +G    DKV RA
Sbjct: 660 GSVSTNSNPANGIPSAPSIPPPPPRPPGGPPPPPGGPPPPPPPPRGLSKGAADDDKVHRA 719

Query: 172 PELVEFYQTLMKREAKKDTSSL-ISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGD 230
           P+LVEFYQ+LMKREAKKDTSSL +SST NTSDAR+NMIGEIEN+S+FLLAVKADVETQGD
Sbjct: 720 PQLVEFYQSLMKREAKKDTSSLLVSSTGNTSDARNNMIGEIENRSTFLLAVKADVETQGD 779

Query: 231 FVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFE 290
           FV SLA EVRA+SF+ +EDLV FVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFE
Sbjct: 780 FVTSLATEVRASSFSDIEDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFE 839

Query: 291 YQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIP 350
           YQDL+KLE +VS+FVDDP L CE+ALKKMY LLEKVEQSVYALLRTRDMAISRYREFGIP
Sbjct: 840 YQDLMKLENRVSTFVDDPKLSCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYREFGIP 899

Query: 351 VDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQ 410
           ++WL D GVVGKIKLSSVQLARKYMKRV++EL+A+S PEKEP REFL+LQGVRFAFRVHQ
Sbjct: 900 INWLQDAGVVGKIKLSSVQLARKYMKRVASELDALSGPEKEPAREFLILQGVRFAFRVHQ 959

Query: 411 FAGGFDAESMKAFEVLRSRVH 431
           FAGGFDAESMKAFE LRSR+ 
Sbjct: 960 FAGGFDAESMKAFEDLRSRIQ 980

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356502487|ref|XP_003520050.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  589 bits (1518), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 339/447 (75%), Positives = 374/447 (83%), Gaps = 13/447 (2%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFDSKHPTLPPKLA 60
           MSKSV+G L EKYP YKDRHKLAL REKQ+KEKAEKAR  RF           +LPPKL 
Sbjct: 524 MSKSVDGALDEKYPVYKDRHKLALAREKQLKEKAEKARVLRF-------GSTISLPPKLT 576

Query: 61  LLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNAN 120
            +KEKP+VSG  ++QS D +  ++Q+ISKMK + IEKRP RV RPPPKPSGG  A     
Sbjct: 577 QIKEKPVVSGTPNEQSDDGKNVDNQSISKMKLAHIEKRPTRVPRPPPKPSGGGAAAAVTT 636

Query: 121 ---PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEF 177
              PS+  P APPPPP     PPPPPPPGGPPPPPPPPGSL RG   GDKV RAP+LVEF
Sbjct: 637 NANPSNEVPSAPPPPPPPPGAPPPPPPPGGPPPPPPPPGSLSRGGMDGDKVHRAPQLVEF 696

Query: 178 YQTLMKREAKKDTSS--LISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQSL 235
           YQTLMKREAKKDTSS  L++S SN SDARSNMIGEIEN+SSFLLAVKADVETQGDFV SL
Sbjct: 697 YQTLMKREAKKDTSSSLLVTSASNASDARSNMIGEIENRSSFLLAVKADVETQGDFVMSL 756

Query: 236 AAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLV 295
           AAEVRAASF+ + DLV FVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDL+
Sbjct: 757 AAEVRAASFSDINDLVAFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDLM 816

Query: 296 KLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWLL 355
           KLE +VS+FVDDP LPCE+ALKKMY LLEKVEQSVYALLRTRDMAISRY+EFGIPV+WL+
Sbjct: 817 KLENRVSTFVDDPNLPCEAALKKMYSLLEKVEQSVYALLRTRDMAISRYKEFGIPVNWLM 876

Query: 356 DTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGF 415
           D+GVVGKIKLSSVQLA+KYMKRV++EL+ +S PEKEP REFL+LQGVRFAFRVHQFAGGF
Sbjct: 877 DSGVVGKIKLSSVQLAKKYMKRVASELDELSGPEKEPAREFLVLQGVRFAFRVHQFAGGF 936

Query: 416 DAESMKAFEVLRSRVH-KQTVEDNKQE 441
           DAESMKAFE LR+R+   Q  EDNK E
Sbjct: 937 DAESMKAFEDLRNRIQASQAGEDNKTE 963

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576275|ref|XP_003556258.1| PREDICTED: protein CHUP1, chloroplastic-like [Glycine max]

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 319/437 (72%), Positives = 356/437 (81%), Gaps = 13/437 (2%)

Query: 1   MSKSVEGVLAEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSNFD------SKHPT 54
           MS +V   L EKYPAYKDRHKLAL+REKQIKEKAEKARA +F DNSN +       +  +
Sbjct: 530 MSNTVVAYLDEKYPAYKDRHKLALQREKQIKEKAEKARAEKFGDNSNLNMTKAERERTTS 589

Query: 55  LPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAP 114
           L PKL  LKEK  VSG  +D   + +  ++QTISKMK + IEKRPPRV +PPPKPS GAP
Sbjct: 590 LLPKLTQLKEKAYVSGSPNDHPDNVKNVDNQTISKMKLAHIEKRPPRVPQPPPKPSDGAP 649

Query: 115 AGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPEL 174
              N+NPS+G   APP      PPPPPP PPGG  P P   G+L RG  +GDKV RAPEL
Sbjct: 650 VSANSNPSNGVSCAPP----QPPPPPPPEPPGGSLPTPL--GNLSRGELAGDKVHRAPEL 703

Query: 175 VEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQGDFVQS 234
           VEFYQTLMK EAKKDTS LISST+   DARSNMIGEIEN+SSFLLAVKADVETQGDFV S
Sbjct: 704 VEFYQTLMKLEAKKDTS-LISSTTYPFDARSNMIGEIENRSSFLLAVKADVETQGDFVIS 762

Query: 235 LAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGKADALREAAFEYQDL 294
           LA EVRAASF+ +EDLV FVNWLDEELSFLVDE+AVLKHFDWPEGK DA+REAAFEY DL
Sbjct: 763 LATEVRAASFSKIEDLVAFVNWLDEELSFLVDEQAVLKHFDWPEGKTDAMREAAFEYLDL 822

Query: 295 VKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYREFGIPVDWL 354
           +KLEKQVS+F DDP LPC++AL+KMY LLEKVEQS+YALLRTRDMAISRY+EFGIPV WL
Sbjct: 823 MKLEKQVSTFTDDPKLPCQTALQKMYSLLEKVEQSIYALLRTRDMAISRYKEFGIPVTWL 882

Query: 355 LDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGG 414
           LDTG+VGKIKLSSVQLA  YMKRV++ELE +S P+KEP REFL+LQGV FAFRVHQFAGG
Sbjct: 883 LDTGLVGKIKLSSVQLANMYMKRVASELEILSGPKKEPTREFLILQGVHFAFRVHQFAGG 942

Query: 415 FDAESMKAFEVLRSRVH 431
           FD ESMK FE LRSR+H
Sbjct: 943 FDTESMKVFEELRSRIH 959

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	442
TAIR|locus:2102385	1004	CHUP1 "CHLOROPLAST UNUSUAL POS	0.638	0.280	0.788	3.7e-133
TAIR|locus:2831359	642	AT4G18570 [Arabidopsis thalian	0.615	0.423	0.567	5e-76
TAIR|locus:2007755	558	AT1G48280 "AT1G48280" [Arabido	0.615	0.487	0.454	2.3e-64
TAIR|locus:2007477	392	AT1G07120 "AT1G07120" [Arabido	0.576	0.650	0.463	2.5e-56

TAIR|locus:2102385 CHUP1 "CHLOROPLAST UNUSUAL POSITIONING 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 1131 (403.2 bits), Expect = 3.7e-133, Sum P(2) = 3.7e-133
 Identities = 224/284 (78%), Positives = 250/284 (88%)

Query:   157 SLPRGVGSGDKVQRAPELVEFYQTLMKREAKKDXXXXXXXXXXXXD--ARSNMIGEIENK 214
             +L RG G G+KV RAPELVEFYQ+LMKRE+KK+               AR+NMIGEIEN+
Sbjct:   707 ALGRGAGGGNKVHRAPELVEFYQSLMKRESKKEGAPSLISSGTGNSSAARNNMIGEIENR 766

Query:   215 SSFLLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHF 274
             S+FLLAVKADVETQGDFVQSLA EVRA+SFT +EDL+ FV+WLDEELSFLVDERAVLKHF
Sbjct:   767 STFLLAVKADVETQGDFVQSLATEVRASSFTDIEDLLAFVSWLDEELSFLVDERAVLKHF 826

Query:   275 DWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALL 334
             DWPEGKADALREAAFEYQDL+KLEKQV+SFVDDP L CE ALKKMYKLLEKVEQSVYALL
Sbjct:   827 DWPEGKADALREAAFEYQDLMKLEKQVTSFVDDPNLSCEPALKKMYKLLEKVEQSVYALL 886

Query:   335 RTRDMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNR 394
             RTRDMAISRY+EFGIPVDWL DTGVVGKIKLSSVQLA+KYMKRV+ EL+++S  +K+PNR
Sbjct:   887 RTRDMAISRYKEFGIPVDWLSDTGVVGKIKLSSVQLAKKYMKRVAYELDSVSGSDKDPNR 946

Query:   395 EFLLLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRVHKQTVEDN 438
             EFLLLQGVRFAFRVHQFAGGFDAESMKAFE LRSR   ++ ++N
Sbjct:   947 EFLLLQGVRFAFRVHQFAGGFDAESMKAFEELRSRAKTESGDNN 990

GO:0005634 "nucleus" evidence=ISM

GO:0009507 "chloroplast" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0009902 "chloroplast relocation" evidence=RCA;IMP

GO:0006364 "rRNA processing" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0019684 "photosynthesis, light reaction" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2831359 AT4G18570 [Arabidopsis thaliana (taxid:3702)]

 Score = 766 (274.7 bits), Expect = 5.0e-76, P = 5.0e-76
 Identities = 159/280 (56%), Positives = 200/280 (71%)

Query:   167 KVQRAPELVEFYQTLMKREA---KKDXXXXXXXXXXXXDARSN---MIGEIENKSSFLLA 220
             KV+R PE+VEFY +LM+R++   ++D             A SN   MIGEIEN+S +LLA
Sbjct:   352 KVRRVPEVVEFYHSLMRRDSTNSRRDSTGGGNAAAEAILANSNARDMIGEIENRSVYLLA 411

Query:   221 VKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWPEGK 280
             +K DVETQGDF++ L  EV  A+F+ +ED+V FV WLD+ELS+LVDERAVLKHF+WPE K
Sbjct:   412 IKTDVETQGDFIRFLIKEVGNAAFSDIEDVVPFVKWLDDELSYLVDERAVLKHFEWPEQK 471

Query:   281 ADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMA 340
             ADALREAAF Y DL KL  + S F +DP     SALKKM  L EK+E  VY+L R R+ A
Sbjct:   472 ADALREAAFCYFDLKKLISEASRFREDPRQSSSSALKKMQALFEKLEHGVYSLSRMRESA 531

Query:   341 ISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQ 400
              ++++ F IPVDW+L+TG+  +IKL+SV+LA KYMKRVS ELEA+      P  E L++Q
Sbjct:   532 ATKFKSFQIPVDWMLETGITSQIKLASVKLAMKYMKRVSAELEAIEGGG--PEEEELIVQ 589

Query:   401 GVRFAFRVHQFAGGFDAESMKAFEVLRSRVHKQTVEDNKQ 440
             GVRFAFRVHQFAGGFDAE+MKAFE LR +     V+   Q
Sbjct:   590 GVRFAFRVHQFAGGFDAETMKAFEELRDKARSCHVQCQSQ 629

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007755 AT1G48280 "AT1G48280" [Arabidopsis thaliana (taxid:3702)]

 Score = 656 (236.0 bits), Expect = 2.3e-64, P = 2.3e-64
 Identities = 124/273 (45%), Positives = 191/273 (69%)

Query:   159 PRGVGSGDKVQRAPELVEFYQTLMKREAKKDXXXXXXXXXXXXD-ARSNMIGEIENKSSF 217
             PR +    + Q++P + + +Q L K++  ++            + A ++++GEI+N+S+ 
Sbjct:   270 PRPLAKAARAQKSPPVSQLFQLLNKQDNSRNLSQSVNGNKSQVNSAHNSIVGEIQNRSAH 329

Query:   218 LLAVKADVETQGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFDWP 277
             L+A+KAD+ET+G+F+  L  +V    F+ +ED++ FV+WLD+EL+ L DERAVLKHF WP
Sbjct:   330 LIAIKADIETKGEFINDLIQKVLTTCFSDMEDVMKFVDWLDKELATLADERAVLKHFKWP 389

Query:   278 EGKADALREAAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTR 337
             E KAD L+EAA EY++L KLEK++SS+ DDP +    ALKKM  LL+K EQ +  L+R R
Sbjct:   390 EKKADTLQEAAVEYRELKKLEKELSSYSDDPNIHYGVALKKMANLLDKSEQRIRRLVRLR 449

Query:   338 DMAISRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFL 397
               ++  Y++F IPV+W+LD+G++ KIK +S++LA+ YM RV+ EL++    ++E  +E L
Sbjct:   450 GSSMRSYQDFKIPVEWMLDSGMICKIKRASIKLAKTYMNRVANELQSARNLDRESTKEAL 509

Query:   398 LLQGVRFAFRVHQFAGGFDAESMKAFEVLRSRV 430
             LLQGVRFA+R HQFAGG D E++ A E ++ RV
Sbjct:   510 LLQGVRFAYRTHQFAGGLDPETLCALEEIKQRV 542

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2007477 AT1G07120 "AT1G07120" [Arabidopsis thaliana (taxid:3702)]

 Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
 Identities = 121/261 (46%), Positives = 173/261 (66%)

Query:   168 VQRAPELVEFYQTLMKREAKKDXXXXXXXXXXXXDARSNMIGEIENKSSFLLAVKADVET 227
             V+RAPE+VEFY+ L KRE+                 R NMIGEIEN+S +L  +K+D + 
Sbjct:   128 VRRAPEVVEFYRALTKRESHMGNKINQNGVLSPAFNR-NMIGEIENRSKYLSDIKSDTDR 186

Query:   228 QGDFVQSLAAEVRAASFTTVEDLVVFVNWLDEELSFLVDERAVLKHFD-WPEGKADALRE 286
               D +  L ++V AA+FT + ++  FV W+DEELS LVDERAVLKHF  WPE K D+LRE
Sbjct:   187 HRDHIHILISKVEAATFTDISEVETFVKWIDEELSSLVDERAVLKHFPKWPERKVDSLRE 246

Query:   287 AAFEYQDLVKLEKQVSSFVDDPGLPCESALKKMYKLLEKVEQSVYALLRTRDMAISRYRE 346
             AA  Y+    L  ++ SF D+P      AL+++  L +++E+SV    + RD    RY++
Sbjct:   247 AACNYKRPKNLGNEILSFKDNPKDSLTQALQRIQSLQDRLEESVNNTEKMRDSTGKRYKD 306

Query:   347 FGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAF 406
             F IP +W+LDTG++G++K SS++LA++YMKR++ ELE+ +   KE N   L+LQGVRFA+
Sbjct:   307 FQIPWEWMLDTGLIGQLKYSSLRLAQEYMKRIAKELES-NGSGKEGN---LMLQGVRFAY 362

Query:   407 RVHQFAGGFDAESMKAFEVLR 427
              +HQFAGGFD E++  F  L+
Sbjct:   363 TIHQFAGGFDGETLSIFHELK 383


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.130   0.356    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      442       358   0.00081  117 3  11 22  0.42    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  595 (63 KB)
  Total size of DFA:  200 KB (2113 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.98u 0.08s 28.06t   Elapsed:  00:00:01
  Total cpu time:  27.98u 0.08s 28.06t   Elapsed:  00:00:01
  Start:  Mon May 20 21:49:21 2013   End:  Mon May 20 21:49:22 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009941 "chloroplast envelope" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LI74	CHUP1_ARATH	No assigned EC number	0.7222	0.9615	0.4233	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00030273001	SubName- Full=Chromosome chr1 scaffold_5, whole genome shotgun sequence; (959 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00002921001	SubName- Full=Chromosome chr18 scaffold_137, whole genome shotgun sequence; (825 aa)				•			•		0.413

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	442
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	8e-09
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-08
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-08
PRK12438	991	PRK12438, PRK12438, hypothetical protein; Provisio	2e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-07
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	3e-07
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-07
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	8e-07
COG5178	2365	COG5178, PRP8, U5 snRNP spliceosome subunit [RNA p	9e-07
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-06
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	2e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-06
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-06
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	2e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-06
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	3e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	5e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	5e-06
pfam04652	315	pfam04652, DUF605, Vta1 like	6e-06
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	8e-06
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	1e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	2e-05
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	2e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	4e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	4e-05
PRK14965	576	PRK14965, PRK14965, DNA polymerase III subunits ga	4e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	5e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	5e-05
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	5e-05
pfam07174	297	pfam07174, FAP, Fibronectin-attachment protein (FA	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	6e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	6e-05
PRK14723	767	PRK14723, flhF, flagellar biosynthesis regulator F	6e-05
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	7e-05
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	7e-05
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	7e-05
pfam12526	115	pfam12526, DUF3729, Protein of unknown function (D	7e-05
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	8e-05
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	9e-05
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	9e-05
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	1e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	1e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	1e-04
PRK13729	475	PRK13729, PRK13729, conjugal transfer pilus assemb	1e-04
PTZ00144	418	PTZ00144, PTZ00144, dihydrolipoamide succinyltrans	1e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	1e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	1e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	2e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	2e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	2e-04
pfam05518	753	pfam05518, Totivirus_coat, Totivirus coat protein	2e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	2e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	2e-04
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	2e-04
pfam07415	489	pfam07415, Herpes_LMP2, Gammaherpesvirus latent me	2e-04
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	2e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	3e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	3e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-04
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	3e-04
pfam06682	317	pfam06682, DUF1183, Protein of unknown function (D	3e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	4e-04
pfam06346	160	pfam06346, Drf_FH1, Formin Homology Region 1	4e-04
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	4e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	4e-04
PRK13406	584	PRK13406, bchD, magnesium chelatase subunit D; Pro	4e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	4e-04
pfam06003	264	pfam06003, SMN, Survival motor neuron protein (SMN	4e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	5e-04
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	5e-04
PRK00404	141	PRK00404, tatB, sec-independent translocase; Provi	5e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	6e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	6e-04
pfam03276	582	pfam03276, Gag_spuma, Spumavirus gag protein	6e-04
PRK11633	226	PRK11633, PRK11633, cell division protein DedD; Pr	6e-04
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	6e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	7e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	8e-04
PHA03291	401	PHA03291, PHA03291, envelope glycoprotein I; Provi	8e-04
PRK01297	475	PRK01297, PRK01297, ATP-dependent RNA helicase Rhl	8e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	9e-04
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	9e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	9e-04
pfam06682	317	pfam06682, DUF1183, Protein of unknown function (D	9e-04
PRK14959	624	PRK14959, PRK14959, DNA polymerase III subunits ga	9e-04
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.001
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
pfam10349	111	pfam10349, WWbp, WW-domain ligand protein	0.001
PRK09111	598	PRK09111, PRK09111, DNA polymerase III subunits ga	0.001
pfam12238	201	pfam12238, MSA-2c, Merozoite surface antigen 2c	0.001
pfam01213	313	pfam01213, CAP_N, Adenylate cyclase associated (CA	0.001
pfam09606	768	pfam09606, Med15, ARC105 or Med15 subunit of Media	0.001
PRK09752	1250	PRK09752, PRK09752, adhesin; Provisional	0.001
TIGR02927	579	TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena	0.001
PRK14952	584	PRK14952, PRK14952, DNA polymerase III subunits ga	0.001
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.001
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PHA03247	3151	PHA03247, PHA03247, large tegument protein UL36; P	0.002
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.002
PRK14950	585	PRK14950, PRK14950, DNA polymerase III subunits ga	0.002
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PHA03307	1352	PHA03307, PHA03307, transcriptional regulator ICP4	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
PRK07994	647	PRK07994, PRK07994, DNA polymerase III subunits ga	0.002
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.002
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.002
smart00818	165	smart00818, Amelogenin, Amelogenins, cell adhesion	0.002
TIGR00601	378	TIGR00601, rad23, UV excision repair protein Rad23	0.002
pfam06070	777	pfam06070, Herpes_UL32, Herpesvirus large structur	0.002
pfam13388	422	pfam13388, DUF4106, Protein of unknown function (D	0.002
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.002
PRK03100	136	PRK03100, PRK03100, sec-independent translocase; P	0.002
pfam04834	97	pfam04834, Adeno_E3_14_5, Early E3 14	0.002
pfam10152	147	pfam10152, DUF2360, Predicted coiled-coil domain-c	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.003
PRK14951	618	PRK14951, PRK14951, DNA polymerase III subunits ga	0.003
PRK14971	614	PRK14971, PRK14971, DNA polymerase III subunits ga	0.003
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.003
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.003
PHA03378	991	PHA03378, PHA03378, EBNA-3B; Provisional	0.003
pfam10138	98	pfam10138, Tellurium_res, Tellurium resistance pro	0.003
PRK06975	656	PRK06975, PRK06975, bifunctional uroporphyrinogen-	0.003
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.003
pfam09849	234	pfam09849, DUF2076, Uncharacterized protein conser	0.003
PRK09429	275	PRK09429, mepA, penicillin-insensitive murein endo	0.003
PRK11855	547	PRK11855, PRK11855, dihydrolipoamide acetyltransfe	0.003
PRK07764	824	PRK07764, PRK07764, DNA polymerase III subunits ga	0.004
PRK14948	620	PRK14948, PRK14948, DNA polymerase III subunits ga	0.004
pfam12868	135	pfam12868, DUF3824, Domain of unknwon function (DU	0.004
PLN02983	274	PLN02983, PLN02983, biotin carboxyl carrier protei	0.004
pfam09770	804	pfam09770, PAT1, Topoisomerase II-associated prote	0.004
PHA01732	94	PHA01732, PHA01732, proline-rich protein	0.004
PRK11892	464	PRK11892, PRK11892, pyruvate dehydrogenase subunit	0.004

