Citrus Sinensis ID: 036794
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1152 | 2.2.26 [Sep-21-2011] | |||||||
| Q89A95 | 370 | DNA polymerase III subuni | yes | no | 0.241 | 0.751 | 0.311 | 6e-39 | |
| P09122 | 563 | DNA polymerase III subuni | yes | no | 0.251 | 0.515 | 0.288 | 9e-38 | |
| P74876 | 642 | DNA polymerase III subuni | yes | no | 0.250 | 0.450 | 0.296 | 4e-35 | |
| P06710 | 643 | DNA polymerase III subuni | N/A | no | 0.244 | 0.438 | 0.300 | 1e-34 | |
| P57553 | 361 | DNA polymerase III subuni | yes | no | 0.237 | 0.759 | 0.312 | 1e-34 | |
| P43746 | 688 | DNA polymerase III subuni | yes | no | 0.217 | 0.363 | 0.314 | 2e-33 | |
| P75177 | 681 | DNA polymerase III subuni | yes | no | 0.247 | 0.418 | 0.291 | 3e-33 | |
| P47658 | 597 | DNA polymerase III subuni | yes | no | 0.252 | 0.487 | 0.307 | 1e-32 | |
| Q8K983 | 363 | DNA polymerase III subuni | yes | no | 0.237 | 0.754 | 0.287 | 6e-32 | |
| P63975 | 578 | DNA polymerase III subuni | yes | no | 0.190 | 0.378 | 0.307 | 1e-25 |
| >sp|Q89A95|DPO3X_BUCBP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) GN=dnaX PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 163 bits (413), Expect = 6e-39, Method: Composition-based stats.
Identities = 89/286 (31%), Positives = 166/286 (58%), Gaps = 8/286 (2%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF D++GQ + A+SN+++ ++ ++F+G GTGKT+ ARI A++LNC+
Sbjct: 6 LAKKWRPQTFNDVIGQQYIVSAISNSLLLGRIHHAWLFFGIRGTGKTTIARILAKSLNCK 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P PC C++C+ ++G ++ EV E + +LLDN+ +++I++
Sbjct: 66 LGISPNPCRKCSNCVEVEQGNFIDLYEVDAASRTKVEDMKELLDNIRYLPSKGRFKIYLI 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS S++ + K ++ P+ + FIL +++L+ +P I+SRC +F + +I+
Sbjct: 126 DEVHMLSRYSFNFLLKNIEEPPQHIKFILATTNLEKIPDTILSRCLQFQLKPINLNEIVA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLIS 649
+ I KE I + AL LI+ +S+GSLRDA EQ+ +G+ I+ +V++ +G++
Sbjct: 186 CISNILHKENITYEIKALSLISQKSEGSLRDAITLTEQMISMGKGNITEKIVRKTLGMLY 245
Query: 650 DEKLVDLLDLALSADTVNTVKNLRVIMETG-------VEPLALMSQ 688
+++++ +L L+ D N V + I +T VE L L+ Q
Sbjct: 246 EDQILYILTTLLNKDLKNLVLCFKYISDTHINFENILVEILQLLHQ 291
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Buchnera aphidicola subsp. Baizongia pistaciae (strain Bp) (taxid: 224915) EC: 2EC: .EC: 7EC: .EC: 7EC: .EC: 7 |
| >sp|P09122|DPO3X_BACSU DNA polymerase III subunit gamma/tau OS=Bacillus subtilis (strain 168) GN=dnaX PE=3 SV=3 | Back alignment and function description |
|---|
Score = 159 bits (403), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 156/291 (53%), Gaps = 1/291 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I E +++++ +L++IAS +DG +RDA L+Q +S G + V + G
Sbjct: 183 IVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S + L + + ++ L +++ G +P L+ + D+L
Sbjct: 243 AVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDML 293
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. Bacillus subtilis (strain 168) (taxid: 224308) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P74876|DPO3X_SALTY DNA polymerase III subunit tau OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaX PE=3 SV=2 | Back alignment and function description |
|---|
Score = 150 bits (380), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/290 (29%), Positives = 159/290 (54%), Gaps = 1/290 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPAHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L++ +DGSLRDA +Q G ++S V ++G
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLSRAADGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
+ D++ + L++ + A+ + + G+E AL+ ++ +++ I
Sbjct: 243 TLDDDQALSLVEAVVDANGERVMSLINEAAARGIEWEALLVEMLSLLHRI 292
|
Isoform gamma: chain seems to interact with the delta subunit to transfer the beta subunit on the DNA. Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) (taxid: 99287) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P06710|DPO3X_ECOLI DNA polymerase III subunit tau OS=Escherichia coli (strain K12) GN=dnaX PE=1 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/283 (30%), Positives = 155/283 (54%), Gaps = 1/283 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I + L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 183 IRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689
+ D++ + L++ + A+ + + G+E AL+ ++
Sbjct: 243 TLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEM 285
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Isoform gamma: seems to interact with the delta subunit. to transfer the beta subunit on the DNA. Escherichia coli (strain K12) (taxid: 83333) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P57553|DPO3X_BUCAI DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/275 (31%), Positives = 151/275 (54%), Gaps = 1/275 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ FRD++GQ + A+SN + ++ ++ G G GKT+ AR+ A++L
Sbjct: 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGIGKTTIARLLAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ+ PC C C ++G ++ E+ E + ++LD++ S S++++
Sbjct: 63 NCQNGITSDPCRQCIICKEIEKGLCLDVIEIDGASRTKVEEMREILDSIYYSPIKSRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ +D +P IISRC F + +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEHVKFVLATTDVDRIPKTIISRCLYFKLQIISEEK 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L++I KE I+ D+ +LK IA + GS+RDA LE LG +++ V +++G
Sbjct: 183 IFKFLKYILIKESIDTDEYSLKKIAYHAHGSIRDALNLLEHAINLGNGHVNIKNVTDMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
L+ ++ L D L D+ T+ L I GVE
Sbjct: 243 LLPEKYSFLLTDAVLKKDSKKTMLLLNKISSIGVE 277
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) (taxid: 107806) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P43746|DPO3X_HAEIN DNA polymerase III subunit tau/gamma OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (367), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 79/251 (31%), Positives = 136/251 (54%), Gaps = 1/251 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ + AL+N + ++ Y+F G G GKTS AR+FA+ L
Sbjct: 3 YQVLARKWRPKTFADVVGQEHIITALANGLKDNRLHHAYLFSGTRGVGKTSIARLFAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC PCG C +C + ++G ++ E+ E +LLDN+ ++++
Sbjct: 63 NCVHGVTATPCGECENCKAIEQGNFIDLIEIDAASRTKVEDTRELLDNVQYKPVVGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F + +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKALDETQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVG 646
I L I ++E I + AL +A + GS+RD+ +Q +G R ++ +V ++G
Sbjct: 183 ISQHLAHILTQENIPFEDPALVKLAKAAQGSIRDSLSLTDQAIAMGDRQVTNNVVSNMLG 242
Query: 647 LISDEKLVDLL 657
L+ D VD+L
Sbjct: 243 LLDDNYSVDIL 253
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) (taxid: 71421) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P75177|DPO3X_MYCPN DNA polymerase III subunit gamma/tau OS=Mycoplasma pneumoniae (strain ATCC 29342 / M129) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 84/288 (29%), Positives = 150/288 (52%), Gaps = 3/288 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L QKY P F D VGQ+ + + + NA+ + ++ Y+F G GTGKT+ A+I A+A+NC
Sbjct: 5 LYQKYRPTKFSDTVGQDSIKRIIVNAITQDQLPHGYIFAGERGTGKTTFAKIIAKAINCL 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ C C +C + + + ++ E+ I +L +N+ + ++++
Sbjct: 65 NWNG-DVCNQCEACQAINSNSAIDVFEIDAASKNGINDIRELAENVFNLPFKFKKKVYIL 123
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+P SWS + K ++ AP V+FI ++ + +P I+SRCQ FFF ++ + I
Sbjct: 124 DEAHMLTPQSWSGLLKTLEEAPDYVLFIFATTEFNKIPITILSRCQSFFFKQITNDLIQQ 183
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ--RISVPLVQELVGLI 648
L +A+KE I+I DAL +A + GSLRD L+Q+S + IS+ V++ L+
Sbjct: 184 RLAEVAAKESIKITTDALVKLADLAQGSLRDGLSLLDQISNFSESKTISLADVEKTFNLL 243
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
E+ ++ LS D + + G+ + + +L + D+
Sbjct: 244 DKEQKFGFIEAVLSGDLKQSFHLIDNFESQGINFVHFLRELFALTVDL 291
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Mycoplasma pneumoniae (strain ATCC 29342 / M129) (taxid: 272634) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P47658|DPO3X_MYCGE DNA polymerase III subunit gamma/tau OS=Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) GN=dnaX PE=3 SV=3 | Back alignment and function description |
|---|
Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 90/293 (30%), Positives = 149/293 (50%), Gaps = 2/293 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ QKY P F+ +GQ + + L NA+ R K+ Y+F G GTGKT+ A+I A+A+
Sbjct: 2 HQVFYQKYRPINFKQTLGQESIRKILVNAINRDKLPNGYIFSGERGTGKTTFAKIIAKAI 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +Q C C+ C S + + +I E+ I +L++N+ + ++
Sbjct: 62 NCLNWDQIDVCNSCDVCKSINTNSAIDIVEIDAASKNGINDIRELVENVFNHPFTFKKKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ SW + K ++ +P V+FI ++ + +P I+SRCQ FFF K+
Sbjct: 122 YILDEAHMLTTQSWGGLLKTLEESPPYVLFIFTTTEFNKIPLTILSRCQSFFFKKITSDL 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELV 645
I+ L IA KE I+I+KDAL IA S GSLRD L+Q+S ++IS+ V++
Sbjct: 182 ILERLNDIAKKEKIKIEKDALIKIADLSQGSLRDGLSLLDQISNFSDSEKISITDVEKTF 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA 698
++ + LS D L G+ + +L + ++ A
Sbjct: 242 NIVDRNAKFTFIKAVLSGDIKEAFNLLDDFESNGLNFTYFLRELFALTVNLYA 294
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Mycoplasma genitalium (strain ATCC 33530 / G-37 / NCTC 10195) (taxid: 243273) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|Q8K983|DPO3X_BUCAP DNA polymerase III subunit gamma OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats.
Identities = 79/275 (28%), Positives = 147/275 (53%), Gaps = 1/275 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P++F+ ++GQ + +A+SN K+ ++ G G GKT+ AR+ A++L
Sbjct: 3 YQILARKWRPQSFKKIIGQKYIVKAISNGFSLGKIHHAWLLSGTRGVGKTTIARLIAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C C ++G + E+ E I ++LDN+ + S++++
Sbjct: 63 NCEIGITSLPCRKCTICQEIEKGICLDFIEIDAASRTKVEEIREILDNIYYTPSKSRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P+ + FIL ++ ++ +P I SRC F + + D
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTIRSRCLHFKLNILSEED 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I L+ I K G D++ALK+I+ ++GS+RDA LE + L I++ E++G
Sbjct: 183 IFNFLKHILKKGGNNFDEEALKIISDYANGSMRDALNLLEHAMHLSKNNINLKNTTEMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
+ + + L L D+ + L I + G+E
Sbjct: 243 IPNKKHAFLLTKFLLEQDSKKMMCLLNKISKIGLE 277
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) (taxid: 198804) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
| >sp|P63975|DPO3X_MYCTU DNA polymerase III subunit gamma/tau OS=Mycobacterium tuberculosis GN=dnaX PE=3 SV=1 | Back alignment and function description |
|---|
Score = 119 bits (298), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 68/221 (30%), Positives = 111/221 (50%), Gaps = 2/221 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P +F ++VGQ V LS A+ ++ Y+F GP G GKTS ARI AR+LNC
Sbjct: 3 LYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLNCA 62
Query: 471 SLEQPKPCGFCNSCIS--HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
PCG C SC+S + S ++ E+ + + +L D + S+YR+F
Sbjct: 63 QGPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPVQSRYRVF 122
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
+ D+ ++ ++A+ K+V+ P ++FI ++ + + I SR + F + +
Sbjct: 123 IVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPRTM 182
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629
L I +EG+ +D L+ GS RD L+QL
Sbjct: 183 RALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL 223
|
DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity. Mycobacterium tuberculosis (taxid: 1773) EC: 2 EC: . EC: 7 EC: . EC: 7 EC: . EC: 7 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1152 | ||||||
| 224116784 | 1190 | predicted protein [Populus trichocarpa] | 0.967 | 0.936 | 0.694 | 0.0 | |
| 224079031 | 1188 | predicted protein [Populus trichocarpa] | 0.966 | 0.936 | 0.684 | 0.0 | |
| 225443722 | 1161 | PREDICTED: uncharacterized protein LOC10 | 0.945 | 0.937 | 0.673 | 0.0 | |
| 255562516 | 1105 | replication factor C / DNA polymerase II | 0.898 | 0.936 | 0.674 | 0.0 | |
| 356557765 | 1191 | PREDICTED: uncharacterized protein LOC10 | 0.968 | 0.937 | 0.652 | 0.0 | |
| 357447087 | 1177 | DNA polymerase III subunit gamma/tau [Me | 0.951 | 0.931 | 0.626 | 0.0 | |
| 449433559 | 1120 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.944 | 0.626 | 0.0 | |
| 449479207 | 1120 | PREDICTED: uncharacterized protein LOC10 | 0.918 | 0.944 | 0.626 | 0.0 | |
| 307136186 | 1170 | DNA polymerase III gamma-tau subunit [Cu | 0.931 | 0.917 | 0.629 | 0.0 | |
| 334186680 | 1097 | AAA-type ATPase family protein [Arabidop | 0.886 | 0.930 | 0.578 | 0.0 |
| >gi|224116784|ref|XP_002317391.1| predicted protein [Populus trichocarpa] gi|222860456|gb|EEE98003.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1576 bits (4082), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 852/1227 (69%), Positives = 948/1227 (77%), Gaps = 112/1227 (9%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MT+AVR RILKDANGDI DHLRNHIHLTNCIHLKNHM K SPILADRS++RDL+ LQRSR
Sbjct: 1 MTKAVRTRILKDANGDIGDHLRNHIHLTNCIHLKNHMLKQSPILADRSLIRDLIALQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLLPKKGD D IREGR SVG ERRR+ RL GSS N
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLPKKGDTDATIREGRSSVGTERRREGRRLFGSSSPSANLA 120
Query: 121 TSKVAPVN-------GVAGVEIEMI------------EELGEKN------------LVER 149
SKV P + GVA + I EE +K+ L ++
Sbjct: 121 PSKVVPSDVSGGNNDGVAAISDRSINSGFRDGRRVKREESSKKSNRVNQLGGDGDPLQDQ 180
Query: 150 A--GLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGS 192
A GLI KG+ +QDV +KTLSEQLH+IPMD+D + SSN+ G
Sbjct: 181 AVDGLIHDTVSGNSESKDRKSKHKGKHSQDVHIKTLSEQLHEIPMDTD-VASSNMHLHGR 239
Query: 193 RSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRAR-TASALRDVGGQSEMSVASNSLAQ 251
+ EK E IRGY G+HRV+RRKFR RR R +A A RDVGGQ EMSVASNS AQ
Sbjct: 240 HTRQEKIVEPETSIRGY-GGVHRVRRRKFRSTRRTRASAPASRDVGGQKEMSVASNSFAQ 298
Query: 252 GLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSD 311
G A P+YHMEEE EYG++NVTRAPRNGCGIPWNWS IHHRGKT LD+AGRSL SCGLSD
Sbjct: 299 GSARPRYHMEEE--EYGDQNVTRAPRNGCGIPWNWSGIHHRGKTILDIAGRSL-SCGLSD 355
Query: 312 SRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSG 370
+R K ASH R+ P MP+ SDRSSSST S EALPLLVEASGSQ ST++AGWVHDYSG
Sbjct: 356 TR--KGSTASHGRDFPGMPVASDRSSSSTKSDVEALPLLVEASGSQESTDNAGWVHDYSG 413
Query: 371 ELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVA 430
ELGI+ADHLLK+ +DSDLASE RSG Q+ LG N+NGRHQNLTQ+YMPRTFRDLVGQNL A
Sbjct: 414 ELGIYADHLLKNDIDSDLASEARSGEQRKLGRNQNGRHQNLTQRYMPRTFRDLVGQNLAA 473
Query: 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490
QALSNA +RRKVG LYVFYGPHGTGKTSCARIF+RALNCQSLE PKPCG+CNSCISHD G
Sbjct: 474 QALSNAAVRRKVGFLYVFYGPHGTGKTSCARIFSRALNCQSLEHPKPCGYCNSCISHDMG 533
Query: 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550
KSRNI+EVGPV NFDF+SI+DLLDNM+ S+ PSQYR+F+FDDCDTL+PD WSAISKV+DR
Sbjct: 534 KSRNIREVGPVSNFDFKSIIDLLDNMIISQTPSQYRVFIFDDCDTLAPDCWSAISKVIDR 593
Query: 551 APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610
APRRVVF+LV SSLD LPHIIISRCQKFFFPK+KDADIIYTLQWI+SKE I+IDKDALKL
Sbjct: 594 APRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKL 653
Query: 611 IASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 670
IASRSDGSLRDAEMTLEQLSLLGQ+ISVPLVQELVGLISDEKLVDLLDLA+SADTVNTVK
Sbjct: 654 IASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLAISADTVNTVK 713
Query: 671 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQAL 730
NLRVIMETGVEPLALMSQLATVITDILAGSYDFTK+R RRKFFRR PLSK++MEKLRQAL
Sbjct: 714 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRNPLSKDDMEKLRQAL 773
Query: 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMT 790
KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSS +TSF+HSPL L N GGR +
Sbjct: 774 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSSTETSFNHSPLALNNMGGRDIA 833
Query: 791 RKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMA----- 845
RKGGER E+ N + G+ +VRLEN S +F + GI++DRKR+ SGMA
Sbjct: 834 RKGGERVEMPNNKRGLSTHVRLENLPGGTSANFQNSGSTNGINMDRKRNAASGMASQWTS 893
Query: 846 LQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ 905
+Q + GR VSG SR G EEIWLEVL +IQ N +EFLY+EGKLISVSFGAAPTVQ
Sbjct: 894 VQTSDAVRVNGRQVSGKSRKGHEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQ 953
Query: 906 LTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGS 965
L F SHLTK KAEKF+ ILQAFESVLGSP+TIEIRCE +T AGFHLP ASK GS
Sbjct: 954 LIFSSHLTKLKAEKFRAHILQAFESVLGSPVTIEIRCELNKETNAGFHLP---AASKIGS 1010
Query: 966 SQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPA 1025
SQM +DSE G+R P G +SLE GR+EIVE+PA
Sbjct: 1011 SQMAMDSEPNAGSRMPRTG--------------------------DSLE-GRSEIVEIPA 1043
Query: 1026 SPR--ETKDHAENRADYSKR------------------ASLSERKKLGEQSQCQSIVRSK 1065
SPR E + A + + S+R S+ ER+ LGE SQ +SIVRSK
Sbjct: 1044 SPRKYEGNEPANHNVESSRRGLQRTWAGESVSNKKPAMGSMVERRILGEPSQSKSIVRSK 1103
Query: 1066 VSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICR 1125
VSLAHVIQQAEGCTQ+ WSK KAVSIAEKLEQENLRLEPRSRSLLCWKA++VTRRK+ R
Sbjct: 1104 VSLAHVIQQAEGCTQQAEWSKHKAVSIAEKLEQENLRLEPRSRSLLCWKATRVTRRKLSR 1163
Query: 1126 LKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
+KIR RKP SLLKLVSCGKCLSSK PR
Sbjct: 1164 MKIRTRKPRSLLKLVSCGKCLSSKPPR 1190
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224079031|ref|XP_002305724.1| predicted protein [Populus trichocarpa] gi|222848688|gb|EEE86235.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1548 bits (4008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 840/1227 (68%), Positives = 935/1227 (76%), Gaps = 114/1227 (9%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MT+AVR RILKDANGDI DHLRNHIHLTNCIHLKNHM K SPILADRS+MRDL+ LQRSR
Sbjct: 1 MTKAVRTRILKDANGDIGDHLRNHIHLTNCIHLKNHMLKQSPILADRSLMRDLITLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLLPKKGD D IREGR SVG ERRR+ RLSG+SP + N
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLPKKGDPDAAIREGRSSVGTERRREGRRLSGTSPPLANLA 120
Query: 121 TSKVAP------VNGVAGVEIEMI-------------EEL-----------GEKNLVERA 150
SKV P ++GVA + + EE G+++L++
Sbjct: 121 PSKVVPSDISLGIDGVAAISDRSVKSGIRDGRRVVTREEFSRKSNRADLLGGDEDLLQDH 180
Query: 151 GLIFW------------------KGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGS 192
+ + KG+ +QD+ +KTLSEQL++IP SD + SSN+ G
Sbjct: 181 AVNSFIHEAVSGNSESKDRKSKHKGKHSQDMHIKTLSEQLNEIPRGSD-VASSNMHLHGR 239
Query: 193 RSGLEKTGEEHGGIRGYSNGLHRVKRRKFRGARRARTASALR-DVGGQSEMSVASNSLAQ 251
+ +K GE + GYS G++RVKRRKFR ARR R A+ D GGQ EMSVASNS AQ
Sbjct: 240 HTQQQKIGEHETSVSGYS-GVNRVKRRKFRNARRTRAAAPASRDAGGQKEMSVASNSFAQ 298
Query: 252 GLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSD 311
G A P+YHMEEE EYG++NVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRS SCGLSD
Sbjct: 299 GPAQPRYHMEEE--EYGDQNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSF-SCGLSD 355
Query: 312 SRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGS-QSTEHAGWVHDYSG 370
SR + G SH R+ P MP+ SD S+SST S EALPLLVEASGS +ST++AGWVHDYSG
Sbjct: 356 SR--RDGTFSHGRDFPGMPVASDHSTSSTKSDVEALPLLVEASGSHESTDNAGWVHDYSG 413
Query: 371 ELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVA 430
ELGI+ADHLLK+ VDS E RS Q LG N NGRHQNLTQKYMPRTFRDLVGQNLVA
Sbjct: 414 ELGIYADHLLKNDVDS----EARSSEQCKLGQNHNGRHQNLTQKYMPRTFRDLVGQNLVA 469
Query: 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490
QALSNAV RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE PKPCGFCNSCISHD G
Sbjct: 470 QALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHPKPCGFCNSCISHDMG 529
Query: 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550
KSRNI+EVGPV NFDFESI+DLLDNM+ + PS YR+F+FDDCD+LSPD WSAI KV+DR
Sbjct: 530 KSRNIREVGPVSNFDFESIMDLLDNMIVYQIPSLYRVFIFDDCDSLSPDCWSAILKVIDR 589
Query: 551 APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610
APRRVVF+LV SSLD LPHIIISRCQKFFFPK+KDADIIYTLQWI+SKE I+IDKDALKL
Sbjct: 590 APRRVVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWISSKEDIDIDKDALKL 649
Query: 611 IASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 670
IASRSDGSLRDAEMTLEQLSLLGQ+ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK
Sbjct: 650 IASRSDGSLRDAEMTLEQLSLLGQKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 709
Query: 671 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQAL 730
NLRVIMETGVEPLALMSQLATVITDILAGSYDFTK+R RRKFFRR+PLSKE+MEKLRQAL
Sbjct: 710 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKERPRRKFFRRKPLSKEDMEKLRQAL 769
Query: 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMT 790
KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSS +TSF+HSPL N GGR ++
Sbjct: 770 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLLPSSSTETSFNHSPLAQNNMGGRDIS 829
Query: 791 RKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMA----- 845
RKGGE E+ N +PM+VRLE+ S DF + G S+DRKR+ S MA
Sbjct: 830 RKGGEH-EMPNNGRDLPMHVRLESLPGGTSADFRNNGSTNGTSIDRKRNAASVMAPQWTP 888
Query: 846 LQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ 905
+Q + R VSG S G EEIWLEVL +IQ N +EFLY+EGKLISVSFGAAPTVQ
Sbjct: 889 VQTSDAIRVNSRQVSGKSHKGYEEIWLEVLEKIQINSMREFLYQEGKLISVSFGAAPTVQ 948
Query: 906 LTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGS 965
L F SH TK KAEKF+ ILQAFESVLGSP+TIEIRCES +T AGF +PL+LPASK+GS
Sbjct: 949 LIFSSHFTKLKAEKFRAHILQAFESVLGSPVTIEIRCESNKETSAGFRVPLILPASKNGS 1008
Query: 966 SQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPA 1025
SQM ID G+R P G + LE GR+EIVEVP
Sbjct: 1009 SQMAIDPVLNAGSRMPRTG--------------------------DYLE-GRSEIVEVPT 1041
Query: 1026 SPR--ETKDHAENRADYSKR------------------ASLSERKKLGEQSQCQSIVRSK 1065
SPR E + + + S+R SL ER+KLGE SQ +SIVRSK
Sbjct: 1042 SPRKYEGNEPTNHNVESSRRGLQHTRAGESVSNKKPAVGSLVERRKLGETSQSKSIVRSK 1101
Query: 1066 VSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICR 1125
VSLA VIQQAEGCTQ+ GWSK KAVSIAEKLEQENLRLEPRSR LLCWKA++VTRRK+ R
Sbjct: 1102 VSLARVIQQAEGCTQQAGWSKHKAVSIAEKLEQENLRLEPRSRCLLCWKATRVTRRKLSR 1161
Query: 1126 LKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
L IR RKP SLLKLVSCGKCLSSKSPR
Sbjct: 1162 LNIRTRKPHSLLKLVSCGKCLSSKSPR 1188
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225443722|ref|XP_002265273.1| PREDICTED: uncharacterized protein LOC100249702 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1548 bits (4008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1224 (67%), Positives = 925/1224 (75%), Gaps = 135/1224 (11%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPS SPPSWHSPSV+DLL KK +ND + REGRRSVGIERRR+ RLSGSSP + +
Sbjct: 61 SLRDPSTSPPSWHSPSVIDLLSKKVENDAVSREGRRSVGIERRREGRRLSGSSPTVASLA 120
Query: 121 TSKVAP------VNGVAGVE---------------------------------------- 134
TSKVAP NG+A +
Sbjct: 121 TSKVAPGEVVGGNNGIAAMSERSGKSGLRDGRRIKREESSRRSMRTDLLGGYEEPSQDQD 180
Query: 135 -IEMIEELGEKNLVERAGLIFWKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSR 193
+ + EL N + + KG+ Q+V +KTLSEQL + P+DSD SS++ G R
Sbjct: 181 GNDSVNELVSGNSESKDKRVKQKGKLRQEVLLKTLSEQLKEFPVDSD-AASSHIHLQGRR 239
Query: 194 SGLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQG 252
+ E+TGEE IRGY +GL+R+K+RKFRGARR R A LRD+G Q+E+SVASNS AQG
Sbjct: 240 TRKERTGEEPEASIRGYCSGLNRIKKRKFRGARRNRAAIGLRDIGAQNELSVASNSFAQG 299
Query: 253 LACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDS 312
C K MEEE EEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL SCGLSDS
Sbjct: 300 SVCLKNEMEEEREEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL-SCGLSDS 358
Query: 313 RIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGE 371
R+R+ G R+V DMP+ SD SS+ST S AEALPLLVEASGSQ STE+A WVHDYSGE
Sbjct: 359 RLRRGGSVPQGRDVSDMPMASDHSSASTKSDAEALPLLVEASGSQESTENAAWVHDYSGE 418
Query: 372 LGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQ 431
LGIFAD+LL+H +DSDLASE RSG Q+ R RHQNLTQKYMPRTF LVGQNLVAQ
Sbjct: 419 LGIFADNLLRHDIDSDLASEARSGDQRKFRGYRQDRHQNLTQKYMPRTFGGLVGQNLVAQ 478
Query: 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491
ALSNAV++RKVG LYVFYGPHGTGKTSCARIFARALNC S+E PKPCGFCNSCI+HD GK
Sbjct: 479 ALSNAVVKRKVGFLYVFYGPHGTGKTSCARIFARALNCPSMEHPKPCGFCNSCIAHDMGK 538
Query: 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551
SRNI+EVGPV N DFE I++LLDN++ S+ P+QYR+F+FDDCDTLSPD WSAISK++DRA
Sbjct: 539 SRNIREVGPVSNLDFEGIMNLLDNVIASQLPTQYRVFIFDDCDTLSPDCWSAISKLIDRA 598
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
PRR+VF+LVSS+LD LPHIIISRCQKFFFPK+KDADIIYTLQWIA+KE +EIDKDALKLI
Sbjct: 599 PRRMVFVLVSSTLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIATKEDLEIDKDALKLI 658
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN
Sbjct: 659 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 718
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
LR IMETGVEPLALMSQLATVITDILAGSYDFTK+R RRKFFRRQ LSKE+MEKLRQALK
Sbjct: 719 LREIMETGVEPLALMSQLATVITDILAGSYDFTKERLRRKFFRRQALSKEDMEKLRQALK 778
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTR 791
TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSSADTSF+HSPL
Sbjct: 779 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPSSSADTSFNHSPL------------ 826
Query: 792 KGGERAEISNKETGVPMNVRLENFHAEN-SGDFIDGNMRKGISLDRKRHTGSGMALQQKS 850
VP N + SG I G +RK I
Sbjct: 827 --------------VPNNSSAHSADTNRLSGKQIPGKVRKEI------------------ 854
Query: 851 PLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRS 910
EEIWLEVL +IQ + KEFLY+EGKLISVS GAAPTVQL F S
Sbjct: 855 -----------------EEIWLEVLEKIQVDTLKEFLYKEGKLISVSIGAAPTVQLMFSS 897
Query: 911 HLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVI 970
HLTKSKAEK++ IL+AFES+LGSP+TIEIR ES+ D +AG H+PL+ A+KD SQMV
Sbjct: 898 HLTKSKAEKYRGHILRAFESILGSPVTIEIRSESRKDAKAGAHVPLIFSAAKDLPSQMVT 957
Query: 971 DSESIIGNRGPMAGPIEISKRIPRDEGIN-GASSQAQQLHSESLEMGRTEIVEVPASPRE 1029
+ +I NR AG +I++R+P+D + G S+Q Q L++ SLEMGR+EIVE+ SPRE
Sbjct: 958 NRGNITDNRRHQAGYDDINQRVPKDRDFHGGGSAQGQLLNANSLEMGRSEIVEILPSPRE 1017
Query: 1030 TK--DHAENRADYSKR-------------------ASLSERKKLGEQSQCQSIVRSKVSL 1068
K DH +N K AS+ ER+K GEQS QS+VRSKVSL
Sbjct: 1018 LKSNDHVDNNVQSDKTGLESSWAGEASSSHRKSTMASVPERRKFGEQSHSQSLVRSKVSL 1077
Query: 1069 AHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKI 1128
AHVIQQAEGC+QR+GW+KRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRK+ R KI
Sbjct: 1078 AHVIQQAEGCSQRSGWTKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKLSRFKI 1137
Query: 1129 RRRKPLSLLKLVSCGKCLSSKSPR 1152
R R+P SLLKLVSCGKCLSSKSPR
Sbjct: 1138 RTRRPHSLLKLVSCGKCLSSKSPR 1161
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255562516|ref|XP_002522264.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] gi|223538517|gb|EEF40122.1| replication factor C / DNA polymerase III gamma-tau subunit, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1518 bits (3931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 824/1222 (67%), Positives = 904/1222 (73%), Gaps = 187/1222 (15%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MT+AVR RILKDANG ISDHLRNHIHLTNCIHLKNHMHK SPILADRS+MRDL+VLQRSR
Sbjct: 1 MTKAVRNRILKDANGHISDHLRNHIHLTNCIHLKNHMHKQSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLLPKKGD D + EGRRS+GIERRR+ RLSG SP N
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLPKKGDKDAAVTEGRRSIGIERRREGRRLSGGSPPFANLA 120
Query: 121 TSKVAP------VNGVA--------------GVEIEMIEEL----------GEKNLV--- 147
SKV P GVA G I+ E G+++L
Sbjct: 121 PSKVVPGELSGGYEGVAAAVSDRSSKSGARDGRRIKREESSRKSNRADLLGGDEDLSHNQ 180
Query: 148 ERAGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGS 192
E GL+ KG+ +QD +KTLS+QL++IPMDSD SSNV G
Sbjct: 181 EVNGLVNDDVSGNSESKSRKSKHKGKHSQDFHIKTLSDQLNEIPMDSDVAASSNVHLHGR 240
Query: 193 RSGLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQ 251
RS +KTGEE IRGYS G++R KRRKFRGARR R A+ RDV GQ+EMSVASNSL Q
Sbjct: 241 RSQQDKTGEERETSIRGYS-GINRTKRRKFRGARRTR-ATPARDVEGQNEMSVASNSLNQ 298
Query: 252 GLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSD 311
G P+Y +EEE EYG+ NVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL SCGLSD
Sbjct: 299 GSVRPRYCIEEE--EYGDPNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSL-SCGLSD 355
Query: 312 SRIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSG 370
SR+RK G ASH R+ P+MPL SD S SST S AEALPLLVEAS SQ ST++AGWVHDYSG
Sbjct: 356 SRLRKGGMASHDRDAPNMPLASDYSCSSTKSDAEALPLLVEASLSQESTDNAGWVHDYSG 415
Query: 371 ELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVA 430
ELGI+ADHLLK+ VDSDLASE RSGGQ L N N RHQN TQKYMPRTFRDLVGQNLVA
Sbjct: 416 ELGIYADHLLKNDVDSDLASEARSGGQHKLRRNHNSRHQNFTQKYMPRTFRDLVGQNLVA 475
Query: 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490
QALSNAV+RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE PKPCG+CNSCISHD G
Sbjct: 476 QALSNAVVRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHPKPCGYCNSCISHDMG 535
Query: 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550
KSRNI+EVGPV NFDF +I+DLLDNM+ S PSQYR+F+FD CDTLS D WSAISKV+DR
Sbjct: 536 KSRNIREVGPVSNFDFGNIVDLLDNMIISHLPSQYRVFIFDGCDTLSSDCWSAISKVIDR 595
Query: 551 APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610
APRRVVF+LVSSSLD LPHIIISRCQKFFFPK+KDADIIYTLQWIASKE I+IDKDALKL
Sbjct: 596 APRRVVFVLVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLQWIASKEDIDIDKDALKL 655
Query: 611 IASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 670
IASRSDGSLRDA+MTLEQLSLLG +ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK
Sbjct: 656 IASRSDGSLRDAQMTLEQLSLLGLKISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 715
Query: 671 NLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQAL 730
+LRVIMETGVEPLALMSQLATVITDILAGSY+FTK+RHRRKFFRRQPLSKE+MEKLRQAL
Sbjct: 716 HLRVIMETGVEPLALMSQLATVITDILAGSYNFTKERHRRKFFRRQPLSKEDMEKLRQAL 775
Query: 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMT 790
KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+LPSSS +TSF+H T
Sbjct: 776 KTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYMLPSSSTETSFNHK------------T 823
Query: 791 RKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKS 850
+ A + +T VR+ +G + G RKG
Sbjct: 824 GVAPQWASALSSDT-----VRI-------NGKQVSGKTRKG------------------- 852
Query: 851 PLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRS 910
EEIWLEV+ +IQ N KEFLY+EGKLISVSFGAAPTVQL F S
Sbjct: 853 ----------------YEEIWLEVIGKIQFNSIKEFLYQEGKLISVSFGAAPTVQLMFSS 896
Query: 911 HLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVI 970
HLTK KAEKF+ ILQAFESV GS +T+EIRCES D GFHLP
Sbjct: 897 HLTKLKAEKFRAHILQAFESVFGSQITLEIRCESNRDMTGGFHLP--------------- 941
Query: 971 DSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRET 1030
AG ESL++GR+EIVE+PASPRE
Sbjct: 942 ------------AG--------------------------ESLDVGRSEIVEIPASPREI 963
Query: 1031 K--DHAENRADYSKRA------------------SLSERKKLGEQSQCQSIVRSKVSLAH 1070
K HA+N A+ SKRA S+SER+KLGE SQ +S+VRSKVSLAH
Sbjct: 964 KGSGHADNDAESSKRALQRARAGESVSHKNSSIGSMSERRKLGEPSQSKSLVRSKVSLAH 1023
Query: 1071 VIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRR 1130
VIQQAEGCTQ+ GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKAS+VTRRK+ RLKIR
Sbjct: 1024 VIQQAEGCTQQTGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSRLKIRT 1083
Query: 1131 RKPLSLLKLVSCGKCLSSKSPR 1152
RKP +LLKLVSCGKC+SSKSPR
Sbjct: 1084 RKPHALLKLVSCGKCISSKSPR 1105
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356557765|ref|XP_003547181.1| PREDICTED: uncharacterized protein LOC100793832 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1485 bits (3844), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 801/1227 (65%), Positives = 919/1227 (74%), Gaps = 111/1227 (9%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR R+LKDANGDISDHLRNHIHLTNCIHLKNHMHK+SPILADRSIMRDL+VLQRSR
Sbjct: 1 MTRAVRSRVLKDANGDISDHLRNHIHLTNCIHLKNHMHKNSPILADRSIMRDLVVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSWHSPSVVDLL K+ +ND + + GRRS+G+ERR++ RLSG+SP + +
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLFKRVENDAVSQGGRRSIGVERRKEGRRLSGTSPPLVSIG 120
Query: 121 TSKVAP---VNGVAGVEIEMI---------------EELGEKN----------------- 145
+S+VAP V G G+ EE G KN
Sbjct: 121 SSRVAPGEIVRGNDGITAPSERSSRSGMGDGRRVGREESGRKNDRPDFLDVNPEEPLNQA 180
Query: 146 ---LVE---------RAGLIFWKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSR 193
L E +A +G+ QD +VKTLSEQL+D+P+DSDDL SSN+ F G
Sbjct: 181 GKSLAEDVISRHSESKARKSKQRGKNVQDAQVKTLSEQLNDVPLDSDDLASSNIHFRGRF 240
Query: 194 SGLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQG 252
EK +E +R + +G++R KRRKFR ARR R A+ RD+ ++E+SVASNSLAQ
Sbjct: 241 PRQEKIIKEVEARMRSHGSGMNRGKRRKFRSARRTRVATTSRDIVAENELSVASNSLAQA 300
Query: 253 LACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDS 312
KYH+EE DE + + NVTRAP+NGCGIPWNWSRIHHRGKTFLDMAGRSL SCGLSDS
Sbjct: 301 SVHHKYHLEEADE-FADENVTRAPKNGCGIPWNWSRIHHRGKTFLDMAGRSL-SCGLSDS 358
Query: 313 RIRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGE 371
R++K A++ RN+ +MP+ S+RSSS T S AEALPLLVEASGS STE+A W H YSGE
Sbjct: 359 RLKKGTFAANGRNISEMPVASERSSSCTRSDAEALPLLVEASGSHASTENACWDHYYSGE 418
Query: 372 LGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQ 431
LG+F D+L KH VDSDLASE RSG Q+ L NR+ RHQ+LTQKYMPRTFRD+VGQNLVAQ
Sbjct: 419 LGLFGDNLFKHDVDSDLASEARSGDQRKLRGNRHSRHQSLTQKYMPRTFRDMVGQNLVAQ 478
Query: 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491
ALSNAVM++KVGLLYVFYGPHGTGKTS ARIFARALNC S E PKPCGFCN C++HD GK
Sbjct: 479 ALSNAVMKKKVGLLYVFYGPHGTGKTSSARIFARALNCNSSEHPKPCGFCNYCVAHDMGK 538
Query: 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551
SRNI+EVGPV NFDFESI++LLDNM+ S+ PS YR+F+FDDCDTLS D W+AISKV+DRA
Sbjct: 539 SRNIREVGPVSNFDFESIMELLDNMIVSQLPSHYRVFIFDDCDTLSTDCWNAISKVIDRA 598
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
PRRVVFILVSSSLD LPHIIISRCQKFFFPK+KDADIIYTL+WIA+KEG+EIDKDALKLI
Sbjct: 599 PRRVVFILVSSSLDVLPHIIISRCQKFFFPKLKDADIIYTLEWIATKEGLEIDKDALKLI 658
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN
Sbjct: 659 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 718
Query: 672 LRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALK 731
LRVIMETGVEPLALMSQLATVITDILAG+YDF KDR RRKFFRR LSKE+MEKLRQALK
Sbjct: 719 LRVIMETGVEPLALMSQLATVITDILAGTYDFRKDRRRRKFFRRPLLSKEDMEKLRQALK 778
Query: 732 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTR 791
TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLP+SS D SF+HSP L++A R R
Sbjct: 779 TLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPTSS-DNSFNHSPFALKDADAREAAR 837
Query: 792 KGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSP 851
G +I NK + M+ R+EN HA +S D M +G+ ++KRH+ SG Q +
Sbjct: 838 LTGNPVDIPNKGRRLSMDARIENVHAGSSAD----GMTRGLGSEKKRHSVSGFTPQHANS 893
Query: 852 -----LSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQL 906
+ R + G +R IEEIWLEVL RIQ G KEFL++EGKLISVSFGAAPTVQL
Sbjct: 894 QATEKIRMSERQILGINRTKIEEIWLEVLERIQITGLKEFLFKEGKLISVSFGAAPTVQL 953
Query: 907 TFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSS 966
F S LTKS AEKF+ ILQAFESVLGS +TIEIRCE DT + PL LP++ D SS
Sbjct: 954 MFSSQLTKSTAEKFRGHILQAFESVLGSSITIEIRCELNKDTASAVQQPLTLPSTNDSSS 1013
Query: 967 QMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPAS 1026
Q+ RD NG + A ++S+E R EIVE AS
Sbjct: 1014 QI-------------------------RD--FNGVGTLAHPSVTDSVEKRRGEIVEEAAS 1046
Query: 1027 PRETKDHAENRADYSK-----------RASLSERK----------KLGEQSQCQSIVRSK 1065
E K+ + + ++S S++K KL EQ Q +S+VRSK
Sbjct: 1047 QVEQKNSKQQVDAHGTSYKSLEGTSIGQSSASQKKPIVKSHLDQRKLMEQGQSRSLVRSK 1106
Query: 1066 VSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICR 1125
VSLAHVIQQAEG QR+GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKAS+VTRRK+ R
Sbjct: 1107 VSLAHVIQQAEG--QRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRVTRRKLSR 1164
Query: 1126 LKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
LKIR RKP +LL LVSCGKCLS+KSPR
Sbjct: 1165 LKIRSRKPRALLNLVSCGKCLSTKSPR 1191
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357447087|ref|XP_003593819.1| DNA polymerase III subunit gamma/tau [Medicago truncatula] gi|355482867|gb|AES64070.1| DNA polymerase III subunit gamma/tau [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1452 bits (3760), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 772/1233 (62%), Positives = 895/1233 (72%), Gaps = 137/1233 (11%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRA+R R+LKDANGDISDH+RNHIHLTNCIHLKNHMHK+SPI+ADRSIMRDL+VLQRSR
Sbjct: 1 MTRAIRNRVLKDANGDISDHIRNHIHLTNCIHLKNHMHKNSPIIADRSIMRDLVVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLS--GSSPQIPN 118
SLRDPSASPPSWHSPSVVDLL K+ DNDG + GRRSVG + R++ +LS G+SP + +
Sbjct: 61 SLRDPSASPPSWHSPSVVDLLFKRADNDGASQGGRRSVGNDSRKEGGKLSKIGNSPPLVS 120
Query: 119 FVTSKVAPVNGVAGVEI--------------------------------EMIEELGEKNL 146
TS+VAP G G + + +E ++ L
Sbjct: 121 KGTSRVAPGEGSRGNDAVPAATSERSSRSGIGNGRRVGREESGRKSNRPDYLEVTSQEQL 180
Query: 147 VERAGLIF-----------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQF 189
+ AG +G+ QDV+ KTLSEQLHD+P+DSDDL SSN+ F
Sbjct: 181 LHEAGKSLAEDVVSRHSQSIERKSRQRGKNVQDVQAKTLSEQLHDVPLDSDDLASSNIHF 240
Query: 190 CGSRSGLEKTGEE--HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASN 247
EK E+ +R ++NG++R+KRRKFR R+AR A+ RD+G ++E+SVASN
Sbjct: 241 RARFRRQEKIIEQAQQASVRSHANGMNRIKRRKFRSTRKARVATTSRDIGAENELSVASN 300
Query: 248 SLAQGLACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSC 307
SL +G A KYH EE D Y + NVTRAP+NGCG+PWNWSRIHHRGKTFLD+AGRSL SC
Sbjct: 301 SLPEGSAHQKYHSEEVDN-YADDNVTRAPKNGCGMPWNWSRIHHRGKTFLDIAGRSL-SC 358
Query: 308 GLSDSRIRKAGG-ASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWV 365
GLSDSR++K S+ RN+ MP+ +D S S TNS AEALPLLV+ASGS STE+A W
Sbjct: 359 GLSDSRLKKGRSLTSNGRNISVMPVAADDSCSCTNSEAEALPLLVDASGSHGSTENACWG 418
Query: 366 HDYSGELGIFADHLLKHAVDSDLASEGRSGGQQN-LGDNRNGRHQNLTQKYMPRTFRDLV 424
H YSGELGI+ D+L K +DSDLASE RSG Q N L N + RHQ+LTQKY+PRTFRD+V
Sbjct: 419 HGYSGELGIYGDNLFKQDIDSDLASEARSGSQHNKLRRNHHSRHQSLTQKYIPRTFRDMV 478
Query: 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484
GQNLVAQALSNAV RRKVGLLYVFYGPHGTGKTSCARIFARALNC S E PKPCGFCN C
Sbjct: 479 GQNLVAQALSNAVSRRKVGLLYVFYGPHGTGKTSCARIFARALNCSSSEHPKPCGFCNYC 538
Query: 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAI 544
I+HD GKSRNI+EVGPV NFDFE+I+DLLDNM+ S+ PSQYR+F+FDDCD+LS D W+AI
Sbjct: 539 IAHDMGKSRNIREVGPVSNFDFENIMDLLDNMIVSQLPSQYRVFIFDDCDSLSADCWNAI 598
Query: 545 SKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID 604
SKV+DRAPRRVVFILVS+SLD LPHIIISRCQKFFFPK+KD+DI+YTL IA+KEG++ID
Sbjct: 599 SKVIDRAPRRVVFILVSTSLDVLPHIIISRCQKFFFPKLKDSDIVYTLHGIATKEGLDID 658
Query: 605 KDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSAD 664
KDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSAD
Sbjct: 659 KDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSAD 718
Query: 665 TVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEME 724
TVNTVKNLRVIME GVEPLALMSQLATVITDILAG+YDFTK+R RRKFFRRQPLSKE+ME
Sbjct: 719 TVNTVKNLRVIMEAGVEPLALMSQLATVITDILAGTYDFTKERCRRKFFRRQPLSKEDME 778
Query: 725 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENA 784
KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY LP+SS D SF+HSP L N
Sbjct: 779 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYGLPTSS-DNSFNHSPFALNNG 837
Query: 785 GGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGM 844
+ TR G EI N+ + M+ R+E+ +A +S D +RH+ SG
Sbjct: 838 NVKEATRNTGNPVEILNRTRRMSMDARMESSNAGSSAD--------------RRHSLSGY 883
Query: 845 ALQQKSPLSA-----GGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFG 899
A Q S R S +R I+EIWLEVL RI G KEFLY+ GKLI +SFG
Sbjct: 884 APQHTYSHSTDKTRINERQTSDRNRKEIDEIWLEVLERIHYPGLKEFLYKAGKLIFISFG 943
Query: 900 AAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLP 959
AAPTVQL F S L+KS AEKF ILQAFESVLGS +TIEIRCE+ D + LPL+LP
Sbjct: 944 AAPTVQLMFNSQLSKSTAEKFTGHILQAFESVLGSSVTIEIRCEANKDAGSPVQLPLVLP 1003
Query: 960 ASKDGSSQMVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTE 1019
+ DGSSQ+ RD L+ E R+E
Sbjct: 1004 SINDGSSQV-------------------------RD------------LNDVGTEKRRSE 1026
Query: 1020 IVEVPASPRETKDH---AENRADYSKRASLSE-----------------RKKLGEQSQCQ 1059
IVE AS E K++ + A Y + S R+KL EQSQ +
Sbjct: 1027 IVEEEASHMEHKNNEQQVDGHATYKNQDGTSMGQVLASQKVPIVKSHLVRRKLSEQSQSR 1086
Query: 1060 SIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVT 1119
S+V+SKVSLAHVIQ+AEG QR+GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKAS+ T
Sbjct: 1087 SLVKSKVSLAHVIQRAEG--QRSGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASRAT 1144
Query: 1120 RRKICRLKIRRRKPLSLLKLVSCGKCLSSKSPR 1152
RRK+ RLKIR +K +LL LVSCGKCL++KSPR
Sbjct: 1145 RRKLSRLKIRTQKTHALLNLVSCGKCLATKSPR 1177
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449433559|ref|XP_004134565.1| PREDICTED: uncharacterized protein LOC101212118 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1425 bits (3688), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1210 (62%), Positives = 875/1210 (72%), Gaps = 152/1210 (12%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILK+ANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRS+MRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKEANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSW SPS+ DL + G+N+ +IREGRRSVG E RR +SGSSP + +F
Sbjct: 61 SLRDPSASPPSWQSPSITDLPSRMGENNVVIREGRRSVGTESRRVGRTISGSSPPLGSFA 120
Query: 121 TSKVAPV------NGVAGV-------EI------------------EMIEELGEKNLVER 149
TSKVAP +GV V EI +++ E + V
Sbjct: 121 TSKVAPAEVNVGADGVTAVSEHSVKSEIRDGRRIRREESSRRSDRNSVLDGNEESSPVHD 180
Query: 150 AGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSRS 194
A L+ K +Q + + KTLSEQL+ P+DSDD+ SS+ G RS
Sbjct: 181 AHLLHEVISRKSESKDRKSEQKDKQVRSIPFKTLSEQLNSAPIDSDDIASSSA-VHGRRS 239
Query: 195 GLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQGL 253
E+ +E RG +GL+R KRRKFRG RR+R RD G Q+E+SVASN+LA G
Sbjct: 240 QQERIADEPEPSFRGNCSGLNRGKRRKFRGTRRSRMNLTSRDTGVQNELSVASNTLAHGS 299
Query: 254 ACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSR 313
A K+ MEEE+E YG +NV PRNGCG+PWNWSRIHHRGK+FLDMAGRS SCG+SDS
Sbjct: 300 AHSKHKMEEENENYGNKNVIGGPRNGCGMPWNWSRIHHRGKSFLDMAGRSF-SCGISDSM 358
Query: 314 IRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGEL 372
+RK + R + P+ SD SSSS AEALPLLVEASGSQ S E+AGW DYSGEL
Sbjct: 359 LRKCSPTARGRGISGTPIASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQRDYSGEL 418
Query: 373 GIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQA 432
GIFAD+ +KH VDSDLASE R ++ + RHQNLTQKYMPRTF+DLVGQ+LVAQA
Sbjct: 419 GIFADNYIKHEVDSDLASEARCSNRRRTRGHHRARHQNLTQKYMPRTFKDLVGQHLVAQA 478
Query: 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492
LSNAV+R+KVGLLYVFYGPHGTGKTSCARIFARALNCQSLE KPCG CNSC+ +D GKS
Sbjct: 479 LSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMGKS 538
Query: 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552
RNI+EV PV N DFESI +LLD+M+ S+ PSQY +F+FDDCD+ S + WSAI+KV+DRAP
Sbjct: 539 RNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIFDDCDSFSANCWSAITKVIDRAP 598
Query: 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612
RR+VF+LV SSLD LPHIIISRCQKFFFPK+KDAD+I+TLQWIA++E +EIDKDALKLI
Sbjct: 599 RRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDALKLIT 658
Query: 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672
SRSDGSLRDAEMTLEQLSLLGQRISVPL+QELVGLISDEKLVDLLDLALSADTVNTVK+L
Sbjct: 659 SRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKHL 718
Query: 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKT 732
R+I+E+GVEP+ALMSQ+ATVITDILAGSYDF K+R RRKFFRRQPLSKE+MEKLRQALKT
Sbjct: 719 RLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLRQALKT 778
Query: 733 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792
LSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+L SSSA+TSF+HSPL L N GR
Sbjct: 779 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLL-SSSAETSFNHSPLALNNVSGR----- 832
Query: 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPL 852
GISLDRKRH+G
Sbjct: 833 --------------------------------------GISLDRKRHSG----------- 843
Query: 853 SAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHL 912
VSG + +EEIWLEVL +I+ N KEFL +EG L SVSFGAAPTV+L F SH
Sbjct: 844 ------VSGTTHKAMEEIWLEVLGKIRMNSIKEFLIQEGTLASVSFGAAPTVRLIFNSHN 897
Query: 913 TKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDS 972
KSKAEK ++QILQAFES LGS + IEIR ESK DT G H + LPASK+G Q+
Sbjct: 898 AKSKAEKLREQILQAFESALGSSVIIEIRYESKRDTLVGNHSSVTLPASKNGLLQI---- 953
Query: 973 ESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKD 1032
RD I+G SQAQ H S E+GR EIVE+ ASPRE +
Sbjct: 954 ---------------------RD--ISGNMSQAQLTHYGSGEVGRGEIVEIDASPREANN 990
Query: 1033 HAE-NRADY-------------SKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGC 1078
E N+ + S +S+SER++ G QS+ QSIVRSKVSLAHVIQQAEGC
Sbjct: 991 QREPNQRNLEGSQGEVSVSRKNSTMSSISERREAGAQSRSQSIVRSKVSLAHVIQQAEGC 1050
Query: 1079 TQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLK 1138
+QR+GWS RKAVSIAEKLEQENLRLEP+SRSLLCWKAS+VTRRK+ RLK+R R+P SLLK
Sbjct: 1051 SQRSGWSTRKAVSIAEKLEQENLRLEPQSRSLLCWKASRVTRRKLSRLKVRTRRPQSLLK 1110
Query: 1139 LVSCGKCLSS 1148
LVSCGKCLS+
Sbjct: 1111 LVSCGKCLSA 1120
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449479207|ref|XP_004155535.1| PREDICTED: uncharacterized protein LOC101226355 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1424 bits (3686), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 758/1210 (62%), Positives = 875/1210 (72%), Gaps = 152/1210 (12%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILK+ANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRS+MRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKEANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSW SPS+ DL + G+N+ +IREGRRSVG E RR +SGSSP + +F
Sbjct: 61 SLRDPSASPPSWQSPSITDLPSRMGENNVVIREGRRSVGTESRRVGRTISGSSPPLGSFA 120
Query: 121 TSKVAPV------NGVAGV-------EI------------------EMIEELGEKNLVER 149
TSKVAP +GV V EI +++ E + V
Sbjct: 121 TSKVAPAEVNVGADGVTAVSEHSVKSEIRDGRRIRREESSRRSDRNSVLDGNEESSPVHD 180
Query: 150 AGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSRS 194
A L+ K +Q + + KTLSEQL+ P+DSDD+ SS+ G RS
Sbjct: 181 AHLLHEVISRKSESKDRKSEQKDKQVRSIPFKTLSEQLNSAPIDSDDIASSSA-VHGRRS 239
Query: 195 GLEKTGEE-HGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQGL 253
E+ +E RG +GL+R KRRKFRG RR+R RD G Q+E+SVASN+LA G
Sbjct: 240 QQERIADEPEPSFRGNCSGLNRGKRRKFRGTRRSRMNLTSRDTGVQNELSVASNTLAHGS 299
Query: 254 ACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSR 313
A K+ MEEE+E YG +NV PRNGCG+PWNWSRIHHRGK+FLDMAGRS SCG+SDS
Sbjct: 300 AHSKHKMEEENENYGNKNVIGGPRNGCGMPWNWSRIHHRGKSFLDMAGRSF-SCGISDSM 358
Query: 314 IRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGEL 372
+RK + R + P+ SD SSSS AEALPLLVEASGSQ S E+AGW DYSGEL
Sbjct: 359 LRKCSPTARGRGISGTPIASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQLDYSGEL 418
Query: 373 GIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQA 432
GIFAD+ +KH VDSDLASE R ++ + RHQNLTQKYMPRTF+DLVGQ+LVAQA
Sbjct: 419 GIFADNYIKHEVDSDLASEARCSNRRRTRGHHRSRHQNLTQKYMPRTFKDLVGQHLVAQA 478
Query: 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492
LSNAV+R+KVGLLYVFYGPHGTGKTSCARIFARALNCQSLE KPCG CNSC+ +D GKS
Sbjct: 479 LSNAVLRKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMGKS 538
Query: 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552
RNI+EV PV N DFESI +LLD+M+ S+ PSQY +F+FDDCD+ S + WSAI+KV+DRAP
Sbjct: 539 RNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIFDDCDSFSANCWSAITKVIDRAP 598
Query: 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612
RR+VF+LV SSLD LPHIIISRCQKFFFPK+KDAD+I+TLQWIA++E +EIDKDALKLI
Sbjct: 599 RRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDALKLIT 658
Query: 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672
SRSDGSLRDAEMTLEQLSLLGQRISVPL+QELVGLISDEKLVDLLDLALSADTVNTVK+L
Sbjct: 659 SRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKHL 718
Query: 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKT 732
R+I+E+GVEP+ALMSQ+ATVITDILAGSYDF K+R RRKFFRRQPLSKE+MEKLRQALKT
Sbjct: 719 RLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLRQALKT 778
Query: 733 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792
LSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+L SSSA+TSF+HSPL L N GR
Sbjct: 779 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYLL-SSSAETSFNHSPLALNNVSGR----- 832
Query: 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPL 852
GISLDRKRH+G
Sbjct: 833 --------------------------------------GISLDRKRHSG----------- 843
Query: 853 SAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHL 912
VSG + +EEIWLEVL +I+ N KEFL +EG L SVSFGAAPTV+L F SH
Sbjct: 844 ------VSGTTHKAMEEIWLEVLGKIRMNSIKEFLIQEGTLASVSFGAAPTVRLIFNSHN 897
Query: 913 TKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDS 972
KSKAEK ++QILQAFES LGS + IEIR ESK DT G H + LPASK+G Q+
Sbjct: 898 AKSKAEKLREQILQAFESALGSSVIIEIRYESKRDTLVGNHSSVTLPASKNGLLQI---- 953
Query: 973 ESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKD 1032
RD I+G SQAQ H S E+GR EIVE+ ASPRE +
Sbjct: 954 ---------------------RD--ISGNMSQAQLTHYGSGEVGRGEIVEIDASPREANN 990
Query: 1033 HAE-NRADY-------------SKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQQAEGC 1078
E N+ + S +S+SER++ G QS+ QSIVRSKVSLAHVIQQAEGC
Sbjct: 991 QREPNQRNLEGSQGEVSVSRKNSTMSSISERREAGAQSRSQSIVRSKVSLAHVIQQAEGC 1050
Query: 1079 TQRNGWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRRKPLSLLK 1138
+QR+GWS RKAVSIAEKLEQENLRLEP+SRSLLCWKAS+VTRRK+ RLK+R R+P SLLK
Sbjct: 1051 SQRSGWSTRKAVSIAEKLEQENLRLEPQSRSLLCWKASRVTRRKLSRLKVRTRRPQSLLK 1110
Query: 1139 LVSCGKCLSS 1148
LVSCGKCLS+
Sbjct: 1111 LVSCGKCLSA 1120
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|307136186|gb|ADN34025.1| DNA polymerase III gamma-tau subunit [Cucumis melo subsp. melo] | Back alignment and taxonomy information |
|---|
Score = 1393 bits (3605), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 740/1175 (62%), Positives = 860/1175 (73%), Gaps = 102/1175 (8%)
Query: 1 MTRAVRGRILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSR 60
MTRAVR RILK+ANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRS+MRDL+VLQRSR
Sbjct: 1 MTRAVRDRILKEANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSLMRDLIVLQRSR 60
Query: 61 SLRDPSASPPSWHSPSVVDLLPKKGDNDGMIREGRRSVGIERRRDSSRLSGSSPQIPNFV 120
SLRDPSASPPSW SPS+ DL + G+N+ +IREGRRSVG E RR +SGSSP + +F
Sbjct: 61 SLRDPSASPPSWQSPSITDLPSRMGENNAVIREGRRSVGTESRRVGRTISGSSPPLGSFA 120
Query: 121 TSKVAP--VN-GVAGV----------EI------------------EMIEELGEKNLVER 149
TSKVAP VN G GV EI +++ E + V
Sbjct: 121 TSKVAPAEVNVGTDGVTAASEHSVKSEIRDGRRIRREESSRRSDRNSVLDGNEESSPVHD 180
Query: 150 AGLIF---------------WKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSRS 194
A L+ K +Q + + KTLSEQL+ P+DSDD+ SS+ G RS
Sbjct: 181 AHLLHEIISRKSESKDRKSEQKDKQVRSIPFKTLSEQLNSAPIDSDDIASSSA-VHGRRS 239
Query: 195 GLEK-TGEEHGGIRGYSNGLHRVKRRKFRGARRARTASALRDVGGQSEMSVASNSLAQGL 253
EK T E RG +GL+RVKRRKFRG RR+R RD G Q+E+SVASN+LA G
Sbjct: 240 QQEKITDEPEPSFRGNCSGLNRVKRRKFRGTRRSRMNVTSRDTGVQNELSVASNTLAHGS 299
Query: 254 ACPKYHMEEEDEEYGERNVTRAPRNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSR 313
K+ MEEE+E Y +NV PRNGCG+PWNWSRIHHRGK+FLDMAGRS SCG+SDS
Sbjct: 300 VHSKHKMEEENENYANKNVIGGPRNGCGMPWNWSRIHHRGKSFLDMAGRSF-SCGISDSM 358
Query: 314 IRKAGGASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQ-STEHAGWVHDYSGEL 372
+RK + R + P+ SD SSSS AEALPLLVEASGSQ S E+AGW DYSGEL
Sbjct: 359 LRKCSPTARGRGISGTPIASDHSSSSAKFDAEALPLLVEASGSQESIENAGWQRDYSGEL 418
Query: 373 GIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQA 432
GIFAD+ +KH VDSDLASE R ++ + RHQNLTQKYMPRTF+DLVGQ+LVAQA
Sbjct: 419 GIFADNYIKHEVDSDLASEARCSNRRRTRGHHRSRHQNLTQKYMPRTFKDLVGQHLVAQA 478
Query: 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492
LSNAV+++KVGLLYVFYGPHGTGKTSCARIFARALNCQSLE KPCG CNSC+ +D GKS
Sbjct: 479 LSNAVLKKKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEHSKPCGLCNSCVGYDMGKS 538
Query: 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552
RNI+EV PV N DFESI +LLD+M+ S+ PSQY +F+FDDCD+ S + WSAI+KV+DRAP
Sbjct: 539 RNIREVVPVSNLDFESITELLDHMIASQLPSQYTVFIFDDCDSFSANCWSAITKVIDRAP 598
Query: 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612
RR+VF+LV SSLD LPHIIISRCQKFFFPK+KDAD+I+TLQWIA++E +EIDKDALKLI
Sbjct: 599 RRLVFVLVCSSLDVLPHIIISRCQKFFFPKLKDADVIHTLQWIATQENLEIDKDALKLIT 658
Query: 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672
SRSDGSLRDAEMTLEQLSLLGQRISVPL+QELVGLISDEKLVDLLDLALSADTVNTVK+L
Sbjct: 659 SRSDGSLRDAEMTLEQLSLLGQRISVPLIQELVGLISDEKLVDLLDLALSADTVNTVKHL 718
Query: 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKT 732
R+I+E+GVEP+ALMSQ+ATVITDILAGSYDF K+R RRKFFRRQPLSKE+MEKLRQALKT
Sbjct: 719 RLIIESGVEPMALMSQIATVITDILAGSYDFKKERPRRKFFRRQPLSKEDMEKLRQALKT 778
Query: 733 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792
LSEAEKQLRMSNDKLTWLTAALLQLAPDQQY+L SSSA+TSF+HSPL L N GRG +R
Sbjct: 779 LSEAEKQLRMSNDKLTWLTAALLQLAPDQQYML-SSSAETSFNHSPLALNNVSGRGASRN 837
Query: 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQ---- 848
+ +IS E G+P +V+ D D + KGISLDRKRH+G ++ Q+
Sbjct: 838 VDQHGQISAGEKGLPTDVKFAGH-----SDSFDNRISKGISLDRKRHSGVCVSPQRTIGT 892
Query: 849 -KSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLT 907
+ + G+ VSG + IEEIWLEVL +I+ N KEFL +EG L SVSFGAAPTV+L
Sbjct: 893 ATDLMKSSGKQVSGTTHKAIEEIWLEVLGKIRINSIKEFLIQEGTLASVSFGAAPTVRLI 952
Query: 908 FRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQ 967
F SH KSKAEK ++QILQAFES LGS + IEIRCESK DT G H + LP SK+G Q
Sbjct: 953 FNSHNAKSKAEKLREQILQAFESALGSSVIIEIRCESKRDTTVGNHSSVTLPVSKNGLLQ 1012
Query: 968 MVIDSESIIGNRGPMAGPIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASP 1027
+ RD I+G SQAQ H S E+GR EIVE+ ASP
Sbjct: 1013 I-------------------------RD--ISGNMSQAQLPHYGSGEVGRGEIVEIDASP 1045
Query: 1028 RETKDHAE----NRADY----------SKRASLSERKKLGEQSQCQSIVRSKVSLAHVIQ 1073
RE + E N D S +S+SER++ G QS+ QSIVRSKVSLAHVIQ
Sbjct: 1046 REAHNQREPNQRNLEDSQGEVSVSRKNSTMSSISERREAGAQSRSQSIVRSKVSLAHVIQ 1105
Query: 1074 QAEGCTQRNGWSKRKAVSIAEKLEQENLRLEPRSR 1108
QAEGC+QR+GWSKRKAVSIAEKLEQENL + SR
Sbjct: 1106 QAEGCSQRSGWSKRKAVSIAEKLEQENLYVMLSSR 1140
|
Source: Cucumis melo subsp. melo Species: Cucumis melo Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|334186680|ref|NP_193617.3| AAA-type ATPase family protein [Arabidopsis thaliana] gi|332658694|gb|AEE84094.1| AAA-type ATPase family protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1180 bits (3052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/1198 (57%), Positives = 826/1198 (68%), Gaps = 177/1198 (14%)
Query: 8 RILKDANGDISDHLRNHIHLTNCIHLKNHMHKHSPILADRSIMRDLMVLQRSRSLRDPSA 67
RILKDANGDI +HLRNHIHLTNCIHLKN+MHK SP+L DR++MRDL+VLQRSRSLRDPSA
Sbjct: 21 RILKDANGDIGEHLRNHIHLTNCIHLKNNMHKQSPVLTDRALMRDLIVLQRSRSLRDPSA 80
Query: 68 SPPSWHSP-SVVDLLPKKGDNDGMIREGRRSVGIERR-RDSSRLSGSSPQIPNFVTSKVA 125
SPP+W++P SVVDLLPKKGD ++ GRRSV +++ R S LSGSSP + NF TSKV
Sbjct: 81 SPPAWNTPPSVVDLLPKKGD---LVEGGRRSVDLKKSSRRLSALSGSSPVV-NFGTSKVT 136
Query: 126 PVNGVAG-------------------VEIEMIEELGEKNLVERAGLIFWKGRQ---TQDV 163
P + +G + ++ N V G R+ D
Sbjct: 137 PSDERSGPVSGERDSGRRVKREESSRKSYRIGDDYQNVNEVVSHGSGSKASRRLSRVNDA 196
Query: 164 RVKTLSEQLHDIPMDSDDL-----ISSNVQFCGSRSGLEKTGEEHGGIRGYSNGLHRVKR 218
VKTLS+QL+++ + D + V++ G G RG + G+ R KR
Sbjct: 197 MVKTLSDQLNEVVVGDSDDVVSSNVRPRVRY--------GGGGGGGNTRGCAGGMSRPKR 248
Query: 219 RKFRGARRARTASALRDVGG-QSEMSVASNSLAQGLACPKYHMEEEDEEYGERNVTRAPR 277
RKFRG RR R S RD GG +SEMSVASN+L Q K+ + E E +GE+N+T+A
Sbjct: 249 RKFRGTRRVRGKS--RDTGGGKSEMSVASNTLPQ---VEKH--DGEKEGFGEQNMTKA-- 299
Query: 278 NGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLV--SDR 335
CGIP+NWSRIHHRGKTFLD AGRSL SCG+SDS+ + G ++ RN D ++ D
Sbjct: 300 --CGIPFNWSRIHHRGKTFLDKAGRSL-SCGMSDSKGGRKG-ETNERNGSDKMMIQSDDD 355
Query: 336 SSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSG 395
SSS S EALPLLV+ S E+ GWVHDYSGELGIFAD LLK+ DSDLASEGRSG
Sbjct: 356 SSSFIGSDGEALPLLVD-----SGENDGWVHDYSGELGIFADSLLKNDEDSDLASEGRSG 410
Query: 396 GQQ-------NLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVF 448
++ N +HQ+LT+KY P+TFRDL+GQNLV QALSNAV RRK+GLLYVF
Sbjct: 411 EKKHKKKSHVNARHRHRQQHQSLTEKYTPKTFRDLLGQNLVVQALSNAVARRKLGLLYVF 470
Query: 449 YGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508
+GP+GTGKTSCARIFARALNC S+EQPKPCG C+SC+SHD GKS NI+EVGPVGN+DFE
Sbjct: 471 HGPNGTGKTSCARIFARALNCHSMEQPKPCGTCSSCVSHDMGKSWNIREVGPVGNYDFEK 530
Query: 509 ILDLLDN--MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSLD 565
I+DLLD MV+S+ P R+F+FDDCDTLS D W+A+SKVVDRA PR VVFILV SSLD
Sbjct: 531 IMDLLDGNVMVSSQSP---RVFIFDDCDTLSSDCWNALSKVVDRAAPRHVVFILVCSSLD 587
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625
LPH+IISRCQKFFFPK+KDADI+Y+LQWIASKE IEIDKDALKLIASRSDGSLRDAEMT
Sbjct: 588 VLPHVIISRCQKFFFPKLKDADIVYSLQWIASKEEIEIDKDALKLIASRSDGSLRDAEMT 647
Query: 626 LEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLAL 685
LEQLSLLGQRISVPLVQELVGL+SDEKLVDLLDLALSADTVNTVKNLR IMET VEPLAL
Sbjct: 648 LEQLSLLGQRISVPLVQELVGLVSDEKLVDLLDLALSADTVNTVKNLRTIMETSVEPLAL 707
Query: 686 MSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSND 745
MSQLATVITDILAGSYDFTKD+H+RKFFRRQPL KE+MEKLRQALKTLSEAEKQLR+SND
Sbjct: 708 MSQLATVITDILAGSYDFTKDQHKRKFFRRQPLPKEDMEKLRQALKTLSEAEKQLRVSND 767
Query: 746 KLTWLTAALLQLAPDQQYVLP-SSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKET 804
KLTWLTAALLQLAPDQ Y+L SS+ADT GGR +
Sbjct: 768 KLTWLTAALLQLAPDQNYLLQRSSTADT------------GGRESS-------------- 801
Query: 805 GVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSR 864
+ H + S D G + LDR+R S +R
Sbjct: 802 ---------DHHLDPSSDAAGG---RSSGLDRRRGD-------------------SRKNR 830
Query: 865 NGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQI 924
+EEIWLEV+ +++ NG +EFLY+EG+++S++ G+APTV L F S LTKS AEKF+ I
Sbjct: 831 PAVEEIWLEVIEKLRVNGLREFLYKEGRIVSLNLGSAPTVHLMFSSPLTKSTAEKFRSHI 890
Query: 925 LQAFESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDSESIIGNRGPMAG 984
+QAFE+VL SP+TIEIRCE+K D + H P KD S + S ++IG+
Sbjct: 891 MQAFEAVLESPVTIEIRCETKKDPRNNVHHHHHHPTVKDKS---LPQSLALIGH------ 941
Query: 985 PIEISKRIPRDEGINGASSQAQQLHSESLEMGRTEIVEVPASPRETKDHAENRADY---- 1040
D I+G+ GR+EIVEV S + + + + +
Sbjct: 942 ----------DYNIDGS--------------GRSEIVEVTESNGQRRQQQKQQEEERTEP 977
Query: 1041 --SKRASLSERKKL---GEQSQCQSIVRSKVSLAHVIQQAEGCTQRNGWSKRKAVSIAEK 1095
S + + RK L Q+Q QSIVR KVSLAHVIQQA+GC+ +NGWSKRKAVSIAEK
Sbjct: 978 VGSSALARARRKHLEASQSQNQSQSIVRGKVSLAHVIQQADGCSLQNGWSKRKAVSIAEK 1037
Query: 1096 LEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRRR--KPLSLLKLVSCGKCLSSKSP 1151
LEQENLRLEPRSRSLLCWK+S+ TRRK RLK+R R +P +LLKLVSCGKCLS++SP
Sbjct: 1038 LEQENLRLEPRSRSLLCWKSSRGTRRKATRLKVRTRRARPHTLLKLVSCGKCLSTRSP 1095
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1152 | ||||||
| TAIR|locus:2172013 | 966 | AT5G45720 [Arabidopsis thalian | 0.370 | 0.442 | 0.673 | 4.5e-235 | |
| TAIR|locus:2065299 | 1218 | STI "STICHEL" [Arabidopsis tha | 0.569 | 0.538 | 0.339 | 4.1e-87 | |
| TAIR|locus:2012497 | 1116 | AT1G14460 [Arabidopsis thalian | 0.557 | 0.575 | 0.328 | 3.8e-85 | |
| TAIR|locus:2121934 | 857 | AT4G24790 [Arabidopsis thalian | 0.396 | 0.533 | 0.359 | 1.6e-78 | |
| TIGR_CMR|DET_0585 | 559 | DET_0585 "DNA polymerase III, | 0.449 | 0.926 | 0.250 | 2.1e-41 | |
| TIGR_CMR|BA_0019 | 562 | BA_0019 "DNA polymerase III, g | 0.312 | 0.640 | 0.272 | 2.5e-40 | |
| UNIPROTKB|Q97RF7 | 551 | dnaX "DNA polymerase III, gamm | 0.289 | 0.606 | 0.290 | 2.9e-40 | |
| TIGR_CMR|CHY_2675 | 511 | CHY_2675 "putative DNA polymer | 0.242 | 0.545 | 0.293 | 7.2e-38 | |
| UNIPROTKB|P09122 | 563 | dnaX "DNA polymerase III subun | 0.251 | 0.515 | 0.285 | 3.6e-35 | |
| TIGR_CMR|GSU_0094 | 579 | GSU_0094 "DNA polymerase III, | 0.206 | 0.411 | 0.343 | 4.2e-35 |
| TAIR|locus:2172013 AT5G45720 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1494 (531.0 bits), Expect = 4.5e-235, Sum P(4) = 4.5e-235
Identities = 299/444 (67%), Positives = 356/444 (80%)
Query: 337 SSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGG 396
S S++S EALPLLV+++ ++ WVHDYSGELGIFAD+LLK+ DS + G+
Sbjct: 284 SDSSSSDREALPLLVDSADNEE-----WVHDYSGELGIFADNLLKNGKDSVI---GKKSS 335
Query: 397 QQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGK 456
++N HQ+ TQKY PRTFRDL+GQNLV QALSNA+ +R+VGLLYVF+GP+GTGK
Sbjct: 336 RKN-----TRWHQSFTQKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGK 390
Query: 457 TSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516
TSCAR+FARALNC S EQ KPCG C+SC+S+D GK+R I+E+GPV +FDFE++LD +
Sbjct: 391 TSCARVFARALNCHSTEQSKPCGVCSSCVSYDDGKNRYIREMGPVKSFDFENLLDKTN-- 448
Query: 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
+ Q + +FDDCDT+S D W+ +SK+VDRAPRRVVF+LV SSLD LPHII+SRCQ
Sbjct: 449 -IRQQQKQQLVLIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQ 507
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI 636
KFFFPK+KD DII +LQ IASKE I+IDKDALKL+ASRSDGSLRDAEMTLEQLSLLG RI
Sbjct: 508 KFFFPKLKDVDIIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDAEMTLEQLSLLGTRI 567
Query: 637 SVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
SVPLVQE+VGLISDEK TVNTVKNLR+IMETG+EPLALMSQLATVITDI
Sbjct: 568 SVPLVQEMVGLISDEKLVDLLDLALSADTVNTVKNLRIIMETGLEPLALMSQLATVITDI 627
Query: 697 LAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKXXXXXXXXXX 756
LAGSYDFTKD+ +RKFFRRQPLSKE+MEKL+QALKTLSE+EKQLR+SNDK
Sbjct: 628 LAGSYDFTKDQCKRKFFRRQPLSKEDMEKLKQALKTLSESEKQLRVSNDKLTWLTAALLQ 687
Query: 757 XXPDQQYVLP-SSSADTSFSHSPL 779
PD+QY+LP SSSAD SF+H+PL
Sbjct: 688 LAPDKQYLLPHSSSADASFNHTPL 711
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| TAIR|locus:2065299 STI "STICHEL" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 871 (311.7 bits), Expect = 4.1e-87, P = 4.1e-87
Identities = 239/703 (33%), Positives = 355/703 (50%)
Query: 271 NVTRAPRNGCGIPWNWSR--IHHRG-------KTFLDMAGRSLTS--CGLSDSRIRKAGG 319
N+ R GCGIP W++ + HRG +F D R+ +S CG S S R+
Sbjct: 298 NLDLPGRQGCGIPCYWTKKAMKHRGGCRSCCSPSFSDTLRRTGSSILCG-SQSVYRRHN- 355
Query: 320 ASHSRNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGW-VHDYS-----GELG 373
HS ++ RS+ LPLL + G + D GEL
Sbjct: 356 -RHSSGGYSKQKIACRSAQGV------LPLLSYGGDGRGGSSLGTGLSDDELSTNYGELD 408
Query: 374 IFADHLL--KHAVDSDLASEGRSG----GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQN 427
+ A L + S + +G G++ G ++ +QKY P F +L+GQ+
Sbjct: 409 LEAQSRLDGRRWSTSYRSQDGLEAVALDGEEEEGSTPE-TIRSFSQKYRPMFFEELIGQS 467
Query: 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487
+V Q+L NAV R ++ +Y+F GP GTGKTS ARIF+ ALNC + E+ KPCG+C C
Sbjct: 468 IVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVATEEMKPCGYCKECNDF 527
Query: 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP--PSQYRIFVFDDCDTLSPDSWSAIS 545
GKS++ E+ + + LL N+ T P S Y++FV D+C L +W +
Sbjct: 528 MSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSMYKVFVIDECHLLPSKTWLSFL 587
Query: 546 KVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDK 605
K ++ ++VVFI +++ L+ +P I SRCQKF F K+KD+DI+ L+ IAS E +++D
Sbjct: 588 KFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLKDSDIVVRLKKIASDENLDVDL 647
Query: 606 DALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKXXXXXXXXXXXXT 665
AL LIA +DGSLRDAE LEQLSLLG+RI+ LV ELVG++SDEK T
Sbjct: 648 HALDLIAMNADGSLRDAETMLEQLSLLGKRITTALVNELVGVVSDEKLLELLELALSSDT 707
Query: 666 VNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEK 725
TVK R +++ G +P+ LMSQLA++I DI+AG+Y +++ FF + L++ +ME
Sbjct: 708 AETVKRARELLDLGADPIVLMSQLASLIMDIIAGTYKVVDEKYSNAFFDGRNLTEADMEG 767
Query: 726 LRQALKTLSEAEKQLRMSNDKXX--XXXXXXXXXXPDQQYVLPSSSADTSFSHSPLDLEN 783
L+ ALK LSEAEKQLR+SND+ P SS S + D +
Sbjct: 768 LKHALKLLSEAEKQLRVSNDRSTWFTATLLQLGSMPSPGTTHTGSSRRQSSRATDDDPAS 827
Query: 784 AGGRGMTRKGGER-AEISNKETGVPMNVRLENF-HAENSGDF---IDGNMRKGISLDRKR 838
M K +R + ++ P +V N H+ + F ID N K S +
Sbjct: 828 VSREVMAYK--QRIGGLHFSKSASPASVIKRNGNHSHEAKPFSRVIDNNCYKSSSSSQMI 885
Query: 839 HTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSF 898
+ +A + S S ++ S + +IW + + R + ++ LY GKLIS+S
Sbjct: 886 ESEGSIASHENSIAST--MMLNQRSSEKLNDIWRKCIERCHSKTLRQLLYTHGKLISISE 943
Query: 899 GAAPTVQ-LTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEI 940
V + F + K +AE+F I + E VL + + I
Sbjct: 944 VEGILVAYIAFGENDIKLRAERFLSSITNSIEMVLRRSVEVRI 986
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| TAIR|locus:2012497 AT1G14460 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 852 (305.0 bits), Expect = 3.8e-85, P = 3.8e-85
Identities = 225/685 (32%), Positives = 354/685 (51%)
Query: 277 RNGCGIPWNWSR--IHHRGKTFLDMAGRSLTSCGLSDSRIRKA-----GGASHSRNVPDM 329
R GCGIP+ W++ + HRG RS S SD+ RK G S R
Sbjct: 282 RQGCGIPFYWTKRNLKHRGGC------RSCCSPSFSDTLRRKGSSILCGSQSVYRRHRHS 335
Query: 330 PLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVH---DYS---GELGIFADHLLK-H 382
++ + S LPLL S+ G + D S GE+ + A L
Sbjct: 336 SGRFNKQKLALRSAKGVLPLLKYGGDSRGGSSIGIGYSDDDLSTDFGEIDLEAQSRLDGR 395
Query: 383 AVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV 442
S S+ ++ G + Q+L+QKY P F +L+GQ++V Q+L NAV + +V
Sbjct: 396 RWSSCCKSQDGEREEEEEGGSTPESIQSLSQKYKPMFFDELIGQSIVVQSLMNAVKKGRV 455
Query: 443 GLLYVFYGPHGTGKTSCARIFARALNCQSL-EQPKPCGFCNSCISHDRGKSRNIKEVGPV 501
+Y+F GP GTGKTS ARI + ALNC + E+ KPCG+C C + GKSR++ E+
Sbjct: 456 AHVYLFQGPRGTGKTSTARILSAALNCDVVTEEMKPCGYCKECSDYMLGKSRDLLELDAG 515
Query: 502 GNFDFESILDLLDNMVTSRPPS--QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559
E + LL ++T P S +Y++FV D+C L +W ++ K ++ ++ VF+
Sbjct: 516 KKNGAEKVRYLLKKLLTLAPQSSQRYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVC 575
Query: 560 VSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSL 619
+++ LD +P I SRCQK+ F K++D DI+ L+ IAS E ++++ AL LIA +DGSL
Sbjct: 576 ITTDLDNVPRTIQSRCQKYIFNKVRDGDIVVRLRKIASDENLDVESQALDLIALNADGSL 635
Query: 620 RDAEMTLEQLSLLGQRISVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETG 679
RDAE LEQLSL+G+RI+V LV ELVG++SD+K T TVK R +++ G
Sbjct: 636 RDAETMLEQLSLMGKRITVDLVNELVGVVSDDKLLELLELALSSDTAETVKKARELLDLG 695
Query: 680 VEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQ 739
+P+ +MSQLA++I DI+AG+Y +++ F R+ L++ ++E+L+ ALK LSEAEKQ
Sbjct: 696 ADPILMMSQLASLIMDIIAGAYKALDEKYSEAFLDRRNLTEADLERLKHALKLLSEAEKQ 755
Query: 740 LRMSNDKXXXXXXXXXXXXPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKG---GER 796
LR+S D+ Q +PS T S A ++R+ +R
Sbjct: 756 LRVSTDRSTWFIATLL-----QLGSMPSPGT-THTGSSRRQSSRATEESISREVIAYKQR 809
Query: 797 AEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGG 856
+ + T P ++R SG+ + ++ S + + MA + +A
Sbjct: 810 SGLQCSNTASPTSIR-------KSGNLVR-EVKLSSSSSEVLESDTSMASHDDT--TAST 859
Query: 857 RHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQ-LTFRSHLTKS 915
++ + + +IW++ ++R + K+ LY GKL+S+S V + F K+
Sbjct: 860 MTLTCRNSEKLNDIWIKCVDRCHSKTLKQLLYAHGKLLSISEVEGILVAYIAFGEGEIKA 919
Query: 916 KAEKFKDQILQAFESVLGSPLTIEI 940
+AE+F I + E VL + + I
Sbjct: 920 RAERFVSSITNSIEMVLRRNVEVRI 944
|
|
| TAIR|locus:2121934 AT4G24790 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 690 (248.0 bits), Expect = 1.6e-78, Sum P(3) = 1.6e-78
Identities = 169/470 (35%), Positives = 255/470 (54%)
Query: 287 SRIHHRGKTFLDMAGRSLTSCGLSDSRIRKAGGASHSRNVPDMPLVSD------RSSSST 340
SR R + L + GR L S S + +AG R L S R S
Sbjct: 110 SRSSERSCSDLSVKGRDLACNAPSISHVEEAGSGGRYRTHYSTKLASSVGEYGSRLGSPM 169
Query: 341 NSGAEALPLLVEAS-GSQSTEHAGWVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQN 399
NS + + SQS G + +S + + L +G
Sbjct: 170 NSTNHSYYGDEDVDFDSQSNRGCGITYCWSRTPRYRGSNQSSDVEEYPLLPGNGNGESDV 229
Query: 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459
+ + ++L+QK+ P++F +LVGQ +V + L + ++R ++ +Y+F+GP GTGKTS
Sbjct: 230 VTPSHEVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTILRGRITSVYLFHGPRGTGKTST 289
Query: 460 ARIFARALNCQS-LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT 518
++IFA ALNC S +PCG C+ C S+ G+ R++ E G + S L L
Sbjct: 290 SKIFAAALNCLSQAAHSRPCGLCSECKSYFSGRGRDVMETDS-GKLNRPSYLRSLIKSA- 347
Query: 519 SRPP--SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
S PP S++++F+ D+C L ++W + +D + VFILV+S L+ LP ++SR Q
Sbjct: 348 SLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFSQHSVFILVTSELEKLPRNVLSRSQ 407
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI 636
K+ F K+ DADI L I +EGI+ D+ A+ IAS+SDGSLRDAE+ L+QLSLLG+RI
Sbjct: 408 KYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIASKSDGSLRDAEIMLDQLSLLGKRI 467
Query: 637 SVPLVQELVGLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
+ L +L+G++SD++ T NTV R +M + ++P+ L+SQLA VI DI
Sbjct: 468 TTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVIRARELMRSKIDPMQLISQLANVIMDI 527
Query: 697 LAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDK 746
+AG+ + R +F R S+EEM+KLR ALK LS+AEK LR S ++
Sbjct: 528 IAGNSQESSSATRLRFLTRHT-SEEEMQKLRNALKILSDAEKHLRASKNQ 576
|
|
| TIGR_CMR|DET_0585 DET_0585 "DNA polymerase III, gamma and tau subunits, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)] | Back alignment and assigned GO terms |
|---|
Score = 450 (163.5 bits), Expect = 2.1e-41, P = 2.1e-41
Identities = 138/550 (25%), Positives = 255/550 (46%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+K+ P+T DLVGQ VA L NA+ ++ Y+F GP GTGKTS RI A+A+NC +
Sbjct: 8 RKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNCTTN 67
Query: 473 E-QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFD 531
+ + +PC C C+S G S ++ E+ N + I +L + + + + Y++++ D
Sbjct: 68 QGKGEPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALANYKVYIID 127
Query: 532 DCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
+ LS + +A+ K ++ P RV+FIL ++ + + I+SRCQ+F F ++ +D+
Sbjct: 128 EVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVSLSDMSRK 187
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLISD 650
L+ I+ EGI I+ +ALKLIA + GS RD E L+Q++ G IS+P VQ +G+ D
Sbjct: 188 LEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTEISLPQVQAALGISGD 247
Query: 651 EKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILA------GSYDFT 704
E+ N ++ L ++ G++ +L + I+ GS + T
Sbjct: 248 ERIKTLAENILKKDIKNGLQTLNAVVADGIDLKQFRRELLDYLRQIMLLNSGAEGSLELT 307
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKXXXXXXXXXXXXPDQQYV 764
D +K ++ + +E + +A+K S+ + ++ PD
Sbjct: 308 ADE--KKALQKVS-AITNLEGITKAIKAFSQLDFSSDTASSLSFELALVDASLNPD---T 361
Query: 765 LPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMNVRLENFHAENSGDFI 824
P++ + +P + A +K +AEI +K A+ S +
Sbjct: 362 APATIPPQAKLPAPKTEKPAVSNEPPQKEA-KAEIQDKTKNASEPAAASRTGAKESAPKL 420
Query: 825 DGNMRKGISLDRK-RHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGT 883
R I ++ K ++T +++ L G + ++ W +L++ +N
Sbjct: 421 T---RTAIPVEEKPKYTAPAPPKEEEKVLIGAGDVIEQ-----LKVSWKNILDQAPDNLK 472
Query: 884 KEF---LYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQA--FESVLGSPLTI 938
+ + R + VS V L+F+ K K E+ +++ + A + +G T+
Sbjct: 473 RSAAVAILRSAGVRPVSI-EKNVVTLSFKYKYHKDKIEELENRKVTAEIISNFVGRTCTL 531
Query: 939 EIRCESKIDT 948
C S+ +T
Sbjct: 532 V--CISEAET 539
|
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| TIGR_CMR|BA_0019 BA_0019 "DNA polymerase III, gamma and tau subunits" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 440 (159.9 bits), Expect = 2.5e-40, P = 2.5e-40
Identities = 101/371 (27%), Positives = 191/371 (51%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ V + L NA+++ KV Y+F GP GTGKT+ A++FA+A+
Sbjct: 3 YQALYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C SC+ +G ++ E+ N + I D+ D + + +Y++
Sbjct: 63 NCEHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V+FIL ++ +P IISRCQ+F F K+ D
Sbjct: 123 YIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISVND 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ L + + EG +++ +AL+++A ++G +RDA ++Q +S +R++ V + G
Sbjct: 183 IVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAVTG 242
Query: 647 LISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
+S + ++ + +M G +P+ M D+L Y +
Sbjct: 243 SVSQQYLGNLVECIRENDVSRALRIIDEMMGKGKDPVRFMEDFIYYYRDMLL--YQTSPQ 300
Query: 707 -RH--RRKFFRRQ-PLSKEEM--EKLRQALKTLSEAEKQLRMSNDKXXXXXXXXXXXXPD 760
H R Q + EEM E + + + TLS+ +++++ +N
Sbjct: 301 LEHMLERVMVDEQFRMLSEEMQPEVIYEIIHTLSKGQQEMKWTNHPRIFLEVVMVQLC-- 358
Query: 761 QQYVLPSSSAD 771
QQ+++ ++ AD
Sbjct: 359 QQFMMQANGAD 369
|
|
| UNIPROTKB|Q97RF7 dnaX "DNA polymerase III, gamma and tau subunits" [Streptococcus pneumoniae TIGR4 (taxid:170187)] | Back alignment and assigned GO terms |
|---|
Score = 424 (154.3 bits), Expect = 2.9e-40, Sum P(2) = 2.9e-40
Identities = 98/337 (29%), Positives = 172/337 (51%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY + F LVGQ +VA+ L AV + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 2 YQALYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAM 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + +PC C C + G ++ E+ N + I ++ D + ++Y++
Sbjct: 62 NCPNQVGGEPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARYKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ + VVFIL ++ L +P I+SR Q+F F +K D
Sbjct: 122 YIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKTQD 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLL-GQRISVPLVQELV 645
I + +I KE I + +A+++IA R++G +RDA L+Q LSL G ++ + +E+
Sbjct: 182 IKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEEIT 241
Query: 646 GLISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK 705
G IS + L ++ + G ++ L + D+L
Sbjct: 242 GTISLSALDDYVAALSQQDVPKALSCLNLLFDNGKSMTRFVTDLLHYLRDLLIVQTGGAN 301
Query: 706 DRHRRKFFRRQPLSKEEM-EKLRQALKTLSEAEKQLR 741
H F L ++ + E +R A +L++ + L+
Sbjct: 302 THHSSVFVENLALPQKNLFEMIRLATVSLADIKSSLQ 338
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| TIGR_CMR|CHY_2675 CHY_2675 "putative DNA polymerase III, gamma/tau subunits" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 417 (151.9 bits), Expect = 7.2e-38, P = 7.2e-38
Identities = 82/279 (29%), Positives = 155/279 (55%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF ++VGQ + + L NAV +V Y+F GP GTGKT+ A++ A+A+NC+
Sbjct: 5 LYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVNCE 64
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ +PC C SCI + N+ E+ N + I +L +++ +Y++++
Sbjct: 65 HPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQGKYKVYII 124
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ L+ ++++A+ K ++ P V+FIL ++ + +P I+SRCQ+F F ++ I
Sbjct: 125 DEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRISTKTIWE 184
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ IA KE ++ + +AL LIA S+G LRDA ++Q+ + +I+V +++G +S
Sbjct: 185 HLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNPKITVEDTLKVLGFVSW 244
Query: 651 EKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQL 689
K + + + ++E G++ + Q+
Sbjct: 245 RKILELISAIRENNQLKIINEIAEVVERGLDVKLFVQQI 283
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| UNIPROTKB|P09122 dnaX "DNA polymerase III subunit gamma/tau" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)] | Back alignment and assigned GO terms |
|---|
Score = 403 (146.9 bits), Expect = 3.6e-35, P = 3.6e-35
Identities = 83/291 (28%), Positives = 153/291 (52%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L + + P+ F D+VGQ + + L NA++++K Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ +PC C +C G ++ E+ N + I D+ D + + Y++
Sbjct: 63 NCEHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P +FIL ++ +P IISRCQ+F F ++
Sbjct: 123 YIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITSQA 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ + I E +++++ +L++IAS +DG +RDA L+Q +S G + V + G
Sbjct: 183 IVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLITG 242
Query: 647 LISDEKXXXXXXXXXXXXTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+S + ++ L +++ G +P L+ + D+L
Sbjct: 243 AVSQLYIGKLAKSLHDKNVSDALETLNELLQQGKDPAKLIEDMIFYFRDML 293
|
|
| TIGR_CMR|GSU_0094 GSU_0094 "DNA polymerase III, gamma and tau subunits" [Geobacter sulfurreducens PCA (taxid:243231)] | Back alignment and assigned GO terms |
|---|
Score = 405 (147.6 bits), Expect = 4.2e-35, P = 4.2e-35
Identities = 82/239 (34%), Positives = 140/239 (58%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF DL GQ V++ L NA+ ++ ++F G G GKTS ARI A+ALNC+
Sbjct: 6 LARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
P+PC C +C G S ++ E+ N + I +L +N+ +Y+IF+
Sbjct: 66 QGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRLRYKIFII 125
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS ++++A+ K ++ P V FI ++ LP I+SRCQ+F F ++ A ++
Sbjct: 126 DEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRIPLAKVVA 185
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLI 648
L++I +EGI I ++L ++A + DGS+RD+ L+Q L+ G+ ++ V L+G++
Sbjct: 186 RLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVVSLLGVV 244
|
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | eugene3.00110681 | hypothetical protein (1190 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1152 | |||
| TIGR02397 | 355 | TIGR02397, dnaX_nterm, DNA polymerase III, subunit | 1e-129 | |
| PRK14948 | 620 | PRK14948, PRK14948, DNA polymerase III subunits ga | 3e-67 | |
| COG2812 | 515 | COG2812, DnaX, DNA polymerase III, gamma/tau subun | 1e-64 | |
| PRK05563 | 559 | PRK05563, PRK05563, DNA polymerase III subunits ga | 6e-56 | |
| PRK14962 | 472 | PRK14962, PRK14962, DNA polymerase III subunits ga | 1e-55 | |
| PRK05896 | 605 | PRK05896, PRK05896, DNA polymerase III subunits ga | 3e-55 | |
| PRK14953 | 486 | PRK14953, PRK14953, DNA polymerase III subunits ga | 8e-54 | |
| PRK07133 | 725 | PRK07133, PRK07133, DNA polymerase III subunits ga | 1e-53 | |
| PRK14950 | 585 | PRK14950, PRK14950, DNA polymerase III subunits ga | 2e-52 | |
| PRK14961 | 363 | PRK14961, PRK14961, DNA polymerase III subunits ga | 5e-49 | |
| PRK06305 | 451 | PRK06305, PRK06305, DNA polymerase III subunits ga | 7e-49 | |
| PRK14965 | 576 | PRK14965, PRK14965, DNA polymerase III subunits ga | 1e-46 | |
| PRK14955 | 397 | PRK14955, PRK14955, DNA polymerase III subunits ga | 2e-46 | |
| PRK06647 | 563 | PRK06647, PRK06647, DNA polymerase III subunits ga | 7e-46 | |
| PRK14954 | 620 | PRK14954, PRK14954, DNA polymerase III subunits ga | 3e-45 | |
| PRK08451 | 535 | PRK08451, PRK08451, DNA polymerase III subunits ga | 1e-44 | |
| PRK14956 | 484 | PRK14956, PRK14956, DNA polymerase III subunits ga | 2e-44 | |
| PRK14964 | 491 | PRK14964, PRK14964, DNA polymerase III subunits ga | 7e-44 | |
| PRK14971 | 614 | PRK14971, PRK14971, DNA polymerase III subunits ga | 1e-43 | |
| PRK14963 | 504 | PRK14963, PRK14963, DNA polymerase III subunits ga | 3e-43 | |
| PRK14969 | 527 | PRK14969, PRK14969, DNA polymerase III subunits ga | 3e-42 | |
| PRK14959 | 624 | PRK14959, PRK14959, DNA polymerase III subunits ga | 5e-39 | |
| PRK06645 | 507 | PRK06645, PRK06645, DNA polymerase III subunits ga | 7e-39 | |
| PRK14970 | 367 | PRK14970, PRK14970, DNA polymerase III subunits ga | 9e-39 | |
| PRK14960 | 702 | PRK14960, PRK14960, DNA polymerase III subunits ga | 2e-37 | |
| PRK14958 | 509 | PRK14958, PRK14958, DNA polymerase III subunits ga | 3e-36 | |
| PRK08691 | 709 | PRK08691, PRK08691, DNA polymerase III subunits ga | 4e-36 | |
| PRK14957 | 546 | PRK14957, PRK14957, DNA polymerase III subunits ga | 3e-34 | |
| PRK12323 | 700 | PRK12323, PRK12323, DNA polymerase III subunits ga | 8e-34 | |
| PRK09111 | 598 | PRK09111, PRK09111, DNA polymerase III subunits ga | 2e-31 | |
| PRK07003 | 830 | PRK07003, PRK07003, DNA polymerase III subunits ga | 6e-30 | |
| PRK14951 | 618 | PRK14951, PRK14951, DNA polymerase III subunits ga | 2e-29 | |
| PRK14952 | 584 | PRK14952, PRK14952, DNA polymerase III subunits ga | 5e-29 | |
| PRK14949 | 944 | PRK14949, PRK14949, DNA polymerase III subunits ga | 2e-28 | |
| TIGR00678 | 188 | TIGR00678, holB, DNA polymerase III, delta' subuni | 9e-27 | |
| PRK07994 | 647 | PRK07994, PRK07994, DNA polymerase III subunits ga | 5e-25 | |
| pfam13177 | 161 | pfam13177, DNA_pol3_delta2, DNA polymerase III, de | 9e-25 | |
| PRK00440 | 319 | PRK00440, rfc, replication factor C small subunit; | 1e-24 | |
| PRK12402 | 337 | PRK12402, PRK12402, replication factor C small sub | 8e-23 | |
| PRK07764 | 824 | PRK07764, PRK07764, DNA polymerase III subunits ga | 2e-18 | |
| TIGR01128 | 302 | TIGR01128, holA, DNA polymerase III, delta subunit | 5e-16 | |
| PRK08699 | 325 | PRK08699, PRK08699, DNA polymerase III subunit del | 9e-14 | |
| PRK04195 | 482 | PRK04195, PRK04195, replication factor C large sub | 2e-13 | |
| COG1466 | 334 | COG1466, HolA, DNA polymerase III, delta subunit [ | 3e-13 | |
| PRK05707 | 328 | PRK05707, PRK05707, DNA polymerase III subunit del | 8e-11 | |
| PRK04132 | 846 | PRK04132, PRK04132, replication factor C small sub | 1e-09 | |
| PRK06964 | 342 | PRK06964, PRK06964, DNA polymerase III subunit del | 3e-09 | |
| PRK05574 | 340 | PRK05574, holA, DNA polymerase III subunit delta; | 3e-09 | |
| PRK07940 | 394 | PRK07940, PRK07940, DNA polymerase III subunit del | 4e-09 | |
| PRK07276 | 290 | PRK07276, PRK07276, DNA polymerase III subunit del | 7e-08 | |
| PRK06090 | 319 | PRK06090, PRK06090, DNA polymerase III subunit del | 2e-07 | |
| PRK05917 | 290 | PRK05917, PRK05917, DNA polymerase III subunit del | 2e-06 | |
| PRK07399 | 314 | PRK07399, PRK07399, DNA polymerase III subunit del | 9e-06 | |
| COG2256 | 436 | COG2256, MGS1, ATPase related to the helicase subu | 1e-05 | |
| PRK09112 | 351 | PRK09112, PRK09112, DNA polymerase III subunit del | 2e-05 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 2e-05 | |
| PRK08058 | 329 | PRK08058, PRK08058, DNA polymerase III subunit del | 2e-05 | |
| PLN03025 | 319 | PLN03025, PLN03025, replication factor C subunit; | 2e-05 | |
| PRK13342 | 413 | PRK13342, PRK13342, recombination factor protein R | 3e-05 | |
| COG0593 | 408 | COG0593, DnaA, ATPase involved in DNA replication | 4e-05 | |
| PRK13341 | 725 | PRK13341, PRK13341, recombination factor protein R | 4e-05 | |
| PRK07399 | 314 | PRK07399, PRK07399, DNA polymerase III subunit del | 1e-04 | |
| PRK07132 | 299 | PRK07132, PRK07132, DNA polymerase III subunit del | 2e-04 | |
| PRK07471 | 365 | PRK07471, PRK07471, DNA polymerase III subunit del | 3e-04 | |
| pfam00004 | 131 | pfam00004, AAA, ATPase family associated with vari | 5e-04 | |
| COG0470 | 230 | COG0470, HolB, ATPase involved in DNA replication | 0.001 | |
| cd00009 | 151 | cd00009, AAA, The AAA+ (ATPases Associated with a | 0.002 | |
| COG2255 | 332 | COG2255, RuvB, Holliday junction resolvasome, heli | 0.002 | |
| PRK08487 | 328 | PRK08487, PRK08487, DNA polymerase III subunit del | 0.003 | |
| pfam12169 | 143 | pfam12169, DNA_pol3_gamma3, DNA polymerase III sub | 0.004 | |
| pfam05496 | 231 | pfam05496, RuvB_N, Holliday junction DNA helicase | 0.004 |
| >gnl|CDD|233847 TIGR02397, dnaX_nterm, DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Score = 399 bits (1027), Expect = e-129
Identities = 139/357 (38%), Positives = 207/357 (57%), Gaps = 8/357 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P+TF D++GQ + Q L NA+ ++ Y+F GP GTGKTS ARIFA+AL
Sbjct: 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKAL 60
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYR 526
NCQ+ +PC C SC + G S ++ E+ N + I ++LDN V P +Y+
Sbjct: 61 NCQNGPDGEPCNECESCKEINSGSSLDVIEIDAASNNGVDDIREILDN-VKYAPSSGKYK 119
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ LS +++A+ K ++ P VVFIL ++ +P I+SRCQ+F F ++
Sbjct: 120 VYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKIPATILSRCQRFDFKRIPLE 179
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELV 645
DI+ L+ I KEGI+I+ +AL+LIA +DGSLRDA L+QL G I+ V EL+
Sbjct: 180 DIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELL 239
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSY 701
GL+ DEKL++LL+ L+ DT +K L I+E+GV+P + L ++ D+L S
Sbjct: 240 GLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSN 299
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
++F + K +E L + L L EA K LR SND WL LL+L
Sbjct: 300 LLAVLESEQEFLKEL-ALKLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis [DNA metabolism, DNA replication, recombination, and repair]. Length = 355 |
| >gnl|CDD|237862 PRK14948, PRK14948, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 238 bits (610), Expect = 3e-67
Identities = 129/379 (34%), Positives = 203/379 (53%), Gaps = 41/379 (10%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
++ L KY P+ F +LVGQ +A L NA++ ++ Y+F GP GTGKTS ARI A++L
Sbjct: 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSL 62
Query: 468 NCQSLEQP--KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR-PPSQ 524
NC + ++P +PCG C C + G + ++ E+ N ++I +L++ ++ P Q
Sbjct: 63 NCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIER---AQFAPVQ 119
Query: 525 --YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD---ALPHIIISRCQKFF 579
++++V D+C LS +++A+ K ++ P RVVF+L ++ D LP IISRCQ+F
Sbjct: 120 ARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT--DPQRVLP-TIISRCQRFD 176
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVP 639
F ++ ++ L IA KE IEI+ +AL L+A RS G LRDAE L+QLSLL I+
Sbjct: 177 FRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPE 236
Query: 640 LVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-- 697
V +L+G + ++ L++LL S D + + + R +++ G EPLA++ LA D+L
Sbjct: 237 AVWDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLA 296
Query: 698 ----------AGSYDFTKDRHRRKFFRRQPLSKE----EMEKLRQALKTLSEAEKQLRMS 743
A S L K +E++ Q + L +E QL+ S
Sbjct: 297 KTAPNRPDLVAVSQQT-----------WDELCKLAKQINLERILQWQQHLKGSEYQLKNS 345
Query: 744 NDKLTWLTAALLQLAPDQQ 762
WL LL L P
Sbjct: 346 TQPRLWLEVTLLGLLPSAF 364
|
Length = 620 |
| >gnl|CDD|225369 COG2812, DnaX, DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 228 bits (583), Expect = 1e-64
Identities = 116/361 (32%), Positives = 195/361 (54%), Gaps = 13/361 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P+TF D+VGQ V + LSNA+ ++ Y+F GP G GKT+ ARI A+AL
Sbjct: 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +PCG C SC + G ++ E+ N + I ++++ + + +Y++
Sbjct: 63 NCENGPTAEPCGKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ +P+ I+SRCQ+F F ++ +
Sbjct: 123 YIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPNTILSRCQRFDFKRLDLEE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I KEGI I++DAL LIA ++GSLRDA L+Q G+ I++ V++++G
Sbjct: 183 IAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILA-------- 698
L EKL+ LL+ L D ++ + ++E G +P A + L + D+L
Sbjct: 243 LTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNE 302
Query: 699 GSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ T+ R K Q +S +++L Q L K+L+ S L L++L
Sbjct: 303 LQLNTTEIEERTKELASQ-ISVLNLQRLYQLLL---PGLKELKRSLSPRLGLEMTLIRLL 358
Query: 759 P 759
Sbjct: 359 E 359
|
Length = 515 |
| >gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 6e-56
Identities = 115/375 (30%), Positives = 202/375 (53%), Gaps = 14/375 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ + + L NA+ + K+ Y+F GP GTGKTS A+IFA+A+
Sbjct: 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ--Y 525
NC + +PC C C + G ++ E+ N + I D+ D V PS+ Y
