Citrus Sinensis ID: 036790

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-
Protein Sequence
GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSESEMEFSDEVMSF
Secondary Structure (PSIPRED)
cccccccccccccccccccccccEEccccccHHHHHHHHHHHHHccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccEEccccccHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccHcccccccccccccEccc
Coil and Loop (DISEMBL)
gsvpaaepiaprlgvdypfpphleyayppvdgnILTNIVNALIAVPRFYTQVLHLMNkmnipapfrmalptpplpppvpaasapqpppvprsvpvqptpppiadlsssesemefsDEVMSF
Flexible Loop (DISEMBL)
gsvpaaepiaprlgVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIAdlsssesemefsdevmsf
Low Complexity Region (SEG)
GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMalptpplpppvpaasapqpppvprsvpvqptpppIADLsssesemefsdevmsf
Disordered region (IsUnstruct)
***********RLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF********************************************************
Disordered Region (DISOPRED)
******EPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALP***************************************************
Disordered Region (DISEMBL)
GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPP*****************PVQPTPPPIA******************
Disordered Region (DISPRO)
*SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPP*********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPFRMALPTPPLPPPVPAASAPQPPPVPRSVPVQPTPPPIADLSSSESEMEFSDEVMSF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	121	2.2.26 [Sep-21-2011]
Q96LT9	517	RNA-binding protein 40 OS	yes	no	0.537	0.125	0.553	5e-14
Q5R6C7	517	RNA-binding protein 40 OS	yes	no	0.537	0.125	0.553	5e-14
Q3MHP0	516	RNA-binding protein 40 OS	yes	no	0.471	0.110	0.614	1e-13
Q4G055	515	RNA-binding protein 40 OS	yes	no	0.471	0.110	0.614	1e-13
Q3UZ01	514	RNA-binding protein 40 OS	yes	no	0.471	0.110	0.614	1e-13

>sp|Q96LT9|RBM40_HUMAN RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 1   GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
           G +     IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194

Query: 61  IPAPF 65
           +P PF
Sbjct: 195 LPTPF 199

Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprises less than 1% of all non-coding sequences. Binds to the 3'-stem-loop of m(7)G-capped U12 snRNA.
Homo sapiens (taxid: 9606)

>sp|Q5R6C7|RBM40_PONAB RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1

 Score = 76.3 bits (186), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query: 1   GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
           G +     IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct: 135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194

Query: 61  IPAPF 65
           +P PF
Sbjct: 195 LPTPF 199

Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprises less than 1% of all non-coding sequences. Binds to the 3'-stem-loop of m(7)G-capped U12 snRNA.

Pongo abelii (taxid: 9601)

>sp|Q3MHP0|RBM40_BOVIN RNA-binding protein 40 OS=Bos taurus GN=RNPC3 PE=2 SV=1

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 9   IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199

Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprises less than 1% of all non-coding sequences. Binds to the 3'-stem-loop of m(7)G-capped U12 snRNA.

Bos taurus (taxid: 9913)

>sp|Q4G055|RBM40_RAT RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=2 SV=2

 Score = 75.1 bits (183), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 9   IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199

Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprises less than 1% of all non-coding sequences. Binds to the 3'-stem-loop of m(7)G-capped U12 snRNA.

Rattus norvegicus (taxid: 10116)

>sp|Q3UZ01|RBM40_MOUSE RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2

 Score = 74.7 bits (182), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query: 9   IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct: 143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199

Participates in pre-mRNA U12-dependent splicing, performed by the minor spliceosome which removes U12-type introns. U12-type introns comprises less than 1% of all non-coding sequences. Binds to the 3'-stem-loop of m(7)G-capped U12 snRNA.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
242035873	467	hypothetical protein SORBIDRAFT_01g03660	0.702	0.182	0.827	5e-33
115452785	467	Os03g0326600 [Oryza sativa Japonica Grou	0.595	0.154	0.930	1e-32
222624851	560	hypothetical protein OsJ_10687 [Oryza sa	0.595	0.128	0.930	1e-32
414866588	396	TPA: hypothetical protein ZEAMMB73_52992	0.603	0.184	0.904	4e-31
212721632	450	uncharacterized protein LOC100193767 [Ze	0.603	0.162	0.904	4e-31
357128643	455	PREDICTED: RNA-binding protein 40-like [	0.603	0.160	0.890	4e-31
255568988	450	RNA binding protein, putative [Ricinus c	0.545	0.146	0.954	4e-30
359477912	463	PREDICTED: RNA-binding protein 40-like [	0.561	0.146	0.911	9e-30
224123704	346	predicted protein [Populus trichocarpa]	0.561	0.196	0.942	1e-29
224144758	420	predicted protein [Populus trichocarpa]	0.553	0.159	0.925	2e-29