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 56.1 bits (135), Expect = 8e-09
 Identities = 27/67 (40%), Positives = 28/67 (41%), Gaps = 2/67 (2%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPP--PGGPPPPPPPPG 156
                  P  P    P      P    P A PPPP A P  PPPPP  P  PPPP P PG
Sbjct: 50  TAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPPPPAPEPG 109

Query: 157 SLPRGVG 163
            +   VG
Sbjct: 110 RIDNAVG 116

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 54.9 bits (132), Expect = 2e-08
 Identities = 26/55 (47%), Positives = 26/55 (47%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           PPP PS  A A   A P    PPA PP P    P   PPPP   P  PPPP   P
Sbjct: 44  PPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDP 98

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 54.5 bits (131), Expect = 3e-08
 Identities = 23/55 (41%), Positives = 25/55 (45%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P    +  APA     P    PPAP P      PPPPP  P  PPPPP  P + P
Sbjct: 48  PSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDPNAPP 102

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional

 Score = 52.9 bits (127), Expect = 2e-07
 Identities = 22/49 (44%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 112 GAPAGTNANPSSGTPPAPPPPPGATPPPPP---PPPPGGPPPPPPPPGS 157
           G   G  A    G   A  PPPGA PP PP   PPP    PP  PP G 
Sbjct: 896 GPGTGRVATAPGGDA-ASAPPPGAGPPAPPQAVPPPRTTQPPAAPPRGP 943

Length = 991

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 20/57 (35%), Positives = 23/57 (40%), Gaps = 2/57 (3%)

Query: 107 PKPSGGAPAGTNANPSSGTPPAPPPPPGATPPP--PPPPPPGGPPPPPPPPGSLPRG 161
           P  +   PA     PS+      P  P   PPP  PP P P  P   PPPP + P  
Sbjct: 34  PATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNA 90

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 18/42 (42%), Positives = 20/42 (47%)

Query: 113 APAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPP 154
            PA  NA+P+   PP         P  PPPPPP   PP P P
Sbjct: 33  LPATANADPAPPPPPPSTAAAAPAPAAPPPPPPPAAPPAPQP 74

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 52.2 bits (125), Expect = 5e-07
 Identities = 31/85 (36%), Positives = 34/85 (40%), Gaps = 8/85 (9%)

Query: 98   RPP--RVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPP------PPPPPGGPP 149
            RPP  R+ RP    S  + A     P     P  PPPP   P PP      PPPPP   P
Sbjct: 2880 RPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQPQPPPPPPPRP 2939

Query: 150  PPPPPPGSLPRGVGSGDKVQRAPEL 174
             PP  P + P G G        P L
Sbjct: 2940 QPPLAPTTDPAGAGEPSGAVPQPWL 2964

Length = 3151

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 48.2 bits (115), Expect = 8e-07
 Identities = 17/55 (30%), Positives = 20/55 (36%)

Query: 108 KPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGV 162
                 P    +  ++G PP PPP       PPPP  P  PP  P P       V
Sbjct: 53  VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTV 107

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|227505 COG5178, PRP8, U5 snRNP spliceosome subunit [RNA processing and modification]

 Score = 51.1 bits (122), Expect = 9e-07
 Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 20/106 (18%)

Query: 123 SGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQTLM 182
           +  PP  PPPP   PPPP   PP  PPPPPPP      GV    + ++   +V      +
Sbjct: 2   ASLPPGNPPPP---PPPPGFEPPSQPPPPPPP------GVNVKKRSRKQLSIVG----DI 48

Query: 183 KREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKADVETQ 228
              +     SL       SD    +    + K+  +L +KA +  +
Sbjct: 49  LGHSGNPIYSL-----RVSDKPVKL--GNKAKTLHVLTLKAPIPPE 87

Length = 2365

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 50.4 bits (121), Expect = 1e-06
 Identities = 19/83 (22%), Positives = 26/83 (31%), Gaps = 2/83 (2%)

Query: 96  EKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPP- 154
              P      P   +   P     +      PA  P P A P P PP  P     P  P 
Sbjct: 439 PAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAPAPPAAPAPAAAPAAPA 498

Query: 155 PGSLPRGVGSGDKVQRA-PELVE 176
             + P G      ++   PE++ 
Sbjct: 499 APAAPAGADDAATLRERWPEILA 521

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 12/56 (21%), Positives = 14/56 (25%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
                +  A A   A  +       P PP A  P  PP P         P      
Sbjct: 47  AAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102

Length = 1228

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 49.1 bits (117), Expect = 2e-06
 Identities = 26/69 (37%), Positives = 27/69 (39%), Gaps = 4/69 (5%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
           PPP P   A A     P+   PP PPPP     P P  P    PPPP  P    P  V  
Sbjct: 43  PPPPPPSTAAAA----PAPAAPPPPPPPAAPPAPQPDDPNAAPPPPPADPNAPPPPPVDP 98

Query: 165 GDKVQRAPE 173
                 APE
Sbjct: 99  NAPPPPAPE 107

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 50.3 bits (120), Expect = 2e-06
 Identities = 27/93 (29%), Positives = 33/93 (35%), Gaps = 15/93 (16%)

Query: 93   SQIEKRPP------RVFRP--PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPP 144
             +   RP       R  RP  PP+ +       +     G  P  P PP    P PPPP 
Sbjct: 2571 PRPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPS 2630

Query: 145  P-------GGPPPPPPPPGSLPRGVGSGDKVQR 170
            P          PPP  PP   PR   +  +V R
Sbjct: 2631 PSPAANEPDPHPPPTVPPPERPRDDPAPGRVSR 2663

Length = 3151

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 27/54 (50%), Positives = 28/54 (51%), Gaps = 2/54 (3%)

Query: 105 PPPKPSGGA--PAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
           PPP P G    P        +  PP PP P G   PPPPPP PG P  PPPPPG
Sbjct: 87  PPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPG 140

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 49.4 bits (118), Expect = 2e-06
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            P    P P     AP+      ++   P   P      PPP PP P  PP P  P  S 
Sbjct: 370 KPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPE-SA 428

Query: 159 PRGVGSGDKVQRAPE 173
           P+   +   V   P+
Sbjct: 429 PKLTRAAIPVDEKPK 443

Length = 585

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 49.5 bits (119), Expect = 3e-06
 Identities = 14/51 (27%), Positives = 18/51 (35%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
                +  A +   A P++  P AP P P A   P  PP P         P
Sbjct: 46  AAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Length = 1228

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 49.4 bits (118), Expect = 3e-06
 Identities = 22/69 (31%), Positives = 23/69 (33%), Gaps = 13/69 (18%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPP---PPPPGGPPPPPPP 154
           R P+  RP   P GG           G PP P  P  A P P        P  PP P PP
Sbjct: 693 RAPQAPRPGGPPGGGG----------GLPPPPDLPAAAGPAPCGSSLIASPTAPPEPEPP 742

Query: 155 PGSLPRGVG 163
                 G  
Sbjct: 743 GAEQADGAE 751

Length = 753

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 48.8 bits (116), Expect = 5e-06
 Identities = 28/69 (40%), Positives = 33/69 (47%), Gaps = 3/69 (4%)

Query: 104  RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
              P  P     A   A P + +P  P PPP +  P  PPPPPG PPP  P  GS+  G  
Sbjct: 2802 WDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPGPPPPSLPLGGSVAPG-- 2859

Query: 164  SGDKVQRAP 172
             GD  +R P
Sbjct: 2860 -GDVRRRPP 2867

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.7 bits (117), Expect = 5e-06
 Identities = 13/66 (19%), Positives = 17/66 (25%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
               P+    A   A P+   P A  P     P            PP     + P     
Sbjct: 54  AASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

Query: 165 GDKVQR 170
            D+V  
Sbjct: 114 EDEVTP 119

Length = 1228

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 47.4 bits (113), Expect = 6e-06
 Identities = 20/74 (27%), Positives = 22/74 (29%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            P    P        P   ++   S  PPAP      TPPP P  P    PPP P     
Sbjct: 186 DPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPP 245

Query: 159 PRGVGSGDKVQRAP 172
           P            P
Sbjct: 246 PPVQQVPPLSTAKP 259

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 48.0 bits (115), Expect = 8e-06
 Identities = 15/57 (26%), Positives = 19/57 (33%)

Query: 103 FRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           + P    +  A A   A  +S    AP     A P P PP       PP P   +  
Sbjct: 36  YGPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAA 92

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 47.6 bits (113), Expect = 1e-05
 Identities = 23/77 (29%), Positives = 25/77 (32%), Gaps = 8/77 (10%)

Query: 104  RPPPKPSGGAPAGTNANPSSGTPPAPP--------PPPGATPPPPPPPPPGGPPPPPPPP 155
            RP P+PS  A       P +    A P         P G  PP P PP    P PPPP P
Sbjct: 2572 RPAPRPSEPAVTSRARRPDAPPQSARPRAPVDDRGDPRGPAPPSPLPPDTHAPDPPPPSP 2631

Query: 156  GSLPRGVGSGDKVQRAP 172
                            P
Sbjct: 2632 SPAANEPDPHPPPTVPP 2648

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 17/69 (24%), Positives = 22/69 (31%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
             P  +  APA   A  ++    A  P P A P P P P P   PP P            
Sbjct: 397 AAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSP 456

Query: 165 GDKVQRAPE 173
                 + +
Sbjct: 457 PPAAAPSAQ 465

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 47.2 bits (113), Expect = 2e-05
 Identities = 15/69 (21%), Positives = 19/69 (27%)

Query: 106 PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
           P   +    A   A  ++  P A P       P P PP    P  PP P  +        
Sbjct: 38  PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPA 97

Query: 166 DKVQRAPEL 174
                A   
Sbjct: 98  APPAAAAAA 106

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 11/55 (20%), Positives = 16/55 (29%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
             P  +  A A   + P++      P  P   PP    P     P       + P
Sbjct: 42  AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 2e-05
 Identities = 17/84 (20%), Positives = 25/84 (29%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
            P   +  A A  +A  ++    AP  P  A P    P  P  P        +      +
Sbjct: 43  APTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAA 102

Query: 165 GDKVQRAPELVEFYQTLMKREAKK 188
                 A   VE   T ++  A  
Sbjct: 103 AAAAAPAAAAVEDEVTPLRGAAAA 126

Length = 1228

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 44.5 bits (105), Expect = 2e-05
 Identities = 31/59 (52%), Positives = 33/59 (55%), Gaps = 6/59 (10%)

Query: 105 PPPKPSGGAPAGTNANP---SSGTPPAPPPPPGATPPPPPPPPPGG---PPPPPPPPGS 157
           PPP P  GA       P    +G PP PPP PG    PPPPP PGG   PPPPPP PG+
Sbjct: 73  PPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGA 131

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 23/82 (28%), Positives = 27/82 (32%), Gaps = 3/82 (3%)

Query: 97  KRPPRVFRPPPKPSGGAPAGTNANPSSGTP---PAPPPPPGATPPPPPPPPPGGPPPPPP 153
           K P R     P  +  A A     P++       AP  PP A PP P   P    P   P
Sbjct: 379 KTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPAAAAPAAAP 438

Query: 154 PPGSLPRGVGSGDKVQRAPELV 175
                   +      Q APE V
Sbjct: 439 AAAPAAVALAPAPPAQAAPETV 460

Length = 618

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 46.1 bits (109), Expect = 2e-05
 Identities = 16/57 (28%), Positives = 18/57 (31%), Gaps = 4/57 (7%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPP----PPPPGS 157
           P P P   A   T   PS+ T P     P  +     P     P       PP PG 
Sbjct: 208 PRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPAPPTPGG 264

Length = 401

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 12/54 (22%), Positives = 16/54 (29%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
                 +    A   A P++  P APP P  A      P  P        P  +
Sbjct: 58  PAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAA 111

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.4 bits (111), Expect = 3e-05
 Identities = 9/62 (14%), Positives = 12/62 (19%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            P     P    +  A A +    +        P P       P  PP            
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAP 96

Query: 158 LP 159
             
Sbjct: 97  AA 98

Length = 1228

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 28/82 (34%), Positives = 34/82 (41%), Gaps = 7/82 (8%)

Query: 98   RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPP-------PGGPPP 150
            RP        + S  +P      P++   PA   PP A+P  P PPP       P  PP 
Sbjct: 2785 RPAVASLSESRESLPSPWDPADPPAAVLAPAAALPPAASPAGPLPPPTSAQPTAPPPPPG 2844

Query: 151  PPPPPGSLPRGVGSGDKVQRAP 172
            PPPP   L   V  G  V+R P
Sbjct: 2845 PPPPSLPLGGSVAPGGDVRRRP 2866

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.7 bits (109), Expect = 4e-05
 Identities = 21/75 (28%), Positives = 25/75 (33%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
             P     P      APA  +   ++    AP PPP A P   P P P   P P   P  
Sbjct: 423 PAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAAPAP 482

Query: 158 LPRGVGSGDKVQRAP 172
            P    +      AP
Sbjct: 483 APPAAPAPAAAPAAP 497

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.9 bits (109), Expect = 4e-05
 Identities = 23/101 (22%), Positives = 32/101 (31%)

Query: 65  KPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSG 124
               +G       +  A ES++      S +    P     P  P   +P      P   
Sbjct: 65  FEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDPPPPTPPPA 124

Query: 125 TPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
           +PP  P P  +    P   P   P   PP  G+ P  V S 
Sbjct: 125 SPPPSPAPDLSEMLRPVGSPGPPPAASPPAAGASPAAVASD 165

Length = 1352

>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 4e-05
 Identities = 16/60 (26%), Positives = 19/60 (31%), Gaps = 2/60 (3%)

Query: 95  IEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPP 154
           +E+  P            A     A P +  PP PP  P       P P P  P    PP
Sbjct: 377 LERGAPAPPSAAWGAPTPAAPA--APPPAAAPPVPPAAPARPAAARPAPAPAPPAAAAPP 434

Length = 576

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 12/70 (17%), Positives = 16/70 (22%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
                P+        A  ++  P     P  A  P P P PP      P      P    
Sbjct: 401 AAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAA 460

Query: 164 SGDKVQRAPE 173
           +         
Sbjct: 461 APSAQPAPAP 470

Length = 824

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 43.0 bits (101), Expect = 5e-05
 Identities = 28/56 (50%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGG---PPPPPPPPGS 157
           PPP P           P +   P PPP PGA   PPPPP PGG   PPPPPP PG 
Sbjct: 51  PPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPPLPGGAGIPPPPPPLPGG 106

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 30/103 (29%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 69  SGDSSDQSHDDRAAESQTISKMKFSQIEKRPP-RVFRPPP------KPSGGAPAGTNANP 121
           + D++ ++   R + S T      S    RPP    RPPP        S  A AG  A  
Sbjct: 808 AADAASRTASKRKSRSHTPDGGSESSGPARPPGAAARPPPARSSESSKSKPAAAGGRARG 867

Query: 122 SSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
            +G     PP P A P    PP      PP   P   PR    
Sbjct: 868 KNGRRRPRPPEPRARPGAAAPPKAAAAAPPAGAPAPRPRPAPR 910

Length = 1352

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 24/115 (20%), Positives = 36/115 (31%), Gaps = 12/115 (10%)

Query: 90  MKFSQI-----EKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPP 144
           ++ +Q+     +    R  +   KP    PA     PS+    +P P   +    P  P 
Sbjct: 357 IQLAQLTQKGDDASGGRGPKQHIKPVFTQPA-AAPQPSAAAAASPSPSQSSAAAQPSAPQ 415

Query: 145 PGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQTLM--KREAKKDTSSLISST 197
               P   PP  S+         V   P             +E KK   S +SS 
Sbjct: 416 SATQPAGTPPTVSVD----PPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSL 466

Length = 614

>gnl|CDD|219321 pfam07174, FAP, Fibronectin-attachment protein (FAP)

 Score = 44.5 bits (105), Expect = 6e-05
 Identities = 23/49 (46%), Positives = 27/49 (55%), Gaps = 4/49 (8%)

Query: 112 GAPAGTNANPS-SGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           GA A   A P+ +   PAPPPPP +T    P P     PPPPPPP + P
Sbjct: 25  GASAVAIALPATANADPAPPPPPPSTAAAAPAPAA---PPPPPPPAAPP 70

This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix. Length = 297

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 21/63 (33%), Positives = 26/63 (41%)

Query: 97   KRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
            + P      P +P     A    + S+ +   PP  P   P P  PPPP   P PPPPP 
Sbjct: 2869 RSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPPPQ 2928

Query: 157  SLP 159
              P
Sbjct: 2929 PQP 2931

Length = 3151

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 16/53 (30%), Positives = 17/53 (32%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           P    S  A +   A P S        P      PPP  PP    P PP   S
Sbjct: 159 PAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPSTPPAAASPRPPRRSS 211

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 45.3 bits (107), Expect = 6e-05
 Identities = 17/62 (27%), Positives = 19/62 (30%)

Query: 103 FRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGV 162
           FRP     G  PA   A P +   PA   P  A P P  PP      P            
Sbjct: 363 FRPGQSGGGAGPATAAAAPVAQPAPAAAAPAAAAPAPAAPPAAPAAAPAAAAAARAVAAA 422

Query: 163 GS 164
            +
Sbjct: 423 PA 424

Length = 700

>gnl|CDD|237802 PRK14723, flhF, flagellar biosynthesis regulator FlhF; Provisional

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 14/46 (30%), Positives = 18/46 (39%)

Query: 114 PAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
                A+  +  PPAP P P A   P P       P   P PG++ 
Sbjct: 48  LGAVAASAQAYAPPAPAPLPAALVAPAPAAASIAAPAAVPAPGAIG 93

Length = 767

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 45.3 bits (107), Expect = 7e-05
 Identities = 23/78 (29%), Positives = 27/78 (34%), Gaps = 2/78 (2%)

Query: 99   PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS- 157
            P RV RP      G  A  ++ P      A  P  G+      PPPP   P P P     
Sbjct: 2658 PGRVSRPRRARRLGRAAQASSPPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVS 2717

Query: 158  -LPRGVGSGDKVQRAPEL 174
              P   G     Q +P L
Sbjct: 2718 ATPLPPGPAAARQASPAL 2735

Length = 3151

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 11/58 (18%), Positives = 12/58 (20%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
                 P  K          A  +   PP P     A   P  PP       P     
Sbjct: 56  SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAV 113

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.8 bits (106), Expect = 7e-05
 Identities = 23/75 (30%), Positives = 25/75 (33%), Gaps = 10/75 (13%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPP-----PPGGPPPPP 152
                  P  + S   P      PSS  PP P PPP + PP P P       P G P PP
Sbjct: 93  STLAPASPAREGSPTPP-----GPSSPDPPPPTPPPASPPPSPAPDLSEMLRPVGSPGPP 147

Query: 153 PPPGSLPRGVGSGDK 167
           P       G      
Sbjct: 148 PAASPPAAGASPAAV 162

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.9 bits (106), Expect = 7e-05
 Identities = 19/72 (26%), Positives = 22/72 (30%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
           R  P P   A A   +    G  PAP P P A P     P   GP P      + P    
Sbjct: 425 RRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAA 484

Query: 164 SGDKVQRAPELV 175
                  A +  
Sbjct: 485 PAAAPAPADDDP 496

Length = 700

>gnl|CDD|152960 pfam12526, DUF3729, Protein of unknown function (DUF3729)

 Score = 41.6 bits (98), Expect = 7e-05
 Identities = 22/59 (37%), Positives = 25/59 (42%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
           RPP V  PPP  +       +   +    P PP P  A PP P  PP     PP PPP 
Sbjct: 47  RPPVVDTPPPVSAVWVLPPPSEPAAPPPDPEPPVPGPAGPPSPLAPPAPARKPPLPPPR 105

This family of proteins is found in viruses. Proteins in this family are typically between 145 and 1707 amino acids in length. The family is found in association with pfam01443, pfam01661, pfam05417, pfam01660, pfam00978. There is a single completely conserved residue L that may be functionally important. Length = 115

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 42.6 bits (100), Expect = 8e-05
 Identities = 29/61 (47%), Positives = 29/61 (47%), Gaps = 6/61 (9%)

Query: 105 PPPKPSG-GAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPP-----PPPGSL 158
           PPP P G   P         G PP PPP PGA   PPPPP  G PPPPP     P    L
Sbjct: 100 PPPLPGGAAVPPPPPLPGGPGVPPPPPPFPGAPGIPPPPPGMGSPPPPPFGFGVPAAPVL 159

Query: 159 P 159
           P
Sbjct: 160 P 160

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 17/58 (29%), Positives = 20/58 (34%), Gaps = 2/58 (3%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAP-PPPPGATPPPPPPPPPGGPPPPPPPP 155
            P   + P +P   APA       +   PAP   P  A   P  PP    P P   P 
Sbjct: 374 APAEKKTPARPEAAAPAAAPV-AQAAAAPAPAAAPAAAASAPAAPPAAAPPAPVAAPA 430

Length = 618

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 44.5 bits (105), Expect = 9e-05
 Identities = 21/70 (30%), Positives = 25/70 (35%), Gaps = 18/70 (25%)

Query: 104 RPPPKPSGGAPAGTNANPSS------------------GTPPAPPPPPGATPPPPPPPPP 145
            PP    G  P  ++  PS+                  G  PA P  P A+ P PP PP 
Sbjct: 189 PPPSSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLPGPSPAQPSAPPASIPAPPIPPV 248

Query: 146 GGPPPPPPPP 155
                PPP P
Sbjct: 249 IQYVAPPPVP 258

Length = 582

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 18/64 (28%), Positives = 21/64 (32%), Gaps = 1/64 (1%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAP-PPPPGATPPPPPPPPPGGPPPPPPPPG 156
           R  R+ R      G       A  ++   PA  P P  A P     P P   P P P P 
Sbjct: 377 RLERLERRLGVAGGAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPA 436

Query: 157 SLPR 160
             P 
Sbjct: 437 PAPA 440

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 44.2 bits (105), Expect = 1e-04
 Identities = 22/91 (24%), Positives = 29/91 (31%), Gaps = 9/91 (9%)

Query: 69  SGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPA 128
           +G +  Q     AA              +      +PP    G +     A+     PP 
Sbjct: 694 AGAAPAQPAPAPAATPPA---------GQADDPAAQPPQAAQGASAPSPAADDPVPLPPE 744

Query: 129 PPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P  PP     P  PPPP  P P   P  + P
Sbjct: 745 PDDPPDPAGAPAQPPPPPAPAPAAAPAAAPP 775

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 20/72 (27%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPP---PPPPPGGPPPPPPPPGSLPRG 161
               P+  AP+   A P++   PA   P  A  P P   P P P   P P PP  +    
Sbjct: 390 GAGAPAAAAPSAAAAAPAAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAP 449

Query: 162 VGSGDKVQRAPE 173
            G       A  
Sbjct: 450 AGGAPSPPPAAA 461

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 17/59 (28%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 103 FRPP--PKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           F+P    + +  A   T A P +  P A P    A  P P   P      P  PP + P
Sbjct: 364 FKPAAAAEAAAPAEKKTPARPEAAAPAAAPVAQAAAAPAPAAAPAAAASAPAAPPAAAP 422

Length = 618

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 21/81 (25%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 96  EKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
           E         P          + A   S TPP P  P    PPP PPP    P P P   
Sbjct: 78  EAPANESRSTPTWSLSTLAPASPAREGSPTPPGPSSPDP--PPPTPPPASPPPSPAPDLS 135

Query: 156 GSLPRGVGSGDKVQRAPELVE 176
             L      G     +P    
Sbjct: 136 EMLRPVGSPGPPPAASPPAAG 156

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 1e-04
 Identities = 21/94 (22%), Positives = 26/94 (27%), Gaps = 1/94 (1%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            P     P P P+  APA      ++G  P       A     P   P      PPP   
Sbjct: 443 GPGGAPAPAPAPAA-APAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEE 501

Query: 158 LPRGVGSGDKVQRAPELVEFYQTLMKREAKKDTS 191
           LP    S    Q       +    +   A  D  
Sbjct: 502 LPPEFASPAPAQPDAAPAGWVAESIPDPATADPD 535

Length = 700

>gnl|CDD|184281 PRK13729, PRK13729, conjugal transfer pilus assembly protein TraB; Provisional

 Score = 44.0 bits (104), Expect = 1e-04
 Identities = 39/152 (25%), Positives = 60/152 (39%), Gaps = 21/152 (13%)

Query: 107 PKPSGGA-PAGTNANPSSGTPPAPPPPPGATPPPPPPP--PPGGPPPPP-------PPPG 156
           P P   A P G    P  G  P   PP G+   PPP    P  G  PPP       P P 
Sbjct: 134 PVPQMPASPPGPEGEPQPGNTPVSFPPQGSVAVPPPTAFYPGNGVTPPPQVTYQSVPVPN 193

Query: 157 SLPRGVGSGDKVQRAPELV-----EFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEI 211
            + R   + ++ ++ P L       F + ++   A  D ++ ++   +T   +  + G +
Sbjct: 194 RIQRKTFTYNEGKKGPSLPYIPSGSFAKAMLIEGA--DANASVTGNESTVPMQLRITGLV 251

Query: 212 E---NKSSFLLAVKADVETQGDFVQSLAAEVR 240
           E   +K+         +E  GD V S  A VR
Sbjct: 252 EMPNSKTYDATGCFVGLEAWGD-VSSERAIVR 282

Length = 475

>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional

 Score = 43.9 bits (104), Expect = 1e-04
 Identities = 30/120 (25%), Positives = 42/120 (35%), Gaps = 9/120 (7%)

Query: 60  ALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEK----RPPRVFRPPPKPSGGAPA 115
            + +++ I   ++   S D RA  S  I+K+   + +      P         P   APA
Sbjct: 71  YVKEDEVICIIETDKVSVDIRAPASGVITKIFAEEGDTVEVGAPLSEIDTGGAPPAAAPA 130

Query: 116 GTNANPSSGTPPAPPPPPGATPPP-----PPPPPPGGPPPPPPPPGSLPRGVGSGDKVQR 170
              A  +  T P  P     TP P     P PP    PP P P     P  V   D  + 
Sbjct: 131 AAAAAKAEKTTPEKPKAAAPTPEPPAASKPTPPAAAKPPEPAPAAKPPPTPVARADPRET 190

Length = 418

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 41.7 bits (98), Expect = 1e-04
 Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 2/68 (2%)

Query: 94  QIEKRPPRVFRP--PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPP 151
            +E+   ++  P  PP P       T  +P+   P  PP    A PP P    P     P
Sbjct: 70  SMEQEARKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTSTPAVPPAPAAAVPAPAAAP 129

Query: 152 PPPPGSLP 159
           PP     P
Sbjct: 130 PPSDPPQP 137

Length = 141

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.8 bits (104), Expect = 1e-04
 Identities = 23/77 (29%), Positives = 27/77 (35%), Gaps = 3/77 (3%)

Query: 83  ESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPP 142
           ESQ+ S    S   K PP   + PP P+   P       +    P PPPP         P
Sbjct: 511 ESQSGSA---SNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAP 567

Query: 143 PPPGGPPPPPPPPGSLP 159
                   PPPP    P
Sbjct: 568 AQIPADSSPPPPIPEEP 584

Length = 620

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 5/66 (7%)

Query: 96   EKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPP-----PGATPPPPPPPPPGGPPP 150
            E  P  +    P P G A A   +      P  P  P     PG    P  PP   GPP 
Sbjct: 2709 EPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPA 2768

Query: 151  PPPPPG 156
            P PP  
Sbjct: 2769 PAPPAA 2774

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.8 bits (103), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 27/67 (40%)

Query: 106  PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
            P  P+  AP    A P++   PA P  P  T  PP P PP  P   PP   + P      
Sbjct: 2733 PALPAAPAPPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLS 2792

Query: 166  DKVQRAP 172
            +  +  P
Sbjct: 2793 ESRESLP 2799

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.8 bits (104), Expect = 2e-04
 Identities = 19/69 (27%), Positives = 22/69 (31%), Gaps = 3/69 (4%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
           P   P+  A A   A   +   PA  P P   P P P PP      P     S P     
Sbjct: 406 PAAAPAPAAAAPAAAAAPA---PAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAP 462

Query: 165 GDKVQRAPE 173
             +   AP 
Sbjct: 463 SAQPAPAPA 471

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 18/65 (27%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 103 FRPPPKPSGGAPAGTNANPSSGTPPA-PPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRG 161
              PP P+   P    A P++   PA P  P  A     P      P P    P   P+ 
Sbjct: 597 GEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKH 656

Query: 162 VGSGD 166
           V   D
Sbjct: 657 VAVPD 661

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 15/78 (19%), Positives = 19/78 (24%), Gaps = 1/78 (1%)

Query: 96  EKRPPRVFRPPPKPSGGAPAGTNANPSSGTP-PAPPPPPGATPPPPPPPPPGGPPPPPPP 154
             +   V        G       A P++  P PAP  P       P  P P     PP  
Sbjct: 653 HPKHVAVPDASDGGDGWPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAG 712

Query: 155 PGSLPRGVGSGDKVQRAP 172
               P           + 
Sbjct: 713 QADDPAAQPPQAAQGASA 730

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 20/102 (19%), Positives = 30/102 (29%)

Query: 65  KPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSG 124
           +P      +  +    A  +   ++   +           P       A  G +  P+  
Sbjct: 614 RPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGGDGWPAKA 673

Query: 125 TPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGD 166
              AP  PP A  P  P  P G  P  P P  +     G  D
Sbjct: 674 GGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQAD 715

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 43.1 bits (102), Expect = 2e-04
 Identities = 16/69 (23%), Positives = 22/69 (31%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
           P P  +GG      A+       A P  P A   P  P P G    P     +   GV +
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 165 GDKVQRAPE 173
            +   +   
Sbjct: 650 PEHHPKHVA 658

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.3 bits (103), Expect = 2e-04
 Identities = 12/54 (22%), Positives = 13/54 (24%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPP 152
           P       P P+  A A   A P      A    P A P       P       
Sbjct: 62  PAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

Length = 1228

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 24/51 (47%), Positives = 24/51 (47%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
           PPP P G         P     P PPP PG    PPPPP PG    PPPPP
Sbjct: 27  PPPLPGGTGIPPPPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPP 77

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 41.1 bits (96), Expect = 2e-04
 Identities = 31/59 (52%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
           PPP P G A       P     P PPP PGAT  PPPPP PG    PPPPP  LP G G
Sbjct: 39  PPPLPGGAAIPPPPPLPGVAGIPPPPPLPGATAIPPPPPLPGAAGIPPPPP--LPGGAG 95

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|218621 pfam05518, Totivirus_coat, Totivirus coat protein

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 5/60 (8%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
            P + + G P    A+ ++    AP  P    P  PP    G PPPP  P  + P   GS
Sbjct: 673 RPSRVARGDPVRPTAHHAA--LRAPQAP---RPGGPPGGGGGLPPPPDLPAAAGPAPCGS 727

Length = 753

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 14/68 (20%), Positives = 18/68 (26%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
               PS    +          P  P  P  ++ PP P       PPP P   + P     
Sbjct: 180 ASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPG 239

Query: 165 GDKVQRAP 172
                  P
Sbjct: 240 PAAPPPPP 247

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 19/65 (29%), Positives = 20/65 (30%)

Query: 96  EKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
           E+ PP    P P     APAG  A        A P     T  P P   P         P
Sbjct: 500 EELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFETLAPAPAAAPAPRAAAATEP 559

Query: 156 GSLPR 160
              PR
Sbjct: 560 VVAPR 564

Length = 700

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 43.4 bits (103), Expect = 2e-04
 Identities = 26/100 (26%), Positives = 36/100 (36%), Gaps = 6/100 (6%)

Query: 116 GTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELV 175
           G+ +N +   PP    PP   P PP P P    PPP PPP        S +   + P   
Sbjct: 515 GSASNTAKTPPPPQKSPPPPAPTPPLPQPTATAPPPTPPPPPPTATQASSNAPAQIPADS 574

Query: 176 EFYQTLMKREAKKDTSSLISSTSNTSDARSNMI----GEI 211
                + +      + +  SS      A  N+     GEI
Sbjct: 575 SPPPPIPEEPTP--SPTKDSSPEEIDKAAKNLADFFNGEI 612

Length = 620

>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein (LMP2) protein

 Score = 43.3 bits (102), Expect = 2e-04
 Identities = 18/73 (24%), Positives = 23/73 (31%), Gaps = 4/73 (5%)

Query: 93  SQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPP 152
             +E +P          S G P G   + S+   P+        P PP P     P   P
Sbjct: 2   VSLEMQP---LGAGGPRSHGGPDGDEGD-SNPYYPSSFGSSWDRPGPPVPEDYDAPSHRP 57

Query: 153 PPPGSLPRGVGSG 165
           PP G        G
Sbjct: 58  PPYGGSNGDRHGG 70

This family consists of several Gammaherpesvirus latent membrane protein (LMP2) proteins. Epstein-Barr virus is a human Gammaherpesvirus that infects and establishes latency in B lymphocytes in vivo. The latent membrane protein 2 (LMP2) gene is expressed in latently infected B cells and encodes two protein isoforms, LMP2A and LMP2B, that are identical except for an additional N-terminal 119 aa cytoplasmic domain which is present in the LMP2A isoform. LMP2A is thought to play a key role in either the establishment or the maintenance of latency and/or the reactivation of productive infection from the latent state. The significance of LMP2B and its role in pathogenesis remain unclear. Length = 489

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 40.1 bits (94), Expect = 2e-04
 Identities = 21/67 (31%), Positives = 22/67 (32%), Gaps = 10/67 (14%)

Query: 103 FRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPP----PPPPPGGPP------PPP 152
              PP  +        A      PP   PPP   P PP     PPPP          PPP
Sbjct: 45  GYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPPNSGYMADPQEPPP 104

Query: 153 PPPGSLP 159
           P PG   
Sbjct: 105 PYPGPPQ 111

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 3e-04
 Identities = 21/69 (30%), Positives = 24/69 (34%), Gaps = 6/69 (8%)

Query: 97  KRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPP--PPPGGPPP---- 150
           +       P  +  GG      A P   + P P P P     PPPP  P P   P     
Sbjct: 386 RSARHAATPFARGPGGDDQTRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDG 445

Query: 151 PPPPPGSLP 159
           P PPP   P
Sbjct: 446 PAPPPERQP 454

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 14/69 (20%), Positives = 18/69 (26%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
                +  APA   A   +  P   P PP      P    P  PP   P     P    +
Sbjct: 414 AAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAA 473

Query: 165 GDKVQRAPE 173
            +       
Sbjct: 474 PEPTAAPAP 482

Length = 824

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 13/68 (19%), Positives = 14/68 (20%), Gaps = 1/68 (1%)

Query: 96  EKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
                      P     AP    A  +   P A      A   PP       P       
Sbjct: 56  SAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVED 115

Query: 156 GSLP-RGV 162
              P RG 
Sbjct: 116 EVTPLRGA 123

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 43.0 bits (102), Expect = 3e-04
 Identities = 11/53 (20%), Positives = 17/53 (32%)

Query: 112 GAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
           G  +      ++    A    P A P    P  P   PP    P + P+   +
Sbjct: 37  GPGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAA 89

Length = 1228

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 18/74 (24%), Positives = 21/74 (28%)

Query: 87  ISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPG 146
              ++       PP    P    S  A A   A+      P   P   A  P  PP  P 
Sbjct: 135 SEMLRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPP 194

Query: 147 GPPPPPPPPGSLPR 160
              PP       PR
Sbjct: 195 PSTPPAAASPRPPR 208

Length = 1352

>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183)

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 21/68 (30%), Positives = 25/68 (36%), Gaps = 5/68 (7%)

Query: 103 FRPPPKP-----SGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            R  P+P      GG   G       G+ P PPPP   +  PPP  P  GP       G+
Sbjct: 183 VRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYGPGAGPSSGYGSGGT 242

Query: 158 LPRGVGSG 165
                G G
Sbjct: 243 RSGQGGWG 250

This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown. Length = 317

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 43.0 bits (101), Expect = 4e-04
 Identities = 25/83 (30%), Positives = 28/83 (33%), Gaps = 12/83 (14%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPG------------GPPPPP 152
           P P P  G  A      + G    PPPP  A P     PP G             P PP 
Sbjct: 255 PAPPPVVGEGADRAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAPPD 314

Query: 153 PPPGSLPRGVGSGDKVQRAPELV 175
           PPP +        D    A E+V
Sbjct: 315 PPPPAPAGDAEEEDDEDGAMEVV 337

Length = 3151

>gnl|CDD|148139 pfam06346, Drf_FH1, Formin Homology Region 1

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 29/59 (49%), Positives = 29/59 (49%), Gaps = 2/59 (3%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
           PPP P G         P     P PPP PG T  PPPPP PGG   PPPPP  LP   G
Sbjct: 3   PPPLPGGVGIPPPPPLPGGVCIPPPPPLPGGTGIPPPPPLPGGAAIPPPPP--LPGVAG 59

This region is found in some of the Diaphanous related formins (Drfs). It consists of low complexity repeats of around 12 residues. Length = 160

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.5 bits (100), Expect = 4e-04
 Identities = 15/52 (28%), Positives = 19/52 (36%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
            P P+P+    A  +    +  P   P    A   PP  P      PPP PP
Sbjct: 363 VPAPQPAKPTAAAPSPVRPTPAPSTRPKAAAAANIPPKEPVRETATPPPVPP 414

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 19/80 (23%), Positives = 23/80 (28%), Gaps = 6/80 (7%)

Query: 106 PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPP------PPPPPPPGGPPPPPPPPGSLP 159
           P + +  A A  +  PSS       P P   P        PP P       PPP P S  
Sbjct: 173 PGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPT 232

Query: 160 RGVGSGDKVQRAPELVEFYQ 179
                       P  V+   
Sbjct: 233 NPSPPPGPAAPPPPPVQQVP 252

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional

 Score = 42.3 bits (100), Expect = 4e-04
 Identities = 16/33 (48%), Positives = 16/33 (48%)

Query: 127 PAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           PAPP PP   PPPPPPPP     PP        
Sbjct: 259 PAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDD 291

Length = 584

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 42.2 bits (99), Expect = 4e-04
 Identities = 13/35 (37%), Positives = 14/35 (40%)

Query: 126 PPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
            PAPP P  A  PPPP            P  + PR
Sbjct: 18  APAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPR 52

Length = 475

>gnl|CDD|114709 pfam06003, SMN, Survival motor neuron protein (SMN)

 Score = 41.5 bits (97), Expect = 4e-04
 Identities = 28/95 (29%), Positives = 30/95 (31%), Gaps = 9/95 (9%)

Query: 63  KEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPS 122
            E    + +S   SH               S    R P    PPP P G    G      
Sbjct: 136 NETESSTDESDRSSHSHEVRSKSNFPMGPPSPWNPRFPPG--PPPPPPGFGRHG------ 187

Query: 123 SGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
                 PP   G  PPP P  PP  PPPPP  P  
Sbjct: 188 EKPSGWPPFLSG-WPPPFPLGPPMIPPPPPMSPDF 221

This family consists of several eukaryotic survival motor neuron (SMN) proteins. The Survival of Motor Neurons (SMN) protein, the product of the spinal muscular atrophy-determining gene, is part of a large macromolecular complex (SMN complex) that functions in the assembly of spliceosomal small nuclear ribonucleoproteins (snRNPs). The SMN complex functions as a specificity factor essential for the efficient assembly of Sm proteins on U snRNAs and likely protects cells from illicit, and potentially deleterious, non-specific binding of Sm proteins to RNAs. Length = 264

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 42.3 bits (100), Expect = 5e-04
 Identities = 16/68 (23%), Positives = 19/68 (27%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
            P   +  A A      +    PAP P P    P    P  G P PPP    S       
Sbjct: 411 APAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAP 470

Query: 165 GDKVQRAP 172
               +   
Sbjct: 471 AAAPEPTA 478

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 20/76 (26%), Positives = 24/76 (31%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            P +     P     APA       +G  PA P P  A  PP          PP    G+
Sbjct: 669 WPAKAGGAAPAAPPPAPAPAAPAAPAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGA 728

Query: 158 LPRGVGSGDKVQRAPE 173
                 + D V   PE
Sbjct: 729 SAPSPAADDPVPLPPE 744

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 10/64 (15%), Positives = 12/64 (18%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            P          +  A       P +   P     P    P P        P   P    
Sbjct: 428 APAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAAPAPAAAPAAAR 487

Query: 158 LPRG 161
           L   
Sbjct: 488 LTPT 491

Length = 618

>gnl|CDD|166942 PRK00404, tatB, sec-independent translocase; Provisional

 Score = 39.8 bits (93), Expect = 5e-04
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 2/90 (2%)

Query: 64  EKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSS 123
           E+ I + +   Q H++     +  ++   + +    P     PP     APA     P+S
Sbjct: 51  EREIGADEIRRQLHNEHILSMEQEARKILAPLTPPAPPEPVTPPTAQSPAPAVPTPPPTS 110

Query: 124 GTPPAPPPPPGATPPPPPPPPPGGPPPPPP 153
              PA PP P A  P P   PP   PP PP
Sbjct: 111 T--PAVPPAPAAAVPAPAAAPPPSDPPQPP 138

Length = 141

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 17/62 (27%), Positives = 19/62 (30%)

Query: 99   PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            P R     P      P    A P+          P   P  PP P    PP P P P   
Sbjct: 2867 PSRSPAAKPAAPARPPVRRLARPAVSRSTESFALPPDQPERPPQPQAPPPPQPQPQPPPP 2926

Query: 159  PR 160
            P+
Sbjct: 2927 PQ 2928

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 42.2 bits (99), Expect = 6e-04
 Identities = 16/53 (30%), Positives = 20/53 (37%)

Query: 107 PKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
            +P+   PA       +  P + PPPP    P   P    GP PPP      P
Sbjct: 405 TRPAAPVPASVPTPAPTPVPASAPPPPATPLPSAEPGSDDGPAPPPERQPPAP 457

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.9 bits (99), Expect = 6e-04
 Identities = 20/81 (24%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPP-----PGGPPPPP 152
             P        P+G A       P +    + P P    P P PP P     P G P  P
Sbjct: 699 AQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQP 758

Query: 153 PPPGSLPRGVGSGDKVQRAPE 173
           PPP +             +P 
Sbjct: 759 PPPPAPAPAAAPAAAPPPSPP 779

Length = 824

>gnl|CDD|217469 pfam03276, Gag_spuma, Spumavirus gag protein

 Score = 41.8 bits (98), Expect = 6e-04
 Identities = 28/77 (36%), Positives = 34/77 (44%), Gaps = 3/77 (3%)

Query: 75  QSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPG 134
            S       S +++    S    R PRV   P  P G +PA  +A P+S   PAPP PP 
Sbjct: 192 SSLPGLPPGSSSLAPSASSTPGNRLPRVSFNPFLP-GPSPAQPSAPPAS--IPAPPIPPV 248

Query: 135 ATPPPPPPPPPGGPPPP 151
                PPP PP  P  P
Sbjct: 249 IQYVAPPPVPPPQPIIP 265

Length = 582

>gnl|CDD|236940 PRK11633, PRK11633, cell division protein DedD; Provisional

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 17/51 (33%), Positives = 18/51 (35%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
           PP   +    AG  A PS       PP     P P P  PP   P   P P
Sbjct: 67  PPEGAAEAVRAGDAAAPSLDPATVAPPNTPVEPEPAPVEPPKPKPVEKPKP 117

Length = 226

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.8 bits (99), Expect = 6e-04
 Identities = 18/53 (33%), Positives = 21/53 (39%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           P   P   APA +    ++ T    PP   A PPPP   P   P  P P   S
Sbjct: 368 PEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Length = 647

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 7e-04
 Identities = 22/62 (35%), Positives = 24/62 (38%), Gaps = 10/62 (16%)

Query: 104  RPPPKPSGGAPAGTNANPSSGTPPAPP------PPPGATPPPPPPPP----PGGPPPPPP 153
             PPP P    PA      ++  PP P       P   A P PP  P     PGGP  P  
Sbjct: 2700 DPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAAPAPPAVPAGPATPGGPARPAR 2759

Query: 154  PP 155
            PP
Sbjct: 2760 PP 2761

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 20/76 (26%), Positives = 22/76 (28%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            PP      P       A   + PS       P PP    PP P   P  PPPPP P  +
Sbjct: 708 TPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDPAGAPAQPPPPPAPAPA 767

Query: 158 LPRGVGSGDKVQRAPE 173
                          E
Sbjct: 768 AAPAAAPPPSPPSEEE 783

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 8e-04
 Identities = 16/75 (21%), Positives = 18/75 (24%), Gaps = 3/75 (4%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            PP      P      PA   A  +   P AP P   A  P      P      P     
Sbjct: 599 GPPAPASSGPPEEAARPA---APAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPK 655

Query: 158 LPRGVGSGDKVQRAP 172
                 + D     P
Sbjct: 656 HVAVPDASDGGDGWP 670

Length = 824

>gnl|CDD|223033 PHA03291, PHA03291, envelope glycoprotein I; Provisional

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 14/54 (25%), Positives = 17/54 (31%), Gaps = 1/54 (1%)

Query: 114 PAGTNANPSSGTPP-APPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGD 166
           PA     P +   P   P P   T PP    P        P  G+ P   G+  
Sbjct: 205 PATPRPTPRTTASPETTPTPSTTTSPPSTTIPAPSTTIAAPQAGTTPEAEGTPA 258

Length = 401

>gnl|CDD|234938 PRK01297, PRK01297, ATP-dependent RNA helicase RhlB; Provisional

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 11/49 (22%), Positives = 12/49 (24%)

Query: 112 GAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
                      +  P  PPP   A P      P    P    P    PR
Sbjct: 14  AEQPAPAPPSPAAAPAPPPPAKTAAPATKAAAPAAAAPRAEKPKKDKPR 62

Length = 475

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.8 bits (98), Expect = 9e-04
 Identities = 18/76 (23%), Positives = 22/76 (28%), Gaps = 2/76 (2%)

Query: 99   PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATP--PPPPPPPPGGPPPPPPPPG 156
            PP+  R            + A+P    P   P P       P PP P       P  P  
Sbjct: 2679 PPQRPRRRAARPTVGSLTSLADPPPPPPTPEPAPHALVSATPLPPGPAAARQASPALPAA 2738

Query: 157  SLPRGVGSGDKVQRAP 172
              P  V +G      P
Sbjct: 2739 PAPPAVPAGPATPGGP 2754

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.5 bits (98), Expect = 9e-04
 Identities = 16/76 (21%), Positives = 19/76 (25%), Gaps = 1/76 (1%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            P    RP    +  APA       +   PA      A     P   P     P    G 
Sbjct: 608 PPEEAARPAAPAAPAAPAAPAP-AGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASDGG 666

Query: 158 LPRGVGSGDKVQRAPE 173
                 +G     AP 
Sbjct: 667 DGWPAKAGGAAPAAPP 682

Length = 824

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 40.8 bits (96), Expect = 9e-04
 Identities = 25/68 (36%), Positives = 29/68 (42%), Gaps = 2/68 (2%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPP--PPPPGGPPPPPPPPG 156
            P     PP PS         +P S T P+PPP P A PPPP    PP     P PP   
Sbjct: 206 SPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAKPTPPSAS 265

Query: 157 SLPRGVGS 164
           + P  +G 
Sbjct: 266 ATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|219133 pfam06682, DUF1183, Protein of unknown function (DUF1183)

 Score = 40.9 bits (96), Expect = 9e-04
 Identities = 20/65 (30%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 102 VFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP-R 160
            F       GG           G         G + P PPPP      PPP  PG+ P  
Sbjct: 176 FFLSCGGVRGGPRPERAGYGGGGGGGGGGGGGGGSGPGPPPPGFKSSFPPPYGPGAGPSS 235

Query: 161 GVGSG 165
           G GSG
Sbjct: 236 GYGSG 240

This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown. Length = 317

>gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.2 bits (96), Expect = 9e-04
 Identities = 27/76 (35%), Positives = 29/76 (38%), Gaps = 10/76 (13%)

Query: 105 PPP---KPSGGAPAGTNANPSSGTPPAPPPPPGATPP------PPPPPPPGGPPPPPPPP 155
           P P    P G APA     PSS  P  P P    +P       PP PP  G PP P P  
Sbjct: 398 PTPGTQGPQGTAPA-AGMTPSSAAPATPAPSAAPSPRVPWDDAPPAPPRSGIPPRPAPRM 456

Query: 156 GSLPRGVGSGDKVQRA 171
                  G+ D V  A
Sbjct: 457 PEASPVPGAPDSVASA 472

Length = 624

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 28/107 (26%), Positives = 35/107 (32%), Gaps = 5/107 (4%)

Query: 99   PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            PP     PP+P    P           PP PP P    PPPP P PP  P   P   G  
Sbjct: 2901 PPDQPERPPQPQAPPPPQPQP-----QPPPPPQPQPPPPPPPRPQPPLAPTTDPAGAGEP 2955

Query: 159  PRGVGSGDKVQRAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARS 205
               V         P  V   +  + + A    +   S+   T  + S
Sbjct: 2956 SGAVPQPWLGALVPGRVAVPRFRVPQPAPSREAPASSTPPLTGHSLS 3002

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 14/60 (23%), Positives = 15/60 (25%)

Query: 113 APAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAP 172
            PA   A       PA   PP     P  P  P  P  P P   +      S        
Sbjct: 589 GPAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVA 648

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.1 bits (97), Expect = 0.001
 Identities = 22/86 (25%), Positives = 28/86 (32%)

Query: 70  GDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAP 129
             +         A + T    +      +PP+  +    PS  A       P    PP P
Sbjct: 692 APAGAAPAQPAPAPAATPPAGQADDPAAQPPQAAQGASAPSPAADDPVPLPPEPDDPPDP 751

Query: 130 PPPPGATPPPPPPPPPGGPPPPPPPP 155
              P   PPPP P P   P   PPP 
Sbjct: 752 AGAPAQPPPPPAPAPAAAPAAAPPPS 777

Length = 824

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 13/59 (22%), Positives = 20/59 (33%)

Query: 107 PKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
                 + + ++++ SS      P P  +  P P  PPP   P  P       R   S 
Sbjct: 320 SSRESSSSSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSP 378

Length = 1352

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 41.0 bits (96), Expect = 0.001
 Identities = 17/100 (17%), Positives = 26/100 (26%)

Query: 106 PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
             +  GGAPA   A  ++    A P   G  P             P   P          
Sbjct: 440 SARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPW 499

Query: 166 DKVQRAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARS 205
           +++          Q           S    +T++  DA  
Sbjct: 500 EELPPEFASPAPAQPDAAPAGWVAESIPDPATADPDDAFE 539

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 11/63 (17%), Positives = 15/63 (23%), Gaps = 1/63 (1%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAP-PPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           P        + +     G    P+     AP      A   P P        P    P +
Sbjct: 428 PAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPAAAGPRPVAAAAAAAPARAAPAA 487

Query: 158 LPR 160
            P 
Sbjct: 488 APA 490

Length = 700

>gnl|CDD|220708 pfam10349, WWbp, WW-domain ligand protein

 Score = 38.2 bits (89), Expect = 0.001
 Identities = 12/55 (21%), Positives = 15/55 (27%)

Query: 107 PKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRG 161
            +P            +       P       PPP  PPP   P PP    + P  
Sbjct: 37  AQPVSRESGYYPPPGAYVHLEPLPAYGQYAAPPPYGPPPPYYPAPPGVYPTPPPP 91

The WWbp domain is characterized by several short PY and PT-like motifs of the PPPPY form. These appear to bind directly to the WW domains of WWP1 and WWP2 and other such diverse proteins as dystrophin and YAP (Yes-associated protein). This is the WW-domain binding protein WWbp via PY and PY_like motifs. The presence of a phosphotyrosine residue in the pWBP-1 peptide abolishes WW domain binding which suggests a potential regulatory role for tyrosine phosphorylation in modulating WW domain-ligand interactions. Given the likelihood that WWP1 and WWP2 function as E3 ubiquitin-protein ligases, it is possible that initial substrate-specific recognition occurs via WW domain-substrate protein interaction followed by ubiquitin transfer and subsequent proteolysis. This domain lies just downstream of the GRAM (pfam02893) in many members. Length = 111

>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated

 Score = 41.0 bits (97), Expect = 0.001
 Identities = 15/86 (17%), Positives = 23/86 (26%), Gaps = 5/86 (5%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPP---PPGGPPPPPPPPGSLPRG 161
            P    GG P G  A  +     AP     A     P                P +    
Sbjct: 393 SPGGGGGGPPGGGGAPGAPAAAAAPGAAAAAPAAGGPAAALAAVPDAAAAAAAPPAPAAA 452

Query: 162 VGSGDKVQRAPELVEFYQTLMKREAK 187
                ++    ++V   +   KR+ K
Sbjct: 453 PQPAVRLNSFEDIVALAEE--KRDIK 476

Length = 598

>gnl|CDD|221480 pfam12238, MSA-2c, Merozoite surface antigen 2c

 Score = 39.8 bits (93), Expect = 0.001
 Identities = 21/74 (28%), Positives = 26/74 (35%), Gaps = 12/74 (16%)

Query: 91  KFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPP 150
            +  + K P   + P              + S GT    P    ATP    PP PG P  
Sbjct: 130 TYELVVKAPAEYYSPKH------------SSSQGTSTTRPSDGSATPNTSAPPTPGNPAA 177

Query: 151 PPPPPGSLPRGVGS 164
            P  P   P+G GS
Sbjct: 178 QPEKPAETPKGNGS 191

This family of proteins is found in eukaryotes. Proteins in this family are typically between 263 and 318 amino acids in length. There is a conserved SFT sequence motif. MSA-2 is a plasma membrane glycoprotein which can be found in Babesia bovis species. Length = 201

>gnl|CDD|216368 pfam01213, CAP_N, Adenylate cyclase associated (CAP) N terminal

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 2/37 (5%)

Query: 121 PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           P +    A P    + P  PPPPPP  PPPP  P  S
Sbjct: 214 PVAAAKSALPAVSSSAPSAPPPPPP--PPPPSVPTIS 248

Length = 313

>gnl|CDD|220309 pfam09606, Med15, ARC105 or Med15 subunit of Mediator complex non-fungal

 Score = 41.1 bits (96), Expect = 0.001
 Identities = 14/57 (24%), Positives = 18/57 (31%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
             +    PP+PS  +P G  + P         P P A  P P P     P       
Sbjct: 422 TNQSMPQPPQPSVPSPGGPGSQPPQSVSGGMIPSPPALMPSPSPQMSQSPASQRTIQ 478

The approx. 70 residue Med15 domain of the ARC-Mediator co-activator is a three-helix bundle with marked similarity to the KIX domain. The sterol regulatory element binding protein (SREBP) family of transcription activators use the ARC105 subunit to activate target genes in the regulation of cholesterol and fatty acid homeostasis. In addition, Med15 is a critical transducer of gene activation signals that control early metazoan development. Length = 768

>gnl|CDD|182059 PRK09752, PRK09752, adhesin; Provisional

 Score = 41.2 bits (96), Expect = 0.001
 Identities = 17/35 (48%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 125 TPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           TPP+PP  P  TP P P P P   P P P P   P
Sbjct: 919 TPPSPPD-PDPTPDPDPTPDPDPTPDPEPTPAYQP 952