Sbjct: 63 NCLNPPDGEPCNECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDK-VKY-APSEAKY 120
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P V+FIL ++ +P I+SRCQ+F F ++
Sbjct: 121 KVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPATILSRCQRFDFKRISV 180
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
DI+ L++I KEGIE + +AL+LIA ++G +RDA L+Q +S +++ E+
Sbjct: 181 EDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL-----AG 699
G +S E L DL+D + D +K L +++ G +P + L + D+L
Sbjct: 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPE 300
Query: 700 SYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759
+ + F+ K ++E+L + + L++A++Q++ +N +L AL++L
Sbjct: 301 LEILDESTENDELFKEL-SEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLC- 358
Query: 760 DQQYVLPSSSADTSF 774
+ S DT
Sbjct: 359 --EQAAASPEYDTEL 371
|
Length = 559 |
| >gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 201 bits (512), Expect = 1e-55
Identities = 106/342 (30%), Positives = 181/342 (52%), Gaps = 24/342 (7%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ L +KY P+TF ++VGQ+ V + + NA+ + + Y+F GP GTGKT+ ARI A++LN
Sbjct: 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRI 527
C++ + +PC C +C S D G ++ E+ N + I + D V RP +Y++
Sbjct: 62 CENRKGVEPCNECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDA-VGYRPMEGKYKV 120
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ ++++A+ K ++ P VVF+L +++L+ +P IISRCQ F + D
Sbjct: 121 YIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVPPTIISRCQVIEFRNISDEL 180
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS-LLGQRISVPLVQELVG 646
II LQ +A EGIEID++AL IA R+ G LRDA LEQ+ +I++ V E +G
Sbjct: 181 IIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALG 240
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
LI E + D ++ + D L + +G + L+ Q I D++
Sbjct: 241 LIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQA---IEDLV--------- 288
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLT 748
+ L +E + Q + L ++++ + +K
Sbjct: 289 ---------EDLERERANDIIQVSRQLLNILREIKFAEEKRL 321
|
Length = 472 |
| >gnl|CDD|235638 PRK05896, PRK05896, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 203 bits (517), Expect = 3e-55
Identities = 103/333 (30%), Positives = 178/333 (53%), Gaps = 9/333 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+KY P F+ ++GQ L+ + L NA++ K+ Y+F GP G GKTS A+IFA+A+
Sbjct: 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC + + C C+ C S + +S +I E+ N + I +++DN+ +Y++
Sbjct: 63 NCLNPKDGDCCNSCSVCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +W+A+ K ++ P+ VVFI ++ +P IISRCQ++ F K+ +++
Sbjct: 123 YIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPLTIISRCQRYNFKKLNNSE 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
+ L+ IA KE I+I+ +A+ IA +DGSLRD L+QLS I + + + G
Sbjct: 183 LQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTFG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
L+ + K ++L++L D + + G+ A L ++ D+L Y TK+
Sbjct: 243 LVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLV--YQKTKN 300
Query: 707 RHRRKFFRRQPLSKEEMEKLR-QALKTLSEAEK 738
+ K LSKE+++ L + K LS
Sbjct: 301 INLLKK-----LSKEQLKTLNLEKQKLLSIEFN 328
|
Length = 605 |
| >gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 195 bits (498), Expect = 8e-54
Identities = 98/286 (34%), Positives = 169/286 (59%), Gaps = 1/286 (0%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+ F++++GQ +V + L NAV ++V Y+F GP GTGKT+ ARI A+ LNC +
Sbjct: 8 RKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNP 67
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
++ +PCG C +C+ D+G ++ E+ N + I L D + + +Y++++ D+
Sbjct: 68 QEGEPCGKCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDE 127
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
L+ ++++A+ K ++ P R +FIL ++ D +P I+SRCQ+F F K I L
Sbjct: 128 AHMLTKEAFNALLKTLEEPPPRTIFILCTTEYDKIPPTILSRCQRFIFSKPTKEQIKEYL 187
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVGLISDE 651
+ I ++E IE ++ AL L+A S+G +RDA L+Q S G+ ++++ +V+E +G++S E
Sbjct: 188 KRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEFLGIVSQE 247
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL 697
+ L+L L +D +K LR + E G QL I +IL
Sbjct: 248 SVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNIL 293
|
Length = 486 |
| >gnl|CDD|235943 PRK07133, PRK07133, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 1e-53
Identities = 120/338 (35%), Positives = 195/338 (57%), Gaps = 21/338 (6%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF D+VGQ+ + Q L N + K+ Y+F GP GTGKTS A+IFA ALNC
Sbjct: 8 LYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67
Query: 471 ---SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
L +P C CI + S +I E+ N + I +L++N+ S+Y+I
Sbjct: 68 HKTDLLEP-----CQECIE-NVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKI 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P+ V+FIL ++ + +P I+SR Q+F F ++ + +
Sbjct: 122 YIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLTILSRVQRFNFRRISEDE 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I+ L++I KE I +K+ALKLIA S GSLRDA EQ+S+ G +I++ V+EL G
Sbjct: 182 IVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEELFG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
L+S+E L++LL+L S D + L I E G++P L+ L ++ + + ++ TKD
Sbjct: 242 LVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFII--FNKTKD 299
Query: 707 RHRRKFFRRQPLSKEEMEKLR----QALKTLSEAEKQL 740
+++ S+E++EKL+ A K + L
Sbjct: 300 NSLLEYY-----SEEDLEKLKIDDDFAYKFIEILFDLL 332
|
Length = 725 |
| >gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 194 bits (494), Expect = 2e-52
Identities = 118/380 (31%), Positives = 198/380 (52%), Gaps = 20/380 (5%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L +K+ +TF +LVGQ V Q L NA+ +V Y+F GP G GKTS ARI A+A+N
Sbjct: 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63
Query: 469 CQSLEQPK--PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQY 525
C + PK PCG C C + G + ++ E+ + + ++++ V RP ++Y
Sbjct: 64 CTT-NDPKGRPCGTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIER-VQFRPALARY 121
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ LS +++A+ K ++ P +FIL ++ + +P I+SRCQ+F F +
Sbjct: 122 KVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPATILSRCQRFDFHRHSV 181
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQEL 644
AD+ L+ IA+ EGI ++ AL+ IA + GS+RDAE L+QL+ IS+ VQ L
Sbjct: 182 ADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSL 241
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL---AGS- 700
+G+ DE++ L + L+ D ++ L + G + L + ++ +G+
Sbjct: 242 LGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGAD 301
Query: 701 ---YDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRM-SNDKLTWLTA---A 753
D T D K ++ +E L + +K S+ + QLR S +L A A
Sbjct: 302 RSLLDLTADE---KAALQKVSQIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEA 358
Query: 754 LLQLAPDQQYVLPSSSADTS 773
LL P Q P+++A +
Sbjct: 359 LLVPVPAPQPAKPTAAAPSP 378
|
Length = 585 |
| >gnl|CDD|184925 PRK14961, PRK14961, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 178 bits (452), Expect = 5e-49
Identities = 87/275 (31%), Positives = 157/275 (57%), Gaps = 1/275 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ FRD++GQ + A+SN + ++ ++ G G GKT+ AR+ A++L
Sbjct: 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NCQ+ PC C C ++G ++ E+ E + ++LDN+ S S++++
Sbjct: 63 NCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P+ + FIL ++ ++ +P I+SRC +F + +
Sbjct: 123 YLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIPKTILSRCLQFKLKIISEEK 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L++I KE I+ D+ ALKLIA + GS+RDA LE LG+ I++ V +++G
Sbjct: 183 IFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
L+++++ L D L D+ T+ L I G+E
Sbjct: 243 LLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIE 277
|
Length = 363 |
| >gnl|CDD|180523 PRK06305, PRK06305, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 180 bits (458), Expect = 7e-49
Identities = 105/355 (29%), Positives = 183/355 (51%), Gaps = 17/355 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q ++KY P+TF +++GQ+ V L NA+ + Y+F G GTGKT+ ARIFA+AL
Sbjct: 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKAL 63
Query: 468 NCQSL-EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
NCQ+ E +PC C SC G S ++ E+ + E I + + ++ + S+Y+
Sbjct: 64 NCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYK 123
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
I++ D+ L+ ++++++ K ++ P+ V F L ++ + +P I+SRCQK ++ +
Sbjct: 124 IYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIHKIPGTILSRCQKMHLKRIPEE 183
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
II L IA +EGIE ++AL IA + GSLRDAE + + L + + V + +
Sbjct: 184 TIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKAL 243
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRV---IMETGVEPLALMSQLATVITDILAGSYD 702
GL+S + L L + T N + L M +GV P + L +IL Y+
Sbjct: 244 GLLSQDS---LYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN 300
Query: 703 FTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
K+ E+L + + L E+ K ++++ + T+L ++ L
Sbjct: 301 KQLSSVATKYSS---------EQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHL 346
|
Length = 451 |
| >gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 177 bits (450), Expect = 1e-46
Identities = 94/257 (36%), Positives = 147/257 (57%), Gaps = 3/257 (1%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF DL GQ V++ L NA+ +V ++F G G GKTS ARI A+ALNC+
Sbjct: 6 LARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCE 65
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYRIFV 529
+PC C C+ G+S ++ E+ N + I +L +N V P S+Y+IF+
Sbjct: 66 QGLTAEPCNVCPPCVEITEGRSVDVFEIDGASNTGVDDIRELREN-VKYLPSRSRYKIFI 124
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS ++++A+ K ++ P V FI ++ +P I+SRCQ+F F ++ I+
Sbjct: 125 IDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPITILSRCQRFDFRRIPLQKIV 184
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVGLI 648
L++IA +EGI I AL L+A + DGS+RD+ TL+Q L+ G + V EL+G++
Sbjct: 185 DRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELLGVV 244
Query: 649 SDEKLVDLLDLALSADT 665
L+D+ DT
Sbjct: 245 DRRLLLDISAAVFGRDT 261
|
Length = 576 |
| >gnl|CDD|184919 PRK14955, PRK14955, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 171 bits (435), Expect = 2e-46
Identities = 107/360 (29%), Positives = 172/360 (47%), Gaps = 26/360 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P+ F D+ Q + + + N++ +VG Y+F G G GKT+ AR+FA+A+
Sbjct: 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62
Query: 468 NCQSL--------EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + E +PCG C SC D G S NI E N + I L +N+
Sbjct: 63 NCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL------SLLG 633
F ++ +I LQ I EGI +D DAL+LI ++ GS+RDA+ L+Q+ S
Sbjct: 183 FKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGE 242
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693
I V EL+ I DE + D D V + + ++ G + + +L +
Sbjct: 243 GSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHL 302
Query: 694 TDI----------LAGSYDFTKDRHRRKFFRRQPLSKEEM-EKLRQALKTLS-EAEKQLR 741
+ L D ++R+ R + P +M + L Q K L + E Q R
Sbjct: 303 RNFLVVHNLRSTRLVERPDAVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFR 362
|
Length = 397 |
| >gnl|CDD|235845 PRK06647, PRK06647, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 174 bits (443), Expect = 7e-46
Identities = 89/269 (33%), Positives = 145/269 (53%), Gaps = 3/269 (1%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
K PR F L GQ+ V + L +++ K+ Y+F GP G GKTS AR FAR LNC +
Sbjct: 9 KRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGP 68
Query: 474 QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDC 533
P PCG C+SC S D S ++ E+ N + + + + ++ S+YR+++ D+
Sbjct: 69 TPMPCGECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEV 128
Query: 534 DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY-TL 592
LS +++A+ K ++ P +VFI ++ + LP I SRCQ F F ++ + IY L
Sbjct: 129 HMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLPATIKSRCQHFNF-RLLSLEKIYNML 187
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISDE 651
+ + ++ I+ + +ALK IA +S GS+RDA +Q+ S I++ ++ +GL DE
Sbjct: 188 KKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKMGLTGDE 247
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGV 680
L L L+ D + L + +GV
Sbjct: 248 FLEKLASSILNEDAKELLCVLDSVFLSGV 276
|
Length = 563 |
| >gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 173 bits (440), Expect = 3e-45
Identities = 97/286 (33%), Positives = 152/286 (53%), Gaps = 14/286 (4%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q + +KY P F D+ Q + + N++ +VG Y+F G G GKT+ AR+FA+A+
Sbjct: 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAV 62
Query: 468 NCQSL--------EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519
NCQ + E +PCG C SC D G S NI E N + I L +N+
Sbjct: 63 NCQRMIDDPVYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYG 122
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFF 579
+YR+++ D+ LS +++A K ++ P +FI ++ L +P I SRCQ+F
Sbjct: 123 PQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKIPATIASRCQRFN 182
Query: 580 FPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL------SLLG 633
F ++ +I LQ I EGI+ID DAL+LIA ++ GS+RDA+ L+Q+ S
Sbjct: 183 FKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAE 242
Query: 634 QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETG 679
+ I+ V EL+ I DE+ D+ D D V ++ R +++ G
Sbjct: 243 KVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNG 288
|
Length = 620 |
| >gnl|CDD|236267 PRK08451, PRK08451, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 169 bits (431), Expect = 1e-44
Identities = 90/274 (32%), Positives = 145/274 (52%), Gaps = 6/274 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
Q L KY P+ F +L+GQ V++ LS A+ ++ Y+F G G+GKTS ARIFARAL
Sbjct: 1 MQALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS--QY 525
C+ PC C C S + +I E+ N + I +L++ T PS ++
Sbjct: 61 VCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQ--TKYKPSMARF 118
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+IF+ D+ L+ ++++A+ K ++ P V FIL ++ LP I+SR Q F F ++
Sbjct: 119 KIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPATILSRTQHFRFKQIPQ 178
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQEL 644
II L+ I KEG+ + +AL+++A +GSLRD L+Q + + I+ V ++
Sbjct: 179 NSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADM 238
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMET 678
+GL+ KL D L+ D + L +E
Sbjct: 239 LGLLDPSKLEDFFQAILNQDK-EKLFELLKELED 271
|
Length = 535 |
| >gnl|CDD|184920 PRK14956, PRK14956, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (426), Expect = 2e-44
Identities = 84/272 (30%), Positives = 154/272 (56%), Gaps = 5/272 (1%)
Query: 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465
G H+ L++KY P+ FRD++ Q+L AL NA+ K+G Y+F+GP G GKT+ ARI A+
Sbjct: 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAK 62
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LNC++ +PC C SC+ +G S ++ E+ N E+I +L DN+ + +Y
Sbjct: 63 RLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKY 122
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++++ D+ L+ S++A+ K ++ P +VFIL ++ +P I+SRCQ F F K+
Sbjct: 123 KVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILSRCQDFIFKKVPL 182
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQEL 644
+ + + + E ++ D++ L IA + DGS+RD +EQ + +++ ++++
Sbjct: 183 SVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKM 242
Query: 645 VGLISDEKLVD----LLDLALSADTVNTVKNL 672
+G E L L+D + ++ +++L
Sbjct: 243 IGYHGIEFLTSFIKSLIDPDNHSKSLEILESL 274
|
Length = 484 |
| >gnl|CDD|237870 PRK14964, PRK14964, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 166 bits (423), Expect = 7e-44
Identities = 97/304 (31%), Positives = 159/304 (52%), Gaps = 6/304 (1%)
Query: 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469
NL KY P +F+DLVGQ+++ + L NA K+ + G G GKT+CARI + LNC
Sbjct: 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNC 61
Query: 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFV 529
+ PCG C++CIS ++ E+ N + I +L+N S++++++
Sbjct: 62 SNGPTSDPCGTCHNCISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYI 121
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A+ K ++ V FIL ++ + +P IISRCQ+F K+ ++
Sbjct: 122 IDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPVTIISRCQRFDLQKIPTDKLV 181
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-ISVPLVQELVGLI 648
L IA KE IE D+++LKLIA S GS+R+A LEQ ++ IS V++L+G +
Sbjct: 182 EHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCV 241
Query: 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGS----YDFT 704
L DL++ L D + + R + T P+ ++ + +I +I S DF
Sbjct: 242 DKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFL 300
Query: 705 KDRH 708
Sbjct: 301 LGED 304
|
Length = 491 |
| >gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 1e-43
Identities = 86/228 (37%), Positives = 134/228 (58%), Gaps = 13/228 (5%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL- 472
KY P TF +VGQ + L NA+ K+ Y+F GP G GKT+CARIFA+ +NCQ+L
Sbjct: 10 KYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT 69
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ---YRIFV 529
+ C C SC++ + +S NI E+ N + I +L++ + R P Q Y+I++
Sbjct: 70 ADGEACNECESCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQV---RIPPQIGKYKIYI 126
Query: 530 FDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589
D+ LS +++A K ++ P +FIL ++ + I+SRCQ F F +++ ADI+
Sbjct: 127 IDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILPTILSRCQIFDFNRIQVADIV 186
Query: 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637
LQ++ASKEGI + +AL +IA ++DG +RDA LS+ Q +S
Sbjct: 187 NHLQYVASKEGITAEPEALNVIAQKADGGMRDA------LSIFDQVVS 228
|
Length = 614 |
| >gnl|CDD|184927 PRK14963, PRK14963, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 165 bits (419), Expect = 3e-43
Identities = 102/363 (28%), Positives = 174/363 (47%), Gaps = 14/363 (3%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L Q+ P TF ++VGQ V + L A+ + ++G Y+F GP G GKT+ AR+ A A+NC
Sbjct: 4 LYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCS 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
E PKPCG C SC++ RG ++ E+ N E + DL + ++ + ++++
Sbjct: 64 G-EDPKPCGECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYIL 122
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ +S +++A+ K ++ P V+FIL ++ + +P I+SR Q F F ++ + +I
Sbjct: 123 DEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILSRTQHFRFRRLTEEEIAG 182
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISD 650
L+ + EG E + +AL+L+A +DG++RDAE LE+L LG ++ V+E +GL
Sbjct: 183 KLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQ 242
Query: 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710
E+L + D + + G L+ L L
Sbjct: 243 ERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPR-- 300
Query: 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTW---LTAALLQLAPDQQYVLPS 767
L E +L A+ L E ++ +D L+ L ALL L + +
Sbjct: 301 -------LEGAE-PRLLAAMTALDEQMERFARRSDALSLELALLHALLALGGAPSEGVAA 352
Query: 768 SSA 770
+
Sbjct: 353 VAP 355
|
Length = 504 |
| >gnl|CDD|237873 PRK14969, PRK14969, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 162 bits (413), Expect = 3e-42
Identities = 85/258 (32%), Positives = 152/258 (58%), Gaps = 1/258 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P++F +LVGQ V +AL+NA+ ++++ Y+F G G GKT+ ARI A++L
Sbjct: 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PCG C++C+ D G+ ++ EV N +++ +LLDN + ++++
Sbjct: 63 NCETGVTATPCGVCSACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ +P ++SRC +F +M
Sbjct: 123 YIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQMPPPL 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I+ LQ I +E I D AL+L+A + GS+RDA L+Q ++ G ++ V+ ++G
Sbjct: 183 IVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAMLG 242
Query: 647 LISDEKLVDLLDLALSAD 664
I + L LL+ L+ D
Sbjct: 243 AIDQDYLFALLEALLAQD 260
|
Length = 527 |
| >gnl|CDD|184923 PRK14959, PRK14959, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 5e-39
Identities = 85/285 (29%), Positives = 154/285 (54%), Gaps = 1/285 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
H +LT +Y P+TF ++ GQ V LS A +V Y+F G G GKT+ ARIFA+AL
Sbjct: 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +PC C C +G ++ E+ N + L + + + +Y++
Sbjct: 63 NCETAPTGEPCNTCEQCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
F+ D+ L+ ++++A+ K ++ P RV F+L ++ P I+SRCQ F F ++ +A
Sbjct: 123 FIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFPVTIVSRCQHFTFTRLSEAG 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
+ L + +EG++ D A++LIA R+ GS+RD+ L Q L+L R+++ + ++G
Sbjct: 183 LEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGVLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
L E + L++ + D + +R +++ GV+ + +L
Sbjct: 243 LAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVA 287
|
Length = 624 |
| >gnl|CDD|180643 PRK06645, PRK06645, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 7e-39
Identities = 72/275 (26%), Positives = 148/275 (53%), Gaps = 8/275 (2%)
Query: 403 NRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARI 462
N + ++ +KY P F +L GQ ++ + LS ++ ++ Y+ G G GKT+ ARI
Sbjct: 3 NSSNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARI 62
Query: 463 FARALNCQSL----EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT 518
A+A+NC +L K C C +CIS + +I E+ + I ++++
Sbjct: 63 IAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEY 122
Query: 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKF 578
+++IF+ D+ LS +++A+ K ++ P ++FI ++ + +P IISRCQ++
Sbjct: 123 KPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKIPATIISRCQRY 182
Query: 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR--- 635
++ +I L++I +E ++ D +AL++IA +S+GS RDA L+Q + + +
Sbjct: 183 DLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDN 242
Query: 636 -ISVPLVQELVGLISDEKLVDLLDLALSADTVNTV 669
IS ++ +++GL+ +++ ++ + +T +
Sbjct: 243 IISPQVINQMLGLVDSSVIIEFVEYIIHRETEKAI 277
|
Length = 507 |
| >gnl|CDD|184934 PRK14970, PRK14970, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 9e-39
Identities = 96/352 (27%), Positives = 170/352 (48%), Gaps = 19/352 (5%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
+KY P+TF D+VGQ+ + L NA+ + +F GP G GKT+CARI AR +N
Sbjct: 9 RKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGY 68
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ P + S NI E+ N + I +L+D + +Y+I++ D+
Sbjct: 69 DDP------------NEDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDE 116
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTL 592
LS +++A K ++ P +FIL ++ + I+SRCQ F F ++ DI L
Sbjct: 117 VHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIPTILSRCQIFDFKRITIKDIKEHL 176
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-SLLGQRISVPLVQELVGLISDE 651
IA KEGI+ + DAL +IA ++DG+LRDA +++ + G+ I+ V E + ++ +
Sbjct: 177 AGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTENLNILDYD 236
Query: 652 KLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT-----KD 706
+++ DL L + I+ G + ++ LA+ D++ T
Sbjct: 237 TYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVG 296
Query: 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+K + Q K L + ++ + + ++S ++ + AL+QLA
Sbjct: 297 EQAKKRYEVQS-QKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLA 347
|
Length = 367 |
| >gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 150 bits (381), Expect = 2e-37
Identities = 90/266 (33%), Positives = 145/266 (54%), Gaps = 2/266 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY PR F +LVGQN V++ALS+A+ R ++ Y+F G G GKT+ ARI A+ L
Sbjct: 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ PC C +C + + G+ ++ E+ E +LLDN+ + ++++
Sbjct: 62 NCETGVTSTPCEVCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKV 121
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V F+ ++ LP +ISRC +F + +
Sbjct: 122 YLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPITVISRCLQFTLRPLAVDE 181
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I L I KE I D+DA+ IA + GSLRDA +Q GQ + V+E++G
Sbjct: 182 ITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEMLG 241
Query: 647 LISDEKLVDLLDLALSADTVNTVKNL 672
LI + DL+ LA+ + V L
Sbjct: 242 LIDRTIIYDLI-LAVHQNQREKVSQL 266
|
Length = 702 |
| >gnl|CDD|184922 PRK14958, PRK14958, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 144 bits (364), Expect = 3e-36
Identities = 99/336 (29%), Positives = 169/336 (50%), Gaps = 17/336 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
HQ L +K+ PR F++++GQ V +ALSNA+ ++ + Y+F G G GKT+ +RI A+ L
Sbjct: 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC+ PC C +C D G+ ++ EV E +LLDN+ + ++++
Sbjct: 63 NCEKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V FIL ++ LP ++SRC +F ++
Sbjct: 123 YLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLPPLQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
I Q + +E +E + AL L+A ++GS+RDA L+Q G ++ + V+ ++G
Sbjct: 183 IAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTMLG 242
Query: 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706
I L D+L+ AL+A + G L +++L D D
Sbjct: 243 TIEPLLLFDILE-ALAA-------------KAGDRLLGCVTRLVEQGVDFSNALADLLSL 288
Query: 707 RHRRKFFRRQP--LSKEEMEKLRQALKTLSEAEKQL 740
H+ + P L + + E+LRQ K L + QL
Sbjct: 289 LHQIAIIQTVPEALIENDSEQLRQLAKLLDREDVQL 324
|
Length = 509 |
| >gnl|CDD|236333 PRK08691, PRK08691, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 146 bits (370), Expect = 4e-36
Identities = 80/258 (31%), Positives = 144/258 (55%), Gaps = 1/258 (0%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF DLVGQ V +AL NA+ ++ Y+ G G GKT+ ARI A++L
Sbjct: 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ + +PCG C SC D G+ ++ E+ N ++I ++L+N + +Y++
Sbjct: 63 NCENAQHGEPCGVCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS +++A+ K ++ P V FIL ++ +P ++SRC +F M
Sbjct: 123 YIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVPVTVLSRCLQFVLRNMTAQQ 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
+ L + E I + AL+L+ + GS+RDA L+Q LG +++ V++++G
Sbjct: 183 VADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQMIG 242
Query: 647 LISDEKLVDLLDLALSAD 664
+ + L +LL ++ D
Sbjct: 243 AVDKQYLYELLTGIINQD 260
|
Length = 709 |
| >gnl|CDD|184921 PRK14957, PRK14957, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (350), Expect = 3e-34
Identities = 79/269 (29%), Positives = 146/269 (54%), Gaps = 4/269 (1%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +KY P++F ++ GQ +L +A+ +KV Y+F G G GKT+ R+ A+ L
Sbjct: 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +PC C +C++ + ++ E+ E ++LDN+ +Y++
Sbjct: 63 NCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ LS S++A+ K ++ P V FIL ++ +P I+SRC + + AD
Sbjct: 123 YLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHKIPVTILSRCIQLHLKHISQAD 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELVG 646
I L+ I +KE I D+ +L+ IA + GSLRDA L+Q +S G + +++++G
Sbjct: 183 IKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQMLG 242
Query: 647 LISDEKLVDLLDLALSAD---TVNTVKNL 672
+I E++ +++ + D + +KNL
Sbjct: 243 IIDSEEVYSIINAIIDNDPKAILPAIKNL 271
|
Length = 546 |
| >gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 8e-34
Identities = 87/268 (32%), Positives = 145/268 (54%), Gaps = 19/268 (7%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ PR F LVGQ V +AL++A+ ++++ Y+F G G GKT+ +RI A++L
Sbjct: 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSL 62
Query: 468 NCQSLE-----QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522
NC + +PCG C +C D G+ + E+ N + + LLD V +
Sbjct: 63 NCTGADGEGGITAQPCGQCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTA 122
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
++++++ D+ L+ +++A+ K ++ P V FIL ++ +P ++SRC +F +
Sbjct: 123 GRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPVTVLSRCLQFNLKQ 182
Query: 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI------ 636
M I+ L I +EGI + +AL+L+A + GS+RDA LSL Q I
Sbjct: 183 MPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDA------LSLTDQAIAYSAGN 236
Query: 637 -SVPLVQELVGLISDEKLVDLLDLALSA 663
S V+ ++G I LV LLD AL+A
Sbjct: 237 VSEEAVRGMLGAIDQSYLVRLLD-ALAA 263
|
Length = 700 |
| >gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 2e-31
Identities = 87/307 (28%), Positives = 153/307 (49%), Gaps = 48/307 (15%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY P+TF DL+GQ + + L+NA ++ ++ G G GKT+ ARI ARALN +
Sbjct: 14 LARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYE 73
Query: 471 SLEQPK-----PCGFCNSC--ISHDR--------GKSR----NIKEVGPVGNFDFESILD 511
+ CG C I R S +I+E I++
Sbjct: 74 GPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIRE-----------IIE 122
Query: 512 LLDNMVTSRPPS-QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHI 570
V RP S +Y++++ D+ LS +++A+ K ++ P V FI ++ + +P
Sbjct: 123 ----SVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRKVPVT 178
Query: 571 IISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630
++SRCQ+F +++ + L IA+KEG+E++ +AL LIA ++GS+RD LS
Sbjct: 179 VLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDG------LS 232
Query: 631 LLGQ-------RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPL 683
LL Q ++ V++++GL +++DL + + D + R + G +P+
Sbjct: 233 LLDQAIAHGAGEVTAEAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPV 292
Query: 684 ALMSQLA 690
+++ LA
Sbjct: 293 VVLTDLA 299
|
Length = 598 |
| >gnl|CDD|235906 PRK07003, PRK07003, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 128 bits (322), Expect = 6e-30
Identities = 85/263 (32%), Positives = 145/263 (55%), Gaps = 14/263 (5%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+ F LVGQ V +AL++A+ ++ Y+F G G GKT+ +RIFA+AL
Sbjct: 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKAL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRI 527
NC++ +PCG C +C D G+ + E+ N + + LL+ V + +++++
Sbjct: 63 NCETGVTSQPCGVCRACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKV 122
Query: 528 FVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587
++ D+ L+ +++A+ K ++ P V FIL ++ +P ++SRC +F +M
Sbjct: 123 YMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIPVTVLSRCLQFNLKQMPAGH 182
Query: 588 IIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI--SVPLVQE-- 643
I+ L+ I +E I + AL+L+A + GS+RDA LSL Q I S V E
Sbjct: 183 IVSHLERILGEERIAFEPQALRLLARAAQGSMRDA------LSLTDQAIAYSANEVTETA 236
Query: 644 ---LVGLISDEKLVDLLDLALSA 663
++G + +V LLD AL+A
Sbjct: 237 VSGMLGALDQTYMVRLLD-ALAA 258
|
Length = 830 |
| >gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 2e-29
Identities = 85/280 (30%), Positives = 142/280 (50%), Gaps = 25/280 (8%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +KY PR+F ++VGQ V QAL+NA+ ++++ Y+F G G GKT+ +RI A++LNCQ
Sbjct: 6 LARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQ 65
Query: 471 SLE-----QPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
+ PCG C +C D G+ + E+ N + + LL+ V P Q
Sbjct: 66 GPDGQGGITATPCGVCQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYK--PVQG 123
Query: 526 RIFVF--DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583
R VF D+ L+ +++A+ K ++ P + F+L ++ +P ++SRC +F M
Sbjct: 124 RFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQKVPVTVLSRCLQFNLRPM 183
Query: 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV----- 638
++ L + + E + + AL+L+A + GS+RDA LSL Q I+
Sbjct: 184 APETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDA------LSLTDQAIAFGSGQL 237
Query: 639 --PLVQELVGLISDEKLVDLLD-LALS--ADTVNTVKNLR 673
V++++G + + L+D LA V T LR
Sbjct: 238 QEAAVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELR 277
|
Length = 618 |
| >gnl|CDD|237866 PRK14952, PRK14952, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 5e-29
Identities = 80/260 (30%), Positives = 129/260 (49%), Gaps = 5/260 (1%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
L +KY P TF ++VGQ V + LS+A+ ++ Y+F GP G GKTS ARI AR+LN
Sbjct: 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIK--EVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
C PCG C SC++ +I E+ + + +L D + S+YR
Sbjct: 61 CAQGPTATPCGVCESCVALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYR 120
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
IF+ D+ ++ ++A+ K+V+ P ++FI ++ + + I SR + F +
Sbjct: 121 IFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFRLLPPR 180
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
+ + I +EG+ +D L+ GS RD L+QL L G + Q +G
Sbjct: 181 TMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQL-LAGAADTHVTYQRALG 239
Query: 647 LI--SDEKLVDLLDLALSAD 664
L+ +D L+D AL+AD
Sbjct: 240 LLGATDVALIDDAVDALAAD 259
|
Length = 584 |
| >gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-28
Identities = 88/255 (34%), Positives = 143/255 (56%), Gaps = 16/255 (6%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P TF +VGQ+ V AL+NA+ ++++ Y+F G G GKTS AR+FA+ L
Sbjct: 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP-SQYR 526
NC+ PCG C+SC+ +G+ ++ EV + +LLDN V RP +++
Sbjct: 63 NCEQGVTATPCGVCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDN-VQYRPSRGRFK 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ LS S++A+ K ++ P V F+L ++ LP ++SRC +F +
Sbjct: 122 VYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLTQD 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI-----SVPL- 640
+I L I ++E + + +AL L+A ++GS+RDA LSL Q I V L
Sbjct: 182 EIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDA------LSLTDQAIAFGGGQVMLT 235
Query: 641 -VQELVGLISDEKLV 654
VQ ++G I DE+ V
Sbjct: 236 QVQTMLGSI-DEQHV 249
|
Length = 944 |
| >gnl|CDD|233087 TIGR00678, holB, DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 9e-27
Identities = 53/193 (27%), Positives = 99/193 (51%), Gaps = 7/193 (3%)
Query: 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490
Q L A+ + ++ Y+F GP G GK A A+AL C+ +PCG C SC + G
Sbjct: 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAG 61
Query: 491 KSRNIKEVGPVGNF-DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVD 549
++ + P G + + +L++ + + S R+ + +D + ++ + +A+ K ++
Sbjct: 62 NHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLE 121
Query: 550 RAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALK 609
P +FIL++ S + L I SRCQ FP + + + LQW+ ++GI ++A +
Sbjct: 122 EPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEAL---LQWLI-RQGIS--EEAAE 175
Query: 610 LIASRSDGSLRDA 622
L+ + + GS A
Sbjct: 176 LLLALAGGSPGAA 188
|
This model describes the N-terminal half of the delta' subunit of DNA polymerase III. Delta' is homologous to the gamma and tau subunits, which form an outgroup for phylogenetic comparison. The gamma/tau branch of the tree is much more tighly conserved than the delta' branch, and some members of that branch score more highly against this model than some proteins classisified as delta'. The noise cutoff is set to detect weakly scoring delta' subunits rather than to exclude gamma/tau subunits. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau [DNA metabolism, DNA replication, recombination, and repair]. Length = 188 |
| >gnl|CDD|236138 PRK07994, PRK07994, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-25
Identities = 91/311 (29%), Positives = 150/311 (48%), Gaps = 53/311 (17%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
Q L +K+ P+TF ++VGQ V AL+NA+ ++ Y+F G G GKT+ AR+ A+ LN
Sbjct: 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLN 63
Query: 469 CQSLEQ---PKPCGFCNSCISHDRGKSRNIKEVGPVGNF-DF-----------ESILDLL 513
C E PCG C++C R I++ G F D E +LL
Sbjct: 64 C---ETGITATPCGECDNC--------REIEQ----GRFVDLIEIDAASRTKVEDTRELL 108
Query: 514 DN---MVTSRPPSQ--YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568
DN P++ +++++ D+ LS S++A+ K ++ P V F+L ++ LP
Sbjct: 109 DNVQYA-----PARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLP 163
Query: 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ 628
I+SRC +F + I L+ I E I + AL+L+A +DGS+RDA
Sbjct: 164 VTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDA------ 217
Query: 629 LSLLGQRI-------SVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE 681
LSL Q I + V ++G + D++ + LL+ + D + + + E G +
Sbjct: 218 LSLTDQAIASGNGQVTTDDVSAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPD 277
Query: 682 PLALMSQLATV 692
L+ +L +
Sbjct: 278 WEGLLVELLEL 288
|
Length = 647 |
| >gnl|CDD|221959 pfam13177, DNA_pol3_delta2, DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 9e-25
Identities = 47/163 (28%), Positives = 86/163 (52%), Gaps = 5/163 (3%)
Query: 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484
GQ V + L N++ + K+ Y+F GP G GK A FA+AL C++ + +PCG C SC
Sbjct: 1 GQPKVIKLLKNSIKKNKLSHAYLFSGPDGVGKLELALEFAKALFCENPQDDEPCGECKSC 60
Query: 485 ISHDRGKSRNIKEVGPVGNF-DFESILDLLDNMVTSRPP--SQYRIFVFDDCDTLSPDSW 541
+ G ++ + P G + I +L++ S+ P + ++++ +D + ++ +
Sbjct: 61 KRIENGNHPDVIIIEPEGKSIKIDQIRELIEEF--SKKPFEGKKKVYIIEDAEKMTESAA 118
Query: 542 SAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
+A+ K ++ P FIL++S+ + L I SRCQ F +
Sbjct: 119 NALLKTLEEPPENTYFILLTSNPNKLLPTIRSRCQVINFKPLS 161
|
DNA polymerase III, delta subunit (EC 2.7.7.7) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalyzed reaction. The delta subunit is also known as HolA. Length = 161 |
| >gnl|CDD|234763 PRK00440, rfc, replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-24
Identities = 85/289 (29%), Positives = 136/289 (47%), Gaps = 39/289 (13%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
+KY PRT ++VGQ + + L + V + + L +F GP GTGKT+ A AR L +
Sbjct: 8 VEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHL-LFAGPPGTGKTTAALALARELYGED 66
Query: 472 LEQPKPCGFCNSCISHDRGKS--RN-IKE---VGPVGNFDFESILDLLDNMVTSRPPSQY 525
+ F S +RG RN IKE PVG F
Sbjct: 67 WRE----NFLELNASDERGIDVIRNKIKEFARTAPVGGAPF------------------- 103
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL----VSSSLDALPHIIISRCQKFFFP 581
+I D+ D L+ D+ A+ + ++ + FIL S +D P I SRC F F
Sbjct: 104 KIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIID--P--IQSRCAVFRFS 159
Query: 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLV 641
+K + L++IA EGIEI DAL+ I S+G +R A L+ + G+ ++ V
Sbjct: 160 PLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAV 219
Query: 642 QELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQL 689
++ G E++ ++++LAL+ D + LR +M + G+ ++ Q+
Sbjct: 220 YKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQI 268
|
Length = 319 |
| >gnl|CDD|237090 PRK12402, PRK12402, replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-23
Identities = 78/275 (28%), Positives = 128/275 (46%), Gaps = 36/275 (13%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
T+KY P D++GQ+ V + LS AV + L + GP G+GKT+ R AR L
Sbjct: 6 TEKYRPALLEDILGQDEVVERLSRAVDSPNLPHL-LVQGPPGSGKTAAVRALARELYGDP 64
Query: 472 LEQPKPCGFCNSCISH-----DRGKSRNIKEVGPVGNFDFESILD--------LLDNM-- 516
E N + D+GK + + E + F L +DN
Sbjct: 65 WEN-------NFTEFNVADFFDQGK-KYLVE-----DPRFAHFLGTDKRIRSSKIDNFKH 111
Query: 517 -----VTSRPPS-QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHI 570
+ RP S Y+ + D+ + L D+ A+ +++++ R FI+ + L
Sbjct: 112 VLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKLIPP 171
Query: 571 IISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630
I SRC FF D +++ L+ IA EG++ D D L+LIA + G LR A +TL+ +
Sbjct: 172 IRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA 231
Query: 631 LLGQRISVPLVQELVGLISDEKLVD-LLDLALSAD 664
L I++ E +G + +++++ LLD A + D
Sbjct: 232 LAAGEITMEAAYEALGDVGTDEVIESLLDAAEAGD 266
|
Length = 337 |
| >gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 2e-18
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 46/243 (18%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L ++Y P TF +++GQ V + LS A+ ++ Y+F GP G GKTS ARI AR+LNC
Sbjct: 5 LYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNC- 63
Query: 471 SLEQ---PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD-----LLDNM------ 516
+ PCG C+SC++ G GP G+ D I D +D+
Sbjct: 64 --VEGPTSTPCGECDSCVALAPG--------GP-GSLDVTEI-DAASHGGVDDARELRER 111
Query: 517 -----VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHII 571
SR Y+IF+ D+ ++P ++A+ K+V+ P + FI ++ D + I
Sbjct: 112 AFFAPAESR----YKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDKVIGTI 167
Query: 572 ISRCQKFFF----PK-MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
SR + F P+ M+ Y L+ I ++EG+ ++ L L+ GS+RD+ L
Sbjct: 168 RSRTHHYPFRLVPPEVMRG----Y-LERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVL 222
Query: 627 EQL 629
+QL
Sbjct: 223 DQL 225
|
Length = 824 |
| >gnl|CDD|233280 TIGR01128, holA, DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Score = 79.6 bits (197), Expect = 5e-16
Identities = 60/249 (24%), Positives = 104/249 (41%), Gaps = 31/249 (12%)
Query: 536 LSPDSWSAISKVVDRAPRRVVFILVSSSLD----------ALPHIIISRCQKFFFPKMKD 585
A+ + + P + ++ + LD AL + I C+ K+
Sbjct: 59 PGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAEIVECKT-----PKE 113
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQE 643
++ +Q K G+ ID DA++L+A +G+L LE+L+L +I++ V+E
Sbjct: 114 QELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEE 173
Query: 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL------ 697
V + + DL D L ++ L+ ++ G EPL L++ L + +L
Sbjct: 174 AVSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLA 233
Query: 698 --AGSYDFTKDRHRRKFFRRQPLSKEEM----EKLRQALKTLSEAEKQLRM--SNDKLTW 749
G + +RR+ K KL QAL+ L+EA+ QL+ D
Sbjct: 234 QQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLA 293
Query: 750 LTAALLQLA 758
L LL+LA
Sbjct: 294 LERLLLKLA 302
|
DNA polymerase III delta (holA) and delta prime (holB) subunits are distinct proteins encoded by separate genes. The delta prime subunit (holB) exhibits sequence homology to the tau and gamma subunits (dnaX), but the delta subunit (holA) does not demonstrate this same homology with dnaX. The delta, delta prime, gamma, chi and psi subunits form the gamma complex subassembly of DNA polymerase III holoenzyme, which couples ATP to assemble the ring-shaped beta subunit around DNA forming a DNA sliding clamp [DNA metabolism, DNA replication, recombination, and repair]. Length = 302 |
| >gnl|CDD|181538 PRK08699, PRK08699, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 73.4 bits (180), Expect = 9e-14
Identities = 43/150 (28%), Positives = 77/150 (51%), Gaps = 17/150 (11%)
Query: 446 YVFYGPHGTGKTSCARIFARALNCQSLEQP----KPCGFCNSCISHDRGKSRNIKEVGPV 501
++F G G GKT+ AR A+AL C E P KPCG C SC +G + E+ P+
Sbjct: 24 WLFAGKKGIGKTAFARFAAQALLC---ETPAPGHKPCGECMSCHLFGQGSHPDFYEITPL 80
Query: 502 GNFD----------FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551
+ +++ +++DN+ + R+ + ++++ + +++ KV++
Sbjct: 81 SDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEP 140
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFP 581
P +VVF+LVS + D + I SRC+K P
Sbjct: 141 PPQVVFLLVSHAADKVLPTIKSRCRKMVLP 170
|
Length = 325 |
| >gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (182), Expect = 2e-13
Identities = 65/274 (23%), Positives = 108/274 (39%), Gaps = 44/274 (16%)
Query: 412 TQKYMPRTFRDLVGQNLVAQAL-------SNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464
+KY P+T D+VG + L ++ + + YGP G GKTS A A
Sbjct: 5 VEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKAL----LLYGPPGVGKTSLAHALA 60
Query: 465 RALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
+ +E N+ S R I+ V G L ++
Sbjct: 61 NDYGWEVIE-------LNA--SDQRTADV-IERV--AGEAATSGSL----------FGAR 98
Query: 525 YRIFVFDDCDTLSP--DS--WSAISKVVDRAPRRVVFI---LVSSSLDALPHIIISRCQK 577
++ + D+ D + D AI +++ +A + ++ SL L + C
Sbjct: 99 RKLILLDEVDGIHGNEDRGGARAILELIKKAKQPIILTANDPYDPSLREL----RNACLM 154
Query: 578 FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637
F ++ I+ L+ I KEGIE D +ALK IA RS G LR A L+ ++ +++
Sbjct: 155 IEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLT 214
Query: 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
+ V+ L +E + D LD A +
Sbjct: 215 LEDVKTLGRRDREESIFDALDAVFKARNADQALE 248
|
Length = 482 |
| >gnl|CDD|224383 COG1466, HolA, DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 72.0 bits (177), Expect = 3e-13
Identities = 50/227 (22%), Positives = 109/227 (48%), Gaps = 26/227 (11%)
Query: 555 VVFILVSSSLDALPHII-----ISRCQKFFFPKMKDADIIYTLQWI---ASKEGIEIDKD 606
++ ++ S+ LD + +++ + +A++ QWI A + G++ID++
Sbjct: 107 LLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLDEAELP---QWIKKRAKELGLKIDQE 163
Query: 607 ALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEKLVDLLDLALSAD 664
A++L+ G+L +E+L+L + I++ V+E+V +++ + DL D L D
Sbjct: 164 AIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLKGD 223
Query: 665 TVNTVKNLRVIMETGVEPLALMSQLAT---VITDILAGSYDFTKDRHR----RKFFRRQP 717
++ LR ++ G EPL L++ L ++ + A + + +RR+
Sbjct: 224 VKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKK 283
Query: 718 LSKE-----EMEKLRQALKTLSEAEKQL-RMSNDKLTWLTAALLQLA 758
L K+ +++L +AL+ L++ + Q+ D + L LL+L
Sbjct: 284 LFKKAARRLSLKQLLKALRLLAQLDYQIKTGYGDPVWALELFLLRLL 330
|
Length = 334 |
| >gnl|CDD|180215 PRK05707, PRK05707, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 64.3 bits (157), Expect = 8e-11
Identities = 42/202 (20%), Positives = 84/202 (41%), Gaps = 26/202 (12%)
Query: 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI-----SH-------DRGKSR 493
Y+ +GP G GK + A A AL C++ + CG C C SH +
Sbjct: 25 YLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADK 84
Query: 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPR 553
IK + + +L+ +V + ++ + + + ++ ++ +A+ K ++
Sbjct: 85 TIK---------VDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSG 135
Query: 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIAS 613
V +L+S L I SRCQ+ P + + +LQW+ +++ ++L+
Sbjct: 136 DTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEE---SLQWLQQALPESDERERIELLTL 192
Query: 614 RSDGSLRDAEMTLEQLSLLGQR 635
LR + L + + QR
Sbjct: 193 AGGSPLR--ALQLHEQGVREQR 212
|
Length = 328 |
| >gnl|CDD|235223 PRK04132, PRK04132, replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 1e-09
Identities = 41/152 (26%), Positives = 77/152 (50%)
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
++I D+ D L+ D+ A+ + ++ V FIL + + I SRC F F ++
Sbjct: 631 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 690
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
D DI L++IA EG+E+ ++ L+ I ++G +R A L+ + L +I+ V +
Sbjct: 691 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLV 750
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIM 676
E + +++ LAL + + + LR I+
Sbjct: 751 ASRARPEDIREMMLLALKGNFLKAREKLREIL 782
|
Length = 846 |
| >gnl|CDD|235898 PRK06964, PRK06964, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-09
Identities = 60/248 (24%), Positives = 94/248 (37%), Gaps = 63/248 (25%)
Query: 448 FYGPHGTGKTSCARIFARALNCQS-LEQPKPCGFCNSCI-----SH-----------DRG 490
+G G GK A+ A+ L C++ +PCG C +C +H
Sbjct: 26 LHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85
Query: 491 KSRNIKEVGPVGNFD-------------FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS 537
E + E + LLD R+ V + L+
Sbjct: 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN 145
Query: 538 PDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFF--PKMKDADIIYTLQWI 595
+ +A+ K ++ P VF+LVS+ +D L I+SRC++F P + A W+
Sbjct: 146 VAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAA-----AAWL 200
Query: 596 ASKEGIEIDKDA---------LKLIASRSDGS--LRDAEMTLEQLSLLG----------- 633
A+ +G+ D DA L +A SD + LRD TL QL+
Sbjct: 201 AA-QGVA-DADALLAEAGGAPLAALALASDENRPLRD--WTLGQLAAGAACDAFACAETL 256
Query: 634 QRISVPLV 641
Q++ VP V
Sbjct: 257 QKLPVPAV 264
|
Length = 342 |
| >gnl|CDD|235511 PRK05574, holA, DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Score = 59.4 bits (145), Expect = 3e-09
Identities = 43/166 (25%), Positives = 80/166 (48%), Gaps = 19/166 (11%)
Query: 593 QWI---ASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGL 647
QWI ++G++ID AL+L+A R +G+L LE+L+LL +I++ V+E V
Sbjct: 153 QWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPD 212
Query: 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA------TVITDILAGSY 701
+ + DL+D L+ ++ L + G EP+ L++ L + + Y
Sbjct: 213 SARFDVFDLVDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGY 272
Query: 702 DFTK--DRH-----RRKFFRRQPLSKEEMEKLRQALKTLSEAEKQL 740
+ R K R L + +++L+QA++ L+E + Q+
Sbjct: 273 PLQQLAKELRVWPYRVKLALRA-LQRLSLKQLKQAIQLLAETDYQI 317
|
Length = 340 |
| >gnl|CDD|236134 PRK07940, PRK07940, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 59.5 bits (145), Expect = 4e-09
Identities = 60/172 (34%), Positives = 89/172 (51%), Gaps = 21/172 (12%)
Query: 420 FRDLVGQNLVAQALSNAVM--RRKVGLL-------YVFYGPHGTGKTSCARIFARALNCQ 470
+ DLVGQ V L A R V ++F GP G+G++ AR FA AL C
Sbjct: 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCT 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI-LDLLDNMVT--SRPPS--QY 525
++P CG C +C + G +++ V P G SI +D + +VT +R PS ++
Sbjct: 64 DPDEP-GCGECRACRTVLAGTHPDVRVVAPEG----LSIGVDEVRELVTIAARRPSTGRW 118
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL-DALPHIIISRCQ 576
RI V +D D L+ + +A+ K V+ P R V++L + S D LP I SRC+
Sbjct: 119 RIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVLP-TIRSRCR 169
|
Length = 394 |
| >gnl|CDD|180916 PRK07276, PRK07276, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 7e-08
Identities = 46/199 (23%), Positives = 90/199 (45%), Gaps = 21/199 (10%)
Query: 460 ARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN-FDFESILDLLDNMVT 518
A A++L C+ E PCG C SC ++G+ ++ + P G ++I +L+ N
Sbjct: 39 ALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98
Query: 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKF 578
S + ++F+ D D + ++ +++ KV++ + L+++ + + I SR Q F
Sbjct: 99 SGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158
Query: 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV 638
FPK + L + ++G+ K +L+A + S +AE + L
Sbjct: 159 HFPKNEA-----YLIQLLEQKGLL--KTQAELLAKLAQ-STSEAEKLAQNKKFL------ 204
Query: 639 PLVQELVGLISDEKLVDLL 657
EL+ E+ V +L
Sbjct: 205 ----ELIDQA--ERFVTIL 217
|
Length = 290 |
| >gnl|CDD|180394 PRK06090, PRK06090, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 54.0 bits (130), Expect = 2e-07
Identities = 48/177 (27%), Positives = 79/177 (44%), Gaps = 36/177 (20%)
Query: 451 PHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI-----SH---------DRGKSRNIK 496
G G S +F+RAL CQ+ + + CGFC+SC +H GKS ++
Sbjct: 33 DEGLGVESLVELFSRALLCQNYQS-EACGFCHSCELMQSGNHPDLHVIKPEKEGKSITVE 91
Query: 497 EVGPVGNFDFESILDLLDNMVTSRPPSQ---YRIFVFDDCDTLSPDSWSAISKVVDRAPR 553
++ ES SQ YR+FV + D ++ + +A+ K ++
Sbjct: 92 QIRQCNRLAQES--------------SQLNGYRLFVIEPADAMNESASNALLKTLEEPAP 137
Query: 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610
+F+LV+ + L I+SRCQ++ A +QW+ +GI + ALKL
Sbjct: 138 NCLFLLVTHNQKRLLPTIVSRCQQWVVTPPSTAQ---AMQWL-KGQGITVPAYALKL 190
|
Length = 319 |
| >gnl|CDD|102059 PRK05917, PRK05917, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 50.6 bits (121), Expect = 2e-06
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
S Y+I++ + D ++ D+ SA KV++ P+ V IL S+ LP I SR P
Sbjct: 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPM 153
Query: 583 MK-----DADIIYTLQWIASKEGI 601
+ DI Y + + KE +
Sbjct: 154 EEKTLVSKEDIAYLIGYAQGKESV 177
|
Length = 290 |
| >gnl|CDD|236011 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 48.7 bits (117), Expect = 9e-06
Identities = 18/59 (30%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
Query: 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478
F +L+GQ L + L+ A+ + ++ Y+F GP G G+ A F L Q P
Sbjct: 3 FANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG--SPSKN 59
|
Length = 314 |
| >gnl|CDD|225165 COG2256, MGS1, ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 48.8 bits (117), Expect = 1e-05
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 398 QNLGDNRNGRHQNLTQKYMPRTFRDLVGQ-NLVAQALSNAVMRRKV--GLLY--VFYGPH 452
+L + N L ++ P++ ++VGQ +L+ + +RR V G L+ + +GP
Sbjct: 1 TSLDLSDNEFRMPLAERLRPKSLDEVVGQEHLLGE---GKPLRRAVEAGHLHSMILWGPP 57
Query: 453 GTGKTSCARIFARALNC 469
GTGKT+ AR+ A N
Sbjct: 58 GTGKTTLARLIAGTTNA 74
|
Length = 436 |
| >gnl|CDD|169667 PRK09112, PRK09112, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 48.1 bits (115), Expect = 2e-05
Identities = 37/136 (27%), Positives = 61/136 (44%), Gaps = 14/136 (10%)
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
+RI + D D ++ ++ +AI K ++ P R +FIL+S S L I SRCQ +
Sbjct: 142 WRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHSSGRLLPTIRSRCQPISLKPLD 201
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA-----------EMTLEQLSLLG 633
D ++ L + S + D + + + RS GS+R A T++QL L G
Sbjct: 202 DDELKKALSHLGSSQ--GSDGEITEALLQRSKGSVRKALLLLNYGGLEIIATIDQL-LAG 258
Query: 634 QRISVPLVQELVGLIS 649
+L +S
Sbjct: 259 SGPDARKAHKLADALS 274
|
Length = 351 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 48.2 bits (116), Expect = 2e-05
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 4/63 (6%)
Query: 410 NLTQKYMPRTFRDLVGQ-NLVAQ--ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466
L ++ P+T ++VGQ +L+ L + ++ + + +GP GTGKT+ ARI A A
Sbjct: 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSM-ILWGPPGTGKTTLARIIAGA 59
Query: 467 LNC 469
+
Sbjct: 60 TDA 62
|
Length = 413 |
| >gnl|CDD|181214 PRK08058, PRK08058, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 48.0 bits (115), Expect = 2e-05
Identities = 45/177 (25%), Positives = 83/177 (46%), Gaps = 5/177 (2%)
Query: 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485
Q +V + L N++ + ++ Y+F G GTGK + A A++L C +PCG C +C
Sbjct: 11 QPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCK 70
Query: 486 SHDRGKSRNIKEVGPVGN-FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAI 544
D G ++ V P G + I L + S S ++++ + D ++ + +++
Sbjct: 71 RIDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSL 130
Query: 545 SKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGI 601
K ++ IL++ + + I+SRCQ F + +I LQ +EGI
Sbjct: 131 LKFLEEPSGGTTAILLTENKHQILPTILSRCQVVEFRPLPPESLIQRLQ----EEGI 183
|
Length = 329 |
| >gnl|CDD|178596 PLN03025, PLN03025, replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 2e-05
Identities = 55/221 (24%), Positives = 91/221 (41%), Gaps = 39/221 (17%)
Query: 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKV----GLL--YVFYGPHGTGKTSCARIFARA 466
+KY P D+VG +AV R +V G + + GP GTGKT+ A
Sbjct: 5 EKYRPTKLDDIVGN-------EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHE 57
Query: 467 LNCQS-----LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521
L + LE N+ S DRG + V N I VT P
Sbjct: 58 LLGPNYKEAVLE-------LNA--SDDRG-------IDVVRN----KIKMFAQKKVT-LP 96
Query: 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581
P +++I + D+ D+++ + A+ + ++ F L ++ + I SRC F
Sbjct: 97 PGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFS 156
Query: 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622
++ D +I+ L + E + + L+ I +DG +R A
Sbjct: 157 RLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQA 197
|
Length = 319 |
| >gnl|CDD|237355 PRK13342, PRK13342, recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Score = 47.8 bits (115), Expect = 3e-05
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 571 IISRCQKFFFPKMKDADIIYTLQWIASKEG---IEIDKDALKLIASRSDGSLRDAEMTLE 627
++SR Q F + + DI L+ + +E+D +AL +A ++G R A LE
Sbjct: 139 LLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLE 198
Query: 628 QLSLLGQRISVPLVQELVG 646
+L I++ L++E +
Sbjct: 199 LAALGVDSITLELLEEALQ 217
|
Length = 413 |
| >gnl|CDD|223666 COG0593, DnaA, ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 47.3 bits (113), Expect = 4e-05
Identities = 54/269 (20%), Positives = 91/269 (33%), Gaps = 60/269 (22%)
Query: 408 HQNLTQKYMPRTFRDLV--GQNLVAQALSNAVMRRKVGLLY---VFYGPHGTGKTSCARI 462
L KY TF + V N +A A + AV G Y YG G GKT +
Sbjct: 77 PSGLNPKY---TFDNFVVGPSNRLAYAAAKAV-AENPGGAYNPLFIYGGVGLGKTHLLQA 132
Query: 463 FARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDN-MVTSRP 521
G + + + +F + + L DN M +
Sbjct: 133 IGNEAL-------------------ANGPNARVVYLTSE-DFTNDFVKALRDNEMEKFKE 172
Query: 522 PSQYRIFVFDDCDTLSPD------------SWSAISK----VVDRAPRRVVFIL--VSSS 563
+ + DD L+ + K DR P+ + + + S
Sbjct: 173 KYSLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSR 232
Query: 564 LDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAE 623
L+ + I D + L+ A GIEI + L+ +A R D ++R+ E
Sbjct: 233 LEWGLVVEIE--------PPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELE 284
Query: 624 MTLEQL----SLLGQRISVPLVQELVGLI 648
L +L + I++ LV+E++ +
Sbjct: 285 GALNRLDAFALFTKRAITIDLVKEILKDL 313
|
Length = 408 |
| >gnl|CDD|237354 PRK13341, PRK13341, recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Score = 47.4 bits (113), Expect = 4e-05
Identities = 24/73 (32%), Positives = 36/73 (49%), Gaps = 4/73 (5%)
Query: 401 GDNRNGRHQNLTQKYMPRTFRDLVGQN-LVAQA--LSNAVMRRKVGLLYVFYGPHGTGKT 457
G+ + L + PRT + VGQ+ ++ + L A+ +VG L + YGP G GKT
Sbjct: 8 GEQMSQSEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSL-ILYGPPGVGKT 66
Query: 458 SCARIFARALNCQ 470
+ ARI A
Sbjct: 67 TLARIIANHTRAH 79
|
Length = 725 |
| >gnl|CDD|236011 PRK07399, PRK07399, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 44.9 bits (107), Expect = 1e-04
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 12/144 (8%)
Query: 519 SRPP--SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
SRPP + ++ V +D +T++ + +A+ K ++ P IL++ S ++L I+SRCQ
Sbjct: 117 SRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE-PGNGTLILIAPSPESLLPTIVSRCQ 175
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI 636
F ++ D + L+ + +E + I+ L +A S G+ +EQL Q I
Sbjct: 176 IIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQGSPGAAIAN---IEQL----QSI 228
Query: 637 SVPLVQELVGLISDEKLVDLLDLA 660
L+Q+L ++ L+LA
Sbjct: 229 PPELLQKLEQPPKS--PLEALELA 250
|
Length = 314 |
| >gnl|CDD|180855 PRK07132, PRK07132, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 2e-04
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
SQ +I + + + S +A+ K ++ P+ F+L + +++ + I+SRCQ F +
Sbjct: 89 SQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKE 148
Query: 583 MKDADI 588
I
Sbjct: 149 PDQQKI 154
|
Length = 299 |
| >gnl|CDD|236022 PRK07471, PRK07471, DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Score = 44.2 bits (105), Expect = 3e-04
Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 14/155 (9%)
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
R+ + D D ++ ++ +A+ KV++ P R +F+LVS + L I SRC+K +
Sbjct: 143 RVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRCRKLRLRPLAP 202
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D+I L G ++ D +A+ ++GS+ A L L G + L + L
Sbjct: 203 EDVIDALA----AAGPDLPDDPRAALAALAEGSVGRA------LRLAGGD-GLALYRRLT 251
Query: 646 GLISDEKLVD---LLDLALSADTVNTVKNLRVIME 677
L+ +D L LA +A + + ++
Sbjct: 252 ALLDTLPRLDRRALHALADAAAGRDRAARFALFLD 286
|
Length = 365 |
| >gnl|CDD|215649 pfam00004, AAA, ATPase family associated with various cellular activities (AAA) | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 5e-04
Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 37/148 (25%)
Query: 448 FYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507
YGP GTGKT+ A+ A+ L +E + +S G+S +
Sbjct: 3 LYGPPGTGKTTLAKAVAKELGAPFIEIS-----GSELVSKYVGESE-------------K 44
Query: 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--------------PR 553
+ +L + P + D+ D L+ S R
Sbjct: 45 RLRELFEAAKKLAPC----VIFIDEIDALAGSRGSGGDSESRRVVNQLLTELDGFTSSLS 100
Query: 554 RVVFILVSSSLDAL-PHIIISRCQKFFF 580
+V+ I ++ D L P ++ R +
Sbjct: 101 KVIVIAATNRPDKLDPALLRGRFDRIIE 128
|
AAA family proteins often perform chaperone-like functions that assist in the assembly, operation, or disassembly of protein complexes. Length = 131 |
| >gnl|CDD|223546 COG0470, HolB, ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 0.001
Identities = 26/113 (23%), Positives = 44/113 (38%), Gaps = 11/113 (9%)
Query: 552 PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLI 611
P+ FIL+++ + I SRCQ+ F + I L+ L+ I
Sbjct: 42 PKNTRFILITNDPSKILPTIRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEI 90
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSAD 664
A+ ++G R A L+ L+ L L+ L + L+L A+
Sbjct: 91 AAVAEGDARKAINPLQALAALEIGEESIYEALLLALPESLAQLAALELLKLAE 143
|
Length = 230 |
| >gnl|CDD|99707 cd00009, AAA, The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Score = 39.8 bits (93), Expect = 0.002
Identities = 32/168 (19%), Positives = 54/168 (32%), Gaps = 26/168 (15%)
Query: 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483
VGQ +AL A+ L YGP GTGKT+ AR A L
Sbjct: 1 VGQEEAIEALREALELPPPKNLL-LYGPPGTGKTTLARAIANELFRPGA----------P 49
Query: 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSA 543
+ + V + +L L ++ + D+ D+LS + +A
Sbjct: 50 FLYLNASDLLEGLVVAELFGHFLVRLLFELAEK------AKPGVLFIDEIDSLSRGAQNA 103
Query: 544 ISKVVD------RAPRRVVFILVSSSLDALPHI--IISRC-QKFFFPK 582
+ +V++ V I ++ + R + P
Sbjct: 104 LLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. Length = 151 |
| >gnl|CDD|225164 COG2255, RuvB, Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.4 bits (98), Expect = 0.002
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 417 PRTFRDLVGQNLVAQALS---NAVMRRKVGLLYV-FYGPHGTGKTSCARIFARALN 468
P+T + +GQ V + L A +R L +V +GP G GKT+ A I A L
Sbjct: 22 PKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELG 77
|
Length = 332 |
| >gnl|CDD|236276 PRK08487, PRK08487, DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Score = 40.7 bits (96), Expect = 0.003
Identities = 44/203 (21%), Positives = 91/203 (44%), Gaps = 23/203 (11%)
Query: 572 ISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631
+ +FF P ++A + LQ A + G++ID++AL + + L A LE+L++
Sbjct: 126 EAVFVRFFKPNAREA--LELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAI 183
Query: 632 LGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691
L + I++ +QELV + D + L+ + +L ++E G +AL++ L
Sbjct: 184 LNEPITLKDIQELVFGLGSVSFEDFFEKLLNKKDIK--DDLEKLLEEGFNEIALLNSLER 241
Query: 692 VITDI--------LAGSYD------FTKDRHRRKFFRRQPLS-KEEMEKLRQALKTLSEA 736
+ + G D + + + +Q + KE + ++ + L E
Sbjct: 242 FFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKE--AQYKEIFELLLEW 299
Query: 737 EKQLRMS--NDKLTWLTAALLQL 757
E +L+ DK +L + L+++
Sbjct: 300 ELELKTGQKIDKNLFLLSTLIKI 322
|
Length = 328 |
| >gnl|CDD|152604 pfam12169, DNA_pol3_gamma3, DNA polymerase III subunits gamma and tau domain III | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.004
Identities = 13/62 (20%), Positives = 30/62 (48%)
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITD 695
+S V++++GL +++DLL+ L D + R G +P+ ++ L ++
Sbjct: 1 VSAAQVRDMLGLADRGRVIDLLEAILEGDAAAALAEFRDQYAAGADPVVVLRDLLELLHL 60
Query: 696 IL 697
+
Sbjct: 61 LT 62
|
This domain family is found in bacteria, and is approximately 110 amino acids in length. The family is found in association with pfam00004. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. Length = 143 |
| >gnl|CDD|203260 pfam05496, RuvB_N, Holliday junction DNA helicase ruvB N-terminus | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 0.004
Identities = 20/56 (35%), Positives = 27/56 (48%), Gaps = 4/56 (7%)
Query: 417 PRTFRDLVGQNLVAQALS---NAVMRRKVGLLYV-FYGPHGTGKTSCARIFARALN 468
PR + +GQ V + L A +R L +V YGP G GKT+ A I A +
Sbjct: 20 PRRLDEYIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMG 75
|
The RuvB protein makes up part of the RuvABC revolvasome which catalyzes the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalyzed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein. This family contains the N-terminal region of the protein. Length = 231 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1152 | |||
| PRK05563 | 559 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14948 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14952 | 584 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14965 | 576 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14958 | 509 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| COG2812 | 515 | DnaX DNA polymerase III, gamma/tau subunits [DNA r | 100.0 | |
| PRK14950 | 585 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14954 | 620 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14971 | 614 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK07764 | 824 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14951 | 618 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK09111 | 598 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14963 | 504 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14964 | 491 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14969 | 527 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14956 | 484 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK08691 | 709 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK06645 | 507 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07994 | 647 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07003 | 830 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14957 | 546 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14960 | 702 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06647 | 563 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK12323 | 700 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14955 | 397 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14961 | 363 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14953 | 486 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14949 | 944 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK14962 | 472 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| TIGR02397 | 355 | dnaX_nterm DNA polymerase III, subunit gamma and t | 100.0 | |
| KOG0989 | 346 | consensus Replication factor C, subunit RFC4 [Repl | 100.0 | |
| PRK14959 | 624 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PRK06305 | 451 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK07133 | 725 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK08451 | 535 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK05896 | 605 | DNA polymerase III subunits gamma and tau; Validat | 100.0 | |
| PRK14970 | 367 | DNA polymerase III subunits gamma and tau; Provisi | 100.0 | |
| PLN03025 | 319 | replication factor C subunit; Provisional | 100.0 | |
| PRK00440 | 319 | rfc replication factor C small subunit; Reviewed | 100.0 | |
| PRK12402 | 337 | replication factor C small subunit 2; Reviewed | 100.0 | |
| PRK07940 | 394 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK05564 | 313 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| KOG0991 | 333 | consensus Replication factor C, subunit RFC2 [Repl | 100.0 | |
| PRK08058 | 329 | DNA polymerase III subunit delta'; Validated | 100.0 | |
| PRK07993 | 334 | DNA polymerase III subunit delta'; Validated | 99.98 | |
| PHA02544 | 316 | 44 clamp loader, small subunit; Provisional | 99.97 | |
| PRK06871 | 325 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK05707 | 328 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK07399 | 314 | DNA polymerase III subunit delta'; Validated | 99.97 | |
| PRK07471 | 365 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK06964 | 342 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| COG2256 | 436 | MGS1 ATPase related to the helicase subunit of the | 99.96 | |
| PRK06090 | 319 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK04195 | 482 | replication factor C large subunit; Provisional | 99.96 | |
| PRK13342 | 413 | recombination factor protein RarA; Reviewed | 99.96 | |
| PRK09112 | 351 | DNA polymerase III subunit delta'; Validated | 99.96 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 99.95 | |
| PRK08769 | 319 | DNA polymerase III subunit delta'; Validated | 99.95 | |
| PRK08699 | 325 | DNA polymerase III subunit delta'; Validated | 99.95 | |
| PRK13341 | 725 | recombination factor protein RarA/unknown domain f | 99.95 | |
| PRK07452 | 326 | DNA polymerase III subunit delta; Validated | 99.94 | |
| PRK07914 | 320 | hypothetical protein; Reviewed | 99.94 | |
| PRK07276 | 290 | DNA polymerase III subunit delta'; Validated | 99.94 | |
| PRK05629 | 318 | hypothetical protein; Validated | 99.94 | |
| PRK05907 | 311 | hypothetical protein; Provisional | 99.94 | |
| PRK06585 | 343 | holA DNA polymerase III subunit delta; Reviewed | 99.93 | |
| TIGR00678 | 188 | holB DNA polymerase III, delta' subunit. At positi | 99.93 | |
| PRK05917 | 290 | DNA polymerase III subunit delta'; Validated | 99.93 | |
| PRK05574 | 340 | holA DNA polymerase III subunit delta; Reviewed | 99.93 | |
| KOG2035 | 351 | consensus Replication factor C, subunit RFC3 [Cell | 99.93 | |
| COG0470 | 325 | HolB ATPase involved in DNA replication [DNA repli | 99.93 | |
| PF13177 | 162 | DNA_pol3_delta2: DNA polymerase III, delta subunit | 99.93 | |
| PRK08487 | 328 | DNA polymerase III subunit delta; Validated | 99.92 | |
| KOG2028 | 554 | consensus ATPase related to the helicase subunit o | 99.92 | |
| TIGR01128 | 302 | holA DNA polymerase III, delta subunit. subunit ar | 99.92 | |
| KOG0990 | 360 | consensus Replication factor C, subunit RFC5 [Repl | 99.91 | |
| PRK07132 | 299 | DNA polymerase III subunit delta'; Validated | 99.91 | |
| PF05496 | 233 | RuvB_N: Holliday junction DNA helicase ruvB N-term | 99.9 | |
| PRK05818 | 261 | DNA polymerase III subunit delta'; Validated | 99.9 | |
| TIGR02902 | 531 | spore_lonB ATP-dependent protease LonB. Members of | 99.89 | |
| PRK00080 | 328 | ruvB Holliday junction DNA helicase RuvB; Reviewed | 99.88 | |
| COG1466 | 334 | HolA DNA polymerase III, delta subunit [DNA replic | 99.88 | |
| TIGR00635 | 305 | ruvB Holliday junction DNA helicase, RuvB subunit. | 99.84 | |
| COG2255 | 332 | RuvB Holliday junction resolvasome, helicase subun | 99.83 | |
| KOG1969 | 877 | consensus DNA replication checkpoint protein CHL12 | 99.82 | |
| COG1223 | 368 | Predicted ATPase (AAA+ superfamily) [General funct | 99.78 | |
| COG2204 | 464 | AtoC Response regulator containing CheY-like recei | 99.76 | |
| PRK08903 | 227 | DnaA regulatory inactivator Hda; Validated | 99.75 | |
| COG3829 | 560 | RocR Transcriptional regulator containing PAS, AAA | 99.75 | |
| COG1222 | 406 | RPT1 ATP-dependent 26S proteasome regulatory subun | 99.74 | |
| TIGR00602 | 637 | rad24 checkpoint protein rad24. This family is bas | 99.73 | |
| TIGR02881 | 261 | spore_V_K stage V sporulation protein K. Members o | 99.72 | |
| PRK06581 | 263 | DNA polymerase III subunit delta'; Validated | 99.71 | |
| KOG0734 | 752 | consensus AAA+-type ATPase containing the peptidas | 99.71 | |
| COG3604 | 550 | FhlA Transcriptional regulator containing GAF, AAA | 99.71 | |
| PRK08084 | 235 | DNA replication initiation factor; Provisional | 99.7 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 99.69 | |
| TIGR03420 | 226 | DnaA_homol_Hda DnaA regulatory inactivator Hda. Me | 99.68 | |
| PRK08727 | 233 | hypothetical protein; Validated | 99.68 | |
| TIGR02928 | 365 | orc1/cdc6 family replication initiation protein. M | 99.68 | |
| TIGR02880 | 284 | cbbX_cfxQ probable Rubsico expression protein CbbX | 99.67 | |
| PTZ00112 | 1164 | origin recognition complex 1 protein; Provisional | 99.67 | |
| PRK06893 | 229 | DNA replication initiation factor; Validated | 99.67 | |
| CHL00181 | 287 | cbbX CbbX; Provisional | 99.66 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.64 | |
| TIGR01241 | 495 | FtsH_fam ATP-dependent metalloprotease FtsH. HflB( | 99.64 | |
| PRK00411 | 394 | cdc6 cell division control protein 6; Reviewed | 99.63 | |
| PF03215 | 519 | Rad17: Rad17 cell cycle checkpoint protein | 99.63 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 99.62 | |
| CHL00176 | 638 | ftsH cell division protein; Validated | 99.6 | |
| TIGR00362 | 405 | DnaA chromosomal replication initiator protein Dna | 99.59 | |
| PRK06620 | 214 | hypothetical protein; Validated | 99.59 | |
| PRK03992 | 389 | proteasome-activating nucleotidase; Provisional | 99.59 | |
| PRK00149 | 450 | dnaA chromosomal replication initiation protein; R | 99.57 | |
| PRK05642 | 234 | DNA replication initiation factor; Validated | 99.57 | |
| PTZ00454 | 398 | 26S protease regulatory subunit 6B-like protein; P | 99.57 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.57 | |
| KOG0731 | 774 | consensus AAA+-type ATPase containing the peptidas | 99.56 | |
| TIGR02329 | 526 | propionate_PrpR propionate catabolism operon regul | 99.56 | |
| PTZ00361 | 438 | 26 proteosome regulatory subunit 4-like protein; P | 99.55 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 99.55 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.55 | |
| PRK15424 | 538 | propionate catabolism operon regulatory protein Pr | 99.55 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.54 | |
| PRK14088 | 440 | dnaA chromosomal replication initiation protein; P | 99.54 | |
| TIGR01817 | 534 | nifA Nif-specific regulatory protein. This model r | 99.54 | |
| PRK09087 | 226 | hypothetical protein; Validated | 99.54 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.53 | |
| TIGR03345 | 852 | VI_ClpV1 type VI secretion ATPase, ClpV1 family. M | 99.53 | |
| PRK12422 | 445 | chromosomal replication initiation protein; Provis | 99.53 | |
| KOG1970 | 634 | consensus Checkpoint RAD17-RFC complex, RAD17/RAD2 | 99.53 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.52 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.52 | |
| TIGR01242 | 364 | 26Sp45 26S proteasome subunit P45 family. Many pro | 99.52 | |
| TIGR02974 | 329 | phageshock_pspF psp operon transcriptional activat | 99.52 | |
| TIGR03689 | 512 | pup_AAA proteasome ATPase. In the Actinobacteria, | 99.52 | |
| PRK11608 | 326 | pspF phage shock protein operon transcriptional ac | 99.52 | |
| TIGR00763 | 775 | lon ATP-dependent protease La. This protein is ind | 99.52 | |
| PRK14087 | 450 | dnaA chromosomal replication initiation protein; P | 99.52 | |
| COG1224 | 450 | TIP49 DNA helicase TIP49, TBP-interacting protein | 99.51 | |
| PRK14086 | 617 | dnaA chromosomal replication initiation protein; P | 99.51 | |
| COG1221 | 403 | PspF Transcriptional regulators containing an AAA- | 99.51 | |
| PRK05022 | 509 | anaerobic nitric oxide reductase transcription reg | 99.51 | |
| PRK11388 | 638 | DNA-binding transcriptional regulator DhaR; Provis | 99.51 | |
| PRK10820 | 520 | DNA-binding transcriptional regulator TyrR; Provis | 99.5 | |
| PF00308 | 219 | Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013 | 99.49 | |
| KOG0733 | 802 | consensus Nuclear AAA ATPase (VCP subfamily) [Post | 99.49 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.49 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.49 | |
| TIGR02639 | 731 | ClpA ATP-dependent Clp protease ATP-binding subuni | 99.48 | |
| PF06068 | 398 | TIP49: TIP49 C-terminus; InterPro: IPR010339 This | 99.47 | |
| COG0465 | 596 | HflB ATP-dependent Zn proteases [Posttranslational | 99.46 | |
| TIGR02030 | 337 | BchI-ChlI magnesium chelatase ATPase subunit I. Th | 99.45 | |
| PLN00020 | 413 | ribulose bisphosphate carboxylase/oxygenase activa | 99.45 | |
| COG1474 | 366 | CDC6 Cdc6-related protein, AAA superfamily ATPase | 99.43 | |
| PRK13407 | 334 | bchI magnesium chelatase subunit I; Provisional | 99.42 | |
| COG3283 | 511 | TyrR Transcriptional regulator of aromatic amino a | 99.42 | |
| KOG0738 | 491 | consensus AAA+-type ATPase [Posttranslational modi | 99.42 | |
| CHL00206 | 2281 | ycf2 Ycf2; Provisional | 99.41 | |
| COG0464 | 494 | SpoVK ATPases of the AAA+ class [Posttranslational | 99.41 | |
| KOG1942 | 456 | consensus DNA helicase, TBP-interacting protein [R | 99.4 | |
| PRK15429 | 686 | formate hydrogenlyase transcriptional activator Fh | 99.4 | |
| CHL00081 | 350 | chlI Mg-protoporyphyrin IX chelatase | 99.39 | |
| KOG0737 | 386 | consensus AAA+-type ATPase [Posttranslational modi | 99.39 | |
| TIGR02915 | 445 | PEP_resp_reg putative PEP-CTERM system response re | 99.39 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 99.39 | |
| PRK08485 | 206 | DNA polymerase III subunit delta'; Validated | 99.38 | |
| PRK10733 | 644 | hflB ATP-dependent metalloprotease; Reviewed | 99.38 | |
| TIGR02442 | 633 | Cob-chelat-sub cobaltochelatase subunit. A number | 99.38 | |
| KOG0652 | 424 | consensus 26S proteasome regulatory complex, ATPas | 99.37 | |
| TIGR02640 | 262 | gas_vesic_GvpN gas vesicle protein GvpN. Members o | 99.37 | |
| PRK05342 | 412 | clpX ATP-dependent protease ATP-binding subunit Cl | 99.37 | |
| PRK10923 | 469 | glnG nitrogen regulation protein NR(I); Provisiona | 99.36 | |
| PRK10787 | 784 | DNA-binding ATP-dependent protease La; Provisional | 99.36 | |
| COG0593 | 408 | DnaA ATPase involved in DNA replication initiation | 99.35 | |
| COG0466 | 782 | Lon ATP-dependent Lon protease, bacterial type [Po | 99.35 | |
| TIGR03015 | 269 | pepcterm_ATPase putative secretion ATPase, PEP-CTE | 99.34 | |
| PRK11034 | 758 | clpA ATP-dependent Clp protease ATP-binding subuni | 99.34 | |
| KOG0743 | 457 | consensus AAA+-type ATPase [Posttranslational modi | 99.34 | |
| KOG0727 | 408 | consensus 26S proteasome regulatory complex, ATPas | 99.32 | |
| KOG0726 | 440 | consensus 26S proteasome regulatory complex, ATPas | 99.32 | |
| KOG2004 | 906 | consensus Mitochondrial ATP-dependent protease PIM | 99.31 | |
| TIGR03346 | 852 | chaperone_ClpB ATP-dependent chaperone ClpB. Membe | 99.31 | |
| KOG0728 | 404 | consensus 26S proteasome regulatory complex, ATPas | 99.31 | |
| KOG0742 | 630 | consensus AAA+-type ATPase [Posttranslational modi | 99.31 | |
| KOG0729 | 435 | consensus 26S proteasome regulatory complex, ATPas | 99.3 | |
| PF00004 | 132 | AAA: ATPase family associated with various cellula | 99.3 | |
| PRK10865 | 857 | protein disaggregation chaperone; Provisional | 99.29 | |
| PRK15115 | 444 | response regulator GlrR; Provisional | 99.29 | |
| PRK11361 | 457 | acetoacetate metabolism regulatory protein AtoC; P | 99.28 | |
| KOG0739 | 439 | consensus AAA+-type ATPase [Posttranslational modi | 99.27 | |
| PF05673 | 249 | DUF815: Protein of unknown function (DUF815); Inte | 99.26 | |
| PF12169 | 143 | DNA_pol3_gamma3: DNA polymerase III subunits gamma | 99.26 | |
| TIGR01243 | 733 | CDC48 AAA family ATPase, CDC48 subfamily. This sub | 99.26 | |
| TIGR00382 | 413 | clpX endopeptidase Clp ATP-binding regulatory subu | 99.25 | |
| CHL00095 | 821 | clpC Clp protease ATP binding subunit | 99.25 | |
| COG3284 | 606 | AcoR Transcriptional activator of acetoin/glycerol | 99.23 | |
| TIGR01818 | 463 | ntrC nitrogen regulation protein NR(I). This model | 99.22 | |
| KOG0740 | 428 | consensus AAA+-type ATPase [Posttranslational modi | 99.21 | |
| PRK05201 | 443 | hslU ATP-dependent protease ATP-binding subunit Hs | 99.18 | |
| PRK14700 | 300 | recombination factor protein RarA; Provisional | 99.18 | |
| KOG2680 | 454 | consensus DNA helicase TIP49, TBP-interacting prot | 99.17 | |
| PRK10365 | 441 | transcriptional regulatory protein ZraR; Provision | 99.14 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 99.14 | |
| TIGR00390 | 441 | hslU ATP-dependent protease HslVU, ATPase subunit. | 99.14 | |
| KOG0732 | 1080 | consensus AAA+-type ATPase containing the bromodom | 99.13 | |
| PRK13531 | 498 | regulatory ATPase RavA; Provisional | 99.13 | |
| KOG1968 | 871 | consensus Replication factor C, subunit RFC1 (larg | 99.09 | |
| PF06144 | 172 | DNA_pol3_delta: DNA polymerase III, delta subunit; | 99.08 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 99.07 | |
| KOG0651 | 388 | consensus 26S proteasome regulatory complex, ATPas | 99.04 | |
| COG2607 | 287 | Predicted ATPase (AAA+ superfamily) [General funct | 99.04 | |
| KOG0730 | 693 | consensus AAA+-type ATPase [Posttranslational modi | 99.0 | |
| KOG1514 | 767 | consensus Origin recognition complex, subunit 1, a | 98.98 | |
| KOG2227 | 529 | consensus Pre-initiation complex, subunit CDC6, AA | 98.98 | |
| PF01078 | 206 | Mg_chelatase: Magnesium chelatase, subunit ChlI; I | 98.96 | |
| PF01637 | 234 | Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 | 98.96 | |
| PRK11331 | 459 | 5-methylcytosine-specific restriction enzyme subun | 98.96 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 98.94 | |
| PF00158 | 168 | Sigma54_activat: Sigma-54 interaction domain; Inte | 98.93 | |
| TIGR00764 | 608 | lon_rel lon-related putative ATP-dependent proteas | 98.93 | |
| COG1239 | 423 | ChlI Mg-chelatase subunit ChlI [Coenzyme metabolis | 98.91 | |
| PHA02244 | 383 | ATPase-like protein | 98.9 | |
| COG0714 | 329 | MoxR-like ATPases [General function prediction onl | 98.89 | |
| TIGR01650 | 327 | PD_CobS cobaltochelatase, CobS subunit. This model | 98.88 | |
| COG1219 | 408 | ClpX ATP-dependent protease Clp, ATPase subunit [P | 98.87 | |
| PRK13765 | 637 | ATP-dependent protease Lon; Provisional | 98.87 | |
| smart00350 | 509 | MCM minichromosome maintenance proteins. | 98.86 | |
| PF07724 | 171 | AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR | 98.86 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 98.86 | |
| PF14840 | 125 | DNA_pol3_delt_C: Processivity clamp loader gamma c | 98.84 | |
| COG0542 | 786 | clpA ATP-binding subunits of Clp protease and DnaK | 98.82 | |
| TIGR00368 | 499 | Mg chelatase-related protein. The N-terminal end m | 98.81 | |
| TIGR02031 | 589 | BchD-ChlD magnesium chelatase ATPase subunit D. Th | 98.8 | |
| smart00763 | 361 | AAA_PrkA PrkA AAA domain. This is a family of PrkA | 98.79 | |
| PF14532 | 138 | Sigma54_activ_2: Sigma-54 interaction domain; PDB: | 98.78 | |
| KOG0744 | 423 | consensus AAA+-type ATPase [Posttranslational modi | 98.76 | |
| PF07728 | 139 | AAA_5: AAA domain (dynein-related subfamily); Inte | 98.73 | |
| PTZ00111 | 915 | DNA replication licensing factor MCM4; Provisional | 98.71 | |
| COG0606 | 490 | Predicted ATPase with chaperone activity [Posttran | 98.66 | |
| KOG0735 | 952 | consensus AAA+-type ATPase [Posttranslational modi | 98.59 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 98.56 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.52 | |
| PF07726 | 131 | AAA_3: ATPase family associated with various cellu | 98.49 | |
| COG1220 | 444 | HslU ATP-dependent protease HslVU (ClpYQ), ATPase | 98.49 | |
| PF05621 | 302 | TniB: Bacterial TniB protein; InterPro: IPR008868 | 98.48 | |
| KOG2170 | 344 | consensus ATPase of the AAA+ superfamily [General | 98.45 | |
| KOG0745 | 564 | consensus Putative ATP-dependent Clp-type protease | 98.43 | |
| PF00931 | 287 | NB-ARC: NB-ARC domain; InterPro: IPR002182 This is | 98.33 | |
| PRK08116 | 268 | hypothetical protein; Validated | 98.3 | |
| PRK12377 | 248 | putative replication protein; Provisional | 98.29 | |
| COG4650 | 531 | RtcR Sigma54-dependent transcription regulator con | 98.28 | |
| PF13173 | 128 | AAA_14: AAA domain | 98.25 | |
| KOG0736 | 953 | consensus Peroxisome assembly factor 2 containing | 98.25 | |
| KOG0478 | 804 | consensus DNA replication licensing factor, MCM4 c | 98.23 | |
| PRK07952 | 244 | DNA replication protein DnaC; Validated | 98.22 | |
| PRK13406 | 584 | bchD magnesium chelatase subunit D; Provisional | 98.19 | |
| PRK15455 | 644 | PrkA family serine protein kinase; Provisional | 98.1 | |
| COG3267 | 269 | ExeA Type II secretory pathway, component ExeA (pr | 98.09 | |
| COG1241 | 682 | MCM2 Predicted ATPase involved in replication cont | 98.04 | |
| PRK06526 | 254 | transposase; Provisional | 98.01 | |
| PF05729 | 166 | NACHT: NACHT domain | 97.95 | |
| PF13401 | 131 | AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S | 97.93 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 97.91 | |
| PRK08181 | 269 | transposase; Validated | 97.89 | |
| KOG0482 | 721 | consensus DNA replication licensing factor, MCM7 c | 97.89 | |
| PRK06921 | 266 | hypothetical protein; Provisional | 97.87 | |
| KOG0741 | 744 | consensus AAA+-type ATPase [Posttranslational modi | 97.86 | |
| PF12774 | 231 | AAA_6: Hydrolytic ATP binding site of dynein motor | 97.84 | |
| PF12775 | 272 | AAA_7: P-loop containing dynein motor region D3; P | 97.83 | |
| KOG0480 | 764 | consensus DNA replication licensing factor, MCM6 c | 97.82 | |
| PRK06835 | 329 | DNA replication protein DnaC; Validated | 97.81 | |
| PRK08939 | 306 | primosomal protein DnaI; Reviewed | 97.78 | |
| PRK04132 | 846 | replication factor C small subunit; Provisional | 97.78 | |
| KOG0477 | 854 | consensus DNA replication licensing factor, MCM2 c | 97.78 | |
| PHA00729 | 226 | NTP-binding motif containing protein | 97.77 | |
| PF13191 | 185 | AAA_16: AAA ATPase domain; PDB: 2V1U_A. | 97.75 | |
| KOG0481 | 729 | consensus DNA replication licensing factor, MCM5 c | 97.74 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 97.7 | |
| TIGR02688 | 449 | conserved hypothetical protein TIGR02688. Members | 97.7 | |
| COG1618 | 179 | Predicted nucleotide kinase [Nucleotide transport | 97.7 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.65 | |
| COG1484 | 254 | DnaC DNA replication protein [DNA replication, rec | 97.64 | |
| PF03266 | 168 | NTPase_1: NTPase; InterPro: IPR004948 This entry r | 97.61 | |
| PF00493 | 331 | MCM: MCM2/3/5 family This family extends the MCM d | 97.59 | |
| PHA02774 | 613 | E1; Provisional | 97.58 | |
| PF01695 | 178 | IstB_IS21: IstB-like ATP binding protein; InterPro | 97.56 | |
| PF00910 | 107 | RNA_helicase: RNA helicase; InterPro: IPR000605 He | 97.54 | |
| PF14516 | 331 | AAA_35: AAA-like domain | 97.48 | |
| PRK04296 | 190 | thymidine kinase; Provisional | 97.45 | |
| TIGR01618 | 220 | phage_P_loop phage nucleotide-binding protein. Thi | 97.45 | |
| COG1373 | 398 | Predicted ATPase (AAA+ superfamily) [General funct | 97.41 | |
| PRK09183 | 259 | transposase/IS protein; Provisional | 97.37 | |
| KOG2228 | 408 | consensus Origin recognition complex, subunit 4 [R | 97.35 | |
| KOG2543 | 438 | consensus Origin recognition complex, subunit 5 [R | 97.34 | |
| PF13604 | 196 | AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL | 97.33 | |
| COG5271 | 4600 | MDN1 AAA ATPase containing von Willebrand factor t | 97.29 | |
| ) proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor" target="_blank" href="http://www.ncbi.nlm.nih.gov/Structure/cdd/cddsrv.cgi?uid=PF06309">PF06309 | 127 | Torsin: Torsin; InterPro: IPR010448 This family co | 97.27 | |