>gi|242035873|ref|XP_002465331.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor] gi|241919185|gb|EER92329.1| hypothetical protein SORBIDRAFT_01g036600 [Sorghum bicolor]

 Score =  144 bits (364), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 72/87 (82%), Positives = 77/87 (88%), Gaps = 2/87 (2%)

Query: 6   AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           AEPIAP+LGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMN+PAPF
Sbjct: 153 AEPIAPKLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYNQVLHLMNKMNLPAPF 212

Query: 66  RMALPTPPLPPPVPAASAPQPPPVPRS 92
           RMALPTPPLP  +P    P P P+P+S
Sbjct: 213 RMALPTPPLPSQLPV--TPHPQPLPQS 237

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115452785|ref|NP_001049993.1| Os03g0326600 [Oryza sativa Japonica Group] gi|108707928|gb|ABF95723.1| RNA recognition motif family protein, expressed [Oryza sativa Japonica Group] gi|113548464|dbj|BAF11907.1| Os03g0326600 [Oryza sativa Japonica Group] gi|218192743|gb|EEC75170.1| hypothetical protein OsI_11395 [Oryza sativa Indica Group]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%)

Query: 3   VPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 62
           + +AEPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMN+P
Sbjct: 150 ISSAEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNLP 209

Query: 63  APFRMALPTPPL 74
           APFRMALPTPPL
Sbjct: 210 APFRMALPTPPL 221

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222624851|gb|EEE58983.1| hypothetical protein OsJ_10687 [Oryza sativa Japonica Group]

 Score =  143 bits (360), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/72 (93%), Positives = 70/72 (97%)

Query: 3   VPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIP 62
           + +AEPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMN+P
Sbjct: 243 ISSAEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNLP 302

Query: 63  APFRMALPTPPL 74
           APFRMALPTPPL
Sbjct: 303 APFRMALPTPPL 314

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|414866588|tpg|DAA45145.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 68/73 (93%)

Query: 6   AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           AEPIAP+L VDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMN+PAPF
Sbjct: 136 AEPIAPKLSVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYNQVLHLMNKMNLPAPF 195

Query: 66  RMALPTPPLPPPV 78
           RMALPTPPLP  V
Sbjct: 196 RMALPTPPLPSQV 208

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|212721632|ref|NP_001132325.1| uncharacterized protein LOC100193767 [Zea mays] gi|194694084|gb|ACF81126.1| unknown [Zea mays] gi|414866589|tpg|DAA45146.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays] gi|414866590|tpg|DAA45147.1| TPA: hypothetical protein ZEAMMB73_529929 [Zea mays]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/73 (90%), Positives = 68/73 (93%)

Query: 6   AEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
           AEPIAP+L VDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMN+PAPF
Sbjct: 136 AEPIAPKLSVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYNQVLHLMNKMNLPAPF 195

Query: 66  RMALPTPPLPPPV 78
           RMALPTPPLP  V
Sbjct: 196 RMALPTPPLPSQV 208

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357128643|ref|XP_003565980.1| PREDICTED: RNA-binding protein 40-like [Brachypodium distachyon]

 Score =  138 bits (348), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 65/73 (89%), Positives = 68/73 (93%)

Query: 2   SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
           S   AEPIA +LGVDYPFPPHLEYAYPP DGNILTNIVN+LIAVPRFYTQVLHLMNKMN+
Sbjct: 139 STSTAEPIASKLGVDYPFPPHLEYAYPPPDGNILTNIVNSLIAVPRFYTQVLHLMNKMNL 198

Query: 62  PAPFRMALPTPPL 74
           PAPFRMALPTPPL
Sbjct: 199 PAPFRMALPTPPL 211

Source: Brachypodium distachyon

Species: Brachypodium distachyon

Genus: Brachypodium

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255568988|ref|XP_002525464.1| RNA binding protein, putative [Ricinus communis] gi|223535277|gb|EEF36954.1| RNA binding protein, putative [Ricinus communis]

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 63/66 (95%), Positives = 64/66 (96%)

Query: 2   SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
           SVPA+EPIAPRLGVDYPFPPHLEY YPP DGNILTNIVNALIAVPRFYTQVLHLMNKMNI
Sbjct: 125 SVPASEPIAPRLGVDYPFPPHLEYTYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 184