Length = 1250

>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase

 Score = 40.8 bits (95), Expect = 0.001
 Identities = 15/51 (29%), Positives = 16/51 (31%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
           P       APA + A       PA   P  A  PP P P P     P    
Sbjct: 207 PAEPAEEEAPAPSEAGSEPAPDPAARAPHAAPDPPAPAPAPAKTAAPAAAA 257

This model represents an Actinobacterial clade of E2 enzyme, a component of the 2-oxoglutarate dehydrogenase complex involved in the TCA cycle. These proteins have multiple domains including the catalytic domain (pfam00198), one or two biotin domains (pfam00364) and an E3-component binding domain (pfam02817). Length = 579

>gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.6 bits (95), Expect = 0.001
 Identities = 16/46 (34%), Positives = 16/46 (34%), Gaps = 4/46 (8%)

Query: 112 GAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
             PA    N     P A P P  A P P   P P   P   P P S
Sbjct: 386 SIPANLLHNA----PQAAPAPSAAAPEPKHQPAPEPRPVLAPTPAS 427

Length = 584

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 38.7 bits (90), Expect = 0.001
 Identities = 26/79 (32%), Positives = 29/79 (36%), Gaps = 2/79 (2%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPP--PPGATPPPPPPPPPGGPPPPPPPPG 156
            P    PP       P      P  G+ P PPP   PG  P   PPPP   PPP   P  
Sbjct: 57  TPYPPSPPVSDPRYYPNSNYFPPPPGSTPVPPPGPQPGYNPADYPPPPGAVPPPQNYPYP 116

Query: 157 SLPRGVGSGDKVQRAPELV 175
             P       + +RA E V
Sbjct: 117 PGPGQDPYAPRPRRADENV 135

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.7 bits (95), Expect = 0.002
 Identities = 17/62 (27%), Positives = 18/62 (29%)

Query: 99   PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            PP V   P  P G A        +    PAPP  P A PP     P              
Sbjct: 2741 PPAVPAGPATPGGPARPARPPTTAGPPAPAPPAAPAAGPPRRLTRPAVASLSESRESLPS 2800

Query: 159  PR 160
            P 
Sbjct: 2801 PW 2802

Length = 3151

>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 24/62 (38%), Positives = 25/62 (40%), Gaps = 15/62 (24%)

Query: 98  RPPRVFR----PPPKPSGGAPAGTNANPS-------SGTPPAPPPPPGATPPPPPPPPPG 146
           R P   R    PPP P   AP G  A P        +G P A P P    P PPPP P G
Sbjct: 267 RAPETARGATGPPPPPEAAAPNGAAAPPDGVWGAALAGAPLALPAP----PDPPPPAPAG 322

Query: 147 GP 148
             
Sbjct: 323 DA 324

Length = 3151

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 15/75 (20%), Positives = 18/75 (24%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
                    +P+  A     A P+     A P    A P P    P   P     P  S 
Sbjct: 605 SSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAAPEHHPKHVAVPDASD 664

Query: 159 PRGVGSGDKVQRAPE 173
                       AP 
Sbjct: 665 GGDGWPAKAGGAAPA 679

Length = 824

>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.002
 Identities = 15/65 (23%), Positives = 17/65 (26%), Gaps = 15/65 (23%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGP--------------PP 150
            P   +            + TPP  PP P   PP P  P                    P
Sbjct: 388 RPKAAAAANIPPKEPVRETATPPPVPPRP-VAPPVPHTPESAPKLTRAAIPVDEKPKYTP 446

Query: 151 PPPPP 155
           P PP 
Sbjct: 447 PAPPK 451

Length = 585

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 14/77 (18%), Positives = 17/77 (22%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
                   G  A   +   S  P + P  P    PP  P  P     PP P         
Sbjct: 166 TNSDNSFPGEDADPASASPSDPPSSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPP 225

Query: 164 SGDKVQRAPELVEFYQT 180
              +    P        
Sbjct: 226 PSPESPTNPSPPPGPAA 242

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 17/59 (28%), Positives = 20/59 (33%)

Query: 107 PKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
              S  + +   A  S G  P+  P P   PPP  P  P   P P   P S     G  
Sbjct: 327 SSTSSSSESSRGAAVSPGPSPSRSPSPSRPPPPADPSSPRKRPRPSRAPSSPAASAGRP 385

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.5 bits (95), Expect = 0.002
 Identities = 28/89 (31%), Positives = 36/89 (40%), Gaps = 2/89 (2%)

Query: 73  SDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPS--SGTPPAPP 130
           S       +AE   ++ +  +    R      PPP P   APA  + +    S +  AP 
Sbjct: 39  SQGQLVSDSAELAAVTVVAGAAACDRFEPPTGPPPGPGTEAPANESRSTPTWSLSTLAPA 98

Query: 131 PPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
            P     P PP P    PPPP PPP S P
Sbjct: 99  SPAREGSPTPPGPSSPDPPPPTPPPASPP 127

Length = 1352

>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional

 Score = 40.2 bits (94), Expect = 0.002
 Identities = 20/107 (18%), Positives = 34/107 (31%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
              V  P P P+   PA   +  +  +  A           P         PP  PP S 
Sbjct: 138 LRPVGSPGPPPAASPPAAGASPAAVASDAASSRQAALPLSSPEETARAPSSPPAEPPPST 197

Query: 159 PRGVGSGDKVQRAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARS 205
           P    S    +R+  +     +      +       +S+S++S + S
Sbjct: 198 PPAAASPRPPRRSSPISASASSPAPAPGRSAADDAGASSSDSSSSES 244

Length = 1352

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 19/77 (24%), Positives = 31/77 (40%)

Query: 100 PRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P    P P+    + A   +  ++  P A   PP A   PPPP       P  P P +  
Sbjct: 361 PAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPETTS 420

Query: 160 RGVGSGDKVQRAPELVE 176
           + + +  ++QRA    +
Sbjct: 421 QLLAARQQLQRAQGATK 437

Length = 647

>gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated

 Score = 40.2 bits (95), Expect = 0.002
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 6/63 (9%)

Query: 103 FRP------PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
           F P      P  P   A    +A  ++    A  PP     PPPP   P   P  P P  
Sbjct: 359 FHPAAPLPEPEVPPQSAAPAASAQATAAPTAAVAPPQAPAVPPPPASAPQQAPAVPLPET 418

Query: 157 SLP 159
           +  
Sbjct: 419 TSQ 421

Length = 647

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 16/50 (32%), Positives = 17/50 (34%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPP 154
            P +            P     P PP  P    PP PP PP  P  P PP
Sbjct: 94  QPAQQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPP 143

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.6 bits (90), Expect = 0.002
 Identities = 15/39 (38%), Positives = 15/39 (38%)

Query: 121 PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P     P  P PP    PP PP PP  P  P  P   L 
Sbjct: 107 PPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPMQPLPPLL 145

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|197891 smart00818, Amelogenin, Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth

 Score = 38.2 bits (89), Expect = 0.002
 Identities = 15/42 (35%), Positives = 15/42 (35%)

Query: 119 ANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
             P    P  PP P     P PP  P    PP PP P   P 
Sbjct: 97  QQPFQPQPLQPPQPQQPMQPQPPVHPIPPLPPQPPLPPMFPM 138

They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions with Ca2+ ions. Muatations in the human amelogenin gene (AMGX) cause X-linked hypoplastic amelogenesis imperfecta, a disease characterised by defective enamel. A 9bp deletion in exon 2 of AMGX results in the loss of codons for Ile5, Leu6, Phe7 and Ala8, and replacement by a new threonine codon, disrupting the 16-residue (Met1-Ala16) amelogenin signal peptide. Length = 165

>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 14/55 (25%), Positives = 17/55 (30%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           PP      AP  T + P+S        P  A     P         P  P  S+P
Sbjct: 86  PPAATPTSAPTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVP 140

All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 378

>gnl|CDD|218881 pfam06070, Herpes_UL32, Herpesvirus large structural phosphoprotein UL32

 Score = 40.3 bits (94), Expect = 0.002
 Identities = 16/120 (13%), Positives = 29/120 (24%), Gaps = 8/120 (6%)

Query: 51  KHPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPP--RVFRPPPK 108
               L P++  + + P        +     A    +++    +   +  P    F     
Sbjct: 522 SIKELRPRIGFINKSPPPKSPPKSRRTLIVAL---SLASPSTAGSPRPKPSLGKFVIGTD 578

Query: 109 PSGGAPAGTNANPSSGTPPAPP---PPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
           P   A      +   G         P   A+  P   P     P            VG+ 
Sbjct: 579 PFAFANTVRLTDNMRGGNGVGSSVKPKGSASSKPLTGPGSDLKPATLNGKTPSSSLVGAA 638

The large phosphorylated protein (UL32-like) of herpes viruses is the polypeptide most frequently reactive in immuno-blotting analyses with antisera when compared with other viral proteins. Length = 777

>gnl|CDD|222095 pfam13388, DUF4106, Protein of unknown function (DUF4106)

 Score = 40.0 bits (93), Expect = 0.002
 Identities = 21/87 (24%), Positives = 26/87 (29%), Gaps = 4/87 (4%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
           R  PKP+        A   +   PA  P       P  P     P  P   P    +   
Sbjct: 198 RHAPKPTQQPTVQNPAQQPTVQNPAQQPQQQPQQQPVQPAQQPTPQNPAQQPPQTEQ--- 254

Query: 164 SGDKVQRAPELVEFYQTLMKREAKKDT 190
            G K  R     EF + L +     DT
Sbjct: 255 -GHKRSREQGNQEFLKMLKEDYGYPDT 280

This family of proteins are found in large numbers in the Trichomonas vaginalis proteome. The function of this protein is unknown. Length = 422

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.4 bits (92), Expect = 0.002
 Identities = 14/39 (35%), Positives = 14/39 (35%)

Query: 121 PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P       P  PP A P P  P     P P  PPP   P
Sbjct: 155 PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAP 193

Length = 274

>gnl|CDD|179538 PRK03100, PRK03100, sec-independent translocase; Provisional

 Score = 37.7 bits (88), Expect = 0.002
 Identities = 10/33 (30%), Positives = 13/33 (39%)

Query: 118 NANPSSGTPPAPPPPPGATPPPPPPPPPGGPPP 150
           +   +    P+ P   G  PP   P  PG  PP
Sbjct: 98  DQTGNGRPTPSSPDAAGPAPPDATPLAPGERPP 130

Length = 136

>gnl|CDD|147144 pfam04834, Adeno_E3_14_5, Early E3 14

 Score = 37.0 bits (86), Expect = 0.002
 Identities = 14/38 (36%), Positives = 15/38 (39%), Gaps = 2/38 (5%)

Query: 116 GTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPP 153
           G NA  +   P  P P     P   PPPPP   P  P 
Sbjct: 50  GWNAPNALDLPRYPDPQ--HIPLQQPPPPPEPQPRAPS 85

5 kDa protein. The E3B 14.5 kDa was first identified in Human adenovirus type 5. It is an integral membrane protein oriented with its C terminus in the cytoplasm. It functions to down-regulate the epidermal growth factor receptor and prevent tumour necrosis factor cytolysis. It achieves this through the interaction with E3 10.4 kDa protein. Length = 97

>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein (DUF2360)

 Score = 37.8 bits (88), Expect = 0.003
 Identities = 19/56 (33%), Positives = 20/56 (35%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
           PPP  S     G    P +    A PPPP A   PP  P P  P          PR
Sbjct: 59  PPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTVAKDPR 114

This is the conserved 140 amino acid region of a family of proteins conserved from nematodes to humans. One C. elegans member is annotated as a Daf-16-dependent longevity protein 1 but this could not be confirmed. The function is unknown. Length = 147

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 15/70 (21%), Positives = 16/70 (22%), Gaps = 3/70 (4%)

Query: 107 PKPSGGAPAGTNANPSSGTPP---APPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
           P P      G  A  SSG P     P  P     P  P P      P        P    
Sbjct: 590 PAPGAAGGEGPPAPASSGPPEEAARPAAPAAPAAPAAPAPAGAAAAPAEASAAPAPGVAA 649

Query: 164 SGDKVQRAPE 173
                +    
Sbjct: 650 PEHHPKHVAV 659

Length = 824

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 14/61 (22%), Positives = 15/61 (24%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
                         APA   A PS          P   P   P   P   P   P P + 
Sbjct: 420 AAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQPAPAPAAAPEPTAA 479

Query: 159 P 159
           P
Sbjct: 480 P 480

Length = 824

>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 20/77 (25%), Positives = 25/77 (32%), Gaps = 2/77 (2%)

Query: 99  PPRVFRPPPK--PSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
           PP    P P   P+  APA   A   +    AP PP  A P     P    P P      
Sbjct: 417 PPAAAPPAPVAAPAAAAPAAAPAAAPAAVALAPAPPAQAAPETVAIPVRVAPEPAVASAA 476

Query: 157 SLPRGVGSGDKVQRAPE 173
             P    +  ++    E
Sbjct: 477 PAPAAAPAAARLTPTEE 493

Length = 618

>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 34/205 (16%), Positives = 64/205 (31%), Gaps = 28/205 (13%)

Query: 49  DSKHPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPK 108
           D       PK  +   KP+ +  ++       AA S + S+   +               
Sbjct: 367 DDASGGRGPKQHI---KPVFTQPAAAPQPSAAAAASPSPSQSSAA-----AQPSAPQSAT 418

Query: 109 PSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP--GSLPRGVGSG- 165
              G P   + +P +     P  PP  T P    P         P     SL        
Sbjct: 419 QPAGTPPTVSVDPPA---AVPVNPPS-TAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPI 474

Query: 166 -DKVQRAPELVEFYQTLMKREAKKD----------TSSLISSTSNTSDARSNMIGEIENK 214
            +K ++A   ++   T  ++E   +            +         +   N   ++ N 
Sbjct: 475 QEKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQEFAGTRPQEEKALKETMINCRPKLLNG 534

Query: 215 SSFLLAVKADVETQGDFVQSLAAEV 239
           ++F +AV  D E Q   + +L  ++
Sbjct: 535 TTFEVAV--DNELQEKELTNLIPDL 557

Length = 614

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.6 bits (93), Expect = 0.003
 Identities = 14/51 (27%), Positives = 17/51 (33%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
                +       +  P+   P AP     AT P PPP     P P P  P
Sbjct: 371 ASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEP 421

Length = 620

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 17/39 (43%), Positives = 17/39 (43%), Gaps = 5/39 (12%)

Query: 126 PPAP-----PPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           PPAP     PPPP A PP  PP     P  P   P   P
Sbjct: 146 PPAPVVMMQPPPPHAMPPASPPAAQPAPSAPASSPPPTP 184

Length = 274

>gnl|CDD|223065 PHA03378, PHA03378, EBNA-3B; Provisional

 Score = 40.1 bits (93), Expect = 0.003
 Identities = 24/65 (36%), Positives = 28/65 (43%), Gaps = 2/65 (3%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           RPP       +P   AP    A P +  P AP P P    PP P   P G P P PPP +
Sbjct: 745 RPPAAAPGRARPPAAAP--GRARPPAAAPGAPTPQPPPQAPPAPQQRPRGAPTPQPPPQA 802

Query: 158 LPRGV 162
            P  +
Sbjct: 803 GPTSM 807

Length = 991

>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein

 Score = 36.6 bits (85), Expect = 0.003
 Identities = 13/23 (56%), Positives = 13/23 (56%)

Query: 126 PPAPPPPPGATPPPPPPPPPGGP 148
           P AP PPP   PP P PPP   P
Sbjct: 1   PAAPVPPPAPAPPAPAPPPAAPP 23

Members of this family confer resistance to the metalloid element tellurium and its salts. Length = 98

>gnl|CDD|235899 PRK06975, PRK06975, bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed

 Score = 39.7 bits (93), Expect = 0.003
 Identities = 13/48 (27%), Positives = 14/48 (29%), Gaps = 1/48 (2%)

Query: 119 ANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPP-PPGSLPRGVGSG 165
           A P+             T  P        PPP PP  P   P   G G
Sbjct: 275 AAPAPSRMTDTNDSKSVTSQPAAAAAAPAPPPNPPATPPEPPARRGRG 322

Length = 656

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.8 bits (93), Expect = 0.003
 Identities = 23/89 (25%), Positives = 28/89 (31%), Gaps = 7/89 (7%)

Query: 84  SQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPP 143
            Q    ++  Q      ++  PPP+P                P A PPP     P P  P
Sbjct: 237 PQQPPPLQQPQFPGLSQQMPPPPPQPPQQQQQ-------PPQPQAQPPPQNQPTPHPGLP 289

Query: 144 PPGGPPPPPPPPGSLPRGVGSGDKVQRAP 172
                P PPP    L   V      QR P
Sbjct: 290 QGQNAPLPPPQQPQLLPLVQQPQGQQRGP 318

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|220441 pfam09849, DUF2076, Uncharacterized protein conserved in bacteria (DUF2076)

 Score = 38.9 bits (91), Expect = 0.003
 Identities = 13/47 (27%), Positives = 14/47 (29%)

Query: 111 GGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           GG          +  PPAPP  PG     P     G  P    P   
Sbjct: 88  GGGAPRPPPAAPAVQPPAPPARPGWGSGGPSQQGAGQQPGYAQPGPG 134

This domain, found in various hypothetical prokaryotic proteins, has no known function. The domain, however, is found in various periplasmic ligand-binding sensor proteins. Length = 234

>gnl|CDD|236511 PRK09429, mepA, penicillin-insensitive murein endopeptidase; Reviewed

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 18/51 (35%), Positives = 19/51 (37%), Gaps = 14/51 (27%)

Query: 114 PAGTNANPSSGTPPAPPPPPG---------ATPPPPPPPPPGGPPPPPPPP 155
           PAG     S       PPPPG          +  P  PP P   P P PPP
Sbjct: 217 PAG-----SPECEDQAPPPPGDGCGAELASWSDAPFEPPKPTTKPKPKPPP 262

Length = 275

>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed

 Score = 39.4 bits (93), Expect = 0.003
 Identities = 10/50 (20%), Positives = 15/50 (30%)

Query: 108 KPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           + +  APA   A  ++    A    P   P     P    P     P  +
Sbjct: 193 EVAAAAPAAAAAPAAAAPAAAAAAAPAPAPAAAAAPAAAAPAAAAAPGKA 242

Length = 547

>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated

 Score = 39.6 bits (93), Expect = 0.004
 Identities = 16/75 (21%), Positives = 20/75 (26%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
                     P+  A     A P     PAP P P +     P      PPP   P    
Sbjct: 407 AAAPAPAAAAPAAAAAPAPAAAPQPAPAPAPAPAPPSPAGNAPAGGAPSPPPAAAPSAQP 466

Query: 159 PRGVGSGDKVQRAPE 173
                +  +   AP 
Sbjct: 467 APAPAAAPEPTAAPA 481

Length = 824

>gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional

 Score = 39.2 bits (92), Expect = 0.004
 Identities = 21/77 (27%), Positives = 23/77 (29%)

Query: 82  AESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPP 141
           A    I+           P    PP      AP    A  +   PPA   PP   P  P 
Sbjct: 363 AFISEIANASAPANPTPAPNPSPPPAPIQPSAPKTKQAATTPSPPPAKASPPIPVPAEPT 422