| PHA02624 | 647 | large T antigen; Provisional | 97.25 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 97.22 | |
| PF07693 | 325 | KAP_NTPase: KAP family P-loop domain; InterPro: IP | 97.21 | |
| PRK12723 | 388 | flagellar biosynthesis regulator FlhF; Provisional | 97.1 | |
| PRK13695 | 174 | putative NTPase; Provisional | 96.96 | |
| PF05970 | 364 | PIF1: PIF1-like helicase; InterPro: IPR010285 This | 96.95 | |
| PF00448 | 196 | SRP54: SRP54-type protein, GTPase domain; InterPro | 96.9 | |
| PF09848 | 352 | DUF2075: Uncharacterized conserved protein (DUF207 | 96.89 | |
| PF10443 | 431 | RNA12: RNA12 protein; InterPro: IPR018850 Mitochon | 96.87 | |
| PF10236 | 309 | DAP3: Mitochondrial ribosomal death-associated pro | 96.82 | |
| PRK10536 | 262 | hypothetical protein; Provisional | 96.82 | |
| PRK11889 | 436 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.79 | |
| KOG0922 | 674 | consensus DEAH-box RNA helicase [RNA processing an | 96.77 | |
| KOG3347 | 176 | consensus Predicted nucleotide kinase/nuclear prot | 96.72 | |
| PRK14974 | 336 | cell division protein FtsY; Provisional | 96.67 | |
| TIGR01448 | 720 | recD_rel helicase, putative, RecD/TraA family. Thi | 96.67 | |
| PTZ00202 | 550 | tuzin; Provisional | 96.66 | |
| PF08542 | 89 | Rep_fac_C: Replication factor C C-terminal domain; | 96.65 | |
| PF13479 | 213 | AAA_24: AAA domain | 96.62 | |
| PRK05703 | 424 | flhF flagellar biosynthesis regulator FlhF; Valida | 96.61 | |
| TIGR01447 | 586 | recD exodeoxyribonuclease V, alpha subunit. This f | 96.6 | |
| PF05272 | 198 | VirE: Virulence-associated protein E; InterPro: IP | 96.6 | |
| PF08298 | 358 | AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 Thi | 96.58 | |
| TIGR02768 | 744 | TraA_Ti Ti-type conjugative transfer relaxase TraA | 96.56 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 96.53 | |
| PF03969 | 362 | AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 | 96.51 | |
| PRK09435 | 332 | membrane ATPase/protein kinase; Provisional | 96.47 | |
| PRK00771 | 437 | signal recognition particle protein Srp54; Provisi | 96.38 | |
| PRK10875 | 615 | recD exonuclease V subunit alpha; Provisional | 96.35 | |
| PRK13889 | 988 | conjugal transfer relaxase TraA; Provisional | 96.34 | |
| KOG1051 | 898 | consensus Chaperone HSP104 and related ATP-depende | 96.26 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 96.23 | |
| smart00487 | 201 | DEXDc DEAD-like helicases superfamily. | 96.21 | |
| PRK08118 | 167 | topology modulation protein; Reviewed | 96.21 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 96.2 | |
| PF13207 | 121 | AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6 | 96.18 | |
| PRK13826 | 1102 | Dtr system oriT relaxase; Provisional | 96.18 | |
| PRK12724 | 432 | flagellar biosynthesis regulator FlhF; Provisional | 96.15 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 96.14 | |
| cd00046 | 144 | DEXDc DEAD-like helicases superfamily. A diverse f | 96.09 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 96.09 | |
| KOG1808 | 1856 | consensus AAA ATPase containing von Willebrand fac | 96.06 | |
| COG4088 | 261 | Predicted nucleotide kinase [Nucleotide transport | 96.05 | |
| COG2842 | 297 | Uncharacterized ATPase, putative transposase [Gene | 96.05 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 96.03 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 95.98 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 95.96 | |
| COG1419 | 407 | FlhF Flagellar GTP-binding protein [Cell motility | 95.94 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 95.92 | |
| PRK12727 | 559 | flagellar biosynthesis regulator FlhF; Provisional | 95.9 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 95.88 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 95.87 | |
| TIGR01613 | 304 | primase_Cterm phage/plasmid primase, P4 family, C- | 95.86 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 95.86 | |
| PF05707 | 193 | Zot: Zonular occludens toxin (Zot); InterPro: IPR0 | 95.8 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 95.8 | |
| PF12780 | 268 | AAA_8: P-loop containing dynein motor region D4; I | 95.74 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 95.74 | |
| cd00561 | 159 | CobA_CobO_BtuR ATP:corrinoid adenosyltransferase B | 95.72 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 95.71 | |
| TIGR02237 | 209 | recomb_radB DNA repair and recombination protein R | 95.7 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 95.69 | |
| PRK13900 | 332 | type IV secretion system ATPase VirB11; Provisiona | 95.69 | |
| COG1643 | 845 | HrpA HrpA-like helicases [DNA replication, recombi | 95.69 | |
| PF01745 | 233 | IPT: Isopentenyl transferase; InterPro: IPR002648 | 95.68 | |
| PRK05986 | 191 | cob(I)alamin adenolsyltransferase/cobinamide ATP-d | 95.67 | |
| COG1067 | 647 | LonB Predicted ATP-dependent protease [Posttransla | 95.67 | |
| PF00519 | 432 | PPV_E1_C: Papillomavirus helicase; InterPro: IPR00 | 95.64 | |
| COG3899 | 849 | Predicted ATPase [General function prediction only | 95.62 | |
| KOG0923 | 902 | consensus mRNA splicing factor ATP-dependent RNA h | 95.58 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 95.58 | |
| cd02021 | 150 | GntK Gluconate kinase (GntK) catalyzes the phospho | 95.56 | |
| cd01428 | 194 | ADK Adenylate kinase (ADK) catalyzes the reversibl | 95.54 | |
| cd03115 | 173 | SRP The signal recognition particle (SRP) mediates | 95.53 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 95.53 | |
| PRK12726 | 407 | flagellar biosynthesis regulator FlhF; Provisional | 95.52 | |
| PF02562 | 205 | PhoH: PhoH-like protein; InterPro: IPR003714 PhoH | 95.49 | |
| PRK07261 | 171 | topology modulation protein; Provisional | 95.48 | |
| cd01393 | 226 | recA_like RecA is a bacterial enzyme which has rol | 95.48 | |
| PF04665 | 241 | Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 | 95.48 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 95.47 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 95.44 | |
| cd01123 | 235 | Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of r | 95.44 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 95.42 | |
| CHL00195 | 489 | ycf46 Ycf46; Provisional | 95.4 | |
| PRK13709 | 1747 | conjugal transfer nickase/helicase TraI; Provision | 95.38 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 95.37 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 95.34 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 95.34 | |
| PRK10867 | 433 | signal recognition particle protein; Provisional | 95.34 | |
| TIGR01425 | 429 | SRP54_euk signal recognition particle protein SRP5 | 95.33 | |
| PF00437 | 270 | T2SE: Type II/IV secretion system protein; InterPr | 95.32 | |
| PRK06547 | 172 | hypothetical protein; Provisional | 95.32 | |
| PRK06731 | 270 | flhF flagellar biosynthesis regulator FlhF; Valida | 95.29 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 95.28 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 95.27 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 95.24 | |
| cd01129 | 264 | PulE-GspE PulE/GspE The type II secretory pathway | 95.24 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 95.24 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 95.2 | |
| TIGR03878 | 259 | thermo_KaiC_2 KaiC domain protein, AF_0795 family. | 95.2 | |
| KOG0479 | 818 | consensus DNA replication licensing factor, MCM3 c | 95.19 | |
| PF13086 | 236 | AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV | 95.19 | |
| TIGR00064 | 272 | ftsY signal recognition particle-docking protein F | 95.19 | |
| PRK04220 | 301 | 2-phosphoglycerate kinase; Provisional | 95.16 | |
| PRK12338 | 319 | hypothetical protein; Provisional | 95.16 | |
| TIGR00708 | 173 | cobA cob(I)alamin adenosyltransferase. Alternate n | 95.16 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 95.15 | |
| COG1936 | 180 | Predicted nucleotide kinase (related to CMP and AM | 95.14 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 95.14 | |
| PRK14721 | 420 | flhF flagellar biosynthesis regulator FlhF; Provis | 95.13 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 95.12 | |
| TIGR01967 | 1283 | DEAH_box_HrpA ATP-dependent helicase HrpA. This mo | 95.11 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 95.1 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 95.08 | |
| PRK00131 | 175 | aroK shikimate kinase; Reviewed | 95.05 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 95.04 | |
| PF01443 | 234 | Viral_helicase1: Viral (Superfamily 1) RNA helicas | 95.0 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 94.99 | |
| TIGR02760 | 1960 | TraI_TIGR conjugative transfer relaxase protein Tr | 94.98 | |
| PRK14712 | 1623 | conjugal transfer nickase/helicase TraI; Provision | 94.98 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 94.98 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 94.96 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 94.93 | |
| PRK12337 | 475 | 2-phosphoglycerate kinase; Provisional | 94.92 | |
| COG2804 | 500 | PulE Type II secretory pathway, ATPase PulE/Tfp pi | 94.91 | |
| PRK09376 | 416 | rho transcription termination factor Rho; Provisio | 94.89 | |
| TIGR03574 | 249 | selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Mem | 94.89 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 94.87 | |
| PRK05800 | 170 | cobU adenosylcobinamide kinase/adenosylcobinamide- | 94.82 | |
| cd01878 | 204 | HflX HflX subfamily. A distinct conserved domain w | 94.8 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 94.75 | |
| cd02020 | 147 | CMPK Cytidine monophosphate kinase (CMPK) catalyze | 94.74 | |
| PF01926 | 116 | MMR_HSR1: 50S ribosome-binding GTPase; InterPro: I | 94.72 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 94.71 | |
| PHA02530 | 300 | pseT polynucleotide kinase; Provisional | 94.71 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 94.7 | |
| PF13238 | 129 | AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB | 94.7 | |
| PRK11664 | 812 | ATP-dependent RNA helicase HrpB; Provisional | 94.68 | |
| PRK11823 | 446 | DNA repair protein RadA; Provisional | 94.68 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 94.67 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 94.63 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 94.61 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 94.56 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 94.56 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 94.52 | |
| COG2805 | 353 | PilT Tfp pilus assembly protein, pilus retraction | 94.52 | |
| cd01121 | 372 | Sms Sms (bacterial radA) DNA repair protein. This | 94.48 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 94.44 | |
| PLN03187 | 344 | meiotic recombination protein DMC1 homolog; Provis | 94.43 | |
| PRK00091 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 94.43 | |
| PRK11131 | 1294 | ATP-dependent RNA helicase HrpA; Provisional | 94.42 | |
| TIGR00959 | 428 | ffh signal recognition particle protein. This mode | 94.4 | |
| TIGR02236 | 310 | recomb_radA DNA repair and recombination protein R | 94.38 | |
| PF13245 | 76 | AAA_19: Part of AAA domain | 94.37 | |
| cd01394 | 218 | radB RadB. The archaeal protein radB shares simila | 94.33 | |
| PRK04301 | 317 | radA DNA repair and recombination protein RadA; Va | 94.32 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 94.27 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 94.26 | |
| cd01852 | 196 | AIG1 AIG1 (avrRpt2-induced gene 1). This represent | 94.19 | |
| cd04140 | 165 | ARHI_like ARHI subfamily. ARHI (A Ras homolog memb | 94.18 | |
| PRK09361 | 225 | radB DNA repair and recombination protein RadB; Pr | 94.17 | |
| cd04101 | 164 | RabL4 RabL4 (Rab-like4) subfamily. RabL4s are nove | 94.16 | |
| TIGR02238 | 313 | recomb_DMC1 meiotic recombinase Dmc1. This model d | 94.15 | |
| TIGR03499 | 282 | FlhF flagellar biosynthetic protein FlhF. | 94.14 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 94.13 | |
| PRK03839 | 180 | putative kinase; Provisional | 94.11 | |
| cd04177 | 168 | RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the | 94.08 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 94.08 | |
| cd04106 | 162 | Rab23_lke Rab23-like subfamily. Rab23 is a member | 94.07 | |
| TIGR02012 | 321 | tigrfam_recA protein RecA. This model describes or | 94.05 | |
| cd00544 | 169 | CobU Adenosylcobinamide kinase / adenosylcobinamid | 94.04 | |
| TIGR01970 | 819 | DEAH_box_HrpB ATP-dependent helicase HrpB. This mo | 94.02 | |
| PHA00350 | 399 | putative assembly protein | 94.01 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 93.99 | |
| PLN02840 | 421 | tRNA dimethylallyltransferase | 93.97 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 93.86 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 93.84 | |
| cd04124 | 161 | RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily | 93.81 | |
| PRK06696 | 223 | uridine kinase; Validated | 93.77 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 93.76 | |
| cd00464 | 154 | SK Shikimate kinase (SK) is the fifth enzyme in th | 93.75 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 93.74 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 93.73 | |
| cd04119 | 168 | RJL RJL (RabJ-Like) subfamily. RJLs are found in m | 93.68 | |
| PRK05973 | 237 | replicative DNA helicase; Provisional | 93.66 | |
| PLN02772 | 398 | guanylate kinase | 93.64 | |
| PRK13947 | 171 | shikimate kinase; Provisional | 93.6 | |
| PRK12608 | 380 | transcription termination factor Rho; Provisional | 93.59 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 93.57 | |
| PF02367 | 123 | UPF0079: Uncharacterised P-loop hydrolase UPF0079; | 93.57 | |
| TIGR00150 | 133 | HI0065_YjeE ATPase, YjeE family. Members of this f | 93.57 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 93.56 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 93.56 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 93.51 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 93.5 | |
| PF00406 | 151 | ADK: Adenylate kinase; InterPro: IPR000850 Adenyla | 93.5 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 93.5 | |
| TIGR02782 | 299 | TrbB_P P-type conjugative transfer ATPase TrbB. Th | 93.5 | |
| PRK14529 | 223 | adenylate kinase; Provisional | 93.49 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 93.47 | |
| PLN03186 | 342 | DNA repair protein RAD51 homolog; Provisional | 93.47 |
| >PRK05563 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-57 Score=542.75 Aligned_cols=502 Identities=26% Similarity=0.461 Sum_probs=398.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|++|++||||++|++|+||+++++.|.+++..++++|+||||||+|||||++|++||++++|.......||+.|..|.
T Consensus 1 m~y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~ 80 (559)
T PRK05563 1 MMYQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICK 80 (559)
T ss_pred CCcHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999999888889999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++.++.++++++++++.+.+.|..++++||||||+|+|+.+++++|+++||+||.+++||++|+.++
T Consensus 81 ~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ 160 (559)
T PRK05563 81 AITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPH 160 (559)
T ss_pred HHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChh
Confidence 99999999999999998899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.+.|.+++..++..||..+++++|+.++++++..|+..++|++|+++++|+++..+ ++.||.++|.++
T Consensus 161 ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V~~v 240 (559)
T PRK05563 161 KIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDALEV 240 (559)
T ss_pred hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 456999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc---h--hHHHHHHhCCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD---R--HRRKFFRRQPLS 719 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g---~--~~~~~~~r~~ls 719 (1152)
++.+..+.+|++++++..+|...++..+..|+..|.++..++..|..+||+++..+...... . .....+ ...+.
T Consensus 241 lg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~-~~~a~ 319 (559)
T PRK05563 241 TGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELF-KELSE 319 (559)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHH-HHHHH
Confidence 99999999999999999999999999999999999999999999999999999877542211 0 111122 22456
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCccccc
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEI 799 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1152)
.++.+.|.+++..|.+++.++|++.+++++||+++++||...+ ..+... . . ...+.+++. .+
T Consensus 320 ~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~~~-~~~~~~--~----~--------~~~~~~~~~---~l 381 (559)
T PRK05563 320 KLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQAA-ASPEYD--T----E--------LEVLLQRVE---QL 381 (559)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhhcc-CCcccc--C----C--------HHHHHHHHH---HH
Confidence 8999999999999999999999999999999999999996322 001110 0 0 011111000 01
Q ss_pred ccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhc
Q 036794 800 SNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQ 879 (1152)
Q Consensus 800 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~ 879 (1152)
+. .+++....+... ...............................++...+...+...|.+||+.++
T Consensus 382 ~~---------~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~l~~~~ 448 (559)
T PRK05563 382 EQ---------ELKQLKAQPVGV----APEQKEKKKEKKKNKKKKYKVPRGKIYKVLKEATRQDLELLKNVWGEILESLK 448 (559)
T ss_pred HH---------HHHhcccCCccc----ccccccccccccccccccccCCcchhhhhhhhccHHHHHHHHHHHHHHHHHHh
Confidence 11 000000000000 00000000000000000000000000001223344466778888999999998
Q ss_pred cch--HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhh---HHHhHHHHHHHHHHHhCCcEEEEEEEe
Q 036794 880 NNG--TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSK---AEKFKDQILQAFESVLGSPLTIEIRCE 943 (1152)
Q Consensus 880 ~~~--l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~---~e~~~~~Ie~~~~~vlg~~v~v~i~~~ 943 (1152)
... ++++| .+|+|++++. .+++|.|.++.++.+ .+.....|++++.+++|.+++|.+..+
T Consensus 449 ~~~~~~~~~l-~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (559)
T PRK05563 449 AQRKSLRALL-VNSEPVAASE---DTVVLAFEYEIHFEKAMLDKELNDTIENILSKLLGKSVEIVAVPE 513 (559)
T ss_pred cccHHHHHHH-hcCeEeeccC---CEEEEEeCcHHHHHHHHhChHHHHHHHHHHHHHhCCCeEEEEEEh
Confidence 553 55555 6799998886 479999999876543 222338999999999999999997766
|
|
| >PRK14948 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-56 Score=534.74 Aligned_cols=510 Identities=27% Similarity=0.459 Sum_probs=406.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--CCCCCCCCCcc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--QPKPCGFCNSC 484 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--~~epcg~c~~c 484 (1152)
.|++|.+||||++|++++||+.++..|.+++..++++|+|||+||+|+|||++|++||+.++|.... ...||+.|..|
T Consensus 2 ~~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 2 AYEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred CcchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 4889999999999999999999999999999999999999999999999999999999999997543 24799999999
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+..+.+.+++++++....+++.++++++.+...|+++.++||||||+|+|+.+++++||++||+++.+++||++|+++
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~ 161 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDP 161 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCCh
Confidence 99999999999999987778999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
+++.++|++||+.+.|.+++.+++..+|.+++.++|+.++++++..|+.+++|++|+++++|++++++.+.||.++|+++
T Consensus 162 ~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~~~It~e~V~~l 241 (620)
T PRK14948 162 QRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLPGPITPEAVWDL 241 (620)
T ss_pred hhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hh--HHHHHH--hCCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RH--RRKFFR--RQPLS 719 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~--~~~~~~--r~~ls 719 (1152)
++...++.+|++++++..+|...++..+..|+..|++|..++..|+++||||+.++...... .. ...++. ...+.
T Consensus 242 vg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~~A~ 321 (620)
T PRK14948 242 LGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCKLAK 321 (620)
T ss_pred hcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999987643221 10 011111 23456
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCccccc
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEI 799 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1152)
+|+...|.++++.|.++|.++|.+.++++|||.++++|+..+........ .......+...... . ..
T Consensus 322 ~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~~~~~~~~~~-~~~~~~~~~~~~~~--~----------~~ 388 (620)
T PRK14948 322 QINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSAFISEIANA-SAPANPTPAPNPSP--P----------PA 388 (620)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhccCcccccccc-ccccccCCccccCc--c----------cc
Confidence 89999999999999999999999999999999999999975432110000 00000000000000 0 00
Q ss_pred ccccCCCCcccccc-ccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHh
Q 036794 800 SNKETGVPMNVRLE-NFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRI 878 (1152)
Q Consensus 800 ~~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~ 878 (1152)
.. .......... ........ ..+.+.+. . . ..+...... ........+..+|+++|++||+.|
T Consensus 389 ~~--~~~~~~~~~~~~~~~~~~~-----~~~~~~~~--~-~----~~~~~~~~~--~~~~~~~~~~~~l~~~w~~~~~~~ 452 (620)
T PRK14948 389 PI--QPSAPKTKQAATTPSPPPA-----KASPPIPV--P-A----EPTEPSPTP--PANAANAPPSLNLEELWQQILAKL 452 (620)
T ss_pred cC--CCCCCCCCCCCCCCCCCCC-----CCCCCCCC--C-C----CCCCCCCCC--CCCCCCCccccCHHHHHHHHHHhC
Confidence 00 0000000000 00000000 00000000 0 0 000000000 011112234568999999999999
Q ss_pred ccchHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecccccc
Q 036794 879 QNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESKIDTQ 949 (1152)
Q Consensus 879 ~~~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d~~ 949 (1152)
+.+++|+||.++|+|+++.. ..++|.| ++....+++..+..||++|+++||++|+|.+.+.......
T Consensus 453 ~~~~~~~~~~~~~~l~~~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (620)
T PRK14948 453 ELPSTRMLLSQQAELVSLDS---NRAVIAV-SPNWLGMVQSRKPLLEQAFAKVLGRSIKLNLESQSGSASN 519 (620)
T ss_pred CChhHHHHHHhhhheecccC---CEEEEEe-CHHHHHHHHHhHHHHHHHHHHHhCCCeEEEEEecCCCCCC
Confidence 99999999999999999997 4789999 7777788888899999999999999999997775444443
|
|
| >PRK14952 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-56 Score=531.80 Aligned_cols=500 Identities=20% Similarity=0.322 Sum_probs=393.1
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
++|++||||++|++|+||+++++.|++++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|..+.
T Consensus 1 ~al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~ 80 (584)
T PRK14952 1 MALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALA 80 (584)
T ss_pred CcHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhh
Confidence 46899999999999999999999999999999999999999999999999999999999998766678999999999987
Q ss_pred C--CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 489 R--GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 489 ~--g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
. +.+.+++++++.+..++++++++.+.+.+.|+.+.++||||||+|+|+.+++|+||++||+++.+++|||+|+++++
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 5 35688999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQEL 644 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~el 644 (1152)
++++|+|||+.|+|.+++..++.+||..+++++|+.++++++.+|+.+++|++|+++|+|++++.+ ++.||.++|.++
T Consensus 161 ll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~v~~l 240 (584)
T PRK14952 161 VLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQRALGL 240 (584)
T ss_pred hHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877 357999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cch-----hHHHHHHhC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDR-----HRRKFFRRQ 716 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~-----~~~~~~~r~ 716 (1152)
++...++.+|++++++..+|...++..+++|+..|.+|..|+..|..+||+|+.++.... .+. .....+ ..
T Consensus 241 lg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~l-~~ 319 (584)
T PRK14952 241 LGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLERM-RE 319 (584)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHHH-HH
Confidence 999999999999999999999999999999999999999999999999999999876321 111 011112 22
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcc
Q 036794 717 PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGER 796 (1152)
Q Consensus 717 ~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~ 796 (1152)
.+.+|+.+.|.++++.+.+...+++++.+++++||+++++||.+.. +... ..+ ...+..+++.....
T Consensus 320 qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~~~~------~~~~----~~~---~~~~~~le~~~~~~ 386 (584)
T PRK14952 320 QAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLLPSA------SDAE----SAL---LQRVERIETRLDMS 386 (584)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhcccc------cccH----HHH---HHHHHHHHHHHhhc
Confidence 3568999999999999999999999999999999999999996321 1000 000 00011111100000
Q ss_pred cccccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHH
Q 036794 797 AEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLN 876 (1152)
Q Consensus 797 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~ 876 (1152)
.+... .+. ..... ..+........ . .+.+.. .............+...+.+.|.+|++
T Consensus 387 --~~~~~--~~~---------~~~~~----~~~~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~W~~~l~ 444 (584)
T PRK14952 387 --IPANL--LHN---------APQAA----PAPSAAAPEPK-H---QPAPEP-RPVLAPTPASGEPNAAAVRSMWSTVRD 444 (584)
T ss_pred --ccccC--CCC---------CCCCC----CCCCCCCCCCC-C---CCCCCC-CCCCCCcccccchhHHHHHHHHHHHHH
Confidence 00000 000 00000 00000000000 0 000000 000001112244567788999999999
Q ss_pred Hhccch--HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHH--HhHHHHHHHHHHHhCCcEEEEEEEeccccc
Q 036794 877 RIQNNG--TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAE--KFKDQILQAFESVLGSPLTIEIRCESKIDT 948 (1152)
Q Consensus 877 ~~~~~~--l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e--~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d~ 948 (1152)
.++..+ +.. +.++++++.++. .+++|.|.+..++.+.+ ..+..|+++|.+++|.+++|++........
T Consensus 445 ~~~~~~~~~~a-~l~~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~~~~~i~~~l~~~~g~~~~v~~~~~~~~~~ 516 (584)
T PRK14952 445 KVRQRSRTTEV-MLAGATVRALEG---NTLVLTHESAPLARRLSEQRNADVLAEALKDALGVNWRVRCETGKPAAA 516 (584)
T ss_pred HHhhcchhHHH-HHhcCEeeeccC---CEEEEEeCcHHHHHHHhCchhHHHHHHHHHHHhCCCeEEEEEeCCCCcc
Confidence 998543 333 447899999886 47999999988876533 247899999999999999998666543333
|
|
| >PRK14965 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-55 Score=526.57 Aligned_cols=512 Identities=23% Similarity=0.363 Sum_probs=395.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|+.|++||||++|++|+||+++++.|.+++..++++|+||||||+|+|||++|++||++++|.......||+.|..|..
T Consensus 2 sy~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~ 81 (576)
T PRK14965 2 SYLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVE 81 (576)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999987666789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..|.+.+++++++.++.++++++++++.+.+.|+.++++||||||+|+|+..++|+|+++||+|+.+++|||+|+++++
T Consensus 82 i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~k 161 (576)
T PRK14965 82 ITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHK 161 (576)
T ss_pred HhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhh
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++++|++||+.|+|.+++..++..+|..+++++|+.++++++.+|+..++||+|+++++|+++..+ ++.||.++|.+++
T Consensus 162 l~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV~~ll 241 (576)
T PRK14965 162 VPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDVAELL 241 (576)
T ss_pred hhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 5679999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc----hhH--HHHHHhCCCC
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD----RHR--RKFFRRQPLS 719 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g----~~~--~~~~~r~~ls 719 (1152)
+.+..+.+|++++++..+|...++..+.+|+..|.++..++..|..+||+|+.++...... ... ...+ ...+.
T Consensus 242 G~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~-~~~A~ 320 (576)
T PRK14965 242 GVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAEL-RAQAA 320 (576)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHH-HHHHH
Confidence 9999999999999999999999999999999999999999999999999999987542211 111 1112 23456
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcc-cc
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGER-AE 798 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~-~~ 798 (1152)
.|+.+.|.++++.|.+++.+||++.+++++||+++++||... |..+... .. ..+..+++..... ..
T Consensus 321 ~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~~----~~~~~~~-~~--------~~~~~l~~~~~~~~~~ 387 (576)
T PRK14965 321 AADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLA----PGAPVSE-LL--------DRLEALERGAPAPPSA 387 (576)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhcc----CCCCHHH-HH--------HHHHHHHHhhcccccc
Confidence 899999999999999999999999999999999999999631 1111000 00 0000000000000 00
Q ss_pred ccc-ccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHH
Q 036794 799 ISN-KETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNR 877 (1152)
Q Consensus 799 ~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~ 877 (1152)
... .....+. .-+...+..... ..... +.... . ...+.+. ....+. .......+...+.+.|.++++.
T Consensus 388 ~~~~~~~~~~~--~~~~~~~~~~~~----~~~~~-~~~~~-~-~~~~~~~-~~~~~~-~~~~~~~~~~~~~~~W~~~~~~ 456 (576)
T PRK14965 388 AWGAPTPAAPA--APPPAAAPPVPP----AAPAR-PAAAR-P-APAPAPP-AAAAPP-ARSADPAAAASAGDRWRAFVAF 456 (576)
T ss_pred ccccCCCcccc--ccccccCCCCCC----CCCCc-ccccc-c-ccCCccc-ccCCcc-cccccccchhhhhhhHHHHHHH
Confidence 000 0000000 000000000000 00000 00000 0 0000000 000000 0000011345667789999999
Q ss_pred hc-c-chHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhh---hHHHhHHHHHHHHHHHhCCcEEEEEEEecccc
Q 036794 878 IQ-N-NGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKS---KAEKFKDQILQAFESVLGSPLTIEIRCESKID 947 (1152)
Q Consensus 878 ~~-~-~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~---~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d 947 (1152)
++ . ..+++ |..+++|+.++. ..++|.|.+..++. ..++++..|++++.+++|.+++|.+...+...
T Consensus 457 ~~~~~~~~~~-~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 527 (576)
T PRK14965 457 VKGKKPALGA-SLEQGSPLGVSA---GLLEIGFPEGSFELSAMQDPDSRAELKALAEQFFGRPTRLRITVLAAPP 527 (576)
T ss_pred HHhccHHHHH-HHhcCceeeecC---CeEEEEeCchHHHHHHhcChHHHHHHHHHHHHHhCCCeEEEEEECCccc
Confidence 95 2 33444 447899999986 46999999874433 24567789999999999999999988876653
|
|
| >PRK14958 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-54 Score=509.00 Aligned_cols=453 Identities=24% Similarity=0.387 Sum_probs=387.1
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.|++||||++|+|||||+++++.|.+++..++++|+|||+||+|||||++|++||+.++|.......|||.|..|.
T Consensus 1 m~y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 1 MAHQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred CCchhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999998777778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..|.++|++++++.++.++++++++++.+.+.|..++++||||||+|+|+..++|+|+++||+||.+++|||+|+++.
T Consensus 81 ~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlattd~~ 160 (509)
T PRK14958 81 EIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHH 160 (509)
T ss_pred HHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEECChH
Confidence 99999999999999998999999999999999999989999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
+++++|+|||+.|.|.+++..++..++..+++++|+.++++++..|+..++|++|+++++|++++.++ +.||.++|.++
T Consensus 161 kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V~~~ 240 (509)
T PRK14958 161 KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKTM 240 (509)
T ss_pred hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987774 67999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc--chhHHHHHHhCCCCccc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK--DRHRRKFFRRQPLSKEE 722 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~--g~~~~~~~~r~~ls~~s 722 (1152)
++...++.+|++++++..+|...++..+++|+..|+++..++..|+.++++++.++..... ......+. ..+..++
T Consensus 241 lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 318 (509)
T PRK14958 241 LGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALIENDSEQLR--QLAKLLD 318 (509)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccccchHHHHH--HHHHhCC
Confidence 9999999999999999999999999999999999999999999999999999886543211 11111111 1234688
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcccccccc
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNK 802 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1152)
.+.|..+++++.....+||.+.+++++||++|++++.- .|... .. .+ .. .+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~----~~~~~--~~---~~------------~~------~~-- 369 (509)
T PRK14958 319 REDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAF----YPSAA--NA---IP------------ET------ES-- 369 (509)
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhc----CCCcc--cc---cC------------CC------CC--
Confidence 88898899999999999999999999999999999942 22100 00 00 00 00
Q ss_pred cCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccch
Q 036794 803 ETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNG 882 (1152)
Q Consensus 803 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~~ 882 (1152)
.... . .+.+ . . -.+.|.++++.+....
T Consensus 370 --------------~~~~-~--------------------~~~~----~--------~------~~~~W~~lv~~L~l~G 396 (509)
T PRK14958 370 --------------KEAV-V--------------------TPTP----K--------S------SETSWPQLLSQLKLTG 396 (509)
T ss_pred --------------CccC-C--------------------CCCC----C--------C------ccchHHHHHHHcCCch
Confidence 0000 0 0000 0 0 0125999999999777
Q ss_pred HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecc
Q 036794 883 TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESK 945 (1152)
Q Consensus 883 l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~ 945 (1152)
+-..|.+++.++.... ..+.+.+.....-...++.+..|+.+|++.||.+|+|.|.+...
T Consensus 397 l~~qLA~n~~l~~~~~---~~i~L~L~~~~~~L~~~~~~~~L~~ALs~~~G~~i~L~I~~g~~ 456 (509)
T PRK14958 397 ATLALAQQCSLKELTD---NRLYLMLNPKQKPLLQQKHIERISEALSEHFNRTITVKIDISNH 456 (509)
T ss_pred HHHHHHhhhhhhcccC---CEEEEEEChhhhhhcCHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 7777888888888865 45888888654333456678899999999999999999886643
|
|
| >COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=505.95 Aligned_cols=355 Identities=31% Similarity=0.530 Sum_probs=331.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.+++||||++|+|++||++++.+|.+++..++++|+|||+||+|||||++||+||+.+||......+||+.|..|.
T Consensus 1 m~yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 1 MSYQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred CchHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 35889999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..|.+.|++|+|++++++++++|++.+.+.+.|..++|+|+||||+|||+..++|+|||+|||||.+|+|||+|++++
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~ 160 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQ 160 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
++|.+|+|||++|+|.+++.++|...|..++.++++.++++|+..|++.++|++|+++++||++..++ +.||.+.|.++
T Consensus 161 Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v~~~ 240 (515)
T COG2812 161 KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESVRDM 240 (515)
T ss_pred cCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999997775 57999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh----cchhHHHHHHhCCCCc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT----KDRHRRKFFRRQPLSK 720 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~----~g~~~~~~~~r~~ls~ 720 (1152)
+|.+..+.+.+++++++.+|...++..++++++.|.+|..++.+|+.+++++|..+...- .........-+..+..
T Consensus 241 lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~ 320 (515)
T COG2812 241 LGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKELASQ 320 (515)
T ss_pred hCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999777554321 1111111111123457
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
++...|.++++.+......+|.+.++++++|+++++++..
T Consensus 321 ~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~ 360 (515)
T COG2812 321 ISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEA 360 (515)
T ss_pred cCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhh
Confidence 8999999999999999999999999999999999999964
|
|
| >PRK14950 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-51 Score=497.81 Aligned_cols=520 Identities=24% Similarity=0.390 Sum_probs=394.9
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC-CCCCCCCCCCccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-EQPKPCGFCNSCI 485 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~-e~~epcg~c~~c~ 485 (1152)
.++.|++||||++|++||||++++..|.+++..++++|+||||||+|+|||++|++||+.++|... ....||+.|..|.
T Consensus 2 ~~~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 2 TVQVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred ccHHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 478899999999999999999999999999999999999999999999999999999999999764 3457999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....++++++++++.+...|+++.++||||||+|+|+.++++.|+++||+++.+++||+++++.+
T Consensus 82 ~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~ 161 (585)
T PRK14950 82 AIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVH 161 (585)
T ss_pred HHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChh
Confidence 99999999999998877788999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.++|++||+++.|.+++..++..++.+++.++|+.++++++.+|+.+++||+|.++++|++++.+ ++.||.++|.++
T Consensus 162 kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~~l 241 (585)
T PRK14950 162 KVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQSL 241 (585)
T ss_pred hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc---hh--HHHHHHhCCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD---RH--RRKFFRRQPLS 719 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g---~~--~~~~~~r~~ls 719 (1152)
++...++++|++++++..+|..+++++++.|+..|+++..|+..|.++||+|+.++...... .. ...++ .++++
T Consensus 242 l~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~-~~qa~ 320 (585)
T PRK14950 242 LGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAAL-QKVSQ 320 (585)
T ss_pred hcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHH-HHHHh
Confidence 99999999999999999999999999999999999999999999999999999987543221 10 11122 33567
Q ss_pred cccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccc-cCCCCCCC--C-CCCCCccccccCCC--CccccC
Q 036794 720 KEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYV-LPSSSADT--S-FSHSPLDLENAGGR--GMTRKG 793 (1152)
Q Consensus 720 ~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~-~~~ss~~~--s-~~~~~~~~~~~~~~--~~~~~~ 793 (1152)
+|+.+.|.++++.|.++|+++|++.+++++||++|+++|-..... .+..++.+ . ....+. +..+ .+....
T Consensus 321 ~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 396 (585)
T PRK14950 321 IANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLVPVPAPQPAKPTAAAPSPVRPTPA----PSTRPKAAAAAN 396 (585)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcCCcccccccccccCCcCccCCCCC----CCCccccccccc
Confidence 999999999999999999999998888999999999999543211 11111100 0 000000 0000 000000
Q ss_pred CcccccccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCC-CCC--CCCCCCCCChhhHHHH
Q 036794 794 GERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSP-LSA--GGRHVSGNSRNGIEEI 870 (1152)
Q Consensus 794 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~l~~i 870 (1152)
..+..... ....+. +.-....++.... ..+......+..+..........+. ... ..........+.|+..
T Consensus 397 ~~~~~~~~-~~~~~~-~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 470 (585)
T PRK14950 397 IPPKEPVR-ETATPP-PVPPRPVAPPVPH----TPESAPKLTRAAIPVDEKPKYTPPAPPKEEEKALIADGDVLEQLEAI 470 (585)
T ss_pred CCcccccc-cCCCCC-CCCCCCCCCCCCC----CCCCCCCcccccccCCcCCCCCCCCCCcccccCCCCcchhHHHHHHH
Confidence 00000000 000000 0000000000000 0000000000000000000000000 000 0011123456789999
Q ss_pred HHHHHHHhccchH--HHHHHhcCeEeEEecCCCCeEEEEeCCchhhhh--HHHhHHHHHHHHHHHhCCcEEEEE
Q 036794 871 WLEVLNRIQNNGT--KEFLYREGKLISVSFGAAPTVQLTFRSHLTKSK--AEKFKDQILQAFESVLGSPLTIEI 940 (1152)
Q Consensus 871 W~~vl~~~~~~~l--~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~--~e~~~~~Ie~~~~~vlg~~v~v~i 940 (1152)
|.+|++.++..+. ..+|...++++.+.. .++.|.|.+..++.+ .++.+..|++++.+++|.++.|++
T Consensus 471 w~~~~~~~~~~~~~~~~~~~~~a~p~~~~~---~~l~l~~~~~~~~~~~~~~~~r~~i~~~l~~~~g~~~~v~c 541 (585)
T PRK14950 471 WKQILRDVPPRSPAVQALLSSGVRPVSVEK---NTLTLSFKSKFHKDKIEEPENRKITEELLSNFVGKTCAVRC 541 (585)
T ss_pred HHHHHHHHhhcCHHHHHHHhCCCeeeeecC---CEEEEecCcHHHHHHhhchHHHHHHHHHHHHHhCCceEEEE
Confidence 9999999986654 444444479988875 589999999999886 556899999999999999988885
|
|
| >PRK14954 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=492.00 Aligned_cols=355 Identities=30% Similarity=0.498 Sum_probs=327.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--------CCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--------QPKP 477 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--------~~ep 477 (1152)
+.|+.+++||||++|++|+||+.++..|++++..++++|+|||+||+|+|||++|++||+.++|.... ...|
T Consensus 1 m~~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 1 MSYQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred CCcHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 35788999999999999999999999999999999999999999999999999999999999996432 2379
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
|+.|..|..+..|.+.++.++++....++++|+++++.+...|++++++||||||+|.|+..++++|+++||+|+.+++|
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~ 160 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIF 160 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 99999999999999999999998777889999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC----
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---- 633 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg---- 633 (1152)
|++|++++++.++|.+||+.|.|.+++..++..||..++.++|+.|+++++++|+..++||+|.++++|++++.+.
T Consensus 161 IL~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~ 240 (620)
T PRK14954 161 IFATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSE 240 (620)
T ss_pred EEEeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998774
Q ss_pred --CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH-
Q 036794 634 --QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR- 710 (1152)
Q Consensus 634 --~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~- 710 (1152)
+.||.++|.++++...++++|++++++..+|..+|+.+++.|+..|++|..|+..|+++||+||.++.....+....
T Consensus 241 ~~~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~ 320 (620)
T PRK14954 241 AEKVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERP 320 (620)
T ss_pred cCCccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCC
Confidence 46999999999999999999999999999999999999999999999999999999999999999876544332211
Q ss_pred HHHH---hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 711 KFFR---RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 711 ~~~~---r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
.++. .+++.+|+.+.|.++++.|.++|.+||+..++++.||++++++|..
T Consensus 321 ~~v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~ 373 (620)
T PRK14954 321 ESVKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIEL 373 (620)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhc
Confidence 1211 2345689999999999999999999999999999999999999963
|
|
| >PRK14971 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=492.15 Aligned_cols=533 Identities=24% Similarity=0.375 Sum_probs=400.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSCI 485 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c~ 485 (1152)
.|..|.+||||.+|++|+||++++..|.+++..++++|+||||||+|+|||++|+++|+.++|.... ...+|+.|.+|.
T Consensus 3 ~~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~ 82 (614)
T PRK14971 3 NYIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCV 82 (614)
T ss_pred hhHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHH
Confidence 4778999999999999999999999999999999999999999999999999999999999997643 347999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++.+..++++++++++.+...|++++++||||||+|.|+..++++|+++||+|+.+++|||+|++..
T Consensus 83 ~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~ 162 (614)
T PRK14971 83 AFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKH 162 (614)
T ss_pred HHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCch
Confidence 99999999999999987888999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.++|++||+.+.|.+++.+++..||..++.++|+.++++++++|+..++||+|.++++|++++.+ ++.|+.++|.++
T Consensus 163 kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V~~~ 242 (614)
T PRK14971 163 KILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSVIEN 242 (614)
T ss_pred hchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 556999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch------hHHHHHHhCCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR------HRRKFFRRQPL 718 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~------~~~~~~~r~~l 718 (1152)
+.....+++|++++++..++...|+..++.|+..|++|..|+..|+++||+||.++....... ....| ..++
T Consensus 243 l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~--~~qa 320 (614)
T PRK14971 243 LNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRY--LEQA 320 (614)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHH--HHHH
Confidence 999999999999999999999999999999999999999999999999999999876543211 11122 2246
Q ss_pred CcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCcc-cc----------ccCCC
Q 036794 719 SKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLD-LE----------NAGGR 787 (1152)
Q Consensus 719 s~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~-~~----------~~~~~ 787 (1152)
.+|+.+.|+++++.|.++|..||++.+++++||.++++||...+ +.. ..+...+|.. ++ .+...
T Consensus 321 ~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~~~---~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (614)
T PRK14971 321 QKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQLTQ---KGD--DASGGRGPKQHIKPVFTQPAAAPQPSAA 395 (614)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhccCC---Ccc--ccCCCCCcccccchhhhccCCCCCcccc
Confidence 78999999999999999999999999999999999999996322 111 1111111100 00 00000
Q ss_pred CccccCCccccccc-c-cCCCCccccccccccCCCCccccCCcc-----ccccc----cccccC-----CCC--------
Q 036794 788 GMTRKGGERAEISN-K-ETGVPMNVRLENFHAENSGDFIDGNMR-----KGISL----DRKRHT-----GSG-------- 843 (1152)
Q Consensus 788 ~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~~-----~~~-------- 843 (1152)
.............. . .....++...................+ ....+ ...... .-+
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (614)
T PRK14971 396 AAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAAVPVNPPSTAPQAVRPAQFKEEKKIPVSKVSSLGPSTLRPIQ 475 (614)
T ss_pred ccccccccccccccCCCCCcccccccCCCCCCCCCCccccCCCCCcCCccCCCcccccccCCCccccccccccccccchh
Confidence 00000000000000 0 000000000000000000000000000 00000 000000 000
Q ss_pred cccc--CCCCCCC-CCCCCCCCChhhHHHHHHHHHHHhccchHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHh
Q 036794 844 MALQ--QKSPLSA-GGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKF 920 (1152)
Q Consensus 844 ~~~~--~~~~~~~-~~~~~~~~~~~~l~~iW~~vl~~~~~~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~ 920 (1152)
.... ....... .......++.++|...|.+++++++... +.++. ..+........+++++|.+.+.+.+...++.
T Consensus 476 ~~~~~~~~~~~~~~~~~~~~~Ft~e~l~~~W~~~~~~~~~~~-~~~~~-~m~~~~p~~~~~~~i~v~v~N~~~~~~l~~~ 553 (614)
T PRK14971 476 EKAEQATGNIKEAPTGTQKEIFTEEDLQYYWQEFAGTRPQEE-KALKE-TMINCRPKLLNGTTFEVAVDNELQEKELTNL 553 (614)
T ss_pred hhhhhhhccccccCCCcccCCCCHHHHHHHHHHHHHHHHHHH-HHHHH-HHHhCCCcccCCceEEEEeCCHHHHHHHHHH
Confidence 0000 0000000 1111146899999999999999997664 22222 2344444444447899999999988888888
Q ss_pred HHHHHHHHHHHhC-CcEEEEEEEeccccc
Q 036794 921 KDQILQAFESVLG-SPLTIEIRCESKIDT 948 (1152)
Q Consensus 921 ~~~Ie~~~~~vlg-~~v~v~i~~~~~~d~ 948 (1152)
+..|.+.|..-|+ ..|+|.|++....+.
T Consensus 554 ~~~ll~~lr~~L~N~~i~l~i~v~e~~e~ 582 (614)
T PRK14971 554 IPDLLGFLRGRLKNSKITMTVRVSEPTEV 582 (614)
T ss_pred HHHHHHHHHHhcCCCceEEEEEecccccc
Confidence 8999999998888 999999998865544
|
|
| >PRK07764 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-50 Score=497.45 Aligned_cols=350 Identities=24% Similarity=0.415 Sum_probs=322.7
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
..|++||||++|++||||+.++..|++++..++++|+|||+||+|+|||++|++||+.|+|.......||+.|.+|..+.
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 46889999999999999999999999999999999999999999999999999999999998665567999999999998
Q ss_pred CC--CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 489 RG--KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 489 ~g--~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.+ .+.+++++++....++++|+++.+.+.+.+..++++||||||+|+|+..++|+||++||+++.+++|||+|+++++
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 88 7788999998888899999999999988899899999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQEL 644 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~el 644 (1152)
|+++|+|||+.|.|.+++.+++.+||.++++++|+.++++++.+|+..++||+|+++++|++++.+ .+.||.++|.++
T Consensus 163 Ll~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e~V~al 242 (824)
T PRK07764 163 VIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYERAVAL 242 (824)
T ss_pred hhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999866 356999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc------ch--hHHHHHHhC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK------DR--HRRKFFRRQ 716 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~------g~--~~~~~~~r~ 716 (1152)
++......+|++++++..+|...++.++++|+..|+++..|+..|.++||+|+.++..... +. .....+ ..
T Consensus 243 lg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~~L-~~ 321 (824)
T PRK07764 243 LGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLDRM-RA 321 (824)
T ss_pred hcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHHHH-HH
Confidence 9999999999999999999999999999999999999999999999999999987653321 11 111111 23
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 717 PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 717 ~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
++.+|+...|.++++.|.++...+|...++++.||+++++|+.
T Consensus 322 qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 322 QAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 4569999999999999999999999999999999999999985
|
|
| >PRK14951 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-50 Score=481.80 Aligned_cols=353 Identities=24% Similarity=0.437 Sum_probs=324.7
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-----CCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-----QPKPCGF 480 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-----~~epcg~ 480 (1152)
+.|+.|++||||++|++||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.... ...|||.
T Consensus 1 msy~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 1 MSYLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred CchHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 35889999999999999999999999999999999999999999999999999999999999996432 2379999
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
|..|..+..|.+.+++++++..+.++++++++++.+.+.|..++++||||||+|+|+..++|+|+++||+++.+++|||+
T Consensus 81 C~~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~ 160 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLA 160 (618)
T ss_pred cHHHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEE
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHH
Q 036794 561 SSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVP 639 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~E 639 (1152)
|+++.+++++|++||..|.|.+++.+++..+|..++.++|+.++++++.+|+..++|++|++++++++++.++ +.||.+
T Consensus 161 Ttd~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~ 240 (618)
T PRK14951 161 TTDPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEA 240 (618)
T ss_pred ECCchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999987664 569999
Q ss_pred HHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc----hhHHHHHHh
Q 036794 640 LVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD----RHRRKFFRR 715 (1152)
Q Consensus 640 dV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g----~~~~~~~~r 715 (1152)
+|.++++...++.+|++++++..+|...++..+++|+..|+++..|+..|...+++|+..+..-... ......+.
T Consensus 241 ~V~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 319 (618)
T PRK14951 241 AVRQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVA- 319 (618)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999876432210 11111111
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.....++.+.|..+++++......++.+.++++.||++|++|+.
T Consensus 320 ~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~ 363 (618)
T PRK14951 320 RLAALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLA 363 (618)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 12347899999999999999999999999999999999999984
|
|
| >PRK09111 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=475.59 Aligned_cols=356 Identities=25% Similarity=0.454 Sum_probs=328.0
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC-----CCCC
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP-----KPCG 479 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~-----epcg 479 (1152)
...|+.|.+||||++|++|+||+.+++.|.+++..++++|+|||+||+|+|||++|++||+.++|...... .||+
T Consensus 8 ~~~y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg 87 (598)
T PRK09111 8 ATPYRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCG 87 (598)
T ss_pred CccchhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCc
Confidence 34589999999999999999999999999999999999999999999999999999999999999864332 6999
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
.|..|..+..+.+.|++++++.+..++++|+++++.+.+.|++++++||||||+|+|+..++++|+++||+|+.+++|||
T Consensus 88 ~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl 167 (598)
T PRK09111 88 VGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIF 167 (598)
T ss_pred ccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEE
Confidence 99999999999999999999988899999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCH
Q 036794 560 VSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISV 638 (1152)
Q Consensus 560 aTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~ 638 (1152)
+|+++++++++|++||+.|+|.+++..++..||..+++++|+.++++++++|+..++|++|.+.++|++++.++ +.||.
T Consensus 168 ~tte~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~ 247 (598)
T PRK09111 168 ATTEIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTA 247 (598)
T ss_pred EeCChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987664 57999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh--cchhHHHHHH--
Q 036794 639 PLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT--KDRHRRKFFR-- 714 (1152)
Q Consensus 639 EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~--~g~~~~~~~~-- 714 (1152)
++|.++++...+..+|++++++..+|...|+..++.|+..|.+|..|+..|++++++|+.++.... .......+..
T Consensus 248 e~V~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~~k 327 (598)
T PRK09111 248 EAVRDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTR 327 (598)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999876421 1111111111
Q ss_pred -hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 715 -RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 715 -r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
...+.+++...|.++++.|.+++..+|++.++++++|++|++||..
T Consensus 328 l~~~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~ 374 (598)
T PRK09111 328 GAEFAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYA 374 (598)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhh
Confidence 2245589999999999999999999999999999999999999963
|
|
| >PRK14963 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-49 Score=465.99 Aligned_cols=490 Identities=25% Similarity=0.389 Sum_probs=378.8
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
++++||||++|+||+||++++..|.+++..++++|+||||||||||||++|++||+.++|... ...+|+.|..|..+..
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~-~~~~cg~C~sc~~i~~ 81 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE-DPKPCGECESCLAVRR 81 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCC-CCCCCCcChhhHHHhc
Confidence 578999999999999999999999999999999999999999999999999999999999754 3579999999999999
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchH
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~ 569 (1152)
+.+.++.++++....+++.++++.+.+...|+.+.++||||||+|.++..++++|+++|++++.+++||++|+.+.++++
T Consensus 82 ~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 82 GAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCCh
Confidence 99999999998878899999999999988899999999999999999999999999999999999999999999999999
Q ss_pred HHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccc
Q 036794 570 IIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLIS 649 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ 649 (1152)
++.+||+.|.|.+++.+++..||..+++++|+.++++++++|+..++||+|.++|+|++++.+++.||.++|.++++...
T Consensus 162 ~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~ 241 (504)
T PRK14963 162 TILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLALGTPVTRKQVEEALGLPP 241 (504)
T ss_pred HHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999988877899999999999999
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHHH
Q 036794 650 DEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQA 729 (1152)
Q Consensus 650 ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~qa 729 (1152)
++++|++++++..+|...|+..+++|+..|++|..|+..|.++++.++.++.....+. ...+..+.+.++
T Consensus 242 ~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~----------~~~~~~~~~~~~ 311 (504)
T PRK14963 242 QERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGP----------RLEGAEPRLLAA 311 (504)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCccc----------ccccCcHHHHHH
Confidence 9999999999999999999999999999999999999999999999999875543221 112455779999
Q ss_pred HHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcccccccccCCCCcc
Q 036794 730 LKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVPMN 809 (1152)
Q Consensus 730 L~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 809 (1152)
++.|.+.++++..+.+ +..||++|+++|.+.. ..+++.... ..+... ....+.++.. .+++
T Consensus 312 l~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~~~-~~~~~~~~~---~~~~~~---~~~~~~~r~~---~le~-------- 372 (504)
T PRK14963 312 MTALDEQMERFARRSD-ALSLELALLHALLALG-GAPSEGVAA---VAPPAP---APADLTQRLN---RLEK-------- 372 (504)
T ss_pred HHHHHHHHHHHHhccc-hhHHHHHHHHHHhhhc-cCCcccccc---ccccCC---CHHHHHHHHH---HHHH--------
Confidence 9999999999877665 6779999999996431 111111000 001000 0111111111 1111
Q ss_pred ccccccccCCCCc---cccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccchHHHH
Q 036794 810 VRLENFHAENSGD---FIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNNGTKEF 886 (1152)
Q Consensus 810 ~~l~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~~l~~~ 886 (1152)
-...+... .................. .+.+............+...+...+.+-|.+|+..++ ..++++
T Consensus 373 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~-~~~~~~ 444 (504)
T PRK14963 373 -----EVRSLRSAPTAAATAAGAPLPDFDPRPRG--PPAPEPARSAEAPPLVAPAAAPAGLALRWRDVLAALK-MQLRAF 444 (504)
T ss_pred -----HhccCCCCccccCCCCCCCccccCcccCC--CCCccccccccCCCccCChhHHHHHHHHHHHHHHHhh-HHHHHH
Confidence 11110000 000000000000000000 0000000000001111233455677888999999995 446888
Q ss_pred HHhcCeEeEEecCCCCeEEEEeCCch--hhhhHHHhHHHHHHHHHHHhCCcEEEEEEEe
Q 036794 887 LYREGKLISVSFGAAPTVQLTFRSHL--TKSKAEKFKDQILQAFESVLGSPLTIEIRCE 943 (1152)
Q Consensus 887 l~~~gkl~s~~~~~~~~v~l~F~~~~--~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~ 943 (1152)
|.. +.+ ++.. ..++|.|.... +....++.+..|++.+++++| +|+|+++..
T Consensus 445 ~~~-~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 497 (504)
T PRK14963 445 LRE-ARP-HVEE---GYVSLTFPERASFHYKQAQKKLAELAALVREVFG-PETVELILP 497 (504)
T ss_pred HHh-hcc-cCCC---CeEEEEecCccchhhhhhHHHHHHHHHHHHHHhC-CeEEEEEec
Confidence 865 444 3332 26999999864 444566788999999999999 888887754
|
|
| >PRK14964 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-50 Score=470.50 Aligned_cols=347 Identities=29% Similarity=0.460 Sum_probs=321.8
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|.+||||++|+|||||+.+++.|.+++..++++|+|||+||+|+|||++|++||+.++|...+...||+.|..|..+..
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 47889999999999999999999999999999999999999999999999999999999998888899999999999999
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchH
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~ 569 (1152)
+.+.++++++++++.++++++++++.+.+.|++++++||||||+|+|+.+++|+|+++||+|+.+++|||+|++++++++
T Consensus 82 ~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~~Kl~~ 161 (491)
T PRK14964 82 SNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEVKKIPV 161 (491)
T ss_pred cCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCChHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhcc
Q 036794 570 IIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLI 648 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~v 648 (1152)
+|++||+.++|.+++..++..+|..+++++|+.++++++++|++.++|++|+++++|++++.+ ++.||.++|.++++..
T Consensus 162 tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~llg~~ 241 (491)
T PRK14964 162 TIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRDLLGCV 241 (491)
T ss_pred HHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHccC
Confidence 999999999999999999999999999999999999999999999999999999999999877 4579999999999999
Q ss_pred chhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc--chh--HHHHHHhCCCCcccHH
Q 036794 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK--DRH--RRKFFRRQPLSKEEME 724 (1152)
Q Consensus 649 ~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~--g~~--~~~~~~r~~ls~~s~~ 724 (1152)
....+|+++++++.+|..+|+..+++|+..| +|..|+..|..++++++..+..... ... .....+.. .. ++..
T Consensus 242 ~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~ 318 (491)
T PRK14964 242 DKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSL-KI-GSTI 318 (491)
T ss_pred CHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHH-hC-CCHH
Confidence 9999999999999999999999999999876 7999999999999998876532211 111 11122222 23 8999
Q ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 725 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 725 kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.|.++++.|.+...++|.+.+|++.+|+++++||.
T Consensus 319 ~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~ 353 (491)
T PRK14964 319 FLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCY 353 (491)
T ss_pred HHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999995
|
|
| >PRK14969 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-49 Score=468.60 Aligned_cols=473 Identities=24% Similarity=0.401 Sum_probs=384.6
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.|.+||||++|++|+||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|.
T Consensus 1 m~~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 1 MSYQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred CCcHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998766668999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++..+.++++++++++.+...|+.++++||||||+|+|+.+++|+|+++||+++.+++||++|+++.
T Consensus 81 ~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~ 160 (527)
T PRK14969 81 EIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQ 160 (527)
T ss_pred HHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChh
Confidence 99999999999999888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.+.|.+++..++..+|..+++++|+.++++++.+|+..++|++|++++++++++.+ .+.|+.++|.++
T Consensus 161 kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v~~~ 240 (527)
T PRK14969 161 KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEVRAM 240 (527)
T ss_pred hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc---chhHHHHHHhCCCCcc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK---DRHRRKFFRRQPLSKE 721 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~---g~~~~~~~~r~~ls~~ 721 (1152)
++...++.+|++++++..+|...++..+++|+..|+++..++..|+.+||+++..+..-.. .......+. ..+.++
T Consensus 241 ~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~-~~a~~~ 319 (527)
T PRK14969 241 LGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLL-DLAKRL 319 (527)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHH-HHHHcC
Confidence 9999999999999999999999999999999999999999999999999999998752211 111112222 234589
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCccccccc
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISN 801 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1152)
+.+.|..+++.+.++...|+.+.++++.||++|++++.-. |.....+ ....+ . . .+.
T Consensus 320 s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~----~~~~~~~-~~~~~------------~--~----~~~ 376 (527)
T PRK14969 320 SPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFR----PSEQDSG-AGRAP------------G--A----VPG 376 (527)
T ss_pred CHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccC----CCCCCcC-CCCCC------------C--C----CCC
Confidence 9999999999999999999999999999999999998421 1110000 00000 0 0 000
Q ss_pred ccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccc
Q 036794 802 KETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNN 881 (1152)
Q Consensus 802 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~ 881 (1152)
.. .+. . .. . . .. ..+ ..+.+ .. . ....+-|.++++++.-.
T Consensus 377 ~~--~~~--~-----~~-~-~----~~---~~~-------~~~~~----~~---~--------~~~~~~W~~lv~~L~l~ 416 (527)
T PRK14969 377 VN--RTR--A-----VP-T-A----AP---AAP-------AAATP----SD---R--------QSFNGNWRALVDQLKLS 416 (527)
T ss_pred CC--CCC--C-----CC-C-C----CC---CCc-------cCCCC----CC---C--------CcccccHHHHHHHcCCc
Confidence 00 000 0 00 0 0 00 000 00000 00 0 00112599999999866
Q ss_pred hHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecc
Q 036794 882 GTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESK 945 (1152)
Q Consensus 882 ~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~ 945 (1152)
.+-..|..|+.++.... ..+.+.......-...++.+..++.+|.+.||.+++|.|.+...
T Consensus 417 g~~~qLA~n~~l~~~~~---~~v~L~l~~~~~~L~~~~~~~~L~~ALs~~~G~~~~l~I~~g~~ 477 (527)
T PRK14969 417 GLARELAQNCELKSFSE---DRIELRVPEAHKHLLDKPYQDKLQAALEQHFGRPVQLIFSLGGV 477 (527)
T ss_pred hHHHHHHHhhhhhcccC---CEEEEEeChhhhhhcCHHHHHHHHHHHHHHhCCCeEEEEEeCCC
Confidence 55555667888888764 45777776443333356668899999999999999999986653
|
|
| >PRK14956 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-50 Score=468.24 Aligned_cols=356 Identities=26% Similarity=0.469 Sum_probs=320.7
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|++|++||||++|+|+|||++++..|.+++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|.
T Consensus 3 ~~~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 3 GTHEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred CCcchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999998877778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.++++++++.+.+++.++++++.+...|..++++||||||+|+|+.+++++||++||+|+.+++||++|++++
T Consensus 83 ~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~ 162 (484)
T PRK14956 83 EITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFH 162 (484)
T ss_pred HHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChh
Confidence 99999999999999988889999999999998888888999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.|.|.+++..++..+|+.++..+|+.++++++.+|++.++|++|+++++||+++.+ ++.||.+.|.++
T Consensus 163 kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V~~~ 242 (484)
T PRK14956 163 KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKIRKM 242 (484)
T ss_pred hccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997644 567999999999
Q ss_pred HhccchhhHHHHHHHHHcCCH-HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhc----chhHHHHHH-hCCC
Q 036794 645 VGLISDEKLVDLLDLALSADT-VNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTK----DRHRRKFFR-RQPL 718 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~-~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~----g~~~~~~~~-r~~l 718 (1152)
++....+.++++++++..+|. ..++.++.+|+..|+||..++..|..++|+|+.++..... +......-. +.++
T Consensus 243 lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (484)
T PRK14956 243 IGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMKSDF 322 (484)
T ss_pred hCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHHHHH
Confidence 999999999999999999875 6899999999999999999999999999999987754211 111111111 2234
Q ss_pred CcccHHHHHHHHHHHH----HH-HHHhccCCCHHHHHHHHHHHcCCCc
Q 036794 719 SKEEMEKLRQALKTLS----EA-EKQLRMSNDKLTWLTAALLQLAPDQ 761 (1152)
Q Consensus 719 s~~s~~kL~qaL~~L~----ea-D~qLK~s~dprl~LE~lLLkLa~~~ 761 (1152)
..++...|.+++..|. .+ +.++|++.+|+++||+++++||.+.
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~~~ 370 (484)
T PRK14956 323 ENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVEEL 370 (484)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhccc
Confidence 5788888888766553 22 4678999999999999999999643
|
|
| >PRK08691 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-48 Score=465.82 Aligned_cols=353 Identities=25% Similarity=0.460 Sum_probs=327.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|+.|++||||++|+|||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|.
T Consensus 1 Msy~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 1 MAYQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred CcchhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998877779999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....+++.++++++.+.+.|+.++++||||||+|+|+..++++|+++||+++.+++|||+|+++.
T Consensus 81 ~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~ 160 (709)
T PRK08691 81 QIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPH 160 (709)
T ss_pred HHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCcc
Confidence 99999999999999888899999999999998889889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
+++.+|++||..|.|.+++.+++..+|..++.++|+.++++++.+|++.++||+|+++++|++++.++ +.|+.++|.++
T Consensus 161 kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V~~l 240 (709)
T PRK08691 161 KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDVRQM 240 (709)
T ss_pred ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999987764 57999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cchhHHHHHHhCCCCcc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDRHRRKFFRRQPLSKE 721 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~~~~~~~~r~~ls~~ 721 (1152)
++...+..+|+|++++..+|...++..+++|+..|.++..++..|..++++|+..+..-. ........+.. .+..+
T Consensus 241 LG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~-~a~~~ 319 (709)
T PRK08691 241 IGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHR-LAQTI 319 (709)
T ss_pred HcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHH-HHHcC
Confidence 999999999999999999999999999999999999999999999999999998764321 11112223322 24578
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.|..+++++.+....|+.+.++++.||++|++|+.
T Consensus 320 ~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~ 357 (709)
T PRK08691 320 SGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLA 357 (709)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999974
|
|
| >PRK06645 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=469.28 Aligned_cols=447 Identities=21% Similarity=0.374 Sum_probs=376.2
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC----CCCCCCC
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE----QPKPCGF 480 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e----~~epcg~ 480 (1152)
.+.|++|++||||++|+|++||++++..|.+++..++++|+|||+||+|||||++|++||+.++|.... ...||+.
T Consensus 5 ~~~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~ 84 (507)
T PRK06645 5 SNQYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQ 84 (507)
T ss_pred cccccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCC
Confidence 466999999999999999999999999999999999999999999999999999999999999997532 2479999
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
|..|..+..+.+.+++++++.+..++++++++++.+.+.|++++++||||||+|+|+..++++|+++||+++.+++||++
T Consensus 85 C~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~a 164 (507)
T PRK06645 85 CTNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFA 164 (507)
T ss_pred ChHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEE
Confidence 99999999999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----CC
Q 036794 561 SSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ----RI 636 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~----~I 636 (1152)
|+++++++++|.+||+.++|.+++..++..+|..+++++|+.++++++++|+..++|++|+++++|++++.+++ .|
T Consensus 165 Tte~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~I 244 (507)
T PRK06645 165 TTEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNII 244 (507)
T ss_pred eCChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999966532 69
Q ss_pred CHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh--cchh--HHHH
Q 036794 637 SVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT--KDRH--RRKF 712 (1152)
Q Consensus 637 T~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~--~g~~--~~~~ 712 (1152)
|.++|.++++...++++|+|++++..+|..+|+..+++|+..|++|..++..|+.+++.|+.++.... .... ....
T Consensus 245 t~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~ 324 (507)
T PRK06645 245 SPQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDR 324 (507)
T ss_pred CHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999998765331 1111 1111
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCcccc
Q 036794 713 FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRK 792 (1152)
Q Consensus 713 ~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~ 792 (1152)
+. ..+..++...|.++++.|.+...++|.+.+|++++|+++++||.... .|+ ....+ +
T Consensus 325 ~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~~~--lp~------~~~~~-------~------ 382 (507)
T PRK06645 325 TK-SILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTS--LPL------LTDFD-------G------ 382 (507)
T ss_pred HH-HHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhcc--CCC------ccccc-------C------
Confidence 11 22347899999999999999999999999999999999999995211 111 00000 0
Q ss_pred CCcccccccccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHH
Q 036794 793 GGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWL 872 (1152)
Q Consensus 793 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~ 872 (1152)
. .++. +.+ +.+. + . .. .-|.
T Consensus 383 -~----------------------~~~~--------~~~------------~~~~--~-~-------~~-------~~~~ 402 (507)
T PRK06645 383 -N----------------------NQNL--------NQS------------INPE--I-K-------KK-------FEIV 402 (507)
T ss_pred -C----------------------CCCC--------CCC------------CCCC--C-C-------cc-------cCHH
Confidence 0 0000 000 0000 0 0 00 1288
Q ss_pred HHHHHhccch---HHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEE
Q 036794 873 EVLNRIQNNG---TKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIR 941 (1152)
Q Consensus 873 ~vl~~~~~~~---l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~ 941 (1152)
++++.+..+. |+..|...-+|+.+.+| .+++.+... ..++...+.+.|+...|..-.|.+.
T Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~-----~~~~~~~l~~~l~~~t~~~w~~~~~ 466 (507)
T PRK06645 403 DFLEYLYKNNEIDIYYFLLNHTELKNLSDN---RLEFVSLEV-----TSKIKKQIEDLLAAFTNEKFEIIII 466 (507)
T ss_pred HHHHHHHhcccHHHHHHHHhcceeeeecCC---eEEEEeCCC-----cHHHHHHHHHHHHHHhCCCeEEEec
Confidence 8888887553 66667778889999874 466666633 3346789999999999998887744
|
|
| >PRK07994 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-48 Score=464.65 Aligned_cols=352 Identities=26% Similarity=0.430 Sum_probs=324.5
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|+.|.+||||++|++||||++++..|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|.
T Consensus 1 msy~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 1 MSYQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred CCchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998666678999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..|.+.|++++++....++++++++++.+.+.|..++++||||||+|+|+..++|+||++||+|+.+++||++|+++.
T Consensus 81 ~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~ 160 (647)
T PRK07994 81 EIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (647)
T ss_pred HHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCcc
Confidence 99999999999999887789999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|+|||+.|.|.+++.+++..+|..++..+++.++++++..|+..++|++|+++++++++..+ ++.|+.++|.++
T Consensus 161 kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v~~~ 240 (647)
T PRK07994 161 KLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDVSAM 240 (647)
T ss_pred ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997666 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc---hh-HHHHHHhCCCCc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD---RH-RRKFFRRQPLSK 720 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g---~~-~~~~~~r~~ls~ 720 (1152)
++....+.++++++++..+|...++.++..|+..|.++..++..|+.++|+++..+...... .. ....+ ...+.+
T Consensus 241 lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l-~~la~~ 319 (647)
T PRK07994 241 LGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRL-RELART 319 (647)
T ss_pred HccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHH-HHHHHh
Confidence 99988889999999999999999999999999999999999999999999999876432211 11 11111 122357
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
++.+.|..+++++.++..+|+...++++.||+++++|.
T Consensus 320 ~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~ 357 (647)
T PRK07994 320 LPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRML 357 (647)
T ss_pred CCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999986
|
|
| >PRK07003 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-49 Score=475.48 Aligned_cols=353 Identities=25% Similarity=0.433 Sum_probs=326.0
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|+.|++||||++|++||||+++++.|.+++..++++|.|||+||+|||||++|++|++.++|.......||+.|..|.
T Consensus 1 MsY~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 1 MTYQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred CccHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999998766778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++..+.++++++++++.+.+.|..++++||||||+|+|+...+|+||++||+++.+++|||+||+++
T Consensus 81 ~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~ 160 (830)
T PRK07003 81 EIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQ 160 (830)
T ss_pred HHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChh
Confidence 99999999999999988899999999999998889889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+|+++|+|||+.|+|.+++.+++.++|.+++..+|+.++++++..|++.++|++|+++++|+++..+ .+.|+.+.|.++
T Consensus 161 KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V~~~ 240 (830)
T PRK07003 161 KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAVSGM 240 (830)
T ss_pred hccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999997655 467999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cchhHHHHHHhCCCCcc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDRHRRKFFRRQPLSKE 721 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~~~~~~~~r~~ls~~ 721 (1152)
++......+++++++++.+|...++..+++|+..|.++..++..|+.++++++..+..-. ........+. ....++
T Consensus 241 LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~-~~a~~~ 319 (830)
T PRK07003 241 LGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLR-RFAELL 319 (830)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHH-HHHHhC
Confidence 999999999999999999999999999999999999999999999999999988654221 1111111111 123578
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.|+.+++++......|+.+.++++.||++||+|+.
T Consensus 320 s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~ 357 (830)
T PRK07003 320 SPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLA 357 (830)
T ss_pred CHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999874
|
|
| >PRK14957 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=456.61 Aligned_cols=489 Identities=23% Similarity=0.375 Sum_probs=380.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|++|++||||++|++++||++++..|.+++..++.+|+|||+||+|+|||++|++||+.++|.......||+.|..|..
T Consensus 2 ~y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~ 81 (546)
T PRK14957 2 SYQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVA 81 (546)
T ss_pred CchhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999987666789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+.+.+++++++....++++++++++.+...|+.++++||||||+|+|+..++++|+++||+||..++||++|+++.+
T Consensus 82 i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Ttd~~k 161 (546)
T PRK14957 82 INNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATTDYHK 161 (546)
T ss_pred HhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEECChhh
Confidence 99999999999988788999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++++|++||+.|.|.+++.+++..+|..+++++|+.++++++.+|+..++||+|.++++|++++.+ ++.|+.++|.+++
T Consensus 162 il~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V~~~l 241 (546)
T PRK14957 162 IPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQIKQML 241 (546)
T ss_pred hhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999998766 6689999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHH-HHHHHHHhchhhhhcch---hHHHHHHhCCCCcc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLA-TVITDILAGSYDFTKDR---HRRKFFRRQPLSKE 721 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La-~qiRdLL~ak~~~~~g~---~~~~~~~r~~ls~~ 721 (1152)
+....+.+|++++++..+|...++..++.|...|.+...++..|. .+++ ++..+....... ....... ..+.++
T Consensus 242 ~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r-~~~~~~~~~~~~~~~~~~~~i~-~~a~~~ 319 (546)
T PRK14957 242 GIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFA-CCIYSFTQSLDAVNDIDVDIIN-NILAKI 319 (546)
T ss_pred ccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-HHHHHhcccccccchhhHHHHH-HHHHhC
Confidence 999888999999999999999999999999999999999999998 4555 555443222111 1111222 223578
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCC-CCCCCCccccccCCCCccccCCcccccc
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADT-SFSHSPLDLENAGGRGMTRKGGERAEIS 800 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~-s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1152)
+.+.|..+++++.++...|+...++++.||++|++++.- .|...... .....|. . .....
T Consensus 320 s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~----~p~~~~~~~~~~~~~~------~---~~~~~------ 380 (546)
T PRK14957 320 SIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAF----QKKNLIDKTQTSKSNI------S---PIVSK------ 380 (546)
T ss_pred CHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CCCCCCcccccccCCC------C---ccccc------
Confidence 999999999999999999999999999999999999842 22111000 0000000 0 00000
Q ss_pred cccCCCCccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhcc
Q 036794 801 NKETGVPMNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQN 880 (1152)
Q Consensus 801 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~ 880 (1152)
.+. ..++...+ . ..+.. . ..+.+...+..... ....... ...-|..++.+++-
T Consensus 381 -----~~~-~~~~~~~~----~----~~~~~---~------~~~~~~~~~~~~~~-~~~~~~~---~~~~w~~~~~~l~~ 433 (546)
T PRK14957 381 -----NDI-NLLKNTFK----S----EQPKQ---T------VKAVVAQNNDSTAS-ENTQEQS---LDKKWFNLLNRIKL 433 (546)
T ss_pred -----ccc-cccccccc----c----ccccc---C------CCCCCccCCCCCCC-CCCCCCc---ccCCHHHHHHHhcc
Confidence 000 00000000 0 00000 0 00000000000000 0000000 02339999999987
Q ss_pred chHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhH--HHhHHHHHHHHHHHhCCcEEEEEEEecccc
Q 036794 881 NGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKA--EKFKDQILQAFESVLGSPLTIEIRCESKID 947 (1152)
Q Consensus 881 ~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~--e~~~~~Ie~~~~~vlg~~v~v~i~~~~~~d 947 (1152)
..+-..|.+++.+.+... ..+++........... ......++.+++..+|+++ |.+.+....+
T Consensus 434 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~~~ 498 (546)
T PRK14957 434 KGFTKTLAFNSHLISDNS---ETFVIHLNEDAKKILELDPQSIAKLQASISEYLNNPS-FRLDIKNLAM 498 (546)
T ss_pred cHHHHHHHhcchhhcccC---CeEEEEeCcchHHHhccChhHHHHHHHHHHHHcCCCc-eEeecCcccc
Confidence 665556678899998865 4677777765533332 5556789999999999999 8877665554
|
|
| >PRK14960 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-49 Score=467.78 Aligned_cols=352 Identities=26% Similarity=0.410 Sum_probs=326.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|++|++||||++|++||||+++++.|.+++..++++|+|||+||+|+|||++|++||+.++|.......||+.|..|..