Query: 62  PAPFRM 67
           PAPFRM
Sbjct: 185 PAPFRM 190

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477912|ref|XP_002270244.2| PREDICTED: RNA-binding protein 40-like [Vitis vinifera] gi|298205172|emb|CBI17231.3| unnamed protein product [Vitis vinifera]

 Score =  134 bits (336), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 62/68 (91%), Positives = 65/68 (95%)

Query: 2   SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
           S+PA+EPIA RLG+DYPFPPHLEYAYPP DGNILTNIVNALIAVPRFY QVLHLMNKMNI
Sbjct: 136 SLPASEPIAARLGIDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYVQVLHLMNKMNI 195

Query: 62  PAPFRMAL 69
           PAPFRMAL
Sbjct: 196 PAPFRMAL 203

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224123704|ref|XP_002319145.1| predicted protein [Populus trichocarpa] gi|222857521|gb|EEE95068.1| predicted protein [Populus trichocarpa]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/69 (94%), Positives = 67/69 (97%), Gaps = 1/69 (1%)

Query: 1  GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQ-VLHLMNKM 59
          GS+PA+EPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQ VLHLMNKM
Sbjct: 17 GSLPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVVLHLMNKM 76

Query: 60 NIPAPFRMA 68
          NIPAPFRMA
Sbjct: 77 NIPAPFRMA 85

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224144758|ref|XP_002325403.1| predicted protein [Populus trichocarpa] gi|222862278|gb|EEE99784.1| predicted protein [Populus trichocarpa]

 Score =  132 bits (333), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 62/67 (92%), Positives = 64/67 (95%)

Query: 2   SVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 61
           S PA+EPIAPRLGVDYPFPPHLEYAYPP DGNILTNIVNALIAVPRFYTQVLHLMNKMNI
Sbjct: 144 SFPASEPIAPRLGVDYPFPPHLEYAYPPPDGNILTNIVNALIAVPRFYTQVLHLMNKMNI 203

Query: 62  PAPFRMA 68
           PAPFR+ 
Sbjct: 204 PAPFRIG 210

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	121
TAIR|locus:2195311	442	AT1G09230 [Arabidopsis thalian	0.553	0.151	0.746	5.9e-25
ZFIN|ZDB-GENE-060312-35	505	rnpc3 "RNA-binding region (RNP	0.537	0.128	0.575	4.2e-15
UNIPROTKB|F1PE39	518	RNPC3 "Uncharacterized protein	0.537	0.125	0.553	3.3e-14
UNIPROTKB|A8K1C9	516	RNPC3 "cDNA FLJ77710" [Homo sa	0.537	0.125	0.553	5.4e-14
UNIPROTKB|Q96LT9	517	RNPC3 "RNA-binding protein 40"	0.537	0.125	0.553	5.4e-14
MGI|MGI:1914475	514	Rnpc3 "RNA-binding region (RNP	0.471	0.110	0.614	6.9e-14
RGD|1582776	515	Rnpc3 "RNA-binding region (RNP	0.471	0.110	0.614	6.9e-14
UNIPROTKB|F1MJQ8	516	RNPC3 "RNA-binding protein 40"	0.471	0.110	0.614	6.9e-14
UNIPROTKB|Q3MHP0	516	RNPC3 "RNA-binding protein 40"	0.471	0.110	0.614	6.9e-14
UNIPROTKB|F1S572	517	LOC100522864 "Uncharacterized	0.471	0.110	0.614	6.9e-14

TAIR|locus:2195311 AT1G09230 [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 5.9e-25, P = 5.9e-25
 Identities = 50/67 (74%), Positives = 57/67 (85%)

Query:     1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
             G + + EPIAP+LG+DYPFPPHL+YAYPP D NIL NI NALIAVP  YTQVLHLMNKMN
Sbjct:   134 GQILSGEPIAPKLGIDYPFPPHLQYAYPPPDANILANITNALIAVPPLYTQVLHLMNKMN 193

Query:    61 IPAPFRM 67
             +P PFR+
Sbjct:   194 LPPPFRL 200

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

ZFIN|ZDB-GENE-060312-35 rnpc3 "RNA-binding region (RNP1, RRM) containing 3" [Danio rerio (taxid:7955)]

 Score = 199 (75.1 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 38/66 (57%), Positives = 48/66 (72%)