Query: 142 PPPPGGPPPPPPPPGSL 158
            P P  P      P SL
Sbjct: 423 EPSPTPPANAANAPPSL 439

Length = 620

>gnl|CDD|221818 pfam12868, DUF3824, Domain of unknwon function (DUF3824)

 Score = 37.2 bits (86), Expect = 0.004
 Identities = 25/56 (44%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPG-GPPPPPPPPGSLP 159
           P P P     +     P+S   P   PPPG+TP PPP P PG  P   PPPPG++P
Sbjct: 56  PTPYPPSPPVSDPRYYPNSNYFP---PPPGSTPVPPPGPQPGYNPADYPPPPGAVP 108

This is a repeating domain found in fungal proteins. It is proline-rich, and the function is not known. Length = 135

>gnl|CDD|215533 PLN02983, PLN02983, biotin carboxyl carrier protein of acetyl-CoA carboxylase

 Score = 38.7 bits (90), Expect = 0.004
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 8/74 (10%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRG--- 161
           PPP  +    +   A P+   P + PPP  A+PPP   P    PP   P  G+  R    
Sbjct: 155 PPPPHAMPPASPPAAQPAPSAPASSPPPTPASPPPAKAPKSSHPPLKSPMAGTFYRSPAP 214

Query: 162 -----VGSGDKVQR 170
                V  GDKVQ+
Sbjct: 215 GEPPFVKVGDKVQK 228

Length = 274

>gnl|CDD|220392 pfam09770, PAT1, Topoisomerase II-associated protein PAT1

 Score = 39.4 bits (92), Expect = 0.004
 Identities = 22/101 (21%), Positives = 31/101 (30%), Gaps = 4/101 (3%)

Query: 63  KEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAG----TN 118
             + ++S +  +     R    Q     +    +  PPR    P +     P G      
Sbjct: 149 PAQKMLSLEEVEAQLQQRQQAPQLPQPPQQVLPQGMPPRQAAFPQQGPPEQPPGYPQPPQ 208

Query: 119 ANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
            +P    P    P P   P  PP PP     PPP      P
Sbjct: 209 GHPEQVQPQQFLPAPSQAPAQPPLPPQLPQQPPPLQQPQFP 249

Members of this family are necessary for accurate chromosome transmission during cell division. Length = 804

>gnl|CDD|222828 PHA01732, PHA01732, proline-rich protein

 Score = 36.3 bits (83), Expect = 0.004
 Identities = 17/40 (42%), Positives = 18/40 (45%)

Query: 121 PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
           P    PPAP PP    PPPP PP P   P   P     P+
Sbjct: 7   PKPPEPPAPLPPAPVPPPPPAPPAPVPEPTVKPVNAEAPK 46

Length = 94

>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional

 Score = 39.1 bits (92), Expect = 0.004
 Identities = 17/74 (22%), Positives = 26/74 (35%), Gaps = 4/74 (5%)

Query: 116 GTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELV 175
           G +A+ +   P A      A P            P P  P +    V +   +    E+V
Sbjct: 81  GESASDAGAAPAAAAEAAAAAPAAAAAAAAKKAAPAPAAPAAPAAEVAADPDIPAGTEMV 140

Query: 176 EFYQTLMKREAKKD 189
               T+  REA +D
Sbjct: 141 T--MTV--REALRD 150

Length = 464

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	442
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.89
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	99.19
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	98.7
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	98.05
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	96.9
KOG1925	817	consensus Rac1 GTPase effector FHOS [Signal transd	96.05
KOG3671	569	consensus Actin regulatory protein (Wiskott-Aldric	95.67
KOG1923	830	consensus Rac1 GTPase effector FRL [Signal transdu	95.27
PHA03247	3151	large tegument protein UL36; Provisional	94.46
PRK15319	2039	AIDA autotransporter-like protein ShdA; Provisiona	92.9
KOG3997	281	consensus Major apurinic/apyrimidinic endonuclease	91.71
PHA01732	94	proline-rich protein	90.38
KOG1922	833	consensus Rho GTPase effector BNI1 and related for	89.57
KOG4672	487	consensus Uncharacterized conserved low complexity	89.3
KOG4849	498	consensus mRNA cleavage factor I subunit/CPSF subu	84.47
KOG1830	518	consensus Wiskott Aldrich syndrome proteins [Cytos	83.84
KOG0132	894	consensus RNA polymerase II C-terminal domain-bind	83.14
KOG2391	365	consensus Vacuolar sorting protein/ubiquitin recep	82.81

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.89  E-value=3.9e-23  Score=220.50  Aligned_cols=38  Identities=21%  Similarity=0.333  Sum_probs=35.5

Q ss_pred             cccCCCCccchhhhhhHHHHHHHHHHHHHHhhhccCCC
Q 036026           10 AEKYPAYKDRHKLALEREKQIKEKAEKARAYRFRDNSN   47 (442)
Q Consensus        10 ~~~~P~f~~r~~l~~d~~~~i~~~~~k~~~~~~~~~~~   47 (442)
                      +|+||||+||+||+||++.+||.|+||++++++++++.
T Consensus       440 ~~~DPdf~yr~~l~id~~~liD~~vdkak~eeseqkA~  477 (1102)
T KOG1924|consen  440 TGMDPDFKYRFRLDIDLTELIDKMVDKAKAEESEQKAA  477 (1102)
T ss_pred             CCCCCCcchhhcccCcHHHHHHHHHHHHHHHHHHHHHH
Confidence            68999999999999999999999999999999997653

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=99.19  E-value=1.2e-10  Score=125.85  Aligned_cols=62  Identities=21%  Similarity=0.303  Sum_probs=41.8

Q ss_pred             hhhhhccCCChhhHHHHHHHHhhhhHHHHHHHhhccccCCCCCc--hHHHHHHH--HHHHHHHHHHH
Q 036026          268 RAVLKHFDWPEGKADALREAAFEYQDLVKLEKQVSSFVDDPGLP--CESALKKM--YKLLEKVEQSV  330 (442)
Q Consensus       268 ~~vLK~F~~pe~kl~aLre~~~~Y~~L~~l~~~l~~~~~~~~~~--~~~~lkKm--~~ll~K~e~sv  330 (442)
                      +++++|++. .+.++.|++.+.+|.+|.+.|+++.......+|+  ++.+|=||  ...++-|.-+|
T Consensus       736 qnLik~lPe-~E~l~~L~e~Kaeye~l~e~EQF~vvm~~vkrL~pRL~~ilFKl~fse~vnniKP~i  801 (1102)
T KOG1924|consen  736 QNLIKHLPE-QEQLNKLSELKAEYEDLPEPEQFVVVMSQVKRLRPRLSAILFKLTFSEQVNNIKPDI  801 (1102)
T ss_pred             HHHHHhCCC-HHHHHHHHHHHHhccCCCCHHHHhHHHhhccccChhHHHHHHHhhHHHHHhhcChHH
Confidence            378899984 4669999999999999999999866654333332  34444454  34455444433

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=98.70  E-value=3.4e-08  Score=101.28  Aligned_cols=62  Identities=27%  Similarity=0.413  Sum_probs=50.2

Q ss_pred             cCCCCChhhhhhhhhhhhccchhhhhhhhcccccc-------cccchhhHhhhhccccchHHHH-HH--HHhhh
Q 036026          195 SSTSNTSDARSNMIGEIENKSSFLLAVKADVETQG-------DFVQSLAAEVRAASFTTVEDLV-VF--VNWLD  258 (442)
Q Consensus       195 ss~~~~sd~rs~li~eIenrS~~Llaik~dve~q~-------dfI~~L~~eIraa~f~diedl~-~F--v~wld  258 (442)
                      ..++..+|+|++|++.|+ .+..|.+|+++.++.+       |+++.|.++| +..|+|.||-. +|  .+|+|
T Consensus       447 ~~lP~~sDaRsdLL~aIr-~GiqLrKVeeqreqeakr~~v~ndvatiLsRRi-aveysdseDdssefDe~dW~d  518 (518)
T KOG1830|consen  447 PVLPPISDARSDLLAAIR-SGIQLRKVEEQREQEAKREAVENDVATILSRRI-AVEYSDSEDDSSEFDEDDWSD  518 (518)
T ss_pred             CCCCCCCchHHHHHHHHH-hcchhHHHHHHHHHHHhhccccchHHHHHHHHH-HHHhccCcccccccccccccC
Confidence            556788999999999998 7889999988776543       8899999988 88899988776 66  45653

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=98.05  E-value=1.6e-05  Score=83.66  Aligned_cols=38  Identities=16%  Similarity=0.020  Sum_probs=31.5

Q ss_pred             CCCCCchhhhhhhcCCCccCCCCCCCccchhhhhhhccc
Q 036026           51 KHPTLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISK   89 (442)
Q Consensus        51 ~~~~L~pkl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (442)
                      ....+++.++.++.+++++..+..+.+++++ ++++|.+
T Consensus       261 ~p~~~dp~~nn~~s~agise~~l~~~~t~~f-i~~fi~k  298 (569)
T KOG3671|consen  261 APNNNDPPLNNLFSSAGISEAQLTERDTMKF-IYDFIQK  298 (569)
T ss_pred             CCCCCChhhhcccccCCCCcccccchhhccc-cccchhc
Confidence            3478999999999999999999988887776 6666665

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=96.90  E-value=0.082  Score=58.93  Aligned_cols=13  Identities=38%  Similarity=0.531  Sum_probs=7.5

Q ss_pred             HHHHHHHHHHHHH
Q 036026          315 ALKKMYKLLEKVE  327 (442)
Q Consensus       315 ~lkKm~~ll~K~e  327 (442)
                      .+.||+++-+|++
T Consensus       516 ~lskIErle~kla  528 (830)
T KOG1923|consen  516 SLSKIERLEEKLA  528 (830)
T ss_pred             hhhhhhhhHHHHH
Confidence            3456666666655

>KOG1925 consensus Rac1 GTPase effector FHOS [Signal transduction mechanisms; Cytoskeleton]

Probab=96.05  E-value=0.023  Score=60.55  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=20.9

Q ss_pred             ccccCCCCChhhhhhhhhhhhccchhhhhhhh
Q 036026          192 SLISSTSNTSDARSNMIGEIENKSSFLLAVKA  223 (442)
Q Consensus       192 s~~ss~~~~sd~rs~li~eIenrS~~Llaik~  223 (442)
                      +.|++.-.++.+...+.+.||.|..-...+|.
T Consensus       308 t~W~s~D~~~~D~~r~~~LFEsr~~~~~P~KK  339 (817)
T KOG1925|consen  308 TLWASLDPVSVDTARLEHLFESRAKEVLPSKK  339 (817)
T ss_pred             hhhhccCcceecHHHHHHHHHHhhhhhccchh
Confidence            45666656666667788888877665444443

>KOG3671 consensus Actin regulatory protein (Wiskott-Aldrich syndrome protein) [Signal transduction mechanisms; Cytoskeleton]

Probab=95.67  E-value=0.036  Score=58.99  Aligned_cols=23  Identities=22%  Similarity=0.437  Sum_probs=18.6

Q ss_pred             Chhhhhhhhhhhhccchhhhhhhh
Q 036026          200 TSDARSNMIGEIENKSSFLLAVKA  223 (442)
Q Consensus       200 ~sd~rs~li~eIenrS~~Llaik~  223 (442)
                      ..|+|.++++.|+ .+..|..++.
T Consensus       491 ~~dgR~~LmaqIR-qG~~Lk~v~~  513 (569)
T KOG3671|consen  491 SGDGRDALMAQIR-QGGQLKKVDS  513 (569)
T ss_pred             CcccHHHHHHHHH-hcccccccch
Confidence            6789999999999 6677776655

>KOG1923 consensus Rac1 GTPase effector FRL [Signal transduction mechanisms; Cytoskeleton]

Probab=95.27  E-value=0.27  Score=54.99  Aligned_cols=7  Identities=14%  Similarity=0.083  Sum_probs=3.0

Q ss_pred             HHhhhhh
Q 036026          398 LLQGVRF  404 (442)
Q Consensus       398 l~~~~~f  404 (442)
                      ||+.|+-
T Consensus       685 l~~~~k~  691 (830)
T KOG1923|consen  685 LRKDFKD  691 (830)
T ss_pred             HHHHHHH
Confidence            4444443

>PHA03247 large tegument protein UL36; Provisional

Probab=94.46  E-value=0.12  Score=64.05  Aligned_cols=30  Identities=23%  Similarity=0.246  Sum_probs=23.8

Q ss_pred             HHHHHHHHHHHHHHHHHhchHHHhhhhhhc
Q 036026          318 KMYKLLEKVEQSVYALLRTRDMAISRYREF  347 (442)
Q Consensus       318 Km~~ll~K~e~sv~~l~Rtrd~~~~~~~~~  347 (442)
                      -|.-|++-|++-++.|-+||.-++.|-...
T Consensus      3110 alAlLi~ACr~i~r~lr~TR~~L~~~~~~v 3139 (3151)
T PHA03247       3110 ALAVLIEACRRIRRQLRRTRHALLDRSGAV 3139 (3151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            456688888998999999999887776543

>PRK15319 AIDA autotransporter-like protein ShdA; Provisional

Probab=92.90  E-value=0.16  Score=61.58  Aligned_cols=10  Identities=50%  Similarity=0.518  Sum_probs=4.6

Q ss_pred             HHHHHHhhhh
Q 036026          177 FYQTLMKREA  186 (442)
Q Consensus       177 fy~sL~krda  186 (442)
                      |.+.|..|.+
T Consensus      1745 fl~TLHDR~G 1754 (2039)
T PRK15319       1745 QMQTLYDREG 1754 (2039)
T ss_pred             hcccHHHcCC
Confidence            3344555544

>KOG3997 consensus Major apurinic/apyrimidinic endonuclease/3'-repair diesterase APN1 [Replication, recombination and repair]

Probab=91.71  E-value=2.3  Score=41.53  Aligned_cols=93  Identities=18%  Similarity=0.258  Sum_probs=60.5

Q ss_pred             hhhhhcCCCcccccccchhhHHHHHHHHHHHHHHHHHHHHHhhc-------cCCCCC--Cchh--hhHHhhhhhHHH---
Q 036026          342 SRYREFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAM-------SRPEKE--PNRE--FLLLQGVRFAFR---  407 (442)
Q Consensus       342 ~~~~~~~ip~~~~ld~~~~~~ik~~sv~la~~~m~rv~~el~~~-------~~~~~~--~~~~--~ll~~~~~fa~r---  407 (442)
                      .|++..||-.+=|.-..-+++-|+--++---.|+.+|++|-+.+       .|.+.-  ..-+  +.+.-.+.--=|   
T Consensus        97 ~Rce~LGIgmYN~HPGSt~~~~kee~l~~ia~~in~a~eetk~V~ivlEnMAGqGn~vG~tfeelk~ii~~Ikdk~RigV  176 (281)
T KOG3997|consen   97 QRCEKLGIGMYNFHPGSTVGKEKEECLTTIAETINFAVEETKNVIIVLENMAGQGNSVGGTFEELKFIIGKIKDKSRIGV  176 (281)
T ss_pred             HHHHHhCceeeecCCCccccccHHHHHHHHHHHHHHHHHhccceEEEeecccCCCCcccccHHHHHHHHHhhcchhhhee
Confidence            45778888776666666778888777766668999999886542       222211  1111  113333332223   


Q ss_pred             ----HhhhccccchhHhHHHHHHHHhhhhhc
Q 036026          408 ----VHQFAGGFDAESMKAFEVLRSRVHKQT  434 (442)
Q Consensus       408 ----v~~fagg~d~~~~~~~~el~~~~~~~~  434 (442)
                          -|+||+|+|=+|.++|+|+-++.....
T Consensus       177 ClDTCH~FaaGyDI~Tee~y~evmkeFdevV  207 (281)
T KOG3997|consen  177 CLDTCHTFAAGYDIRTEEAYEEVMKEFDEVV  207 (281)
T ss_pred             eHhhhhhhccccccchHHHHHHHHHHHHHHh
Confidence                399999999999999999988766543

>PHA01732 proline-rich protein

Probab=90.38  E-value=1.1  Score=37.45  Aligned_cols=12  Identities=25%  Similarity=0.174  Sum_probs=4.8

Q ss_pred             chhHHHHHHHHH
Q 036026          171 APELVEFYQTLM  182 (442)
Q Consensus       171 aP~L~efy~sL~  182 (442)
                      ++.|.+.-..+.
T Consensus        44 apki~~~~skrg   55 (94)
T PHA01732         44 APKIREAQSKRG   55 (94)
T ss_pred             hhHHHHHHHHHH
Confidence            344444433333

>KOG1922 consensus Rho GTPase effector BNI1 and related formins [Signal transduction mechanisms; Cytoskeleton]

Probab=89.57  E-value=4.3  Score=46.61  Aligned_cols=17  Identities=12%  Similarity=-0.003  Sum_probs=10.9

Q ss_pred             ccCchhHHHHHHHHHhh
Q 036026          168 VQRAPELVEFYQTLMKR  184 (442)
Q Consensus       168 v~RaP~L~efy~sL~kr  184 (442)
                      +...+.+..++|...+-
T Consensus       390 ~~p~~~lk~l~wdk~~~  406 (833)
T KOG1922|consen  390 AQPKNKLKPLHWDKTRG  406 (833)
T ss_pred             CCCCCCCCCccccccCC
Confidence            33456677788877654

>KOG4672 consensus Uncharacterized conserved low complexity protein [Function unknown]

Probab=89.30  E-value=1.5  Score=46.10  Aligned_cols=6  Identities=17%  Similarity=0.446  Sum_probs=2.5

Q ss_pred             HHHHhh
Q 036026          252 VFVNWL  257 (442)
Q Consensus       252 ~Fv~wl  257 (442)
                      .|.+-+
T Consensus       478 ~FMkEM  483 (487)
T KOG4672|consen  478 AFMKEM  483 (487)
T ss_pred             HHHHHH
Confidence            444433

>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]

Probab=84.47  E-value=6.4  Score=40.85  Aligned_cols=7  Identities=29%  Similarity=0.890  Sum_probs=3.2

Q ss_pred             HHHHHhh
Q 036026          178 YQTLMKR  184 (442)
Q Consensus       178 y~sL~kr  184 (442)
                      |..+|+|
T Consensus       362 FEdiM~R  368 (498)
T KOG4849|consen  362 FEDIMTR  368 (498)
T ss_pred             HHHHHhh
Confidence            4444544

>KOG1830 consensus Wiskott Aldrich syndrome proteins [Cytoskeleton]

Probab=83.84  E-value=3.5  Score=43.65  Aligned_cols=20  Identities=25%  Similarity=0.459  Sum_probs=14.4

Q ss_pred             hhhhHHHHHHHHHHHHHHhh
Q 036026           22 LALEREKQIKEKAEKARAYR   41 (442)
Q Consensus        22 l~~d~~~~i~~~~~k~~~~~   41 (442)
                      |+|=.|+.+++-.|+.+..+
T Consensus       158 FDLWKekmLqdted~~kekr  177 (518)
T KOG1830|consen  158 FDLWKEKMLQDTEDKMKEKR  177 (518)
T ss_pred             HHHHHHHHHHHHHHHHhhhh
Confidence            67778888888887655443

>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]

Probab=83.14  E-value=6  Score=44.83  Aligned_cols=11  Identities=27%  Similarity=0.320  Sum_probs=5.9