T Consensus 1 ~Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~ 80 (702)
T PRK14960 1 MYQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKA 80 (702)
T ss_pred CchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHH
Confidence 37899999999999999999999999999999999999999999999999999999999999987777799999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..|.+.++++++++.+.++++++++++.+.+.|..++++||||||+|+|+..++++|+++||+++.++.||++|+++.+
T Consensus 81 I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~k 160 (702)
T PRK14960 81 VNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQK 160 (702)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHh
Confidence 99999999999999888899999999999988888899999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++.+|++||++|.|.+++.+++..+|..++.++|+.++++++..|+..++||+|+++++|+++..+ .+.||.++|.+++
T Consensus 161 Ip~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV~~lL 240 (702)
T PRK14960 161 LPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDVKEML 240 (702)
T ss_pred hhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 4579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh----HHHHHHhCCCCcc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH----RRKFFRRQPLSKE 721 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~----~~~~~~r~~ls~~ 721 (1152)
+....+.+|++++++..+|...++..++++...|.++..++..|..++++++..++....... ....+. ..+..+
T Consensus 241 G~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~-~la~~~ 319 (702)
T PRK14960 241 GLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKIL-QLSKLI 319 (702)
T ss_pred ccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHH-HHHHcC
Confidence 999999999999999999999999999999999999999999999999999987654322111 111121 123478
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+...|..+++++.+...+||.+.+++++||+++++||.
T Consensus 320 s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~ 357 (702)
T PRK14960 320 SAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLA 357 (702)
T ss_pred CHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHh
Confidence 89999999999999999999999999999999999985
|
|
| >PRK06647 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-49 Score=469.65 Aligned_cols=356 Identities=27% Similarity=0.466 Sum_probs=328.9
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|+.|++||||++|++|+||+.++..|.+++..++++|+||||||+|+|||++|++||+.++|.......||+.|..|..
T Consensus 2 ~y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~ 81 (563)
T PRK06647 2 SYRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKS 81 (563)
T ss_pred CcHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999987777789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+...+++++++....++++++++.+.+...|+.++++||||||+|+|+..++++|+++||+||..++||++|+++.+
T Consensus 82 i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~k 161 (563)
T PRK06647 82 IDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHK 161 (563)
T ss_pred HHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHH
Confidence 99999999999998777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
++++|++||+.+.|.+++.+++..+|..+++.+|+.++++++.+|+..++||+|.+.++|++++.+ ++.||.++|.+++
T Consensus 162 L~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V~~ll 241 (563)
T PRK06647 162 LPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQIRSKM 241 (563)
T ss_pred hHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 5579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch---hHHHHHHhCCCCccc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR---HRRKFFRRQPLSKEE 722 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~---~~~~~~~r~~ls~~s 722 (1152)
+...++.+|++++++..+|..+++.++..|+..|++|..++..|+++||+|+.++....... .....+. ..+.+|+
T Consensus 242 g~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~-k~~~~~s 320 (563)
T PRK06647 242 GLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLP-EKLREFD 320 (563)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHH-HHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999875332110 0111122 2334699
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCccc
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQY 763 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~ 763 (1152)
.+.|.++++.|.+++.++|++.+++++||+++++||....+
T Consensus 321 ~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~~ 361 (563)
T PRK06647 321 LSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDY 361 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999975433
|
|
| >PRK12323 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=467.03 Aligned_cols=353 Identities=26% Similarity=0.448 Sum_probs=323.5
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC-----CCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-----EQPKPCGF 480 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~-----e~~epcg~ 480 (1152)
|.|+.|++||||++|+|||||+++++.|.+++..++++|.|||+||+|||||++|++|++.++|... ....|||.
T Consensus 1 Msy~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred CcchhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 3589999999999999999999999999999999999999999999999999999999999999532 23479999
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
|..|..+..|.+.+++++++.++.++++++++++.+.+.|..++++||||||+|+|+..++|+||++||+++.+++|||+
T Consensus 81 C~sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILa 160 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILA 160 (700)
T ss_pred cHHHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEE
Confidence 99999999999999999999888999999999999999898899999999999999999999999999999999999999
Q ss_pred cCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHH
Q 036794 561 SSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVP 639 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~E 639 (1152)
||++++++++|+|||+.|.|.+++.+++.++|.+++.++|+.+++++++.|+..++|++|+++++++++..+ ++.|+.+
T Consensus 161 Ttep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~ 240 (700)
T PRK12323 161 TTDPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEE 240 (700)
T ss_pred eCChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997655 4679999
Q ss_pred HHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh---cchhHHHHHHhC
Q 036794 640 LVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT---KDRHRRKFFRRQ 716 (1152)
Q Consensus 640 dV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~---~g~~~~~~~~r~ 716 (1152)
.|.++++....+.++++++.+..+|...++..++.+...|.++..++..|...+++++..+..-. ........+. .
T Consensus 241 ~V~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~-~ 319 (700)
T PRK12323 241 AVRGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIR-R 319 (700)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHH-H
Confidence 99999999999999999999999999999999999999999999999999999999988653221 1111111111 2
Q ss_pred CCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 717 PLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 717 ~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
...+++.+.|+.+++++.+...+|+.+.++++.||++|++|+.
T Consensus 320 ~a~~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~ 362 (700)
T PRK12323 320 LAGRFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLA 362 (700)
T ss_pred HHHhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999984
|
|
| >PRK14955 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-48 Score=450.06 Aligned_cols=353 Identities=30% Similarity=0.507 Sum_probs=326.6
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC--------CCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL--------EQPKPC 478 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~--------e~~epc 478 (1152)
.++.+++||||++|++|+||+.++..|.+++..++.+|+|||+||+|+|||++|++||+.++|... ....||
T Consensus 2 ~~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 2 SYQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred ccHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 377899999999999999999999999999999999999999999999999999999999999632 124799
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEE
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifI 558 (1152)
+.|..|..+..+.+.++.++++....++++++++.+.+...|++++++||||||+|.|+...++.|+++||+|+..++||
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~I 161 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFI 161 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEE
Confidence 99999999999999999999887778899999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----
Q 036794 559 LVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG----- 633 (1152)
Q Consensus 559 LaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg----- 633 (1152)
++|+++.++.++|.+||+.+.|.+++.+++..|+..+++.+|+.++++++++|+..++||+|.+.++|+++..+.
T Consensus 162 l~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~ 241 (397)
T PRK14955 162 FATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEG 241 (397)
T ss_pred EEeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999997763
Q ss_pred -CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH-H
Q 036794 634 -QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR-K 711 (1152)
Q Consensus 634 -~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~-~ 711 (1152)
+.||.++|.++++...++++|++++++..++...|+.+++.|+..|++|..|+..|.++||+++.++.....+.... .
T Consensus 242 ~~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~~~ 321 (397)
T PRK14955 242 EGSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPD 321 (397)
T ss_pred CCccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccCCH
Confidence 36999999999999999999999999999999999999999999999999999999999999999888765543222 2
Q ss_pred HHH---hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 712 FFR---RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 712 ~~~---r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.. ..++.+|+.+.|.++++.+.++|.+||+..+++++||.++++|+.
T Consensus 322 ~~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~ 372 (397)
T PRK14955 322 AVRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIE 372 (397)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHh
Confidence 221 234568999999999999999999999999999999999999985
|
|
| >PRK14961 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-47 Score=439.93 Aligned_cols=352 Identities=27% Similarity=0.459 Sum_probs=325.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.|++|++||||++|++|+||+++++.|.+++..++.+|+|||+||+|+|||++|+++|+.++|.......||+.|..|..
T Consensus 2 ~~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~ 81 (363)
T PRK14961 2 NYQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKE 81 (363)
T ss_pred CcHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 48899999999999999999999999999999999999999999999999999999999999987667789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+.+.++.++++.....+++++++++.+...|+.+.++||||||+|+|+..++++|+++||+++.++.||++|+++++
T Consensus 82 ~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~ 161 (363)
T PRK14961 82 IEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEK 161 (363)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHh
Confidence 99999999999988777889999999999988898899999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elV 645 (1152)
++++|.+||+.+.|++++.+++.++|..+++.+|+.++++++++|+..++||+|.+++.|++++.++ +.||.++|.+++
T Consensus 162 l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v~~~l 241 (363)
T PRK14961 162 IPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNVTDML 241 (363)
T ss_pred hhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987664 579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh-----HHHHHHhCCCCc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH-----RRKFFRRQPLSK 720 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~-----~~~~~~r~~ls~ 720 (1152)
+...+..+|++++++..+|...++..++.|+..|++|..|+..|..++|+++..+........ ....+ ...+.+
T Consensus 242 ~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 320 (363)
T PRK14961 242 GLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQI-QKIAQN 320 (363)
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHH-HHHHHc
Confidence 999999999999999999999999999999999999999999999999999997754322110 11122 223457
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
++.+.|.++++.+.++..+||.+.+++++||+++++|+.
T Consensus 321 ~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~ 359 (363)
T PRK14961 321 NKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAIN 359 (363)
T ss_pred CCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHh
Confidence 899999999999999999999999999999999999984
|
|
| >PRK14953 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-48 Score=454.96 Aligned_cols=350 Identities=31% Similarity=0.558 Sum_probs=326.1
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|.+|++||||++|++++||+.++..|.+++..++++|+||||||+|+|||++|+++|+.++|.......||+.|.+|.
T Consensus 1 m~y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 1 MMYIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred CCchHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 35889999999999999999999999999999999999999999999999999999999999997666668999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.++++++++++.+.++++++.+.+.+...|+.+.++||||||+|+|+.+++++|+++|++|+.+++||++|++++
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 99999999999999888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|.+||+.+.|.+++..++..||..+++.+|+.++++++++|+..++||+|.+.++|++++.+ ++.||.++|.++
T Consensus 161 kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V~~~ 240 (486)
T PRK14953 161 KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVVEEF 240 (486)
T ss_pred HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999766 457999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch--hHHHHHHhCCCCccc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR--HRRKFFRRQPLSKEE 722 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~--~~~~~~~r~~ls~~s 722 (1152)
++....+++|+|++++..+|...|+.+++.|+..|.+|..++..|..+||+++.++....... ....+... ..++
T Consensus 241 lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~~~~~~---~~~~ 317 (486)
T PRK14953 241 LGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVEDFYRK---LEKP 317 (486)
T ss_pred hCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchHHHHHH---hcCC
Confidence 999999999999999999999999999999999999999999999999999999775432211 11123322 5688
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.+.|..+++.+.++..+||+ .+++++||++++++|.
T Consensus 318 ~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~ 353 (486)
T PRK14953 318 LEALLYLEDVINKAFSEART-RDPLRAYELAILKLLY 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHh
Confidence 99999999999999999999 9999999999999995
|
|
| >PRK14949 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=466.39 Aligned_cols=353 Identities=27% Similarity=0.466 Sum_probs=323.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
|.|++|++||||++|++||||++++..|++++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|.
T Consensus 1 MsY~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 1 MSYQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred CCchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 35899999999999999999999999999999999999999999999999999999999999998655557999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....+++.++++++.+.+.|..++++||||||+|+|+.+++++||++||+|+.+++||++|+++.
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~ 160 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQ 160 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCch
Confidence 99999999999999877789999999999998888889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
+++++|++||++|.|.+++.+++..+|..++..+++.++++++..|+..++|++|.++++|+++..+ .+.|+.+.|.++
T Consensus 161 kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V~~l 240 (944)
T PRK14949 161 KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQVQTM 240 (944)
T ss_pred hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999987655 467999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc--hhHHHHHHhCCCCccc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD--RHRRKFFRRQPLSKEE 722 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g--~~~~~~~~r~~ls~~s 722 (1152)
++......+..+++.+..+|...++.++..|+..|+++..|+..|..+||+++..+...... ......++ ..+.+++
T Consensus 241 lG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~~e~i~-~~a~~~s 319 (944)
T PRK14949 241 LGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLYSEQIR-AFAEQLS 319 (944)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccchHHHHH-HHHHhCC
Confidence 99998888999999999999999999999999999999999999999999999876433211 11112222 2345799
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.+.|..+++++.++..+||...++++.||++|++++.
T Consensus 320 ~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~ 356 (944)
T PRK14949 320 PEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA 356 (944)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999884
|
|
| >PRK14962 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-46 Score=441.25 Aligned_cols=448 Identities=26% Similarity=0.445 Sum_probs=368.9
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+.|++||||++|++++||++++..|.+++..++++++|||+||||||||++|+++|+.++|.......||+.|..|..+.
T Consensus 2 ~~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~ 81 (472)
T PRK14962 2 EALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSID 81 (472)
T ss_pred chhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999998877789999999999999
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
.+...++.+++++...+++.++++.+.+...|+++.++||||||+|.|+.++++.|+++|++++.+++||++|+++.+++
T Consensus 82 ~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 82 EGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred cCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCChHhhh
Confidence 99999999999988888999999999988888889999999999999999999999999999999999999999988999
Q ss_pred HHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhc
Q 036794 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGL 647 (1152)
Q Consensus 569 ~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~ 647 (1152)
++|.+||+.+.|.+++..++..+|+.+++.+|+.++++++++|+.+++||+|.++|+|++++.+ ++.||.++|.++++.
T Consensus 162 ~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~~l~~ 241 (472)
T PRK14962 162 PTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHEALGL 241 (472)
T ss_pred HHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999999998766 457999999999999
Q ss_pred cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHH
Q 036794 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLR 727 (1152)
Q Consensus 648 v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~ 727 (1152)
..++.+|++++++..+|...|+.+|.+|+..|++|..|+..|.......+- ..+...+.
T Consensus 242 ~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi~---------------------~a~~~~~~ 300 (472)
T PRK14962 242 IPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDLE---------------------RERANDII 300 (472)
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcc---------------------CCCchHHH
Confidence 999999999999999999999999999999999999999988776543211 11235566
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCcccccCCCCCCCCCCCCCccccccCCCCccccCCcccccccccCCCC
Q 036794 728 QALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGMTRKGGERAEISNKETGVP 807 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~~~~~~~ss~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 807 (1152)
.++..+.++-..++....+..+++++++++|.+ .++. ..+...
T Consensus 301 ~~~~~~~~~~~~i~~~e~~~~l~~~~~~~~~~~----~~~~------------------~~~~~~--------------- 343 (472)
T PRK14962 301 QVSRQLLNILREIKFAEEKRLVCKLGSASIATR----FSSP------------------NVQEND--------------- 343 (472)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHHHHHh----CCCh------------------hHHHHH---------------
Confidence 677788889999999999999999999999952 1110 000000
Q ss_pred ccccccccccCCCCccccCCccccccccccccCCCCccccCCCCCCCCCCCCCCCChhhHHHHHHHHHHHhccc-hHHHH
Q 036794 808 MNVRLENFHAENSGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRIQNN-GTKEF 886 (1152)
Q Consensus 808 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~iW~~vl~~~~~~-~l~~~ 886 (1152)
+ .....+ .... ...+ .. ..+. ..+....+.+ ++..|.++++.++.+ .+..|
T Consensus 344 ----~----~~~~~~----~~~~---~~~~------~~--~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 395 (472)
T PRK14962 344 ----V----EEKNDN----SNVQ---QKEK------KK--EESK----AKEEKQEDIE-FEKRFKELMEELKEKGDLSIF 395 (472)
T ss_pred ----H----Hhhccc----cccc---cccc------hh--hhcc----chhhhhhhhh-HHHHHHHHHHHHHhcCchhhh
Confidence 0 000000 0000 0000 00 0000 0001112333 789999999999863 34555
Q ss_pred HHhcCeEeEEecCCCCeEEEEeCC--chhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEecc
Q 036794 887 LYREGKLISVSFGAAPTVQLTFRS--HLTKSKAEKFKDQILQAFESVLGSPLTIEIRCESK 945 (1152)
Q Consensus 887 l~~~gkl~s~~~~~~~~v~l~F~~--~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~~ 945 (1152)
+...-.++.+.. +++.|.|.. .+++...++.+..|+..+.+++|.+++|++.+..+
T Consensus 396 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 453 (472)
T PRK14962 396 VALSLSEVEEDG---DKVKISFDSSKAMHYELMKEKLPELENLFSRKLGKNVEVELRLMGK 453 (472)
T ss_pred hhhccCCceeeC---CeEEEEeChHHhHHHHHHHHhHHHHHHHHHHHhCCCeeEEEEEecC
Confidence 533444444443 579999996 45666677889999999999999999999988444
|
|
| >TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-46 Score=425.97 Aligned_cols=350 Identities=39% Similarity=0.644 Sum_probs=323.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
|++|.+||||++|++++||+.++..|.+++..++.+|+||||||+|+|||++|+++++.+.|.......||+.|..|..+
T Consensus 1 ~~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~ 80 (355)
T TIGR02397 1 YQVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEI 80 (355)
T ss_pred CccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999865556899999999999
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
..+.+.++.++++....+.+.++++++.+...|++++++||||||+|.++..+++.|+++|++++.+++||++|++++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~~~~l 160 (355)
T TIGR02397 81 NSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTEPHKI 160 (355)
T ss_pred hcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCCHHHH
Confidence 99999999999887677888999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Q 036794 568 PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVG 646 (1152)
Q Consensus 568 ~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elVg 646 (1152)
.++|++||..+.|++++.+++..||..+++++|+.+++++++.|+..++||+|.+.++|++++.++ +.||.++|+++++
T Consensus 161 ~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~~~~~ 240 (355)
T TIGR02397 161 PATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVNELLG 240 (355)
T ss_pred HHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999998774 4699999999999
Q ss_pred ccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc--hhH--HHHHHhCCCCccc
Q 036794 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD--RHR--RKFFRRQPLSKEE 722 (1152)
Q Consensus 647 ~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g--~~~--~~~~~r~~ls~~s 722 (1152)
...+.++|++++++..+|...|+.++..|+..|.+|..|+..|.++|++|+.++...... ... ...+ .+++.+|+
T Consensus 241 ~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l-~~~a~~~s 319 (355)
T TIGR02397 241 LVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFL-KELALKLS 319 (355)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHH-HHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999987542111 111 1122 23567899
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 723 MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 723 ~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
.+.|.++++.|.++|..+|++.+++++||.+++++|
T Consensus 320 ~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 320 LEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 999999999999999999999999999999999998
|
This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis. |
| >KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=415.63 Aligned_cols=323 Identities=50% Similarity=0.733 Sum_probs=284.7
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.++.|++||||++|++++||+.+++.|++++.. +..+.||||||||||||++|+++|++++| +...||++|..|..
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~-~~lp~~LFyGPpGTGKTStalafar~L~~---~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLR-RILPHYLFYGPPGTGKTSTALAFARALNC---EQLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhh-cCCceEEeeCCCCCcHhHHHHHHHHHhcC---ccccccchhhhccc
Confidence 577899999999999999999999999999999 66667999999999999999999999999 34579999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
...|.. +......++..+......... .....++||||||+|.|+.++|++|+++||.++..++||++||++++
T Consensus 98 derGis-----vvr~Kik~fakl~~~~~~~~~-~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsr 171 (346)
T KOG0989|consen 98 DERGIS-----VVREKIKNFAKLTVLLKRSDG-YPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSR 171 (346)
T ss_pred cccccc-----chhhhhcCHHHHhhccccccC-CCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhh
Confidence 988876 333333455555444432211 22256799999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHH-HH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE-LV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~e-lV 645 (1152)
++.+|.|||+.|.|+++++++++.+|+.||.+||++++++++++|+.+++||+|+|+.+||+++..+++||...+.+ +.
T Consensus 172 ii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~~gk~It~~~~~e~~~ 251 (346)
T KOG0989|consen 172 IIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSLLGKRITTSLVNEELA 251 (346)
T ss_pred CChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhccCcccchHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999655555 45
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHH
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEK 725 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~k 725 (1152)
|.++++.+.++++.++++|+.+..+.+++++..|.+|.+|+++|+..+.+++ ..+..........++.... ...++..
T Consensus 252 GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~~-g~~d~~k~~~~~kl~~~~~-~~~dg~~ 329 (346)
T KOG0989|consen 252 GVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDII-GLSDEQKAQISLKLFTRDK-RLEDGED 329 (346)
T ss_pred ccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhccc-hhhcchh
Confidence 5999999999999999999999999999999999999999999999999987 6556666666666666554 6789999
Q ss_pred HHHHHHHHHHHHHHhc
Q 036794 726 LRQALKTLSEAEKQLR 741 (1152)
Q Consensus 726 L~qaL~~L~eaD~qLK 741 (1152)
++.+|..|++++.++.
T Consensus 330 l~~~L~~L~~~~~ql~ 345 (346)
T KOG0989|consen 330 LELALKDLLEAEKQLR 345 (346)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999999875
|
|
| >PRK14959 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=450.33 Aligned_cols=355 Identities=26% Similarity=0.461 Sum_probs=325.6
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.|++|++||||++|+||+||+.++..|.+++..++++|+|||+||+|||||++|++||+.++|.......||+.|..|.
T Consensus 1 ms~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 1 MSHASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred CCcchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 35789999999999999999999999999999999999999999999999999999999999998766778999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....++++++.+.+.+...|+.+.++||||||+|+|+.+++++|+++||+++.+++||++|++++
T Consensus 81 ~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~ 160 (624)
T PRK14959 81 KVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPH 160 (624)
T ss_pred HHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChh
Confidence 99999999999999877889999999999998889999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
+++++|++||+.|.|.+++.+++..+|..++..+++.++++++++|+.+++||+|.++++|++++..+ +.||.++|.++
T Consensus 161 kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V~~~ 240 (624)
T PRK14959 161 KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGARGV 240 (624)
T ss_pred hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999986553 47999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-----hhHHH--HHHhCC
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-----RHRRK--FFRRQP 717 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-----~~~~~--~~~r~~ 717 (1152)
++....+.+|++++++..+|...++.++..|+..|.++..++..|..+||+|+..+..-... ..... .+ ...
T Consensus 241 lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~-~~~ 319 (624)
T PRK14959 241 LGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQW-LGW 319 (624)
T ss_pred hCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHH-HHH
Confidence 99999999999999999999999999999999999999999999999999999876432211 11111 11 123
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCCc
Q 036794 718 LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPDQ 761 (1152)
Q Consensus 718 ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~~ 761 (1152)
+.+++...|..+++.+.++..+|+.+.++++.||++|++|+.-+
T Consensus 320 A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~~ 363 (624)
T PRK14959 320 AKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLP 363 (624)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcc
Confidence 45799999999999999999999999999999999999998543
|
|
| >PRK06305 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=437.71 Aligned_cols=344 Identities=29% Similarity=0.530 Sum_probs=321.5
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSCI 485 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c~ 485 (1152)
.|+.|.+||||++|+||+||+.++..|.+++..++++|+||||||+|+|||++|+++|+.+.|.... ...||+.|..|.
T Consensus 3 ~~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 3 SYQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred chHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 3889999999999999999999999999999999999999999999999999999999999997543 347999999999
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+..+.+.+++++++....++++++++.+.+...|..+.++||||||+|.|+.++++.|+++||+++.+++||++|+++.
T Consensus 83 ~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~~~~ 162 (451)
T PRK06305 83 EISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATTEIH 162 (451)
T ss_pred HHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeCChH
Confidence 99999999999998777788999999999888888889999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.++|++||+.+.|.+++.+++..||..+++++|+.+++++++.|+.+++||+|.++++|++++.+ ++.||.++|.++
T Consensus 163 kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V~~l 242 (451)
T PRK06305 163 KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSVAKA 242 (451)
T ss_pred hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999998766 567999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEME 724 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~ 724 (1152)
++...++++|+|++++..+|..+|+.++..|+..|++|..|+..|.++||+++.++.. ..+ .+...+|+.+
T Consensus 243 ~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~-------~~~--~~~a~~~s~~ 313 (451)
T PRK06305 243 LGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN-------KQL--SSVATKYSSE 313 (451)
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhh-------hHH--HHHHHhCCHH
Confidence 9999999999999999999999999999999999999999999999999999998762 112 2235689999
Q ss_pred HHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 725 KLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 725 kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.|.+++..+.++|+++|++.++.++||.++++++.
T Consensus 314 ~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~ 348 (451)
T PRK06305 314 QLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIR 348 (451)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999985
|
|
| >PRK07133 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-45 Score=446.64 Aligned_cols=347 Identities=33% Similarity=0.559 Sum_probs=316.3
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCcc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSC 484 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c 484 (1152)
+.|.+|++||||++|++|+||+.+++.|.+++..++++|+||||||+|+|||++|++||+.++|.... ...||+.|..|
T Consensus 3 m~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 3 MKYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred cchhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 56899999999999999999999999999999999999999999999999999999999999997532 24689998888
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
. +.+.++++++++++.++++++++++.+...|+.++++||||||+|+|+.+++++|+++||+||.+++||++|+++
T Consensus 83 ~----~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~ 158 (725)
T PRK07133 83 V----NNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEV 158 (725)
T ss_pred h----cCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCCh
Confidence 3 567788999888888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQE 643 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~e 643 (1152)
++++++|++||+++.|.+++..++..+|..++.++|+.+++++++.|+..++|++|.++++|++++.++ +.|+.++|.+
T Consensus 159 ~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~V~e 238 (725)
T PRK07133 159 HKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKNVEE 238 (725)
T ss_pred hhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999987664 4699999999
Q ss_pred HHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch---hHHHHHHhCCCCc
Q 036794 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR---HRRKFFRRQPLSK 720 (1152)
Q Consensus 644 lVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~---~~~~~~~r~~ls~ 720 (1152)
+++....+.+|++++++..++...++..+..|+..|.+|..++..|..++||++..+..-.... ....... .+ +
T Consensus 239 llg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~~~l~--~~-~ 315 (725)
T PRK07133 239 LFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSEEDLE--KL-K 315 (725)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHH--Hh-c
Confidence 9999999999999999999999999999999999999999999999999999998653221110 0011121 12 6
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
++...|.++++.+.++..+||.+.+++++||+++++|+.
T Consensus 316 ~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~ 354 (725)
T PRK07133 316 IDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLA 354 (725)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 789999999999999999999999999999999999985
|
|
| >PRK08451 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=420.84 Aligned_cols=332 Identities=29% Similarity=0.476 Sum_probs=311.6
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+.|++||||++|++++||+++++.|..++..++++|+||||||+|+|||++|++|++++.|.......||+.|..|..+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999998766678999999999999
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
.+.+.+++++++....+++.++++++.....|+.+.++||||||+|+|+.+++++||++||+||.+++||++|+++.+++
T Consensus 82 ~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 82 ENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLP 161 (535)
T ss_pred hcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCc
Confidence 99999999999877788999999999988889989999999999999999999999999999999999999999999999
Q ss_pred HHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHhc
Q 036794 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGL 647 (1152)
Q Consensus 569 ~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elVg~ 647 (1152)
++|+|||+.|+|.+++.+++..||..++.++|+.++++++.+|+..++||+|.++++|++++.++ +.||.++|.++++.
T Consensus 162 ~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~~lg~ 241 (535)
T PRK08451 162 ATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVADMLGL 241 (535)
T ss_pred hHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999999999999999999999987774 57999999999999
Q ss_pred cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHH
Q 036794 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLR 727 (1152)
Q Consensus 648 v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~ 727 (1152)
...+.++++++++..+|...++.++..| .|.++..++..|..++++++... -..+....+.
T Consensus 242 ~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~-----------------~~~~~l~~l~ 302 (535)
T PRK08451 242 LDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSK-----------------DSEFSILLYE 302 (535)
T ss_pred CCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcc-----------------cccccHHHHH
Confidence 9999999999999999999999999999 57999999999999998775321 1234556788
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 728 QALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.+|.+++..++.+.++++.|+++++++|.
T Consensus 303 r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~ 334 (535)
T PRK08451 303 RFFRILSSAKSLLKEGADDGFVLLLMLFKMKE 334 (535)
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 88999999999999999999999999999995
|
|
| >PRK05896 DNA polymerase III subunits gamma and tau; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-44 Score=424.34 Aligned_cols=351 Identities=28% Similarity=0.501 Sum_probs=313.2
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+++|++||||++|++++||+.+++.|.+++..++.+|+|||+||+|+|||++|++||+.++|..+....||+.|..|..
T Consensus 2 ~~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~ 81 (605)
T PRK05896 2 SEITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCES 81 (605)
T ss_pred cchhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999988777789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+.+++++++++.+..++++++++++.+...|+.++++||||||+|+|+.+++++|+++||+|+.+++||++|+.+++
T Consensus 82 i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~K 161 (605)
T PRK05896 82 INTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQK 161 (605)
T ss_pred HHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHh
Confidence 99999999999998878899999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-CCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~-~IT~EdV~elV 645 (1152)
++++|++||+.+.|.+++..++..||..++.++|+.+++++++.|+..++|++|.++++|++++.+.+ .|+.++|.+++
T Consensus 162 Ll~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V~ell 241 (605)
T PRK05896 162 IPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDINKTF 241 (605)
T ss_pred hhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999887744 59999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc----hhHH--HHHH----h
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD----RHRR--KFFR----R 715 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g----~~~~--~~~~----r 715 (1152)
+....+.+|++++++..+|...++.++..|+..|++|..++..|..++||+|..+...... .... .+.. +
T Consensus 242 g~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~~~~~L~~~~~~~~~~~~~~~~~ 321 (605)
T PRK05896 242 GLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNLEKQK 321 (605)
T ss_pred ccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcCChhhhhcCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999866433221 1111 1111 0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
...-.|+...+ +..+.++-.+||.+.++..-+|..+.++..+
T Consensus 322 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
T PRK05896 322 LLSIEFNTNFL---LNNFVSLINRLKASVNQVFEFEIYLYKIINA 363 (605)
T ss_pred HhhhhcccchH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 01112333333 4455567778888999999999999998753
|
|
| >PRK14970 DNA polymerase III subunits gamma and tau; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=394.07 Aligned_cols=342 Identities=27% Similarity=0.457 Sum_probs=303.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+++..|.+||||.+|++++||+.+++.|.+++..++.+++||||||+|+|||++|+++++.++|..... +|
T Consensus 2 ~~~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~--~~------- 72 (367)
T PRK14970 2 ENFVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDD--PN------- 72 (367)
T ss_pred cchHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC--CC-------
Confidence 458899999999999999999999999999999999999999999999999999999999999853221 11
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+...++++++.....+.++++++++.+...|++++++||||||+|.++..+++.|+++|++++..++||++|+...
T Consensus 73 ---~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 73 ---EDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred ---CCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 11123456666656677899999999988889999999999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~el 644 (1152)
++.+++.+||..++|.+++.+++..|+..++.++|+.++++++++|+..++||+|.+.++|++++.+ ++.||.++|.++
T Consensus 150 kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v~~~ 229 (367)
T PRK14970 150 KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAVTEN 229 (367)
T ss_pred cCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999877 556999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hhHHHHHH---hCCCCc
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RHRRKFFR---RQPLSK 720 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~~~~~~~---r~~ls~ 720 (1152)
++...++++|++++++..++..+++..++.|+..|++|..|+..|.++||+|+.++...... .....+.. .+++.+
T Consensus 230 ~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~a~~ 309 (367)
T PRK14970 230 LNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQSQK 309 (367)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999987632110 00001111 335679
Q ss_pred ccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
|+.+.|.+++..|.++|.++|++.++++++|+++++||.
T Consensus 310 ~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~ 348 (367)
T PRK14970 310 VSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLAS 348 (367)
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhh
Confidence 999999999999999999999988999999999999995
|
|
| >PLN03025 replication factor C subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-38 Score=352.21 Aligned_cols=307 Identities=18% Similarity=0.265 Sum_probs=269.1
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
+|.+||||++|++++||++++..|+.++..++.+| +||+||||||||++|+++|+++.|....
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~~---------------- 64 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHELLGPNYK---------------- 64 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHhcccCc----------------
Confidence 79999999999999999999999999999888876 8899999999999999999999875211
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
..+.++++....+.+.+++.+..+...+ ..+.++||||||+|.|+..++++|++++|.++..+.||++||...+
T Consensus 65 ---~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~ 141 (319)
T PLN03025 65 ---EAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSK 141 (319)
T ss_pred ---cceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccc
Confidence 1256666665667778888776643322 2356899999999999999999999999999899999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg 646 (1152)
+.++|++||..+.|++++.+++..+|..+++++|+.++++++++|+..++||+|.++|+||.+....+.||.++|.++++
T Consensus 142 i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~ 221 (319)
T PLN03025 142 IIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATHSGFGFVNQENVFKVCD 221 (319)
T ss_pred cchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999996554446799999999999
Q ss_pred ccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHH
Q 036794 647 LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKL 726 (1152)
Q Consensus 647 ~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL 726 (1152)
....+.+|++++++..+|...|+..+.+|+..|++|..|+..|...++.. .++...-
T Consensus 222 ~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~-----------------------~~~~~~~ 278 (319)
T PLN03025 222 QPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY-----------------------DMPEFLK 278 (319)
T ss_pred CCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------CCCHHHH
Confidence 99999999999999999999999999999999999999999996655421 1222233
Q ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 727 RQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 727 ~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..++..+.++|..+..|.++.+.|+.++.+++.
T Consensus 279 ~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~ 311 (319)
T PLN03025 279 LEYLREIGFAHMRICDGVGSLLQLSGLLAKLCL 311 (319)
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 467889999999999999999999999999873
|
|
| >PRK00440 rfc replication factor C small subunit; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-36 Score=333.67 Aligned_cols=310 Identities=26% Similarity=0.394 Sum_probs=269.6
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+..+|.+||||++|++++|++.++..|..++..+..++ +||+||+|||||++++++++++.+....
T Consensus 3 ~~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~-~ll~G~~G~GKt~~~~~l~~~l~~~~~~------------- 68 (319)
T PRK00440 3 MEEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDWR------------- 68 (319)
T ss_pred ccCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCccc-------------
Confidence 45689999999999999999999999999999887775 7999999999999999999998765311
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHH-hhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNM-VTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a-~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+++++.....+.+.+.+.+... ...|+. +.+++|||||+|.+....++.|+++++.++.++.||++++..
T Consensus 69 ------~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~ 142 (319)
T PRK00440 69 ------ENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYS 142 (319)
T ss_pred ------cceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCc
Confidence 113344333333444444444433 344555 568999999999999999999999999988999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
.++.+++.+||..+.|++++.+++..++..++.++|+.++++++++|+..++||+|.++++|++++.+++.||.++|.++
T Consensus 143 ~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~~~~it~~~v~~~ 222 (319)
T PRK00440 143 SKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAATGKEVTEEAVYKI 222 (319)
T ss_pred cccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999999999999999888888999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIME-TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~-~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++...++++|++++++..++..+|+..|+.|+. .|.++..|+..|..++. ..+++.
T Consensus 223 ~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~~-----------------------~~~~~~ 279 (319)
T PRK00440 223 TGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREVW-----------------------SLDIPE 279 (319)
T ss_pred hCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----------------------hcCCCH
Confidence 999999999999999999999999999999984 89999888777753110 136889
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..|.++++.+.++|+++|++.++.+.||.+++++|.
T Consensus 280 ~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~ 315 (319)
T PRK00440 280 ELKVELIDAIGEADFRITEGANERIQLEALLAKLAL 315 (319)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999984
|
|
| >PRK12402 replication factor C small subunit 2; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-35 Score=327.30 Aligned_cols=321 Identities=26% Similarity=0.385 Sum_probs=264.6
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
..|.+||||++|++|+|++.+++.|..++..+..++ +||+||+|||||++|+++++++.+...... +.+ .+|..+.
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~GtGKT~la~~~~~~l~~~~~~~~--~~~-i~~~~~~ 78 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPWENN--FTE-FNVADFF 78 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCce-EEEECCCCCCHHHHHHHHHHHhcCcccccc--eEE-echhhhh
Confidence 489999999999999999999999999999887765 899999999999999999999987642211 111 1111110
Q ss_pred C------CCccceEE-eCC---CCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 489 R------GKSRNIKE-VGP---VGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 489 ~------g~~~dviE-Ida---as~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
. ...+.+.. ... ......+.+++++.. ....|+.+.+++|||||+|.++.+.++.|++++++++..+.|
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 79 DQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred hcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 0 00010000 000 011234556665544 345566778899999999999999999999999998888999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT 637 (1152)
|++++.+.++.++|.+||..+.|.+++.+++..+|..++.++|+.+++++++.|+.+++||+|.+++.|++++...+.||
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~~~~~~It 238 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAALAAGEIT 238 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCC
Confidence 99998888888899999999999999999999999999999999999999999999999999999999999886667899
Q ss_pred HHHHHHHHhc-cchhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHh
Q 036794 638 VPLVQELVGL-ISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRR 715 (1152)
Q Consensus 638 ~EdV~elVg~-v~ee~ifdLldAils~d~~~ALk~L~~LL-~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r 715 (1152)
.++|.+++.. ..++++|++++++..++..+|+..+.+|+ .+|.++..|+..|.... .
T Consensus 239 ~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~--------------------~- 297 (337)
T PRK12402 239 MEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRVA--------------------R- 297 (337)
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH--------------------H-
Confidence 9999999997 45889999999999999999999999997 79999998888875410 0
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHc
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkL 757 (1152)
.+++...|.+++..|.++|+.+|++.++++.||.++.++
T Consensus 298 ---~~~~~~~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 298 ---SRYRGDNLARLHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred ---HHCCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 128889999999999999999999999999999999886
|
|
| >PRK07940 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-32 Score=318.60 Aligned_cols=335 Identities=21% Similarity=0.323 Sum_probs=264.0
Q ss_pred CcCcccCcHHHHHHHHHHHHhCC---------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRK---------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gr---------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|++|+||+.+++.|++++..++ .+|+|||+||+|+|||++|++||+.++|.... ..|||.|..|..+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~-~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD-EPGCGECRACRTVLA 81 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC-CCCCCCCHHHHHHhc
Confidence 48999999999999999999987 89999999999999999999999999998654 579999999999999
Q ss_pred CCccceEEeCCCC-CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 490 GKSRNIKEVGPVG-NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 490 g~~~dviEIdaas-~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
+.++|+..+.+.+ ..++++++++++.+...|..++++||||||+|.|+..++|+|+++||+|+.+++||++|++++.++
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECChHHCh
Confidence 9999999987653 478999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH---------H----HHhCCC
Q 036794 569 HIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ---------L----SLLGQR 635 (1152)
Q Consensus 569 ~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEk---------L----sLlg~~ 635 (1152)
++|+|||+.+.|++|+.+++..+|.. ..+ ++++++..++..++|++..++..++. + ..+...
T Consensus 162 pTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~~l~~~ 236 (394)
T PRK07940 162 PTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLALRLARV 236 (394)
T ss_pred HHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHHhccch
Confidence 99999999999999999999988863 223 68899999999999999988766432 1 000110
Q ss_pred ---C---------CHHHHHHHHhccchhhHHHHHHHHHcCC-----------HHHHHHHHHHHHHh------CCChHHHH
Q 036794 636 ---I---------SVPLVQELVGLISDEKLVDLLDLALSAD-----------TVNTVKNLRVIMET------GVEPLALM 686 (1152)
Q Consensus 636 ---I---------T~EdV~elVg~v~ee~ifdLldAils~d-----------~~~ALk~L~~LL~~------G~dPl~IL 686 (1152)
+ ....+.+.++...+....++.+.+..++ ...+++.+..+... ......++
T Consensus 237 ~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 316 (394)
T PRK07940 237 SDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDALDRAL 316 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhhHHHHH
Confidence 0 0122344555555666666666643321 22333434332221 13355688
Q ss_pred HHHHHHHHHHHhchhhhhcchhHHHHHH--hCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 687 SQLATVITDILAGSYDFTKDRHRRKFFR--RQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 687 s~La~qiRdLL~ak~~~~~g~~~~~~~~--r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..|..++||++..+..........++.. ...+.+++...|.++++.+.++...++...++++.||.+++++.+
T Consensus 317 ~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~ 391 (394)
T PRK07940 317 VDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQ 391 (394)
T ss_pred HHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 8899999999987653222111111110 113347899999999999999999999999999999999999863
|
|
| >PRK05564 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-32 Score=308.14 Aligned_cols=304 Identities=15% Similarity=0.254 Sum_probs=258.8
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
+|++++||+.+++.|.+++..++++|+|||+||+|+|||++|+.+|+.+.|.... +.++|+..+
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~----------------~~h~D~~~~ 65 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQ----------------REYVDIIEF 65 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCC----------------CCCCCeEEe
Confidence 5999999999999999999999999999999999999999999999999986421 345566666
Q ss_pred CC--CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 499 GP--VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 499 da--as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
.+ ....++++++++++.+...|+.++++|||||++|.|+.+++|+|+++||+||.+++||++|+++++++++|+|||+
T Consensus 66 ~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~SRc~ 145 (313)
T PRK05564 66 KPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIKSRCQ 145 (313)
T ss_pred ccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHHhhce
Confidence 54 2346789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|.+++.+++..||...+. .+++++++.++.+++|+...+...+..-. .. ...+.+|++
T Consensus 146 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~----------~~-----~~~~~~~~~ 206 (313)
T PRK05564 146 IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS----------LK-----NIRNMSLEI 206 (313)
T ss_pred eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH----------HH-----HHHHHHHHH
Confidence 999999999999999976543 57888899999999998888765543211 11 124578999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch--h--HHHHHHhCCCCcccHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR--H--RRKFFRRQPLSKEEMEKLRQALKT 732 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~--~--~~~~~~r~~ls~~s~~kL~qaL~~ 732 (1152)
++++..++...+++.+..+...+.++..++..|..++||++..+....... . ....+ .....+++.+.|.++++.
T Consensus 207 ~~~l~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i-~~~a~~~s~~~L~~~~~~ 285 (313)
T PRK05564 207 LKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDI-KHISEKFSYKKLNKMIEI 285 (313)
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHH-HHHHhhCCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998775322211 1 11111 223458999999999999
Q ss_pred HHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 733 LSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 733 L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
+.+++..+|+..++++.||.+++++.
T Consensus 286 l~~~~~~l~~n~n~~l~le~lll~~~ 311 (313)
T PRK05564 286 INDTRDNLSSNVNPTLVFDSMLIKMQ 311 (313)
T ss_pred HHHHHHHHHHcCCccHHHHHHHHhhh
Confidence 99999999999999999999999985
|
|
| >KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-32 Score=291.01 Aligned_cols=310 Identities=19% Similarity=0.289 Sum_probs=266.7
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.+||||..+.||||+++.+..|.-..+.|..|+ ++|.|||||||||.+.++|+++......
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~k------------- 78 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSYK------------- 78 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCc-eEeeCCCCCchhhHHHHHHHHHhChhhh-------------
Confidence 35569999999999999999999999999999999997 7899999999999999999998765322
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhh---CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVT---SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~---~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
..+.|+++....+++-++.-+..+.. .-.+++.++|||||+|.|+..+|.+|.+++|-+...++|+++||.
T Consensus 79 ------e~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 79 ------EAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred ------hHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhhhhhcc
Confidence 23778888888899888877665432 223488999999999999999999999999999999999999999
Q ss_pred CCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHH
Q 036794 564 LDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE 643 (1152)
Q Consensus 564 ~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~e 643 (1152)
.+++.++|.|||..++|.++++.++..+|..+++.+++.++++.++.+...++||||.++|.|+.....-+.|+.+.|-.
T Consensus 153 s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~~g~g~Vn~enVfK 232 (333)
T KOG0991|consen 153 SEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTVNGFGLVNQENVFK 232 (333)
T ss_pred hhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHhccccccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999877677899999999
Q ss_pred HHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 644 LVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 644 lVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
+++.....-+.+++.+++.++...|+++|.+|...|++|..|+..+++....+-. .+..+-
T Consensus 233 v~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~~~------~E~~rl------------- 293 (333)
T KOG0991|consen 233 VCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNMDV------AESLRL------------- 293 (333)
T ss_pred ccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhccH------HHHHHH-------------
Confidence 9999999999999999999999999999999999999999999999887765411 011111
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.|+.+.-+...+-.+.+..+-|.-++.+||.
T Consensus 294 ----E~ikeig~thmrI~eGv~s~LQl~glla~l~~ 325 (333)
T KOG0991|consen 294 ----EFIKEIGLTHMRILEGVNSLLQLSGLLAKLCK 325 (333)
T ss_pred ----HHHHHHhhHHhHHHhhHhHHHHHHHHHHHHHH
Confidence 22333333444444466777788888888884
|
|
| >PRK08058 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-31 Score=301.30 Aligned_cols=318 Identities=21% Similarity=0.321 Sum_probs=254.4
Q ss_pred CcCcccC-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 419 TFRDLVG-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 419 sFddLVG-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
.|+.|+| |+.+++.|.+.+..++++|+|||+||+|+||+++|++||+.+.|.......||+.|..|..+..+.++|+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 4788999 999999999999999999999999999999999999999999998766778999999999999999999999
Q ss_pred eCCCCC-CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 498 VGPVGN-FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 498 Idaas~-~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
+.+.+. .++++++++++.+...|+.+.++||||||+|.|+.+++|+||++||+||.+++||++|+++.+++++|+|||+
T Consensus 83 i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TIrSRc~ 162 (329)
T PRK08058 83 VAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTILSRCQ 162 (329)
T ss_pred eccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHHHhhce
Confidence 876543 7789999999999888999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|.+++.+++..+|. ++| +++++..+++... |++..+...++.-.+. . ..+.++.+
T Consensus 163 ~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~~-------~--------~~~~~~~~ 220 (329)
T PRK08058 163 VVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSEDDWFA-------Q--------ARALVIKL 220 (329)
T ss_pred eeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhcCchHH-------H--------HHHHHHHH
Confidence 99999999999988775 345 6677777777664 7898887776542110 0 12334445
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCC---ChHHHHHHHHHHHHHHHhchhhhhcchh---HHHHHHhCCCCcccHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGV---EPLALMSQLATVITDILAGSYDFTKDRH---RRKFFRRQPLSKEEMEKLRQAL 730 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~---dPl~ILs~La~qiRdLL~ak~~~~~g~~---~~~~~~r~~ls~~s~~kL~qaL 730 (1152)
++.+..++....+.....+..... ....++..|...+||++..+........ ....+. .....++...|..++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~-~~a~~~s~~~l~~~~ 299 (329)
T PRK08058 221 YEALHEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQ-QLALSYSQQQIVAAL 299 (329)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHH-HHHHhCCHHHHHHHH
Confidence 555555555444433333332222 2335677888999999876542211111 111111 123478999999999
Q ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 731 KTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 731 ~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.++...++...++++.||.+++++.+
T Consensus 300 ~~~~~~~~~l~~n~n~~L~le~lll~~~~ 328 (329)
T PRK08058 300 ELILEAKRRLNSNVNFQLVMEQLVLRLQE 328 (329)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHhccc
Confidence 99999999999999999999999999863
|
|
| >PRK07993 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.6e-30 Score=295.49 Aligned_cols=306 Identities=17% Similarity=0.212 Sum_probs=245.8
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC---
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG--- 502 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas--- 502 (1152)
++...+.|.+++..++.+|+|||+||+|+||+++|.+||+.+.|.......|||.|..|..+..|.++|+..+.+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKS 86 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccc
Confidence 35567889999999999999999999999999999999999999876666799999999999999999999997653
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecC
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~ 582 (1152)
.+++++||++.+.+...|..+.++|+|||++|.|+.++.|+|||+|||||.+++||++|++++.+++||+|||+.+.|++
T Consensus 87 ~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~~~~~~ 166 (334)
T PRK07993 87 SLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRLHYLAP 166 (334)
T ss_pred cCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccccccCCC
Confidence 48899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHH-HHH
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLD-LAL 661 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLld-Ail 661 (1152)
++.+++..||... ..++++.+..++..++|++..++..++.-.. +. ...+++.+. .+.
T Consensus 167 ~~~~~~~~~L~~~-----~~~~~~~a~~~~~la~G~~~~Al~l~~~~~~-------~~---------r~~~~~~l~~~~~ 225 (334)
T PRK07993 167 PPEQYALTWLSRE-----VTMSQDALLAALRLSAGAPGAALALLQPERW-------QQ---------REALCQALAYALP 225 (334)
T ss_pred CCHHHHHHHHHHc-----cCCCHHHHHHHHHHcCCCHHHHHHHhcCchH-------HH---------HHHHHHHHHHHhc
Confidence 9999999998632 2477887888899999999999877753111 00 011111111 111
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhH---HHHHHhCCCCcccHHHHHHHHHHHHHHHH
Q 036794 662 SADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR---RKFFRRQPLSKEEMEKLRQALKTLSEAEK 738 (1152)
Q Consensus 662 s~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~---~~~~~r~~ls~~s~~kL~qaL~~L~eaD~ 738 (1152)
.++....+.. + ...+...++..+...++|++..+... ..... .++.. ....+++...|..+++.+.++..
T Consensus 226 ~~~~~~~~~~---~--~~~~~~~~L~~l~~~~rD~l~~~~~~-~~~~n~d~~~~i~-~~a~~~~~~~l~~~~~~l~~~~~ 298 (334)
T PRK07993 226 SGDWLSLLPA---L--NHEQAPARLHWLATLLMDALKRQHGA-AYVTNQDQPPLVA-QLANHLSPARLQAILGDVCHCRE 298 (334)
T ss_pred CCCHHHHHHH---H--cccCHHHHHHHHHHHHHHHHHHhcCC-cceeCHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHH
Confidence 2233222222 2 24566778899999999999876532 11111 11111 22346889999999999999999
Q ss_pred Hhcc--CCCHHHHHHHHHHHcCC
Q 036794 739 QLRM--SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 739 qLK~--s~dprl~LE~lLLkLa~ 759 (1152)
.+.. ..|+++.||.+++++..
T Consensus 299 ~l~~~~N~N~~L~le~lll~~~~ 321 (334)
T PRK07993 299 QLLSVTGVNRELLLTDLLLRIEH 321 (334)
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 9996 77999999999999963
|
|
| >PHA02544 44 clamp loader, small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-29 Score=282.85 Aligned_cols=295 Identities=16% Similarity=0.227 Sum_probs=239.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.+||||++|++++||+.++..|..++..++.++.|||+||+|+|||++|+++++++++.
T Consensus 7 ~~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~---------------- 70 (316)
T PHA02544 7 NEFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAE---------------- 70 (316)
T ss_pred CCCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCcc----------------
Confidence 3568999999999999999999999999999999999999999999999999999999987543
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTL-SPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~L-s~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+.++++.. ...+.+++.+.. ....+..+.++||||||+|.+ ..++++.|..++++++.++.||++||.+
T Consensus 71 --------~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~ 141 (316)
T PHA02544 71 --------VLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNK 141 (316)
T ss_pred --------ceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCCh
Confidence 22333322 124445553332 333455567899999999999 6677888988999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHH-------HHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTL-------QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL-------~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT 637 (1152)
++++++|++||..+.|+.|+.+++..++ ..++..+|+.++++++..++....||+|.+++.|+.++. ++.|+
T Consensus 142 ~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~-~~~i~ 220 (316)
T PHA02544 142 NGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS-TGKID 220 (316)
T ss_pred hhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc-cCCCC
Confidence 9999999999999999999988876554 445667899999999999999999999999999998764 46799
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCC
Q 036794 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQP 717 (1152)
Q Consensus 638 ~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ 717 (1152)
.+++..+. ...++++++++...|..++.. +...+ +.++..++..+...+..
T Consensus 221 ~~~l~~~~----~~~~~~l~~~l~~~d~~~~~~-~~~~~--~~~~~~~l~~~~~~~~~---------------------- 271 (316)
T PHA02544 221 AGILSEVT----NSDIDDVVEALKAKDFKAVRA-LAPNY--ANDYASFVGKLYDELYP---------------------- 271 (316)
T ss_pred HHHHHHhh----HHHHHHHHHHHHcCCHHHHHH-HHHHh--ccCHHHHHHHHHHHHHH----------------------
Confidence 88887765 577889999998888777665 32222 66777776666554432
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 718 LSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 718 ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
......+.++++.+.+++..+..+.++.+.||.++++++
T Consensus 272 --~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~ 310 (316)
T PHA02544 272 --QVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLM 310 (316)
T ss_pred --hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 124567788899999999999999999999999999987
|
|
| >PRK06871 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-30 Score=289.90 Aligned_cols=307 Identities=17% Similarity=0.224 Sum_probs=240.6
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC--CC
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV--GN 503 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa--s~ 503 (1152)
+....+.|.+++..++.+|+|||+||+|+||+++|++||+.+.|.......|||.|..|..+..|.++|+..+.+. ..
T Consensus 7 ~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (325)
T PRK06871 7 LQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKD 86 (325)
T ss_pred hHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCC
Confidence 4556788999999999999999999999999999999999999987666689999999999999999999999763 34
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
.++++||++.+.+...|..+.++|+|||++|.|+..++|+|||+|||||.+++||++|++++.+++||+|||+.+.|.++
T Consensus 87 I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~~~~~~~ 166 (325)
T PRK06871 87 IGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQTWLIHPP 166 (325)
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceEEeCCCC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHH-HHc
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDL-ALS 662 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldA-ils 662 (1152)
+.+++.+||.... ..+++.+..++..++|++..+...++.-.+ +.-. .+++.+.. ...
T Consensus 167 ~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~-------~~r~---------~~~~~l~~~~~~ 225 (325)
T PRK06871 167 EEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLL-------EQRK---------TFLRQFWLFYRR 225 (325)
T ss_pred CHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChH-------HHHH---------HHHHHHHHHhcc
Confidence 9999999998653 234445666778889999887666543111 0111 11111111 112
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH--hCCCCcccHHHHHHHHHHHHHHHHHh
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR--RQPLSKEEMEKLRQALKTLSEAEKQL 740 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~--r~~ls~~s~~kL~qaL~~L~eaD~qL 740 (1152)
++....+ ..+ . ..+...++..|...++|++..+..........+... ...+.+++.+.|..+++.+.++...+
T Consensus 226 ~~~~~~~---~~~-~-k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~~~r~~L 300 (325)
T PRK06871 226 RSPLELL---PLF-D-KELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQKVRSDL 300 (325)
T ss_pred CCHHHHH---HHH-h-hccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 2222222 222 1 245667788889999999886653322111111111 12235789999999999999999999
Q ss_pred cc--CCCHHHHHHHHHHHcC
Q 036794 741 RM--SNDKLTWLTAALLQLA 758 (1152)
Q Consensus 741 K~--s~dprl~LE~lLLkLa 758 (1152)
+. +.|+.+.|+..|+...
T Consensus 301 ~~~~~iN~~L~l~~~l~~~~ 320 (325)
T PRK06871 301 LQINAVNQELILLDGLTRLV 320 (325)
T ss_pred HcccccCHHHHHHHHHHHHH
Confidence 77 6699999999998775
|
|
| >PRK05707 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=1e-29 Score=288.26 Aligned_cols=303 Identities=19% Similarity=0.222 Sum_probs=238.3
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---CCCCHHHH
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV---GNFDFESI 509 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa---s~~~vdeI 509 (1152)
+.+.+..++.+|+|||+||+|+|||++|++||+.+.|.......|||.|..|..+..+.++|++.+.+. ...++++|
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~i 91 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQV 91 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHH
Confidence 345566799999999999999999999999999999987666789999999999999999999999764 34789999
Q ss_pred HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHH
Q 036794 510 LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589 (1152)
Q Consensus 510 reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~ 589 (1152)
+++.+.+...|..+.++|||||++|.|+.+++|+||++|||||.+++||++|++++.+++||+|||+.+.|.+++.+++.
T Consensus 92 R~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~~~~~~ 171 (328)
T PRK05707 92 RELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPSNEESL 171 (328)
T ss_pred HHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHH
Q 036794 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTV 669 (1152)
Q Consensus 590 eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~AL 669 (1152)
.||.... -..+++.+..++..++|++..++..++.-.+ + ....+++.+..+..+.. .++
T Consensus 172 ~~L~~~~----~~~~~~~~~~~l~la~Gsp~~A~~l~~~~~~-------~---------~r~~~~~~l~~~~~~~~-~~~ 230 (328)
T PRK05707 172 QWLQQAL----PESDERERIELLTLAGGSPLRALQLHEQGVR-------E---------QRARVLDGVKKLLKQQQ-SAS 230 (328)
T ss_pred HHHHHhc----ccCChHHHHHHHHHcCCCHHHHHHHHCcchH-------H---------HHHHHHHHHHHHhcCcc-cHH
Confidence 9997542 1346667777888999999998777543110 0 01122222333232221 233
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hhHH---HHHHhCCCCcccHHHHHHHHHHHHHHHHHhc--cC
Q 036794 670 KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RHRR---KFFRRQPLSKEEMEKLRQALKTLSEAEKQLR--MS 743 (1152)
Q Consensus 670 k~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~~~---~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK--~s 743 (1152)
.....+ .+.+...++..|...++|++..+...... .... ... ...+.+++...|..+++.+.++...++ ..
T Consensus 231 ~~~~~~--~k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l-~~~a~~~~~~~L~~~~~~l~~~~~~l~~~~N 307 (328)
T PRK05707 231 QLAESW--LKVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVL-QYLAQKSPQAKVLALQDWLLEQRQKVLGKAN 307 (328)
T ss_pred HHHHHH--ccCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHH-HHHHHhCCHHHHHHHHHHHHHHHHHhhccCC
Confidence 333332 24566778889999999998866532211 1111 111 112347889999999999999999997 47
Q ss_pred CCHHHHHHHHHHHcCC
Q 036794 744 NDKLTWLTAALLQLAP 759 (1152)
Q Consensus 744 ~dprl~LE~lLLkLa~ 759 (1152)
.++++.||.+++++..
T Consensus 308 vN~~L~le~lll~~~~ 323 (328)
T PRK05707 308 LNRQLLLEALLVQWAG 323 (328)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 7999999999999863
|
|
| >PRK07399 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.5e-29 Score=283.68 Aligned_cols=285 Identities=22% Similarity=0.307 Sum_probs=225.7
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
.|++|+||+.+++.|..++..++++|+|||+||+|+||+++|.++|+.+.|.. +|+.|..|. +..+.++|+..+
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~-----~c~~c~~~~-~~~~~hPDl~~i 75 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQG-----SPSKNIRRR-LEEGNHPDLLWV 75 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----CCCCcHhcc-cccCCCCCEEEE
Confidence 48999999999999999999999999999999999999999999999999984 799999988 888999999987
Q ss_pred CCC-----------------------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCE
Q 036794 499 GPV-----------------------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRV 555 (1152)
Q Consensus 499 daa-----------------------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~V 555 (1152)
.+. ....+++++++.+.+...|+.++++|||||++|.|+..++|+||++||+|| ++
T Consensus 76 ~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~ 154 (314)
T PRK07399 76 EPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NG 154 (314)
T ss_pred eccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CC
Confidence 653 135578999999999999999999999999999999999999999999998 88
Q ss_pred EEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 036794 556 VFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~ 635 (1152)
+||++|++++++++||+|||+.+.|++++.+++.++|......++.. ..+..++..++|+++.+++.++....
T Consensus 155 ~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~~---- 227 (314)
T PRK07399 155 TLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQS---- 227 (314)
T ss_pred eEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHHH----
Confidence 99999999999999999999999999999999999999875443322 22567788899999999998865321
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHH---HHHHHHHHHHHHHhchhhhhcchhHHHH
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLA---LMSQLATVITDILAGSYDFTKDRHRRKF 712 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~---ILs~La~qiRdLL~ak~~~~~g~~~~~~ 712 (1152)
+..+.+.. +..+ ..+...++.+- +.+..+.+... ++..+..+|++
T Consensus 228 ~~~~~~~~-------------~~~~-~~~~~~~~~~a-~~~~~~~~~e~Q~~~l~~~~~~~~~----------------- 275 (314)
T PRK07399 228 IPPELLQK-------------LEQP-PKSPLEALELA-KDISEELDIEQQLWLIDYLQQHYWQ----------------- 275 (314)
T ss_pred HHHHHHHH-------------HHhc-ccCHHHHHHHH-HHHHHhcCHHHHHHHHHHHHHHHHH-----------------
Confidence 11111221 1111 13444444332 22332333322 23333332221
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 713 FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 713 ~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
. +....+++.|.++.+.+....+|++.+|.++++|++
T Consensus 276 --~--------~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 276 --K--------TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred --h--------hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 0 124667889999999999999999999999999985
|
|
| >PRK07471 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.6e-28 Score=277.09 Aligned_cols=324 Identities=18% Similarity=0.211 Sum_probs=240.4
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC----------CCCCCCcc
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK----------PCGFCNSC 484 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e----------pcg~c~~c 484 (1152)
.+|++|++|+||+.+++.|.+++..++++|+|||+||+|+||+++|.+||+.+.|....... +|+.|..|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 68999999999999999999999999999999999999999999999999999997643323 38899999
Q ss_pred ccccCCCccceEEeCCC---------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCE
Q 036794 485 ISHDRGKSRNIKEVGPV---------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRV 555 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaa---------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~V 555 (1152)
..+..+.++|+..+.+. ..+.+++|+++.+.+...+..+.++||||||+|.|+..++|+|+++||+|+.++
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 99999999999998641 236789999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 036794 556 VFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~ 635 (1152)
+||++|++++.+.++|++||+.+.|.+++.+++..+|... +...+++++..++..++|+++.+++.++.-.+
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~~---- 244 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDGL---- 244 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccch----
Confidence 9999999999999999999999999999999999998754 33456666788899999999999888764211
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHhchhhh-hcchh-H--
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVE--PLALMSQLATVITDILAGSYDF-TKDRH-R-- 709 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~d--Pl~ILs~La~qiRdLL~ak~~~-~~g~~-~-- 709 (1152)
+... .+++++......+....+.+...+...+.+ ...++..|..++.+++...... ..... .
T Consensus 245 ---~~~~---------~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~~ 312 (365)
T PRK07471 245 ---ALYR---------RLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPGE 312 (365)
T ss_pred ---HHHH---------HHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccchh
Confidence 1111 112222222223333333333333222211 3345666667777776643220 00000 0
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHcCC
Q 036794 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLR-MSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 710 ~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK-~s~dprl~LE~lLLkLa~ 759 (1152)
...+.. .........+.+..+.+.+.-.... ...|++++++.+|+.+..
T Consensus 313 ~~~l~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~ 362 (365)
T PRK07471 313 AALLAR-LAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAE 362 (365)
T ss_pred hHHHHh-hccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH
Confidence 011111 1122345566666666655555555 377999999999999863
|
|
| >PRK06964 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.1e-28 Score=274.63 Aligned_cols=299 Identities=19% Similarity=0.243 Sum_probs=229.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC-CCCCCCCCCccccccCCCccceEEeCCC-----
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE-QPKPCGFCNSCISHDRGKSRNIKEVGPV----- 501 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-~~epcg~c~~c~~i~~g~~~dviEIdaa----- 501 (1152)
...+.|... .++++|+|||+||+|+||+++|+.||+.++|.... ...|||.|..|..+..+.++|+..+.+.
T Consensus 8 ~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~ 85 (342)
T PRK06964 8 DDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAE 85 (342)
T ss_pred HHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccc
Confidence 344555553 67999999999999999999999999999998743 3579999999999999999999988543
Q ss_pred ------------------------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 502 ------------------------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 502 ------------------------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
..+++++|+++.+.+...|..++++|+|||++|.|+.+++|+|||+|||||.+++|
T Consensus 86 ~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~f 165 (342)
T PRK06964 86 APGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVF 165 (342)
T ss_pred ccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEE
Confidence 24678999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCC
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT 637 (1152)
|++|++++.+++||+|||+.|.|++++.+++..||... + +++. +.++..++|++..++..++.- .
T Consensus 166 iL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~--~~~~--~~~l~~~~Gsp~~Al~~~~~~-----~-- 230 (342)
T PRK06964 166 LLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----G--VADA--DALLAEAGGAPLAALALASDE-----N-- 230 (342)
T ss_pred EEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----C--CChH--HHHHHHcCCCHHHHHHHHCCC-----h--
Confidence 99999999999999999999999999999999998653 3 3332 234666789998887666321 0
Q ss_pred HHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh--HHHHHHh
Q 036794 638 VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH--RRKFFRR 715 (1152)
Q Consensus 638 ~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~--~~~~~~r 715 (1152)
.+....+ ++.+........+.....+. ..+...++..|...++|++..+.....-.. ....+.
T Consensus 231 ~~~~~~~------------~~~l~~~~~~~~~~~~~~~~--k~~~~~~l~~l~~~lrD~l~~~~~~~~~~~~d~~~~l~- 295 (342)
T PRK06964 231 RPLRDWT------------LGQLAAGAACDAFACAETLQ--KLPVPAVLGWLQRWLYDLLAQRLAGAPRYFPAQRAALA- 295 (342)
T ss_pred HHHHHHH------------HHHHhccCchhHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHcCCCceecHhHHHHHH-
Confidence 1111111 11111112222233333332 245667888899999999886653211111 111221
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
....+++...|.++++.+.++...+....++++.||.+++++.
T Consensus 296 ~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~ 338 (342)
T PRK06964 296 RCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYR 338 (342)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHH
Confidence 1234789999999999999999988989999999999999885
|
|
| >COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=276.72 Aligned_cols=255 Identities=22% Similarity=0.352 Sum_probs=215.9
Q ss_pred cchhhhhCCCCcCcccCcHHHH---HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVA---QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~---q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.||..+.||++|+|+|||++++ ..|..++..+.+++ ++|||||||||||+|++||+..++.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~~--------------- 75 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNAA--------------- 75 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCce-eEEECCCCCCHHHHHHHHHHhhCCc---------------
Confidence 5999999999999999999988 57889999998886 7899999999999999999998876
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL- 564 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~- 564 (1152)
+..+++ ...++.+++++++.+......+++.|+||||||.++...|.+||..+|+ ..++||.+|++.
T Consensus 76 ---------f~~~sA-v~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~--G~iilIGATTENP 143 (436)
T COG2256 76 ---------FEALSA-VTSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVEN--GTIILIGATTENP 143 (436)
T ss_pred ---------eEEecc-ccccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcC--CeEEEEeccCCCC
Confidence 334433 3467899999999986666668889999999999999999999999998 789999998754
Q ss_pred C-cchHHHHccceEEEecCCChhHHHHHHHHHHH--HcCCC-----CCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC--
Q 036794 565 D-ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS--KEGIE-----IDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-- 634 (1152)
Q Consensus 565 d-kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak--keGl~-----Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~-- 634 (1152)
. .+.++|+|||+++.|++++.+++...|.+.+. ..|+. ++++++++|+..++||.|.++|.||.+....+
T Consensus 144 sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~~~~~~ 223 (436)
T COG2256 144 SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAALSAEPD 223 (436)
T ss_pred CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHHhcCCC
Confidence 3 68899999999999999999999999998443 34555 88999999999999999999999999877743
Q ss_pred -CCCHHHHHHHHhccch------hhHHH----HHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Q 036794 635 -RISVPLVQELVGLISD------EKLVD----LLDLALSADTVNTVKNLRVIMETGVEPLALMSQLAT 691 (1152)
Q Consensus 635 -~IT~EdV~elVg~v~e------e~ifd----LldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~ 691 (1152)
.++.++++++++.... +..++ +.+.+-..|++.|+.+|-+|++.|+||..|...|..
T Consensus 224 ~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 224 EVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred cccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 3568999998865322 34444 455555679999999999999999999998876655
|
|
| >PRK06090 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.5e-28 Score=271.62 Aligned_cols=301 Identities=20% Similarity=0.283 Sum_probs=232.4
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---C
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV---G 502 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa---s 502 (1152)
+....+.|.+++..++++|+|||+||.|+||+++|+.||+.+.|.... ..|||.|.+|..+..|.++|++.+.+. .
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~-~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~ 86 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQ-SEACGFCHSCELMQSGNHPDLHVIKPEKEGK 86 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCC-CCCCCCCHHHHHHHcCCCCCEEEEecCcCCC
Confidence 456678899999999999999999999999999999999999998743 579999999999999999999999764 3
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecC
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~ 582 (1152)
.+++++|+++.+.+...|..++++|+|||++|.|+..++|+|||+|||||.+++||++|++++++++||+|||+.+.|++
T Consensus 87 ~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~~~~~~ 166 (319)
T PRK06090 87 SITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQWVVTP 166 (319)
T ss_pred cCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcceeEeCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
|+.+++.+||.. .|+. ....++..++|++..+...++.-. .+.-. +.+..+.+.+..
T Consensus 167 ~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~~~-------~~~~~--------~~~~~l~~~l~~ 223 (319)
T PRK06090 167 PSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKEGG-------LEKYH--------KLERQLVDALSG 223 (319)
T ss_pred CCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCCCc-------HHHHH--------HHHHHHHHHHhc
Confidence 999999998863 3443 234567788999998877654210 01111 111222222222
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH-hCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR-RQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~-r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
+. ...+.....+... ...++..|...++|++..+..... ..++. ...+.+++...|...++.+.++..++.
T Consensus 224 ~~-~~~~~~a~~~~~~---~~~~l~~L~~ll~Dll~~~~g~~~----~~~~~~~~~l~~~~~~~l~~~~~~l~~~~~~L~ 295 (319)
T PRK06090 224 PV-SDQLKCASLIAAD---PLTHLSWLWLLLTDAQKVHFGVQN----EYYLPGSAALGPFTYSGLYVSTAKLERLKEQLQ 295 (319)
T ss_pred Cc-ccHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHHhCCcc----hhhhHHHHHHHhhCHHHHHHHHHHHHHHHHHHH
Confidence 22 2333333333222 223566677788898876644211 11111 112245688899999999999999998
Q ss_pred c--CCCHHHHHHHHHHHcC
Q 036794 742 M--SNDKLTWLTAALLQLA 758 (1152)
Q Consensus 742 ~--s~dprl~LE~lLLkLa 758 (1152)
. ..++++.++.++++..
T Consensus 296 ~~~~ln~elll~~lll~~~ 314 (319)
T PRK06090 296 QFSGLNTELLIMNWLIESR 314 (319)
T ss_pred hccccCHHHHHHHHHHHHH
Confidence 6 5589999999998774
|
|
| >PRK04195 replication factor C large subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=280.09 Aligned_cols=282 Identities=23% Similarity=0.321 Sum_probs=228.3
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|.+||||++|++|+||+.++..|..|+.. +..++++||+||||||||++|++||+++++.
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~--------------- 66 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWE--------------- 66 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCC---------------
Confidence 4899999999999999999999999999875 4557789999999999999999999998643
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhh-CCCCC-CceEEEEeCCCCCCH----HHHHHHHHHHhhCCCCEEEEE
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT-SRPPS-QYRIFVFDDCDTLSP----DSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~-~P~~a-~~kVVIIDEID~Ls~----eaqnaLLklLEepp~~VifIL 559 (1152)
++++++......+.+..++..... .+..+ .++||||||+|.|+. ..+++|+++++. ....||+
T Consensus 67 ---------~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIl 135 (482)
T PRK04195 67 ---------VIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIIL 135 (482)
T ss_pred ---------EEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEE
Confidence 455555444445666666665432 34444 789999999999976 568899999996 3456788
Q ss_pred EcCCCCcchH-HHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCH
Q 036794 560 VSSSLDALPH-IIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV 638 (1152)
Q Consensus 560 aTN~~dkL~~-aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~ 638 (1152)
+||++..+.. +|+++|..|.|++++..++..+|..++..+|+.+++++++.|+..++||+|.++|.|+.++...+.|+.
T Consensus 136 i~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~ 215 (482)
T PRK04195 136 TANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAIAEGYGKLTL 215 (482)
T ss_pred eccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcH
Confidence 8888877666 899999999999999999999999999999999999999999999999999999999996654567999
Q ss_pred HHHHHHHhccchhhHHHHHHHHHc-CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCC
Q 036794 639 PLVQELVGLISDEKLVDLLDLALS-ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQP 717 (1152)
Q Consensus 639 EdV~elVg~v~ee~ifdLldAils-~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ 717 (1152)
+++..++....+.++|+++++++. ++...++..+. ....+|..++..|...+-..
T Consensus 216 ~~v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~~~---~~~~~~~~i~~~l~en~~~~--------------------- 271 (482)
T PRK04195 216 EDVKTLGRRDREESIFDALDAVFKARNADQALEASY---DVDEDPDDLIEWIDENIPKE--------------------- 271 (482)
T ss_pred HHHHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHHHH---cccCCHHHHHHHHHhccccc---------------------
Confidence 999999887788999999999997 77877766543 34567766666555543210
Q ss_pred CCcccHHHHHHHHHHHHHHHHHhcc
Q 036794 718 LSKEEMEKLRQALKTLSEAEKQLRM 742 (1152)
Q Consensus 718 ls~~s~~kL~qaL~~L~eaD~qLK~ 742 (1152)
-.+++.+.+++..|+++|..+..
T Consensus 272 --~~~~~~~~~a~~~ls~ad~~~~~ 294 (482)
T PRK04195 272 --YDDPEDIARAYDALSRADIFLGR 294 (482)
T ss_pred --cCCHHHHHHHHHHHhHHHHHHHH
Confidence 12457788888888888887644
|
|
| >PRK13342 recombination factor protein RarA; Reviewed | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.8e-27 Score=275.05 Aligned_cols=256 Identities=22% Similarity=0.366 Sum_probs=211.6
Q ss_pred chhhhhCCCCcCcccCcHHHHHH---HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQA---LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~---Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
||.+||||++|+++|||++++.. |..++..+..+ .+||+||||||||++|++|++.+++.
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~-~ilL~GppGtGKTtLA~~ia~~~~~~---------------- 63 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLS-SMILWGPPGTGKTTLARIIAGATDAP---------------- 63 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCc-eEEEECCCCCCHHHHHHHHHHHhCCC----------------
Confidence 68999999999999999999776 99999887765 57899999999999999999987643
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC-C-
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS-L- 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~-~- 564 (1152)
+..+++. ..+.+.++++++.+......+.+.||||||+|.++...++.|+.++++ ..++||++|+. +
T Consensus 64 --------~~~l~a~-~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~att~n~~ 132 (413)
T PRK13342 64 --------FEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGATTENPS 132 (413)
T ss_pred --------EEEEecc-cccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeCCCChh
Confidence 2333322 234667778887765444446788999999999999999999999997 56777777653 2
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHc--CC-CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE--GI-EIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLV 641 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakke--Gl-~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV 641 (1152)
..+.++|++||..+.|.+++.+++..+|...+... ++ .+++++++.|+++++||+|.+++.|+.++.....|+.+++
T Consensus 133 ~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~~~~It~~~v 212 (413)
T PRK13342 133 FEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALGVDSITLELL 212 (413)
T ss_pred hhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHccCCCCHHHH
Confidence 36889999999999999999999999999987653 55 8999999999999999999999999998777778999999
Q ss_pred HHHHhccc------hhhHHHHHHHHHc----CCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 036794 642 QELVGLIS------DEKLVDLLDLALS----ADTVNTVKNLRVIMETGVEPLALMSQLATVI 693 (1152)
Q Consensus 642 ~elVg~v~------ee~ifdLldAils----~d~~~ALk~L~~LL~~G~dPl~ILs~La~qi 693 (1152)
.++++... .+..++++.++.. .|.+.|+.+|..|+..|++|..|+..|....
T Consensus 213 ~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 213 EEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99987531 1345666555554 8999999999999999999999998776643
|
|
| >PRK09112 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.3e-27 Score=271.29 Aligned_cols=214 Identities=23% Similarity=0.319 Sum_probs=192.7
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC------CCCCCCCCCCcccc
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL------EQPKPCGFCNSCIS 486 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~------e~~epcg~c~~c~~ 486 (1152)
..+.|..|++|+||+.++..|..++..++.+|+|||+||+|+|||++|+.+|+.+.|... ....||+.|..|..
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 347899999999999999999999999999999999999999999999999999999421 12258999999999
Q ss_pred ccCCCccceEEeCCC---------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 487 HDRGKSRNIKEVGPV---------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 487 i~~g~~~dviEIdaa---------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
+..+.++|+..+... ....+++++++.+.+...+..++++||||||+|.|+..++|+||++||+|+.+++|
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 999999999876421 23568999999999888888899999999999999999999999999999999999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ 628 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEk 628 (1152)
|++|+.+..+.++|+|||+.+.|++++.+++..+|.......+ ++++++..++..++|++|.++++++.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999998654433 77999999999999999999998865
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.4e-26 Score=286.42 Aligned_cols=271 Identities=23% Similarity=0.328 Sum_probs=242.2
Q ss_pred EEEEc--CCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCC
Q 036794 446 YVFYG--PHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPP 522 (1152)
Q Consensus 446 yLL~G--PpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~ 522 (1152)
+++.| |.+.||||+|++||+.+.+... ..++++++++...+++.+++++..+. ..|..
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~-------------------~~~~lElNASd~rgid~IR~iIk~~a~~~~~~ 627 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENW-------------------RHNFLELNASDERGINVIREKVKEFARTKPIG 627 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccc-------------------cCeEEEEeCCCcccHHHHHHHHHHHHhcCCcC
Confidence 56779 9999999999999999865422 23489999988889999999998754 44443
Q ss_pred C-CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCC
Q 036794 523 S-QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGI 601 (1152)
Q Consensus 523 a-~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl 601 (1152)
+ +++||||||+|.|+.++|++|+++||+|+.++.||++||++.+++++|+|||+.+.|++++.+++..+|.++++++|+
T Consensus 628 ~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~~~Egi 707 (846)
T PRK04132 628 GASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGL 707 (846)
T ss_pred CCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 3 579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCC
Q 036794 602 EIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGV 680 (1152)
Q Consensus 602 ~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL-~~G~ 680 (1152)
.++++++..|+..++||+|.++|.|+.++...+.||.++|..+.+....+.++++++.++.++...+...+++++ ..|.
T Consensus 708 ~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~ell~~~G~ 787 (846)
T PRK04132 708 ELTEEGLQAILYIAEGDMRRAINILQAAAALDDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGL 787 (846)
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999887777899999999999998999999999999999999999999987 7999
Q ss_pred ChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 681 EPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 681 dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
++..++..|...+.+. ..+.....+++..+.++|..+..+.++.+.|+.++.+++
T Consensus 788 ~~~~iL~~l~~~l~~~-----------------------~i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a~la~~~ 842 (846)
T PRK04132 788 SGEDVLVQMHREVFNL-----------------------PIDEPKKVELADKIGEYNFRLVEGANEMIQLEALLAQFT 842 (846)
T ss_pred CHHHHHHHHHHHHHhc-----------------------CCCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHHHHHHHH
Confidence 9999999998876421 122334457788999999999999999999999999986
|
|
| >PRK08769 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-26 Score=259.77 Aligned_cols=291 Identities=17% Similarity=0.181 Sum_probs=226.8
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC--CC--
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG--PV-- 501 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId--aa-- 501 (1152)
++.+.+.|..++..++.+|+|||+||+|+||+++|.+||+.+.|... .+|+.|..|..+..+.++|+..+. +.
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~---~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~ 85 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP---DPAAAQRTRQLIAAGTHPDLQLVSFIPNRT 85 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC---CCCCcchHHHHHhcCCCCCEEEEecCCCcc
Confidence 56788999999999999999999999999999999999999999742 468889999999999999999883 32
Q ss_pred -----CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 502 -----GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 502 -----s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..+.+++|+++.+.+...|..++++|||||++|.|+..++|+|||+|||||.+++||++|++++.+++||+|||+
T Consensus 86 ~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRCq 165 (319)
T PRK08769 86 GDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRCQ 165 (319)
T ss_pred cccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhhe
Confidence 135799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|.+++.+++..||.. .| ++++.+..++..++|++..+...++.-.. +. ...+++.
T Consensus 166 ~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~-------~~---------r~~~~~~ 223 (319)
T PRK08769 166 RLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGL-------AL---------RRAVAQD 223 (319)
T ss_pred EeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchH-------HH---------HHHHHHH
Confidence 999999999999999863 23 56666667788899999988776643110 00 0111122
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEA 736 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~qaL~~L~ea 736 (1152)
+..+..+.. .++.....+...+. . ..+...++|++..+.. . . .|+ ......|.+....|.+.
T Consensus 224 l~~~~~~~~-~~~~~a~~~~~~~~--~---~~l~~~~~Dll~~~~~--~--~--~~~------~~~~~~L~~~~~~l~~~ 285 (319)
T PRK08769 224 LEQIASGRA-GAVDVAQRWTNDGQ--A---DQRLRHAADLALAQAS--A--G--LTD------PSRLHKLATWFDAANRT 285 (319)
T ss_pred HHHhccCcc-cHHHHHHHHccCCc--H---HHHHHHHHHHHHHhcC--C--c--ccC------hhhHHHHHHHHHHHHHH
Confidence 222222222 24444444333221 1 5777788888876541 1 1 111 11567788888888888
Q ss_pred HHHhccCCCHHHHHHHHHHHcCC
Q 036794 737 EKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 737 D~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
-..+..+.|+++.+|.+++++..
T Consensus 286 ~~~~~~~lN~~L~le~lll~~~~ 308 (319)
T PRK08769 286 RDLLRTTVRADLAVTELLLAWRE 308 (319)
T ss_pred HHhccCCCCHHHHHHHHHHHHHH
Confidence 88888899999999999999963
|
|
| >PRK08699 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-26 Score=258.43 Aligned_cols=297 Identities=19% Similarity=0.285 Sum_probs=231.2
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCC-CCCCCCCCccccccCCCccceEEeCCCC----
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ-PKPCGFCNSCISHDRGKSRNIKEVGPVG---- 502 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-~epcg~c~~c~~i~~g~~~dviEIdaas---- 502 (1152)
...+.|... .++.+|+|||+||+|+|||++|+.||+.+.|..... ..||+.|..|..+..+.++|++++.+.+
T Consensus 8 ~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~ 85 (325)
T PRK08699 8 EQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPE 85 (325)
T ss_pred HHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccccc
Confidence 334445444 579999999999999999999999999999976533 4699999999999999999999998742
Q ss_pred ------CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 503 ------NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 503 ------~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
.+++++||++.+.+...|..+.++|||||+++.|+..++++|+++||+++.++.||++|++++.++++|.+||+
T Consensus 86 ~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc~ 165 (325)
T PRK08699 86 NGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRCR 165 (325)
T ss_pred ccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHhh
Confidence 36899999999999999999999999999999999999999999999998889999999999999999999999
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+.|++++.+++..||.. .|+.... + .+ ..++|....+. . ++..+. .. ++
T Consensus 166 ~~~~~~~~~~~~~~~L~~----~~~~~~~-~--~l-~~~~g~p~~~~---------~-----~~~~~~-----r~---~~ 215 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE----RGVAEPE-E--RL-AFHSGAPLFDE---------E-----PELRAL-----RI---KL 215 (325)
T ss_pred hhcCCCCCHHHHHHHHHh----cCCCcHH-H--HH-HHhCCChhhhc---------C-----chHHHH-----HH---HH
Confidence 999999999999999864 3443221 2 23 34556553210 0 011110 01 22
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH---HHHHhCCCCcccHHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR---KFFRRQPLSKEEMEKLRQALKTL 733 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~---~~~~r~~ls~~s~~kL~qaL~~L 733 (1152)
++.+...+....+..+..+...+.+...++..|...++|++..+.... ..... +.+. ....+++...|.++++.+
T Consensus 216 ~~~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~-~~~~~d~~~~l~-~~a~~~~~~~L~~~~~~l 293 (325)
T PRK08699 216 LDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMK-PVYYPAYEDRLL-QTASGFRPRNVFAAEDML 293 (325)
T ss_pred HHHHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCC-cccCHhHHHHHH-HHHHhcCHHHHHHHHHHH
Confidence 333445556666677777766667788899999999999998764311 11111 1111 123478999999999999
Q ss_pred HHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 734 SEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 734 ~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
.++...++...|+++.||.+++++.
T Consensus 294 ~~~~~~l~~n~n~~L~le~lll~~~ 318 (325)
T PRK08699 294 KQLAPYGFHTLNVKMQIEHLLINYL 318 (325)
T ss_pred HHHHHHhhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999985
|
|
| >PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-26 Score=280.98 Aligned_cols=259 Identities=19% Similarity=0.289 Sum_probs=209.6
Q ss_pred cccchhhhhCCCCcCcccCcHHHHH---HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQ---ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q---~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...||.++|||++|++++||++++. .|..++..++.++ +|||||||||||++|+++++.+++.+.
T Consensus 14 ~~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~s-lLL~GPpGtGKTTLA~aIA~~~~~~f~----------- 81 (725)
T PRK13341 14 SEAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGS-LILYGPPGVGKTTLARIIANHTRAHFS----------- 81 (725)
T ss_pred ccCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHhcCcce-----------
Confidence 3559999999999999999999884 6888888888765 789999999999999999998765421
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
.+++. ..+..++++.++.+. ..+..+.+.+|||||+|.|+...+++|+.++++ ..++||.+|+
T Consensus 82 -------------~lna~-~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI~aTT 145 (725)
T PRK13341 82 -------------SLNAV-LAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLIGATT 145 (725)
T ss_pred -------------eehhh-hhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEEEecC
Confidence 11111 123344555555442 222335678999999999999999999999987 5677777775
Q ss_pred CC--CcchHHHHccceEEEecCCChhHHHHHHHHHHH-------HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC
Q 036794 563 SL--DALPHIIISRCQKFFFPKMKDADIIYTLQWIAS-------KEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG 633 (1152)
Q Consensus 563 ~~--dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak-------keGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg 633 (1152)
.. ..+.++|.|||..|.|++++.+++..+++.++. .+++.+++++++.|+.+++||+|.++|.|+.++...
T Consensus 146 enp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a~~~~ 225 (725)
T PRK13341 146 ENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELAVEST 225 (725)
T ss_pred CChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Confidence 43 368889999999999999999999999999887 467899999999999999999999999999986531
Q ss_pred -----C--CCCHHHHHHHHhc----------cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Q 036794 634 -----Q--RISVPLVQELVGL----------ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVI 693 (1152)
Q Consensus 634 -----~--~IT~EdV~elVg~----------v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qi 693 (1152)
+ .||.+.+.+++.. ...+.+..+++++..+|++.|+.+|.+|+..|+||..|+..|....
T Consensus 226 ~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~a 302 (725)
T PRK13341 226 PPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIAA 302 (725)
T ss_pred ccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 1 2788888887643 4456788899999999999999999999999999999988766643
|
|
| >PRK07452 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=249.74 Aligned_cols=294 Identities=17% Similarity=0.224 Sum_probs=242.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a 523 (1152)
++|||||+.-.-+...++.+.+.+..+.. ...++..+++. +.+.+.++++.+...|+++
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~------------------~~fn~~~~d~~---~~~~~~~~~~~~~t~pff~ 60 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEW------------------KSFNYSRLDGD---DADQAIQALNEAMTPPFGS 60 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchh------------------hhcchhhcCCc---cchHHHHHHHHhcCCCCCC
Confidence 47999999999998888888876643211 01123334321 2334677888888889999
Q ss_pred CceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEEEEEc-CCCC---cchHHHHccceEEEecCC---ChhHHHHHHH
Q 036794 524 QYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVFILVS-SSLD---ALPHIIISRCQKFFFPKM---KDADIIYTLQ 593 (1152)
Q Consensus 524 ~~kVVIIDEID~L---s~eaqnaLLklLEepp~~VifILaT-N~~d---kL~~aL~SR~qvI~F~~p---~~~EI~eiL~ 593 (1152)
++++|+|++++.+ +.+..+.|..+++.+++++++|+++ +.++ ++...+...+.+..|.++ +.+++..|+.
T Consensus 61 ~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l~~~i~ 140 (326)
T PRK07452 61 GGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGLKQLVE 140 (326)
T ss_pred CceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHHHHHHH
Confidence 9999999998665 5677889999999988888888864 4443 456667777888888766 4567999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--C--CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHH
Q 036794 594 WIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--G--QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTV 669 (1152)
Q Consensus 594 ~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g--~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~AL 669 (1152)
..+++.|+.|+++|+++|+.+.++|++.+.|+|+++++| + +.||.++|.+++... ++++|+++++++.+|..+|+
T Consensus 141 ~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~~~~A~ 219 (326)
T PRK07452 141 RTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGNTGKAL 219 (326)
T ss_pred HHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCCHHHHH
Confidence 999999999999999999999999999999999999988 3 369999999999886 68999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh-H-------------HHHHHhCCCCcccHHHHHHHHHHHHH
Q 036794 670 KNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH-R-------------RKFFRRQPLSKEEMEKLRQALKTLSE 735 (1152)
Q Consensus 670 k~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~-~-------------~~~~~r~~ls~~s~~kL~qaL~~L~e 735 (1152)
+.|+.|+.+|++|+.|++.|.++||.|+.++.....|.. . +.++..+++.+|+.+.|.+++..|.+
T Consensus 220 ~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l~~L~~ 299 (326)
T PRK07452 220 ALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLLPLLLD 299 (326)
T ss_pred HHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988765433321 1 12223445779999999999999999
Q ss_pred HHHHhccCCCHHHHHHHHHHHcCC
Q 036794 736 AEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 736 aD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+|.++|++.++..+||.+++++|.
T Consensus 300 ~D~~iK~g~~~~~~le~~i~~~~~ 323 (326)
T PRK07452 300 LEASLKQGANPINALQDKLIELCQ 323 (326)
T ss_pred HHHHHhcCCChHHHHHHHHHHHHH
Confidence 999999999999999999999995
|
|
| >PRK07914 hypothetical protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-24 Score=246.29 Aligned_cols=293 Identities=14% Similarity=0.139 Sum_probs=241.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc-cCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC-QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~-~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~ 519 (1152)
.+.+.|||||+.-.-.......|.+.+.. ... ...++..+++. ..++++ + ..+...
T Consensus 3 ~l~~iYll~G~E~~l~~~~~~~i~~~~~~~~~~------------------~~~n~~~~d~~-~~~~~~---i-~~~~t~ 59 (320)
T PRK07914 3 EPAPLHLVLGDEELLVERAVAAVLRSARQRAGT------------------ADVPVSRMRAG-DVSTYE---L-AELLSP 59 (320)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHhcCcCC------------------CCCceEEeccc-cCCHHH---H-HHhcCC
Confidence 35678999999988888777777665542 110 01124455432 234433 3 444477
Q ss_pred CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC---cchHHHHccc-eEEEecCC-ChhHHHHHHHH
Q 036794 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD---ALPHIIISRC-QKFFFPKM-KDADIIYTLQW 594 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d---kL~~aL~SR~-qvI~F~~p-~~~EI~eiL~~ 594 (1152)
|+++++++|+|+++..+..+..+.|..+++.+++.+++|++++... ++.++|.... .++.|.++ +..++..|+..