Query:     2 SVPAAEP-IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
             SVP  +  IAP LG+ +   P L+Y YPP    ILTNI + L++VP+FY QVLHLMNKMN
Sbjct:   122 SVPLMDTSIAPSLGLKFQTNPTLKYLYPPPSSGILTNITHTLLSVPKFYVQVLHLMNKMN 181

Query:    61 IPAPFR 66
             +P+PFR
Sbjct:   182 LPSPFR 187

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|F1PE39 RNPC3 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 191 (72.3 bits), Expect = 3.3e-14, P = 3.3e-14
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query:     1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
             G +     IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct:   136 GCITIENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 195

Query:    61 IPAPF 65
             +P PF
Sbjct:   196 LPTPF 200

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|A8K1C9 RNPC3 "cDNA FLJ77710" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query:     1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
             G +     IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct:   135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194

Query:    61 IPAPF 65
             +P PF
Sbjct:   195 LPTPF 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

UNIPROTKB|Q96LT9 RNPC3 "RNA-binding protein 40" [Homo sapiens (taxid:9606)]

 Score = 189 (71.6 bits), Expect = 5.4e-14, P = 5.4e-14
 Identities = 36/65 (55%), Positives = 43/65 (66%)

Query:     1 GSVPAAEPIAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMN 60
             G +     IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN
Sbjct:   135 GYLTVENGIAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMN 194

Query:    61 IPAPF 65
             +P PF
Sbjct:   195 LPTPF 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0006397 "mRNA processing" evidence=IEA

GO:0008380 "RNA splicing" evidence=IC

GO:0005689 "U12-type spliceosomal complex" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

MGI|MGI:1914475 Rnpc3 "RNA-binding region (RNP1, RRM) containing 3" [Mus musculus (taxid:10090)]

 Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query:     9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
             IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct:   143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003674 "molecular_function" evidence=ND

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISS

GO:0005689 "U12-type spliceosomal complex" evidence=ISO

GO:0008150 "biological_process" evidence=ND

RGD|1582776 Rnpc3 "RNA-binding region (RNP1, RRM) containing 3" [Rattus norvegicus (taxid:10116)]

 Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query:     9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
             IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct:   143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISO

GO:0005689 "U12-type spliceosomal complex" evidence=IEA;ISO

UNIPROTKB|F1MJQ8 RNPC3 "RNA-binding protein 40" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query:     9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
             IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct:   143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199

GO:0005689 "U12-type spliceosomal complex" evidence=IEA

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|Q3MHP0 RNPC3 "RNA-binding protein 40" [Bos taurus (taxid:9913)]

 Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query:     9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
             IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct:   143 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 199

GO:0005634 "nucleus" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

UNIPROTKB|F1S572 LOC100522864 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 188 (71.2 bits), Expect = 6.9e-14, P = 6.9e-14
 Identities = 35/57 (61%), Positives = 41/57 (71%)

Query:     9 IAPRLGVDYPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF 65
             IAP  G+ +P    L+Y YPP    IL NIVNAL +VP+FY QVLHLMNKMN+P PF
Sbjct:   145 IAPNHGLTFPLNSCLKYMYPPPSSTILANIVNALASVPKFYVQVLHLMNKMNLPTPF 201

GO:0003676 "nucleic acid binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: Sb01g036600.1 hypothetical protein (467 aa) (Sorghum bicolor)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	121
KOG4206	221	consensus Spliceosomal protein snRNP-U1A/U2B [RNA	85.76

>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]

Probab=85.76  E-value=0.2  Score=41.23  Aligned_cols=43  Identities=33%  Similarity=0.529  Sum_probs=38.7

Q ss_pred             cCCCCCccccCCCCCHHHHHHHHHHHHhCChhHHHHHHHHHhcCCCCCC
Q 036790           17 YPFPPHLEYAYPPVDGNILTNIVNALIAVPRFYTQVLHLMNKMNIPAPF   65 (121)
Q Consensus        17 ~p~pp~L~Y~YPpp~~~il~nI~~~L~~~p~FY~QVLHLMNkmnLppPF   65 (121)
                      .+.. .+.|+|++-+.+++.+|..-+..+..||.     ||+||+|+||
T Consensus        96 ~~~~-~~v~~~~k~~~~~~~~~~~~~~~ng~~~~-----~~~~~~p~p~  138 (221)
T KOG4206|consen   96 QAPG-TFVEKEKKINGEILARIKQPLDTNGHFYN-----MNRMNLPPPF  138 (221)
T ss_pred             ccCc-eeccccCccccccccccCCcccccccccc-----cccccCCCCc
Confidence            3344 78889999999999999999999999999     9999999999

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00