Q ss_pred             CCCCchhhhhh
Q 036026           52 HPTLPPKLALL   62 (442)
Q Consensus        52 ~~~L~pkl~~~   62 (442)
                      -..+.+.+..|
T Consensus       534 ~~t~~p~~kgi  544 (894)
T KOG0132|consen  534 GTTGPPEWKGI  544 (894)
T ss_pred             CccCCcccccc
Confidence            34455666555

>KOG2391 consensus Vacuolar sorting protein/ubiquitin receptor VPS23 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]

Probab=82.81  E-value=8.1  Score=39.93  Aligned_cols=20  Identities=30%  Similarity=0.303  Sum_probs=10.9

Q ss_pred             Hhhhhhhhhchhhhhhhhcc
Q 036026          255 NWLDEELSFLVDERAVLKHF  274 (442)
Q Consensus       255 ~wld~eL~~L~de~~vLK~F  274 (442)
                      ...++++..+-.++.-||++
T Consensus       221 ~r~eeeme~~~aeq~slkRt  240 (365)
T KOG2391|consen  221 RRREEEMERLQAEQESLKRT  240 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHhh
Confidence            34455555555555556655

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	442
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	5e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	9e-10
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	2e-09
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	3e-08
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	1e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	4e-07
3pgw_B	231	SM B; protein-RNA complex, U1 snRNA, SM fold, SM c	7e-05
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	4e-09
2z73_A	448	Rhodopsin; visual pigment, GQ-type, G-protein coup	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-09
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-08
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	3e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	8e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-06
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	9e-05
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	1e-04
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	3e-08
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	5e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	9e-06
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	1e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	4e-05
1dx0_A	219	Prion protein; brain, repeat; NMR {Bos taurus} SCO	7e-05
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	7e-08
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	1e-06
3q2s_C	229	Cleavage and polyadenylation specificity factor S;	1e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	6e-07
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	3e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	5e-05
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	1e-04
1deq_A	390	Fibrinogen (alpha chain); coiled-coil, blood clott	2e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	2e-06
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	2e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	2e-04
2kpy_A	108	Major pollen allergen ART V 1; defensin-like, poly	3e-04
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	4e-06
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-05
1pk8_A	422	RAT synapsin I; ATP binding, ATP grAsp, calcium (I	7e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	8e-06
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	2e-05
3v1v_A	433	2-MIB synthase, 2-methylisoborneol synthase; class	3e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	1e-05
3nwa_A	703	GB, GB-1, GB1, envelope glycoprotein B; coiled-coi	2e-04
1jer_A	138	Cucumber stellacyanin; electron transport, copper,	4e-05
1twf_A	1733	B220, DNA-directed RNA polymerase II largest subun	6e-05
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	1e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	5e-04
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	8e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	1e-04
3oun_A	157	Putative uncharacterized protein TB39.8; peptidogl	2e-04
2yew_A	253	Capsid protein, coat protein; alphavirus, molecula	2e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	3e-04
1y0f_A	1054	Collagen I alpha 1; native, in SITU, triple-helix,	6e-04
1jvr_A	137	HTLV-II MA, MA, human T-cell leukemia virus type I	3e-04
2b5l_C	222	Nonstructural protein V; DDB1, SV5-V, beta propell	3e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	3e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	5e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	6e-04
2uv8_A	1887	Fatty acid synthase subunit alpha (FAS2); fatty ac	8e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	3e-04
2uv9_A	1878	Fatty acid synthase alpha subunits; fungal, dehydr	6e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	4e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	6e-04
3a58_A	320	Exocyst complex component SEC3; protein complex, P	6e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-04
3dva_I	428	Dihydrolipoyllysine-residue acetyltransferase comp	5e-04
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	6e-04
4f6o_A	350	Metacaspase-1; rossmann fold, hydrolase; HET: DFH;	6e-04

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 60.0 bits (145), Expect = 2e-10
 Identities = 19/62 (30%), Positives = 20/62 (32%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
               V       +          P     P PP   GA PP    PPPG  PP  PP G 
Sbjct: 146 GRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGI 205

Query: 158 LP 159
            P
Sbjct: 206 PP 207

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 21/66 (31%), Positives = 22/66 (33%), Gaps = 3/66 (4%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPP---PPPGGPPPPPPP 154
                  P   P G           +  P    PPPG  PP  PP   PP  G P   PP
Sbjct: 158 TASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPP 217

Query: 155 PGSLPR 160
           PG  P 
Sbjct: 218 PGMRPP 223

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 19/68 (27%), Positives = 24/68 (35%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           +           +  + AG       G    PPP     PPP    PP G  PP  PP  
Sbjct: 145 QGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMG 204

Query: 158 LPRGVGSG 165
           +P G G+ 
Sbjct: 205 IPPGRGTP 212

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 57.7 bits (139), Expect = 9e-10
 Identities = 19/69 (27%), Positives = 23/69 (33%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVG 163
           R     +  A   + A   +  PP    PP       PPP   GPPP   PP   P G+ 
Sbjct: 147 RGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIP 206

Query: 164 SGDKVQRAP 172
            G       
Sbjct: 207 PGRGTPMGM 215

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 17/61 (27%), Positives = 20/61 (32%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            P+        +  A A     P+   P    PPP      PPP   G PP   PP G  
Sbjct: 143 TPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPP 202

Query: 159 P 159
            
Sbjct: 203 M 203

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 54.7 bits (131), Expect = 1e-08
 Identities = 19/67 (28%), Positives = 23/67 (34%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
             +V  P  + +  A A       +G P   PP  G  PPP     P      PPP    
Sbjct: 138 SQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRGAPPPGMMGPPPGMRP 197

Query: 159 PRGVGSG 165
           P G   G
Sbjct: 198 PMGPPMG 204

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 53.1 bits (127), Expect = 3e-08
 Identities = 19/76 (25%), Positives = 23/76 (30%), Gaps = 2/76 (2%)

Query: 99  PPRVFRPPPKPSGGAPAG--TNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
            P     P +  GG      T     +    A          P   PP  G PPPP   G
Sbjct: 123 APAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGPPPPMGRG 182

Query: 157 SLPRGVGSGDKVQRAP 172
           + P G+       R P
Sbjct: 183 APPPGMMGPPPGMRPP 198

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 51.2 bits (122), Expect = 1e-07
 Identities = 26/64 (40%), Positives = 26/64 (40%), Gaps = 3/64 (4%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPP---PPPPPPPGGPPPPPPP 154
            PP    PPP    GAP      P  G  P   PP G  P    P   PPPG  PPPP  
Sbjct: 168 YPPGRGGPPPPMGRGAPPPGMMGPPPGMRPPMGPPMGIPPGRGTPMGMPPPGMRPPPPGM 227

Query: 155 PGSL 158
            G L
Sbjct: 228 RGLL 231

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 49.6 bits (118), Expect = 4e-07
 Identities = 12/69 (17%), Positives = 14/69 (20%)

Query: 97  KRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPG 156
           +  P     P  P+G A         S     P                    P   PPG
Sbjct: 112 RGIPAGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPG 171

Query: 157 SLPRGVGSG 165
                   G
Sbjct: 172 RGGPPPPMG 180

>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_A Length = 231

 Score = 43.1 bits (101), Expect = 7e-05
 Identities = 13/87 (14%), Positives = 18/87 (20%), Gaps = 5/87 (5%)

Query: 84  SQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGT-----NANPSSGTPPAPPPPPGATPP 138
           S T+              +      P  G  AG         P +    A P      P 
Sbjct: 79  SMTVEGPPPKDTGIARVPLAGAAGGPGIGRAAGRGIPAGVPMPQAPAGLAGPVRGVGGPS 138

Query: 139 PPPPPPPGGPPPPPPPPGSLPRGVGSG 165
                P G          +     G+ 
Sbjct: 139 QQVMTPQGRGTVAAAAAAATASIAGAP 165

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 57.6 bits (139), Expect = 4e-09
 Identities = 32/113 (28%), Positives = 42/113 (37%), Gaps = 4/113 (3%)

Query: 54  TLPPKLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGA 113
           T P  L   +     + D  D   +  A ES   +    +   K    + +   +     
Sbjct: 329 TFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQQQQAAY 388

Query: 114 PAGTNANPSSGTPPAPPPP----PGATPPPPPPPPPGGPPPPPPPPGSLPRGV 162
           P    A P  G PP   PP    P   PP   PPPP G PP   PP + P+GV
Sbjct: 389 PPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQGV 441

>2z73_A Rhodopsin; visual pigment, GQ-type, G-protein coupled receptor, chromophore, glycoprotein, lipoprotein, membrane, palmitate phosphorylation; HET: BOG RET PLM TWT PC1; 2.50A {Todarodes pacificus} PDB: 3aym_A* 3ayn_A* 2ziy_A* Length = 448

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 24/117 (20%), Positives = 34/117 (29%), Gaps = 5/117 (4%)

Query: 58  KLALLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGT 117
           + A+ +  P V         +    +            +  P        +         
Sbjct: 323 REAISQTFPWVLTCCQFDDKETEDDKDAETEIPAGESSDAAPSADAAQMKEMMAMMQKMQ 382

Query: 118 NANPSSGTPPAPPPPPGATP--PPPPPPPPGGPPP---PPPPPGSLPRGVGSGDKVQ 169
               +       PPP G  P   PP   PP G PP   PPPP G+ P+G       Q
Sbjct: 383 QQQAAYPPQGYAPPPQGYPPQGYPPQGYPPQGYPPQGYPPPPQGAPPQGAPPAAPPQ 439

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 57.5 bits (138), Expect = 5e-09
 Identities = 15/62 (24%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
              RV+ P  +   G  A     P+   PP  P   G +      PP G  P        
Sbjct: 4   HKKRVY-PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFL 62

Query: 158 LP 159
            P
Sbjct: 63  TP 64

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 55.2 bits (132), Expect = 2e-08
 Identities = 10/61 (16%), Positives = 13/61 (21%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
           P +   P    + G   G    P  G  P+       TP                    L
Sbjct: 26  PAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHL 85

Query: 159 P 159
            
Sbjct: 86  H 86

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 53.3 bits (127), Expect = 1e-07
 Identities = 8/74 (10%), Positives = 17/74 (22%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
             ++  PP              P+             +             P       +
Sbjct: 42  YGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQV 101

Query: 159 PRGVGSGDKVQRAP 172
           P  +G+  + Q+ P
Sbjct: 102 PVQMGTPLQQQQQP 115

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 52.1 bits (124), Expect = 3e-07
 Identities = 11/67 (16%), Positives = 14/67 (20%), Gaps = 4/67 (5%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            P  F PP  P+    +        G PP    P         P              S+
Sbjct: 25  QPAQFMPPQDPAAAGMSY----GQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSM 80

Query: 159 PRGVGSG 165
                  
Sbjct: 81  NDMHLHN 87

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.8 bits (123), Expect = 3e-07
 Identities = 5/61 (8%), Positives = 5/61 (8%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
                        G P               P                        P   
Sbjct: 33  QDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVD 92

Query: 159 P 159
           P
Sbjct: 93  P 93

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 10/75 (13%), Positives = 16/75 (21%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
              +     +        T +         P   P A   P  P   G P      P + 
Sbjct: 59  QQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAA 118

Query: 159 PRGVGSGDKVQRAPE 173
           P        + +   
Sbjct: 119 PAYGQPSAAMGQNMR 133

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 51.0 bits (121), Expect = 6e-07
 Identities = 13/136 (9%), Positives = 28/136 (20%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
           P        +     PA    +                  P   P     P  P   G+ 
Sbjct: 49  PQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTP 108

Query: 159 PRGVGSGDKVQRAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFL 218
            +            +        M+   +     L++         +     +      +
Sbjct: 109 LQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLTLPPPPLVIPPERM 168

Query: 219 LAVKADVETQGDFVQS 234
           L          D+++S
Sbjct: 169 LVPSELSNASPDYIRS 184

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 5/55 (9%), Positives = 6/55 (10%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
                 G  P G   +        P                        P     
Sbjct: 40  MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPN 94

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 8/67 (11%), Positives = 9/67 (13%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
                   P        G     +            AT           P   P      
Sbjct: 40  MSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQP 99

Query: 159 PRGVGSG 165
              V  G
Sbjct: 100 QVPVQMG 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 8e-07
 Identities = 6/67 (8%), Positives = 8/67 (11%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
               +     P  GA                                    P   P   +
Sbjct: 38  AGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYM 97

Query: 159 PRGVGSG 165
              V   
Sbjct: 98  QPQVPVQ 104

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.2 bits (119), Expect = 1e-06
 Identities = 5/57 (8%), Positives = 9/57 (15%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRG 161
            P +         +   +  +      PP    P         P             
Sbjct: 21  TPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQAT 77

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.4 bits (117), Expect = 2e-06
 Identities = 10/68 (14%), Positives = 14/68 (20%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
           P  +P+   P    A           PP GA P                          +
Sbjct: 22  PLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMN 81

Query: 165 GDKVQRAP 172
              +   P
Sbjct: 82  DMHLHNVP 89

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 6/61 (9%), Positives = 10/61 (16%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
              + +P        PA    +      P     P         P             + 
Sbjct: 20  ATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTS 79

Query: 159 P 159
            
Sbjct: 80  M 80

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 9/46 (19%), Positives = 12/46 (26%)

Query: 119 ANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
           ++      P      G    P   P    PP  P   G     +G 
Sbjct: 2   SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGM 47

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 44.0 bits (103), Expect = 9e-05
 Identities = 9/48 (18%), Positives = 10/48 (20%)

Query: 114 PAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRG 161
           P        + TP   P        P       G    PP       G
Sbjct: 10  PQAQLQYGQNATPLQQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMG 57

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 43.7 bits (102), Expect = 1e-04
 Identities = 9/60 (15%), Positives = 11/60 (18%), Gaps = 1/60 (1%)

Query: 113 APAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAP 172
                         P   P     PP  P            PP      +G    +  A 
Sbjct: 8   VYPQAQLQYGQNATPLQQPAQFM-PPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQ 66

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 53.3 bits (127), Expect = 3e-08
 Identities = 21/68 (30%), Positives = 23/68 (33%), Gaps = 7/68 (10%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAP--PPPPGATPPPPPP-----PPPGGPPPPPPPPGS 157
             PKP GG   G +  P  G+P     PP  G     P       P  GG   P      
Sbjct: 4   KRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWG 63

Query: 158 LPRGVGSG 165
            P G G G
Sbjct: 64  QPHGGGWG 71

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 46.4 bits (109), Expect = 5e-06
 Identities = 11/63 (17%), Positives = 12/63 (19%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
               P GG   G       G P               P   G   P            G 
Sbjct: 28  NRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQ 87

Query: 165 GDK 167
            +K
Sbjct: 88  WNK 90

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.6 bits (107), Expect = 9e-06
 Identities = 10/67 (14%), Positives = 10/67 (14%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
             R            P                 P G     P     G P          
Sbjct: 16  GSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHG 75

Query: 159 PRGVGSG 165
             G G G
Sbjct: 76  GGGWGQG 82

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 11/54 (20%), Positives = 14/54 (25%)

Query: 112 GAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
           G+           T  +  P  G+      PP  GG    P   G      G  
Sbjct: 1   GSKKRPKPGGGWNTGGSRYPGQGSPGGNRYPPQGGGGWGQPHGGGWGQPHGGGW 54

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 45.2 bits (106), Expect = 1e-05
 Identities = 12/67 (17%), Positives = 13/67 (19%), Gaps = 1/67 (1%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
            P   R PP+  GG                   P G      P     G P      G  
Sbjct: 24  SPGGNRYPPQGGGGWGQPHGGGWGQPHGGGWGQPHGG-GWGQPHGGGWGQPHGGGGWGQG 82

Query: 159 PRGVGSG 165
                  
Sbjct: 83  GTHGQWN 89

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 10/67 (14%), Positives = 13/67 (19%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
               +  P     G P G       G     P   G             P  P      +
Sbjct: 42  HGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMKHV 101

Query: 159 PRGVGSG 165
                +G
Sbjct: 102 AGAAAAG 108

>1dx0_A Prion protein; brain, repeat; NMR {Bos taurus} SCOP: d.6.1.1 PDB: 1dx1_A 1qlx_A 1qlz_A Length = 219

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 12/72 (16%), Positives = 14/72 (19%), Gaps = 4/72 (5%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPP----PPPPGSLPR 160
            P     G P G       G     P   G   P        G        P  P +  +
Sbjct: 40  QPHGGGWGQPHGGGWGQPHGGGWGQPHGGGWGQPHGGGGWGQGGTHGQWNKPSKPKTNMK 99

Query: 161 GVGSGDKVQRAP 172
            V          
Sbjct: 100 HVAGAAAAGAVV 111

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 52.0 bits (124), Expect = 7e-08
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 2/82 (2%)

Query: 80  RAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPP 139
                      +F    ++  +  +   +   G P G++              PGA P  
Sbjct: 143 VVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGG 202

Query: 140 PPPPPPGGP--PPPPPPPGSLP 159
              P P GP  PPPP P G   
Sbjct: 203 DRFPGPAGPGGPPPPFPAGQTH 224

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 48.2 bits (114), Expect = 1e-06
 Identities = 14/74 (18%), Positives = 20/74 (27%)

Query: 88  SKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGG 147
           +K   SQ E +  +  +       G       +  +  P             P      G
Sbjct: 148 NKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGGSSRAAFPQGGRGRGRFPGAVPGGDRFPG 207

Query: 148 PPPPPPPPGSLPRG 161
           P  P  PP   P G
Sbjct: 208 PAGPGGPPPPFPAG 221

>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C Length = 229

 Score = 45.5 bits (107), Expect = 1e-05
 Identities = 17/102 (16%), Positives = 28/102 (27%), Gaps = 14/102 (13%)

Query: 78  DDRAAESQTISKMKFSQIEKRPPRV--------------FRPPPKPSGGAPAGTNANPSS 123
              A+  + +  +   ++  + P V               R   +    +  G    P  
Sbjct: 120 GSEASSKKLMDLLPKRELHGQNPVVTPVNKQFLSQFEMQSRKTTQSGQMSGEGKAGPPGG 179

Query: 124 GTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
            +  A P         P   P G   P P  PG  P    +G
Sbjct: 180 SSRAAFPQGGRGRGRFPGAVPGGDRFPGPAGPGGPPPPFPAG 221

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 46/321 (14%), Positives = 100/321 (31%), Gaps = 111/321 (34%)

Query: 167 KVQRAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAVKA--- 223
                  ++E  Q L+ +    + +S    +SN        I  I+ +   LL  K    
Sbjct: 191 NCNSPETVLEMLQKLLYQ-IDPNWTSRSDHSSNIKLR----IHSIQAELRRLLKSKPYEN 245

Query: 224 ------DVE-----------------TQG----DFVQS-----LAAEVRAASFTTVEDLV 251
                 +V+                 T+     DF+ +     ++ +  + + T  E   
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305

Query: 252 VFVNWLDEELSFLVDERAVLKHFDWP---EGKADALREAA-----FEYQDLVKLEKQVSS 303
           + + +LD     L  E  +  +   P      A+++R+       +++ +  KL   + S
Sbjct: 306 LLLKYLDCRPQDLPRE-VLTTN---PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 304 FVD--DPGLPCESALKKMYKLLE------KVEQSVYALLRTRDMAISRYREFGIPVDWLL 355
            ++  +P        +KM+  L        +   + +L+                  W  
Sbjct: 362 SLNVLEPAE-----YRKMFDRLSVFPPSAHIPTILLSLI------------------W-- 396