T Consensus 60 plF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~~wi~~ 139 (320)
T PRK07914 60 SLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERADFVRK 139 (320)
T ss_pred CCCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHHHHHHH
Confidence 9999999999999877777777899999999988888888764332 3555677664 58899999 99999999999
Q ss_pred HHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHH
Q 036794 595 IASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR 673 (1152)
Q Consensus 595 iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~ 673 (1152)
.+++.|+.|+++|+++|+++.++|+..+.++|++++++ ++.||.++|.+++....+.++|+++|+++.+|..+|+.+|+
T Consensus 140 ~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A~~~l~ 219 (320)
T PRK07914 140 EFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGAAEALR 219 (320)
T ss_pred HHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHHHHHHH
Confidence 99999999999999999999999999999999999876 66899999999999999999999999999999999999999
Q ss_pred HHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 674 VIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 674 ~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
.|+..|++|+.|++.|+++||.|+.++... + ....+++ .+++++|+.++|.+++..|.++|.++|
T Consensus 220 ~L~~~ge~p~~il~~l~~~~r~L~~~k~~~--~-~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~lK 296 (320)
T PRK07914 220 WAMMRGEPHVVLADALAEAVHTIARVGPLS--G-DPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNADVK 296 (320)
T ss_pred HHHHCCCchHHHHHHHHHHHHHHHHHHHhc--C-CHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987541 2 2222211 346779999999999999999999999
Q ss_pred c-CCCHHHHHHHHHHHcCC
Q 036794 742 M-SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 742 ~-s~dprl~LE~lLLkLa~ 759 (1152)
+ ..++.++||.+++++|.
T Consensus 297 ~~~~~~~~~lE~~i~~~~~ 315 (320)
T PRK07914 297 GAAADADYALESAVRRVAE 315 (320)
T ss_pred cCCCChHHHHHHHHHHHHH
Confidence 8 57999999999999995
|
|
| >PRK07276 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=242.27 Aligned_cols=192 Identities=25% Similarity=0.440 Sum_probs=170.0
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC-
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN- 503 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~- 503 (1152)
.|+.+++.|..++..++++|+|||+|| +||+++|+.||+.+.|.......|||.|..|..+..+.++|+..+.+.+.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~ 83 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQV 83 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCc
Confidence 478899999999999999999999996 68999999999999999766668999999999999999999999988654
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
+++++|+++...+...|..+.++|+|||++|.|+..+.|+|||+|||||.+++||++|++++.+++||+|||+.|.|++
T Consensus 84 I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i~f~~- 162 (290)
T PRK07276 84 IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIFHFPK- 162 (290)
T ss_pred CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceeeeCCC-
Confidence 6899999999999999999999999999999999999999999999999999999999999999999999999999976
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
+.+++.++|. ++| ++.+....++... |++..|+..+
T Consensus 163 ~~~~~~~~L~----~~g--~~~~~a~~la~~~-~s~~~A~~l~ 198 (290)
T PRK07276 163 NEAYLIQLLE----QKG--LLKTQAELLAKLA-QSTSEAEKLA 198 (290)
T ss_pred cHHHHHHHHH----HcC--CChHHHHHHHHHC-CCHHHHHHHh
Confidence 6666666654 456 4555556666555 5788877665
|
|
| >PRK05629 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.1e-24 Score=242.46 Aligned_cols=294 Identities=13% Similarity=0.124 Sum_probs=237.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
.+.++|||||+.-.-.......|.+.+..... ...++..+++ ...++++ +++.. ..|
T Consensus 4 ~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~------------------~~~n~~~~d~-~e~~~~~---l~~~~-t~s 60 (318)
T PRK05629 4 VQPPVHLVLGDDEFLAERARLNIVHDIRSSMA------------------DSLQVTTLKA-SEVSQGE---LLDAL-SPS 60 (318)
T ss_pred cCCceEEEEeCHHHHHHHHHHHHHHHHhccCC------------------CCCceEEeec-ccCCHHH---HHHhh-CcC
Confidence 45679999998765555555555555432211 1123555553 2234444 44433 678
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC---cchHHHHccceEEEecCCChhHHHHHHHHHHH
Q 036794 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD---ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d---kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak 597 (1152)
+++.+++|+|+..+.......+.|+.+++.+++++++|+++...+ ++.+.|...+..+.|.++...++..|+...++
T Consensus 61 lF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi~~~~~ 140 (318)
T PRK05629 61 LFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWVTQEFK 140 (318)
T ss_pred ccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHHHHHHH
Confidence 999999999999877666667889999999888888888876543 35567888888999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHH
Q 036794 598 KEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM 676 (1152)
Q Consensus 598 keGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL 676 (1152)
+.|+.|+++|+++|+..+++|+..+.++|++|+++ ++.||.++|++++....+.++|+++|+++.+|..+|+.+|++|+
T Consensus 141 ~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~l~~l~ 220 (318)
T PRK05629 141 NHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVASTRRAL 220 (318)
T ss_pred HcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999877 56799999999999999999999999999999999999999999
Q ss_pred HhCCChHHHHHHHHHHHHHHHhchhhhhcch-hHH---------HHHH---hCCCCcccHHHHHHHHHHHHHHHHHhcc-
Q 036794 677 ETGVEPLALMSQLATVITDILAGSYDFTKDR-HRR---------KFFR---RQPLSKEEMEKLRQALKTLSEAEKQLRM- 742 (1152)
Q Consensus 677 ~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~-~~~---------~~~~---r~~ls~~s~~kL~qaL~~L~eaD~qLK~- 742 (1152)
..|++|+.|++.|.++++.++.... ..+. ... +|.. .+++++|+.+.|.+++..|.++|.++|+
T Consensus 221 ~~g~~pi~il~~l~~~~r~l~~l~~--~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~K~~ 298 (318)
T PRK05629 221 QLGVSPVALAAALSMKVGQIARLYS--TRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAVKGQ 298 (318)
T ss_pred HcCCCcHHHHHHHHHHHHHHHHHHh--hcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCC
Confidence 9999999999999998777654322 1111 111 1211 3467799999999999999999999998
Q ss_pred CCCHHHHHHHHHHHcCC
Q 036794 743 SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 743 s~dprl~LE~lLLkLa~ 759 (1152)
+.++.+.||.++++++.
T Consensus 299 ~~d~~~~lE~~i~~~~~ 315 (318)
T PRK05629 299 GGDPEFAIESAVRRVAE 315 (318)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 55999999999999984
|
|
| >PRK05907 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-24 Score=242.46 Aligned_cols=288 Identities=16% Similarity=0.156 Sum_probs=231.6
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-cccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde 508 (1152)
+..+.+.++.|+ ++||+||..- ..+.+.|.+.+ +... ..++. ..+++
T Consensus 7 ~~~~~~~~~~~~--~~y~~~g~~~---~~~~~~l~~~~~~~~~------------------------~~fdg-~~~~~-- 54 (311)
T PRK05907 7 FKDFSQYYEEKR--PAVIVIGSSS---EEDKDIFIELLVSGRK------------------------SEFDG-QGLLQ-- 54 (311)
T ss_pred HHHHHHHHhcCC--ceEEEecCCc---HHHHHHHHHHhCCCcc------------------------ceecC-CCCCH--
Confidence 345566678888 7899999876 55555554444 3221 11222 22334
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEE-EEcCCCCc---chHHHHccceEE----Ee
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI-LVSSSLDA---LPHIIISRCQKF----FF 580 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifI-LaTN~~dk---L~~aL~SR~qvI----~F 580 (1152)
.++++.+...|+++.+++|++.+.+.+.....+.|..++++|++.+++| ++. ..++ +...|.. +..+ .|
T Consensus 55 -~~ii~~aetlPfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k-~~~v~~~~e~ 131 (311)
T PRK05907 55 -QELLSWTEHFGLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSS-ALCLSLFGEW 131 (311)
T ss_pred -HHHHHHHhcCCcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhh-cceecccccc
Confidence 4566777778999999999998888777767789999999998875555 554 3332 3344443 4444 89
Q ss_pred cCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh---CCCCCHHHHHHHHhccchhhHHHH
Q 036794 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRS-DGSLRDAEMTLEQLSLL---GQRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 581 ~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s-~GDLR~Ain~LEkLsLl---g~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
+++.+.++..|+...++++|+.|+++|+++|+.++ ++|+..+.++|++|++| ++.||.++|.+++....++++|+|
T Consensus 132 ~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~nIF~L 211 (311)
T PRK05907 132 FADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAASLWKL 211 (311)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCcccccHHHH
Confidence 99999999999999999999999999999999999 69999999999999888 346999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHh-CCChHHHHHHHHHHHHHHHhchhhhhcchhH-HHHHHhCCCCcccHHHHHHHHHHHH
Q 036794 657 LDLALSADTVNTVKNLRVIMET-GVEPLALMSQLATVITDILAGSYDFTKDRHR-RKFFRRQPLSKEEMEKLRQALKTLS 734 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~-G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~-~~~~~r~~ls~~s~~kL~qaL~~L~ 734 (1152)
+|++..++..+|+++++.|+.+ |++|+.|++.|++|| |+.++.....+... ..||. -|+.++|.+++..|.
T Consensus 212 ~dai~~~~~~~Al~il~~Ll~~~ge~p~~ILall~rQf--l~~~k~l~~~g~~~~~p~~v-----afs~~~L~~~~~~l~ 284 (311)
T PRK05907 212 RDALLRRDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQC--LYGLRSIEEQSKERKHRIFV-----AYGKERLLQALNLLF 284 (311)
T ss_pred HHHHHccCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHHHhcCCCCCCeEE-----EECHHHHHHHHHHHH
Confidence 9999999999999999999999 999999999999999 88877665554421 12222 289999999999999
Q ss_pred HHHHHhcc-CCCHHHHHHHHHHHcCC
Q 036794 735 EAEKQLRM-SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 735 eaD~qLK~-s~dprl~LE~lLLkLa~ 759 (1152)
++|.++|+ ..++.++||.+++++|.
T Consensus 285 ~~D~~iKtg~~d~~~~lElli~~~~~ 310 (311)
T PRK05907 285 YAESLIKNNVQDPILAVETLVIRMTN 310 (311)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHHhc
Confidence 99999999 45999999999999984
|
|
| >PRK06585 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.7e-24 Score=241.98 Aligned_cols=296 Identities=18% Similarity=0.195 Sum_probs=239.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
...++|||||+........++.+.+.+...... ..++..+++... + .++.++++.+...|
T Consensus 18 ~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~~------------------~fn~~~~~~~e~-~-~~~~~~~~~~~t~s 77 (343)
T PRK06585 18 PKIRAVLLYGPDRGLVRERARRLAKSVVPDLDD------------------PFAVVRLDGDDL-D-ADPARLEDEANAIS 77 (343)
T ss_pred CCCeEEEEeCCchHHHHHHHHHHHHHhcCCCCC------------------CcceeeccHHHh-h-cCHHHHHHHHhCCC
Confidence 355799999999999888888888776432100 011333332100 0 01456778888889
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC---cchHHHH--ccceEEEecCCChhHHHHHHHHH
Q 036794 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD---ALPHIII--SRCQKFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d---kL~~aL~--SR~qvI~F~~p~~~EI~eiL~~i 595 (1152)
+++.+++|+|.+.+ ....+.|..+++.+++++++|+.+...+ ++...+. ..+..+.|.+++..++..|+..+
T Consensus 78 lF~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~~~~~~~~l~~~i~~~ 154 (343)
T PRK06585 78 LFGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPCYADDERDLARLIDDE 154 (343)
T ss_pred CCCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEecCCCCHHHHHHHHHHH
Confidence 99999999999654 3456689999999888888888776554 2344332 23457899999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---CCCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHH
Q 036794 596 ASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---QRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNL 672 (1152)
Q Consensus 596 akkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg---~~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L 672 (1152)
+++.|+.|+++|+++|++.++||++.+.|+|++++++. +.||.++|.++++...+.++|+++++++.+|..+|+..+
T Consensus 155 ~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~dai~~~~~~~a~~~l 234 (343)
T PRK06585 155 LAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAADAALAGDLAAFERAL 234 (343)
T ss_pred HHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999999999999999999999999999883 469999999999999999999999999999999999999
Q ss_pred HHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHH---------HHH-----hCCCCcccHHHHHHHHHHHHHHHH
Q 036794 673 RVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRK---------FFR-----RQPLSKEEMEKLRQALKTLSEAEK 738 (1152)
Q Consensus 673 ~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~---------~~~-----r~~ls~~s~~kL~qaL~~L~eaD~ 738 (1152)
+.|+.+|++|+.|++.|+++||+|+.++.....|..... ++. .+++.+|+.+.|.+++..|.++|.
T Consensus 235 ~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~ 314 (343)
T PRK06585 235 DRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSLERLLRALERLQAAEL 314 (343)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998766544433221 111 234569999999999999999999
Q ss_pred Hhcc-CCCHHHHHHHHHHHcCC
Q 036794 739 QLRM-SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 739 qLK~-s~dprl~LE~lLLkLa~ 759 (1152)
++|+ +.++.++||.+++++|.
T Consensus 315 ~lK~~~~~~~~~le~~i~~~~~ 336 (343)
T PRK06585 315 DCRRNPALADAIARRVLLSIAV 336 (343)
T ss_pred HHhcCCCcHHHHHHHHHHHHHH
Confidence 9998 55889999999999995
|
|
| >TIGR00678 holB DNA polymerase III, delta' subunit | Back alignment and domain information |
|---|
Probab=99.93 E-value=2e-25 Score=233.26 Aligned_cols=186 Identities=27% Similarity=0.520 Sum_probs=171.6
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC-CCCHHHH
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESI 509 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas-~~~vdeI 509 (1152)
+.|.+.+..++++++|||+||+|+|||++|+.+++.+.|.......||+.|..|..+..+.++|+..+...+ ..+++.+
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i 81 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQV 81 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHH
Confidence 467889999999999999999999999999999999999866677899999999999999999888876543 4678999
Q ss_pred HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHH
Q 036794 510 LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADII 589 (1152)
Q Consensus 510 reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~ 589 (1152)
+++++.+...|+.+.++||||||+|.|+..+++.|+++||+++.+++||++|+++.++.++|.+||+.+.|.+++.+++.
T Consensus 82 ~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~~~~~~ 161 (188)
T TIGR00678 82 RELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLSEEALL 161 (188)
T ss_pred HHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 590 YTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 590 eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
+||... | ++++++++|+..++|++|.+
T Consensus 162 ~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 162 QWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 999765 4 78999999999999999864
|
At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau. |
| >PRK05917 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.5e-24 Score=241.29 Aligned_cols=265 Identities=18% Similarity=0.219 Sum_probs=206.3
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC---C
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN---F 504 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~---~ 504 (1152)
...+.|.+++..++.+|+|||+||+|+||+++|..+|+.+.|...+ ..|..+..+.++|+..+.+.+. .
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~--------~~c~~~~~~~HPD~~~i~p~~~~~~I 75 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSP--------EAAYKISQKIHPDIHEFSPQGKGRLH 75 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCc--------cHHHHHhcCCCCCEEEEecCCCCCcC
Confidence 4567899999999999999999999999999999999999997421 2477788899999999866543 6
Q ss_pred CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCC
Q 036794 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 505 ~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~ 584 (1152)
++++++++.+.+...|+.+.++|+|||++|.|+.+++|+|||+|||||.+++||++|++++.+++||+|||+.+.|+++.
T Consensus 76 ~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~~~~~~ 155 (290)
T PRK05917 76 SIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIHIPMEE 155 (290)
T ss_pred cHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEEccchh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998861
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH--HHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLR--DAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR--~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
...++++.+..++..++|++. .+...++. . . +. ...
T Consensus 156 ---------------~~~i~~~~~~~l~~~~~g~~~~~~~~~~l~~------~-------------~-~~----~~~--- 193 (290)
T PRK05917 156 ---------------KTLVSKEDIAYLIGYAQGKESVTEVGQIVKG------S-------------A-DT----DKQ--- 193 (290)
T ss_pred ---------------ccCCCHHHHHHHHHHhCCChhHHHHHHHHhc------c-------------h-HH----HHH---
Confidence 124788999999999999886 11111111 0 0 00 000
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc-hhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD-RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g-~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
.+ .+....++..+..+|||++..+...... ....++.. .+..++...+..+++.+.++...++
T Consensus 194 --------~~------re~~~~~L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~--~l~~~~~~~l~~~i~~i~~a~~~l~ 257 (290)
T PRK05917 194 --------VL------RDKTKAMLEVLLQLFRDRFLLALKVPASALAYPDLLK--EILTLPVLPLEKVLSIIERAVQALD 257 (290)
T ss_pred --------HH------HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccHHHHH--HHHhcccccHHHHHHHHHHHHHHHH
Confidence 00 1234456778888899988765433221 11111111 1111223337889999999999999
Q ss_pred cCCCHHHHHHHHHHHcC
Q 036794 742 MSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 742 ~s~dprl~LE~lLLkLa 758 (1152)
...++++.||.++++|.
T Consensus 258 ~N~N~~l~le~l~l~l~ 274 (290)
T PRK05917 258 NSSSAPSCLEWVALQLW 274 (290)
T ss_pred hcCCHHHHHHHHHHHHH
Confidence 99999999999999987
|
|
| >PRK05574 holA DNA polymerase III subunit delta; Reviewed | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.7e-23 Score=234.83 Aligned_cols=305 Identities=21% Similarity=0.253 Sum_probs=243.7
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHH
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL 510 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIr 510 (1152)
..+...+..+ ..+.|||||+.=.-+...+..+.+.+..... ...++..++.. ..+ +.
T Consensus 6 ~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~~------------------~~~~~~~~d~~-~~~---~~ 62 (340)
T PRK05574 6 EQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQGF------------------DERNVFTFDGS-ETD---WD 62 (340)
T ss_pred HHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCCC------------------ceeeEEEeecC-CCC---HH
Confidence 3455566666 8889999998866666666666655432110 01123444432 122 45
Q ss_pred HHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhCCC--CEEEEEEcCCCC---cc---hHHHHccceEE
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDRAPR--RVVFILVSSSLD---AL---PHIIISRCQKF 578 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEepp~--~VifILaTN~~d---kL---~~aL~SR~qvI 578 (1152)
++++.+...|+++++++|+|++++.+... ....|..++ ++++ .++||+.++..+ ++ .+++.+++..+
T Consensus 63 ~l~~~~~t~~lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~~~~~~~ 141 (340)
T PRK05574 63 DVLEACQSLPLFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALKKKAVVV 141 (340)
T ss_pred HHHHHhhccCccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHHhCceEE
Confidence 66677778899999999999999998665 334455555 4343 566677766554 23 56788889999
Q ss_pred EecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHhccchhhHHHH
Q 036794 579 FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG--QRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 579 ~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg--~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.|++++..++..|+...++..|+.|+++++++|++..+||+..+.++|++++++. +.||.++|.+++....+.++|++
T Consensus 142 ~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~~~~f~l 221 (340)
T PRK05574 142 EAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSARFDVFDL 221 (340)
T ss_pred EcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999998873 34999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHH
Q 036794 657 LDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEME 724 (1152)
Q Consensus 657 ldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~ 724 (1152)
+++++.+|...|++.++.|+.+|.+|+.|++.|.+++++|+.++.....+.....++. .+.+.+|+.+
T Consensus 222 ~dai~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~s~~ 301 (340)
T PRK05574 222 VDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRALQRLSLK 301 (340)
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999999999999999998766544443332222 2356699999
Q ss_pred HHHHHHHHHHHHHHHhccC--CCHHHHHHHHHHHcCC
Q 036794 725 KLRQALKTLSEAEKQLRMS--NDKLTWLTAALLQLAP 759 (1152)
Q Consensus 725 kL~qaL~~L~eaD~qLK~s--~dprl~LE~lLLkLa~ 759 (1152)
.|.+++..|.++|.++|++ .++++.||.++++||.
T Consensus 302 ~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 302 QLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999997 5999999999999995
|
|
| >KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.9e-24 Score=231.26 Aligned_cols=319 Identities=21% Similarity=0.319 Sum_probs=244.9
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--------CCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--------KPCGFC 481 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--------epcg~c 481 (1152)
.|.+||||++|+.++++++....|+.....+.+|| +|||||+|+||-|.+.++.+++.....+.- .|-+.-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PH-ll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk 80 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPH-LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK 80 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCe-EEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce
Confidence 69999999999999999999999999888888887 899999999999999999999877543321 111110
Q ss_pred CccccccCCCccceEEeCCC--CCCCHHHHHHHHHHHhhCC-----CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 482 NSCISHDRGKSRNIKEVGPV--GNFDFESILDLLDNMVTSR-----PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRR 554 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaa--s~~~vdeIreLle~a~~~P-----~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~ 554 (1152)
..+..-++....|+.|. ++.+.--+.+++.++.... ....++||+|-|+|.|+.++|.+|.+++|.+..+
T Consensus 81 ---lEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~ 157 (351)
T KOG2035|consen 81 ---LEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSN 157 (351)
T ss_pred ---EEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcC
Confidence 12222233445677664 3445445777887764322 1235899999999999999999999999999999
Q ss_pred EEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 036794 555 VVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ 634 (1152)
Q Consensus 555 VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~ 634 (1152)
+.+|++||...++.++|+|||-.++++.|+++|+...|..+++++|+.++.+.+..|++.++||+|.++=+||.+.+...
T Consensus 158 ~RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n~ 237 (351)
T KOG2035|consen 158 CRLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNNE 237 (351)
T ss_pred ceEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999876533
Q ss_pred CCCHHHHHHHHhccchhhHHHHHHHHHcCCHH----HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHH
Q 036794 635 RISVPLVQELVGLISDEKLVDLLDLALSADTV----NTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRR 710 (1152)
Q Consensus 635 ~IT~EdV~elVg~v~ee~ifdLldAils~d~~----~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~ 710 (1152)
..+.+- ..+...--+..+.++...++..... +.-..|++|+..+..|-.|+..|..++-.
T Consensus 238 ~~~a~~-~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~--------------- 301 (351)
T KOG2035|consen 238 PFTANS-QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL--------------- 301 (351)
T ss_pred cccccC-CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh---------------
Confidence 221110 0011111122333444444444332 34468899999999999999988876432
Q ss_pred HHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHc
Q 036794 711 KFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757 (1152)
Q Consensus 711 ~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkL 757 (1152)
+.+.+--...++..+..|.+++.|...-+.||.|+.++
T Consensus 302 ---------~~d~~~k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~f 339 (351)
T KOG2035|consen 302 ---------KCDTQLKLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKF 339 (351)
T ss_pred ---------cCCchhHHHHHHHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence 23333344567788889999999999999999998876
|
|
| >COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.2e-24 Score=240.79 Aligned_cols=228 Identities=28% Similarity=0.441 Sum_probs=191.8
Q ss_pred CcccCcHHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 421 RDLVGQNLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
++++|++.++..+..++. .++.+|+|||+||||+|||++|.++|+.+.|.......+|..|..|..+..+.++++.+++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 368899998888888887 6778999999999999999999999999999998888999999999999999999999999
Q ss_pred CCCCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccc
Q 036794 500 PVGNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRC 575 (1152)
Q Consensus 500 aas~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~ 575 (1152)
+..... .+.++++.+.....+..++++||||||+|.|+.+++++|++++|+|+.+++||++||++.++.++|+|||
T Consensus 81 ~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~tI~SRc 160 (325)
T COG0470 81 PSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPTIRSRC 160 (325)
T ss_pred ccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccchhhhcc
Confidence 876644 6788888888888887789999999999999999999999999999999999999999999999999999
Q ss_pred eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchh----
Q 036794 576 QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDE---- 651 (1152)
Q Consensus 576 qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee---- 651 (1152)
+.+.|++++.... ++..+ ++++..++....||+|.++|.++.++.. .+....+.+++......
T Consensus 161 ~~i~f~~~~~~~~------i~~~e-----~~~l~~i~~~~~gd~r~~i~~lq~~~~~--~~~~~~~~~~~~~~~~~~~~~ 227 (325)
T COG0470 161 QRIRFKPPSRLEA------IAWLE-----DQGLEEIAAVAEGDARKAINPLQALAAL--EIGEESIYEALLLALPESLAQ 227 (325)
T ss_pred eeeecCCchHHHH------HHHhh-----ccchhHHHHHHHHHHHcCCCHHHHHHHh--cccHHHHHHHHHhhChhhccc
Confidence 9999998544333 33333 6788889999999999999999998776 33444444444433333
Q ss_pred -hHHHHHHHHH
Q 036794 652 -KLVDLLDLAL 661 (1152)
Q Consensus 652 -~ifdLldAil 661 (1152)
...+++..+.
T Consensus 228 ~~~~~~~~~~~ 238 (325)
T COG0470 228 LAALELLKLAE 238 (325)
T ss_pred ccHHHHHHHHH
Confidence 5555555443
|
|
| >PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.2e-25 Score=227.35 Aligned_cols=159 Identities=27% Similarity=0.551 Sum_probs=137.3
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC-
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN- 503 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~- 503 (1152)
||+.+++.|.+++..++++|+|||+||+|+||+++|+++|+.+.|...... +|+.|..|..+..+.++|+..+.+...
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~-~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNED-PCGECRSCRRIEEGNHPDFIIIKPDKKK 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT---SSSHHHHHHHTT-CTTEEEEETTTSS
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCC-CCCCCHHHHHHHhccCcceEEEeccccc
Confidence 899999999999999999999999999999999999999999999876655 999999999999999999999987654
Q ss_pred --CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEec
Q 036794 504 --FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581 (1152)
Q Consensus 504 --~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~ 581 (1152)
.++++++++.+.+...|..+.++|+||||+|.|+.+++|+||++||+||.+++|||+|+++++++++|+|||+.|.|+
T Consensus 80 ~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~~i~~~ 159 (162)
T PF13177_consen 80 KSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQVIRFR 159 (162)
T ss_dssp SSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSEEEEE-
T ss_pred chhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhceEEecC
Confidence 789999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q 036794 582 KMK 584 (1152)
Q Consensus 582 ~p~ 584 (1152)
+++
T Consensus 160 ~ls 162 (162)
T PF13177_consen 160 PLS 162 (162)
T ss_dssp ---
T ss_pred CCC
Confidence 864
|
... |
| >PRK08487 DNA polymerase III subunit delta; Validated | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.5e-23 Score=235.09 Aligned_cols=300 Identities=16% Similarity=0.204 Sum_probs=240.9
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHH
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL 510 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIr 510 (1152)
..|...++.+.++++|||||+.=.-...++..|.+.+...... .+ +..+ ..+ +.
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~~-------------------~~-~~~~---~~~---~~ 57 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENEL-------------------KT-LYFD---EYD---FE 57 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchHh-------------------hh-hchh---hcc---HH
Confidence 4677788889999999999998888888888777665432100 00 1111 123 35
Q ss_pred HHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc---chHHHHcc--ceEEEecCCCh
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA---LPHIIISR--CQKFFFPKMKD 585 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk---L~~aL~SR--~qvI~F~~p~~ 585 (1152)
++++.+...|+++++++|+|.+...+.......|..+++.+++.+++|++....++ +...+... +..+.|.+++.
T Consensus 58 ~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~~~~~~ 137 (328)
T PRK08487 58 QAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRFFKPNA 137 (328)
T ss_pred HHHHHHhcccccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEeeCCCH
Confidence 67777778899999999999988777766778999999998877777776555542 22323222 55799999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcCCH
Q 036794 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADT 665 (1152)
Q Consensus 586 ~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~d~ 665 (1152)
.++..|+...+++.|+.|+++|+++|+.++++|+..+.++|++|++|.+.||.++|.+++....+.++|+++++++.++
T Consensus 138 ~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~~It~edV~~~v~~~~e~~vF~l~dai~~g~- 216 (328)
T PRK08487 138 REALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNEPITLKDIQELVFGLGSVSFEDFFEKLLNKK- 216 (328)
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcCCCCHHHHHHHhcccccccHHHHHHHHHCCC-
Confidence 9999999999999999999999999999999999999999999999988999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhh-c---------chhHHHHHH---hCCCCcccHHHHHHHHHH
Q 036794 666 VNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT-K---------DRHRRKFFR---RQPLSKEEMEKLRQALKT 732 (1152)
Q Consensus 666 ~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~-~---------g~~~~~~~~---r~~ls~~s~~kL~qaL~~ 732 (1152)
.|+..++.|+..|++|+.|++.|.++|+.|+.++.... . +.....|+. .+++++|+.++|.+++..
T Consensus 217 -~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L~~~l~~ 295 (328)
T PRK08487 217 -DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQYKEIFEL 295 (328)
T ss_pred -cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 58899999999999999999999999999987543221 1 111112222 345779999999999999
Q ss_pred HHHHHHHhccC--CCHHHHHHHHHHHcC
Q 036794 733 LSEAEKQLRMS--NDKLTWLTAALLQLA 758 (1152)
Q Consensus 733 L~eaD~qLK~s--~dprl~LE~lLLkLa 758 (1152)
|.++|.++|++ .+..+.+|++++.+-
T Consensus 296 L~e~D~~lK~g~~~~~~~~~~~~~~~~~ 323 (328)
T PRK08487 296 LLEWELELKTGQKIDKNLFLLSTLIKIQ 323 (328)
T ss_pred HHHHHHHHHcCCCccHHHHHHHHHHHHH
Confidence 99999999996 577888898888764
|
|
| >KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=237.61 Aligned_cols=262 Identities=20% Similarity=0.316 Sum_probs=215.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHH---HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVA---QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~---q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
.++||.++.||++++|+|||++++ ..|.+.|++++++. ++|+||||||||++|+.|+.......
T Consensus 124 qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipS-mIlWGppG~GKTtlArlia~tsk~~S------------ 190 (554)
T KOG2028|consen 124 QHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPS-MILWGPPGTGKTTLARLIASTSKKHS------------ 190 (554)
T ss_pred ccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCc-eEEecCCCCchHHHHHHHHhhcCCCc------------
Confidence 478999999999999999999887 46889999999986 78999999999999999987654321
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC-CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS-RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~-P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..++++.+ .+.+..+++++++..... .+..++.|+||||||.+....|..||..+|. ..+.||.+|+
T Consensus 191 ---------yrfvelSA-t~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~--G~I~lIGATT 258 (554)
T KOG2028|consen 191 ---------YRFVELSA-TNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVEN--GDITLIGATT 258 (554)
T ss_pred ---------eEEEEEec-cccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceecc--CceEEEeccc
Confidence 12555544 345678899999986533 3446778999999999999999999999997 7899999987
Q ss_pred CCC--cchHHHHccceEEEecCCChhHHHHHHHHHHH------Hc--C-----CCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 563 SLD--ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS------KE--G-----IEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 563 ~~d--kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak------ke--G-----l~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
+.. .+..+|++||.+|.+++++.+.+..+|.+-.. +. + +.+++.++++|+..+.||.|.++|.|+
T Consensus 259 ENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Le 338 (554)
T KOG2028|consen 259 ENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALE 338 (554)
T ss_pred CCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHH
Confidence 543 58889999999999999999999998887443 11 1 247889999999999999999999999
Q ss_pred HHH-Hh---CC-----CCCHHHHHHHHh----------ccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHH
Q 036794 628 QLS-LL---GQ-----RISVPLVQELVG----------LISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQ 688 (1152)
Q Consensus 628 kLs-Ll---g~-----~IT~EdV~elVg----------~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~ 688 (1152)
-.. .. .+ .++.+||++.+. ...-+.|..+...+..+|...++.+|.+|++.|+||+.+...
T Consensus 339 ms~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdPLYVARR 418 (554)
T KOG2028|consen 339 MSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDPLYVARR 418 (554)
T ss_pred HHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCcHHHHHH
Confidence 862 21 22 489999999884 334456777777778889999999999999999999999988
Q ss_pred HHHHH
Q 036794 689 LATVI 693 (1152)
Q Consensus 689 La~qi 693 (1152)
|+++.
T Consensus 419 lvR~A 423 (554)
T KOG2028|consen 419 LVRFA 423 (554)
T ss_pred HHHHh
Confidence 88753
|
|
| >TIGR01128 holA DNA polymerase III, delta subunit | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.4e-23 Score=227.84 Aligned_cols=247 Identities=24% Similarity=0.294 Sum_probs=217.2
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHhhCCCCEEEEEEcCCCCc---chHHHH--ccceEEEecCCCh
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLSP-DSWSAISKVVDRAPRRVVFILVSSSLDA---LPHIII--SRCQKFFFPKMKD 585 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls~-eaqnaLLklLEepp~~VifILaTN~~dk---L~~aL~--SR~qvI~F~~p~~ 585 (1152)
+++.+...|+++.+++|+|++++.+.. ...+.|++++++++.+++||+.++.++. +...+. ++|..+.|.+++.
T Consensus 34 l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~k~~~~~~~~~~i~~~~~~~ 113 (302)
T TIGR01128 34 LLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLTKWLKALKNAQIVECKTPKE 113 (302)
T ss_pred HHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHHHHHHHhcCeeEEEecCCCH
Confidence 677777889999999999999999864 5678999999999999999999886653 222333 4999999999999
Q ss_pred hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHhccchhhHHHHHHHHHcC
Q 036794 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEKLVDLLDLALSA 663 (1152)
Q Consensus 586 ~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~elVg~v~ee~ifdLldAils~ 663 (1152)
.++..|+...++++|+.|+++++++|+...+||++.+.|+|++++++ ++.||.++|..++....+.++|+++++++.+
T Consensus 114 ~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~~~~~~~~~if~l~dal~~~ 193 (302)
T TIGR01128 114 QELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEAVSDSARFNVFDLTDALLEG 193 (302)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999888 4579999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHHH
Q 036794 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQALK 731 (1152)
Q Consensus 664 d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL~ 731 (1152)
|...++..++.|+..|++|+.|+..|.+++++|+.++.....+.....+++ .+++.+|+.+.|.+++.
T Consensus 194 ~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~~L~~~l~ 273 (302)
T TIGR01128 194 KAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRKLALKALRRLSLAKLEQALQ 273 (302)
T ss_pred CHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 999999999999999999999999999999999998765444422221111 34567899999999999
Q ss_pred HHHHHHHHhcc--CCCHHHHHHHHHHHcC
Q 036794 732 TLSEAEKQLRM--SNDKLTWLTAALLQLA 758 (1152)
Q Consensus 732 ~L~eaD~qLK~--s~dprl~LE~lLLkLa 758 (1152)
.|.++|.++|+ ..++++.||.++++||
T Consensus 274 ~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 274 ELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 99999999993 7799999999999998
|
subunit around DNA forming a DNA sliding clamp. |
| >KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.2e-23 Score=231.82 Aligned_cols=312 Identities=16% Similarity=0.213 Sum_probs=244.1
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
....++|.+||||.++.++++|++++.++.+....++.+| .|||||||||||+...+.|+.+.|.....
T Consensus 25 ~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh-~L~YgPPGtGktsti~a~a~~ly~~~~~~---------- 93 (360)
T KOG0990|consen 25 PQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPH-LLFYGPPGTGKTSTILANARDFYSPHPTT---------- 93 (360)
T ss_pred cccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCc-ccccCCCCCCCCCchhhhhhhhcCCCCch----------
Confidence 4568899999999999999999999999999988888886 78999999999999999999998752111
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHH---HhhC-CC--CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEE
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDN---MVTS-RP--PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~---a~~~-P~--~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifI 558 (1152)
.-+.++++....+++-+++-+.. .... -+ .+..++||+||+|.|+.++||+|.++++....+++|+
T Consensus 94 --------~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~rF~ 165 (360)
T KOG0990|consen 94 --------SMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTRFA 165 (360)
T ss_pred --------hHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceEEE
Confidence 01333333333444433332222 2211 11 2367999999999999999999999999999999999
Q ss_pred EEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC----
Q 036794 559 LVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ---- 634 (1152)
Q Consensus 559 LaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~---- 634 (1152)
+++|.+.++.+++++||..++|.+++...+..++..+++.+.+.++++....++..+-||+|.+.|.|+-...+..
T Consensus 166 ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~~e 245 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMERKE 245 (360)
T ss_pred EeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999866532
Q ss_pred -CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHH
Q 036794 635 -RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVI-METGVEPLALMSQLATVITDILAGSYDFTKDRHRRKF 712 (1152)
Q Consensus 635 -~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~L-L~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~ 712 (1152)
.++.++|....+.....++-++++.++.+....+..-+..+ ...|.+-..++..|..++..+..
T Consensus 246 ~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~~~~-------------- 311 (360)
T KOG0990|consen 246 LNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAIVIS-------------- 311 (360)
T ss_pred CCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHhc--------------
Confidence 36667799999998888999999999999887777666666 34455666666666555543211
Q ss_pred HHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 713 FRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 713 ~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
...-...++..+.++++.+-.+.+..+.|..++-.+.
T Consensus 312 ---------~~~~~~~I~~~l~~Ie~~ls~g~~~~~ql~aii~~~~ 348 (360)
T KOG0990|consen 312 ---------KTPVEGHILYQLADIEERLSKGCMQKEQLKAIIKNFA 348 (360)
T ss_pred ---------chHHHHHHHHhHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 1133455666777777777776666666665554443
|
|
| >PRK07132 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-22 Score=220.89 Aligned_cols=289 Identities=17% Similarity=0.187 Sum_probs=210.9
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ceEEeCC-CCCC
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NIKEVGP-VGNF 504 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dviEIda-as~~ 504 (1152)
..+++.|+++++.++++|+|||+|++|+||+.+|+.|++.+.|..... ...+.++ ++..++. ....
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~------------~~~~~~p~n~~~~d~~g~~i 69 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN------------LNEQELPANIILFDIFDKDL 69 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC------------CCCCCCCcceEEeccCCCcC
Confidence 357889999999999999999999999999999999999999864211 1111222 3445542 2347
Q ss_pred CHHHHHHHHHHHhhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 505 DFESILDLLDNMVTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 505 ~vdeIreLle~a~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
++++++++++.+...|+. ++++|||||+++.|+..++|+|+++||+||.+++||++|++++++.++|+|||+++.|.++
T Consensus 70 ~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~~f~~l 149 (299)
T PRK07132 70 SKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVFNVKEP 149 (299)
T ss_pred CHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEEECCCC
Confidence 789999999999888866 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHHcC
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSA 663 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAils~ 663 (1152)
+..++..+|... + ++++....++..++ ++..|+..+..- ..+... .+.+++..+..
T Consensus 150 ~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~-------~~~~~~---------~~~~~l~~~~~- 205 (299)
T PRK07132 150 DQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKE-------SENLLK---------KFEEALNKSLK- 205 (299)
T ss_pred CHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcC-------CHHHHH---------HHHHHHHHhhh-
Confidence 999999888642 3 67777777777776 588887775431 112211 11122222222
Q ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhH-H-HHHHhCCCCcccHHHHHHHHHHHHHHHHHhc
Q 036794 664 DTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHR-R-KFFRRQPLSKEEMEKLRQALKTLSEAEKQLR 741 (1152)
Q Consensus 664 d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~-~-~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK 741 (1152)
+....+.....++. .++...++..+..++||++..+......... . ...+.. . ++...| +..+.++...|+
T Consensus 206 ~~~~l~~~~~~~~~-ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~~~~i~~~--~-~s~~~l---i~~i~~~~~~L~ 278 (299)
T PRK07132 206 EKYELILFLNKKLT-KENALFLLKLLKFFFKSIFANKKKKNPKNIKVAFSKKKKF--K-IEFFEL---ITIIDEFLNSLE 278 (299)
T ss_pred hHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHhccCChHhHhhHHHHHHHH--h-cCHHHH---HHHHHHHHHHHH
Confidence 22222222233332 3445667888888999999876543322111 1 111111 1 555555 888899999999
Q ss_pred cCCCHHHHHHHHHHHcC
Q 036794 742 MSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 742 ~s~dprl~LE~lLLkLa 758 (1152)
...|+.+.+|.++++|.
T Consensus 279 ~N~N~~l~~e~lll~l~ 295 (299)
T PRK07132 279 TNENFNLQKQAFLVKIY 295 (299)
T ss_pred HhcCHHHHHHHHHHHHH
Confidence 99999999999999985
|
|
| >PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.8e-23 Score=219.89 Aligned_cols=197 Identities=21% Similarity=0.271 Sum_probs=143.3
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
....++.+++||++|+|+|||++++..++-.++. +..-..+|||||||+||||+|++||+++++..
T Consensus 9 ~~~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~---------- 78 (233)
T PF05496_consen 9 EEEAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGVNF---------- 78 (233)
T ss_dssp ---S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT--E----------
T ss_pred CcchhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCCCe----------
Confidence 3456888999999999999999999988765543 33334689999999999999999999988652
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC---------
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--------- 552 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--------- 552 (1152)
..+.+..-....++..++..+ ..+.|+||||||.|++..++.|+.+||+..
T Consensus 79 --------------~~~sg~~i~k~~dl~~il~~l------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~ 138 (233)
T PF05496_consen 79 --------------KITSGPAIEKAGDLAAILTNL------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGP 138 (233)
T ss_dssp --------------EEEECCC--SCHHHHHHHHT--------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSS
T ss_pred --------------EeccchhhhhHHHHHHHHHhc------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEecccc
Confidence 222221112335555565554 456899999999999999999999999821
Q ss_pred ---------CCEEEEEEcCCCCcchHHHHccceEE-EecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 ---------RRVVFILVSSSLDALPHIIISRCQKF-FFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ---------~~VifILaTN~~dkL~~aL~SR~qvI-~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
+...+|.+|+....+..+|++|+.++ .+..++.+++..++.+-+...+++|+++++..||.++.|..|-|
T Consensus 139 ~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtPRiA 218 (233)
T PF05496_consen 139 NARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTPRIA 218 (233)
T ss_dssp S-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSHHHH
T ss_pred ccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCChHHH
Confidence 34568999999999999999999974 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 036794 623 EMTLEQLSLL 632 (1152)
Q Consensus 623 in~LEkLsLl 632 (1152)
.++|.++-.+
T Consensus 219 nrll~rvrD~ 228 (233)
T PF05496_consen 219 NRLLRRVRDF 228 (233)
T ss_dssp HHHHHHHCCC
T ss_pred HHHHHHHHHH
Confidence 9999987544
|
Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B. |
| >PRK05818 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.9e-22 Score=219.34 Aligned_cols=230 Identities=16% Similarity=0.241 Sum_probs=179.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC-CCCHHHHHHHHHHHhhC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESILDLLDNMVTS 519 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas-~~~vdeIreLle~a~~~ 519 (1152)
..+|+|||+||+|+||..+|.++|+.+.|... ..|||.|..|..+..+.++|+..+.+.. ..++++++++.+.+...
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~--~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~ 82 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA--NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRP 82 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC--CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccC
Confidence 46789999999999999999999999999863 3699999999999999999999987654 47899999999998877
Q ss_pred CCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC----------ChhHH
Q 036794 520 RPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM----------KDADI 588 (1152)
Q Consensus 520 P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p----------~~~EI 588 (1152)
++. ++++|+|||++|+|+.++.|+||++|||||.+++||++|++++.+++||+|||+.+.|+++ ++.++
T Consensus 83 s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~~~~~i 162 (261)
T PRK05818 83 SVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVESNDRYF 162 (261)
T ss_pred chhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhcccccccChHHH
Confidence 755 5799999999999999999999999999999999999999999999999999999999888 44455
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHHHhccchhhHHHHHHHHH-cCCHH
Q 036794 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQELVGLISDEKLVDLLDLAL-SADTV 666 (1152)
Q Consensus 589 ~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~elVg~v~ee~ifdLldAil-s~d~~ 666 (1152)
.+.+.. ..+ +++ .++...+|++.++...++.+.... .-+++.++.........+.+-.++..+. .++++
T Consensus 163 ~~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l~~~~~~~ 233 (261)
T PRK05818 163 QYILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLLIPTVDPE 233 (261)
T ss_pred HHHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCch
Confidence 554432 222 444 566678999999999999652111 1255556666666655555555555443 34555
Q ss_pred HHHHHHHHHHHhCCC
Q 036794 667 NTVKNLRVIMETGVE 681 (1152)
Q Consensus 667 ~ALk~L~~LL~~G~d 681 (1152)
+-.++++-+-.-..+
T Consensus 234 ~k~~~~~~~~~l~~n 248 (261)
T PRK05818 234 KKSKLYNLLSNLKYN 248 (261)
T ss_pred HHHHHHHHHHhcCCC
Confidence 544455444333333
|
|
| >TIGR02902 spore_lonB ATP-dependent protease LonB | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.6e-23 Score=246.95 Aligned_cols=267 Identities=21% Similarity=0.303 Sum_probs=189.2
Q ss_pred eeeehhhhhccccchhhhhcc-ccccccccccccc-ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Q 036794 372 LGIFADHLLKHAVDSDLASEG-RSGGQQNLGDNRN-GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFY 449 (1152)
Q Consensus 372 iGi~~d~Llk~~~~~dl~se~-rs~~~~~l~~~~~-~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~ 449 (1152)
+|+||+.+++++...+...+. ..++..++.+.+. .+.++|.+||||.+|++++||+..++.|..++... .+..+||+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~-~~~~vLi~ 92 (531)
T TIGR02902 14 IGLYFFNALKNQQTNKITIDKESKKELEKLNKMRAIRLTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGP-NPQHVIIY 92 (531)
T ss_pred HHHHHHHHHHhhcCCeeeeehhhhHHHHHHHHhhhhhhcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCC-CCceEEEE
Confidence 489999999998887665442 2223444444444 45889999999999999999999999999876544 34568999
Q ss_pred cCCCchHHHHHHHHHHHHcccCC-CC--CCCCCCCCcccc--ccCCCcc-ceEE-e-CC----CCCCCHHHH----HHHH
Q 036794 450 GPHGTGKTSCARIFARALNCQSL-EQ--PKPCGFCNSCIS--HDRGKSR-NIKE-V-GP----VGNFDFESI----LDLL 513 (1152)
Q Consensus 450 GPpGTGKTtlARaLAkeL~~~~~-e~--~epcg~c~~c~~--i~~g~~~-dviE-I-da----as~~~vdeI----reLl 513 (1152)
||+|||||++|+++++....... .. ..++.. ..|.. +...... .++. + ++ .+.++...+ ..++
T Consensus 93 Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~-id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l 171 (531)
T TIGR02902 93 GPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVE-IDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAV 171 (531)
T ss_pred CCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEE-EccccccCCccccchhhcCCcccchhccccccccCCcccccCchh
Confidence 99999999999999987543211 11 112211 11211 1100000 0000 0 00 000000000 0001
Q ss_pred HHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC----------------------------CCCEEEEEEcC-CC
Q 036794 514 DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA----------------------------PRRVVFILVSS-SL 564 (1152)
Q Consensus 514 e~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep----------------------------p~~VifILaTN-~~ 564 (1152)
. .+.+++|||||++.|+...|+.|+++|++. +.++++|++|+ ++
T Consensus 172 ~-------~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p 244 (531)
T TIGR02902 172 T-------RAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP 244 (531)
T ss_pred h-------ccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc
Confidence 1 245689999999999999999999999862 23567777764 67
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---C--CCCHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG---Q--RISVP 639 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg---~--~IT~E 639 (1152)
+.+++++++||..+.|++++.+++..+++..+++.++.+++++++.|+.++. |.|++.|+++.++.++ + .|+.+
T Consensus 245 ~~L~paLrsR~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~ 323 (531)
T TIGR02902 245 EEIPPALRSRCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAE 323 (531)
T ss_pred ccCChHHhhhhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHH
Confidence 8899999999999999999999999999999999999999999999998864 8999999999986442 2 49999
Q ss_pred HHHHHHhcc
Q 036794 640 LVQELVGLI 648 (1152)
Q Consensus 640 dV~elVg~v 648 (1152)
||.+++...
T Consensus 324 dI~~vl~~~ 332 (531)
T TIGR02902 324 DIEWVAENG 332 (531)
T ss_pred HHHHHhCCc
Confidence 999998653
|
Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis. |
| >PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed | Back alignment and domain information |
|---|
Probab=99.88 E-value=5e-21 Score=217.21 Aligned_cols=209 Identities=18% Similarity=0.225 Sum_probs=168.1
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..|..+|||.+|++++|++.+++.|..++.. +...+.+|||||||||||++|+++|++++....
T Consensus 13 ~~~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~------------ 80 (328)
T PRK00080 13 DEIERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIR------------ 80 (328)
T ss_pred chhhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeE------------
Confidence 4567899999999999999999998877753 444567999999999999999999999875311
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC------------
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP------------ 552 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp------------ 552 (1152)
.+..........+..++..+ ..+.||||||+|.++...++.|+.++++..
T Consensus 81 ------------~~~~~~~~~~~~l~~~l~~l------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~ 142 (328)
T PRK00080 81 ------------ITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR 142 (328)
T ss_pred ------------EEecccccChHHHHHHHHhc------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc
Confidence 11100001123344444433 456899999999999888888888887632
Q ss_pred ------CCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 036794 553 ------RRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625 (1152)
Q Consensus 553 ------~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~ 625 (1152)
+.+.+|++|+.+..+.++|++||. .+.|.+++.+++.++|...+...++.++++++..|+..++|++|.+.+.
T Consensus 143 ~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a~~~ 222 (328)
T PRK00080 143 SIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIANRL 222 (328)
T ss_pred ceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHHHHH
Confidence 346789999999999999999985 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 626 LEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 626 LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
|+++..+ .+.|+.+++..++..
T Consensus 223 l~~~~~~a~~~~~~~I~~~~v~~~l~~ 249 (328)
T PRK00080 223 LRRVRDFAQVKGDGVITKEIADKALDM 249 (328)
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 9986433 246999999988854
|
|
| >COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.6e-20 Score=211.15 Aligned_cols=305 Identities=19% Similarity=0.290 Sum_probs=243.2
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHH
Q 036794 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511 (1152)
Q Consensus 432 ~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIre 511 (1152)
.+...+..+...++|||||+.=.-....+..+.+...+...... ... ......++. .
T Consensus 5 ~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~~~~-------------------~~~-~~~~~~~~~---~ 61 (334)
T COG1466 5 ELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGFDEN-------------------YSF-FDDSELDWA---D 61 (334)
T ss_pred HHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccchhhH-------------------Hhh-cccccCCHH---H
Confidence 34556666668889999999877777777777776663211110 000 011223343 4
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhCC-CCEEEEEEcCCCCc---chHHHHcc--ceEEEecCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLS-PDSWSAISKVVDRAP-RRVVFILVSSSLDA---LPHIIISR--CQKFFFPKMK 584 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls-~eaqnaLLklLEepp-~~VifILaTN~~dk---L~~aL~SR--~qvI~F~~p~ 584 (1152)
+++.+...|+++..++|+|....... .+....+...+..+| .+++|++..+..++ +.+.+..- +.++.+.+++
T Consensus 62 ~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~~~~~~~ 141 (334)
T COG1466 62 LLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVVECKPLD 141 (334)
T ss_pred HHHHhhccccccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceEecCCCC
Confidence 55666667888999999999988876 445556777777777 78888887776653 33333222 6689999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC--CCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG--QRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg--~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
..++..|+...+++.|+.++++|+++|+...+||+..+.++|++++++. +.||.++|..++....+.++|+++++++.
T Consensus 142 ~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l~dail~ 221 (334)
T COG1466 142 EAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDLADALLK 221 (334)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHHHHHHHC
Confidence 9999999999999999999999999999999999999999999999884 36999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHH
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQAL 730 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL 730 (1152)
+++.+|+..++.|+.+|++|+.|++.|.++|+.++..+.....+......+. .+++.+++.+.|.+++
T Consensus 222 g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~~l~~~l 301 (334)
T COG1466 222 GDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLKQLLKAL 301 (334)
T ss_pred CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHHHHHHHH
Confidence 9999999999999999999999999999999988888877777664443332 2234469999999999
Q ss_pred HHHHHHHHHhccCC-CHHHHHHHHHHHcCC
Q 036794 731 KTLSEAEKQLRMSN-DKLTWLTAALLQLAP 759 (1152)
Q Consensus 731 ~~L~eaD~qLK~s~-dprl~LE~lLLkLa~ 759 (1152)
+.|.++|.++|++. ++...++.+|+.++.
T Consensus 302 ~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~ 331 (334)
T COG1466 302 RLLAQLDYQIKTGYGDPVWALELFLLRLLE 331 (334)
T ss_pred HHHHHHHHHHhcCCccchHHHHHHHHHHhh
Confidence 99999999999955 899999999998874
|
|
| >TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.7e-19 Score=201.60 Aligned_cols=200 Identities=18% Similarity=0.216 Sum_probs=158.2
Q ss_pred CCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
++|++|+||+++++.|..++.. ......+||+||||||||++|+++|+++++..
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~---------------------- 58 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVNL---------------------- 58 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCE----------------------
Confidence 4699999999999999988864 23334589999999999999999999986431
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC------------------CCE
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP------------------RRV 555 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp------------------~~V 555 (1152)
..+..........+...+..+ ....+|||||+|.++...++.|+.++++.. ..+
T Consensus 59 --~~~~~~~~~~~~~l~~~l~~~------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 130 (305)
T TIGR00635 59 --KITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPF 130 (305)
T ss_pred --EEeccchhcCchhHHHHHHhc------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCe
Confidence 111111111223344444433 345799999999999999889988887422 347
Q ss_pred EEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--
Q 036794 556 VFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-- 632 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-- 632 (1152)
.+|++|+.+..+.+++++||. .+.|.+++.+++.+++...+...++.++++++..|+..++|++|.+.+.++.+..+
T Consensus 131 ~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~~~~a~ 210 (305)
T TIGR00635 131 TLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRVRDFAQ 210 (305)
T ss_pred EEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHHHHHHH
Confidence 889999999889999999996 57999999999999999999999999999999999999999999999999886433
Q ss_pred ---CCCCCHHHHHHHHhc
Q 036794 633 ---GQRISVPLVQELVGL 647 (1152)
Q Consensus 633 ---g~~IT~EdV~elVg~ 647 (1152)
...|+.+.|.+++..
T Consensus 211 ~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 211 VRGQKIINRDIALKALEM 228 (305)
T ss_pred HcCCCCcCHHHHHHHHHH
Confidence 235999999888765
|
RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions. |
| >COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.5e-19 Score=193.44 Aligned_cols=207 Identities=20% Similarity=0.244 Sum_probs=166.3
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.....||++|+|+|||++++..|.-.|+. +...-++|||||||.||||+|+++|++++...
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~--------------- 80 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL--------------- 80 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe---------------
Confidence 44568999999999999999988866654 33334689999999999999999999998542
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--------------
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-------------- 552 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-------------- 552 (1152)
....+..-....++..++..+ ..+.|+||||||.+++.+.+.|...||++.
T Consensus 81 ---------k~tsGp~leK~gDlaaiLt~L------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 81 ---------KITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred ---------EecccccccChhhHHHHHhcC------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceE
Confidence 111111112344566666654 566899999999999999999999999822
Q ss_pred ----CCEEEEEEcCCCCcchHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 553 ----RRVVFILVSSSLDALPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 553 ----~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
+...+|.+|+....+..+|+.||.+ .++.-++.+|+..++.+-+...++.+++++...||.++.|-.|-|..+|.
T Consensus 146 ~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIAnRLLr 225 (332)
T COG2255 146 RLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIANRLLR 225 (332)
T ss_pred eccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHHHHHHH
Confidence 4556899999999999999999984 77888999999999999999999999999999999999999999999998
Q ss_pred HHHHh-----CCCCCHHHHHHHHhc
Q 036794 628 QLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 628 kLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+.--+ .+.|+.+.+.+++..
T Consensus 226 RVRDfa~V~~~~~I~~~ia~~aL~~ 250 (332)
T COG2255 226 RVRDFAQVKGDGDIDRDIADKALKM 250 (332)
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHH
Confidence 87443 345777766666543
|
|
| >KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.3e-19 Score=211.78 Aligned_cols=230 Identities=19% Similarity=0.241 Sum_probs=181.3
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC---------------------------------CcEEEEEcCCCc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV---------------------------------GLLYVFYGPHGT 454 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri---------------------------------~~~yLL~GPpGT 454 (1152)
...|++||+|+.|.||+|.+.+-+.+..|++.+.. ...+|||||||.
T Consensus 258 ~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGl 337 (877)
T KOG1969|consen 258 DKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGL 337 (877)
T ss_pred cceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCC
Confidence 34999999999999999999888888888866210 127999999999
Q ss_pred hHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC-C---CCCCceEEEE
Q 036794 455 GKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS-R---PPSQYRIFVF 530 (1152)
Q Consensus 455 GKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~-P---~~a~~kVVII 530 (1152)
||||+|+++|+..++. ++|+++........+.+.++.+... . ..+++.++||
T Consensus 338 GKTTLAHViAkqaGYs------------------------VvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 338 GKTTLAHVIAKQAGYS------------------------VVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred ChhHHHHHHHHhcCce------------------------EEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEE
Confidence 9999999999998865 7888887777777777777665422 2 2367889999
Q ss_pred eCCCCCCHHHHHHHHHHHhh------CCC---------------CEEEEEEcCCCCc-chHHHHccceEEEecCCChhHH
Q 036794 531 DDCDTLSPDSWSAISKVVDR------APR---------------RVVFILVSSSLDA-LPHIIISRCQKFFFPKMKDADI 588 (1152)
Q Consensus 531 DEID~Ls~eaqnaLLklLEe------pp~---------------~VifILaTN~~dk-L~~aL~SR~qvI~F~~p~~~EI 588 (1152)
||||.....+.+.|+.++.. .+. .-.||++||+... -...|+--++++.|.+++..-+
T Consensus 394 DEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~s~L 473 (877)
T KOG1969|consen 394 DEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQSRL 473 (877)
T ss_pred ecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCChhHH
Confidence 99999999999999999883 111 1248999998751 2223777788999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCC----CCHHHHHHHHhc--cchhhHHHHHHHHH
Q 036794 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR----ISVPLVQELVGL--ISDEKLVDLLDLAL 661 (1152)
Q Consensus 589 ~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~----IT~EdV~elVg~--v~ee~ifdLldAil 661 (1152)
+++|+.+|..+|+.++..+|..|++++.+|+|.++|.|+.++..+++ |..-++.+.... .....+|.+...++
T Consensus 474 v~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~~~~k~~~~slf~~w~ei~ 552 (877)
T KOG1969|consen 474 VERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKNVGAKSNSDSLFSWWKEIF 552 (877)
T ss_pred HHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhhhcccccccchHHHHHHHH
Confidence 99999999999999999999999999999999999999999988765 566666554432 22334555544433
|
|
| >COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.2e-18 Score=185.49 Aligned_cols=211 Identities=21% Similarity=0.264 Sum_probs=153.9
Q ss_pred hhhCCCCcCcccCcHHHHHHHHH---HHHh----CC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSN---AVMR----RK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~---aL~~----gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
+....-+|+|+|||+++++.-.- .++. +. .|..+|||||||||||.+|+++|++.+.+.....
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vk--------- 183 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVK--------- 183 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEec---------
Confidence 34455689999999988865443 3332 22 2458999999999999999999998775532111
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhhC-
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVDRA- 551 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLEep- 551 (1152)
... .++..-.-+..+|.++.+.+... ..+||||||+|.+.. +..|+||.-|+..
T Consensus 184 -------at~--liGehVGdgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~ 250 (368)
T COG1223 184 -------ATE--LIGEHVGDGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIK 250 (368)
T ss_pred -------hHH--HHHHHhhhHHHHHHHHHHHHHhc----CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcc
Confidence 000 01111123456788888887644 348999999998743 3578999998873
Q ss_pred -CCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHH
Q 036794 552 -PRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTLEQ 628 (1152)
Q Consensus 552 -p~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~LEk 628 (1152)
...|++|++||+++.|++++++|+. .|.|..|+.+++..+|+..+++..+.++.+ +++++..+.| +-|++..-+-+
T Consensus 251 eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~SgRdikekvlK 329 (368)
T COG1223 251 ENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGMSGRDIKEKVLK 329 (368)
T ss_pred cCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCCCchhHHHHHHH
Confidence 4689999999999999999999999 599999999999999999999988888776 8888888776 66666544444
Q ss_pred HHHh------CCCCCHHHHHHHHh
Q 036794 629 LSLL------GQRISVPLVQELVG 646 (1152)
Q Consensus 629 LsLl------g~~IT~EdV~elVg 646 (1152)
.++. .+.|+.++++.++.
T Consensus 330 ~aLh~Ai~ed~e~v~~edie~al~ 353 (368)
T COG1223 330 TALHRAIAEDREKVEREDIEKALK 353 (368)
T ss_pred HHHHHHHHhchhhhhHHHHHHHHH
Confidence 3332 23466666666554
|
|
| >COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-17 Score=195.43 Aligned_cols=200 Identities=16% Similarity=0.129 Sum_probs=145.8
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--------------CCCCCCCc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--------------KPCGFCNS 483 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--------------epcg~c~~ 483 (1152)
.+.++||++.+++.|...+.+ ......+||+|++||||+.+|++|++.-.....++. +.||+.+.
T Consensus 139 ~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekG 218 (464)
T COG2204 139 LGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKG 218 (464)
T ss_pred ccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhccccc
Confidence 578999999999999988876 455567999999999999999999997544322211 11222221
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------AP 552 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp 552 (1152)
++.-......+.++ .++++++|||||..|+.+.|..||++|++ .+
T Consensus 219 AFTGA~~~r~G~fE------------------------~A~GGTLfLDEI~~mpl~~Q~kLLRvLqe~~~~rvG~~~~i~ 274 (464)
T COG2204 219 AFTGAITRRIGRFE------------------------QANGGTLFLDEIGEMPLELQVKLLRVLQEREFERVGGNKPIK 274 (464)
T ss_pred CcCCcccccCccee------------------------EcCCceEEeeccccCCHHHHHHHHHHHHcCeeEecCCCcccc
Confidence 11111111111111 25678999999999999999999999997 34
Q ss_pred CCEEEEEEcCCC-------CcchHHHHccceEEEecCCChhHHH----H----HHHHHHHHcCC---CCCHHHHHHHHHh
Q 036794 553 RRVVFILVSSSL-------DALPHIIISRCQKFFFPKMKDADII----Y----TLQWIASKEGI---EIDKDALKLIASR 614 (1152)
Q Consensus 553 ~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~~~EI~----e----iL~~iakkeGl---~Id~dALelLAe~ 614 (1152)
.+|+||.+||.. .++-+.|+.|+.++.+.-|+..+.. - ++++.+.+.|. .++++|++.|..|
T Consensus 275 vdvRiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 275 VDVRIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred eeeEEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 689999999853 2588899999998776666654433 2 44555555544 5899999999999
Q ss_pred -cCCCHHHHHHHHHHHHHhC--CCCCHHHHH
Q 036794 615 -SDGSLRDAEMTLEQLSLLG--QRISVPLVQ 642 (1152)
Q Consensus 615 -s~GDLR~Ain~LEkLsLlg--~~IT~EdV~ 642 (1152)
|+||+|++.|.+++++.+. ..|+.+++.
T Consensus 355 ~WPGNVREL~N~ver~~il~~~~~i~~~~l~ 385 (464)
T COG2204 355 DWPGNVRELENVVERAVILSEGPEIEVEDLP 385 (464)
T ss_pred CCChHHHHHHHHHHHHHhcCCccccchhhcc
Confidence 9999999999999997773 358877755
|
|
| >PRK08903 DnaA regulatory inactivator Hda; Validated | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-16 Score=171.53 Aligned_cols=199 Identities=15% Similarity=0.266 Sum_probs=149.4
Q ss_pred CCCCcCccc--CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 416 MPRTFRDLV--GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 416 RP~sFddLV--GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
+|.+|++++ +++.++..+.++.........++|+||+|||||++|+++++++.....
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~--------------------- 71 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGR--------------------- 71 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC---------------------
Confidence 345799988 356788888888775555567999999999999999999998643211
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--CCEEEEEEcCCCC---cch
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--RRVVFILVSSSLD---ALP 568 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--~~VifILaTN~~d---kL~ 568 (1152)
.+..++.. .+...+ .+.....+|||||+|.++...+..|+.+++... ...++|++++.+. .+.
T Consensus 72 ~~~~i~~~------~~~~~~------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 72 NARYLDAA------SPLLAF------DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLR 139 (227)
T ss_pred cEEEEehH------HhHHHH------hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCC
Confidence 12222211 111111 112345799999999999888889988887632 3334666665432 355
Q ss_pred HHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCCCCHHHH
Q 036794 569 HIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQRISVPLV 641 (1152)
Q Consensus 569 ~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~~IT~EdV 641 (1152)
+.|.+|+ ..+.+++++.++....|...+.+.++.++++++++|+..|+||++.+.+.|+.+..+ ...||...+
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i~~~~~ 219 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPVTLPLL 219 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 7788886 589999999999999999999999999999999999999999999999999997533 456999999
Q ss_pred HHHHhc
Q 036794 642 QELVGL 647 (1152)
Q Consensus 642 ~elVg~ 647 (1152)
+++++.
T Consensus 220 ~~~l~~ 225 (227)
T PRK08903 220 REMLAQ 225 (227)
T ss_pred HHHHhc
Confidence 999864
|
|
| >COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.8e-17 Score=192.49 Aligned_cols=208 Identities=19% Similarity=0.222 Sum_probs=145.4
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc-
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD- 488 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~- 488 (1152)
+..+| +|++|+|.+..+..+...++ ....+..+||.|++||||+.+|++|++.......++ ...+|.++.
T Consensus 238 ~~a~y---~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PF-----IaiNCaAiPe 309 (560)
T COG3829 238 LKAKY---TFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRANGPF-----IAINCAAIPE 309 (560)
T ss_pred ccccc---chhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCe-----EEEecccCCH
Confidence 45566 59999999877766665554 467778899999999999999999998654332222 122333331
Q ss_pred -----------CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------
Q 036794 489 -----------RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------- 550 (1152)
Q Consensus 489 -----------~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------- 550 (1152)
.|.+.+...-+..+ +++ .++++.||||||..|+...|.+||++|++
T Consensus 310 ~LlESELFGye~GAFTGA~~~GK~G---------lfE-------~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG 373 (560)
T COG3829 310 TLLESELFGYEKGAFTGASKGGKPG---------LFE-------LANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVG 373 (560)
T ss_pred HHHHHHHhCcCCccccccccCCCCc---------cee-------eccCCeEEehhhccCCHHHHHHHHHHHhhceEEecC
Confidence 12211111100000 111 15678999999999999999999999998
Q ss_pred ----CCCCEEEEEEcCCC-------CcchHHHHccceEEEecCCChh----HHHHH----HHHHHHHcCC---CCCHHHH
Q 036794 551 ----APRRVVFILVSSSL-------DALPHIIISRCQKFFFPKMKDA----DIIYT----LQWIASKEGI---EIDKDAL 608 (1152)
Q Consensus 551 ----pp~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~~~----EI~ei----L~~iakkeGl---~Id~dAL 608 (1152)
.+.++++|.|||.. ..+-+.|..|+.++.+.-|+.. ||... |.++.+..+. .++++++
T Consensus 374 ~t~~~~vDVRIIAATN~nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~ 453 (560)
T COG3829 374 GTKPIPVDVRIIAATNRNLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDAL 453 (560)
T ss_pred CCCceeeEEEEEeccCcCHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHH
Confidence 45799999999953 2577889999998666555543 44433 3333344443 3899999
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHh---CCCCCHHHHH
Q 036794 609 KLIASR-SDGSLRDAEMTLEQLSLL---GQRISVPLVQ 642 (1152)
Q Consensus 609 elLAe~-s~GDLR~Ain~LEkLsLl---g~~IT~EdV~ 642 (1152)
..|.+| |+||+|++.|+++++..+ .+.|+.+++.
T Consensus 454 ~~L~~y~WPGNVRELeNviER~v~~~~~~~~I~~~~lp 491 (560)
T COG3829 454 ALLLRYDWPGNVRELENVIERAVNLVESDGLIDADDLP 491 (560)
T ss_pred HHHHhCCCCchHHHHHHHHHHHHhccCCcceeehhhcc
Confidence 999999 999999999999999865 2347777665
|
|
| >COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.8e-17 Score=180.61 Aligned_cols=207 Identities=18% Similarity=0.236 Sum_probs=153.5
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||-|-+..++.|++++.-. ..|.++|||||||||||.+|+|+|+..++.+....
T Consensus 148 vtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvv---------- 217 (406)
T COG1222 148 VTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVV---------- 217 (406)
T ss_pred CChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEec----------
Confidence 48899999999999999998642 45568999999999999999999999887642211
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
|+. ++ ..+-.-+..-++++|.-+... ...||||||||.+. .+.|..|+++|.+
T Consensus 218 ----gSE--lV--qKYiGEGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGF 285 (406)
T COG1222 218 ----GSE--LV--QKYIGEGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGF 285 (406)
T ss_pred ----cHH--HH--HHHhccchHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCC
Confidence 110 00 001112345677887776543 45899999999873 3568888888876
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain 624 (1152)
+..++-+|+|||.++.|+|+|++-+. .|.|+.|+.+...++++-+..+..+ +++ -++.|+..++| +-.++.+
T Consensus 286 D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l--~~dvd~e~la~~~~g~sGAdlka 363 (406)
T COG1222 286 DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL--ADDVDLELLARLTEGFSGADLKA 363 (406)
T ss_pred CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC--ccCcCHHHHHHhcCCCchHHHHH
Confidence 66799999999999999999998655 5999999999999999988877554 333 36777777665 5556666
Q ss_pred HHHHHHHh---C--CCCCHHHHHHHHhcc
Q 036794 625 TLEQLSLL---G--QRISVPLVQELVGLI 648 (1152)
Q Consensus 625 ~LEkLsLl---g--~~IT~EdV~elVg~v 648 (1152)
++..+.++ . ..||.+|+.+++..+
T Consensus 364 ictEAGm~AiR~~R~~Vt~~DF~~Av~KV 392 (406)
T COG1222 364 ICTEAGMFAIRERRDEVTMEDFLKAVEKV 392 (406)
T ss_pred HHHHHhHHHHHhccCeecHHHHHHHHHHH
Confidence 66665444 2 348988888877654
|
|
| >TIGR00602 rad24 checkpoint protein rad24 | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.4e-16 Score=193.89 Aligned_cols=268 Identities=15% Similarity=0.141 Sum_probs=168.3
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC----cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG----LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~----~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
...+|++||+|++|+||+||++.+..|..++.....+ ..++|+||+|+|||++++++|+.++....++..|.
T Consensus 70 ~~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv---- 145 (637)
T TIGR00602 70 GNEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT---- 145 (637)
T ss_pred ccCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh----
Confidence 3569999999999999999999999999998875432 36999999999999999999999886543321111
Q ss_pred ccccccCCCccceEEeC---CCCCCCHHHHHHHHHHHhhC--C----CCCCceEEEEeCCCCCCHH---HHHHHHH--HH
Q 036794 483 SCISHDRGKSRNIKEVG---PVGNFDFESILDLLDNMVTS--R----PPSQYRIFVFDDCDTLSPD---SWSAISK--VV 548 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEId---aas~~~vdeIreLle~a~~~--P----~~a~~kVVIIDEID~Ls~e---aqnaLLk--lL 548 (1152)
.|..... .+..+..+. .......+.+..++..+... . ...+++||||||++.+... ++..++. +.
T Consensus 146 ~~~~~~~-~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~ 224 (637)
T TIGR00602 146 LPDFQKN-DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYV 224 (637)
T ss_pred hhccccc-ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhh
Confidence 1111100 000000000 00012345566666654311 0 1356789999999776432 3444444 33
Q ss_pred hhCCCCEEEEEEcCCC--------C-cc------hHHHHc--cceEEEecCCChhHHHHHHHHHHHHcCCC------C-C
Q 036794 549 DRAPRRVVFILVSSSL--------D-AL------PHIIIS--RCQKFFFPKMKDADIIYTLQWIASKEGIE------I-D 604 (1152)
Q Consensus 549 Eepp~~VifILaTN~~--------d-kL------~~aL~S--R~qvI~F~~p~~~EI~eiL~~iakkeGl~------I-d 604 (1152)
+. ..+.+|+++++. + .+ .++|++ |+.+|.|+++...++.+.|..+++.++.. + +
T Consensus 225 e~--~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~ 302 (637)
T TIGR00602 225 SI--GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPK 302 (637)
T ss_pred cC--CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCC
Confidence 33 345566665521 1 12 367887 56679999999999999999999986532 2 5
Q ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHhCC---------CCCHHHHHHHHhccc--hhhHHHHHHHHHcCCHH-HHHHHH
Q 036794 605 KDALKLIASRSDGSLRDAEMTLEQLSLLGQ---------RISVPLVQELVGLIS--DEKLVDLLDLALSADTV-NTVKNL 672 (1152)
Q Consensus 605 ~dALelLAe~s~GDLR~Ain~LEkLsLlg~---------~IT~EdV~elVg~v~--ee~ifdLldAils~d~~-~ALk~L 672 (1152)
++++..|+..+.||+|.|++.|+.++.-++ .++..++........ ...--+.++++..++.. ..++.|
T Consensus 303 ~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~k~~~~t~~e~~~l~~~~~rd~sl~lfhal 382 (637)
T TIGR00602 303 KTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKIKGKHSSNNENQEIQALGGKDVSLFLFRAL 382 (637)
T ss_pred HHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccccCCCCCchhHHHHHhhccccchhHHHHHh
Confidence 689999999999999999999999866532 245454444332221 11123445555544443 334455
Q ss_pred HHHHHhCCC
Q 036794 673 RVIMETGVE 681 (1152)
Q Consensus 673 ~~LL~~G~d 681 (1152)
...+.+..+
T Consensus 383 gkily~Kr~ 391 (637)
T TIGR00602 383 GKILYCKRA 391 (637)
T ss_pred Chhhccccc
Confidence 555554443
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >TIGR02881 spore_V_K stage V sporulation protein K | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-16 Score=175.88 Aligned_cols=187 Identities=18% Similarity=0.242 Sum_probs=136.5
Q ss_pred cCcccCcHHHHHHHHHHHHh----------C----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 420 FRDLVGQNLVAQALSNAVMR----------R----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~----------g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+++++|.+.+++.|.+.+.. | .....+||+||||||||++|+++|+.+....... .+.
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~---~~~----- 76 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLS---KGH----- 76 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCccc---CCc-----
Confidence 57899999998887643221 1 1234689999999999999999999875332111 111
Q ss_pred cccCCCccceEEeCCCC------CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhC
Q 036794 486 SHDRGKSRNIKEVGPVG------NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------PDSWSAISKVVDRA 551 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas------~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------~eaqnaLLklLEep 551 (1152)
+++++... ......+.++++.+ .++||||||+|.|. .+.++.|++.+++.
T Consensus 77 ---------~v~~~~~~l~~~~~g~~~~~~~~~~~~a-------~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~ 140 (261)
T TIGR02881 77 ---------LIEVERADLVGEYIGHTAQKTREVIKKA-------LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN 140 (261)
T ss_pred ---------eEEecHHHhhhhhccchHHHHHHHHHhc-------cCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc
Confidence 11111100 00123445555543 24699999999975 35678999999998
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh----------c
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR----------S 615 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~----------s 615 (1152)
..++++|+++...+ .+.++|.+|+. .|.|++++.+++.++++.++...++.++++++.+|+.+ .
T Consensus 141 ~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~ 220 (261)
T TIGR02881 141 RNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSRE 220 (261)
T ss_pred CCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCC
Confidence 88888888764322 36788999995 69999999999999999999999999999999998654 3
Q ss_pred CCCHHHHHHHHHHHH
Q 036794 616 DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 616 ~GDLR~Ain~LEkLs 630 (1152)
.||.|.+.|+++++.
T Consensus 221 ~gn~R~~~n~~e~a~ 235 (261)
T TIGR02881 221 FSNARYVRNIIEKAI 235 (261)
T ss_pred CchHHHHHHHHHHHH
Confidence 599999999999964
|
Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group. |
| >PRK06581 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-16 Score=169.77 Aligned_cols=182 Identities=14% Similarity=0.111 Sum_probs=151.9
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCC-chHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC-------
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHG-TGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV------- 501 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpG-TGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa------- 501 (1152)
+..|.+.++.++.+|+|||.|..+ ++|..++..+++.+.|.. +..+.++|+..+.+.
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~~---------------i~~~~HPD~~~I~pe~~~~~~~ 66 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKNS---------------IPLENNPDYHFIARETSATSNA 66 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhccC---------------cccCCCCCEEEEeccccccccC
Confidence 467899999999999999999998 999999999999988752 345678888888754
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEec
Q 036794 502 GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581 (1152)
Q Consensus 502 s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~ 581 (1152)
...+++++|++.+.+...|..++++|+||+++|.|+.++.|+||++|||||.+++||++|+++..+++||+|||+.+.|.
T Consensus 67 ~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq~i~~~ 146 (263)
T PRK06581 67 KNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCFKINVR 146 (263)
T ss_pred CcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceEEEeCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036794 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 582 ~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL 629 (1152)
.+.+....++....+.-. .+..-+++|.+...-|..+.....+.+
T Consensus 147 ~p~~~~~~e~~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~~~ 191 (263)
T PRK06581 147 SSILHAYNELYSQFIQPI---ADNKTLDFINRFTTKDRELWLDFIDNL 191 (263)
T ss_pred CCCHHHHHHHHHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 998877776665443321 344457777776555555555544444
|
|
| >KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-16 Score=184.89 Aligned_cols=204 Identities=21% Similarity=0.208 Sum_probs=153.4
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
-.+|+|+.|.+++++.|.+.+.. |++|.++||+||||||||.+||++|.+.+.+ |.+|
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VP-------FF~~---- 368 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVP-------FFYA---- 368 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCC-------eEec----
Confidence 45799999999999999987754 7889999999999999999999999887644 3332
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh--CC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR--AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe--pp 552 (1152)
.|...+-..+ ..+...+|+++..+.... +.||||||+|.... ...|.||--|+. ..
T Consensus 369 ---sGSEFdEm~V----GvGArRVRdLF~aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN 437 (752)
T KOG0734|consen 369 ---SGSEFDEMFV----GVGARRVRDLFAAAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN 437 (752)
T ss_pred ---cccchhhhhh----cccHHHHHHHHHHHHhcC----CeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC
Confidence 2333222222 356789999999986543 38999999998732 234555555554 45
Q ss_pred CCEEEEEEcCCCCcchHHHHccc--e-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHHHH
Q 036794 553 RRVVFILVSSSLDALPHIIISRC--Q-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-SLRDAEMTLE 627 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~--q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-DLR~Ain~LE 627 (1152)
..++||.+||.++.|+++|.+.+ . .|.++.|+..-..++|..++.+- .+++++ +..||+-+.| +-.++.|++.
T Consensus 438 eGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki--~~~~~VD~~iiARGT~GFsGAdLaNlVN 515 (752)
T KOG0734|consen 438 EGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKI--PLDEDVDPKIIARGTPGFSGADLANLVN 515 (752)
T ss_pred CceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcC--CcccCCCHhHhccCCCCCchHHHHHHHH
Confidence 68999999999999999998854 4 48899999999999999988753 333222 4556777776 7889999999
Q ss_pred HHHHhC-----CCCCHHHHHHH
Q 036794 628 QLSLLG-----QRISVPLVQEL 644 (1152)
Q Consensus 628 kLsLlg-----~~IT~EdV~el 644 (1152)
++++++ ..+|+.+++..
T Consensus 516 qAAlkAa~dga~~VtM~~LE~a 537 (752)
T KOG0734|consen 516 QAALKAAVDGAEMVTMKHLEFA 537 (752)
T ss_pred HHHHHHHhcCcccccHHHHhhh
Confidence 988772 34777776644
|
|
| >COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.71 E-value=7.4e-17 Score=186.86 Aligned_cols=198 Identities=18% Similarity=0.213 Sum_probs=146.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHc----------ccCCCCC----CCCCCCCc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALN----------CQSLEQP----KPCGFCNS 483 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~----------~~~~e~~----epcg~c~~ 483 (1152)
.+.+|||++.++..+.+.|.. .+...+|||+|++||||+.+|++|++... |...+.+ +.||+.+.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGHeKG 300 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGHEKG 300 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhccccc
Confidence 478999999999888887765 56667899999999999999999998643 3332221 33333333
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CC
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------AP 552 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp 552 (1152)
.+.-..+..++-||+ ++++.+|||||+.|+...|.+||++|++ ..
T Consensus 301 AFTGA~~~r~GrFEl------------------------AdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ik 356 (550)
T COG3604 301 AFTGAINTRRGRFEL------------------------ADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIK 356 (550)
T ss_pred ccccchhccCcceee------------------------cCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeE
Confidence 333222222222222 5678999999999999999999999998 34
Q ss_pred CCEEEEEEcCCC-------CcchHHHHccceEEEecCCChhH----HH----HHHHHHHHHcCC---CCCHHHHHHHHHh
Q 036794 553 RRVVFILVSSSL-------DALPHIIISRCQKFFFPKMKDAD----II----YTLQWIASKEGI---EIDKDALKLIASR 614 (1152)
Q Consensus 553 ~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~~~E----I~----eiL~~iakkeGl---~Id~dALelLAe~ 614 (1152)
.+|++|++||.. .++-..|+.|+.+|.+.-|+..+ +. .++++...+.|. .++++|++.|..|
T Consensus 357 VDVRiIAATNRDL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 357 VDVRVIAATNRDLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EEEEEEeccchhHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 689999999952 36888899999997766665543 32 244555555555 5899999999999
Q ss_pred -cCCCHHHHHHHHHHHHHhC-CCCCHHH
Q 036794 615 -SDGSLRDAEMTLEQLSLLG-QRISVPL 640 (1152)
Q Consensus 615 -s~GDLR~Ain~LEkLsLlg-~~IT~Ed 640 (1152)
|+||+|++.|.++++++.+ ..++.++
T Consensus 437 ~wPGNVRELen~veRavlla~~~~~~~d 464 (550)
T COG3604 437 EWPGNVRELENVVERAVLLAGRLTRRGD 464 (550)
T ss_pred CCCCcHHHHHHHHHHHHHHhcccCCCcc
Confidence 9999999999999998765 3455444
|
|
| >PRK08084 DNA replication initiation factor; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=9.4e-16 Score=166.98 Aligned_cols=198 Identities=20% Similarity=0.283 Sum_probs=142.9
Q ss_pred CcCccc-C-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 419 TFRDLV-G-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 419 sFddLV-G-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
+|++++ | +..++..+..+...... ..++||||+|+|||++++++++++..... ...+.
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~-~~l~l~Gp~G~GKThLl~a~~~~~~~~~~-------------------~v~y~ 79 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHS-GYIYLWSREGAGRSHLLHAACAELSQRGR-------------------AVGYV 79 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHHhCCC-------------------eEEEE
Confidence 689877 4 66788888887765443 46899999999999999999998763210 00011
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC--CCCEEEEEEcCCCC----cch
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA--PRRVVFILVSSSLD----ALP 568 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep--p~~VifILaTN~~d----kL~ 568 (1152)
.++... ....++++.+ ....+|||||++.+.. ..+..|+.+++.. .....+|++++.+. .+.
T Consensus 80 ~~~~~~----~~~~~~~~~~------~~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~ 149 (235)
T PRK08084 80 PLDKRA----WFVPEVLEGM------EQLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGL 149 (235)
T ss_pred EHHHHh----hhhHHHHHHh------hhCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCccc
Confidence 111100 0112233322 1236999999999864 3344555555442 23456777777542 356
Q ss_pred HHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHHHH
Q 036794 569 HIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVPLV 641 (1152)
Q Consensus 569 ~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~EdV 641 (1152)
+.|+||+ .++.+.+|+.+++..+|++.+...|+.++++++++|+.+++||+|.+++.|+++.. . +..||.+.+
T Consensus 150 ~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~~ 229 (235)
T PRK08084 150 PDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFV 229 (235)
T ss_pred HHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 8899999 68999999999999999998998999999999999999999999999999999742 2 457999999
Q ss_pred HHHHh
Q 036794 642 QELVG 646 (1152)
Q Consensus 642 ~elVg 646 (1152)
+++++
T Consensus 230 k~~l~ 234 (235)
T PRK08084 230 KEILK 234 (235)
T ss_pred HHHHc
Confidence 98874
|
|
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.7e-16 Score=188.35 Aligned_cols=239 Identities=21% Similarity=0.262 Sum_probs=160.6
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC---CCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE---QPKPCGFCN 482 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e---~~epcg~c~ 482 (1152)
....++.+.|||++|++++||+.++..+...+.... +..++|+||+|||||++|+++++........ ...++ .+.
T Consensus 139 ~~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~-~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~f-v~i 216 (615)
T TIGR02903 139 KLHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPF-PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPF-VEV 216 (615)
T ss_pred HhhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCC-CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCe-EEE
Confidence 356778888999999999999999998887776544 4468999999999999999998876432111 00111 111
Q ss_pred ccccccCCCccce--EEeCCCCCCCHHHHHHHHHHHh------hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---
Q 036794 483 SCISHDRGKSRNI--KEVGPVGNFDFESILDLLDNMV------TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--- 551 (1152)
Q Consensus 483 ~c~~i~~g~~~dv--iEIdaas~~~vdeIreLle~a~------~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep--- 551 (1152)
.|..+... ...+ ..++.............+.... ........++|||||++.|+...++.|+++|++.
T Consensus 217 ~~~~l~~d-~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~ 295 (615)
T TIGR02903 217 DGTTLRWD-PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVE 295 (615)
T ss_pred echhccCC-HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEE
Confidence 22221100 0000 0000000000000111111110 0011234579999999999999999999999862
Q ss_pred -------------------------CCCEEEEEEcC-CCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCH
Q 036794 552 -------------------------PRRVVFILVSS-SLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDK 605 (1152)
Q Consensus 552 -------------------------p~~VifILaTN-~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~ 605 (1152)
+.++++|++|+ ++..++++|++||..+.|++++.+++..+++..+.+.++.+++
T Consensus 296 ~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~~~~v~ls~ 375 (615)
T TIGR02903 296 FSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIALIVLNAAEKINVHLAA 375 (615)
T ss_pred eecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 12356666554 5677899999999999999999999999999999988989999
Q ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHhC-----------C--CCCHHHHHHHHhcc
Q 036794 606 DALKLIASRSDGSLRDAEMTLEQLSLLG-----------Q--RISVPLVQELVGLI 648 (1152)
Q Consensus 606 dALelLAe~s~GDLR~Ain~LEkLsLlg-----------~--~IT~EdV~elVg~v 648 (1152)
++++.|+.++. +.|.++|.|+.+..+. + .|+.++|.++++..
T Consensus 376 eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~ 430 (615)
T TIGR02903 376 GVEELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQIS 430 (615)
T ss_pred HHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCC
Confidence 99999999853 6699999998763220 1 37788888887764
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-15 Score=163.48 Aligned_cols=198 Identities=16% Similarity=0.263 Sum_probs=142.3
Q ss_pred CCcCcccC--cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 418 RTFRDLVG--QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 418 ~sFddLVG--Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
.+|+++++ ++.++..++.++.. ..+..++|+||+|||||++|+++++.+..... + +
T Consensus 12 ~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~----~-----------------~ 69 (226)
T TIGR03420 12 PTFDNFYAGGNAELLAALRQLAAG-KGDRFLYLWGESGSGKSHLLQAACAAAEERGK----S-----------------A 69 (226)
T ss_pred hhhcCcCcCCcHHHHHHHHHHHhc-CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCC----c-----------------E
Confidence 46888883 66788999988764 44557899999999999999999998753211 0 1
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhC-CCCEEEEEEcCCC-Cc--ch-
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRA-PRRVVFILVSSSL-DA--LP- 568 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEep-p~~VifILaTN~~-dk--L~- 568 (1152)
..++..... ....++++.+ ....+|||||+|.+.... ++.|..+++.. .....+|++++.. .. +.
T Consensus 70 ~~i~~~~~~--~~~~~~~~~~------~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 70 IYLPLAELA--QADPEVLEGL------EQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred EEEeHHHHH--HhHHHHHhhc------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCccc
Confidence 222110000 0112222222 234699999999998644 77787777652 1234666776632 22 22
Q ss_pred HHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHHHH
Q 036794 569 HIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVPLV 641 (1152)
Q Consensus 569 ~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~EdV 641 (1152)
+.|.+|+. .+.+++++.+++..+++.++.+.++.++++++++|+..|+||+|++.+.|+++.. . ++.||.+.|
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~i~~~~~ 221 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRKITIPFV 221 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 67888864 7999999999999999998888999999999999999999999999999988743 2 457999999
Q ss_pred HHHH
Q 036794 642 QELV 645 (1152)
Q Consensus 642 ~elV 645 (1152)
.+++
T Consensus 222 ~~~~ 225 (226)
T TIGR03420 222 KEVL 225 (226)
T ss_pred HHHh
Confidence 8875
|
Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP. |
| >PRK08727 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=163.55 Aligned_cols=199 Identities=17% Similarity=0.273 Sum_probs=142.6
Q ss_pred CcCcccC-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 419 TFRDLVG-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 419 sFddLVG-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
+|+++++ .+..+..+.... .+.....++|+||+|||||+++++++.++..... .+..
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~---------------------~~~y 74 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALALCAAAEQAGR---------------------SSAY 74 (233)
T ss_pred ChhhccCCcHHHHHHHHHHH-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC---------------------cEEE
Confidence 7999775 444555444433 2444456899999999999999999988643210 0112
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhC-CCCEEEEEEcCCC-C---cchHH
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--PDSWSAISKVVDRA-PRRVVFILVSSSL-D---ALPHI 570 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--~eaqnaLLklLEep-p~~VifILaTN~~-d---kL~~a 570 (1152)
+.... ....+.+.++.. ....+|+|||++.+. ...+..|+.+++.. .....+|++++.+ . .+.+.
T Consensus 75 ~~~~~--~~~~~~~~~~~l------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~d 146 (233)
T PRK08727 75 LPLQA--AAGRLRDALEAL------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPD 146 (233)
T ss_pred EeHHH--hhhhHHHHHHHH------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHH
Confidence 21100 011233344443 234699999999986 34455777777652 2345577777753 3 35688
Q ss_pred HHcc---ceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHHHHHH
Q 036794 571 IISR---CQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVPLVQE 643 (1152)
Q Consensus 571 L~SR---~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~EdV~e 643 (1152)
|.|| |..+.|++|+.+++..+|+.++...++.++++++++|+++++||+|.+++.|+++.. . +..||.+.+++
T Consensus 147 L~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~~~~~~~~it~~~~~~ 226 (233)
T PRK08727 147 LRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRESLAAKRRVTVPFLRR 226 (233)
T ss_pred HHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 9999 778999999999999999999999999999999999999999999999999998742 2 45699999998
Q ss_pred HHhc
Q 036794 644 LVGL 647 (1152)
Q Consensus 644 lVg~ 647 (1152)
++..
T Consensus 227 ~l~~ 230 (233)
T PRK08727 227 VLEE 230 (233)
T ss_pred HHhh
Confidence 8754
|
|
| >TIGR02928 orc1/cdc6 family replication initiation protein | Back alignment and domain information |
|---|
Probab=99.68 E-value=7e-15 Score=168.28 Aligned_cols=234 Identities=20% Similarity=0.227 Sum_probs=150.7
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCcc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSC 484 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c 484 (1152)
..|...|.|. +|+|++..++.|..++.. +..+..++|+||||||||++++.+++.+.........++.. ..+|
T Consensus 6 ~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~ 82 (365)
T TIGR02928 6 DLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNC 82 (365)
T ss_pred hhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEEC
Confidence 3566789884 789999988888877764 55556789999999999999999999875432111111111 1112
Q ss_pred ccccCCC------ccceE--EeC-CCCCCCHHHH-HHHHHHHhhCCCCCCceEEEEeCCCCCCHH---HHHHHHHH--Hh
Q 036794 485 ISHDRGK------SRNIK--EVG-PVGNFDFESI-LDLLDNMVTSRPPSQYRIFVFDDCDTLSPD---SWSAISKV--VD 549 (1152)
Q Consensus 485 ~~i~~g~------~~dvi--EId-aas~~~vdeI-reLle~a~~~P~~a~~kVVIIDEID~Ls~e---aqnaLLkl--LE 549 (1152)
....... ...+. ... +.......++ ..+++.+. ......||||||+|.+... ....|+++ ..
T Consensus 83 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 83 QILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNG 159 (365)
T ss_pred CCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCCcHHHHhHhcccccc
Confidence 1111000 00000 000 0111122222 22333322 1244578999999999532 33444444 22
Q ss_pred hC-CCCEEEEEEcCCCC---cchHHHHccce--EEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHh---cCCC
Q 036794 550 RA-PRRVVFILVSSSLD---ALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASR---SDGS 618 (1152)
Q Consensus 550 ep-p~~VifILaTN~~d---kL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~---s~GD 618 (1152)
+. ..++.+|+++|.++ .+.+.+.+|+. .+.|++++.+++.++|..+++. .+..++++++++++.. +.||
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd 239 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGD 239 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCC
Confidence 22 36789999999875 46777888884 6999999999999999998863 2334889988876655 5799
Q ss_pred HHHHHHHHHHHHHhC-----CCCCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLLG-----QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLlg-----~~IT~EdV~elVg~v 648 (1152)
+|.++++|+.++..+ +.||.++|.+++...
T Consensus 240 ~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 240 ARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 999999999976542 359999999887765
|
Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other. |
| >TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-15 Score=171.28 Aligned_cols=194 Identities=16% Similarity=0.172 Sum_probs=139.5
Q ss_pred CcccCcHHHHHHHHHHHHh----------C----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 421 RDLVGQNLVAQALSNAVMR----------R----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~----------g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+++|.+.+++.|.+.+.. | .....+||+||||||||++|+++|+.+.........++.++. |..
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~-~~~ 100 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVT-RDD 100 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEec-HHH
Confidence 4699999998887664321 1 123469999999999999999999988643221111111111 100
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhCCCCEEE
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEepp~~Vif 557 (1152)
+.. .........+.++++.+ .++||||||++.| ..+.++.|+++|++...++++
T Consensus 101 --------l~~--~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~v 163 (284)
T TIGR02880 101 --------LVG--QYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVV 163 (284)
T ss_pred --------HhH--hhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEE
Confidence 000 00001123445555553 3479999999987 355788999999998888999
Q ss_pred EEEcCCC--C---cchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cCCCHHHHH
Q 036794 558 ILVSSSL--D---ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------SDGSLRDAE 623 (1152)
Q Consensus 558 ILaTN~~--d---kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------s~GDLR~Ai 623 (1152)
|++++.. + .+.++|.+|+. .|.|++++.+++..++...+++.+..+++++++.+..+ |.||.|.+.
T Consensus 164 I~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lr 243 (284)
T TIGR02880 164 ILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIR 243 (284)
T ss_pred EEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 8887643 2 24688999997 69999999999999999999999999999999998776 789999999
Q ss_pred HHHHHHHHh
Q 036794 624 MTLEQLSLL 632 (1152)
Q Consensus 624 n~LEkLsLl 632 (1152)
|.++++...
T Consensus 244 n~ve~~~~~ 252 (284)
T TIGR02880 244 NAIDRARLR 252 (284)
T ss_pred HHHHHHHHH
Confidence 999998644
|
Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis. |
| >PTZ00112 origin recognition complex 1 protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.1e-15 Score=182.36 Aligned_cols=236 Identities=17% Similarity=0.190 Sum_probs=155.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC-CC-CC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP-CG-FC 481 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep-cg-~c 481 (1152)
...|...|.| +.|.|.+..++.|...|.. .....+++|+|+||||||++++.+.++|.........+ |. ..
T Consensus 745 ~rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVY 821 (1164)
T PTZ00112 745 IRMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFE 821 (1164)
T ss_pred HHHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEE
Confidence 4455566877 6788988777666655543 33334567999999999999999998875322111111 11 12
Q ss_pred CccccccCCCc------cceEEeCCCCC-CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---C
Q 036794 482 NSCISHDRGKS------RNIKEVGPVGN-FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---A 551 (1152)
Q Consensus 482 ~~c~~i~~g~~------~dviEIdaas~-~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---p 551 (1152)
.+|..+..... ..+....+... ...+.+..++..+... .....||||||||.|....+..|+.+++. .
T Consensus 822 INCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~--~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s 899 (1164)
T PTZ00112 822 INGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKD--NRNVSILIIDEIDYLITKTQKVLFTLFDWPTKI 899 (1164)
T ss_pred EeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcc--cccceEEEeehHhhhCccHHHHHHHHHHHhhcc
Confidence 23332211100 00000011111 1122333344433111 12345899999999987777777777764 3
Q ss_pred CCCEEEEEEcCCC---CcchHHHHccceE--EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHH---hcCCCHHHHH
Q 036794 552 PRRVVFILVSSSL---DALPHIIISRCQK--FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIAS---RSDGSLRDAE 623 (1152)
Q Consensus 552 p~~VifILaTN~~---dkL~~aL~SR~qv--I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe---~s~GDLR~Ai 623 (1152)
...++||+++|.. +.+.+.+.+|+.. +.|+|++.+++.++|..++......++++|++++|+ ...||+|.|+
T Consensus 900 ~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKAL 979 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKAL 979 (1164)
T ss_pred CCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHH
Confidence 4578899999864 3567788998874 899999999999999999986545699999999998 5679999999
Q ss_pred HHHHHHHHh--CCCCCHHHHHHHHhcc
Q 036794 624 MTLEQLSLL--GQRISVPLVQELVGLI 648 (1152)
Q Consensus 624 n~LEkLsLl--g~~IT~EdV~elVg~v 648 (1152)
++|..++.. +..|+.++|.+++...
T Consensus 980 DILRrAgEikegskVT~eHVrkAleei 1006 (1164)
T PTZ00112 980 QICRKAFENKRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred HHHHHHHhhcCCCccCHHHHHHHHHHH
Confidence 999998765 3358888888777544
|
|
| >PRK06893 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2e-15 Score=163.80 Aligned_cols=200 Identities=17% Similarity=0.272 Sum_probs=138.0
Q ss_pred CCCcCcccCcHH--HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 417 PRTFRDLVGQNL--VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 417 P~sFddLVGQe~--v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+.+|++++|++. +...+...... ...+.++||||+|||||++++++++++....... -
T Consensus 12 ~~~fd~f~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~-------------------~ 71 (229)
T PRK06893 12 DETLDNFYADNNLLLLDSLRKNFID-LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTA-------------------I 71 (229)
T ss_pred cccccccccCChHHHHHHHHHHhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCe-------------------E
Confidence 458999997553 23333333332 2334578999999999999999999875331100 0
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCC--CCEEEEEEcCC-CCc---
Q 036794 495 IKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAP--RRVVFILVSSS-LDA--- 566 (1152)
Q Consensus 495 viEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp--~~VifILaTN~-~dk--- 566 (1152)
++.+...... ..++++.+ .+..+|+|||++.+.. ..+..|+.+++... ...++|++++. +..
T Consensus 72 y~~~~~~~~~----~~~~~~~~------~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~ 141 (229)
T PRK06893 72 YIPLSKSQYF----SPAVLENL------EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSI 141 (229)
T ss_pred EeeHHHhhhh----hHHHHhhc------ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccc
Confidence 1111100000 11223322 3457999999998753 33446777666522 23445565554 332
Q ss_pred chHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH---h-CCCCCHH
Q 036794 567 LPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL---L-GQRISVP 639 (1152)
Q Consensus 567 L~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL---l-g~~IT~E 639 (1152)
..+.|.+|+. .+.+++|+.+++..+|++.+...++.++++++++|+.+++||+|.+.+.|+++.. . +..||.+
T Consensus 142 ~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it~~ 221 (229)
T PRK06893 142 KLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQRKLTIP 221 (229)
T ss_pred cchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcCCCCCHH
Confidence 3478999987 7999999999999999999999999999999999999999999999999998742 2 3469999
Q ss_pred HHHHHHh
Q 036794 640 LVQELVG 646 (1152)
Q Consensus 640 dV~elVg 646 (1152)
.|+++++
T Consensus 222 ~v~~~L~ 228 (229)
T PRK06893 222 FVKEILG 228 (229)
T ss_pred HHHHHhc
Confidence 9998875
|
|
| >CHL00181 cbbX CbbX; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-15 Score=170.75 Aligned_cols=189 Identities=17% Similarity=0.189 Sum_probs=137.1
Q ss_pred cCcccCcHHHHHHHHHHHHh----------C----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 420 FRDLVGQNLVAQALSNAVMR----------R----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~----------g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
+.+++|.+.+++.|.+.+.. | ..+..+||+||||||||++|+++|+.+.........+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~-------- 93 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGH-------- 93 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCc--------
Confidence 45899999988877655321 1 2344689999999999999999999875331111101
Q ss_pred cccCCCccceEEeCCCC----CC--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhh
Q 036794 486 SHDRGKSRNIKEVGPVG----NF--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDR 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas----~~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEe 550 (1152)
++++.... .. ....+..+++.+ .++||||||++.+ ..++++.|++.|++
T Consensus 94 ---------~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 94 ---------LLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred ---------eEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 22222100 00 112234444442 3479999999986 45678899999999
Q ss_pred CCCCEEEEEEcCCC--C---cchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cC
Q 036794 551 APRRVVFILVSSSL--D---ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------SD 616 (1152)
Q Consensus 551 pp~~VifILaTN~~--d---kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------s~ 616 (1152)
...+++||++++.. + .+.|.|.+||. .|.|++++.+++..++...+++.+..+++++...+..+ +.
T Consensus 158 ~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~ 237 (287)
T CHL00181 158 QRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLF 237 (287)
T ss_pred CCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCC
Confidence 88889888887632 2 23478999998 69999999999999999999999999999988777764 55
Q ss_pred CCHHHHHHHHHHHHHh
Q 036794 617 GSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 617 GDLR~Ain~LEkLsLl 632 (1152)
||.|.+.+.++++...
T Consensus 238 GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 238 ANARSVRNALDRARMR 253 (287)
T ss_pred ccHHHHHHHHHHHHHH
Confidence 9999999999987543
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.7e-15 Score=176.26 Aligned_cols=193 Identities=21% Similarity=0.258 Sum_probs=145.4
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|+||-|+++++..|+.++.. | ..+.++|||||||||||++|++||++..+.+....-
T Consensus 429 p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg------- 501 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG------- 501 (693)
T ss_pred CCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC-------
Confidence 345899999999999999988754 3 556799999999999999999999998876532210
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhh--
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDR-- 550 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEe-- 550 (1152)
++++. ..-.-+-..++++|..++..+. .|||+||+|.+..+ ..+.||.-|+.
T Consensus 502 ---------pEL~s--k~vGeSEr~ir~iF~kAR~~aP----~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e 566 (693)
T KOG0730|consen 502 ---------PELFS--KYVGESERAIREVFRKARQVAP----CIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE 566 (693)
T ss_pred ---------HHHHH--HhcCchHHHHHHHHHHHhhcCC----eEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc
Confidence 00110 1111234568999998876533 89999999988432 35566666665
Q ss_pred CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 036794 551 APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain~ 625 (1152)
...+|++|.+||.++.|+++|++ |+. .|.+++|+.+...++|+..+++ +.++++ .++.|++.++| +-+++.++
T Consensus 567 ~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk--mp~~~~vdl~~La~~T~g~SGAel~~l 644 (693)
T KOG0730|consen 567 ALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK--MPFSEDVDLEELAQATEGYSGAEIVAV 644 (693)
T ss_pred ccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc--CCCCccccHHHHHHHhccCChHHHHHH
Confidence 34689999999999999999999 676 5899999999999999987765 456666 68889998766 66677777
Q ss_pred HHHHHHh
Q 036794 626 LEQLSLL 632 (1152)
Q Consensus 626 LEkLsLl 632 (1152)
++.++.+
T Consensus 645 Cq~A~~~ 651 (693)
T KOG0730|consen 645 CQEAALL 651 (693)
T ss_pred HHHHHHH
Confidence 7776554
|
|
| >TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-15 Score=176.27 Aligned_cols=214 Identities=20% Similarity=0.215 Sum_probs=149.9
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
.+.....+|+||+|++.++..|..++.. ...+.++|||||||||||++|+++|.+++......
T Consensus 46 ~~~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i------ 119 (495)
T TIGR01241 46 NEEKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSI------ 119 (495)
T ss_pred cCCCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeec------
Confidence 3444456899999999998888776641 45566899999999999999999999876542111
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHH
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISK 546 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLk 546 (1152)
.+..+ .. .....+...++++++.+... .+.||||||+|.+.. ...+.|+.
T Consensus 120 --~~~~~--------~~--~~~g~~~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~ 183 (495)
T TIGR01241 120 --SGSDF--------VE--MFVGVGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLV 183 (495)
T ss_pred --cHHHH--------HH--HHhcccHHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHh
Confidence 00000 00 00112345677888776432 346999999998742 23455666
Q ss_pred HHhhC--CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHH
Q 036794 547 VVDRA--PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLR 620 (1152)
Q Consensus 547 lLEep--p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR 620 (1152)
.|+.. ...++||++||.++.++++|++ |+. .+.|+.|+.+++.++++..+....+. ++..+..++..+.| +.+
T Consensus 184 ~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sga 262 (495)
T TIGR01241 184 EMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGA 262 (495)
T ss_pred hhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHH
Confidence 66542 3468999999999999999987 555 59999999999999999888765443 33457788888776 667
Q ss_pred HHHHHHHHHHHh----C-CCCCHHHHHHHHhcc
Q 036794 621 DAEMTLEQLSLL----G-QRISVPLVQELVGLI 648 (1152)
Q Consensus 621 ~Ain~LEkLsLl----g-~~IT~EdV~elVg~v 648 (1152)
++.+++..+++. + ..|+.+++.+++...
T Consensus 263 dl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~ 295 (495)
T TIGR01241 263 DLANLLNEAALLAARKNKTEITMNDIEEAIDRV 295 (495)
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 777777765443 2 349999998887643
|
HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH. |
| >PRK00411 cdc6 cell division control protein 6; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.6e-14 Score=164.26 Aligned_cols=233 Identities=21% Similarity=0.294 Sum_probs=151.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..++...|.| +.++|.+..++.|...+.. +..+..++|+||||||||++++.+++.+........ + ...+|
T Consensus 20 ~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~--~-v~in~ 93 (394)
T PRK00411 20 EEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVV--Y-VYINC 93 (394)
T ss_pred hhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcE--E-EEEEC
Confidence 3355556665 5689999888888877644 344456899999999999999999998754321110 0 01111
Q ss_pred ccccCCC------ccceEE-eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhhCC-
Q 036794 485 ISHDRGK------SRNIKE-VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS----PDSWSAISKVVDRAP- 552 (1152)
Q Consensus 485 ~~i~~g~------~~dviE-Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls----~eaqnaLLklLEepp- 552 (1152)
....... ...+.. -.+......+++.+.+...... .+.+.||+|||+|.+. .+....|++.++..+
T Consensus 94 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~ 171 (394)
T PRK00411 94 QIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE--RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPG 171 (394)
T ss_pred CcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh--cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCC
Confidence 1110000 000000 0011112233333322222111 1345789999999986 345566666666543
Q ss_pred CCEEEEEEcCCCC---cchHHHHccce--EEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHHHHhc---CCCHHHH
Q 036794 553 RRVVFILVSSSLD---ALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLIASRS---DGSLRDA 622 (1152)
Q Consensus 553 ~~VifILaTN~~d---kL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelLAe~s---~GDLR~A 622 (1152)
.++.+|++++..+ .+.+.+.+++. .+.|++++.+++.++|...++.. ...+++++++.+++.+ .||+|.+
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 3788999998764 46666777764 68999999999999999988643 2358999999999986 8999999
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
+++|..++.. ...|+.++|.+++...
T Consensus 252 ~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 252 IDLLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999886544 2359999999888765
|
|
| >PF03215 Rad17: Rad17 cell cycle checkpoint protein | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.9e-15 Score=176.24 Aligned_cols=221 Identities=19% Similarity=0.287 Sum_probs=149.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC----CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK----VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr----i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
..++|++||+|++.+||+.+..-++.++.|+...- ....+||+||+|+|||+++++||++++....++..|...-.
T Consensus 5 ~~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~ 84 (519)
T PF03215_consen 5 ESEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE 84 (519)
T ss_pred ccCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc
Confidence 46799999999999999999999999999987632 23478999999999999999999999987766655543211
Q ss_pred ccccccCCCccceEEe-CCCC--CCCHHHHHHH-HHHHhhCC-------CCCCceEEEEeCCCCCCHH----HHHHHHHH
Q 036794 483 SCISHDRGKSRNIKEV-GPVG--NFDFESILDL-LDNMVTSR-------PPSQYRIFVFDDCDTLSPD----SWSAISKV 547 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEI-daas--~~~vdeIreL-le~a~~~P-------~~a~~kVVIIDEID~Ls~e----aqnaLLkl 547 (1152)
.-. ...++... +... ....+.+.++ +....+.. .....+||+|+|+..+... ..+.|.++
T Consensus 85 ~~~-----~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~ 159 (519)
T PF03215_consen 85 SDN-----QEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQY 159 (519)
T ss_pred ccc-----ccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHH
Confidence 000 00000000 0000 0011222222 22222211 1246889999999876332 34466666
Q ss_pred HhhCCC-CEEEEEEcC-------CC--------CcchHHHHcc--ceEEEecCCChhHHHHHHHHHHHHc-----CC-CC
Q 036794 548 VDRAPR-RVVFILVSS-------SL--------DALPHIIISR--CQKFFFPKMKDADIIYTLQWIASKE-----GI-EI 603 (1152)
Q Consensus 548 LEepp~-~VifILaTN-------~~--------dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~~iakke-----Gl-~I 603 (1152)
+..... .++||++-. .. ..+++.|+.. +..|.|+|+...-+.+.|..++..+ +. ..
T Consensus 160 l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~~~~ 239 (519)
T PF03215_consen 160 LRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGKNKV 239 (519)
T ss_pred HHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCCccC
Confidence 666555 777777711 11 1366777664 5579999999999999999999987 32 23
Q ss_pred C--HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 604 D--KDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 604 d--~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
. .+.++.|+..+.||+|.|++.||.++..
T Consensus 240 p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~~ 270 (519)
T PF03215_consen 240 PDKQSVLDSIAESSNGDIRSAINNLQFWCLK 270 (519)
T ss_pred CChHHHHHHHHHhcCchHHHHHHHHHHHhcC
Confidence 2 3469999999999999999999999883
|
|
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=172.25 Aligned_cols=210 Identities=15% Similarity=0.134 Sum_probs=148.4
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh--------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR--------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~--------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|++|.|.+.+++.|...... | ..+.++|||||||||||++|+++|++++......
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l------------- 290 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRL------------- 290 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEE-------------
Confidence 34799999999988888753211 2 4567899999999999999999999987542211
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhhCCCCE
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVDRAPRRV 555 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLEepp~~V 555 (1152)
..+. ++ +.........+++++..+... .+.||||||+|.+.. ...+.|+..|++....+
T Consensus 291 ~~~~---l~--~~~vGese~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V 361 (489)
T CHL00195 291 DVGK---LF--GGIVGESESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPV 361 (489)
T ss_pred EhHH---hc--ccccChHHHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCce
Confidence 0000 00 000111234577777765432 347999999997632 13457788888877889
Q ss_pred EEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCC-CHHHHHHHHHHHH
Q 036794 556 VFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIE-IDKDALKLIASRSDG-SLRDAEMTLEQLS 630 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~-Id~dALelLAe~s~G-DLR~Ain~LEkLs 630 (1152)
+||++||+++.+++++++ |+. .|.|+.|+.++..++++.++.+.+.. .++..++.|+..+.| +..++.+.+..++
T Consensus 362 ~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~ 441 (489)
T CHL00195 362 FVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAM 441 (489)
T ss_pred EEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 999999999999999987 776 58899999999999999988876533 345567888888766 6666666666554
Q ss_pred Hh----CCCCCHHHHHHHHhcc
Q 036794 631 LL----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 631 Ll----g~~IT~EdV~elVg~v 648 (1152)
.. +..+|.+++..++...
T Consensus 442 ~~A~~~~~~lt~~dl~~a~~~~ 463 (489)
T CHL00195 442 YIAFYEKREFTTDDILLALKQF 463 (489)
T ss_pred HHHHHcCCCcCHHHHHHHHHhc
Confidence 32 3458888877776543
|
|
| >CHL00176 ftsH cell division protein; Validated | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.9e-14 Score=173.58 Aligned_cols=207 Identities=20% Similarity=0.248 Sum_probs=147.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|+|++|.+++++.|...+.. ...+.++||+||||||||++|+++|.+++.+.... .|..
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~i--------s~s~ 251 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSI--------SGSE 251 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeec--------cHHH
Confidence 4799999999988888766532 23456899999999999999999999876542111 1111
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------H---HHHHHHHHHhh--
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------D---SWSAISKVVDR-- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------e---aqnaLLklLEe-- 550 (1152)
+. +. ....+...+++++..+.. ..+.||||||+|.+.. . ..+.|+..++.
T Consensus 252 f~--------~~--~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~ 317 (638)
T CHL00176 252 FV--------EM--FVGVGAARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFK 317 (638)
T ss_pred HH--------HH--hhhhhHHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhcccc
Confidence 10 00 001234567777777643 3347999999998832 2 23445555544
Q ss_pred CCCCEEEEEEcCCCCcchHHHHcc--ce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHH
Q 036794 551 APRRVVFILVSSSLDALPHIIISR--CQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTL 626 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~L 626 (1152)
...+++||++||.++.++++++++ +. .+.|+.|+.+++.++|+.++....+ .++..+..|+..+.| +.+++.+++
T Consensus 318 ~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t~G~sgaDL~~lv 396 (638)
T CHL00176 318 GNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRTPGFSGADLANLL 396 (638)
T ss_pred CCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcCCCCCHHHHHHHH
Confidence 345789999999999999999874 43 6999999999999999998887433 345578899999888 888888888
Q ss_pred HHHHHh----C-CCCCHHHHHHHHhc
Q 036794 627 EQLSLL----G-QRISVPLVQELVGL 647 (1152)
Q Consensus 627 EkLsLl----g-~~IT~EdV~elVg~ 647 (1152)
..+++. + ..||.+++.+++..
T Consensus 397 neAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 397 NEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 876544 2 34899998888754
|
|
| >TIGR00362 DnaA chromosomal replication initiator protein DnaA | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.2e-14 Score=163.86 Aligned_cols=206 Identities=21% Similarity=0.259 Sum_probs=141.6
Q ss_pred hhhhhCCCCcCcc-cCcH--HHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDL-VGQN--LVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddL-VGQe--~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+..+| +|+++ +|.+ .+...+...... +...+.++||||+|+|||++++++++++.......
T Consensus 103 l~~~~---tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~------------ 167 (405)
T TIGR00362 103 LNPKY---TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNA------------ 167 (405)
T ss_pred CCCCC---cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCC------------
Confidence 34455 58884 4643 344555555443 22345689999999999999999999886431111
Q ss_pred ccCCCccceEEeCCC----------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhC-CC
Q 036794 487 HDRGKSRNIKEVGPV----------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRA-PR 553 (1152)
Q Consensus 487 i~~g~~~dviEIdaa----------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEep-p~ 553 (1152)
.++.+... .....+.+ .+.+ ....+|+|||+|.+... .+..|+.+++.. ..
T Consensus 168 -------~v~yi~~~~~~~~~~~~~~~~~~~~~---~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~ 231 (405)
T TIGR00362 168 -------KVVYVSSEKFTNDFVNALRNNKMEEF---KEKY------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHEN 231 (405)
T ss_pred -------cEEEEEHHHHHHHHHHHHHcCCHHHH---HHHH------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHC
Confidence 01122110 00011111 1222 12369999999998543 456677777652 12
Q ss_pred CEEEEEEcCCC-C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 554 RVVFILVSSSL-D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 554 ~VifILaTN~~-d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
+..+|++++.. . .+.+.|.+|+. .+.|++|+.+++..+|+..++..++.++++++++|+..+.||+|.+...|
T Consensus 232 ~~~iiits~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 232 GKQIVLTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred CCCEEEecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 34466666642 2 36677999986 69999999999999999999999999999999999999999999999998
Q ss_pred HHHHHh----CCCCCHHHHHHHHhc
Q 036794 627 EQLSLL----GQRISVPLVQELVGL 647 (1152)
Q Consensus 627 EkLsLl----g~~IT~EdV~elVg~ 647 (1152)
.++..+ +..||.+.+.+++..
T Consensus 312 ~~l~~~a~~~~~~it~~~~~~~L~~ 336 (405)
T TIGR00362 312 NRLLAYASLTGKPITLELAKEALKD 336 (405)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHH
Confidence 887543 457999999888864
|
DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006). |
| >PRK06620 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.59 E-value=4e-14 Score=152.50 Aligned_cols=190 Identities=16% Similarity=0.261 Sum_probs=133.8
Q ss_pred hhhhhCCCCcCccc-C--cHHHHHHHHHHHHhCC-CC--cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 411 LTQKYMPRTFRDLV-G--QNLVAQALSNAVMRRK-VG--LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 411 l~eKyRP~sFddLV-G--Qe~v~q~Lk~aL~~gr-i~--~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
+..+| +|+++| | +..+...+.++..... .+ ..++||||+|+|||++++++++..+...
T Consensus 9 ~~~~~---tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~------------- 72 (214)
T PRK06620 9 TSSKY---HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI------------- 72 (214)
T ss_pred CCCCC---CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCCEE-------------
Confidence 34455 588865 4 4567788888776422 12 4589999999999999999877643210
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+.. ... .+ +.. ....+++|||+|.+.....-.++..+.+. ...++|.++..+
T Consensus 73 -------------~~~-~~~-~~---~~~---------~~~d~lliDdi~~~~~~~lf~l~N~~~e~-g~~ilits~~~p 124 (214)
T PRK06620 73 -------------IKD-IFF-NE---EIL---------EKYNAFIIEDIENWQEPALLHIFNIINEK-QKYLLLTSSDKS 124 (214)
T ss_pred -------------cch-hhh-ch---hHH---------hcCCEEEEeccccchHHHHHHHHHHHHhc-CCEEEEEcCCCc
Confidence 000 000 00 010 23369999999977544433444444443 234444444344
Q ss_pred C--cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCC
Q 036794 565 D--ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQR 635 (1152)
Q Consensus 565 d--kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~~ 635 (1152)
. .+ +.|+||+. ++.+++|+.+++..++++.+...|+.++++++++|+.+++||+|.+++.|+.+... ...
T Consensus 125 ~~l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~ 203 (214)
T PRK06620 125 RNFTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRK 203 (214)
T ss_pred cccch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 3 25 78999998 89999999999999999999989999999999999999999999999999997432 345
Q ss_pred CCHHHHHHHH
Q 036794 636 ISVPLVQELV 645 (1152)
Q Consensus 636 IT~EdV~elV 645 (1152)
||.+.+++++
T Consensus 204 it~~~~~~~l 213 (214)
T PRK06620 204 ITISLVKEVL 213 (214)
T ss_pred CCHHHHHHHh
Confidence 9999998875
|
|
| >PRK03992 proteasome-activating nucleotidase; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=5.1e-14 Score=164.08 Aligned_cols=208 Identities=16% Similarity=0.181 Sum_probs=142.7
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|++|.|.+..++.|...+.. ...+.++|||||||||||++|+++|+.++...... .|.
T Consensus 128 ~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v--------~~~ 199 (389)
T PRK03992 128 VTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRV--------VGS 199 (389)
T ss_pred CCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEe--------ehH
Confidence 3689999999999999887643 14456899999999999999999999987542111 011
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
.+. ..........++.+++.+.. ..+.||||||+|.+. .+.+..|+.+|.+
T Consensus 200 ~l~----------~~~~g~~~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~ 265 (389)
T PRK03992 200 ELV----------QKFIGEGARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF 265 (389)
T ss_pred HHh----------HhhccchHHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc
Confidence 100 00001123345666665543 234799999999983 3345566666644
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++ |+. .|.|++|+.++..++++.++....+.- +..+..|+..+.| +.+++..+
T Consensus 266 ~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~-~~~~~~la~~t~g~sgadl~~l 344 (389)
T PRK03992 266 DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLAD-DVDLEELAELTEGASGADLKAI 344 (389)
T ss_pred CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCC-cCCHHHHHHHcCCCCHHHHHHH
Confidence 23589999999999999999986 665 599999999999999998876544421 1236667777666 55666666
Q ss_pred HHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 626 LEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 626 LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
+..+++. ...|+.+|+.+++..+
T Consensus 345 ~~eA~~~a~~~~~~~i~~~d~~~A~~~~ 372 (389)
T PRK03992 345 CTEAGMFAIRDDRTEVTMEDFLKAIEKV 372 (389)
T ss_pred HHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 6665443 2358888888777654
|
|
| >PRK00149 dnaA chromosomal replication initiation protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-13 Score=163.44 Aligned_cols=205 Identities=19% Similarity=0.229 Sum_probs=141.2
Q ss_pred CcCccc-C--cHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|++++ | +..+...+..+... +...+.++||||+|+|||++++++++++....+.. .
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~-------------------~ 180 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNA-------------------K 180 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-------------------e
Confidence 688865 5 33456666665554 23335689999999999999999999986432111 0
Q ss_pred eEEeCCCCCCC--HH-----HHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCC
Q 036794 495 IKEVGPVGNFD--FE-----SILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSL 564 (1152)
Q Consensus 495 viEIdaas~~~--vd-----eIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~ 564 (1152)
+..+....... .. ...++.+.+ ....+|+|||+|.+.. ..+..|+.+++.. .....+|++++.+
T Consensus 181 v~yi~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~ 254 (450)
T PRK00149 181 VVYVTSEKFTNDFVNALRNNTMEEFKEKY------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRP 254 (450)
T ss_pred EEEEEHHHHHHHHHHHHHcCcHHHHHHHH------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCC
Confidence 22221100000 00 011122222 2346999999999854 2456677666542 1223355666543
Q ss_pred -C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----C
Q 036794 565 -D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----G 633 (1152)
Q Consensus 565 -d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g 633 (1152)
. .+.+.|.+|+. .+.|.+|+.+++..+|+..+...++.++++++++|+..+.||+|.++..|.++..+ +
T Consensus 255 p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~~~~~~ 334 (450)
T PRK00149 255 PKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAYASLTG 334 (450)
T ss_pred HHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHHHHhhC
Confidence 2 36678999985 79999999999999999999999999999999999999999999999999988544 4
Q ss_pred CCCCHHHHHHHHhcc
Q 036794 634 QRISVPLVQELVGLI 648 (1152)
Q Consensus 634 ~~IT~EdV~elVg~v 648 (1152)
..||.+.+.+++...
T Consensus 335 ~~it~~~~~~~l~~~ 349 (450)
T PRK00149 335 KPITLELAKEALKDL 349 (450)
T ss_pred CCCCHHHHHHHHHHh
Confidence 569999999988753
|
|
| >PRK05642 DNA replication initiation factor; Validated | Back alignment and domain information |
|---|
Probab=99.57 E-value=8.3e-14 Score=151.77 Aligned_cols=199 Identities=21% Similarity=0.280 Sum_probs=137.1
Q ss_pred CcCccc-CcH-HHHHHHHHHHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-GQN-LVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-GQe-~v~q~Lk~aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|++++ |.. .++..+..+... +.....++|+||+|+|||++++++++++..... .
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~---------------------~ 75 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGE---------------------P 75 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCC---------------------c
Confidence 699987 433 344445444332 122356889999999999999999987642210 0
Q ss_pred eEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCC-CCEEEEEEcCC-CC---cc
Q 036794 495 IKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAP-RRVVFILVSSS-LD---AL 567 (1152)
Q Consensus 495 viEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp-~~VifILaTN~-~d---kL 567 (1152)
+..+....-. .....+++.+. ...+|+||+++.+.. ..+..|+.+++... .+..+|++++. +. ..
T Consensus 76 v~y~~~~~~~--~~~~~~~~~~~------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~ 147 (234)
T PRK05642 76 AVYLPLAELL--DRGPELLDNLE------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIK 147 (234)
T ss_pred EEEeeHHHHH--hhhHHHHHhhh------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCcc
Confidence 2222110000 01122333321 236999999998753 34567888877632 23455666553 32 34
Q ss_pred hHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---Hh-CCCCCHHH
Q 036794 568 PHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS---LL-GQRISVPL 640 (1152)
Q Consensus 568 ~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs---Ll-g~~IT~Ed 640 (1152)
.+.|.||+ ..+.+.+|+.+++..+++..+...++.++++++++|+.+++||+|.+++.|+.+. +. +..||...
T Consensus 148 ~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~it~~~ 227 (234)
T PRK05642 148 LPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRKLTIPF 227 (234)
T ss_pred CccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCcCCHHH
Confidence 67799999 6899999999999999998888889999999999999999999999999999874 33 35699999
Q ss_pred HHHHHh
Q 036794 641 VQELVG 646 (1152)
Q Consensus 641 V~elVg 646 (1152)
++++++
T Consensus 228 ~~~~L~ 233 (234)
T PRK05642 228 LKETLG 233 (234)
T ss_pred HHHHhc
Confidence 998875
|
|
| >PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-13 Score=160.86 Aligned_cols=208 Identities=19% Similarity=0.188 Sum_probs=141.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|.+++.. | ..+.++|||||||||||++|+++|+.++..+... .+.
T Consensus 142 v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i--------~~s 213 (398)
T PTZ00454 142 VTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRV--------VGS 213 (398)
T ss_pred CCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEE--------ehH
Confidence 4799999999999999887752 1 3456899999999999999999999876542111 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHH---HHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAI---SKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaL---LklLEe- 550 (1152)
. +. ......+...+++++..+.. ..+.||||||+|.+.. ..+..| +..++.
T Consensus 214 ~--------l~--~k~~ge~~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~ 279 (398)
T PTZ00454 214 E--------FV--QKYLGEGPRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGF 279 (398)
T ss_pred H--------HH--HHhcchhHHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhcc
Confidence 0 00 00001123346666665532 3457999999998731 233344 444443
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++ |+. .|.|+.|+..+...+++.++...++.-+ -.+..++..+.| +..++.++
T Consensus 280 ~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-vd~~~la~~t~g~sgaDI~~l 358 (398)
T PTZ00454 280 DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-VDLEDFVSRPEKISAADIAAI 358 (398)
T ss_pred CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-cCHHHHHHHcCCCCHHHHHHH
Confidence 33589999999999999999887 665 5999999999999999988876655422 236667777665 67777777
Q ss_pred HHHHHHh---C--CCCCHHHHHHHHhcc
Q 036794 626 LEQLSLL---G--QRISVPLVQELVGLI 648 (1152)
Q Consensus 626 LEkLsLl---g--~~IT~EdV~elVg~v 648 (1152)
+..+.+. . ..|+.+|+.+++..+
T Consensus 359 ~~eA~~~A~r~~~~~i~~~df~~A~~~v 386 (398)
T PTZ00454 359 CQEAGMQAVRKNRYVILPKDFEKGYKTV 386 (398)
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHHH
Confidence 7776543 2 248888887776543
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.3e-14 Score=173.57 Aligned_cols=220 Identities=16% Similarity=0.163 Sum_probs=161.2
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++.||..+++++|+++.+..+...+......+ +||+||||||||++|+.+|+.+.....+.. .
T Consensus 169 ~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n-~lL~G~pG~GKT~l~~~la~~~~~~~~p~~----l------- 236 (731)
T TIGR02639 169 TVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIAEGLALRIAEGKVPEN----L------- 236 (731)
T ss_pred hhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCc-eEEECCCCCCHHHHHHHHHHHHHhCCCchh----h-------
Confidence 4578889999999999999999999888887766554 789999999999999999998753321110 0
Q ss_pred cCCCccceEEeCCC------CCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPV------GNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaa------s~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLEe 550 (1152)
....++.++.. ... . ...++.+++.+... ...||||||+|.+. .++++.|+..|+.
T Consensus 237 ---~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~ 309 (731)
T TIGR02639 237 ---KNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSS 309 (731)
T ss_pred ---cCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhC
Confidence 00112333210 111 1 24567777766432 35799999999884 2356778888875
Q ss_pred CCCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC---
Q 036794 551 APRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS--- 618 (1152)
Q Consensus 551 pp~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD--- 618 (1152)
..+.+|.+||..+ ..+++|.+||+.|.|++|+.+++..+|+..... .++.++++++..++..+..-
T Consensus 310 --g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~ 387 (731)
T TIGR02639 310 --GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYIND 387 (731)
T ss_pred --CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccccc
Confidence 6799999998632 368899999999999999999999999976654 46789999999999886542
Q ss_pred ---HHHHHHHHHHHHHh---C------CCCCHHHHHHHHhcc
Q 036794 619 ---LRDAEMTLEQLSLL---G------QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 ---LR~Ain~LEkLsLl---g------~~IT~EdV~elVg~v 648 (1152)
.+.++.+|+.++.. . ..|+.++|.+++...
T Consensus 388 r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 388 RFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred ccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 56788888886542 1 138888888887653
|
|
| >KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.56 E-value=8.9e-14 Score=169.64 Aligned_cols=209 Identities=17% Similarity=0.181 Sum_probs=155.0
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+.+|+|+.|.+++++.|.+.+.. .++|.++||+||||||||.+|+|+|.+.+-++...
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~sv---------- 375 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSV---------- 375 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeee----------
Confidence 346899999999999999887753 68889999999999999999999999887653211
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------H---HHHHHHHHHh
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------D---SWSAISKVVD 549 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------e---aqnaLLklLE 549 (1152)
+..+++|+- ...+...+++++..++.. .+.+|||||+|.+.. + .+|.||--|+
T Consensus 376 ------SGSEFvE~~--~g~~asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emD 443 (774)
T KOG0731|consen 376 ------SGSEFVEMF--VGVGASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMD 443 (774)
T ss_pred ------chHHHHHHh--cccchHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhc
Confidence 112233332 224467899999887543 347999999998732 1 2444544444
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ....|+|+.+||.++.|+++|++-+. .|....|+......++..++....+..++..+..|+..++| .-.++.
T Consensus 444 gf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~ 523 (774)
T KOG0731|consen 444 GFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA 523 (774)
T ss_pred CCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH
Confidence 4 44679999999999999999998554 48889999999999999888877766566666679999877 445666
Q ss_pred HHHHHHHHhC-----CCCCHHHHHHHHh
Q 036794 624 MTLEQLSLLG-----QRISVPLVQELVG 646 (1152)
Q Consensus 624 n~LEkLsLlg-----~~IT~EdV~elVg 646 (1152)
|++..+++.+ ..|+..++.+++.
T Consensus 524 n~~neaa~~a~r~~~~~i~~~~~~~a~~ 551 (774)
T KOG0731|consen 524 NLCNEAALLAARKGLREIGTKDLEYAIE 551 (774)
T ss_pred hhhhHHHHHHHHhccCccchhhHHHHHH
Confidence 7777765552 3477777777765
|
|
| >TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.3e-14 Score=168.07 Aligned_cols=215 Identities=13% Similarity=0.178 Sum_probs=142.0
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
+|++|+|++..++.+...+.. ......+||+|++||||+++|++|+....... .|+ ...+|..+..... ..++
T Consensus 210 ~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~----~pf-v~inC~~l~e~lleseLF 284 (526)
T TIGR02329 210 RLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRRD----FPF-VAINCGAIAESLLEAELF 284 (526)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCC----CCE-EEeccccCChhHHHHHhc
Confidence 599999999999988888754 55666799999999999999999998653322 121 1223333321000 0000
Q ss_pred EeCCCCCCCHH--HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCC
Q 036794 497 EVGPVGNFDFE--SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSS 563 (1152)
Q Consensus 497 EIdaas~~~vd--eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~ 563 (1152)
........+.. .-..+++ .+..++|||||++.|+...|..|+++|++. +.++.+|++|+.
T Consensus 285 G~~~gaftga~~~~~~Gl~e-------~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~ 357 (526)
T TIGR02329 285 GYEEGAFTGARRGGRTGLIE-------AAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHC 357 (526)
T ss_pred CCcccccccccccccccchh-------hcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCC
Confidence 00000000000 0001111 155789999999999999999999999872 246689998874
Q ss_pred C-------CcchHHHHccceE--EEecCCCh--hHHHHHHHHH----HHHcCCCCCHHHHHH-------HHHh-cCCCHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWI----ASKEGIEIDKDALKL-------IASR-SDGSLR 620 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~i----akkeGl~Id~dALel-------LAe~-s~GDLR 620 (1152)
. ..+.+.|..|+.. |.+||+.+ +|+..++..+ +...++.+++++++. |..+ |+||+|
T Consensus 358 ~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~y~WPGNvr 437 (526)
T TIGR02329 358 ALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQRYPWPGNVR 437 (526)
T ss_pred CHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHhCCCCchHH
Confidence 3 2466678888764 66666654 3555444443 344567899999988 8878 999999
Q ss_pred HHHHHHHHHHHhC-----CCCCHHHHHHHH
Q 036794 621 DAEMTLEQLSLLG-----QRISVPLVQELV 645 (1152)
Q Consensus 621 ~Ain~LEkLsLlg-----~~IT~EdV~elV 645 (1152)
++.|.+++++... ..|+.+++..+.
T Consensus 438 EL~nvier~~i~~~~~~~~~I~~~~l~~~~ 467 (526)
T TIGR02329 438 ELRNLVERLALELSAMPAGALTPDVLRALA 467 (526)
T ss_pred HHHHHHHHHHHhcccCCCCccCHHHhhhhc
Confidence 9999999987652 468888876543
|
At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR. |
| >PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.2e-14 Score=165.73 Aligned_cols=213 Identities=18% Similarity=0.210 Sum_probs=142.2
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
.+++.+.+|+||.|.+..++.|.+++.. -..+.++|||||||||||++|+++|+.+...+...
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V----- 248 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRV----- 248 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEE-----
Confidence 4466668999999999999999988753 13456899999999999999999999876432110
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVV 548 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklL 548 (1152)
.... +. ......+...+++++..+.. ..+.||||||+|.+.. +.+..|+.+|
T Consensus 249 --------~~se---L~--~k~~Ge~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL 311 (438)
T PTZ00361 249 --------VGSE---LI--QKYLGDGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELL 311 (438)
T ss_pred --------ecch---hh--hhhcchHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHH
Confidence 0000 00 00001123346666665532 3457999999987631 2334444444
Q ss_pred hh-----CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-C
Q 036794 549 DR-----APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-S 618 (1152)
Q Consensus 549 Ee-----pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-D 618 (1152)
.. ...++.||++||.++.+++++++ |+. .|.|+.|+..++.++++.++.+..+ .++ .+..++..+.| +
T Consensus 312 ~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l--~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 312 NQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL--AEDVDLEEFIMAKDELS 389 (438)
T ss_pred HHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC--CcCcCHHHHHHhcCCCC
Confidence 33 24589999999999999999876 665 5999999999999999988776544 322 24555555443 5
Q ss_pred HHHHHHHHHHHHHh---C--CCCCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLL---G--QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLl---g--~~IT~EdV~elVg~v 648 (1152)
..++.+++..+++. . ..|+.+|+.+++..+
T Consensus 390 gAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v 424 (438)
T PTZ00361 390 GADIKAICTEAGLLALRERRMKVTQADFRKAKEKV 424 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHH
Confidence 55555555555433 2 358999988877654
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-14 Score=176.81 Aligned_cols=215 Identities=21% Similarity=0.351 Sum_probs=162.3
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC--------cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG--------LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~--------~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++.+........+.+... ..++||++++..+.++|+..+.+ ..+||.||+|+|||.+|++||..+
T Consensus 470 Pv~~l~~~e~~kll~le~~L~----~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~L 545 (786)
T COG0542 470 PVAKLLEDEKEKLLNLERRLK----KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEAL 545 (786)
T ss_pred ChhhhchhhHHHHHHHHHHHh----cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHh
Confidence 455555555555555555653 67999999999999999874332 379999999999999999999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEEe-----CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-----GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviEI-----daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqn 542 (1152)
+... .....++++.+++-..+ .|++++++++-..+.+.++..|+ .||++|||++.+++.+|
T Consensus 546 fg~e----------~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~Py----SViLlDEIEKAHpdV~n 611 (786)
T COG0542 546 FGDE----------QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPY----SVILLDEIEKAHPDVFN 611 (786)
T ss_pred cCCC----------ccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCC----eEEEechhhhcCHHHHH
Confidence 8643 22355666665544433 26688899998888888887765 89999999999999999
Q ss_pred HHHHHHhhC-----------CCCEEEEEEcCCC----------------------------CcchHHHHccce-EEEecC
Q 036794 543 AISKVVDRA-----------PRRVVFILVSSSL----------------------------DALPHIIISRCQ-KFFFPK 582 (1152)
Q Consensus 543 aLLklLEep-----------p~~VifILaTN~~----------------------------dkL~~aL~SR~q-vI~F~~ 582 (1152)
.||++|++. -.+++|||++|-- ..+.|.++.|+. +|.|.+
T Consensus 612 ilLQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~ 691 (786)
T COG0542 612 LLLQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNP 691 (786)
T ss_pred HHHHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccC
Confidence 999999982 2588999998720 015667888988 899999
Q ss_pred CChhHHHHHHHHHHH-------HcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHH
Q 036794 583 MKDADIIYTLQWIAS-------KEGI--EIDKDALKLIASRS---DGSLRDAEMTLEQ 628 (1152)
Q Consensus 583 p~~~EI~eiL~~iak-------keGl--~Id~dALelLAe~s---~GDLR~Ain~LEk 628 (1152)
++.+++.+++...+. ..++ .+++++.++|++.. ....|-+...|++
T Consensus 692 L~~~~l~~Iv~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~ 749 (786)
T COG0542 692 LSKEVLERIVDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRAIQQ 749 (786)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHHHHH
Confidence 999988877655443 3344 58999999999983 2345666666655
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.55 E-value=5.8e-14 Score=177.32 Aligned_cols=221 Identities=15% Similarity=0.239 Sum_probs=152.5
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC-------CCC-cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR-------KVG-LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g-------ri~-~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++..........+.+... ..|+||+.++..+.+++... ..+ ..+||+||+|+|||.+|+++|+.+
T Consensus 545 p~~~~~~~e~~~l~~l~~~L~----~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 545 PVGRMVRDEIEAVLSLPDRLA----ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CchhhchhHHHHHHHHHHHhc----CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 444454444444555555554 67999999999999988652 112 258999999999999999999998
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKV 547 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLkl 547 (1152)
..... +..+..|..+..........-.+.++.+.++-..+.+.+...| +.||+|||++.++++.++.|+++
T Consensus 621 ~~~~~-----~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p----~svvllDEieka~~~v~~~Llq~ 691 (852)
T TIGR03345 621 YGGEQ-----NLITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKP----YSVVLLDEVEKAHPDVLELFYQV 691 (852)
T ss_pred hCCCc-----ceEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCC----CcEEEEechhhcCHHHHHHHHHH
Confidence 64311 1111122222111111011112334455444334555555444 47999999999999999999999
Q ss_pred HhhCC-----------CCEEEEEEcCC-----------CC------------------cchHHHHccceEEEecCCChhH
Q 036794 548 VDRAP-----------RRVVFILVSSS-----------LD------------------ALPHIIISRCQKFFFPKMKDAD 587 (1152)
Q Consensus 548 LEepp-----------~~VifILaTN~-----------~d------------------kL~~aL~SR~qvI~F~~p~~~E 587 (1152)
|++.. .+++||++||- .. .+.|++++|+.+|.|.+++.++
T Consensus 692 ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~ 771 (852)
T TIGR03345 692 FDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDV 771 (852)
T ss_pred hhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHH
Confidence 99843 68899999872 00 1567799999999999999999
Q ss_pred HHHHHHHHHHH--------cC--CCCCHHHHHHHHHhcCC---CHHHHHHHHHHH
Q 036794 588 IIYTLQWIASK--------EG--IEIDKDALKLIASRSDG---SLRDAEMTLEQL 629 (1152)
Q Consensus 588 I~eiL~~iakk--------eG--l~Id~dALelLAe~s~G---DLR~Ain~LEkL 629 (1152)
+..++...+.. .| +.++++++++|+..+.+ +.|.+.+.|++.
T Consensus 772 l~~Iv~~~L~~l~~rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~ 826 (852)
T TIGR03345 772 LAAIVRLKLDRIARRLKENHGAELVYSEALVEHIVARCTEVESGARNIDAILNQT 826 (852)
T ss_pred HHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHH
Confidence 99887665532 14 46899999999999766 799999998874
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.5e-13 Score=165.48 Aligned_cols=217 Identities=14% Similarity=0.192 Sum_probs=138.3
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcc--c--CCCCCCCCCCCCccccccCCCc-
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNC--Q--SLEQPKPCGFCNSCISHDRGKS- 492 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~--~--~~e~~epcg~c~~c~~i~~g~~- 492 (1152)
.|++|+|++..++.+...+.. ......+||+|++||||+.+|++|+..+.. . ......|+ ...+|..+.....
T Consensus 217 ~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pf-v~inCaal~e~lle 295 (538)
T PRK15424 217 VLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPF-VAVNCGAIAESLLE 295 (538)
T ss_pred chhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCe-EEeecccCChhhHH
Confidence 599999999999999888754 556667999999999999999999987221 0 00111222 1223333211000
Q ss_pred cceEEeCCCCCCCHH--HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEE
Q 036794 493 RNIKEVGPVGNFDFE--SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFIL 559 (1152)
Q Consensus 493 ~dviEIdaas~~~vd--eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifIL 559 (1152)
..++........+.. .-..+++ .+.+++||||||+.|+...|..|+++|++. +.++++|+
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e-------~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIa 368 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFE-------IAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVIS 368 (538)
T ss_pred HHhcCCccccccCccccccCCchh-------ccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEE
Confidence 000000000000000 0000111 256789999999999999999999999872 34678999
Q ss_pred EcCCC-C------cchHHHHccceE--EEecCCCh--hHHHHHHHHHHH----HcCCCCCHHHH-------HHHHHh-cC
Q 036794 560 VSSSL-D------ALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIAS----KEGIEIDKDAL-------KLIASR-SD 616 (1152)
Q Consensus 560 aTN~~-d------kL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~iak----keGl~Id~dAL-------elLAe~-s~ 616 (1152)
+|+.. . .+.+.|..|+.. |.+||+.+ +|+..++..+++ ..+..++++++ +.|..| |+
T Consensus 369 at~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~a~~~L~~y~WP 448 (538)
T PRK15424 369 ATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQQCETLLLHYDWP 448 (538)
T ss_pred ecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhHHHHHHHHhCCCC
Confidence 98743 1 356678888875 55555543 355555555444 35677888776 567777 99
Q ss_pred CCHHHHHHHHHHHHHhC-----CCCCHHHHHH
Q 036794 617 GSLRDAEMTLEQLSLLG-----QRISVPLVQE 643 (1152)
Q Consensus 617 GDLR~Ain~LEkLsLlg-----~~IT~EdV~e 643 (1152)
||+|++.|.+++++.+. ..|+.+++.+
T Consensus 449 GNvREL~nvier~~i~~~~~~~~~i~~~~l~~ 480 (538)
T PRK15424 449 GNVRELRNLMERLALFLSVEPTPDLTPQFLQL 480 (538)
T ss_pred chHHHHHHHHHHHHHhcCCCCcCccCHHHhhh
Confidence 99999999999988762 2477776643
|
|
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-14 Score=176.03 Aligned_cols=216 Identities=17% Similarity=0.286 Sum_probs=150.7
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC--------CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV--------GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri--------~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+...+..........+.+... ..|+||+.++..|..++...+. ...|||+||+|+|||++|++||+.+
T Consensus 488 p~~~~~~~~~~~l~~l~~~L~----~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 488 PVNKLTKSESEKLLHMEETLH----KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CchhhchhHHHHHHHHHHHhc----CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 444444444444445555553 6799999999999999875322 2469999999999999999999999
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEE----e-CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKE----V-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviE----I-daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqn 542 (1152)
++... +| ..++++.+.+... + .+.++.+.++...+.+.+...|+ .||||||+|+++++.++
T Consensus 564 ~~~~~----~~------~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~----~VvllDeieka~~~v~~ 629 (821)
T CHL00095 564 FGSED----AM------IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPY----TVVLFDEIEKAHPDIFN 629 (821)
T ss_pred cCCcc----ce------EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCC----eEEEECChhhCCHHHHH
Confidence 86521 22 2222222211111 1 13345566665566666665554 89999999999999999
Q ss_pred HHHHHHhhC-----------CCCEEEEEEcCCCC-------------------------------------cchHHHHcc
Q 036794 543 AISKVVDRA-----------PRRVVFILVSSSLD-------------------------------------ALPHIIISR 574 (1152)
Q Consensus 543 aLLklLEep-----------p~~VifILaTN~~d-------------------------------------kL~~aL~SR 574 (1152)
.|+++|++. -.+++||++||-.. .+.|.+++|
T Consensus 630 ~Llq~le~g~~~d~~g~~v~~~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnR 709 (821)
T CHL00095 630 LLLQILDDGRLTDSKGRTIDFKNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNR 709 (821)
T ss_pred HHHHHhccCceecCCCcEEecCceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhcc
Confidence 999999983 36889999987311 034568899
Q ss_pred c-eEEEecCCChhHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 575 C-QKFFFPKMKDADIIYTLQWIASK-------EG--IEIDKDALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 575 ~-qvI~F~~p~~~EI~eiL~~iakk-------eG--l~Id~dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
+ .+|.|.+++.+++..++...+.+ .| +.++++++++|+... .-..|.+...+++.
T Consensus 710 id~ii~F~pL~~~~l~~Iv~~~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~ 777 (821)
T CHL00095 710 LDEIIVFRQLTKNDVWEIAEIMLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRL 777 (821)
T ss_pred CCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHH
Confidence 9 68999999999999887765543 33 468999999999972 22467666666654
|
|
| >PRK14088 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=162.41 Aligned_cols=205 Identities=14% Similarity=0.149 Sum_probs=139.3
Q ss_pred CcCccc-Cc--HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLV-GQ--NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLV-GQ--e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
+|++++ |. ..+...+..........+.++||||+|+|||++++++++++....+.. .+
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~-------------------~v 163 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-------------------RV 163 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCC-------------------eE
Confidence 699977 63 334455555554322234689999999999999999999875432111 02
Q ss_pred EEeCCCCC-------CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCC-CCEEEEEEcC-CC
Q 036794 496 KEVGPVGN-------FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAP-RRVVFILVSS-SL 564 (1152)
Q Consensus 496 iEIdaas~-------~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp-~~VifILaTN-~~ 564 (1152)
..+....- .....+.++.+... ....+|+|||++.+.. ..+..|+.+++... ....+|++++ .+
T Consensus 164 ~yi~~~~f~~~~~~~~~~~~~~~f~~~~~-----~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p 238 (440)
T PRK14088 164 MYITSEKFLNDLVDSMKEGKLNEFREKYR-----KKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREP 238 (440)
T ss_pred EEEEHHHHHHHHHHHHhcccHHHHHHHHH-----hcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCH
Confidence 22211000 00000111111111 1347999999998753 24556666665421 2234556664 33
Q ss_pred C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CC
Q 036794 565 D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQ 634 (1152)
Q Consensus 565 d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~ 634 (1152)
. .+.+.+.+|+. .+.|.+|+.+.+..+|+..++..++.++++++++|+.++.||+|.+...|.++..+ +.
T Consensus 239 ~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~~~~~~~ 318 (440)
T PRK14088 239 QKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGE 318 (440)
T ss_pred HHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHHHHHhCC
Confidence 3 46677999987 79999999999999999999999999999999999999999999999999998544 55
Q ss_pred CCCHHHHHHHHhc
Q 036794 635 RISVPLVQELVGL 647 (1152)
Q Consensus 635 ~IT~EdV~elVg~ 647 (1152)
.||.+.+.+++..
T Consensus 319 ~it~~~a~~~L~~ 331 (440)
T PRK14088 319 EVDLKEAILLLKD 331 (440)
T ss_pred CCCHHHHHHHHHH
Confidence 7999999888864
|
|
| >TIGR01817 nifA Nif-specific regulatory protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-13 Score=167.31 Aligned_cols=218 Identities=14% Similarity=0.158 Sum_probs=143.6
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
+++..+|++|+|++..++.+.+.+.. ......+||+||+|||||++|++|+........ |+ ...+|..+.....
T Consensus 189 ~~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~----pf-v~i~c~~~~~~~~ 263 (534)
T TIGR01817 189 RRRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRAKR----PF-VKVNCAALSETLL 263 (534)
T ss_pred ccccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCCCC----Ce-EEeecCCCCHHHH
Confidence 34556899999999998888877765 344556999999999999999999987543211 11 1122222211000
Q ss_pred -cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEE
Q 036794 493 -RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILV 560 (1152)
Q Consensus 493 -~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILa 560 (1152)
..++........+.. .........+.+++|||||++.|+...|..|+++|++.. .++.+|++
T Consensus 264 ~~~lfg~~~~~~~~~~------~~~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~ 337 (534)
T TIGR01817 264 ESELFGHEKGAFTGAI------AQRKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAA 337 (534)
T ss_pred HHHHcCCCCCccCCCC------cCCCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEe
Confidence 000000000000000 000000112557899999999999999999999998732 35889998
Q ss_pred cCCC-------CcchHHHHccceE--EEecCCC--hhHHHHHHHHHHH----HcC--CCCCHHHHHHHHHh-cCCCHHHH
Q 036794 561 SSSL-------DALPHIIISRCQK--FFFPKMK--DADIIYTLQWIAS----KEG--IEIDKDALKLIASR-SDGSLRDA 622 (1152)
Q Consensus 561 TN~~-------dkL~~aL~SR~qv--I~F~~p~--~~EI~eiL~~iak----keG--l~Id~dALelLAe~-s~GDLR~A 622 (1152)
|+.. ..+.+.|..|+.. |.++++. .+++..++..++. +.+ +.+++++++.|..+ |+||+|++
T Consensus 338 s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNvrEL 417 (534)
T TIGR01817 338 TNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNVREL 417 (534)
T ss_pred CCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChHHHH
Confidence 8743 2466778888874 6677775 3566655555443 233 57999999999999 99999999
Q ss_pred HHHHHHHHHh--CCCCCHHHHH
Q 036794 623 EMTLEQLSLL--GQRISVPLVQ 642 (1152)
Q Consensus 623 in~LEkLsLl--g~~IT~EdV~ 642 (1152)
.|.+++++.. +..|+.+++.
T Consensus 418 ~~v~~~a~~~~~~~~I~~~~l~ 439 (534)
T TIGR01817 418 ENCLERTATLSRSGTITRSDFS 439 (534)
T ss_pred HHHHHHHHHhCCCCcccHHHCc
Confidence 9999998776 3468888875
|
This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms. |
| >PRK09087 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=149.54 Aligned_cols=189 Identities=17% Similarity=0.171 Sum_probs=134.9
Q ss_pred CcCcccC---cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLVG---QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLVG---Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
+|++++. +..++..+.++. +...+.++|+||+|+|||++++++++.....
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~--~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~------------------------- 71 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP--NWPSPVVVLAGPVGSGKTHLASIWREKSDAL------------------------- 71 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc--cCCCCeEEEECCCCCCHHHHHHHHHHhcCCE-------------------------
Confidence 6999883 445666665544 2234558999999999999999998764321
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-CCEEEEEEcCC-CC---cchHH
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-RRVVFILVSSS-LD---ALPHI 570 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-~~VifILaTN~-~d---kL~~a 570 (1152)
.++.. .+.. +++..+. ..+|+|||++.+. ..+..|+.+++... ....+|++++. +. ...+.
T Consensus 72 -~i~~~-~~~~----~~~~~~~-------~~~l~iDDi~~~~-~~~~~lf~l~n~~~~~g~~ilits~~~p~~~~~~~~d 137 (226)
T PRK09087 72 -LIHPN-EIGS----DAANAAA-------EGPVLIEDIDAGG-FDETGLFHLINSVRQAGTSLLMTSRLWPSSWNVKLPD 137 (226)
T ss_pred -EecHH-Hcch----HHHHhhh-------cCeEEEECCCCCC-CCHHHHHHHHHHHHhCCCeEEEECCCChHHhcccccc
Confidence 12110 0111 1222211 1589999999874 23455666665422 24456666653 22 34567
Q ss_pred HHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH---HHh-CCCCCHHHHHH
Q 036794 571 IISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL---SLL-GQRISVPLVQE 643 (1152)
Q Consensus 571 L~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL---sLl-g~~IT~EdV~e 643 (1152)
|+||+ ..+.+.+|+.+++..+|++.++..++.++++++++|+.++.|+++.++..|+++ ++. +..||...+++
T Consensus 138 L~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~~~~~~~~it~~~~~~ 217 (226)
T PRK09087 138 LKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRLALERKSRITRALAAE 217 (226)
T ss_pred HHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 99998 689999999999999999999999999999999999999999999999877776 333 55799999999
Q ss_pred HHhcc
Q 036794 644 LVGLI 648 (1152)
Q Consensus 644 lVg~v 648 (1152)
++...
T Consensus 218 ~l~~~ 222 (226)
T PRK09087 218 VLNEM 222 (226)
T ss_pred HHHhh
Confidence 98653
|
|
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.6e-13 Score=161.37 Aligned_cols=181 Identities=19% Similarity=0.211 Sum_probs=135.8
Q ss_pred CcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|.+|-|.+..+..|...+..- ..+.++|||||||||||.+|++||.+++.++.....| .
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp--------e- 258 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP--------E- 258 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch--------h-
Confidence 5999999999998888776542 3345899999999999999999999998764332211 0
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhhC-----
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDRA----- 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEep----- 551 (1152)
.+...+.-.-..|+++|+++... ...||||||||.+.+. ....|+..|++.
T Consensus 259 ---------ivSGvSGESEkkiRelF~~A~~~----aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~ 325 (802)
T KOG0733|consen 259 ---------IVSGVSGESEKKIRELFDQAKSN----APCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKT 325 (802)
T ss_pred ---------hhcccCcccHHHHHHHHHHHhcc----CCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhccccccc
Confidence 11122334467899999998644 3489999999999653 345788888872
Q ss_pred -CCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 552 -PRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 552 -p~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
...|++|.+||.|+.|+++|++-+. .|-+.-|+.....++|+.+|+...+.- +-.+..||..++|-+..=
T Consensus 326 ~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTPGfVGAD 399 (802)
T KOG0733|consen 326 KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTPGFVGAD 399 (802)
T ss_pred CCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCCCccchh
Confidence 3679999999999999999987544 488899999999999999997554432 123677888888855543
|
|
| >TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.1e-13 Score=168.89 Aligned_cols=204 Identities=16% Similarity=0.174 Sum_probs=151.1
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...++++.||..+++++|+++.+..+...+.+...++ .||+||||+|||++|+.+|+.+.....+.. ..
T Consensus 174 ~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n-~lLvG~pGvGKTal~~~La~~i~~~~v~~~-----l~----- 242 (852)
T TIGR03345 174 TTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIAAGDVPPA-----LR----- 242 (852)
T ss_pred hhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCc-eeEECCCCCCHHHHHHHHHHHHhhCCCCcc-----cc-----
Confidence 3477888999999999999999999988887776665 689999999999999999999864321110 00
Q ss_pred cCCCccceEEeCC------CCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGP------VGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIda------as~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEep 551 (1152)
...++.++. .... . ...++.+++.+... ....||||||+|.+.. ++.+.|+.+|+.
T Consensus 243 ----~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~- 314 (852)
T TIGR03345 243 ----NVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALAR- 314 (852)
T ss_pred ----CCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCccccccHHHHhhHHhhC-
Confidence 001222211 1111 1 25677888877533 3567999999999953 234567788875
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC----
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS---- 618 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD---- 618 (1152)
..+.+|.+|+..+ .++++|.+||+.|.|++|+.++...+|+.+... .++.|+++|+..++..+.+-
T Consensus 315 -G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r 393 (852)
T TIGR03345 315 -GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGR 393 (852)
T ss_pred -CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccc
Confidence 6899999998632 378899999999999999999999997666543 46889999999999987643
Q ss_pred --HHHHHHHHHHHHH
Q 036794 619 --LRDAEMTLEQLSL 631 (1152)
Q Consensus 619 --LR~Ain~LEkLsL 631 (1152)
+..++.+|+.++.
T Consensus 394 ~LPDKAIdlldea~a 408 (852)
T TIGR03345 394 QLPDKAVSLLDTACA 408 (852)
T ss_pred cCccHHHHHHHHHHH
Confidence 4478889988754
|
Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system. |
| >PRK12422 chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.3e-13 Score=161.11 Aligned_cols=206 Identities=17% Similarity=0.184 Sum_probs=141.1
Q ss_pred CcCccc-Cc--HHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 419 TFRDLV-GQ--NLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 419 sFddLV-GQ--e~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
+|++++ |. ..+...+..+... +...+.++||||+|+|||++++++++++.+...
T Consensus 109 tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~------------------ 170 (445)
T PRK12422 109 TFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGG------------------ 170 (445)
T ss_pred cccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC------------------
Confidence 699977 53 3344555555432 223356899999999999999999999864311
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHH--H-hhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCC
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDN--M-VTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSL 564 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~--a-~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~ 564 (1152)
.+..+.... + ...+...+.. . ..........+|+|||++.+.. ..+..|+.+++.. .....+|++++.+
T Consensus 171 ---~v~yi~~~~-f-~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~ 245 (445)
T PRK12422 171 ---KILYVRSEL-F-TEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCA 245 (445)
T ss_pred ---CEEEeeHHH-H-HHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCC
Confidence 022221100 0 0011111100 0 0001113457999999999864 3566677666531 1234667777653
Q ss_pred ----CcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH---Hh--
Q 036794 565 ----DALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS---LL-- 632 (1152)
Q Consensus 565 ----dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs---Ll-- 632 (1152)
..+.+.|.+|+. .+.+.+|+.+++..+|+..++..++.++++++++|+....+|+|++++.|+.++ .+
T Consensus 246 p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~~~a~~~ 325 (445)
T PRK12422 246 PQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAKRVAYKK 325 (445)
T ss_pred HHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 246788999994 799999999999999999999999999999999999999999999999999984 23
Q ss_pred --CCCCCHHHHHHHHhc
Q 036794 633 --GQRISVPLVQELVGL 647 (1152)
Q Consensus 633 --g~~IT~EdV~elVg~ 647 (1152)
+..||.+++++++..
T Consensus 326 ~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 326 LSHQLLYVDDIKALLHD 342 (445)
T ss_pred hhCCCCCHHHHHHHHHH
Confidence 456999999988864
|
|
| >KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=4.7e-13 Score=156.63 Aligned_cols=226 Identities=18% Similarity=0.246 Sum_probs=152.3
Q ss_pred ccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHH-----hCCCC-cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 402 DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVM-----RRKVG-LLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 402 ~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~-----~gri~-~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
.......++|++||+|.+.++|.-+..-+..++.|++ ..+.+ ..+||+||+|+||||+++.|+++++....++.
T Consensus 63 ~~~~d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 63 NEKEDEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred CCCccccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 3444567899999999999999999999999999988 33333 58899999999999999999999999877776
Q ss_pred CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhh--------CCCCCCceEEEEeCCCCCCHH-----HHH
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT--------SRPPSQYRIFVFDDCDTLSPD-----SWS 542 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~--------~P~~a~~kVVIIDEID~Ls~e-----aqn 542 (1152)
.|...- ....-.....+..++ -......+...+..+.. .-....+++|+|||+...... .++
T Consensus 143 Npi~~~----~~~~~h~~t~~~~~~-~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~e 217 (634)
T KOG1970|consen 143 NPINLK----EPENLHNETSFLMFP-YQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFRE 217 (634)
T ss_pred CCcccc----ccccccccchhcccc-hhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHH
Confidence 554311 110000000000001 01122333333333311 111245679999998776432 234
Q ss_pred HHHHHHhhCCCCEEEEEEcC------CCC-cchHHHHc--cceEEEecCCChhHHHHHHHHHHHHcCCCCC------HHH
Q 036794 543 AISKVVDRAPRRVVFILVSS------SLD-ALPHIIIS--RCQKFFFPKMKDADIIYTLQWIASKEGIEID------KDA 607 (1152)
Q Consensus 543 aLLklLEepp~~VifILaTN------~~d-kL~~aL~S--R~qvI~F~~p~~~EI~eiL~~iakkeGl~Id------~dA 607 (1152)
.|..+...+...++||++-. +.+ .++..+.. |...|.|+|+.+.-+.+.|..+|..++.... ...
T Consensus 218 vL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~ 297 (634)
T KOG1970|consen 218 VLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAE 297 (634)
T ss_pred HHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHH
Confidence 55555555555566666531 112 34554544 4557999999999999999999999877766 567
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 608 LKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 608 LelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
++.++..++||+|.|++.|+..+..
T Consensus 298 v~~i~~~s~GDIRsAInsLQlsssk 322 (634)
T KOG1970|consen 298 VELICQGSGGDIRSAINSLQLSSSK 322 (634)
T ss_pred HHHHHHhcCccHHHHHhHhhhhccc
Confidence 8999999999999999999987643
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-13 Score=175.01 Aligned_cols=221 Identities=19% Similarity=0.261 Sum_probs=150.7
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+...+..........+.... -..|+||+.++..+..++.... ....|||+||+|||||++|++||+.+
T Consensus 544 p~~~~~~~e~~~l~~l~~~l----~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l 619 (852)
T TIGR03346 544 PVSKMLEGEREKLLHMEEVL----HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFL 619 (852)
T ss_pred CcccccHHHHHHHHHHHHHh----hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33344333333333444443 3679999999999999997632 23579999999999999999999998
Q ss_pred cccCCCCCCCCCCCCccccccCCCccceEEe-CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISK 546 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~~dviEI-daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLk 546 (1152)
.+... +|..+ .|..+.. .......+ .+.++++.++...+.+.+...| +.||||||++.++++.++.|++
T Consensus 620 ~~~~~----~~i~~-d~s~~~~-~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p----~~vlllDeieka~~~v~~~Ll~ 689 (852)
T TIGR03346 620 FDDED----AMVRI-DMSEYME-KHSVARLIGAPPGYVGYEEGGQLTEAVRRKP----YSVVLFDEVEKAHPDVFNVLLQ 689 (852)
T ss_pred cCCCC----cEEEE-echhhcc-cchHHHhcCCCCCccCcccccHHHHHHHcCC----CcEEEEeccccCCHHHHHHHHH
Confidence 75421 11111 1111111 00000111 1234455555555656655544 4799999999999999999999
Q ss_pred HHhhC-----------CCCEEEEEEcCCCC-------------------------cchHHHHccce-EEEecCCChhHHH
Q 036794 547 VVDRA-----------PRRVVFILVSSSLD-------------------------ALPHIIISRCQ-KFFFPKMKDADII 589 (1152)
Q Consensus 547 lLEep-----------p~~VifILaTN~~d-------------------------kL~~aL~SR~q-vI~F~~p~~~EI~ 589 (1152)
+|++. -.+++||++||-.. .+.+.|+.|+. ++.|.|++.+++.
T Consensus 690 ~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~ 769 (852)
T TIGR03346 690 VLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIA 769 (852)
T ss_pred HHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHH
Confidence 99874 25788999988511 14466888985 7899999999888
Q ss_pred HHHHHHHH-------HcC--CCCCHHHHHHHHHh-c--CCCHHHHHHHHHHHH
Q 036794 590 YTLQWIAS-------KEG--IEIDKDALKLIASR-S--DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 590 eiL~~iak-------keG--l~Id~dALelLAe~-s--~GDLR~Ain~LEkLs 630 (1152)
+++...+. ..+ +.++++++++|+.+ | .++.|.+.+.+++..
T Consensus 770 ~I~~l~L~~l~~~l~~~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i 822 (852)
T TIGR03346 770 RIVEIQLGRLRKRLAERKITLELSDAALDFLAEAGYDPVYGARPLKRAIQREI 822 (852)
T ss_pred HHHHHHHHHHHHHHHHCCCeecCCHHHHHHHHHhCCCCCCCchhHHHHHHHHH
Confidence 87665443 233 56899999999998 5 689999999998864
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-13 Score=169.74 Aligned_cols=191 Identities=19% Similarity=0.246 Sum_probs=136.5
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|+++.|.+.+++.|.+.+.. -+.+.++|||||||||||++|+++|+++++.+....
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~--------- 519 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVR--------- 519 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEe---------
Confidence 34799999999999999887752 244568999999999999999999999875421110
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHhh--
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVDR-- 550 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLEe-- 550 (1152)
. .++.. .........++.++..+... .+.||||||+|.+.. ...+.|+..|+.
T Consensus 520 ----~---~~l~~--~~vGese~~i~~~f~~A~~~----~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~ 586 (733)
T TIGR01243 520 ----G---PEILS--KWVGESEKAIREIFRKARQA----APAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQ 586 (733)
T ss_pred ----h---HHHhh--cccCcHHHHHHHHHHHHHhc----CCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhccc
Confidence 0 00000 00111234577788776543 358999999998732 245678888874
Q ss_pred CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHH
Q 036794 551 APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++ ||. .+.|+.|+.+++.++++...+. ..++++ .+..|+..+.| +..++.++
T Consensus 587 ~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~--~~~~~~~~l~~la~~t~g~sgadi~~~ 664 (733)
T TIGR01243 587 ELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRS--MPLAEDVDLEELAEMTEGYTGADIEAV 664 (733)
T ss_pred CCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcC--CCCCccCCHHHHHHHcCCCCHHHHHHH
Confidence 45789999999999999999986 887 5889999999999998766544 444433 47888888776 55666666
Q ss_pred HHHHHH
Q 036794 626 LEQLSL 631 (1152)
Q Consensus 626 LEkLsL 631 (1152)
+..+++
T Consensus 665 ~~~A~~ 670 (733)
T TIGR01243 665 CREAAM 670 (733)
T ss_pred HHHHHH
Confidence 666544
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR01242 26Sp45 26S proteasome subunit P45 family | Back alignment and domain information |
|---|
Probab=99.52 E-value=2e-13 Score=157.50 Aligned_cols=209 Identities=16% Similarity=0.149 Sum_probs=138.4
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|++|.|.+..++.|..++... ..+.++|||||||||||++|+++|+.+........
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~-------- 188 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV-------- 188 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecc--------
Confidence 3447899999999999999887531 33567999999999999999999998765421110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh--
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR-- 550 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe-- 550 (1152)
+..+ . ..........+++++..+.. ....||||||+|.+. ...+..|..++.+
T Consensus 189 ~~~l--------~--~~~~g~~~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld 254 (364)
T TIGR01242 189 GSEL--------V--RKYIGEGARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELD 254 (364)
T ss_pred hHHH--------H--HHhhhHHHHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhh
Confidence 0000 0 00000112334555554432 234699999999873 2234455555543
Q ss_pred ---CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 551 ---APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 551 ---pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
...++.||++||.++.+++++++ |+. .|.|+.|+.++..++++.++....+.- +..+..|+..+.| +.+++.
T Consensus 255 ~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~~~~la~~t~g~sg~dl~ 333 (364)
T TIGR01242 255 GFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVDLEAIAKMTEGASGADLK 333 (364)
T ss_pred CCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCCHHHHHHHcCCCCHHHHH
Confidence 24589999999999999999986 555 589999999999999988775544321 1236667777665 445555
Q ss_pred HHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 624 MTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 624 n~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+++..+... ...|+.+|+.+++..
T Consensus 334 ~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 334 AICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 555555332 235899888887754
|
Many proteins may score above the trusted cutoff because an internal |
| >TIGR02974 phageshock_pspF psp operon transcriptional activator PspF | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.9e-13 Score=154.66 Aligned_cols=206 Identities=13% Similarity=0.103 Sum_probs=133.5
Q ss_pred ccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEeCC
Q 036794 423 LVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEVGP 500 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEIda 500 (1152)
|+|++..++.+...+.. ......+||+|++||||+++|++|+........ |+. ..+|..+..... ..++....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~----pfv-~vnc~~~~~~~l~~~lfG~~~ 75 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRWQG----PLV-KLNCAALSENLLDSELFGHEA 75 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCccCC----CeE-EEeCCCCChHHHHHHHhcccc
Confidence 57888888777766655 444556999999999999999999986543221 211 122322211000 00000000
Q ss_pred CCCCCHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC----
Q 036794 501 VGNFDFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL---- 564 (1152)
Q Consensus 501 as~~~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~---- 564 (1152)
....+... -..+ ...+..++|||||++.|+...|..|+.+|++. +.++++|++|+..
T Consensus 76 g~~~ga~~~~~G~-------~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~ 148 (329)
T TIGR02974 76 GAFTGAQKRHQGR-------FERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPAL 148 (329)
T ss_pred ccccCcccccCCc-------hhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHH
Confidence 00000000 0001 11256789999999999999999999999873 2578999998742
Q ss_pred ---CcchHHHHccceE--EEecCCC--hhHHHHHHHHH----HHHcC----CCCCHHHHHHHHHh-cCCCHHHHHHHHHH
Q 036794 565 ---DALPHIIISRCQK--FFFPKMK--DADIIYTLQWI----ASKEG----IEIDKDALKLIASR-SDGSLRDAEMTLEQ 628 (1152)
Q Consensus 565 ---dkL~~aL~SR~qv--I~F~~p~--~~EI~eiL~~i----akkeG----l~Id~dALelLAe~-s~GDLR~Ain~LEk 628 (1152)
..+.+.|..|+.. |.++++. .+|+..++..+ +.+.| ..+++++++.|..+ |+||+|++.|.+++
T Consensus 149 ~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrEL~n~i~~ 228 (329)
T TIGR02974 149 AAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRELKNVVER 228 (329)
T ss_pred hhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHHHHHHHHH
Confidence 2467789999864 6666665 34565554443 33334 35899999999999 99999999999999
Q ss_pred HHHhC--CCCCHHH
Q 036794 629 LSLLG--QRISVPL 640 (1152)
Q Consensus 629 LsLlg--~~IT~Ed 640 (1152)
++... +.|+.++
T Consensus 229 ~~~~~~~~~~~~~~ 242 (329)
T TIGR02974 229 SVYRHGLEEAPIDE 242 (329)
T ss_pred HHHhCCCCccchhh
Confidence 98764 4566655
|
Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH |
| >TIGR03689 pup_AAA proteasome ATPase | Back alignment and domain information |
|---|
Probab=99.52 E-value=5e-13 Score=159.66 Aligned_cols=186 Identities=18% Similarity=0.178 Sum_probs=125.1
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
.+++.+.+|++|.|.+..++.+..++.. -..+..+|||||||||||++|+++|+++........ +
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~---~ 249 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAET---G 249 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccccc---C
Confidence 3456667899999999999999888753 134568999999999999999999999865421100 0
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH------------HHHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD------------SWSAISKV 547 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e------------aqnaLLkl 547 (1152)
. ..++ + .-...++. ..........++.+++.+......+.+.||||||+|.+... ..+.|+..
T Consensus 250 ~-~~~f-l-~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~ 324 (512)
T TIGR03689 250 D-KSYF-L-NIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSE 324 (512)
T ss_pred C-ceeE-E-eccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHH
Confidence 0 0000 0 00000000 00111123456677776654433345689999999987321 23567777
Q ss_pred HhhCC--CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH
Q 036794 548 VDRAP--RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD 606 (1152)
Q Consensus 548 LEepp--~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d 606 (1152)
|+... .+++||++||.++.|+++|++ |+. .|.|++|+.+++.++++.++.. .+.++++
T Consensus 325 LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~~ 387 (512)
T TIGR03689 325 LDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDAD 387 (512)
T ss_pred hcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchHH
Confidence 76533 589999999999999999998 776 4999999999999999988764 3455444
|
In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity. |
| >PRK11608 pspF phage shock protein operon transcriptional activator; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=8.4e-13 Score=150.59 Aligned_cols=210 Identities=12% Similarity=0.131 Sum_probs=135.7
Q ss_pred cCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEE
Q 036794 420 FRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKE 497 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviE 497 (1152)
|++++|.+..++.+.+.+.. ......+||+|++||||+++|++|+....... .|+ +..+|..+.... ...++.
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~----~pf-v~v~c~~~~~~~~~~~lfg 79 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ----GPF-ISLNCAALNENLLDSELFG 79 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCccC----CCe-EEEeCCCCCHHHHHHHHcc
Confidence 78999999888888776655 44455699999999999999999997544221 111 122333321110 000110
Q ss_pred eCCCCCCCHH-HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCCC-
Q 036794 498 VGPVGNFDFE-SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSSL- 564 (1152)
Q Consensus 498 Idaas~~~vd-eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~~- 564 (1152)
.......+.. ....++ ..+..++|||||++.|+...|..|+.+|++.. .+++||++|+..
T Consensus 80 ~~~~~~~g~~~~~~g~l-------~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l 152 (326)
T PRK11608 80 HEAGAFTGAQKRHPGRF-------ERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADL 152 (326)
T ss_pred ccccccCCcccccCCch-------hccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhH
Confidence 0000000000 000111 12556899999999999999999999998621 368888888642
Q ss_pred ------CcchHHHHccce--EEEecCCCh--hHHHHHHHHH----HHHcC----CCCCHHHHHHHHHh-cCCCHHHHHHH
Q 036794 565 ------DALPHIIISRCQ--KFFFPKMKD--ADIIYTLQWI----ASKEG----IEIDKDALKLIASR-SDGSLRDAEMT 625 (1152)
Q Consensus 565 ------dkL~~aL~SR~q--vI~F~~p~~--~EI~eiL~~i----akkeG----l~Id~dALelLAe~-s~GDLR~Ain~ 625 (1152)
..+.+.|..|+. .|.++++.. +|+..++..+ +.+.+ ..+++++++.|..+ |+||+|++.|.
T Consensus 153 ~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~v 232 (326)
T PRK11608 153 PAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPGNIRELKNV 232 (326)
T ss_pred HHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCcHHHHHHHH
Confidence 246678999986 466666654 3555544443 44444 35899999999999 99999999999
Q ss_pred HHHHHHhC--CCCCHHHH
Q 036794 626 LEQLSLLG--QRISVPLV 641 (1152)
Q Consensus 626 LEkLsLlg--~~IT~EdV 641 (1152)
+++++... ..|+.+++
T Consensus 233 l~~a~~~~~~~~~~~~~l 250 (326)
T PRK11608 233 VERSVYRHGTSEYPLDNI 250 (326)
T ss_pred HHHHHHhcCCCCCchhhc
Confidence 99987763 34655543
|
|
| >TIGR00763 lon ATP-dependent protease La | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-13 Score=172.75 Aligned_cols=196 Identities=22% Similarity=0.331 Sum_probs=132.5
Q ss_pred CcccCcHHHHHHHHHHHHhC-----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 421 RDLVGQNLVAQALSNAVMRR-----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g-----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
++++|++.+++.+.+++... ..++.+||+||||||||++|++||+.++....... ++.-.....+ .+.. .
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~--~~~~~~~~~i-~g~~--~ 394 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFS--LGGVRDEAEI-RGHR--R 394 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEe--CCCcccHHHH-cCCC--C
Confidence 45889999999988765421 22347999999999999999999999975532211 0000000000 0000 0
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhC---------------CCCEE
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDRA---------------PRRVV 556 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEep---------------p~~Vi 556 (1152)
..++ .....+.+.+..+. ....||||||||.+... ..++|+.+|+.. ..+++
T Consensus 395 ~~~g----~~~g~i~~~l~~~~-----~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 395 TYVG----AMPGRIIQGLKKAK-----TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred ceeC----CCCchHHHHHHHhC-----cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 0111 11233444444332 22349999999999753 357899988740 14789
Q ss_pred EEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHhcC--CCHHHHHH
Q 036794 557 FILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA-----SKE-----GIEIDKDALKLIASRSD--GSLRDAEM 624 (1152)
Q Consensus 557 fILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia-----kke-----Gl~Id~dALelLAe~s~--GDLR~Ain 624 (1152)
||++||..+.++++|++||.+|.|++++.++...+++..+ +.. ++.++++++..|++.+. ..+|.+..
T Consensus 466 ~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r 545 (775)
T TIGR00763 466 FIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLER 545 (775)
T ss_pred EEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHH
Confidence 9999999999999999999999999999999888876654 222 45799999999998743 46777777
Q ss_pred HHHHHH
Q 036794 625 TLEQLS 630 (1152)
Q Consensus 625 ~LEkLs 630 (1152)
.+++++
T Consensus 546 ~i~~~~ 551 (775)
T TIGR00763 546 QIEKIC 551 (775)
T ss_pred HHHHHH
Confidence 776653
|
This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock. |
| >PRK14087 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.9e-13 Score=157.30 Aligned_cols=206 Identities=15% Similarity=0.224 Sum_probs=141.8
Q ss_pred CCCcCccc-Cc--HHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 417 PRTFRDLV-GQ--NLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 417 P~sFddLV-GQ--e~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
+.+|+.++ |. ..+...+...... +...+.++|||++|+|||++++++++++.......
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~------------------ 172 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDL------------------ 172 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCC------------------
Confidence 35799977 43 3355555555443 33335688999999999999999999875321111
Q ss_pred cceEEeCCCCCC-C-H-------HHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhC-CCCEEEEEE
Q 036794 493 RNIKEVGPVGNF-D-F-------ESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--PDSWSAISKVVDRA-PRRVVFILV 560 (1152)
Q Consensus 493 ~dviEIdaas~~-~-v-------deIreLle~a~~~P~~a~~kVVIIDEID~Ls--~eaqnaLLklLEep-p~~VifILa 560 (1152)
.+..+.+..-. . . +.+.++.+.. ....+|+|||++.+. ...++.|+.+++.. ...-.+|++
T Consensus 173 -~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~------~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIlt 245 (450)
T PRK14087 173 -KVSYMSGDEFARKAVDILQKTHKEIEQFKNEI------CQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFS 245 (450)
T ss_pred -eEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHh------ccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEE
Confidence 01222110000 0 0 1111111111 344799999999987 45667777777652 223356777
Q ss_pred cCCCC----cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCC--CCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 561 SSSLD----ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGI--EIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 561 TN~~d----kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl--~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
++.+. .+.+.|.+|+. .+.+.+|+.+++.++|+..++..|+ .++++++++|+..+.||+|.+.+.|.++..
T Consensus 246 sd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~~ 325 (450)
T PRK14087 246 SDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLNF 325 (450)
T ss_pred CCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 76542 35678999987 6999999999999999999998886 699999999999999999999999999853
Q ss_pred h---C---CCCCHHHHHHHHhc
Q 036794 632 L---G---QRISVPLVQELVGL 647 (1152)
Q Consensus 632 l---g---~~IT~EdV~elVg~ 647 (1152)
+ . ..||.+.|.+++..
T Consensus 326 ~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 326 WSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHhcccCCCCCCHHHHHHHHhh
Confidence 3 2 46999999998864
|
|
| >COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=4.7e-13 Score=150.08 Aligned_cols=122 Identities=20% Similarity=0.296 Sum_probs=105.4
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------------CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------------LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------------~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
++|+||||+|+|.-++|..|.+.||+. --.++|++||. |+-+|..|+.|+.+|...|++.+++.++|
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEse-~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi 370 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALESE-LAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREII 370 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhcc-cCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHH
Confidence 579999999999999999999999984 34467788873 56799999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 593 QWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+.+++.+++.++++|+++|+.. ...++|.++++|.-+... .+.|..+||..+-..
T Consensus 371 ~iRa~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~~l 431 (450)
T COG1224 371 RIRAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAKEL 431 (450)
T ss_pred HHhhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHHHH
Confidence 9999999999999999999999 556999999999865333 346899998877543
|
|
| >PRK14086 dnaA chromosomal replication initiation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2e-12 Score=156.41 Aligned_cols=209 Identities=18% Similarity=0.168 Sum_probs=141.8
Q ss_pred hhhhhCCCCcCccc-Cc--HHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDLV-GQ--NLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddLV-GQ--e~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+..+| +|++|+ |. ..+...+...+.. +...+.++|||++|+|||+|+++|++++.......
T Consensus 281 L~~~~---TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~------------ 345 (617)
T PRK14086 281 LNPKY---TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGT------------ 345 (617)
T ss_pred CCCCC---CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCC------------
Confidence 33455 699977 43 2344445554443 23334589999999999999999999875321100
Q ss_pred ccCCCccceEEeCCCCCC-C-HH-----HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhCC-CCEE
Q 036794 487 HDRGKSRNIKEVGPVGNF-D-FE-----SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRAP-RRVV 556 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~-~-vd-----eIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEepp-~~Vi 556 (1152)
.++++...... . .. .+..+.+. .....+|||||++.+... .+..|+.+++... .+..