Query: 356 DTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRFAFRVHQFAGGF 415
                  +  S V +       V  +L   S  EK+P    + +  +    +V       
Sbjct: 397 -----FDVIKSDVMV-------VVNKLHKYSLVEKQPKESTISIPSIYLELKVK------ 438

Query: 416 DAESMKAFEVLRSRVHKQTVE 436
             E+  A       +H+  V+
Sbjct: 439 -LENEYA-------LHRSIVD 451

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 46.8 bits (110), Expect = 1e-05
 Identities = 33/273 (12%), Positives = 72/273 (26%), Gaps = 65/273 (23%)

Query: 208 IGEIENK-----SSFLLAVKADVETQG--DFVQSLAAEVRAASFTTVE-DLVVFVNWLDE 259
            GE + +     S F  A   + + +   D  +S+         +  E D ++       
Sbjct: 11  TGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSI--------LSKEEIDHIIMSKDAVS 62

Query: 260 ELSFLVD--------------ERAVLKHFDW------PEGKADALREAAFEYQDLVKLEK 299
               L                E  +  ++ +       E +  ++    +  Q   +L  
Sbjct: 63  GTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQ-RDRLYN 121

Query: 300 QVSSFVDD--PGLPCESALKKMYKLLE-KVEQ------------SVYALLRTRDMAISRY 344
               F       L     L++   LLE +  +            +  AL       +   
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQ--ALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179

Query: 345 REFGIPVDWLLDTGVVGKIKLSSVQLARKYMKRVSTELEAMSRPEKEPNREFLLLQGVRF 404
            +F I   W L+       +     L +   +                 R   +   +R 
Sbjct: 180 MDFKI--FW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 405 AFRVHQFAGGF-------DAESMKAFEVLRSRV 430
             +   +           +A++  AF  L  ++
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFN-LSCKI 268

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 45.2 bits (106), Expect = 2e-06
 Identities = 18/53 (33%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPP----PPPPPGGPPPPPP 153
               P         A P +      PP  G +PPPP     PP  GG PPPP 
Sbjct: 54  SKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSPPPPS 106

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 19/43 (44%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 127 PAPPPPPGATPPPPPPPPP---GGPPPPPPPPGSLPRGVGSGD 166
                PPGATP PP   PP   GG P PP   GS P     G 
Sbjct: 52  DCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGS 94

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 39.8 bits (92), Expect = 2e-04
 Identities = 24/45 (53%), Positives = 24/45 (53%), Gaps = 5/45 (11%)

Query: 126 PPAPPPPPGATPPP-----PPPPPPGGPPPPPPPPGSLPRGVGSG 165
           P A P PPGA PPP     P PP  GG PPPP   GS P   GS 
Sbjct: 58  PGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGSP 102

>2kpy_A Major pollen allergen ART V 1; defensin-like, poly-proline; NMR {Artemisia vulgaris} Length = 108

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 19/50 (38%), Positives = 20/50 (40%), Gaps = 5/50 (10%)

Query: 121 PSSGTPPAPPPPPGATPPPP-----PPPPPGGPPPPPPPPGSLPRGVGSG 165
             S +PP   P P    PPP     P PP  G  PPPP  G  P   G  
Sbjct: 52  DCSKSPPGATPAPPGAAPPPAAGGSPSPPADGGSPPPPADGGSPPVDGGS 101

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 47.9 bits (113), Expect = 4e-06
 Identities = 18/112 (16%), Positives = 31/112 (27%), Gaps = 6/112 (5%)

Query: 110 SGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQ 169
               P G   +     PP PPP   +    P              P + P     G    
Sbjct: 15  MANLPNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPG---- 70

Query: 170 RAPELVEFYQTLMKREAKKDTSSLISSTSNTSDARSNMIGEIENKSSFLLAV 221
                   + + +    K+ T++  ++ S      S   G     +  LL +
Sbjct: 71  --SSGGGGFFSSLSNAVKQTTAAAAATFSEQVGGGSGGAGRGGAAARVLLVI 120

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 9/66 (13%), Positives = 10/66 (15%)

Query: 106 PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
           P              P          P  A               P  P      G G  
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 166 DKVQRA 171
             +  A
Sbjct: 79  SSLSNA 84

>1pk8_A RAT synapsin I; ATP binding, ATP grAsp, calcium (II) ION, membrane protein; HET: ATP; 2.10A {Rattus norvegicus} SCOP: c.30.1.5 d.142.1.3 PDB: 1px2_A* Length = 422

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 12/73 (16%), Positives = 18/73 (24%)

Query: 100 PRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P  +    +     P   +A     TP +            P   P  P P     G   
Sbjct: 19  PNGYMTDLQRPQPPPPPPSAASPGATPGSAAASAERASTAAPVASPAAPSPGSSGGGGFF 78

Query: 160 RGVGSGDKVQRAP 172
             + +  K   A 
Sbjct: 79  SSLSNAVKQTTAA 91

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 46.7 bits (110), Expect = 8e-06
 Identities = 16/98 (16%), Positives = 20/98 (20%), Gaps = 4/98 (4%)

Query: 75  QSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPG 134
            SH      S  + +          P            A            PP PP P  
Sbjct: 3   SSHHHHHHSSGLVPR----GSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAA 58

Query: 135 ATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAP 172
             PP               P G     +    +  R P
Sbjct: 59  GNPPDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQP 96

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 17/111 (15%), Positives = 22/111 (19%), Gaps = 1/111 (0%)

Query: 70  GDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAP 129
           G S    H       +    +  S         F     P    P      P +     P
Sbjct: 2   GSSHHHHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNP 61

Query: 130 PP-PPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVEFYQ 179
           P    G +        P GP      P          +    AP       
Sbjct: 62  PDTVTGDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRAV 112

>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A* Length = 433

 Score = 45.1 bits (106), Expect = 3e-05
 Identities = 25/105 (23%), Positives = 29/105 (27%), Gaps = 8/105 (7%)

Query: 64  EKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRP----PPKPSGGAPAGTNA 119
                SG     SH    + S T +   F      P  V  P    PP P+ G P  T  
Sbjct: 7   HHHHSSGLVPRGSHMVIPSASVTSAASDFLAALHPPVTVPDPAPPPPPAPAAGNPPDTVT 66

Query: 120 NPSSGTP----PAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
             S        P  P      P       PG   P   PP +   
Sbjct: 67  GDSVLQRILRGPTGPGTTSLAPAVRYGRQPGPEAPASAPPAAGRA 111

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 19/66 (28%), Positives = 20/66 (30%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGS 164
             P   G A A   AN    TP  P      T  P P        P PP P      V +
Sbjct: 6   TSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAGDNATVAA 65

Query: 165 GDKVQR 170
           G    R
Sbjct: 66  GHATLR 71

>3nwa_A GB, GB-1, GB1, envelope glycoprotein B; coiled-coil, membrane fusion, viral P glycoprotein B, HSV-1, membrane; HET: NAG; 2.26A {Human herpesvirus 1} PDB: 3nwf_A* 3nw8_A* 3nwd_A* Length = 703

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 16/57 (28%), Positives = 19/57 (33%), Gaps = 2/57 (3%)

Query: 106 PPKPSG-GAPAGTNANPS-SGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
           P  P+  G P    A  + +G P  P PP     P   P P     P  P P     
Sbjct: 2   PAAPTSPGTPGVAAATQAANGGPATPAPPALGAAPTGDPKPKKNKKPKNPTPPRPAG 58

>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1 Length = 138

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 120 NPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPP 152
           N  +       PPP ++PP    PPP  PPP P
Sbjct: 105 NVVAANATVSMPPPSSSPPSSVMPPPVMPPPSP 137

>1twf_A B220, DNA-directed RNA polymerase II largest subunit; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: e.29.1.2 PDB: 1i3q_A 1i6h_A 1k83_A* 1nik_A 1nt9_A 1pqv_A 1r5u_A 1r9s_A* 1r9t_A* 1sfo_A* 1twa_A* 1twc_A* 1i50_A* 1twg_A* 1twh_A* 1wcm_A 1y1v_A 1y1w_A 1y1y_A 1y77_A* ... Length = 1733

 Score = 44.7 bits (105), Expect = 6e-05
 Identities = 15/97 (15%), Positives = 23/97 (23%)

Query: 61   LLKEKPIVSGDSSDQSHDDRAAESQTISKMKFSQIEKRPPRVFRPPPKPSGGAPAGTNAN 120
            L+K  P       +   D         S +  + ++ +   +F P               
Sbjct: 1450 LVKYMPEQKITEIEDGQDGGVTPYSNESGLVNADLDVKDELMFSPLVDSGSNDAMAGGFT 1509

Query: 121  PSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
               G        P       P  P  G   P   P S
Sbjct: 1510 AYGGADYGEATSPFGAYGEAPTSPGFGVSSPGFSPTS 1546

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 43.4 bits (101), Expect = 1e-04
 Identities = 10/57 (17%), Positives = 15/57 (26%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPP 155
             R    PP     +P+    +P+     +        PPP  P           P 
Sbjct: 9   TVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPT 65

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 41.1 bits (95), Expect = 5e-04
 Identities = 9/55 (16%), Positives = 12/55 (21%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
              +   G P     +PS            +T       PP   P       S  
Sbjct: 8   ITVRSMEGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFA 62

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae} Length = 371

 Score = 40.3 bits (93), Expect = 8e-04
 Identities = 6/53 (11%), Positives = 12/53 (22%)

Query: 106 PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
              P+    + +    S             +  PPP  P            ++
Sbjct: 14  EGPPTVQQQSPSVIRQSPTQRRKTSTTSSTSRAPPPTNPDASSSSSSFAVPTI 66

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 10/68 (14%), Positives = 14/68 (20%), Gaps = 2/68 (2%)

Query: 110 SGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPG--GPPPPPPPPGSLPRGVGSGDK 167
                   +++         P   G   P       G  G P    P      G G G  
Sbjct: 2   GSSQHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGY 61

Query: 168 VQRAPELV 175
                 + 
Sbjct: 62  GSAGTSVT 69

>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis} Length = 157

 Score = 40.6 bits (95), Expect = 2e-04
 Identities = 11/73 (15%), Positives = 13/73 (17%), Gaps = 5/73 (6%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPP-----PPGGPPPPP 152
           +          P G                      GA     P P        G     
Sbjct: 5   QHHHHHSSGLVPRGSHMPQGGGYAEPAGRDYDYGQSGAPDYGQPAPGGYSGYGQGGYGSA 64

Query: 153 PPPGSLPRGVGSG 165
               +L    GSG
Sbjct: 65  GTSVTLQLDDGSG 77

>2yew_A Capsid protein, coat protein; alphavirus, molecular dynamics; 5.00A {Barmah forest virus} Length = 253

 Score = 41.9 bits (98), Expect = 2e-04
 Identities = 13/79 (16%), Positives = 19/79 (24%), Gaps = 1/79 (1%)

Query: 98  RPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
           +P     P  +          A   +           A   P   PPP       P   +
Sbjct: 25  QPQPPAPPRRRRGPSQLQQLVAALGALALQPKQKQKRAQKKPKKTPPPKPKKTQKPKKPT 84

Query: 158 LPRGVGSGDKVQRAPELVE 176
             +    G K  R    +E
Sbjct: 85  QKKKSKPG-KRMRNCMKIE 102

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 42.4 bits (100), Expect = 3e-04
 Identities = 16/57 (28%), Positives = 17/57 (29%), Gaps = 1/57 (1%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRG 161
           P PK + G P G         PP    P G         PPG   P        P G
Sbjct: 421 PGPKGAAGEP-GKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAG 476

>1y0f_A Collagen I alpha 1; native, in SITU, triple-helix, supermolecular, packing structure; 5.16A {Rattus norvegicus} SCOP: i.25.1.1 PDB: 1ygv_A 3hqv_A 3hr2_A Length = 1054

 Score = 41.2 bits (97), Expect = 6e-04
 Identities = 17/56 (30%), Positives = 18/56 (32%), Gaps = 2/56 (3%)

Query: 114 PAGTNANPSSGTPPAPPPPPGATPPPPPPPPPG--GPPPPPPPPGSLPRGVGSGDK 167
           P G    P        P PPGA  P       G  GPP P  P G       +G  
Sbjct: 423 PKGAAGEPGKAGERGVPGPPGAVGPAGKDGEAGAQGPPGPAGPAGERGEQGPAGSP 478

>1jvr_A HTLV-II MA, MA, human T-cell leukemia virus type II matrix protein; HTLV-II matrix protein, retroviral matrix protein; NMR {Human t-lymphotropic virus 2} SCOP: a.61.1.2 Length = 137

 Score = 39.9 bits (92), Expect = 3e-04
 Identities = 17/41 (41%), Positives = 17/41 (41%)

Query: 119 ANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
              S   P AP P P      PPPPPP  P    PPP   P
Sbjct: 91  NQVSPSAPAAPVPTPICPTTTPPPPPPPSPEAHVPPPYVEP 131

>2b5l_C Nonstructural protein V; DDB1, SV5-V, beta propeller, propeller cluster, zinc finger, protein binding/viral protein complex; 2.85A {Simian virus 5} PDB: 2hye_B* Length = 222

 Score = 41.1 bits (95), Expect = 3e-04
 Identities = 13/86 (15%), Positives = 21/86 (24%)

Query: 106 PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSG 165
                  +      +   G  P  P P  A  P      PG P P P           + 
Sbjct: 55  AEAKIQESTNHQKGSVGGGAKPKKPRPKIAIVPADDKTVPGKPIPNPLLGLDSTPSTQTV 114

Query: 166 DKVQRAPELVEFYQTLMKREAKKDTS 191
             +         Y+ +   +  K+  
Sbjct: 115 LDLSGKTLPSGSYKGVKLAKFGKENL 140

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 8/48 (16%), Positives = 12/48 (25%)

Query: 106 PPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPP 153
           P + +          P+     + P P  A P P     P        
Sbjct: 94  PSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIA 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.9 bits (98), Expect = 5e-04
 Identities = 18/94 (19%), Positives = 24/94 (25%), Gaps = 2/94 (2%)

Query: 117 TNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELVE 176
             +  ++   PA    P  TP    P P    P P              D+  +A  L+ 
Sbjct: 93  DPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEPVKASLLLH 152

Query: 177 --FYQTLMKREAKKDTSSLISSTSNTSDARSNMI 208
                 L K       S  I           N I
Sbjct: 153 VLVAHKLKKSLDSIPMSKTIKDLVGGKXTVQNEI 186

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 9/61 (14%), Positives = 12/61 (19%)

Query: 95  IEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPP 154
             K    ++  P      A        +    PA   P  A   P P             
Sbjct: 81  YSKDAKEIYYTPDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEI 140

Query: 155 P 155
            
Sbjct: 141 A 141

>2uv8_A Fatty acid synthase subunit alpha (FAS2); fatty acid biosynthesis, malonyl/palmitoyl transferase, phosphopantetheine, transferase; HET: GVL FMN; 3.10A {Saccharomyces cerevisiae} PDB: 2vkz_A* 3hmj_A* Length = 1887

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 11/53 (20%), Positives = 12/53 (22%)

Query: 107 PKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P PS  A     A   +  P      P      P P     P          P
Sbjct: 92  PDPSELAAKEEPAKEEAPAPTPAASAPAPAAAAPAPVAAAAPAAAAAEIADEP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 42.2 bits (99), Expect = 3e-04
 Identities = 13/50 (26%), Positives = 18/50 (36%)

Query: 105 PPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPP 154
              +P     A ++A+ +    PA P  P A P P P       P    P
Sbjct: 95  IEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>2uv9_A Fatty acid synthase alpha subunits; fungal, dehydratase, enoyl reductase, ketoacyl synthase, ketoacyl reductase; 3.1A {Thermomyces lanuginosus} PDB: 2uvb_A* Length = 1878

 Score = 41.5 bits (97), Expect = 6e-04
 Identities = 13/51 (25%), Positives = 13/51 (25%)

Query: 109 PSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLP 159
           P    P  T A  SS        P     P   P P      P  P    P
Sbjct: 94  PIEDEPEPTPAAASSADAAPAAAPAAPAAPAAAPAPAPASAGPAAPVQDAP 144

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 41.1 bits (95), Expect = 4e-04
 Identities = 10/66 (15%), Positives = 16/66 (24%)

Query: 99  PPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSL 158
             R ++     +         +P+S          G+ P   P             P S 
Sbjct: 239 DERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVST 298

Query: 159 PRGVGS 164
           P  V  
Sbjct: 299 PASVEY 304

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 40.7 bits (94), Expect = 6e-04
 Identities = 12/66 (18%), Positives = 16/66 (24%), Gaps = 3/66 (4%)

Query: 97  KRPPRVFRPPPKPSGGAPA---GTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPP 153
           +R     RP       +P     TN   S G+ P   P             P   P    
Sbjct: 244 QRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSETESVNPVSTPASVE 303

Query: 154 PPGSLP 159
               + 
Sbjct: 304 YHAGMK 309

>3a58_A Exocyst complex component SEC3; protein complex, PH domain, GTPase, membrane traffic, coiled coil, exocytosis, phosphoprotein; HET: GNP; 2.60A {Saccharomyces cerevisiae} Length = 320

 Score = 40.7 bits (94), Expect = 6e-04
 Identities = 2/68 (2%), Positives = 8/68 (11%)

Query: 92  FSQIEKRPPRVFRPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPP 151
           +                 +    + +     +            + P   P         
Sbjct: 231 WDLSLFYLDERSYQRAVITNRPGSVSPIKSPTSNFTTNTTQSVGSVPFSAPTERTRRSET 290

Query: 152 PPPPGSLP 159
                   
Sbjct: 291 ESVNPVST 298

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 41.5 bits (98), Expect = 5e-04
 Identities = 4/57 (7%), Positives = 7/57 (12%)

Query: 116 GTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAP 172
                 +                              P   +     G   +V   P
Sbjct: 77  DAPGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMP 133

>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428

 Score = 41.1 bits (97), Expect = 5e-04
 Identities = 3/48 (6%), Positives = 5/48 (10%)

Query: 110 SGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGS 157
            G                       +         P  P        +
Sbjct: 79  PGYENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPN 126

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* Length = 388

 Score = 40.8 bits (96), Expect = 6e-04
 Identities = 8/58 (13%), Positives = 10/58 (17%), Gaps = 3/58 (5%)

Query: 118 NANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPRGVGSGDKVQRAPELV 175
              P      A     G            G               G G  +Q A   +
Sbjct: 256 RQQPLDAKKSAKTTAAGTVTVLDQRTMASGQQAVAYLH---DIASGRGYPLQAAATRI 310

>4f6o_A Metacaspase-1; rossmann fold, hydrolase; HET: DFH; 1.68A {Saccharomyces cerevisiae} Length = 350

 Score = 40.7 bits (94), Expect = 6e-04
 Identities = 12/57 (21%), Positives = 16/57 (28%), Gaps = 5/57 (8%)

Query: 104 RPPPKPSGGAPAGTNANPSSGTPPAPPPPPGATPPPPPPPPPGGPPPPPPPPGSLPR 160
           +   + S G       NP+        PP   + PPP      G   P        R
Sbjct: 2   QAKAQLSNGYN-----NPNVNASNMYGPPQNMSLPPPQTQTIQGTDQPYQYSQCTGR 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	442
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	1e-04
d1jvra_	137	a.61.1.2 (A:) HTLV-II matrix protein {Human T-cell	1e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	8e-04
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.001
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.001
d2gqba1	130	a.282.1.1 (A:1-130) Hypothetical protein RPA2825 {	0.002

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00