T Consensus 346 -------~V~Yitaeef~~el~~al~~~~~~~f~~~------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~ 412 (617)
T PRK14086 346 -------RVRYVSSEEFTNEFINSIRDGKGDSFRRR------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQ 412 (617)
T ss_pred -------eEEEeeHHHHHHHHHHHHHhccHHHHHHH------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCC
Confidence 02222110000 0 00 00011111 123479999999998543 3566777766522 2344
Q ss_pred EEEEcCCC----CcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036794 557 FILVSSSL----DALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 557 fILaTN~~----dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL 629 (1152)
+|++++.. ..+.+.|.+|+. .+.+.+|+.+.+..+|+..+...++.++++++++|+.+..+|+|.+...|.++
T Consensus 413 IIITSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL 492 (617)
T PRK14086 413 IVLSSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRV 492 (617)
T ss_pred EEEecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 66677653 347778999987 68999999999999999999999999999999999999999999999999998
Q ss_pred HHh----CCCCCHHHHHHHHhc
Q 036794 630 SLL----GQRISVPLVQELVGL 647 (1152)
Q Consensus 630 sLl----g~~IT~EdV~elVg~ 647 (1152)
..+ +..||.+.+.+++..
T Consensus 493 ~a~a~~~~~~itl~la~~vL~~ 514 (617)
T PRK14086 493 TAFASLNRQPVDLGLTEIVLRD 514 (617)
T ss_pred HHHHHhhCCCCCHHHHHHHHHH
Confidence 544 456999998888853
|
|
| >COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.51 E-value=8.9e-14 Score=160.91 Aligned_cols=205 Identities=18% Similarity=0.274 Sum_probs=134.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dv 495 (1152)
..|.+|||.+...+.+.+.++. ......+|++|++||||+.+|+.|+...... ...|+ ...+|..+..+-.. .+
T Consensus 75 ~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~---~~~PF-I~~NCa~~~en~~~~eL 150 (403)
T COG1221 75 EALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR---AEAPF-IAFNCAAYSENLQEAEL 150 (403)
T ss_pred hhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc---cCCCE-EEEEHHHhCcCHHHHHH
Confidence 3589999999888888777766 3444579999999999999999999433221 12222 22344444322110 01
Q ss_pred EEeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCC
Q 036794 496 KEVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSS 563 (1152)
Q Consensus 496 iEIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~ 563 (1152)
|-......++. ..-..+++. +.++++|+||++.|++..|..|+++||+ .+.+|.+|++|+.
T Consensus 151 FG~~kGaftGa~~~k~Glfe~-------A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~ 223 (403)
T COG1221 151 FGHEKGAFTGAQGGKAGLFEQ-------ANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTE 223 (403)
T ss_pred hccccceeecccCCcCchhee-------cCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeecccc
Confidence 11000000010 000112222 5678999999999999999999999998 5679999999985
Q ss_pred C--CcchH--HHHccceE--EEecCCChh--HHHH----HHHHHHHHcCCC---CCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 564 L--DALPH--IIISRCQK--FFFPKMKDA--DIIY----TLQWIASKEGIE---IDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 564 ~--dkL~~--aL~SR~qv--I~F~~p~~~--EI~e----iL~~iakkeGl~---Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
. +.+.. ++..|+.. |.++++.++ |+.. ++...+++.+.+ .+++++..|..| |+||+|++.|.++
T Consensus 224 ~l~~~~~~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~pGNirELkN~Ve 303 (403)
T COG1221 224 DLEEAVLAGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDWPGNIRELKNLVE 303 (403)
T ss_pred CHHHHHHhhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHHHH
Confidence 4 34555 78887664 666665443 4444 344455555654 346888888888 9999999999999
Q ss_pred HHHHhC
Q 036794 628 QLSLLG 633 (1152)
Q Consensus 628 kLsLlg 633 (1152)
.+++..
T Consensus 304 ~~~~~~ 309 (403)
T COG1221 304 RAVAQA 309 (403)
T ss_pred HHHHHh
Confidence 987663
|
|
| >PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.5e-13 Score=159.83 Aligned_cols=202 Identities=15% Similarity=0.172 Sum_probs=133.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dvi 496 (1152)
.+.+++|++..++.+.+.+.. +.....+||+|++||||+++|++|+....... .|+ ...+|..+.... ...++
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~----~p~-v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRAD----KPL-VYLNCAALPESLAESELF 259 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcCC----CCe-EEEEcccCChHHHHHHhc
Confidence 578999999999888877766 45556799999999999999999998754321 121 112233331100 00000
Q ss_pred EeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC
Q 036794 497 EVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL 564 (1152)
Q Consensus 497 EIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~ 564 (1152)
........+. ......++ .+.+++|||||++.|+...|..|+++|++. +.++.+|++|+..
T Consensus 260 G~~~g~~~ga~~~~~g~~~-------~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~ 332 (509)
T PRK05022 260 GHVKGAFTGAISNRSGKFE-------LADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRD 332 (509)
T ss_pred CccccccCCCcccCCcchh-------hcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCC
Confidence 0000000000 00000111 255689999999999999999999999872 2378999999753
Q ss_pred -------CcchHHHHccceE--EEecCCCh--hHHHHHHH----HHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHH
Q 036794 565 -------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQ----WIASKEG---IEIDKDALKLIASR-SDGSLRDAEMT 625 (1152)
Q Consensus 565 -------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~----~iakkeG---l~Id~dALelLAe~-s~GDLR~Ain~ 625 (1152)
..+.+.|..|+.. |.++++.. +|+..++. ..+.+.| +.+++++++.|..+ |+||+|++.|.
T Consensus 333 l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvrEL~~~ 412 (509)
T PRK05022 333 LREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNVRELEHV 412 (509)
T ss_pred HHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcHHHHHHH
Confidence 2477788899876 45555543 34444433 3333333 56999999999999 99999999999
Q ss_pred HHHHHHh
Q 036794 626 LEQLSLL 632 (1152)
Q Consensus 626 LEkLsLl 632 (1152)
+++++..
T Consensus 413 i~ra~~~ 419 (509)
T PRK05022 413 ISRAALL 419 (509)
T ss_pred HHHHHHh
Confidence 9998776
|
|
| >PRK11388 DNA-binding transcriptional regulator DhaR; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.1e-13 Score=163.98 Aligned_cols=213 Identities=17% Similarity=0.174 Sum_probs=139.6
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dv 495 (1152)
.+|++++|.+..++.+...++. ......+||+|++||||+++|++|+........ |+ ...+|..+..... ..+
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~----pf-v~vnc~~~~~~~~~~el 396 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERAAG----PY-IAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCccCC----Ce-EEEECCCCChHHHHHHh
Confidence 3699999998888777655544 444556999999999999999999987653221 21 1122333211000 000
Q ss_pred EEeC-CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCC
Q 036794 496 KEVG-PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSS 563 (1152)
Q Consensus 496 iEId-aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~ 563 (1152)
+... .....+. ...+ ..+.+++||||||+.|+...|..|+++|++.. .++.+|++|+.
T Consensus 397 fg~~~~~~~~~~---~g~~-------~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~ 466 (638)
T PRK11388 397 LGSDRTDSENGR---LSKF-------ELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTA 466 (638)
T ss_pred cCCCCcCccCCC---CCce-------eECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccC
Confidence 0000 0000000 0000 02567899999999999999999999998731 26788888874
Q ss_pred C-------CcchHHHHccceE--EEecCCChh--HHHHHHHHHHH----Hc--CCCCCHHHHHHHHHh-cCCCHHHHHHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKDA--DIIYTLQWIAS----KE--GIEIDKDALKLIASR-SDGSLRDAEMT 625 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~~--EI~eiL~~iak----ke--Gl~Id~dALelLAe~-s~GDLR~Ain~ 625 (1152)
. ..+.+.|..|+.. |.+|++... |+..++..++. +. .+.+++++++.|..+ |+||+|++.|.
T Consensus 467 ~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvreL~~~ 546 (638)
T PRK11388 467 DLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDFELRSV 546 (638)
T ss_pred CHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHHHHHHH
Confidence 3 2466778888875 555555443 45544444443 22 246899999999999 89999999999
Q ss_pred HHHHHHh--CCCCCHHHHHHHH
Q 036794 626 LEQLSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 626 LEkLsLl--g~~IT~EdV~elV 645 (1152)
|+.++.. +..|+.+++...+
T Consensus 547 l~~~~~~~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 547 IENLALSSDNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHhCCCCeecHHHCchhh
Confidence 9998765 3458888877655
|
|
| >PRK10820 DNA-binding transcriptional regulator TyrR; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.7e-12 Score=156.64 Aligned_cols=212 Identities=14% Similarity=0.184 Sum_probs=139.0
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dv 495 (1152)
..|++++|.+..++.+...+++ ......+||+|++||||+++|++++....... .|+. ..+|..+..... ..+
T Consensus 201 ~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~----~pfv-~inca~~~~~~~e~el 275 (520)
T PRK10820 201 SAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRGK----KPFL-ALNCASIPDDVVESEL 275 (520)
T ss_pred ccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCCC----CCeE-EeccccCCHHHHHHHh
Confidence 3799999999888877766653 55566799999999999999999987654321 1221 223333321000 000
Q ss_pred EEeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCC
Q 036794 496 KEVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSS 563 (1152)
Q Consensus 496 iEIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~ 563 (1152)
+...+....+. ..-..+++. +..++|||||++.|+...|..|+++|++. +.++.||++|+.
T Consensus 276 FG~~~~~~~~~~~~~~g~~e~-------a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~ 348 (520)
T PRK10820 276 FGHAPGAYPNALEGKKGFFEQ-------ANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQK 348 (520)
T ss_pred cCCCCCCcCCcccCCCChhhh-------cCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCC
Confidence 10000000000 000011111 45689999999999999999999999872 246788888864
Q ss_pred C-------CcchHHHHccceE--EEecCCChh--HHHHH----HHHHHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKDA--DIIYT----LQWIASKEGI---EIDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~~--EI~ei----L~~iakkeGl---~Id~dALelLAe~-s~GDLR~Ain 624 (1152)
. ..+.+.|..|+.. |.++++.+. ++..+ +...+.+.|. .+++++++.|..+ |+||+|++.|
T Consensus 349 ~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGNvreL~n 428 (520)
T PRK10820 349 NLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGNVRQLKN 428 (520)
T ss_pred CHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCHHHHHHH
Confidence 3 1356778999765 556665442 44433 4444555554 6899999999999 9999999999
Q ss_pred HHHHHHHh--CCCCCHHHH
Q 036794 625 TLEQLSLL--GQRISVPLV 641 (1152)
Q Consensus 625 ~LEkLsLl--g~~IT~EdV 641 (1152)
.|++++.. +..|+.+++
T Consensus 429 vl~~a~~~~~~~~i~~~~~ 447 (520)
T PRK10820 429 AIYRALTQLEGYELRPQDI 447 (520)
T ss_pred HHHHHHHhCCCCcccHHHc
Confidence 99998765 446888885
|
|
| >PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.4e-13 Score=144.87 Aligned_cols=188 Identities=22% Similarity=0.259 Sum_probs=124.6
Q ss_pred CcCccc-C--cHHHHHHHHHHHHhCC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMRRK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|+.+| | ++.+...+........ ....++||||+|+|||++.+++++++....... -
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~-------------------~ 66 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGK-------------------R 66 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS--------------------
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccc-------------------c
Confidence 699986 6 4555555555444422 234678999999999999999999876432111 1
Q ss_pred eEEeCCCCCCC--------HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhC-CCCEEEEEEcCC
Q 036794 495 IKEVGPVGNFD--------FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRA-PRRVVFILVSSS 563 (1152)
Q Consensus 495 viEIdaas~~~--------vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEep-p~~VifILaTN~ 563 (1152)
+..+++. .+. -+.+.++.+.+ ....+|+||+++.+.... +..|..+++.. .....+|++++.
T Consensus 67 v~y~~~~-~f~~~~~~~~~~~~~~~~~~~~------~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~ 139 (219)
T PF00308_consen 67 VVYLSAE-EFIREFADALRDGEIEEFKDRL------RSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDR 139 (219)
T ss_dssp EEEEEHH-HHHHHHHHHHHTTSHHHHHHHH------CTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred ceeecHH-HHHHHHHHHHHcccchhhhhhh------hcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCC
Confidence 2222210 000 01111222222 345899999999997653 67888777762 123356666643
Q ss_pred -C---CcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 564 -L---DALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 564 -~---dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
| ..+.+.|.+|+. .+.+.+|+.+++..+|+..+...|+.++++++++|+..+++|+|.+...|+++..+
T Consensus 140 ~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 140 PPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp -TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred CCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 3 346778999976 69999999999999999999999999999999999999999999999999998765
|
DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A. |
| >KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3e-13 Score=159.12 Aligned_cols=175 Identities=18% Similarity=0.219 Sum_probs=129.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||-+++++..+|..+|... ..+.++|||||||+|||.+|+++|++.+..+....
T Consensus 508 VtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK---------- 577 (802)
T KOG0733|consen 508 VTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVK---------- 577 (802)
T ss_pred CChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeec----------
Confidence 47999999999999999888652 33558999999999999999999999775532111
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh--CC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR--AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe--pp 552 (1152)
| +.++ +.+-.-.-..+|.+|..++.. ...|||+||+|.|.+ ...|.||.-|+. ..
T Consensus 578 ----G--PELl--NkYVGESErAVR~vFqRAR~s----aPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R 645 (802)
T KOG0733|consen 578 ----G--PELL--NKYVGESERAVRQVFQRARAS----APCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER 645 (802)
T ss_pred ----C--HHHH--HHHhhhHHHHHHHHHHHhhcC----CCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc
Confidence 0 0011 001111234588888887543 458999999999943 356788887776 34
Q ss_pred CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHh
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASR 614 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~ 614 (1152)
..|++|.+||.|+.+++++++-+. .+.+..|+..+..++|+.+.+..+..+++++ ++.|+..
T Consensus 646 ~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 646 RGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred cceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 689999999999999999998654 4667788899999999999886666666654 6667665
|
|
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-13 Score=168.83 Aligned_cols=196 Identities=19% Similarity=0.294 Sum_probs=134.0
Q ss_pred CcccCcHHHHHHHHHHHHhC--------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-
Q 036794 421 RDLVGQNLVAQALSNAVMRR--------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK- 491 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g--------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~- 491 (1152)
..|+||++++..|..++... +....+||+||+|||||++|++||+.+++..... .|..+....
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~i--------d~se~~~~~~ 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRF--------DMSEYMERHT 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEe--------echhhccccc
Confidence 56899999999999998752 2224699999999999999999999996543211 111111100
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEE
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILV 560 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILa 560 (1152)
...++. .+.++.+.+....+.+.+...| +.||||||+|+++++.++.|+++|++. -.+++||++
T Consensus 530 ~~~LiG-~~~gyvg~~~~g~L~~~v~~~p----~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~T 604 (758)
T PRK11034 530 VSRLIG-APPGYVGFDQGGLLTDAVIKHP----HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_pred HHHHcC-CCCCcccccccchHHHHHHhCC----CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEe
Confidence 000110 1223333333333444444333 489999999999999999999999862 147889999
Q ss_pred cCCC-------------------------CcchHHHHccce-EEEecCCChhHHHHHHHHHHH-------HcCC--CCCH
Q 036794 561 SSSL-------------------------DALPHIIISRCQ-KFFFPKMKDADIIYTLQWIAS-------KEGI--EIDK 605 (1152)
Q Consensus 561 TN~~-------------------------dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iak-------keGl--~Id~ 605 (1152)
||.- ..+.|.++.|+. ++.|++++.+++..++...+. ..|+ .+++
T Consensus 605 sN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~ 684 (758)
T PRK11034 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQ 684 (758)
T ss_pred CCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECH
Confidence 9821 125678999997 799999999999887765543 2344 5799
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 606 DALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 606 dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
+++++|+... .-..|.+...|++.
T Consensus 685 ~~~~~l~~~~~~~~~GAR~l~r~i~~~ 711 (758)
T PRK11034 685 EARDWLAEKGYDRAMGARPMARVIQDN 711 (758)
T ss_pred HHHHHHHHhCCCCCCCCchHHHHHHHH
Confidence 9999999872 22466666666653
|
|
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.2e-13 Score=169.93 Aligned_cols=220 Identities=21% Similarity=0.307 Sum_probs=145.6
Q ss_pred ccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 396 GQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 396 ~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++..........+.+.. +..|+||+.++..|..++...+ ....|||+||+|||||++|++||+.+
T Consensus 547 p~~~~~~~~~~~l~~l~~~l----~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 547 PVSRMLESEREKLLRMEQEL----HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CchhhhhhHHHHHHHHHHHh----CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44444444433344444443 6889999999999999987632 11369999999999999999999988
Q ss_pred cccCCCCCCCCCCCCccccccCCCc-cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHH
Q 036794 468 NCQSLEQPKPCGFCNSCISHDRGKS-RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISK 546 (1152)
Q Consensus 468 ~~~~~e~~epcg~c~~c~~i~~g~~-~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLk 546 (1152)
.+... ++ .+..|..+..... ..++. .+.++.+.+....+.+.+...| +.||||||++.+++..++.|++
T Consensus 623 ~~~~~----~~-i~id~se~~~~~~~~~LiG-~~pgy~g~~~~g~l~~~v~~~p----~~vLllDEieka~~~v~~~Ll~ 692 (857)
T PRK10865 623 FDSDD----AM-VRIDMSEFMEKHSVSRLVG-APPGYVGYEEGGYLTEAVRRRP----YSVILLDEVEKAHPDVFNILLQ 692 (857)
T ss_pred hcCCC----cE-EEEEhHHhhhhhhHHHHhC-CCCcccccchhHHHHHHHHhCC----CCeEEEeehhhCCHHHHHHHHH
Confidence 65421 11 1222222211100 00110 1223344444333444444433 4799999999999999999999
Q ss_pred HHhhC-----------CCCEEEEEEcCCC-------------------------CcchHHHHccc-eEEEecCCChhHHH
Q 036794 547 VVDRA-----------PRRVVFILVSSSL-------------------------DALPHIIISRC-QKFFFPKMKDADII 589 (1152)
Q Consensus 547 lLEep-----------p~~VifILaTN~~-------------------------dkL~~aL~SR~-qvI~F~~p~~~EI~ 589 (1152)
+|++. -.+++||++||.. ..+.|.|++|+ .++.|.|++.+++.
T Consensus 693 ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~ 772 (857)
T PRK10865 693 VLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIA 772 (857)
T ss_pred HHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHH
Confidence 99873 2456789988752 12456799999 68999999999998
Q ss_pred HHHHHHHHH-------cC--CCCCHHHHHHHHHhc-C--CCHHHHHHHHHHH
Q 036794 590 YTLQWIASK-------EG--IEIDKDALKLIASRS-D--GSLRDAEMTLEQL 629 (1152)
Q Consensus 590 eiL~~iakk-------eG--l~Id~dALelLAe~s-~--GDLR~Ain~LEkL 629 (1152)
.++...+.. .+ +.++++++++|+.+. . -..|.+.+.|++.
T Consensus 773 ~Iv~~~L~~l~~rl~~~gi~l~is~~al~~L~~~gy~~~~GARpL~r~I~~~ 824 (857)
T PRK10865 773 SIAQIQLQRLYKRLEERGYEIHISDEALKLLSENGYDPVYGARPLKRAIQQQ 824 (857)
T ss_pred HHHHHHHHHHHHHHHhCCCcCcCCHHHHHHHHHcCCCccCChHHHHHHHHHH
Confidence 877665543 24 458999999999973 2 2577777777764
|
|
| >TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA | Back alignment and domain information |
|---|
Probab=99.48 E-value=4.5e-13 Score=167.49 Aligned_cols=196 Identities=20% Similarity=0.284 Sum_probs=139.8
Q ss_pred CcccCcHHHHHHHHHHHHhC--------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 421 RDLVGQNLVAQALSNAVMRR--------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g--------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
..|+||+.+++.|.+++... +...+|||+||+|||||++|++||+.+++.......+ .+... +
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~s--------e~~~~-~ 524 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMS--------EYMEK-H 524 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCc--------hhhhc-c
Confidence 56899999999999998753 2234699999999999999999999987543221110 11000 0
Q ss_pred cceEEe-CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEE
Q 036794 493 RNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILV 560 (1152)
Q Consensus 493 ~dviEI-daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILa 560 (1152)
.....+ .+.++.+.++...+.+.+...| +.||||||+++++++.++.|+++|++. -.+++||++
T Consensus 525 ~~~~lig~~~gyvg~~~~~~l~~~~~~~p----~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~T 600 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQGGLLTEAVRKHP----HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRNVILIMT 600 (731)
T ss_pred cHHHHhcCCCCCcccchhhHHHHHHHhCC----CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCCCEEEEC
Confidence 000011 1334556666666666665544 489999999999999999999999972 246789998
Q ss_pred cCCCC-------------------------cchHHHHccce-EEEecCCChhHHHHHHHHHHHH-------cC--CCCCH
Q 036794 561 SSSLD-------------------------ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASK-------EG--IEIDK 605 (1152)
Q Consensus 561 TN~~d-------------------------kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakk-------eG--l~Id~ 605 (1152)
||-.. .+.|.++.|+. +|.|.+++.+++..++...+.+ .| +.+++
T Consensus 601 sn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~ 680 (731)
T TIGR02639 601 SNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTD 680 (731)
T ss_pred CCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCH
Confidence 86421 25677889996 7999999999999988776652 23 56899
Q ss_pred HHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 606 DALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 606 dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
+++++|+... .-..|.+...|++.
T Consensus 681 ~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 681 DAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred HHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 9999999872 23577777777664
|
|
| >PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.1e-13 Score=151.36 Aligned_cols=105 Identities=21% Similarity=0.300 Sum_probs=82.2
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------------CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------------LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------------~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
++|+||||+|+|.-+++..|-+.||.+ -..++|++||. ++-+|..|+.||.+|...|++.+++.++|
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs~-~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il 357 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALESE-LSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQIL 357 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTST-T--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHH
T ss_pred cceEEecchhhccHHHHHHHHHHhcCC-CCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHH
Confidence 579999999999999999999999984 45577788873 44688999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHH
Q 036794 593 QWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLs 630 (1152)
.-+|+.+++.++++|+++|... ...++|.++++|.-+.
T Consensus 358 ~iR~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a~ 396 (398)
T PF06068_consen 358 KIRAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPAS 396 (398)
T ss_dssp HHHHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHHH
T ss_pred HhhhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhhh
Confidence 9999999999999999999988 5679999999987654
|
The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C. |
| >COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.46 E-value=3.8e-13 Score=161.64 Aligned_cols=205 Identities=21% Similarity=0.233 Sum_probs=151.1
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|.|+.|.+++++.|.+.+.. +++|.++||+||||||||++|+++|.+.+.++..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~------------- 213 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS------------- 213 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCcee-------------
Confidence 5799999999999998887743 5788899999999999999999999887755321
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDRAP 552 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEepp 552 (1152)
-+..+++++.. ..+...+|++++++.... +.+|||||+|.... ...|.||--++...
T Consensus 214 ---iSGS~FVemfV--GvGAsRVRdLF~qAkk~a----P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~ 284 (596)
T COG0465 214 ---ISGSDFVEMFV--GVGASRVRDLFEQAKKNA----PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG 284 (596)
T ss_pred ---ccchhhhhhhc--CCCcHHHHHHHHHhhccC----CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC
Confidence 22334555432 356788999999986432 37999999998742 24556666666544
Q ss_pred --CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHHH
Q 036794 553 --RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 553 --~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-DLR~Ain~ 625 (1152)
..+++|.+||.++.++++|++-.. .|....|+.....++++-+++...+ ++++ +..+++.++| ...++.|.
T Consensus 285 ~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l--~~~Vdl~~iAr~tpGfsGAdL~nl 362 (596)
T COG0465 285 GNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL--AEDVDLKKIARGTPGFSGADLANL 362 (596)
T ss_pred CCCceEEEecCCCcccchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC--CCcCCHHHHhhhCCCcccchHhhh
Confidence 578999999999999999987543 5888899989999999866655443 3322 4448888777 55677777
Q ss_pred HHHHHHhC-----CCCCHHHHHHHHh
Q 036794 626 LEQLSLLG-----QRISVPLVQELVG 646 (1152)
Q Consensus 626 LEkLsLlg-----~~IT~EdV~elVg 646 (1152)
+..+++++ ..|+..++.+.++
T Consensus 363 ~NEAal~aar~n~~~i~~~~i~ea~d 388 (596)
T COG0465 363 LNEAALLAARRNKKEITMRDIEEAID 388 (596)
T ss_pred HHHHHHHHHHhcCeeEeccchHHHHH
Confidence 77766552 2477777776664
|
|
| >TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.4e-12 Score=146.15 Aligned_cols=231 Identities=18% Similarity=0.224 Sum_probs=148.1
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-------cccCCC-CCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-------NCQSLE-QPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-------~~~~~e-~~epcg~c~~c~~i~~g~ 491 (1152)
|..||||++++..|.-++-....++ +||.|++|+|||+++++|+..+ +|.... ...||..|..|.......
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~-vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~ 81 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGG-VMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQ 81 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCe-EEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhcc
Confidence 8999999999999876666655554 7899999999999999999987 554332 237899999998753210
Q ss_pred c--------cceEEeCCC-----CCCCHHHHHHHHHH----HhhCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhC--
Q 036794 492 S--------RNIKEVGPV-----GNFDFESILDLLDN----MVTSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRA-- 551 (1152)
Q Consensus 492 ~--------~dviEIdaa-----s~~~vdeIreLle~----a~~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEep-- 551 (1152)
. ..+..+ +. .-++.-.+...+.. +..-+. .+.++++||||++.|+...|+.|+.+|++.
T Consensus 82 ~~~~~~~~~~~~~~l-P~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~~g~~ 160 (337)
T TIGR02030 82 EPLSIIKKPVPVVDL-PLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAASGWN 160 (337)
T ss_pred cccccccCCCCcCCC-CCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHHhCCe
Confidence 0 000111 11 11121122222111 011111 256789999999999999999999999863
Q ss_pred -----------CCCEEEEEEcCCCC-cchHHHHccceE-EEecCCCh-hHHHHHHHHHHH--------------------
Q 036794 552 -----------PRRVVFILVSSSLD-ALPHIIISRCQK-FFFPKMKD-ADIIYTLQWIAS-------------------- 597 (1152)
Q Consensus 552 -----------p~~VifILaTN~~d-kL~~aL~SR~qv-I~F~~p~~-~EI~eiL~~iak-------------------- 597 (1152)
+.++++|.+.|-.+ .++++++.|+.. +.+..+.. ++..+++.....
T Consensus 161 ~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~~~~~ 240 (337)
T TIGR02030 161 VVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQEALQ 240 (337)
T ss_pred EEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhhhcCH
Confidence 23344444444223 599999999984 66766655 554444443110
Q ss_pred ---------HcCCCCCHHHHHHHHHh---cCC-CHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccchhh
Q 036794 598 ---------KEGIEIDKDALKLIASR---SDG-SLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISDEK 652 (1152)
Q Consensus 598 ---------keGl~Id~dALelLAe~---s~G-DLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~ee~ 652 (1152)
-..+.++++++++++.. .+. +.|..+..+..+ +++.+ .++.+||+.++..+...-
T Consensus 241 ~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~HR 313 (337)
T TIGR02030 241 AKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRHR 313 (337)
T ss_pred HHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 13566889988888776 333 467776666554 44444 599999998886654443
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. |
| >PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=3.7e-12 Score=145.41 Aligned_cols=157 Identities=16% Similarity=0.229 Sum_probs=114.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
+.+..++||||||||||.+|+++|+++++..... ..+. +. +....-....+++++..+....
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~elg~~~i~v-------------sa~e---L~--sk~vGEsEk~IR~~F~~A~~~a 207 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVM-------------SAGE---LE--SENAGEPGKLIRQRYREAADII 207 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEE-------------EHHH---hh--cCcCCcHHHHHHHHHHHHHHHh
Confidence 6677999999999999999999999998752111 0000 00 0111123456888888775422
Q ss_pred -CCCCceEEEEeCCCCCCHH-----------H-HHHHHHHHhh--------------CCCCEEEEEEcCCCCcchHHHHc
Q 036794 521 -PPSQYRIFVFDDCDTLSPD-----------S-WSAISKVVDR--------------APRRVVFILVSSSLDALPHIIIS 573 (1152)
Q Consensus 521 -~~a~~kVVIIDEID~Ls~e-----------a-qnaLLklLEe--------------pp~~VifILaTN~~dkL~~aL~S 573 (1152)
..+...||||||||.+... . ...|+..++. ....|.+|++||+++.|+++|++
T Consensus 208 ~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlR 287 (413)
T PLN00020 208 KKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIR 287 (413)
T ss_pred hccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcC
Confidence 2245689999999987431 1 2466766653 24578999999999999999999
Q ss_pred --cceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 574 --RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 574 --R~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
|+..+ |..|+.+++.++|+.+++..+ ++...+..|+..++|-
T Consensus 288 pGRfDk~-i~lPd~e~R~eIL~~~~r~~~--l~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 288 DGRMEKF-YWAPTREDRIGVVHGIFRDDG--VSREDVVKLVDTFPGQ 331 (413)
T ss_pred CCCCCce-eCCCCHHHHHHHHHHHhccCC--CCHHHHHHHHHcCCCC
Confidence 77775 458999999999999888765 5678888999998884
|
|
| >COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.43 E-value=5.7e-12 Score=145.87 Aligned_cols=238 Identities=21% Similarity=0.279 Sum_probs=155.3
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
..-|-|.. +.+.+..+.+|...+.. +..+..+++||++|||||.+++.+.+++........ ....+|....
T Consensus 11 ~~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~---~~yINc~~~~ 84 (366)
T COG1474 11 LEDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANVE---VVYINCLELR 84 (366)
T ss_pred CCCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCc---eEEEeeeeCC
Confidence 34566643 78888777766655443 444555899999999999999999999876532221 1122333332
Q ss_pred CCCc------cceEEeCCCCCCCHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh---hCCCCEEEE
Q 036794 489 RGKS------RNIKEVGPVGNFDFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVD---RAPRRVVFI 558 (1152)
Q Consensus 489 ~g~~------~dviEIdaas~~~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLE---epp~~VifI 558 (1152)
.... ..+..+ +.......+ ...+.+.+. .....-||+|||+|.|.....+.|+.++. +....+.+|
T Consensus 85 t~~~i~~~i~~~~~~~-p~~g~~~~~~~~~l~~~~~---~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi 160 (366)
T COG1474 85 TPYQVLSKILNKLGKV-PLTGDSSLEILKRLYDNLS---KKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSII 160 (366)
T ss_pred CHHHHHHHHHHHcCCC-CCCCCchHHHHHHHHHHHH---hcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEE
Confidence 1110 000000 111111122 222222222 13556789999999997765455555444 444567888
Q ss_pred EEcCCCC---cchHHHHccce--EEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHh---cCCCHHHHHHHHHH
Q 036794 559 LVSSSLD---ALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASR---SDGSLRDAEMTLEQ 628 (1152)
Q Consensus 559 LaTN~~d---kL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~---s~GDLR~Ain~LEk 628 (1152)
+++|+.+ .+.+.+.+++. .|.|+|++.+|+.++|..+++. ..-.++++++++++.. ..||.|.++..|..
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~ 240 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRR 240 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHH
Confidence 8888764 57777888876 4889999999999999998874 2335899999888755 66899999999999
Q ss_pred HHHhC-----CCCCHHHHHHHHhccchhhHHHHHHH
Q 036794 629 LSLLG-----QRISVPLVQELVGLISDEKLVDLLDL 659 (1152)
Q Consensus 629 LsLlg-----~~IT~EdV~elVg~v~ee~ifdLldA 659 (1152)
++..+ ..++.++|..+........+.+.++.
T Consensus 241 A~eiAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~ 276 (366)
T COG1474 241 AGEIAEREGSRKVSEDHVREAQEEIERDVLEEVLKT 276 (366)
T ss_pred HHHHHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHc
Confidence 87663 46999999999665555555554443
|
|
| >PRK13407 bchI magnesium chelatase subunit I; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=8e-12 Score=142.96 Aligned_cols=234 Identities=15% Similarity=0.162 Sum_probs=139.3
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC--ccccccCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN--SCISHDRGKSR 493 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~--~c~~i~~g~~~ 493 (1152)
.|..|.+|+||+.++..|.-++..... +++||+|+||||||++|++|++.+.+.......||..+. .|.........
T Consensus 3 ~~~~f~~i~Gq~~~~~~l~~~~~~~~~-~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~ 81 (334)
T PRK13407 3 KPFPFSAIVGQEEMKQAMVLTAIDPGI-GGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSST 81 (334)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHhccCC-CcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCC
Confidence 367799999999999988865543333 348999999999999999999999765443333333321 01000000000
Q ss_pred c-------eEEeCCC----CCCCHHHHHHHHHH----HhhCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhC------
Q 036794 494 N-------IKEVGPV----GNFDFESILDLLDN----MVTSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRA------ 551 (1152)
Q Consensus 494 d-------viEIdaa----s~~~vdeIreLle~----a~~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEep------ 551 (1152)
. +..+-.. .-+|.-.+...+.. +..-+. .+..+++||||++.++...++.|+..|++.
T Consensus 82 ~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~v~v~r 161 (334)
T PRK13407 82 TMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGENVVER 161 (334)
T ss_pred cccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCCeEEEE
Confidence 0 1111000 01111111111111 111111 245689999999999999999999999863
Q ss_pred -------CCCEEEEEEcCCCC-cchHHHHccce-EEEecCCCh-hHHHHHHHHHHH------------------------
Q 036794 552 -------PRRVVFILVSSSLD-ALPHIIISRCQ-KFFFPKMKD-ADIIYTLQWIAS------------------------ 597 (1152)
Q Consensus 552 -------p~~VifILaTN~~d-kL~~aL~SR~q-vI~F~~p~~-~EI~eiL~~iak------------------------ 597 (1152)
+..+++|.++|-.+ .++++++.||. .+.+.++.. ++..+++.....
T Consensus 162 ~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 241 (334)
T PRK13407 162 EGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDMQLRGRIL 241 (334)
T ss_pred CCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccccccccCCHHHHH
Confidence 23455555555333 58999999987 466666655 554444443211
Q ss_pred -----HcCCCCCHHHHHHHHHh---cC-CCHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccch
Q 036794 598 -----KEGIEIDKDALKLIASR---SD-GSLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISD 650 (1152)
Q Consensus 598 -----keGl~Id~dALelLAe~---s~-GDLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~e 650 (1152)
-..+.++++.++++++. ++ ...|..+.++..+ +++.+ .|+.+||+++...+..
T Consensus 242 ~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl~ 308 (334)
T PRK13407 242 GARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMALS 308 (334)
T ss_pred HHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhhh
Confidence 13467899998888777 22 2566666655544 34443 4999999887754433
|
|
| >COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.9e-12 Score=145.12 Aligned_cols=208 Identities=15% Similarity=0.189 Sum_probs=141.1
Q ss_pred CcCcccCcHHHHHHHHH-HHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceE
Q 036794 419 TFRDLVGQNLVAQALSN-AVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~-aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dvi 496 (1152)
.|+.|++.+..++.+.. +.+-+.....+||.|++||||..+|++.+........ |+ ..-+|..+.... ..+++
T Consensus 202 ~F~~~v~~S~~mk~~v~qA~k~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~----pF-lalNCA~lPe~~aEsElF 276 (511)
T COG3283 202 GFEQIVAVSPKMKHVVEQAQKLAMLDAPLLITGETGTGKDLLAKACHLASPRHSK----PF-LALNCASLPEDAAESELF 276 (511)
T ss_pred chHHHhhccHHHHHHHHHHHHhhccCCCeEEecCCCchHHHHHHHHhhcCcccCC----Ce-eEeecCCCchhHhHHHHh
Confidence 59999999887777664 4444666667999999999999999999876433221 11 122333331110 11111
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~- 564 (1152)
--.+ + .+.-..+++. +.++.||+|||..|++..|.+||++|.+ ...+|++|++|..+
T Consensus 277 G~ap-g---~~gk~GffE~-------AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL 345 (511)
T COG3283 277 GHAP-G---DEGKKGFFEQ-------ANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNL 345 (511)
T ss_pred cCCC-C---CCCccchhhh-------ccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccH
Confidence 1111 0 0011123333 5668999999999999999999999987 23588899988532
Q ss_pred ------CcchHHHHccceEEEecCCChhHH----H----HHHHHHHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQKFFFPKMKDADI----I----YTLQWIASKEGI---EIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qvI~F~~p~~~EI----~----eiL~~iakkeGl---~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
.++.+.|..|+.++.+.-|+..+. . -++++++.+.|+ .++++.+.+|..| |+||+|++.|.|
T Consensus 346 ~~lv~~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~WpGNVRqL~N~i 425 (511)
T COG3283 346 VELVQKGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAWPGNVRQLKNAI 425 (511)
T ss_pred HHHHhcCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCCCccHHHHHHHH
Confidence 357778999999866665554432 2 256777777776 4789999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQ 642 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~ 642 (1152)
-+++.. +..++.+++.
T Consensus 426 yRA~s~~Eg~~l~i~~i~ 443 (511)
T COG3283 426 YRALTLLEGYELRIEDIL 443 (511)
T ss_pred HHHHHHhccCccchhhcc
Confidence 887544 4556666654
|
|
| >KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.42 E-value=7e-12 Score=142.00 Aligned_cols=185 Identities=19% Similarity=0.189 Sum_probs=124.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|+||.|.+++++-|++++.- . +.-.++|++||||||||.+|+++|.+.+-.
T Consensus 210 kW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tT----------------- 272 (491)
T KOG0738|consen 210 KWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTT----------------- 272 (491)
T ss_pred ChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCe-----------------
Confidence 579999999999999998754 1 223589999999999999999999885532
Q ss_pred cCCCccceEEeCCC----CCC-CHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------HHHHHHHHHHh
Q 036794 488 DRGKSRNIKEVGPV----GNF-DFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------DSWSAISKVVD 549 (1152)
Q Consensus 488 ~~g~~~dviEIdaa----s~~-~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~------------eaqnaLLklLE 549 (1152)
+|.+... ... .-+. ++-||+-+++.. ..+|||||||.|.. ..-+.||-.|+
T Consensus 273 -------FFNVSsstltSKwRGeSEKlvRlLFemARfyA----PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmD 341 (491)
T KOG0738|consen 273 -------FFNVSSSTLTSKWRGESEKLVRLLFEMARFYA----PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMD 341 (491)
T ss_pred -------EEEechhhhhhhhccchHHHHHHHHHHHHHhC----CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhh
Confidence 2222211 111 1233 455555554332 36999999999832 24557887777
Q ss_pred hC-----CCCEEEEEE-cCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 550 RA-----PRRVVFILV-SSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 550 ep-----p~~VifILa-TN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.. ...++||++ ||-|-.|+++|++|+. +|.++.|+.+.....|+..+..-. ..++--++.|++.++| +-.+
T Consensus 342 G~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~-~~~~~~~~~lae~~eGySGaD 420 (491)
T KOG0738|consen 342 GVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVE-LDDPVNLEDLAERSEGYSGAD 420 (491)
T ss_pred ccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhcccc-CCCCccHHHHHHHhcCCChHH
Confidence 52 234555555 5667789999999999 488888888888888776554322 2234457788888766 4445
Q ss_pred HHHHHHHHHHh
Q 036794 622 AEMTLEQLSLL 632 (1152)
Q Consensus 622 Ain~LEkLsLl 632 (1152)
+.|.+..+++.
T Consensus 421 I~nvCreAsm~ 431 (491)
T KOG0738|consen 421 ITNVCREASMM 431 (491)
T ss_pred HHHHHHHHHHH
Confidence 55566555544
|
|
| >CHL00206 ycf2 Ycf2; Provisional | Back alignment and domain information |
|---|
Probab=99.41 E-value=2.9e-12 Score=165.90 Aligned_cols=202 Identities=12% Similarity=0.091 Sum_probs=135.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC-------CCCCCCccccccCCCccc--------------eEEeC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK-------PCGFCNSCISHDRGKSRN--------------IKEVG 499 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e-------pcg~c~~c~~i~~g~~~d--------------viEId 499 (1152)
..+.++||+||||||||.+|+++|.+.+.+...... |-++... .+..+...+ +.++.
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d--~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLID--DIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhccccccccc--ccccccccccccccccccccchhhhhhc
Confidence 456699999999999999999999998766433210 0000000 000010000 00100
Q ss_pred --CC--CCCCHH--HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----HHHHHHHHHhh-----CCCCEEEEEEcCC
Q 036794 500 --PV--GNFDFE--SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----SWSAISKVVDR-----APRRVVFILVSSS 563 (1152)
Q Consensus 500 --aa--s~~~vd--eIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----aqnaLLklLEe-----pp~~VifILaTN~ 563 (1152)
.. ...+.+ .++.+++.+... .+.||+|||||.+... ..+.|+..|+. ...+|+||+|||.
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~----SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~~~s~~~VIVIAATNR 1781 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAM----SPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCERCSTRNILVIASTHI 1781 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHC----CCeEEEEEchhhcCCCccceehHHHHHHHhccccccCCCCCEEEEEeCCC
Confidence 00 001122 377788887654 3489999999999753 25677777764 2457999999999
Q ss_pred CCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH--HHHHHHHhcCC-CHHHHHHHHHHHHHh---C-
Q 036794 564 LDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD--ALKLIASRSDG-SLRDAEMTLEQLSLL---G- 633 (1152)
Q Consensus 564 ~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d--ALelLAe~s~G-DLR~Ain~LEkLsLl---g- 633 (1152)
|+.++|+|++ |+. .|.++.|+..+..+++.......|+.++++ .++.+|..+.| +.+++.+++..+++. .
T Consensus 1782 PD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~ 1861 (2281)
T CHL00206 1782 PQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK 1861 (2281)
T ss_pred cccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 9999999998 666 488888888887777765555567766644 37888999877 778888888887655 2
Q ss_pred -CCCCHHHHHHHHhcc
Q 036794 634 -QRISVPLVQELVGLI 648 (1152)
Q Consensus 634 -~~IT~EdV~elVg~v 648 (1152)
..|+.+++..++..+
T Consensus 1862 ks~Id~~~I~~Al~Rq 1877 (2281)
T CHL00206 1862 KSIIDTNTIRSALHRQ 1877 (2281)
T ss_pred CCccCHHHHHHHHHHH
Confidence 348989988887654
|
|
| >COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.8e-12 Score=151.59 Aligned_cols=208 Identities=16% Similarity=0.191 Sum_probs=147.1
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|.++.|.+.+++.++.++.. -+.+.++|||||||||||++|+++|.+++..+....
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~---------- 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVK---------- 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEee----------
Confidence 3689999988888888877643 134458999999999999999999997765532111
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHh--hCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVD--RAP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLE--epp 552 (1152)
.+. +. +..-.-....+++++..+.. ....||||||+|.+. ....+.|+..++ +..
T Consensus 309 ---~~~---l~--sk~vGesek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~ 376 (494)
T COG0464 309 ---GSE---LL--SKWVGESEKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA 376 (494)
T ss_pred ---CHH---Hh--ccccchHHHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc
Confidence 110 00 00011223567888887763 344799999999982 146678888886 456
Q ss_pred CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCC-CCHHHHHHHHHhcCC-CHHHHHHHHH
Q 036794 553 RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIE-IDKDALKLIASRSDG-SLRDAEMTLE 627 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~-Id~dALelLAe~s~G-DLR~Ain~LE 627 (1152)
.+|++|.+||.++.+++++++ |+. .+.|++|+..+..++++..+...... .++-.++.+++.+.| ...++..++.
T Consensus 377 ~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ 456 (494)
T COG0464 377 EGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVR 456 (494)
T ss_pred CceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHH
Confidence 788999999999999999999 888 58899999999999999988866654 334457777776665 5556666666
Q ss_pred HHHHh------CCCCCHHHHHHHHhc
Q 036794 628 QLSLL------GQRISVPLVQELVGL 647 (1152)
Q Consensus 628 kLsLl------g~~IT~EdV~elVg~ 647 (1152)
.+++. ...||.+++.+++..
T Consensus 457 ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 457 EAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHh
Confidence 65443 124676666666544
|
|
| >KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.1e-11 Score=135.96 Aligned_cols=122 Identities=24% Similarity=0.350 Sum_probs=104.4
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC-------------CCcchHHHHccceEEEecCCChhHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS-------------LDALPHIIISRCQKFFFPKMKDADIIYT 591 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~-------------~dkL~~aL~SR~qvI~F~~p~~~EI~ei 591 (1152)
++|+||||+|+|.-+.|..|.+.||.+ -..++||++|. |+-+|+.|+.|+.+|...+++++++..+
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES~-iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~I 375 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALESP-IAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQI 375 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcCC-CCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHH
Confidence 569999999999999999999999985 45567788763 5568999999999999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh----CC-CCCHHHHHHHHhc
Q 036794 592 LQWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL----GQ-RISVPLVQELVGL 647 (1152)
Q Consensus 592 L~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl----g~-~IT~EdV~elVg~ 647 (1152)
|+.+++.+|+.++++|+.+|+.. +..++|.++++|--+.+. +. .|..++|+++...
T Consensus 376 i~~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~~L 437 (456)
T KOG1942|consen 376 IKIRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVTEL 437 (456)
T ss_pred HHHHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHHHH
Confidence 99999999999999999999998 567999999998854333 33 5888888877543
|
|
| >PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.7e-12 Score=157.47 Aligned_cols=209 Identities=15% Similarity=0.211 Sum_probs=135.4
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cce
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNI 495 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dv 495 (1152)
..|++++|++..++.+.+.+.. ......+||+||+|||||++|++|+........ |+ ...+|..+..... ..+
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~----~~-v~i~c~~~~~~~~~~~l 447 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRNNR----RM-VKMNCAAMPAGLLESDL 447 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCC----Ce-EEEecccCChhHhhhhh
Confidence 4689999999999888877664 345557999999999999999999987543211 11 1223333321100 001
Q ss_pred EEeCCCCCCC-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCC
Q 036794 496 KEVGPVGNFD-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSS 563 (1152)
Q Consensus 496 iEIdaas~~~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~ 563 (1152)
+.-......+ .......++. +.+++|||||++.|+...|..|+++|++. +.++.+|++|+.
T Consensus 448 fg~~~~~~~g~~~~~~g~le~-------a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 448 FGHERGAFTGASAQRIGRFEL-------ADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred cCcccccccccccchhhHHHh-------cCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 1000000000 0001112221 45689999999999999999999999862 257889999874
Q ss_pred C-------CcchHHHHccceE--EEecCCCh--hHHHHHHHH----HHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHH
Q 036794 564 L-------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQW----IASKEGI---EIDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 564 ~-------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~----iakkeGl---~Id~dALelLAe~-s~GDLR~Ain 624 (1152)
. ..+...|..|+.. |.++|+.. +|+..++.. ++.+.|. .+++++++.|..+ |+||+|++.|
T Consensus 521 ~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGNvrEL~~ 600 (686)
T PRK15429 521 DLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGNVRELEN 600 (686)
T ss_pred CHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCcHHHHHH
Confidence 3 2356668888775 55555543 344444443 3443343 4899999999999 9999999999
Q ss_pred HHHHHHHhC--CCCCH
Q 036794 625 TLEQLSLLG--QRISV 638 (1152)
Q Consensus 625 ~LEkLsLlg--~~IT~ 638 (1152)
.+++++... ..|+.
T Consensus 601 ~i~~a~~~~~~~~i~~ 616 (686)
T PRK15429 601 VIERAVLLTRGNVLQL 616 (686)
T ss_pred HHHHHHHhCCCCcccc
Confidence 999998763 24554
|
|
| >CHL00081 chlI Mg-protoporyphyrin IX chelatase | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.4e-12 Score=143.75 Aligned_cols=231 Identities=17% Similarity=0.187 Sum_probs=145.6
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC--------CCCccccccCC
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG--------FCNSCISHDRG 490 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg--------~c~~c~~i~~g 490 (1152)
.|.+||||++++.+|..++....++ .+||+||+|||||++|+++++.+.+.......||+ .|..|.....+
T Consensus 15 pf~~ivGq~~~k~al~~~~~~p~~~-~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~~~~~~~~~~ 93 (350)
T CHL00081 15 PFTAIVGQEEMKLALILNVIDPKIG-GVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMSDEVREAIQN 93 (350)
T ss_pred CHHHHhChHHHHHHHHHhccCCCCC-eEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhchhhhhhhcc
Confidence 5999999999999999998887776 68999999999999999999998765443334444 23334333211
Q ss_pred Cc--------cceEEeCCCCCCCHHH------HHHHHHHHhh--CC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC
Q 036794 491 KS--------RNIKEVGPVGNFDFES------ILDLLDNMVT--SR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551 (1152)
Q Consensus 491 ~~--------~dviEIdaas~~~vde------IreLle~a~~--~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep 551 (1152)
.. ..+..+- .+...+. +...+..... .+ ..+..++|||||++.+++..|+.|+.+|++.
T Consensus 94 ~~~~~~~~~~~~~~~lp--~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LLeam~e~ 171 (350)
T CHL00081 94 GETIETEKIKIPMVDLP--LGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILLDSAASG 171 (350)
T ss_pred cccccceeccccceecC--CCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhCCHHHHHHHHHHHHhC
Confidence 10 1111111 1111111 1111211110 01 1356789999999999999999999999862
Q ss_pred -------------CCCEEEEEEcCCCC-cchHHHHccce-EEEecCCCh-hHHHHHHHHHH-------------------
Q 036794 552 -------------PRRVVFILVSSSLD-ALPHIIISRCQ-KFFFPKMKD-ADIIYTLQWIA------------------- 596 (1152)
Q Consensus 552 -------------p~~VifILaTN~~d-kL~~aL~SR~q-vI~F~~p~~-~EI~eiL~~ia------------------- 596 (1152)
+.++++|.+.|-.+ .+++.++.|+. .+.+..+.. ++..++|+...
T Consensus 172 ~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~~~~~~~~~~~~~~~~~~~ 251 (350)
T CHL00081 172 WNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTSFDKNPQEFREKYEESQEE 251 (350)
T ss_pred CeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhccccChhhhhhhhcccccc
Confidence 23333444333222 59999999998 467776653 44444443321
Q ss_pred ----------HHcCCCCCHHHHHHHHHh---cC-CCHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccchhh
Q 036794 597 ----------SKEGIEIDKDALKLIASR---SD-GSLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISDEK 652 (1152)
Q Consensus 597 ----------kkeGl~Id~dALelLAe~---s~-GDLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~ee~ 652 (1152)
.-..+.++++.++++++. ++ -+.|..+.++..+ +++.+ .++.+||+.++..+...-
T Consensus 252 ~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pdDv~~~a~~vL~HR 326 (350)
T CHL00081 252 LRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPKDIFKVITLCLRHR 326 (350)
T ss_pred CHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHHh
Confidence 013577899999888777 22 2577776666553 44444 499999998886654433
|
|
| >KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=4.2e-12 Score=143.66 Aligned_cols=191 Identities=23% Similarity=0.256 Sum_probs=131.8
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+|+||-|-+.++++|++.+.- -+.+.++|||||||||||.+|+++|++.++.+....
T Consensus 89 v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~--------- 159 (386)
T KOG0737|consen 89 VSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVS--------- 159 (386)
T ss_pred eehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceee---------
Confidence 4799999999999999987743 133458999999999999999999999887643211
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-------HHH----HHHHHHHh----
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-------DSW----SAISKVVD---- 549 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-------eaq----naLLklLE---- 549 (1152)
.+...+ --+.+-..++..+...+..=.+.+|||||+|.+.. ++- +.|.-.=+
T Consensus 160 ----~s~lt~---------KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s 226 (386)
T KOG0737|consen 160 ----VSNLTS---------KWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSS 226 (386)
T ss_pred ----ccccch---------hhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccC
Confidence 111111 11233344455544444444568999999998742 111 12222212
Q ss_pred hCCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHH
Q 036794 550 RAPRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTLE 627 (1152)
Q Consensus 550 epp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~LE 627 (1152)
.....|+++.|||.|..+++++++|+. +|.+.-|+..+..++|+-+++.+.++ ++-.+..++..+.| +-.++.+++.
T Consensus 227 ~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~ 305 (386)
T KOG0737|consen 227 KDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCR 305 (386)
T ss_pred CCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHH
Confidence 134468888899999999999999966 69999999999999999999988765 22237778888777 4455555554
Q ss_pred HHHH
Q 036794 628 QLSL 631 (1152)
Q Consensus 628 kLsL 631 (1152)
.+++
T Consensus 306 ~Aa~ 309 (386)
T KOG0737|consen 306 LAAL 309 (386)
T ss_pred HHhH
Confidence 4443
|
|
| >TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator | Back alignment and domain information |
|---|
Probab=99.39 E-value=2.1e-11 Score=143.57 Aligned_cols=213 Identities=13% Similarity=0.202 Sum_probs=134.6
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
.|.+++|....++.+...+.. ......++|+|++||||+++|++++....... .|+ ....|..+..... ..++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~----~~~-v~v~c~~~~~~~~~~~lf 211 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRKD----KRF-VAINCAAIPENLLESELF 211 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCC----CCe-EEEECCCCChHHHHHHhc
Confidence 567899988888777776654 33445689999999999999999998754322 111 1122222210000 0000
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
........+.. .........+.+++|||||++.|+...|..|+++|++. +.++.+|++|+..
T Consensus 212 g~~~~~~~~~~------~~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 285 (445)
T TIGR02915 212 GYEKGAFTGAV------KQTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDL 285 (445)
T ss_pred CCCCCCcCCCc------cCCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCH
Confidence 00000000000 00000011255789999999999999999999999862 2368899998753
Q ss_pred ------CcchHHHHccceE--EEecCCCh--hHHHHHH----HHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQK--FFFPKMKD--ADIIYTL----QWIASKEG---IEIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL----~~iakkeG---l~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.|..|+.. |.++++.. +++..++ ..++...+ ..+++++++.|..+ |+||+|++.|.+
T Consensus 286 ~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i 365 (445)
T TIGR02915 286 KRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGNVRELENKV 365 (445)
T ss_pred HHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCChHHHHHHHH
Confidence 2466778888875 55555543 2333333 33333334 45899999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQ 642 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~ 642 (1152)
++++.. +..|+.+++.
T Consensus 366 ~~a~~~~~~~~i~~~~l~ 383 (445)
T TIGR02915 366 KRAVIMAEGNQITAEDLG 383 (445)
T ss_pred HHHHHhCCCCcccHHHcC
Confidence 999876 3458877764
|
Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158). |
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.39 E-value=5.3e-12 Score=151.89 Aligned_cols=176 Identities=21% Similarity=0.303 Sum_probs=120.5
Q ss_pred CCcCcccCcHHHHHHHHHHHHh----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|+||-|-+++++.+...|.- | +.-.++|||||||||||.+|+|+|.+..-.+...
T Consensus 669 V~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSV------------ 736 (953)
T KOG0736|consen 669 VSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSV------------ 736 (953)
T ss_pred cchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEee------------
Confidence 4899999999999999988764 1 2234799999999999999999999865432211
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-------------HHHHHHHHHhh---
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-------------SWSAISKVVDR--- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-------------aqnaLLklLEe--- 550 (1152)
..+++..+ +-.-.-+.+|++++.++. +.+.|||+||+|.+.+. ....||.-|+.
T Consensus 737 ----KGPELLNM--YVGqSE~NVR~VFerAR~----A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~ 806 (953)
T KOG0736|consen 737 ----KGPELLNM--YVGQSEENVREVFERARS----AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSD 806 (953)
T ss_pred ----cCHHHHHH--HhcchHHHHHHHHHHhhc----cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccC
Confidence 11112111 111235679999998764 45699999999999542 34566666665
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHcc--ceE-EEecCCChh-HHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIISR--CQK-FFFPKMKDA-DIIYTLQWIASKEGIEIDKDA-LKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR--~qv-I~F~~p~~~-EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G 617 (1152)
...+|.+|.|||.||.|+++|++- +.. +.+.+...+ .-..+|+.+-++ +.+++++ +..||..++-
T Consensus 807 ~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrk--FkLdedVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 807 SSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRK--FKLDEDVDLVEIAKKCPP 877 (953)
T ss_pred CCCCceEEEecCCCccccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHH--ccCCCCcCHHHHHhhCCc
Confidence 446899999999999999999984 555 555555443 344555555544 3344443 6667777543
|
|
| >PRK08485 DNA polymerase III subunit delta'; Validated | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.8e-12 Score=137.25 Aligned_cols=125 Identities=18% Similarity=0.199 Sum_probs=112.8
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceE----
Q 036794 502 GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQK---- 577 (1152)
Q Consensus 502 s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qv---- 577 (1152)
..+++++++++++.+...|.. .+ +||+++|+|+.+++|+||++|||||.+++||++|+++.++++||+|||+.
T Consensus 35 ~~i~Vd~iReii~~~~~~~~~--~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~~ 111 (206)
T PRK08485 35 EEFKIEDAKEVIAEAYIAESE--EK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKRK 111 (206)
T ss_pred CCCCHHHHHHHHHHHhhCCCC--cE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheecccc
Confidence 368999999999999887753 34 56889999999999999999999999999999999999999999999996
Q ss_pred ---------EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036794 578 ---------FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 578 ---------I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs 630 (1152)
++|.+++..++.++|.. .+++++...+++++.|+....|.+|+++...++..
T Consensus 112 ~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l 172 (206)
T PRK08485 112 QKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEEL 172 (206)
T ss_pred ccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 77899999999999998 67888888999999999999999999988877753
|
|
| >PRK10733 hflB ATP-dependent metalloprotease; Reviewed | Back alignment and domain information |
|---|
Probab=99.38 E-value=8.9e-12 Score=153.84 Aligned_cols=209 Identities=17% Similarity=0.200 Sum_probs=142.9
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
....+|.++.|.+.++..|.+.+.. +.++.++||+||||||||++|++++++++..+... .
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~i--------s 217 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI--------S 217 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEE--------e
Confidence 3345789999998888777665532 34566799999999999999999999887542111 0
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLE 549 (1152)
+.. +.+. ....+...+++++..+... .+.||||||+|.+.. ...+.||..|+
T Consensus 218 ~~~--------~~~~--~~g~~~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~md 283 (644)
T PRK10733 218 GSD--------FVEM--FVGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMD 283 (644)
T ss_pred hHH--------hHHh--hhcccHHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhh
Confidence 000 0000 0112345677777776432 347999999999832 13456666666
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ....++||++||.++.+++++++ |+. .|.|+.|+.+++.++++.++....+.-+ -.+..+++.+.| +..++.
T Consensus 284 g~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~-~d~~~la~~t~G~sgadl~ 362 (644)
T PRK10733 284 GFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPD-IDAAIIARGTPGFSGADLA 362 (644)
T ss_pred cccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCc-CCHHHHHhhCCCCCHHHHH
Confidence 4 24578999999999999999986 775 5889999999999999988876543211 225668888777 555555
Q ss_pred HHHHHHHHh---C--CCCCHHHHHHHHh
Q 036794 624 MTLEQLSLL---G--QRISVPLVQELVG 646 (1152)
Q Consensus 624 n~LEkLsLl---g--~~IT~EdV~elVg 646 (1152)
+++..++.. . ..|+.+++.+++.
T Consensus 363 ~l~~eAa~~a~r~~~~~i~~~d~~~a~~ 390 (644)
T PRK10733 363 NLVNEAALFAARGNKRVVSMVEFEKAKD 390 (644)
T ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 555555443 2 3488888877764
|
|
| >TIGR02442 Cob-chelat-sub cobaltochelatase subunit | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.7e-11 Score=151.10 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=144.3
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-------cccCC-CCCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-------NCQSL-EQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-------~~~~~-e~~epcg~c~~c~~i~~g~ 491 (1152)
|.+|+||+.++..|.-++.....+ .|||+||+|||||++|++|++.+ +|.+. ....||+.|..|..+..+.
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g-~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~ 81 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIG-GVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPS 81 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCC-eEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhccccc
Confidence 899999999999998887777665 49999999999999999999998 23221 1236899999999876554
Q ss_pred c---cceEEeCCCC----CCCHHHHHHHHHHH--hhCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC--------
Q 036794 492 S---RNIKEVGPVG----NFDFESILDLLDNM--VTSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------- 551 (1152)
Q Consensus 492 ~---~dviEIdaas----~~~vdeIreLle~a--~~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------- 551 (1152)
. ..++.+.... -++..++...+..- ...+ ..+..+||||||++.|+...++.|+.+|++.
T Consensus 82 ~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~g~~~v~r~g 161 (633)
T TIGR02442 82 EQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAMGVNRVEREG 161 (633)
T ss_pred ccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhcCCEEEEECC
Confidence 3 1233322110 01111122222110 0011 1246689999999999999999999999863
Q ss_pred -----CCCEEEEEEcCCC-CcchHHHHccceE-EEecCCC-hhHHHHHHHHHHH--------------------------
Q 036794 552 -----PRRVVFILVSSSL-DALPHIIISRCQK-FFFPKMK-DADIIYTLQWIAS-------------------------- 597 (1152)
Q Consensus 552 -----p~~VifILaTN~~-dkL~~aL~SR~qv-I~F~~p~-~~EI~eiL~~iak-------------------------- 597 (1152)
+.++++|+++|-. ..++++|++|+.. |.+..+. .++..+++.....
T Consensus 162 ~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~a 241 (633)
T TIGR02442 162 LSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARA 241 (633)
T ss_pred ceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHH
Confidence 2456777766632 3588899999973 5555554 2333333322110
Q ss_pred ---HcCCCCCHHHHHHHHHhc---CC-CHHHHHHHHHHH---HHhC--CCCCHHHHHHHHhcc
Q 036794 598 ---KEGIEIDKDALKLIASRS---DG-SLRDAEMTLEQL---SLLG--QRISVPLVQELVGLI 648 (1152)
Q Consensus 598 ---keGl~Id~dALelLAe~s---~G-DLR~Ain~LEkL---sLlg--~~IT~EdV~elVg~v 648 (1152)
...+.++++++++|+..+ +- .+|..+.++.-+ +.+. ..|+.+||.+++..+
T Consensus 242 r~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 242 RSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELV 304 (633)
T ss_pred HHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 124667888888877763 11 356555554443 3333 247888877776543
|
A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis. |
| >KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.4e-12 Score=137.20 Aligned_cols=175 Identities=21% Similarity=0.265 Sum_probs=123.5
Q ss_pred CcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.++||-|.+..++.|.+++-- -+.|.++|+|||||||||.+|++.|...+..+.....
T Consensus 169 ~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAg---------- 238 (424)
T KOG0652|consen 169 QYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAG---------- 238 (424)
T ss_pred cccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcc----------
Confidence 568999999999999888743 2455689999999999999999999987765432211
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh-----
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR----- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe----- 550 (1152)
+.++.+. -.-+..-+++.+.-+ ....+.+|||||+|.+. .+.|..+|.+|..
T Consensus 239 ------PQLVQMf--IGdGAkLVRDAFaLA----KEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFs 306 (424)
T KOG0652|consen 239 ------PQLVQMF--IGDGAKLVRDAFALA----KEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFS 306 (424)
T ss_pred ------hHHHhhh--hcchHHHHHHHHHHh----hccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCC
Confidence 1111110 011233455554443 23455899999999873 3466777777665
Q ss_pred CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC
Q 036794 551 APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG 617 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G 617 (1152)
+...+-+|.+||..+.|+|+|++-+. .|.|+.|..+....+++-+.++.++ ++++ .+.|++.+++
T Consensus 307 s~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv--~~DvNfeELaRsTdd 375 (424)
T KOG0652|consen 307 SDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV--SDDVNFEELARSTDD 375 (424)
T ss_pred CccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC--CCCCCHHHHhhcccc
Confidence 45689999999999999999887554 5999999999998888877766554 4443 6667777543
|
|
| >TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN | Back alignment and domain information |
|---|
Probab=99.37 E-value=3.8e-11 Score=133.04 Aligned_cols=120 Identities=14% Similarity=0.139 Sum_probs=89.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhC----------------CCCEEEEEEcCCC-----CcchHHHHccceEEEecC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRA----------------PRRVVFILVSSSL-----DALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEep----------------p~~VifILaTN~~-----dkL~~aL~SR~qvI~F~~ 582 (1152)
.+.+++|||++.++++.++.|+.+|++. ++++++|+++|.. ..+++++++||..+.+..
T Consensus 105 ~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~ 184 (262)
T TIGR02640 105 EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDY 184 (262)
T ss_pred cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCC
Confidence 3469999999999999999999999861 1356788888754 257889999999999999
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc----------CCCHHHHHHHHHHHHHhCC--CCCHHHHHHHHhcc
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRS----------DGSLRDAEMTLEQLSLLGQ--RISVPLVQELVGLI 648 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s----------~GDLR~Ain~LEkLsLlg~--~IT~EdV~elVg~v 648 (1152)
|+.++..+++...+ .++++.++.++... .-.+|.++.+...+..++. .++.+++.++...+
T Consensus 185 P~~~~e~~Il~~~~-----~~~~~~~~~iv~~~~~~R~~~~~~~~~~r~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (262)
T TIGR02640 185 PDIDTETAILRAKT-----DVAEDSAATIVRLVREFRASGDEITSGLRASLMIAEVATQQDIPVDVDDEDFVDLCIDI 257 (262)
T ss_pred CCHHHHHHHHHHhh-----CCCHHHHHHHHHHHHHHHhhCCccCCcHHHHHHHHHHHHHcCCCCCCCcHHHHHHHHHH
Confidence 99888888887653 35666666665541 1137888888887776643 36777777766443
|
Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728). |
| >PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.8e-12 Score=145.88 Aligned_cols=188 Identities=23% Similarity=0.305 Sum_probs=119.1
Q ss_pred ccCcHHHHHHHHHHHHh----C-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 423 LVGQNLVAQALSNAVMR----R-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~----g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
|+||+.+++.|..++.. - .....+||+||||||||++|++||+.+++++.... |..+
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id--------~~~l 144 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIAD--------ATTL 144 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecc--------hhhc
Confidence 89999999999777632 1 01246999999999999999999999876532211 1111
Q ss_pred cCCCccceEEeCCCCCC--CHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPVGNF--DFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~--~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe 550 (1152)
. ..+.. +.+. +..++.........+.++||||||+|.++. ..|++||++||.
T Consensus 145 ~-----------~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg 213 (412)
T PRK05342 145 T-----------EAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEG 213 (412)
T ss_pred c-----------cCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhc
Confidence 1 01111 1222 223333221111225678999999999975 378999999985
Q ss_pred CC---------------------CCEEEEEEcCCC------------------------------C--------------
Q 036794 551 AP---------------------RRVVFILVSSSL------------------------------D-------------- 565 (1152)
Q Consensus 551 pp---------------------~~VifILaTN~~------------------------------d-------------- 565 (1152)
.. .++.||+..+.. .
T Consensus 214 ~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~ 293 (412)
T PRK05342 214 TVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKF 293 (412)
T ss_pred CeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHH
Confidence 21 233344322100 0
Q ss_pred cchHHHHccce-EEEecCCChhHHHHHHHH----H-------HHHcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHH
Q 036794 566 ALPHIIISRCQ-KFFFPKMKDADIIYTLQW----I-------ASKEGI--EIDKDALKLIASRS---DGSLRDAEMTLEQ 628 (1152)
Q Consensus 566 kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~----i-------akkeGl--~Id~dALelLAe~s---~GDLR~Ain~LEk 628 (1152)
-+.|.++.|+. ++.|.+++.+++..++.. + +..+++ .++++++++|++.. .-..|.+...|++
T Consensus 294 gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~ 373 (412)
T PRK05342 294 GLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEE 373 (412)
T ss_pred hhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 03566778887 588999999999888862 2 233454 58999999999972 2346666666666
Q ss_pred H
Q 036794 629 L 629 (1152)
Q Consensus 629 L 629 (1152)
.
T Consensus 374 ~ 374 (412)
T PRK05342 374 I 374 (412)
T ss_pred H
Confidence 4
|
|
| >PRK10923 glnG nitrogen regulation protein NR(I); Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.7e-11 Score=142.63 Aligned_cols=214 Identities=14% Similarity=0.176 Sum_probs=137.2
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
.|.+++|....+..+...+.. ......+||+|++|||||++|++++........ |+ ...+|..+..... ..++
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~----~~-i~i~c~~~~~~~~~~~lf 210 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRAKA----PF-IALNMAAIPKDLIESELF 210 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCC----Ce-EeeeCCCCCHHHHHHHhc
Confidence 477899998887777766654 344556999999999999999999987543221 11 1222322211000 0000
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
.-......+.... . ......+.++++||||++.|+...|..|+++|++. +.++.||++|+..
T Consensus 211 g~~~g~~~~~~~~-----~-~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l 284 (469)
T PRK10923 211 GHEKGAFTGANTI-----R-QGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNL 284 (469)
T ss_pred CCCCCCCCCCCcC-----C-CCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCH
Confidence 0000000000000 0 00011245679999999999999999999999873 2367899988743
Q ss_pred ------CcchHHHHccceE--EEecCCCh--hHHHHHHHHHH----HHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIA----SKEGI---EIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~ia----kkeGl---~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.|..|+.. |.++|+.. +++..++..++ ...+. .+++++++.|..+ |+||+|++.|.+
T Consensus 285 ~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i 364 (469)
T PRK10923 285 EQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTC 364 (469)
T ss_pred HHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCChHHHHHHHH
Confidence 2477789999864 55566543 35554444443 33333 4899999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQE 643 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~e 643 (1152)
++++.. +..|+.+++..
T Consensus 365 ~~~~~~~~~~~i~~~~l~~ 383 (469)
T PRK10923 365 RWLTVMAAGQEVLIQDLPG 383 (469)
T ss_pred HHHHHhCCCCcccHHHCcH
Confidence 999776 44688888754
|
|
| >PRK10787 DNA-binding ATP-dependent protease La; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.5e-11 Score=154.39 Aligned_cols=208 Identities=19% Similarity=0.279 Sum_probs=139.9
Q ss_pred cccCcHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 422 DLVGQNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
+..|.+.+++.+.+++.. ...+..++|+||||+|||++++.+|+.++.... .+..+...+..
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~-------------~i~~~~~~d~~ 389 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV-------------RMALGGVRDEA 389 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-------------EEEcCCCCCHH
Confidence 488999999998876653 123457999999999999999999998875421 11112111111
Q ss_pred EeCCCC--C--CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH----HHHHHHHHhh---------------CCC
Q 036794 497 EVGPVG--N--FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS----WSAISKVVDR---------------APR 553 (1152)
Q Consensus 497 EIdaas--~--~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea----qnaLLklLEe---------------pp~ 553 (1152)
++.... . .....+.+.+..+ . ....||+|||+|.++... +++|+.+|+. .-.
T Consensus 390 ~i~g~~~~~~g~~~G~~~~~l~~~---~--~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls 464 (784)
T PRK10787 390 EIRGHRRTYIGSMPGKLIQKMAKV---G--VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLS 464 (784)
T ss_pred HhccchhccCCCCCcHHHHHHHhc---C--CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCC
Confidence 111100 0 0112233333222 1 234699999999998764 5899999974 126
Q ss_pred CEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhc--CCCHHH
Q 036794 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIAS-----K-----EGIEIDKDALKLIASRS--DGSLRD 621 (1152)
Q Consensus 554 ~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak-----k-----eGl~Id~dALelLAe~s--~GDLR~ 621 (1152)
+++||+++|... ++++|++||.+|.|.+++.+++..+++..+. + ..+.++++++.+|++.+ +-..|.
T Consensus 465 ~v~~i~TaN~~~-i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~ 543 (784)
T PRK10787 465 DVMFVATSNSMN-IPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRS 543 (784)
T ss_pred ceEEEEcCCCCC-CCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcH
Confidence 888999888875 9999999999999999999999888776663 1 13568999999999763 225666
Q ss_pred HHHHHHHHHHh-------CC-----CCCHHHHHHHHhcc
Q 036794 622 AEMTLEQLSLL-------GQ-----RISVPLVQELVGLI 648 (1152)
Q Consensus 622 Ain~LEkLsLl-------g~-----~IT~EdV~elVg~v 648 (1152)
+...|++++-. ++ .|+.+++.+.++..
T Consensus 544 LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 544 LEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 66666665311 21 36777777777754
|
|
| >COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.5e-11 Score=143.00 Aligned_cols=215 Identities=22% Similarity=0.277 Sum_probs=146.4
Q ss_pred chhhhhCCCCcCccc-C--cHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 410 NLTQKYMPRTFRDLV-G--QNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 410 ~l~eKyRP~sFddLV-G--Qe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+..+| +|+++| | +..+......+... |...+.++||||.|.|||++++++++++....+..
T Consensus 79 ~l~~~y---tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a----------- 144 (408)
T COG0593 79 GLNPKY---TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNA----------- 144 (408)
T ss_pred cCCCCC---chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCc-----------
Confidence 455566 588866 4 33444444444443 33455689999999999999999999887553221
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHH-H-hhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhCCC-CEEEEEE
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDN-M-VTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRAPR-RVVFILV 560 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~-a-~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEepp~-~VifILa 560 (1152)
-++.+.+. .+-.+-+..+.+. + .+.... ...+++||+++.+... .+..|..+++.... .-.+|++
T Consensus 145 --------~v~y~~se-~f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvlt 214 (408)
T COG0593 145 --------RVVYLTSE-DFTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLT 214 (408)
T ss_pred --------eEEeccHH-HHHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEE
Confidence 12332211 1111111222110 0 001111 3479999999998654 46677777666322 2256666
Q ss_pred cCCC-C---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-
Q 036794 561 SSSL-D---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL- 632 (1152)
Q Consensus 561 TN~~-d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl- 632 (1152)
+..+ . .+.+.|+||+. .+.+.+|+.+.+..+|...++..++.++++++.+|+.....|+|++...|+++..+
T Consensus 215 sdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a 294 (408)
T COG0593 215 SDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFA 294 (408)
T ss_pred cCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 6543 2 35578999977 68999999999999999999999999999999999999999999999999998655
Q ss_pred ---CCCCCHHHHHHHHhcc
Q 036794 633 ---GQRISVPLVQELVGLI 648 (1152)
Q Consensus 633 ---g~~IT~EdV~elVg~v 648 (1152)
+..||.+.|.+++...
T Consensus 295 ~~~~~~iTi~~v~e~L~~~ 313 (408)
T COG0593 295 LFTKRAITIDLVKEILKDL 313 (408)
T ss_pred HhcCccCcHHHHHHHHHHh
Confidence 3469999999888653
|
|
| >COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=5.4e-12 Score=151.80 Aligned_cols=191 Identities=21% Similarity=0.332 Sum_probs=136.9
Q ss_pred cccCcHHHHHHHHHHHH-----hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 422 DLVGQNLVAQALSNAVM-----RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~-----~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
|=.|-+.+++.+.+.+. ...-++.++|.||||+|||++++.||++++..+ +.+..|.-+|.-
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rkf-------------vR~sLGGvrDEA 390 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKF-------------VRISLGGVRDEA 390 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCE-------------EEEecCccccHH
Confidence 34577777777665543 234457899999999999999999999999764 233444444444
Q ss_pred EeCCCCCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhh---------------CCC
Q 036794 497 EVGPVGNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDR---------------APR 553 (1152)
Q Consensus 497 EIdaas~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEe---------------pp~ 553 (1152)
|+-+...+- .+.|.+-+..+. ...-|++|||||+|+.+ -..+||.+|+- .-.
T Consensus 391 EIRGHRRTYIGamPGrIiQ~mkka~-----~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS 465 (782)
T COG0466 391 EIRGHRRTYIGAMPGKIIQGMKKAG-----VKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLS 465 (782)
T ss_pred HhccccccccccCChHHHHHHHHhC-----CcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchh
Confidence 443322221 133333333332 23469999999999754 45689988863 126
Q ss_pred CEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHH-----HHcC-----CCCCHHHHHHHHHhc--CCCHHH
Q 036794 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA-----SKEG-----IEIDKDALKLIASRS--DGSLRD 621 (1152)
Q Consensus 554 ~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia-----kkeG-----l~Id~dALelLAe~s--~GDLR~ 621 (1152)
+|+||+++|..+.+|.+|+.|..+|++..++..|-.++.+.++ +..| +.|+++|+..|+++. +-.+|.
T Consensus 466 ~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~ 545 (782)
T COG0466 466 KVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRN 545 (782)
T ss_pred heEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhH
Confidence 8999999999999999999999999999999998887766543 3344 469999999999883 346888
Q ss_pred HHHHHHHHH
Q 036794 622 AEMTLEQLS 630 (1152)
Q Consensus 622 Ain~LEkLs 630 (1152)
+...|.+++
T Consensus 546 LeR~i~ki~ 554 (782)
T COG0466 546 LEREIAKIC 554 (782)
T ss_pred HHHHHHHHH
Confidence 887777764
|
|
| >TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.9e-11 Score=132.66 Aligned_cols=217 Identities=15% Similarity=0.179 Sum_probs=131.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc--CCCccceEEeCCCCC
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD--RGKSRNIKEVGPVGN 503 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~--~g~~~dviEIdaas~ 503 (1152)
+..+...+...+..+ ++.++|+||+|+|||++++.+++.+.+..... |..+....... .......+.+.....
T Consensus 28 ~~~~~~~l~~~~~~~--~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~---~~~~~~~~~~~~~l~~i~~~lG~~~~~~ 102 (269)
T TIGR03015 28 HKRAMAYLEYGLSQR--EGFILITGEVGAGKTTLIRNLLKRLDQERVVA---AKLVNTRVDAEDLLRMVAADFGLETEGR 102 (269)
T ss_pred HHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEE---eeeeCCCCCHHHHHHHHHHHcCCCCCCC
Confidence 445566666555533 44689999999999999999999877432110 00000000000 000000001111111
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---CCCEEEEEEcCCCC---c----chHHHHc
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---PRRVVFILVSSSLD---A----LPHIIIS 573 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---p~~VifILaTN~~d---k----L~~aL~S 573 (1152)
.....+..+.+.+......+...+|+|||++.+.....+.|..+.+.. ...+.||++.. ++ . -...+.+
T Consensus 103 ~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~-~~~~~~l~~~~~~~l~~ 181 (269)
T TIGR03015 103 DKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQ-PEFRETLQSPQLQQLRQ 181 (269)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCC-HHHHHHHcCchhHHHHh
Confidence 111222223222211122355679999999999988877665544321 22334444442 22 1 1234667
Q ss_pred cce-EEEecCCChhHHHHHHHHHHHHcC----CCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----CCCCCHHHHHH
Q 036794 574 RCQ-KFFFPKMKDADIIYTLQWIASKEG----IEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-----GQRISVPLVQE 643 (1152)
Q Consensus 574 R~q-vI~F~~p~~~EI~eiL~~iakkeG----l~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-----g~~IT~EdV~e 643 (1152)
|+. .+.+++++.+++.+++...+...| ..+++++++.|++.++|++|.+...++.+... .+.|+.++|.+
T Consensus 182 r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~~~i~~~~v~~ 261 (269)
T TIGR03015 182 RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEKREIGGEEVRE 261 (269)
T ss_pred heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 744 688999999999999999988665 36999999999999999999988877776433 34699999999
Q ss_pred HHhcc
Q 036794 644 LVGLI 648 (1152)
Q Consensus 644 lVg~v 648 (1152)
++...
T Consensus 262 ~~~~~ 266 (269)
T TIGR03015 262 VIAEI 266 (269)
T ss_pred HHHHh
Confidence 88654
|
Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems. |
| >PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.34 E-value=3.5e-11 Score=150.24 Aligned_cols=224 Identities=14% Similarity=0.161 Sum_probs=149.1
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|+++-+-..++.++|.+..+..+...+.+.... .+||+||||||||++|+.+|..+.....+. .. ..|..+..
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~-n~LLvGppGvGKT~lae~la~~i~~~~vP~----~l-~~~~~~~l 248 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGDVPE----VM-ADCTIYSL 248 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCC-CeEEECCCCCCHHHHHHHHHHHHHhcCCCc----hh-cCCeEEec
Confidence 3444445556889999999999999888875444 478999999999999999998764322111 00 11111100
Q ss_pred CCccceEEeCCCCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhCCCCEEEE
Q 036794 490 GKSRNIKEVGPVGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 490 g~~~dviEIdaas~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLEepp~~VifI 558 (1152)
.. ..+ +.+.... . ...+..+++.+.. ....||||||+|.+. .++.+.|..+|.. ..+.+|
T Consensus 249 ~~-~~l--laG~~~~Ge~e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~--g~i~vI 319 (758)
T PRK11034 249 DI-GSL--LAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GKIRVI 319 (758)
T ss_pred cH-HHH--hcccchhhhHHHHHHHHHHHHHh----cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhC--CCeEEE
Confidence 00 000 0001111 1 2335566665543 234799999999872 2234556666665 678999
Q ss_pred EEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCC------CHHHHH
Q 036794 559 LVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS----KEGIEIDKDALKLIASRSDG------SLRDAE 623 (1152)
Q Consensus 559 LaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak----keGl~Id~dALelLAe~s~G------DLR~Ai 623 (1152)
++||..+ ..+++|.+||+.|.+++|+.++...+|+.+.. ..++.|+++|+..++..+.. -+..++
T Consensus 320 gATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKai 399 (758)
T PRK11034 320 GSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAI 399 (758)
T ss_pred ecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHH
Confidence 9998653 36889999999999999999999999987654 35788999999988776432 345889
Q ss_pred HHHHHHHHhC---------CCCCHHHHHHHHhcc
Q 036794 624 MTLEQLSLLG---------QRISVPLVQELVGLI 648 (1152)
Q Consensus 624 n~LEkLsLlg---------~~IT~EdV~elVg~v 648 (1152)
.+|+.++... ..|+.++|.+++...
T Consensus 400 dlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 400 DVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred HHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 9999886421 237778888877543
|
|
| >KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.6e-11 Score=140.47 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=122.1
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCC-CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKV-GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri-~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
.|.+|+.|+-.+..++.|.+-+.. |+. ..+||||||||||||+++.|+|+.|++..
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydI------------ 263 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDI------------ 263 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCce------------
Confidence 467899999888877777765543 111 14799999999999999999999998752
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH------------------HHHHHHH
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP------------------DSWSAIS 545 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~------------------eaqnaLL 545 (1152)
..++-.....-++++.|+... ..+.||+|.+||.-.. -.+.-||
T Consensus 264 ------------ydLeLt~v~~n~dLr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLL 325 (457)
T KOG0743|consen 264 ------------YDLELTEVKLDSDLRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLL 325 (457)
T ss_pred ------------EEeeeccccCcHHHHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeehHHhh
Confidence 222222222334588888775 4568999999997511 1355799
Q ss_pred HHHhhCC----CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 546 KVVDRAP----RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 546 klLEepp----~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
.+++..- ..-++||+||.+++|+|+|++++. .|.+.--+...+......++.-..
T Consensus 326 NfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~------------------ 387 (457)
T KOG0743|consen 326 NFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE------------------ 387 (457)
T ss_pred hhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC------------------
Confidence 9998743 355899999999999999999665 377766666555554444322111
Q ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHh
Q 036794 619 LRDAEMTLEQLSLLGQRISVPLVQELVG 646 (1152)
Q Consensus 619 LR~Ain~LEkLsLlg~~IT~EdV~elVg 646 (1152)
--.+...+++ ...+..||+.+|.+.+-
T Consensus 388 ~h~L~~eie~-l~~~~~~tPA~V~e~lm 414 (457)
T KOG0743|consen 388 DHRLFDEIER-LIEETEVTPAQVAEELM 414 (457)
T ss_pred CcchhHHHHH-HhhcCccCHHHHHHHHh
Confidence 1233334444 22244688888877653
|
|
| >KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=4e-11 Score=129.40 Aligned_cols=171 Identities=19% Similarity=0.228 Sum_probs=119.1
Q ss_pred chhhhhCCC-CcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC
Q 036794 410 NLTQKYMPR-TFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK 476 (1152)
Q Consensus 410 ~l~eKyRP~-sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e 476 (1152)
.+...-+|. ++.|+-|.+-.++.+++++.- -..+.++|+|||||||||.+|+++|+.....+....
T Consensus 143 ml~~~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvv- 221 (408)
T KOG0727|consen 143 MLGPDEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVV- 221 (408)
T ss_pred ccCCCCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeec-
Confidence 333344443 789999988888888887753 234568999999999999999999987554422110
Q ss_pred CCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHH
Q 036794 477 PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAIS 545 (1152)
Q Consensus 477 pcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLL 545 (1152)
|+.. + ...-.-+..-+++++.-+.. ....+|||||+|.+.. +.+..|+
T Consensus 222 -------------gsef--v--qkylgegprmvrdvfrlake----napsiifideidaiatkrfdaqtgadrevqril~ 280 (408)
T KOG0727|consen 222 -------------GSEF--V--QKYLGEGPRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREVQRILI 280 (408)
T ss_pred -------------cHHH--H--HHHhccCcHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHHHHHHH
Confidence 1100 0 00111234556676665543 3447999999998743 4566777
Q ss_pred HHHhh-----CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCC
Q 036794 546 KVVDR-----APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 546 klLEe-----pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~ 602 (1152)
.+|.. ...++-+|++||..+-++|+|++.+. .|.|+.++..+..-.+..++.+.++.
T Consensus 281 ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls 345 (408)
T KOG0727|consen 281 ELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS 345 (408)
T ss_pred HHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC
Confidence 77765 55799999999999999999998655 59999888888777777777766554
|
|
| >KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.32 E-value=6.2e-12 Score=137.86 Aligned_cols=210 Identities=17% Similarity=0.204 Sum_probs=138.7
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
+|-.-.+|.|+-|.+..++.+++++.- -+.+.+++|||+||||||.+|+++|+.....+...
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRv------ 250 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRV------ 250 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhh------
Confidence 343345789999999999999998864 24556899999999999999999998755443211
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHh
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVD 549 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLE 549 (1152)
.|+. ++ .....-+..-++++|.-+... ...++||||||.+.. +.|..+|.+|+
T Consensus 251 --------vGse--Li--QkylGdGpklvRqlF~vA~e~----apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLN 314 (440)
T KOG0726|consen 251 --------VGSE--LI--QKYLGDGPKLVRELFRVAEEH----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLN 314 (440)
T ss_pred --------hhHH--HH--HHHhccchHHHHHHHHHHHhc----CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHH
Confidence 0111 00 011123445677777665432 347999999998832 35667777776
Q ss_pred h-----CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHh----cC
Q 036794 550 R-----APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASR----SD 616 (1152)
Q Consensus 550 e-----pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~----s~ 616 (1152)
. ...++-+|++||..+.|+|+|++... .|.|+.|+......++.-+.. ++.+..++ ++.++.. ++
T Consensus 315 QldGFdsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs--~Mtl~~dVnle~li~~kddlSG 392 (440)
T KOG0726|consen 315 QLDGFDSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTS--RMTLAEDVNLEELIMTKDDLSG 392 (440)
T ss_pred hccCccccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEEeec--ccchhccccHHHHhhccccccc
Confidence 5 34689999999999999999998765 499999988776665543322 23333332 3333332 55
Q ss_pred CCHHHHHHHHHHHHHhCC--CCCHHHHHHHHh
Q 036794 617 GSLRDAEMTLEQLSLLGQ--RISVPLVQELVG 646 (1152)
Q Consensus 617 GDLR~Ain~LEkLsLlg~--~IT~EdV~elVg 646 (1152)
.++..+..+.--+++-.. .++.+|+.....
T Consensus 393 AdIkAictEaGllAlRerRm~vt~~DF~ka~e 424 (440)
T KOG0726|consen 393 ADIKAICTEAGLLALRERRMKVTMEDFKKAKE 424 (440)
T ss_pred ccHHHHHHHHhHHHHHHHHhhccHHHHHHHHH
Confidence 566666666555555533 477777766553
|
|
| >KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=9.5e-12 Score=148.83 Aligned_cols=191 Identities=23% Similarity=0.365 Sum_probs=137.7
Q ss_pred cccCcHHHHHHHHHHHHhCCC-----CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 422 DLVGQNLVAQALSNAVMRRKV-----GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri-----~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
|=.|-+++++.+.+.|.-++. +..+.|+||||+|||++|+.||++++..+. .+..|.-.|+-
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf-------------RfSvGG~tDvA 478 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF-------------RFSVGGMTDVA 478 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE-------------EEeccccccHH
Confidence 456778888888877755432 458999999999999999999999998753 23333334444
Q ss_pred EeCCCCCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH----HHHHHHHHHHhh---------------CCC
Q 036794 497 EVGPVGNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP----DSWSAISKVVDR---------------APR 553 (1152)
Q Consensus 497 EIdaas~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~----eaqnaLLklLEe---------------pp~ 553 (1152)
++-+...+- ...+.+.+..+. -..-+|+|||+|++.. +-..+||.+|+- .-.
T Consensus 479 eIkGHRRTYVGAMPGkiIq~LK~v~-----t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLS 553 (906)
T KOG2004|consen 479 EIKGHRRTYVGAMPGKIIQCLKKVK-----TENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLS 553 (906)
T ss_pred hhcccceeeeccCChHHHHHHHhhC-----CCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchh
Confidence 433221111 244555555553 2346999999999864 235688888763 125
Q ss_pred CEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHH-----H-----cCCCCCHHHHHHHHHhc--CCCHHH
Q 036794 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIAS-----K-----EGIEIDKDALKLIASRS--DGSLRD 621 (1152)
Q Consensus 554 ~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak-----k-----eGl~Id~dALelLAe~s--~GDLR~ 621 (1152)
.|.||+++|..+.+|++|+.|..+|.+.-+..+|-+.+.+.++- . +.++|+++|+..|+++. +-.+|.
T Consensus 554 kVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRn 633 (906)
T KOG2004|consen 554 KVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRN 633 (906)
T ss_pred heEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHH
Confidence 78999999999999999999999999999999988887666542 2 34579999988887772 346888
Q ss_pred HHHHHHHHH
Q 036794 622 AEMTLEQLS 630 (1152)
Q Consensus 622 Ain~LEkLs 630 (1152)
+...|++++
T Consensus 634 Lqk~iekI~ 642 (906)
T KOG2004|consen 634 LQKQIEKIC 642 (906)
T ss_pred HHHHHHHHH
Confidence 888877763
|
|
| >TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB | Back alignment and domain information |
|---|
Probab=99.31 E-value=4e-11 Score=152.41 Aligned_cols=205 Identities=17% Similarity=0.198 Sum_probs=148.2
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++.+|..|+.++|+++.+..+...+.+....+ .||+||||+|||++|+.|+..+.....+.. .
T Consensus 160 ~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n-~lL~G~pGvGKT~l~~~la~~i~~~~~p~~----l------- 227 (852)
T TIGR03346 160 ARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVNGDVPES----L------- 227 (852)
T ss_pred hhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCc-eEEEcCCCCCHHHHHHHHHHHHhccCCchh----h-------
Confidence 4578899999999999999999999998887766554 679999999999999999998753321110 0
Q ss_pred cCCCccceEEeCCC------CCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGPV------GNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaa------s~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEep 551 (1152)
. ...++.++.. ... . ...+..+++.+... ....||||||+|.+.. ++.+.|..+++.
T Consensus 228 -~--~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~- 300 (852)
T TIGR03346 228 -K--NKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKS---EGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALAR- 300 (852)
T ss_pred -c--CCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhc---CCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhc-
Confidence 0 0112222211 111 1 23566677766432 3457999999998852 345666666654
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC---C-
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG---S- 618 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G---D- 618 (1152)
..+.+|++|+..+ .+++++.+||+.|.++.|+.++...+|+.+... .++.++++++..++..+.+ |
T Consensus 301 -g~i~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r 379 (852)
T TIGR03346 301 -GELHCIGATTLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDR 379 (852)
T ss_pred -CceEEEEeCcHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhcccccccc
Confidence 6789999998653 368899999999999999999999988877654 4677899999988877553 3
Q ss_pred --HHHHHHHHHHHHHh
Q 036794 619 --LRDAEMTLEQLSLL 632 (1152)
Q Consensus 619 --LR~Ain~LEkLsLl 632 (1152)
+..|+.+|+.++..
T Consensus 380 ~lPdkAidlld~a~a~ 395 (852)
T TIGR03346 380 FLPDKAIDLIDEAAAR 395 (852)
T ss_pred CCchHHHHHHHHHHHH
Confidence 56799999987643
|
Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins. |
| >KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=3.1e-11 Score=130.18 Aligned_cols=215 Identities=17% Similarity=0.246 Sum_probs=141.0
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCC
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epc 478 (1152)
..+|....+++-+-|-+..+..+++.|.-. ..|.++|||||||||||.+|+++|....|.+...
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firv---- 212 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRV---- 212 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEe----
Confidence 355554445555556788888888777541 2235799999999999999999999877763211
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHH
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKV 547 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLkl 547 (1152)
.|+..--.++ .-+..-++++|--++. ..+.+||.||||.+. .+.|..+|.+
T Consensus 213 ----------sgselvqk~i----gegsrmvrelfvmare----hapsiifmdeidsigs~r~e~~~ggdsevqrtmlel 274 (404)
T KOG0728|consen 213 ----------SGSELVQKYI----GEGSRMVRELFVMARE----HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLEL 274 (404)
T ss_pred ----------chHHHHHHHh----hhhHHHHHHHHHHHHh----cCCceEeeecccccccccccCCCCccHHHHHHHHHH
Confidence 1111000001 1233446666655433 334799999999873 3467777777
Q ss_pred Hhh-----CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-C
Q 036794 548 VDR-----APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-S 618 (1152)
Q Consensus 548 LEe-----pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-D 618 (1152)
|.. ...++-+|++||..+.++++|++.+. .|.|++|+.+...++|+-..++.++.-. --+..+|+..+| +
T Consensus 275 lnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rg-i~l~kiaekm~gas 353 (404)
T KOG0728|consen 275 LNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRG-INLRKIAEKMPGAS 353 (404)
T ss_pred HHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcc-cCHHHHHHhCCCCc
Confidence 665 45689999999999999999998765 4999999999999999877776543210 125567777555 4
Q ss_pred HHHHHHHHHHHHHh---CCC--CCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLL---GQR--ISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLl---g~~--IT~EdV~elVg~v 648 (1152)
-.++...+-.+.+| ..+ +|.+|++-+++.+
T Consensus 354 gaevk~vcteagm~alrerrvhvtqedfemav~kv 388 (404)
T KOG0728|consen 354 GAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKV 388 (404)
T ss_pred cchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHH
Confidence 44555555554444 222 6777777666543
|
|
| >KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=5.3e-11 Score=135.19 Aligned_cols=158 Identities=22% Similarity=0.287 Sum_probs=115.4
Q ss_pred cCcccCcHHHHHHHHHHHHh-------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc
Q 036794 420 FRDLVGQNLVAQALSNAVMR-------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS 492 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~ 492 (1152)
|+++|-+......|...... ...-..+|||||||||||.+|+-||...+-.. .+..|..
T Consensus 354 l~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDY--------------A~mTGGD 419 (630)
T KOG0742|consen 354 LEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDY--------------AIMTGGD 419 (630)
T ss_pred cCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCce--------------ehhcCCC
Confidence 89999988877777654432 11123799999999999999999999866442 1222221
Q ss_pred cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHH---HHHHHHHHHhhCCCCEEEEEE
Q 036794 493 RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPD---SWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 493 ~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~e---aqnaLLklLEepp~~VifILa 560 (1152)
+.|.+..++..|-++|+.+... .++-++||||+|.+ +.+ +.|+||----+...+++++++
T Consensus 420 -----VAPlG~qaVTkiH~lFDWakkS---~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGdqSrdivLvlA 491 (630)
T KOG0742|consen 420 -----VAPLGAQAVTKIHKLFDWAKKS---RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSRDIVLVLA 491 (630)
T ss_pred -----ccccchHHHHHHHHHHHHHhhc---ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcccccceEEEec
Confidence 2233445677788888887544 45568999999976 222 344444433446789999999
Q ss_pred cCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHc
Q 036794 561 SSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKE 599 (1152)
Q Consensus 561 TN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakke 599 (1152)
||.|..++-++-.|+. ++.|+.|..++...+|..++.++
T Consensus 492 tNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 492 TNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred cCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 9999999999999998 69999999999999888777653
|
|
| >KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.2e-12 Score=136.39 Aligned_cols=176 Identities=19% Similarity=0.258 Sum_probs=124.5
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.++.|+-|..+.++.|.+.+... ..+.++|+|||||||||.+|+++|+..+. |+
T Consensus 174 vty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtda--------------cf 239 (435)
T KOG0729|consen 174 VTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDA--------------CF 239 (435)
T ss_pred cccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCc--------------eE
Confidence 47899999999999998887652 33458999999999999999999976542 22
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
--..|+..-- ..-.-+..-++++++-+.. .+-.+||+||+|.+. .+.|..+|.++..
T Consensus 240 irvigselvq----kyvgegarmvrelf~mart----kkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgf 311 (435)
T KOG0729|consen 240 IRVIGSELVQ----KYVGEGARMVRELFEMART----KKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGF 311 (435)
T ss_pred EeehhHHHHH----HHhhhhHHHHHHHHHHhcc----cceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCC
Confidence 2111211100 1112345667888877653 344799999999873 3456677777665
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G 617 (1152)
|..++-++++||.++.|+++|++... .+.|..|+.+....+++-+++.. .++.+. .++|+..++.
T Consensus 312 dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksm--sverdir~ellarlcpn 381 (435)
T KOG0729|consen 312 DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSM--SVERDIRFELLARLCPN 381 (435)
T ss_pred CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCcccccceeEEEecccc--ccccchhHHHHHhhCCC
Confidence 66799999999999999999988655 59999999988877776555543 344443 5666666544
|
|
| >PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.3e-11 Score=119.74 Aligned_cols=109 Identities=28% Similarity=0.431 Sum_probs=83.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC------CCCCHHHHHHHHHHHhhC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV------GNFDFESILDLLDNMVTS 519 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa------s~~~vdeIreLle~a~~~ 519 (1152)
+||+||||||||++|+.+|+.++.. +++++.. .......+..++..+...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~------------------------~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~ 56 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFP------------------------FIEIDGSELISSYAGDSEQKIRDFFKKAKKS 56 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSE------------------------EEEEETTHHHTSSTTHHHHHHHHHHHHHHHT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccc------------------------ccccccccccccccccccccccccccccccc
Confidence 6899999999999999999998643 2222211 112345677777776544
Q ss_pred CCCCCceEEEEeCCCCCCHHH-----------HHHHHHHHhhCCC---CEEEEEEcCCCCcchHHHH-ccceE-EEec
Q 036794 520 RPPSQYRIFVFDDCDTLSPDS-----------WSAISKVVDRAPR---RVVFILVSSSLDALPHIII-SRCQK-FFFP 581 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~ea-----------qnaLLklLEepp~---~VifILaTN~~dkL~~aL~-SR~qv-I~F~ 581 (1152)
. ...||||||+|.+.... .+.|+..++.... .++||++||.++.+++++. +||.. |.|+
T Consensus 57 ~---~~~vl~iDe~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 57 A---KPCVLFIDEIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp S---TSEEEEEETGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-
T ss_pred c---cceeeeeccchhcccccccccccccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcC
Confidence 3 35899999999997765 7788999988554 5999999999999999999 99985 6554
|
Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G .... |
| >PRK10865 protein disaggregation chaperone; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.1e-11 Score=154.61 Aligned_cols=205 Identities=16% Similarity=0.189 Sum_probs=146.1
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+++++.+|..+++++|+++.+..+...+.+...++ +||+||||||||++|+.||..+.....+..
T Consensus 165 ~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n-~lL~G~pGvGKT~l~~~la~~i~~~~vp~~------------ 231 (857)
T PRK10865 165 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPEG------------ 231 (857)
T ss_pred hhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCc-eEEECCCCCCHHHHHHHHHHHhhcCCCchh------------
Confidence 4578889999999999999999998888887766554 689999999999999999998754321110
Q ss_pred cCCCccceEEeCC------CCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGP------VGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIda------as~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEep 551 (1152)
..+ ..++.++. .... . ...++.+++.+... ....||||||+|.+.. ++.+.|...|+.
T Consensus 232 l~~--~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~---~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~- 305 (857)
T PRK10865 232 LKG--RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR- 305 (857)
T ss_pred hCC--CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHc---CCCeEEEEecHHHhccCCCCccchhHHHHhcchhhc-
Confidence 000 11222211 1111 1 23467777765432 3457999999999853 257778888865
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC-----
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG----- 617 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G----- 617 (1152)
..+.+|++|+..+ .+++++.+||+.|.+..|+.++...+|+.+... .++.++++++...+..+.+
T Consensus 306 -g~l~~IgaTt~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~ 384 (857)
T PRK10865 306 -GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADR 384 (857)
T ss_pred -CCCeEEEcCCCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCC
Confidence 6889999998655 378899999999999999999999988877654 3678899988876555432
Q ss_pred -CHHHHHHHHHHHHHh
Q 036794 618 -SLRDAEMTLEQLSLL 632 (1152)
Q Consensus 618 -DLR~Ain~LEkLsLl 632 (1152)
-...|+.+++.++..
T Consensus 385 ~~pdkAi~LiD~aaa~ 400 (857)
T PRK10865 385 QLPDKAIDLIDEAASS 400 (857)
T ss_pred CCChHHHHHHHHHhcc
Confidence 234566677766543
|
|
| >PRK15115 response regulator GlrR; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.7e-10 Score=136.03 Aligned_cols=214 Identities=16% Similarity=0.129 Sum_probs=129.7
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEI 498 (1152)
..++|....+..+...+.. ......++|+|++|||||++|+++++....... | .....|..+..... ..++..
T Consensus 134 ~~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~----~-f~~i~c~~~~~~~~~~~lfg~ 208 (444)
T PRK15115 134 EAIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRASK----P-FIAINCGALPEQLLESELFGH 208 (444)
T ss_pred hcccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCCCC----C-eEEEeCCCCCHHHHHHHhcCC
Confidence 3578877666555444333 444556899999999999999999987543211 1 11122222210000 000000
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCCC---
Q 036794 499 GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSSL--- 564 (1152)
Q Consensus 499 daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~~--- 564 (1152)
......+... ........+..++|||||++.|+...|..|+++|++.. .++++|++|+..
T Consensus 209 ~~~~~~~~~~------~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~ 282 (444)
T PRK15115 209 ARGAFTGAVS------NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPK 282 (444)
T ss_pred CcCCCCCCcc------CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHH
Confidence 0000000000 00000112456799999999999999999999998732 267888888743
Q ss_pred ----CcchHHHHccceE--EEecCCCh--hHHHHHHHHHHH----HcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHHH
Q 036794 565 ----DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIAS----KEG---IEIDKDALKLIASR-SDGSLRDAEMTLEQ 628 (1152)
Q Consensus 565 ----dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~iak----keG---l~Id~dALelLAe~-s~GDLR~Ain~LEk 628 (1152)
..+.+.+..++.. |.++++.. +++..++..+++ ..+ ..++++|++.|..+ |+||+|++.|.|++
T Consensus 283 ~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~ 362 (444)
T PRK15115 283 AMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQ 362 (444)
T ss_pred HHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHH
Confidence 1355667777775 44454433 244444444433 333 24899999999999 89999999999999
Q ss_pred HHHh--CCCCCHHHHHHHH
Q 036794 629 LSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 629 LsLl--g~~IT~EdV~elV 645 (1152)
++.. +..|+.+++...+
T Consensus 363 ~~~~~~~~~i~~~~l~~~~ 381 (444)
T PRK15115 363 CVALTSSPVISDALVEQAL 381 (444)
T ss_pred HHHhCCCCccChhhhhhhh
Confidence 8766 3468888876544
|
|
| >PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=2.6e-10 Score=134.65 Aligned_cols=216 Identities=13% Similarity=0.159 Sum_probs=132.9
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
.+..++|....+..+...+.. ......+|++|++||||+++|++++........ |+ ....|..+..... ..++
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~----~~-~~i~c~~~~~~~~~~~lf 215 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRAKG----PF-IKVNCAALPESLLESELF 215 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCC----Ce-EEEECCCCCHHHHHHHhc
Confidence 356789988777666655544 444556999999999999999999886442211 11 1112222211000 0000
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
........+... .. ......+.+++|||||++.|+...|..|+.+|++. +.++.+|++|+..
T Consensus 216 g~~~~~~~~~~~-----~~-~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l 289 (457)
T PRK11361 216 GHEKGAFTGAQT-----LR-QGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDL 289 (457)
T ss_pred CCCCCCCCCCCC-----CC-CCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCH
Confidence 000000000000 00 00011245689999999999999999999999862 2457899988743
Q ss_pred ------CcchHHHHccceEE--EecCCCh--hHHHHH----HHHHHHHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQKF--FFPKMKD--ADIIYT----LQWIASKEG---IEIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qvI--~F~~p~~--~EI~ei----L~~iakkeG---l~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.+..|+..+ .++++.. +++..+ +.......+ ..+++++++.|..+ |+||+|++.+.|
T Consensus 290 ~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~~ 369 (457)
T PRK11361 290 QAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGNIRELSNVI 369 (457)
T ss_pred HHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCcHHHHHHHH
Confidence 24666788887754 4444442 344433 333333333 35899999999999 999999999999
Q ss_pred HHHHHh--CCCCCHHHHHHHH
Q 036794 627 EQLSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 627 EkLsLl--g~~IT~EdV~elV 645 (1152)
++++.. +..|+.+++...+
T Consensus 370 ~~~~~~~~~~~i~~~~l~~~~ 390 (457)
T PRK11361 370 ERAVVMNSGPIIFSEDLPPQI 390 (457)
T ss_pred HHHHHhCCCCcccHHHChHhh
Confidence 998766 3458888876433
|
|
| >KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.27 E-value=1.3e-11 Score=135.76 Aligned_cols=172 Identities=18% Similarity=0.220 Sum_probs=119.0
Q ss_pred CcCcccCcHHHHHHHHHHHHh---------C-CC-CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR---------R-KV-GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~---------g-ri-~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|+|+.|-+.++++|++++.- | +. -.++||||||||||+.+|+++|.+.+..
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnST----------------- 193 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANST----------------- 193 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCc-----------------
Confidence 579999999999999998632 2 22 2589999999999999999999998743
Q ss_pred cCCCccceEEeCCCCC----CC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPVGN----FD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~----~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEe 550 (1152)
++.+..... .+ -.-+..+++-+ ......||||||||.|... .-..||--|+.
T Consensus 194 -------FFSvSSSDLvSKWmGESEkLVknLFemA----Re~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG 262 (439)
T KOG0739|consen 194 -------FFSVSSSDLVSKWMGESEKLVKNLFEMA----RENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG 262 (439)
T ss_pred -------eEEeehHHHHHHHhccHHHHHHHHHHHH----HhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc
Confidence 222211100 11 12244444443 3356689999999988321 12345555554
Q ss_pred ---CCCCEEEEEEcCCCCcchHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 551 ---APRRVVFILVSSSLDALPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 551 ---pp~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
....+.++.+||-|-.|+.+|++|+.. |.++.|........++-.+..-...+++..+..|+..++|-
T Consensus 263 VG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 263 VGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGY 334 (439)
T ss_pred cccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCC
Confidence 345778888889999999999999994 77777766665555554444444468888999999997773
|
|
| >PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.7e-10 Score=124.52 Aligned_cols=190 Identities=22% Similarity=0.297 Sum_probs=137.9
Q ss_pred hhCCCCcCcccCcHHHHHHHHHH---HHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNA---VMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~a---L~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
...|..+++|+|-+..++.|.+. ...|..++.+||+|++|||||++++++..++....
T Consensus 20 ~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G------------------- 80 (249)
T PF05673_consen 20 HPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG------------------- 80 (249)
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC-------------------
Confidence 34566799999988888777644 44588888999999999999999999998876442
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-HHHHHHHHHHhh----CCCCEEEEEEcCCCC
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-DSWSAISKVVDR----APRRVVFILVSSSLD 565 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-eaqnaLLklLEe----pp~~VifILaTN~~d 565 (1152)
.-++++... ++..+.++++.+...| .+-|||+|+...=.. .....|..+||. .|.+|+|.+++|.-+
T Consensus 81 --LRlIev~k~---~L~~l~~l~~~l~~~~---~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRH 152 (249)
T PF05673_consen 81 --LRLIEVSKE---DLGDLPELLDLLRDRP---YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRH 152 (249)
T ss_pred --ceEEEECHH---HhccHHHHHHHHhcCC---CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEEecchhh
Confidence 226676543 3445556666665444 346899998654333 344566666654 788999999988543
Q ss_pred cchH-----------------------HHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCH-----HHHHHHHHhcC
Q 036794 566 ALPH-----------------------IIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDK-----DALKLIASRSD 616 (1152)
Q Consensus 566 kL~~-----------------------aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~-----dALelLAe~s~ 616 (1152)
.+++ +|..|+- .+.|.+++.++..+++...+++.|+.+++ +|+++-..+.+
T Consensus 153 Lv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~ 232 (249)
T PF05673_consen 153 LVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGG 232 (249)
T ss_pred ccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCC
Confidence 2222 2555665 69999999999999999999999999995 45555555556
Q ss_pred CCHHHHHHHHHHHH
Q 036794 617 GSLRDAEMTLEQLS 630 (1152)
Q Consensus 617 GDLR~Ain~LEkLs 630 (1152)
.+.|.|.+.++.+.
T Consensus 233 RSGRtA~QF~~~l~ 246 (249)
T PF05673_consen 233 RSGRTARQFIDDLA 246 (249)
T ss_pred CCHHHHHHHHHHHh
Confidence 68999888877653
|
|
| >PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=99.26 E-value=4.3e-11 Score=120.32 Aligned_cols=124 Identities=28% Similarity=0.430 Sum_probs=103.2
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch------hH
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR------HR 709 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~------~~ 709 (1152)
||.++|.+++|.+..+.++++++++..+|..+++..+++++..|.||..++..|..++|+++..+....... ..
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 789999999999999999999999999999999999999999999999999999999999999776542111 01
Q ss_pred HHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCCC
Q 036794 710 RKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAPD 760 (1152)
Q Consensus 710 ~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~~ 760 (1152)
...+. .....++.+.|.++++.|.+++.++|++.+|+++||++++++|..
T Consensus 81 ~~~~~-~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~ 130 (143)
T PF12169_consen 81 EEKLK-ELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQL 130 (143)
T ss_dssp HHHHH-HHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHH
Confidence 11121 124579999999999999999999999999999999999999964
|
It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G. |
| >TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.9e-11 Score=147.21 Aligned_cols=179 Identities=17% Similarity=0.188 Sum_probs=124.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|++|+|.+.+++.|.+.+... ..+.++|||||||||||++|+++|++++...... .|.
T Consensus 175 ~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i--------~~~ 246 (733)
T TIGR01243 175 VTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISI--------NGP 246 (733)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEE--------ecH
Confidence 47999999999999998877431 3446899999999999999999999886432110 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhC--C
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDRA--P 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEep--p 552 (1152)
.+. ..........++.+++.+.. ....||||||+|.+.. ..++.|+.+|+.. .
T Consensus 247 ~i~----------~~~~g~~~~~l~~lf~~a~~----~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~ 312 (733)
T TIGR01243 247 EIM----------SKYYGESEERLREIFKEAEE----NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGR 312 (733)
T ss_pred HHh----------cccccHHHHHHHHHHHHHHh----cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccC
Confidence 000 00001123456777776543 2347999999998742 3566788888763 3
Q ss_pred CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCHH
Q 036794 553 RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIASRSDGSLR 620 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id-~dALelLAe~s~GDLR 620 (1152)
..+++|++||.++.+++++++ |+. .+.|+.|+..+..++|+.... ++.+. +..++.++..+.|-..
T Consensus 313 ~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~--~~~l~~d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 313 GRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTR--NMPLAEDVDLDKLAEVTHGFVG 382 (733)
T ss_pred CCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhc--CCCCccccCHHHHHHhCCCCCH
Confidence 467888899999999999887 554 588999999999999986554 34443 3347778888777433
|
This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus. |
| >TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX) | Back alignment and domain information |
|---|
Probab=99.25 E-value=1e-10 Score=137.12 Aligned_cols=190 Identities=24% Similarity=0.301 Sum_probs=119.9
Q ss_pred cccCcHHHHHHHHHHHHh----------CC-------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 422 DLVGQNLVAQALSNAVMR----------RK-------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~----------gr-------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.++||++++..|..++.. .. ....+||+||+|+|||++|+++|+.++..+... .|
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~--------da 149 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIA--------DA 149 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEe--------ch
Confidence 378999999999877721 11 124699999999999999999999886432110 11
Q ss_pred ccccCCCccceEEeCCCCCCCHH--H-HHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHH
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFE--S-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKV 547 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vd--e-IreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLkl 547 (1152)
..+ ...+..+.+ . +..++......-..+.+.||||||+|.++. +.|++||++
T Consensus 150 ~~L-----------~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~i 218 (413)
T TIGR00382 150 TTL-----------TEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKI 218 (413)
T ss_pred hhc-----------cccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHH
Confidence 111 111222221 1 222222211111124567999999999976 589999999
Q ss_pred HhhC-------------CCCEEEEEEcCC----------------------------C---------C------------
Q 036794 548 VDRA-------------PRRVVFILVSSS----------------------------L---------D------------ 565 (1152)
Q Consensus 548 LEep-------------p~~VifILaTN~----------------------------~---------d------------ 565 (1152)
|+.. -.++++|+++|- . +
T Consensus 219 LeG~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~ 298 (413)
T TIGR00382 219 IEGTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVK 298 (413)
T ss_pred hhccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHH
Confidence 9641 124455555442 0 0
Q ss_pred -cchHHHHccce-EEEecCCChhHHHHHHHH----HHH-------HcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHH
Q 036794 566 -ALPHIIISRCQ-KFFFPKMKDADIIYTLQW----IAS-------KEGI--EIDKDALKLIASRS---DGSLRDAEMTLE 627 (1152)
Q Consensus 566 -kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~----iak-------keGl--~Id~dALelLAe~s---~GDLR~Ain~LE 627 (1152)
-+.|.++.|+. ++.|.+++.+++..++.. +.+ ..|+ .++++|+++|++.. .-..|.+...++
T Consensus 299 ~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie 378 (413)
T TIGR00382 299 FGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVE 378 (413)
T ss_pred HhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHH
Confidence 04567888886 578999999999888765 222 1244 57999999999982 235677777777
Q ss_pred HHH
Q 036794 628 QLS 630 (1152)
Q Consensus 628 kLs 630 (1152)
+..
T Consensus 379 ~~l 381 (413)
T TIGR00382 379 GLL 381 (413)
T ss_pred Hhh
Confidence 753
|
A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction. |
| >CHL00095 clpC Clp protease ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.25 E-value=7.3e-11 Score=149.56 Aligned_cols=202 Identities=18% Similarity=0.176 Sum_probs=145.1
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.|+++-+...|+.++|++..++.+..++......+ +||+||||||||++|+.+|..+.....+..
T Consensus 168 ~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n-~lL~G~pGvGKTal~~~la~~i~~~~vp~~-------------- 232 (821)
T CHL00095 168 NLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIVNRDVPDI-------------- 232 (821)
T ss_pred HHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCC-eEEECCCCCCHHHHHHHHHHHHHhCCCChh--------------
Confidence 45555667789999999999999999998766554 689999999999999999998754322110
Q ss_pred CCccceEEeCCC------CCCC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhCCC
Q 036794 490 GKSRNIKEVGPV------GNFD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRAPR 553 (1152)
Q Consensus 490 g~~~dviEIdaa------s~~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEepp~ 553 (1152)
-....+++++.. .+.+ .+.+..+++.+.. ....|+||||+|.+.. ++.+.|..+|.. .
T Consensus 233 l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~r--g 306 (821)
T CHL00095 233 LEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALAR--G 306 (821)
T ss_pred hcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhC--C
Confidence 001123333321 1112 2356777777643 2347999999998743 245666667765 6
Q ss_pred CEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCCC------
Q 036794 554 RVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS----KEGIEIDKDALKLIASRSDGS------ 618 (1152)
Q Consensus 554 ~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak----keGl~Id~dALelLAe~s~GD------ 618 (1152)
.+.+|++|+..+ ...+.+.+||+.|.+..++..+...+++.+.. ..++.++++++..++..+.+-
T Consensus 307 ~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~l 386 (821)
T CHL00095 307 ELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFL 386 (821)
T ss_pred CcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccC
Confidence 788999998543 35678999999999999999988887776543 356779999999999887652
Q ss_pred HHHHHHHHHHHHHh
Q 036794 619 LRDAEMTLEQLSLL 632 (1152)
Q Consensus 619 LR~Ain~LEkLsLl 632 (1152)
+..++..|+.++..
T Consensus 387 Pdkaidlld~a~a~ 400 (821)
T CHL00095 387 PDKAIDLLDEAGSR 400 (821)
T ss_pred chHHHHHHHHHHHH
Confidence 56799999987543
|
|
| >COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription] | Back alignment and domain information |
|---|
Probab=99.23 E-value=4.5e-11 Score=143.07 Aligned_cols=207 Identities=16% Similarity=0.142 Sum_probs=131.6
Q ss_pred CcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEeCCCC
Q 036794 425 GQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEVGPVG 502 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEIdaas 502 (1152)
+....++++...+.+ ....-.+|++|++||||..+|++|++... ...+ + ..-+|..+..... ..+|...+..
T Consensus 317 ~~d~s~a~l~rk~~rv~~~~~pvll~GEtGtGKe~laraiH~~s~-~~gp----f-vAvNCaAip~~liesELFGy~~Ga 390 (606)
T COG3284 317 LLDPSRATLLRKAERVAATDLPVLLQGETGTGKEVLARAIHQNSE-AAGP----F-VAVNCAAIPEALIESELFGYVAGA 390 (606)
T ss_pred ccCHHHHHHHHHHHHHhhcCCCeEecCCcchhHHHHHHHHHhccc-ccCC----e-EEEEeccchHHhhhHHHhccCccc
Confidence 444444444433322 33334589999999999999999998755 2211 1 1223333321110 1111111111
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----------CCCCEEEEEEcCCC-------C
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR----------APRRVVFILVSSSL-------D 565 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe----------pp~~VifILaTN~~-------d 565 (1152)
.++. ..+........+..+.+|+|||+.|+.+.|..||++|++ .+.++.+|.+|+.. .
T Consensus 391 fTga-----~~kG~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g 465 (606)
T COG3284 391 FTGA-----RRKGYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQG 465 (606)
T ss_pred cccc-----hhccccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcC
Confidence 1110 011112223346788999999999999999999999998 34578889998753 3
Q ss_pred cchHHHHccceEEEecCCChhHHH---HHHHHHHHHc---CCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh--CCCC
Q 036794 566 ALPHIIISRCQKFFFPKMKDADII---YTLQWIASKE---GIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL--GQRI 636 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~---eiL~~iakke---Gl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl--g~~I 636 (1152)
.+.+.|+.|+..+.+..|+..+.. ..|.++..++ .+.++++++..|..+ |+||+|++.|.|+.++++ ++.|
T Consensus 466 ~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~~g~~ 545 (606)
T COG3284 466 RFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALSDGGRI 545 (606)
T ss_pred CchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCCCCee
Confidence 578889999997666555554433 3444444443 578999999988887 999999999999999877 4456
Q ss_pred CHHHHH
Q 036794 637 SVPLVQ 642 (1152)
Q Consensus 637 T~EdV~ 642 (1152)
...|+.
T Consensus 546 ~~~dlp 551 (606)
T COG3284 546 RVSDLP 551 (606)
T ss_pred EcccCC
Confidence 555443
|
|
| >TIGR01818 ntrC nitrogen regulation protein NR(I) | Back alignment and domain information |
|---|
Probab=99.22 E-value=3.4e-10 Score=134.00 Aligned_cols=215 Identities=14% Similarity=0.160 Sum_probs=136.9
Q ss_pred cCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ceEE
Q 036794 420 FRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NIKE 497 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dviE 497 (1152)
+..++|....+..+...+.. ......+++.|++||||+++|++++........ |+ +..+|..+...... .++.
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~----~~-~~~~c~~~~~~~~~~~lfg 207 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRANG----PF-IALNMAAIPKDLIESELFG 207 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCC----Ce-EEEeCCCCCHHHHHHHhcC
Confidence 45688988777766655543 333456899999999999999999886543211 11 12223222110000 0000
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEEcCCC--
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILVSSSL-- 564 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILaTN~~-- 564 (1152)
-......+.. . ........+.+++|||||++.|+...|..|+++|++.. .++.+|++|+..
T Consensus 208 ~~~~~~~~~~--~----~~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~ 281 (463)
T TIGR01818 208 HEKGAFTGAN--T----RRQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLE 281 (463)
T ss_pred CCCCCCCCcc--c----CCCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHH
Confidence 0000000000 0 00000112456899999999999999999999998631 367888888743
Q ss_pred -----CcchHHHHccce--EEEecCCC--hhHHHHHHHHHH----HHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 565 -----DALPHIIISRCQ--KFFFPKMK--DADIIYTLQWIA----SKEG---IEIDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 565 -----dkL~~aL~SR~q--vI~F~~p~--~~EI~eiL~~ia----kkeG---l~Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
..+.+.|..|+. .|.++++. .+++..++..++ ...+ ..+++++++.|..+ |+||+|++.|.++
T Consensus 282 ~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~ 361 (463)
T TIGR01818 282 ALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVRQLENLCR 361 (463)
T ss_pred HHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHH
Confidence 246667888877 46666666 456666555443 3334 46899999999999 9999999999999
Q ss_pred HHHHhC--CCCCHHHHHHHH
Q 036794 628 QLSLLG--QRISVPLVQELV 645 (1152)
Q Consensus 628 kLsLlg--~~IT~EdV~elV 645 (1152)
+++... ..|+.+++...+
T Consensus 362 ~~~~~~~~~~i~~~~l~~~~ 381 (463)
T TIGR01818 362 WLTVMASGDEVLVSDLPAEL 381 (463)
T ss_pred HHHHhCCCCcccHHhchHHH
Confidence 988763 458888876544
|
This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc. |
| >KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.21 E-value=8.9e-11 Score=136.74 Aligned_cols=177 Identities=16% Similarity=0.176 Sum_probs=128.6
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
..-++..|+|+.|.+.+.+.+.+++.-. .....+||.||||||||.++++||.+.+..+
T Consensus 145 ~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atf---------- 214 (428)
T KOG0740|consen 145 DTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATF---------- 214 (428)
T ss_pred ccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceE----------
Confidence 3445567899999999999988776431 2234799999999999999999999977542
Q ss_pred CccccccCCCccceEEeCCCC----CCC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------H-HHH
Q 036794 482 NSCISHDRGKSRNIKEVGPVG----NFD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------S-WSA 543 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas----~~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------a-qna 543 (1152)
+.+.+.+ ..| ..-++.++.-+.. ..+.|+||||+|.+... . .+.
T Consensus 215 --------------f~iSassLtsK~~Ge~eK~vralf~vAr~----~qPsvifidEidslls~Rs~~e~e~srr~ktef 276 (428)
T KOG0740|consen 215 --------------FNISASSLTSKYVGESEKLVRALFKVARS----LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEF 276 (428)
T ss_pred --------------eeccHHHhhhhccChHHHHHHHHHHHHHh----cCCeEEEechhHHHHhhcCCcccccchhhhhHH
Confidence 2222111 111 2234555544432 45589999999987321 1 123
Q ss_pred HHHHHh---hCCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 544 ISKVVD---RAPRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 544 LLklLE---epp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
|++.+- .+..++++|.|||.|..++++++.|++ ++.++.|+.+....++...+.+.+..+.+..+..|++.++|
T Consensus 277 Liq~~~~~s~~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Teg 354 (428)
T KOG0740|consen 277 LLQFDGKNSAPDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEG 354 (428)
T ss_pred HhhhccccCCCCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 333322 155689999999999999999999998 47789999999999999999988888899999999999665
|
|
| >PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.6e-10 Score=132.95 Aligned_cols=107 Identities=20% Similarity=0.293 Sum_probs=82.6
Q ss_pred CceEEEEeCCCCCC------------HHHHHHHHHHHhhC----------CCCEEEEEEcC----CCCcchHHHHccceE
Q 036794 524 QYRIFVFDDCDTLS------------PDSWSAISKVVDRA----------PRRVVFILVSS----SLDALPHIIISRCQK 577 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls------------~eaqnaLLklLEep----------p~~VifILaTN----~~dkL~~aL~SR~qv 577 (1152)
..+||||||||++. ..+|..||+++|.. ..++.||++.. .+..|.|.|.-|+.+
T Consensus 249 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 249 QNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPI 328 (443)
T ss_pred cCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccce
Confidence 56899999999984 23788999999972 35677777753 455678889999985
Q ss_pred -EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 036794 578 -FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASRS--------DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 578 -I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~s--------~GDLR~Ain~LEkLs 630 (1152)
+.+.+++.+++..+|.. .+..+|+ .++++|++.||+.+ +-..|.+..+++++.
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L 403 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLL 403 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 88999999999888732 2334566 47999999999883 336788888888864
|
|
| >PRK14700 recombination factor protein RarA; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=3.3e-10 Score=126.72 Aligned_cols=139 Identities=17% Similarity=0.252 Sum_probs=116.9
Q ss_pred CCEEEEEEcCCCC--cchHHHHccceEEEecCCChhHHHHHHHHHHHHc------CCCCCHHHHHHHHHhcCCCHHHHHH
Q 036794 553 RRVVFILVSSSLD--ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKE------GIEIDKDALKLIASRSDGSLRDAEM 624 (1152)
Q Consensus 553 ~~VifILaTN~~d--kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakke------Gl~Id~dALelLAe~s~GDLR~Ain 624 (1152)
..++||.+|++.. .+.++|+|||++|.|.+++.+++...|++.+..+ .+.+++++++.|+..++||.|.++|
T Consensus 7 G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~aLN 86 (300)
T PRK14700 7 GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKILN 86 (300)
T ss_pred CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHHHH
Confidence 6788999987543 6889999999999999999999999999988752 3679999999999999999999999
Q ss_pred HHHHHHHh--C-C--CCCHHHHHHHHhcc----------chhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHH
Q 036794 625 TLEQLSLL--G-Q--RISVPLVQELVGLI----------SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQL 689 (1152)
Q Consensus 625 ~LEkLsLl--g-~--~IT~EdV~elVg~v----------~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~L 689 (1152)
.||.++.. . + .||.+.|++++... .-+.+..+++.+-..|++.|+.+|-+|+..|+||..|...|
T Consensus 87 ~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRL 166 (300)
T PRK14700 87 LLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRM 166 (300)
T ss_pred HHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHH
Confidence 99996642 1 1 29999999988532 23456667777778899999999999999999999988766
Q ss_pred HH
Q 036794 690 AT 691 (1152)
Q Consensus 690 a~ 691 (1152)
..
T Consensus 167 ii 168 (300)
T PRK14700 167 LC 168 (300)
T ss_pred HH
Confidence 54
|
|
| >KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.4e-10 Score=122.21 Aligned_cols=122 Identities=20% Similarity=0.311 Sum_probs=102.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------------CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------------LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------------~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
++|+||||+|+|.-+.|..|.+.||+.-.. ++|++||. |+-+|-.|+.|..+|...|++.+++.++|
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~d~~P-iiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~~d~~~IL 367 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALENDMAP-IIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTEEDIKKIL 367 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhhccCc-EEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcHHHHHHHH
Confidence 579999999999999999999999984333 55666652 55689999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHh-cCCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 593 QWIASKEGIEIDKDALKLIASR-SDGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~-s~GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+.+|+++.+.++++|+++|... ...++|.+++++....+. +..+..+||..+...
T Consensus 368 ~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~~~v~~~di~r~y~L 428 (454)
T KOG2680|consen 368 RIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKGKVVEVDDIERVYRL 428 (454)
T ss_pred HhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcCceeehhHHHHHHHH
Confidence 9999999999999999999988 456899999999876554 345777888776544
|
|
| >PRK10365 transcriptional regulatory protein ZraR; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.9e-09 Score=126.70 Aligned_cols=203 Identities=16% Similarity=0.173 Sum_probs=130.8
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
..++|....+..+...+.. ......++|+|++||||+++|++++........ |+ ....|..+.
T Consensus 139 ~~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~----~~-i~~~c~~~~----------- 202 (441)
T PRK10365 139 FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARSEK----PL-VTLNCAALN----------- 202 (441)
T ss_pred cceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCC----Ce-eeeeCCCCC-----------
Confidence 3578877766666554433 344567899999999999999999876543221 11 111122111
Q ss_pred CCCCCCHHHHHHHHHH-H-----------hhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEE
Q 036794 500 PVGNFDFESILDLLDN-M-----------VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVV 556 (1152)
Q Consensus 500 aas~~~vdeIreLle~-a-----------~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~Vi 556 (1152)
...+...+.. . ......+.+++|||||++.|+...|..|+++|++.. .+++
T Consensus 203 ------~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~r 276 (441)
T PRK10365 203 ------ESLLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVR 276 (441)
T ss_pred ------HHHHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceE
Confidence 0111110000 0 000122457899999999999999999999998732 3677
Q ss_pred EEEEcCCC-------CcchHHHHccceEEE--ecCCCh--hHHHHHHHHHHH----HcC---CCCCHHHHHHHHHh-cCC
Q 036794 557 FILVSSSL-------DALPHIIISRCQKFF--FPKMKD--ADIIYTLQWIAS----KEG---IEIDKDALKLIASR-SDG 617 (1152)
Q Consensus 557 fILaTN~~-------dkL~~aL~SR~qvI~--F~~p~~--~EI~eiL~~iak----keG---l~Id~dALelLAe~-s~G 617 (1152)
+|++|+.. ..+.+.|..++..+. ++++.. +++..++..++. ..+ ..+++++++.|..+ |+|
T Consensus 277 ii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpg 356 (441)
T PRK10365 277 LIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPG 356 (441)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 88888653 236667778877544 444432 244444444433 233 35899999999999 899
Q ss_pred CHHHHHHHHHHHHHh--CCCCCHHHHHHHH
Q 036794 618 SLRDAEMTLEQLSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 618 DLR~Ain~LEkLsLl--g~~IT~EdV~elV 645 (1152)
|+|++.|.|++++.. +..|+.+++...+
T Consensus 357 N~reL~~~~~~~~~~~~~~~i~~~~l~~~~ 386 (441)
T PRK10365 357 NIRELENAVERAVVLLTGEYISERELPLAI 386 (441)
T ss_pred HHHHHHHHHHHHHHhCCCCccchHhCchhh
Confidence 999999999998765 4468888876544
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.1e-09 Score=131.17 Aligned_cols=177 Identities=19% Similarity=0.273 Sum_probs=128.0
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
-.++|+-|-.++++.|.+.|.-. +...++|||||||||||.+|-++|...+-.+....
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvK---------- 733 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVK---------- 733 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEec----------
Confidence 35899999999999998887642 33358999999999999999999987654321110
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh--CC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR--AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe--pp 552 (1152)
|-..--.++ .-.-+.+|++++.+.. +++.|+|+||+|.+.+ ...|.||.-|+. .-
T Consensus 734 ----GPElL~KyI----GaSEq~vR~lF~rA~~----a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl 801 (952)
T KOG0735|consen 734 ----GPELLSKYI----GASEQNVRDLFERAQS----AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGL 801 (952)
T ss_pred ----CHHHHHHHh----cccHHHHHHHHHHhhc----cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccccc
Confidence 000000011 1234668999988743 5669999999999843 367889888876 33
Q ss_pred CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
..|+++.+|..|+.++++|++.+. .+.++.|++.+..++++.+....-+. ++-.++.+|..++|
T Consensus 802 ~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g 868 (952)
T KOG0735|consen 802 DGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDG 868 (952)
T ss_pred ceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCC
Confidence 578888889999999999998655 38889999999999998877654321 33347888888766
|
|
| >TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit | Back alignment and domain information |
|---|
Probab=99.14 E-value=4.5e-10 Score=130.88 Aligned_cols=108 Identities=20% Similarity=0.271 Sum_probs=83.4
Q ss_pred CCceEEEEeCCCCCCH------------HHHHHHHHHHhh----------CCCCEEEEEEcC----CCCcchHHHHccce
Q 036794 523 SQYRIFVFDDCDTLSP------------DSWSAISKVVDR----------APRRVVFILVSS----SLDALPHIIISRCQ 576 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~------------eaqnaLLklLEe----------pp~~VifILaTN----~~dkL~~aL~SR~q 576 (1152)
...+||||||+|++.. .+|..||+++|. ...++.||++.. .+..|.|.|.-|+.
T Consensus 246 e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~P 325 (441)
T TIGR00390 246 EQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFP 325 (441)
T ss_pred HcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccc
Confidence 4678999999999842 368999999997 235777887763 45568888999998
Q ss_pred E-EEecCCChhHHHHHHH-----------HHHHHcCC--CCCHHHHHHHHHhc--------CCCHHHHHHHHHHHH
Q 036794 577 K-FFFPKMKDADIIYTLQ-----------WIASKEGI--EIDKDALKLIASRS--------DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 577 v-I~F~~p~~~EI~eiL~-----------~iakkeGl--~Id~dALelLAe~s--------~GDLR~Ain~LEkLs 630 (1152)
+ +.+.+++.+++..+|. ..+..+|+ .++++|+..||..+ +-..|.+..+++++.
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l 401 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLL 401 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 5 8999999999988772 22344565 47999999999884 346888888888863
|
This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment. |
| >KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=8.6e-10 Score=138.45 Aligned_cols=188 Identities=23% Similarity=0.200 Sum_probs=137.3
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..|+++-|-+.++..|++.+.. -..+..+||+||||||||+.|+++|.++...... .
T Consensus 262 v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~k-----------i 330 (1080)
T KOG0732|consen 262 VGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRK-----------I 330 (1080)
T ss_pred cCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccc-----------c
Confidence 4799999999999999987754 1334579999999999999999999876433211 1
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHhhC--C
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVDRA--P 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLEep--p 552 (1152)
.+++....+..... ..-.-.+++.+++.+... .+.|||+||||.|.+. ....||.+|+.. .
T Consensus 331 sffmrkgaD~lskw--vgEaERqlrllFeeA~k~----qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR 404 (1080)
T KOG0732|consen 331 SFFMRKGADCLSKW--VGEAERQLRLLFEEAQKT----QPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR 404 (1080)
T ss_pred chhhhcCchhhccc--cCcHHHHHHHHHHHHhcc----CceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC
Confidence 12222211111110 011235688888887543 4579999999987532 345788888873 3
Q ss_pred CCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
..|++|.+||.++.+.++|+++.. .+.|+.++.+....+|...-.+..-.+....+..|++.+.|....-
T Consensus 405 gqVvvigATnRpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaD 477 (1080)
T KOG0732|consen 405 GQVVVIGATNRPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGAD 477 (1080)
T ss_pred CceEEEcccCCccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHH
Confidence 689999999999999999988765 4889999999999998877777677789999999999976644443
|
|
| >PRK13531 regulatory ATPase RavA; Provisional | Back alignment and domain information |
|---|
Probab=99.13 E-value=3e-09 Score=126.16 Aligned_cols=205 Identities=16% Similarity=0.151 Sum_probs=120.9
Q ss_pred CcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 421 RDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
..|+|++++++.+..++..+. .+||+||||||||++|++|++.+.... .+ .+ ..|... ...++
T Consensus 20 ~~i~gre~vI~lll~aalag~---hVLL~GpPGTGKT~LAraLa~~~~~~~-~F----~~-~~~~ft---tp~DL----- 82 (498)
T PRK13531 20 KGLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNAR-AF----EY-LMTRFS---TPEEV----- 82 (498)
T ss_pred hhccCcHHHHHHHHHHHccCC---CEEEECCCChhHHHHHHHHHHHhcccC-cc----ee-eeeeec---CcHHh-----
Confidence 458999999999988886653 489999999999999999999875321 11 00 000000 00011
Q ss_pred CCCCCHHHHHHHH-----HHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---------CCCEEE-EEEcCCCC
Q 036794 501 VGNFDFESILDLL-----DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---------PRRVVF-ILVSSSLD 565 (1152)
Q Consensus 501 as~~~vdeIreLl-----e~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---------p~~Vif-ILaTN~~d 565 (1152)
++...+..+. ......+. ....++|+|||+.+++..+++|+.+|++. +.+..| +++||.+.
T Consensus 83 ---fG~l~i~~~~~~g~f~r~~~G~L-~~A~lLfLDEI~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP 158 (498)
T PRK13531 83 ---FGPLSIQALKDEGRYQRLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP 158 (498)
T ss_pred ---cCcHHHhhhhhcCchhhhcCCcc-ccccEEeecccccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc
Confidence 1111111111 11111111 12249999999999999999999999761 123344 44455332
Q ss_pred ---cchHHHHccceE-EEecCCCh-hHHHHHHHHHHH-----------------------HcCCCCCHHHHHHHHHhc--
Q 036794 566 ---ALPHIIISRCQK-FFFPKMKD-ADIIYTLQWIAS-----------------------KEGIEIDKDALKLIASRS-- 615 (1152)
Q Consensus 566 ---kL~~aL~SR~qv-I~F~~p~~-~EI~eiL~~iak-----------------------keGl~Id~dALelLAe~s-- 615 (1152)
.+.+++..|+.. +.+++++. ++..++|..... -..+.+++..+++|....
T Consensus 159 E~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~ 238 (498)
T PRK13531 159 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQ 238 (498)
T ss_pred ccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHH
Confidence 244589999963 77777863 444555543110 135567778777776652
Q ss_pred ----C----CCHHHHHHH---HHHHHHhCCC--CCHHHHHHHHhc
Q 036794 616 ----D----GSLRDAEMT---LEQLSLLGQR--ISVPLVQELVGL 647 (1152)
Q Consensus 616 ----~----GDLR~Ain~---LEkLsLlg~~--IT~EdV~elVg~ 647 (1152)
. -+.|..+.. ++..+++.++ ++.+||. ++..
T Consensus 239 lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~ 282 (498)
T PRK13531 239 LDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKD 282 (498)
T ss_pred HhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHH
Confidence 1 234554443 4444566543 8888888 5543
|
|
| >KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.09 E-value=3e-10 Score=142.53 Aligned_cols=211 Identities=21% Similarity=0.247 Sum_probs=148.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC------------CCC--c-EEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR------------KVG--L-LYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g------------ri~--~-~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
.+.|.++|+|....++.|+......+.+|+... ... . ++|++||||+|||+.|++++++++....
T Consensus 307 ~~~~~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~ 386 (871)
T KOG1968|consen 307 GAGWTEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVV 386 (871)
T ss_pred ccccccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhccccee
Confidence 578999999999999999887777888887664 111 1 3699999999999999999999987655
Q ss_pred CCCCCCCCCCccccccCCCccceE-EeCCCCCCCHHHHHHHHHHH-hhCCCCCCceEEEEeCCCCCCH---HHHHHHHHH
Q 036794 473 EQPKPCGFCNSCISHDRGKSRNIK-EVGPVGNFDFESILDLLDNM-VTSRPPSQYRIFVFDDCDTLSP---DSWSAISKV 547 (1152)
Q Consensus 473 e~~epcg~c~~c~~i~~g~~~dvi-EIdaas~~~vdeIreLle~a-~~~P~~a~~kVVIIDEID~Ls~---eaqnaLLkl 547 (1152)
+.+..... +.....- +.+..+. ..+...+... .........-||++||+|-+.. ..+..|-.+
T Consensus 387 E~Nas~~R---------Sk~~l~~~~~~~~~s---~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~dRg~v~~l~~l 454 (871)
T KOG1968|consen 387 EKNASDVR---------SKKELLNKLGNATSS---HSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGEDRGGVSKLSSL 454 (871)
T ss_pred ecCccccc---------cccHHHhhhhccccc---cchhhhhcccccccccccceeEEEEeccccccchhhhhHHHHHHH
Confidence 44311000 0000000 0000000 0111111000 0001113345999999999987 456777777
Q ss_pred HhhCCCCEEEEEEcCCCCc-chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 548 VDRAPRRVVFILVSSSLDA-LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 548 LEepp~~VifILaTN~~dk-L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
+.. ...-+|++||+.+. -..++.+-|-.++|..|+...+..+|..+|..+++.|+++.++.+...++||+|..++.|
T Consensus 455 ~~k--s~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~DiR~~i~~l 532 (871)
T KOG1968|consen 455 CKK--SSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGGDIRQIIMQL 532 (871)
T ss_pred HHh--ccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhcccCHHHHHHHH
Confidence 774 55668888887763 233566678889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 036794 627 EQLSLL 632 (1152)
Q Consensus 627 EkLsLl 632 (1152)
+.+.+.
T Consensus 533 q~~~~~ 538 (871)
T KOG1968|consen 533 QFWSLS 538 (871)
T ss_pred hhhhcc
Confidence 988544
|
|
| >PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2 | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.9e-09 Score=110.85 Aligned_cols=164 Identities=21% Similarity=0.292 Sum_probs=118.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~ 525 (1152)
|||||+.=.-+...++.|.+.+..... ...++..++.. .....++++.+...|+++..
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~~------------------~~~~~~~~~~~----~~~~~~l~~~~~s~slF~~~ 58 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKDF------------------DDFNVIVFDGS----EDDIDELLEELQSPSLFGDK 58 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTTE------------------EEEEEEE-STT----S-HHH-HTTTSTTTTSSSSE
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCCC------------------ccceEEEEccc----cCcHHHHHHHHhcCCccCCC
Confidence 899999888888888888777442210 01123333321 12233477788888999999
Q ss_pred eEEEEeCC----CCCCHHHHHHHHHHHhhCCCCEEEEEEcC-CCC---cchHHHHccceEEEecCCChhHHHHHHHHHHH
Q 036794 526 RIFVFDDC----DTLSPDSWSAISKVVDRAPRRVVFILVSS-SLD---ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 526 kVVIIDEI----D~Ls~eaqnaLLklLEepp~~VifILaTN-~~d---kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak 597 (1152)
++|+|.++ +.........|..+++.++.++++|+.++ ..+ ++...+...+.++.|.++...++..|++..++
T Consensus 59 klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i~~~~~ 138 (172)
T PF06144_consen 59 KLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWIKERAK 138 (172)
T ss_dssp EEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHHHHHHH
T ss_pred eEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHHHHHHH
Confidence 99999998 55677788999999999999999999888 554 46677778888999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 598 KEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 598 keGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
+.|+.++++|+++|+.+.++|++.+.++|+++++
T Consensus 139 ~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 139 KNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999875
|
7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F. |
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.1e-09 Score=103.79 Aligned_cols=136 Identities=22% Similarity=0.270 Sum_probs=88.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC
Q 036794 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN 503 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~ 503 (1152)
+|++.++..+...+... ....++|+||+|+|||++++.+++.+..... .++.++....
T Consensus 1 ~~~~~~~~~i~~~~~~~-~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~---------------------~v~~~~~~~~ 58 (151)
T cd00009 1 VGQEEAIEALREALELP-PPKNLLLYGPPGTGKTTLARAIANELFRPGA---------------------PFLYLNASDL 58 (151)
T ss_pred CchHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHhhcCCC---------------------CeEEEehhhh
Confidence 36777888888887653 3346899999999999999999998852110 0222221111
Q ss_pred CCHHHHHHHH-----HHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC------CCCEEEEEEcCCCC--cchHH
Q 036794 504 FDFESILDLL-----DNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA------PRRVVFILVSSSLD--ALPHI 570 (1152)
Q Consensus 504 ~~vdeIreLl-----e~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep------p~~VifILaTN~~d--kL~~a 570 (1152)
.......... .............+|||||++.+.......++..++.. ...+.+|++++... .+.+.
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~ 138 (151)
T cd00009 59 LEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRA 138 (151)
T ss_pred hhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChh
Confidence 1101111000 11111122345689999999999777778888888874 46888999988766 67888
Q ss_pred HHccc-eEEEec
Q 036794 571 IISRC-QKFFFP 581 (1152)
Q Consensus 571 L~SR~-qvI~F~ 581 (1152)
+.+|+ ..+.|+
T Consensus 139 ~~~r~~~~i~~~ 150 (151)
T cd00009 139 LYDRLDIRIVIP 150 (151)
T ss_pred HHhhhccEeecC
Confidence 99998 566654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.3e-10 Score=124.91 Aligned_cols=178 Identities=20% Similarity=0.217 Sum_probs=116.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
-+|+++-|--..+..|.+.+.- =+.|..+|||||||||||.+|+++|..+++.+....
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~---------- 198 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVV---------- 198 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEee----------
Confidence 4899999988888888776532 245668999999999999999999999987642110
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHHHHhh----
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISKVVDR---- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLklLEe---- 550 (1152)
++.. ++....-...-|++.+..+.. -...++|+||+|... ...+..|..++++
T Consensus 199 ---ss~l-----v~kyiGEsaRlIRemf~yA~~----~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgf 266 (388)
T KOG0651|consen 199 ---SSAL-----VDKYIGESARLIRDMFRYARE----VIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGF 266 (388)
T ss_pred ---Hhhh-----hhhhcccHHHHHHHHHHHHhh----hCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccc
Confidence 0100 011111122345555555433 234899999999862 2345677777665
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHccce---EEEecCCChhHHHHHHHHHHHHcC--CCCCHHHHHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEG--IEIDKDALKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeG--l~Id~dALelLAe~s~G 617 (1152)
.-..|-+|++||+++-|+++|++-.. .+..+.|.......+++-..+... -.|+.+++-.+.+-++|
T Consensus 267 d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Geid~eaivK~~d~f~g 339 (388)
T KOG0651|consen 267 DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGEIDDEAILKLVDGFNG 339 (388)
T ss_pred hhcccccEEEecCCccccchhhcCCccccceeccCCcchhhceeeEeeccccccccccccHHHHHHHHhccCh
Confidence 33689999999999999999988554 355565655554444443332211 14777777777777655
|
|
| >COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.1e-09 Score=111.42 Aligned_cols=190 Identities=21% Similarity=0.281 Sum_probs=139.4
Q ss_pred hhCCCCcCcccCcHHHHHHHHH---HHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSN---AVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~---aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
.+.|-.+.+|+|-+...+.|.. ....|..++.+||+|.+||||+++++++..++....
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~g------------------- 113 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEG------------------- 113 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcC-------------------
Confidence 4556678899998887777763 445688888999999999999999999999887542
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhh----CCCCEEEEEEcCCCC
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-SWSAISKVVDR----APRRVVFILVSSSLD 565 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-aqnaLLklLEe----pp~~VifILaTN~~d 565 (1152)
..++|++.. ++..+..+++.++..| .+-|||+|+.-.=..+ ...+|..+||. .|.+|+|..++|.-+
T Consensus 114 --lrLVEV~k~---dl~~Lp~l~~~Lr~~~---~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRH 185 (287)
T COG2607 114 --LRLVEVDKE---DLATLPDLVELLRARP---EKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSNRRH 185 (287)
T ss_pred --CeEEEEcHH---HHhhHHHHHHHHhcCC---ceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecCCcc
Confidence 237887653 4455666677766554 3468899987554433 45566666654 788999999988766
Q ss_pred cchHH----------------------HHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHH-----HHHhcCC
Q 036794 566 ALPHI----------------------IISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL-----IASRSDG 617 (1152)
Q Consensus 566 kL~~a----------------------L~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALel-----LAe~s~G 617 (1152)
.+++. |-.|+. .+.|++.+.++...++...+++.+++++++.++. -..+.+.
T Consensus 186 Ll~e~~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~R 265 (287)
T COG2607 186 LLPEDMKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGR 265 (287)
T ss_pred cccHhhhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCC
Confidence 44432 334544 5889999999999999999999999998755544 3334556
Q ss_pred CHHHHHHHHHHHH
Q 036794 618 SLRDAEMTLEQLS 630 (1152)
Q Consensus 618 DLR~Ain~LEkLs 630 (1152)
+-|-|.+.++.++
T Consensus 266 SGR~A~QF~~~~~ 278 (287)
T COG2607 266 SGRVAWQFIRDLA 278 (287)
T ss_pred ccHhHHHHHHHHH
Confidence 8888888877764
|
|
| >KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.00 E-value=1e-08 Score=123.26 Aligned_cols=214 Identities=18% Similarity=0.172 Sum_probs=147.4
Q ss_pred CcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 421 RDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
.++.|....+..+...+.. -+.+.++|+|||||||||.+++++|++.++.....+ +-.+
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~--------~pel- 254 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLIN--------GPEL- 254 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecc--------cHHH-
Confidence 5677777666666655533 245568999999999999999999999875421111 0000
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH----------HHHHHHHHHHhhCC--CCEE
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP----------DSWSAISKVVDRAP--RRVV 556 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~----------eaqnaLLklLEepp--~~Vi 556 (1152)
+ .....-.-..++..++.+.... .+.++||||+|.+.+ .....|+.+++... ..++
T Consensus 255 -------i--~k~~gEte~~LR~~f~~a~k~~---~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vi 322 (693)
T KOG0730|consen 255 -------I--SKFPGETESNLRKAFAEALKFQ---VPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVI 322 (693)
T ss_pred -------H--HhcccchHHHHHHHHHHHhccC---CCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEE
Confidence 0 0001122355788888775442 257999999999864 24558888888755 7999
Q ss_pred EEEEcCCCCcchHHHHc-cceE-EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH-HHHHHHHHHHHHhC
Q 036794 557 FILVSSSLDALPHIIIS-RCQK-FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSL-RDAEMTLEQLSLLG 633 (1152)
Q Consensus 557 fILaTN~~dkL~~aL~S-R~qv-I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDL-R~Ain~LEkLsLlg 633 (1152)
+|.+||.++.|.+++++ |+.. +.+.-|+..+..++|+.+++..+.. ++..+..++..+.|-+ .++..++..+++-.
T Consensus 323 vl~atnrp~sld~alRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~ 401 (693)
T KOG0730|consen 323 VLAATNRPDSLDPALRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQA 401 (693)
T ss_pred EEEecCCccccChhhhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHH
Confidence 99999999999999997 7764 8888999999999999999988776 6778888998887754 35555555544332
Q ss_pred CCCCHHHHHHHHhccchhhHHHH
Q 036794 634 QRISVPLVQELVGLISDEKLVDL 656 (1152)
Q Consensus 634 ~~IT~EdV~elVg~v~ee~ifdL 656 (1152)
.+=+.++++.+...+....+-+.
T Consensus 402 ~r~~~~~~~~A~~~i~psa~Re~ 424 (693)
T KOG0730|consen 402 TRRTLEIFQEALMGIRPSALREI 424 (693)
T ss_pred hhhhHHHHHHHHhcCCchhhhhe
Confidence 22255566666655444443333
|
|
| >KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-08 Score=119.00 Aligned_cols=194 Identities=18% Similarity=0.255 Sum_probs=132.6
Q ss_pred ccCcHHHHHHHHHHHH----hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 423 LVGQNLVAQALSNAVM----RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~----~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
|-+.+.....+...+. ....+.++.++|-||||||.+++.+-+.|.........| ...++++
T Consensus 398 LpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p--------------~f~yveI 463 (767)
T KOG1514|consen 398 LPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP--------------KFDYVEI 463 (767)
T ss_pred ccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC--------------CccEEEE
Confidence 4555655555554443 323344788999999999999999998876433222111 1124444
Q ss_pred CCCCCC------------------CHHHHHHHHHHHhhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhC---CCCEE
Q 036794 499 GPVGNF------------------DFESILDLLDNMVTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRA---PRRVV 556 (1152)
Q Consensus 499 daas~~------------------~vdeIreLle~a~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEep---p~~Vi 556 (1152)
++..-. .+..-.++++.-...|.. ....||+|||.|.|-..-|..|..+++.| ...++
T Consensus 464 Ngm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 464 NGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred cceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccHHHHHHHhcCCcCCCCceE
Confidence 433222 223323333332222222 34568999999999988899999999874 46888
Q ss_pred EEEEcCCCCcchHH-----HHccc--eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh---cCCCHHHHHHHH
Q 036794 557 FILVSSSLDALPHI-----IISRC--QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR---SDGSLRDAEMTL 626 (1152)
Q Consensus 557 fILaTN~~dkL~~a-----L~SR~--qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~---s~GDLR~Ain~L 626 (1152)
+|.++|..+ ||+. +-+|+ .++.|.+++-.++.+++...++.. -.++.+|+++++.. ..||.|.++.++
T Consensus 544 vi~IaNTmd-lPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-~~f~~~aielvarkVAavSGDaRraldic 621 (767)
T KOG1514|consen 544 VIAIANTMD-LPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-DAFENKAIELVARKVAAVSGDARRALDIC 621 (767)
T ss_pred EEEeccccc-CHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-hhcchhHHHHHHHHHHhccccHHHHHHHH
Confidence 899988877 5554 34454 479999999999999998777654 35789999999887 679999999999
Q ss_pred HHHHHh
Q 036794 627 EQLSLL 632 (1152)
Q Consensus 627 EkLsLl 632 (1152)
++++-.
T Consensus 622 ~RA~Ei 627 (767)
T KOG1514|consen 622 RRAAEI 627 (767)
T ss_pred HHHHHH
Confidence 998755
|
|
| >KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.1e-08 Score=116.81 Aligned_cols=211 Identities=20% Similarity=0.244 Sum_probs=143.5
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..+.-.+.| ..++|.+.-+..+++++.. .+.+..+.++|.||||||.+..-+-..+.+.... +|....+|.
T Consensus 141 ~~l~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~---~~~v~inc~ 214 (529)
T KOG2227|consen 141 ESLLNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKS---PVTVYINCT 214 (529)
T ss_pred HHHHhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhccc---ceeEEEeec
Confidence 344555666 5679999888888888765 3444567799999999999998877776655332 344445566
Q ss_pred cccCCCc------cce-EEeCCCCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---CCCC
Q 036794 486 SHDRGKS------RNI-KEVGPVGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---APRR 554 (1152)
Q Consensus 486 ~i~~g~~------~dv-iEIdaas~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---pp~~ 554 (1152)
.+..... ..+ .+... ...+ .+....++. .... ...-|+++||+|.|....+..|+.+++- |..+
T Consensus 215 sl~~~~aiF~kI~~~~~q~~~s-~~~~-~~~~~~~~~h~~q~---k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr 289 (529)
T KOG2227|consen 215 SLTEASAIFKKIFSSLLQDLVS-PGTG-MQHLEKFEKHTKQS---KFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSR 289 (529)
T ss_pred cccchHHHHHHHHHHHHHHhcC-Cchh-HHHHHHHHHHHhcc---cceEEEEechhhHHhhcccceeeeehhcccCCcce
Confidence 5432221 111 01111 1122 222223332 2222 1235889999999988877778777776 5678
Q ss_pred EEEEEEcCCCC---cchHHHHccce----EEEecCCChhHHHHHHHHHHHHcCCCC-CHHHHHHHHHh---cCCCHHHHH
Q 036794 555 VVFILVSSSLD---ALPHIIISRCQ----KFFFPKMKDADIIYTLQWIASKEGIEI-DKDALKLIASR---SDGSLRDAE 623 (1152)
Q Consensus 555 VifILaTN~~d---kL~~aL~SR~q----vI~F~~p~~~EI~eiL~~iakkeGl~I-d~dALelLAe~---s~GDLR~Ai 623 (1152)
.++|.++|..+ .+.+.|..++. .+.|+||+.++|.++|...+..+...+ -+.|++++|+. ..||+|.|+
T Consensus 290 ~iLiGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaL 369 (529)
T KOG2227|consen 290 IILIGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKAL 369 (529)
T ss_pred eeeeeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHH
Confidence 89999999876 45666777554 699999999999999999988776554 44588888887 569999999
Q ss_pred HHHHHHH
Q 036794 624 MTLEQLS 630 (1152)
Q Consensus 624 n~LEkLs 630 (1152)
..+..+.
T Consensus 370 dv~R~ai 376 (529)
T KOG2227|consen 370 DVCRRAI 376 (529)
T ss_pred HHHHHHH
Confidence 9988654
|
|
| >PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-09 Score=117.50 Aligned_cols=133 Identities=20% Similarity=0.276 Sum_probs=76.0
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC-C------C
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR-G------K 491 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~-g------~ 491 (1152)
.|.+|+||+.++..|.-+...+ |.+||+||||||||++|+.++..+...... +.+..... ..+.. . .
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG~---h~lLl~GppGtGKTmlA~~l~~lLP~l~~~--e~le~~~i-~s~~~~~~~~~~~~ 74 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAGG---HHLLLIGPPGTGKTMLARRLPSLLPPLTEE--EALEVSKI-YSVAGLGPDEGLIR 74 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHCC-----EEEES-CCCTHHHHHHHHHHCS--CCEE--CCESS--S--TT---S---EEEE
T ss_pred ChhhhcCcHHHHHHHHHHHcCC---CCeEEECCCCCCHHHHHHHHHHhCCCCchH--HHhhhccc-cccccCCCCCceec
Confidence 3899999999999999888753 679999999999999999998765432211 11110000 00000 0 0
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHh-hCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCC
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMV-TSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRR 554 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~-~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~ 554 (1152)
.+.+.... .... ...++.... ..| ..+.++|+||||+..+.....++|+..|++ .|.+
T Consensus 75 ~~Pfr~ph--hs~s---~~~liGgg~~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~Pa~ 149 (206)
T PF01078_consen 75 QRPFRAPH--HSAS---EAALIGGGRPPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTYPAR 149 (206)
T ss_dssp ---EEEE---TT-----HHHHHEEGGGEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEEB--
T ss_pred CCCcccCC--CCcC---HHHHhCCCcCCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEEecc
Confidence 11111111 1111 122222211 011 125689999999999999999999999997 4677
Q ss_pred EEEEEEcC
Q 036794 555 VVFILVSS 562 (1152)
Q Consensus 555 VifILaTN 562 (1152)
..||++.|
T Consensus 150 f~lv~a~N 157 (206)
T PF01078_consen 150 FLLVAAMN 157 (206)
T ss_dssp EEEEEEE-
T ss_pred cEEEEEec
Confidence 88888876
|
This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B. |
| >PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-08 Score=108.03 Aligned_cols=192 Identities=17% Similarity=0.274 Sum_probs=110.8
Q ss_pred ccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC------------
Q 036794 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG------------ 490 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g------------ 490 (1152)
++|.+..++.|.+++..+.. ..++++||+|+|||++++.+.+.+..... ...++..+......
T Consensus 1 F~gR~~el~~l~~~l~~~~~-~~~~l~G~rg~GKTsLl~~~~~~~~~~~~----~~~y~~~~~~~~~~~~~~~~~~~~~~ 75 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPS-QHILLYGPRGSGKTSLLKEFINELKEKGY----KVVYIDFLEESNESSLRSFIEETSLA 75 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--S-SEEEEEESTTSSHHHHHHHHHHHCT--EE----CCCHHCCTTBSHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcC-cEEEEEcCCcCCHHHHHHHHHHHhhhcCC----cEEEEecccchhhhHHHHHHHHHHHH
Confidence 57899999999999987643 46899999999999999999998743211 01111110000000
Q ss_pred -----------CccceEEeC-CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC------HHHHHHHHHHHhh--
Q 036794 491 -----------KSRNIKEVG-PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS------PDSWSAISKVVDR-- 550 (1152)
Q Consensus 491 -----------~~~dviEId-aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls------~eaqnaLLklLEe-- 550 (1152)
.......+. .........+..+++.+... +..-||+|||++.+. ......|..+++.
T Consensus 76 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~---~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 76 DELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKK---GKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp CHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHC---HCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhc---CCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 000000010 00112234455566655433 333799999999988 3445677777776
Q ss_pred CCCCEEEEEEcCCCCcc------hHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCC--CHHHHHHHHHhcCCCHHHH
Q 036794 551 APRRVVFILVSSSLDAL------PHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEI--DKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 551 pp~~VifILaTN~~dkL------~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~I--d~dALelLAe~s~GDLR~A 622 (1152)
...++.+|+++...... ..++..|+..+.+++++.++..+++...+... ..+ +++.++.+...++|+++.+
T Consensus 153 ~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~gG~P~~l 231 (234)
T PF01637_consen 153 SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSLTGGNPRYL 231 (234)
T ss_dssp --TTEEEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC-------HHHHHHHHHHHTT-HHHH
T ss_pred ccCCceEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHHhCCCHHHH
Confidence 34567777776653211 12366778889999999999999999988776 655 9999999999999999876
Q ss_pred H
Q 036794 623 E 623 (1152)
Q Consensus 623 i 623 (1152)
.
T Consensus 232 ~ 232 (234)
T PF01637_consen 232 Q 232 (234)
T ss_dssp H
T ss_pred h
Confidence 4
|
; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A. |
| >PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.8e-08 Score=116.09 Aligned_cols=238 Identities=13% Similarity=0.184 Sum_probs=137.0
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
++++++.+..++.+..++..++ .++|+||||||||++|+.+|..+........ + ..+.....-...+++.-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~~~---~iil~GppGtGKT~lA~~la~~l~~~~~~~~--v---~~VtFHpsySYeDFI~G~ 245 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTIKK---NIILQGPPGVGKTFVARRLAYLLTGEKAPQR--V---NMVQFHQSYSYEDFIQGY 245 (459)
T ss_pred hhcccCCHHHHHHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHhcCCcccce--e---eEEeecccccHHHHhccc
Confidence 6788888888888888887543 5899999999999999999998865321110 0 000000000111111100
Q ss_pred CCCCCCH----HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhh----------------------CC
Q 036794 500 PVGNFDF----ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-SWSAISKVVDR----------------------AP 552 (1152)
Q Consensus 500 aas~~~v----deIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-aqnaLLklLEe----------------------pp 552 (1152)
.....+. .-+.+++..+...| ..+.+|||||++....+ .+..|+.+||. .|
T Consensus 246 rP~~vgy~~~~G~f~~~~~~A~~~p--~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 246 RPNGVGFRRKDGIFYNFCQQAKEQP--EKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred CCCCCCeEecCchHHHHHHHHHhcc--cCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 0111111 12344555554433 34589999999999855 57777777762 45
Q ss_pred CCEEEEEEcCCCC----cchHHHHccceEEEecC-CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 553 RRVVFILVSSSLD----ALPHIIISRCQKFFFPK-MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 553 ~~VifILaTN~~d----kL~~aL~SR~qvI~F~~-p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
.++.||.+.|..+ .++.+|++|+..+.+.+ ++...+.+++. ..+ +++..++.+++. +..+.+.|.
T Consensus 324 ~Nl~IIgTMNt~Drs~~~lD~AlrRRF~fi~i~p~~~~~~~~~~l~----~~~--~~~~~~~~l~~~----l~~LN~~I~ 393 (459)
T PRK11331 324 ENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQFRNFLL----NKK--AEPSFVESLCQK----MNELNQEIS 393 (459)
T ss_pred CCeEEEEecCccccchhhccHHHHhhhheEEecCCCChHHHHHHHH----hcc--cCchhHHHHHHH----HHHHHHHHH
Confidence 7888999998776 58889999999988876 34444444442 122 344444444332 233333333
Q ss_pred HH-HHhCC--C-----CC------HHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036794 628 QL-SLLGQ--R-----IS------VPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIME 677 (1152)
Q Consensus 628 kL-sLlg~--~-----IT------~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~ 677 (1152)
+- .+++. . .. .....+.+..+-...+.-|++.-+-.|..++-.+.+.|+.
T Consensus 394 ~~~~~lg~~~~IGhsyf~~~~~~~~~~~~~~l~~i~~~~I~PlL~EY~~dd~~k~~~~~~~~~~ 457 (459)
T PRK11331 394 KEATILGKGFRIGHSYFCCGLEDGTSPDTQWLKEIVMTDIAPLLEEYFFDDPYKQQIWADKLLG 457 (459)
T ss_pred hhhhccCCCeEEeeeeeccccccccchhHHHHHHHHHhhhhhhHHHHcCCCHHHHHHHHHHhcc
Confidence 21 11211 0 00 0011133344445667777777777888887777776653
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.9e-09 Score=126.04 Aligned_cols=245 Identities=16% Similarity=0.214 Sum_probs=153.9
Q ss_pred cccccchhcccCCCC--CCCCCchhhhccccCCCCCC-CCCCCCccccCCCCCCCCCCCCCCccccccCC---cccccCc
Q 036794 290 HHRGKTFLDMAGRSL--TSCGLSDSRIRKAGGASHSR-NVPDMPLVSDRSSSSTNSGAEALPLLVEASGS---QSTEHAG 363 (1152)
Q Consensus 290 ~~~g~~~~d~~g~~~--~~~~~~d~~~rk~~~~~~~~-~~~~~~~~~~~~~~~~~s~~~~lPLl~~a~~s---~~~~n~~ 363 (1152)
.++|.-+|+..-++. --++.+ ++.++..-+ ++..+-...+.+..+.++..+.|.|...+... .+.-|++
T Consensus 141 ~f~~~~~l~l~v~~ie~~D~~~~-----~~~~a~~~~~~~~~G~l~~nT~i~F~k~~~s~lnL~~~~~~k~~~n~ii~Pd 215 (744)
T KOG0741|consen 141 EFNGNKLLGLKVKDIEAFDPGIS-----EGESAVTKRQKIERGLLLGNTQIVFEKAENSSLNLIGKSKTKPASNSIINPD 215 (744)
T ss_pred EecCceEeeeEEEEEeeeccccc-----cCCcccccccceeeeEeecCcEEEEEeccCcceEeeccccccchhccccCCC
Confidence 556766777666543 133333 354444444 36655555677778899999999988763332 2677899
Q ss_pred ccccCCCceeeehhhhhccccchhhhhcccccccccccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC
Q 036794 364 WVHDYSGELGIFADHLLKHAVDSDLASEGRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG 443 (1152)
Q Consensus 364 ~~~d~sGeiGi~~d~Llk~~~~~dl~se~rs~~~~~l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~ 443 (1152)
|....+| ||-...++.+- ..+++..+. -.+++++.| .-+.-
T Consensus 216 f~Fe~mG-IGGLd~EFs~I------------------------FRRAFAsRv---------Fpp~vie~l-----Gi~HV 256 (744)
T KOG0741|consen 216 FNFESMG-IGGLDKEFSDI------------------------FRRAFASRV---------FPPEVIEQL-----GIKHV 256 (744)
T ss_pred CChhhcc-cccchHHHHHH------------------------HHHHHHhhc---------CCHHHHHHc-----Cccce
Confidence 9999888 76544432211 011222222 223333322 01112
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh----hC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV----TS 519 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~----~~ 519 (1152)
.++|||||||||||.+||.|.+-||...+... .|-. + ++.+-...-+.+|.++..+. ..
T Consensus 257 KGiLLyGPPGTGKTLiARqIGkMLNArePKIV-------------NGPe--I--L~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 257 KGILLYGPPGTGKTLIARQIGKMLNAREPKIV-------------NGPE--I--LNKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred eeEEEECCCCCChhHHHHHHHHHhcCCCCccc-------------CcHH--H--HHHhhcccHHHHHHHHHhHHHHHHhh
Confidence 36999999999999999999999997754321 1111 0 11111223456787776542 33
Q ss_pred CCCCCceEEEEeCCCCC-------------CHHHHHHHHHHHhh--CCCCEEEEEEcCCCCcchHHHHccce---EEEec
Q 036794 520 RPPSQYRIFVFDDCDTL-------------SPDSWSAISKVVDR--APRRVVFILVSSSLDALPHIIISRCQ---KFFFP 581 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~L-------------s~eaqnaLLklLEe--pp~~VifILaTN~~dkL~~aL~SR~q---vI~F~ 581 (1152)
...+.-.|||+||+|.+ .....|.||.-++. .-.++.+|..||..+.++++|++.+. ..++.
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIs 399 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEIS 399 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEe
Confidence 33456679999999976 33467888888775 33689999999999999999998654 36677
Q ss_pred CCChhHHHHHHHHH
Q 036794 582 KMKDADIIYTLQWI 595 (1152)
Q Consensus 582 ~p~~~EI~eiL~~i 595 (1152)
.|++.-..++++-+
T Consensus 400 LPDE~gRlQIl~IH 413 (744)
T KOG0741|consen 400 LPDEKGRLQILKIH 413 (744)
T ss_pred CCCccCceEEEEhh
Confidence 78887666655433
|
|
| >PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor | Back alignment and domain information |
|---|
Probab=98.93 E-value=2.8e-09 Score=111.22 Aligned_cols=145 Identities=18% Similarity=0.217 Sum_probs=84.2
Q ss_pred ccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEEeCC
Q 036794 423 LVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKEVGP 500 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviEIda 500 (1152)
|||.+..++.+.+.++. ...+..+||+|++||||+.+|++|++...... .||. ..+|..+.... ...++-...
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~----~pfi-~vnc~~~~~~~~e~~LFG~~~ 75 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRKN----GPFI-SVNCAALPEELLESELFGHEK 75 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTTT----S-EE-EEETTTS-HHHHHHHHHEBCS
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhccc----CCeE-EEehhhhhcchhhhhhhcccc
Confidence 58888888877776655 55566799999999999999999998543321 2221 12232221100 000111000
Q ss_pred CCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC----
Q 036794 501 VGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL---- 564 (1152)
Q Consensus 501 as~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~---- 564 (1152)
....+. ..-..+++. +.+++||||||+.|+...|..|+++|++. +.+++||++|+..
T Consensus 76 ~~~~~~~~~~~G~l~~-------A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~ 148 (168)
T PF00158_consen 76 GAFTGARSDKKGLLEQ-------ANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEEL 148 (168)
T ss_dssp SSSTTTSSEBEHHHHH-------TTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHH
T ss_pred ccccccccccCCceee-------ccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHH
Confidence 000000 000123333 46789999999999999999999999962 3589999999853
Q ss_pred ---CcchHHHHccceEEE
Q 036794 565 ---DALPHIIISRCQKFF 579 (1152)
Q Consensus 565 ---dkL~~aL~SR~qvI~ 579 (1152)
..+.+.|..|+..+.
T Consensus 149 v~~g~fr~dLy~rL~~~~ 166 (168)
T PF00158_consen 149 VEQGRFREDLYYRLNVFT 166 (168)
T ss_dssp HHTTSS-HHHHHHHTTEE
T ss_pred HHcCCChHHHHHHhceEe
Confidence 246677777776543
|
These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A .... |
| >TIGR00764 lon_rel lon-related putative ATP-dependent protease | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.2e-08 Score=120.83 Aligned_cols=126 Identities=11% Similarity=0.152 Sum_probs=90.6
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhC---------------------CCCEEEEEEcCCC--CcchHHHHccce---
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRA---------------------PRRVVFILVSSSL--DALPHIIISRCQ--- 576 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEep---------------------p~~VifILaTN~~--dkL~~aL~SR~q--- 576 (1152)
++++++||||++.|+...|..|+++|++. |.++.+|+++|.. ..+.++|++|+.
T Consensus 216 AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~~rf~~y~ 295 (608)
T TIGR00764 216 AHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALRSRIRGYG 295 (608)
T ss_pred CCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHHHHhcCCe
Confidence 45789999999999999999999999751 2367888888753 468889999987
Q ss_pred E-EEecC---CChhH---HHHHHHHHHHHcC--CCCCHHHHHHHHHh----------cCCCHHHHHHHHHHHHHh-----
Q 036794 577 K-FFFPK---MKDAD---IIYTLQWIASKEG--IEIDKDALKLIASR----------SDGSLRDAEMTLEQLSLL----- 632 (1152)
Q Consensus 577 v-I~F~~---p~~~E---I~eiL~~iakkeG--l~Id~dALelLAe~----------s~GDLR~Ain~LEkLsLl----- 632 (1152)
. +.|.. .+.+. +..++.+.+++.| ..++++|++.|.++ +..+.|++.+++..+...
T Consensus 296 v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A~~iA~~~~ 375 (608)
T TIGR00764 296 YEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAAGDIAKSSG 375 (608)
T ss_pred EEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHHHHhcC
Confidence 3 45543 22333 3455555566653 25899999999864 235689999998887432
Q ss_pred CCCCCHHHHHHHHhcc
Q 036794 633 GQRISVPLVQELVGLI 648 (1152)
Q Consensus 633 g~~IT~EdV~elVg~v 648 (1152)
...|+.++|.+++...
T Consensus 376 ~~~I~~ehV~~Ai~~~ 391 (608)
T TIGR00764 376 KVYVTAEHVLKAKKLA 391 (608)
T ss_pred CceecHHHHHHHHHHH
Confidence 2358999998877543
|
Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein. |
| >COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.7e-08 Score=116.89 Aligned_cols=175 Identities=21% Similarity=0.285 Sum_probs=113.8
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH-------cccCCCCC-CCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-------NCQSLEQP-KPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL-------~~~~~e~~-epcg~c~~c~~i~~g~ 491 (1152)
|.-++||+.....|.-.....++. .+||.|+.||||||++|+|+..| +|.+...+ .|-..|..|.......
T Consensus 16 f~aivGqd~lk~aL~l~av~P~ig-gvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 16 FTAIVGQDPLKLALGLNAVDPQIG-GALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred hhhhcCchHHHHHHhhhhcccccc-eeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhcccc
Confidence 889999999988776554455555 47999999999999999999976 44433322 4445677776652111
Q ss_pred c------cceEEeCCC---------CCCCHHHHHHHHHH-Hh-hCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhh-
Q 036794 492 S------RNIKEVGPV---------GNFDFESILDLLDN-MV-TSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDR- 550 (1152)
Q Consensus 492 ~------~dviEIdaa---------s~~~vdeIreLle~-a~-~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEe- 550 (1152)
. ..+-.++.. +..++. ..++. .. +.| ..++++|++|||+..|....++.||.++++
T Consensus 95 ~~~~~~~r~v~~v~lPl~ateDrvvGslDi~---ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd~LLd~aaeG 171 (423)
T COG1239 95 EWLPREKRKVPFVALPLGATEDRLVGSLDIE---KALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVDALLDVAAEG 171 (423)
T ss_pred ccccccceecceecCCCccchhhhccccCHH---HHHhcCccccCCcchhhccCCEEEEeccccccHHHHHHHHHHHHhC
Confidence 0 000011111 112221 12221 11 111 136789999999999999999999999987
Q ss_pred ------------CCCCEEEEEEcCCC-CcchHHHHccce-EEEecCC-ChhHHHHHHHHHHHH
Q 036794 551 ------------APRRVVFILVSSSL-DALPHIIISRCQ-KFFFPKM-KDADIIYTLQWIASK 598 (1152)
Q Consensus 551 ------------pp~~VifILaTN~~-dkL~~aL~SR~q-vI~F~~p-~~~EI~eiL~~iakk 598 (1152)
.|.++++|.+.|-. ..|.+.|+.||. .++...+ +.++.++++.+.+.-
T Consensus 172 ~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 172 VNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred CceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 45677777777633 368888999976 4665554 456667777666554
|
|
| >PHA02244 ATPase-like protein | Back alignment and domain information |
|---|
Probab=98.90 E-value=6.5e-08 Score=111.70 Aligned_cols=121 Identities=19% Similarity=0.269 Sum_probs=81.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE-EeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK-EVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi-EIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
..+||+||+|||||++|+++|..++......+ +. .. ..++. .+...+ .+. -..++..+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In--------~l-~d---~~~L~G~i~~~g--~~~-dgpLl~A~------ 178 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN--------AI-MD---EFELKGFIDANG--KFH-ETPFYEAF------ 178 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe--------cC-hH---HHhhcccccccc--ccc-chHHHHHh------
Confidence 34899999999999999999999875532111 00 00 00000 011111 111 01122222
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCC-----------CcchHHHHccceEEEe
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSL-----------DALPHIIISRCQKFFF 580 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~-----------dkL~~aL~SR~qvI~F 580 (1152)
..+.++||||++.++++++..|..++++ .+.++.||+++|.. ..+++++++||..|.|
T Consensus 179 ~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~I~~ 258 (383)
T PHA02244 179 KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAPIEF 258 (383)
T ss_pred hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEEeeC
Confidence 4568999999999999999999999974 34688999999852 4588999999999999
Q ss_pred cCCCh
Q 036794 581 PKMKD 585 (1152)
Q Consensus 581 ~~p~~ 585 (1152)
..++.
T Consensus 259 dyp~~ 263 (383)
T PHA02244 259 DYDEK 263 (383)
T ss_pred CCCcH
Confidence 88764
|
|
| >COG0714 MoxR-like ATPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.89 E-value=8.2e-08 Score=109.84 Aligned_cols=146 Identities=20% Similarity=0.278 Sum_probs=90.9
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
...++|++.++..+..++..+.. +||-||||||||++|+.+|+.++..+.... |.....
T Consensus 23 ~~~~~g~~~~~~~~l~a~~~~~~---vll~G~PG~gKT~la~~lA~~l~~~~~~i~--------~t~~l~---------- 81 (329)
T COG0714 23 EKVVVGDEEVIELALLALLAGGH---VLLEGPPGVGKTLLARALARALGLPFVRIQ--------CTPDLL---------- 81 (329)
T ss_pred CCeeeccHHHHHHHHHHHHcCCC---EEEECCCCccHHHHHHHHHHHhCCCeEEEe--------cCCCCC----------
Confidence 34488999988888877777653 799999999999999999999985432111 111100
Q ss_pred CCCCCCHHHHHHH---HHH--HhhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhh------------CCCCEEEEEEc
Q 036794 500 PVGNFDFESILDL---LDN--MVTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDR------------APRRVVFILVS 561 (1152)
Q Consensus 500 aas~~~vdeIreL---le~--a~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEe------------pp~~VifILaT 561 (1152)
+..-++...+... ... +...|.+ +-..++++|||+..++..+++|+.+|++ .+...++|++.
T Consensus 82 p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~ 161 (329)
T COG0714 82 PSDLLGTYAYAALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQ 161 (329)
T ss_pred HHHhcCchhHhhhhccCCeEEEecCCcccccceEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEcc
Confidence 0000111111111 000 1111211 1115999999999999999999999998 11334444444
Q ss_pred C-----CCCcchHHHHccc-eEEEecCCChh
Q 036794 562 S-----SLDALPHIIISRC-QKFFFPKMKDA 586 (1152)
Q Consensus 562 N-----~~dkL~~aL~SR~-qvI~F~~p~~~ 586 (1152)
| ....++++++.|| ..+.+..|...
T Consensus 162 Np~e~~g~~~l~eA~ldRf~~~~~v~yp~~~ 192 (329)
T COG0714 162 NPGEYEGTYPLPEALLDRFLLRIYVDYPDSE 192 (329)
T ss_pred CccccCCCcCCCHHHHhhEEEEEecCCCCch
Confidence 6 2335899999999 56667666333
|
|
| >TIGR01650 PD_CobS cobaltochelatase, CobS subunit | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-07 Score=108.73 Aligned_cols=174 Identities=17% Similarity=0.194 Sum_probs=103.5
Q ss_pred cccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc--cCCCccceEEe-
Q 036794 422 DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH--DRGKSRNIKEV- 498 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i--~~g~~~dviEI- 498 (1152)
+.+-.......+..++..++ .+||.||||||||++|+.+|+.++......+ |..-... ..|.. .+.+
T Consensus 46 ~y~f~~~~~~~vl~~l~~~~---~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~-----~~~~l~~~DliG~~--~~~l~ 115 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAYDR---RVMVQGYHGTGKSTHIEQIAARLNWPCVRVN-----LDSHVSRIDLVGKD--AIVLK 115 (327)
T ss_pred CccCCHHHHHHHHHHHhcCC---cEEEEeCCCChHHHHHHHHHHHHCCCeEEEE-----ecCCCChhhcCCCc--eeecc
Confidence 34445556666666665433 4899999999999999999999986542211 0000000 00100 0000
Q ss_pred CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------------CCCCEEEEEEcCCC
Q 036794 499 GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------------APRRVVFILVSSSL 564 (1152)
Q Consensus 499 daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------------pp~~VifILaTN~~ 564 (1152)
+....+.+ ....+..+. ..+.++++||++.+.++.++.|..+||. +.+..+||+++|..
T Consensus 116 ~g~~~~~f--~~GpL~~A~-----~~g~illlDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~ 188 (327)
T TIGR01650 116 DGKQITEF--RDGILPWAL-----QHNVALCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTI 188 (327)
T ss_pred CCcceeEE--ecCcchhHH-----hCCeEEEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCC
Confidence 00000000 000111111 2346799999999999999999999983 23467777777753
Q ss_pred C------------cchHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCC--CCHHHHHHHHHh
Q 036794 565 D------------ALPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIE--IDKDALKLIASR 614 (1152)
Q Consensus 565 d------------kL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~--Id~dALelLAe~ 614 (1152)
. .++++++.|+.+ +.+..|+.++-.++|...+. ++. .+++.++++++.
T Consensus 189 g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~~--~~~~~~~~~i~~~mV~l 251 (327)
T TIGR01650 189 GLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKAK--GFDDTEGKDIINAMVRV 251 (327)
T ss_pred CcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhcc--CCCccchHHHHHHHHHH
Confidence 2 478999999975 67888888888787765432 221 124455555443
|
This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model. |
| >COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.3e-08 Score=113.65 Aligned_cols=189 Identities=23% Similarity=0.342 Sum_probs=119.4
Q ss_pred ccCcHHHHHHHHHHHHh-------C-C------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 423 LVGQNLVAQALSNAVMR-------R-K------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~-------g-r------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+|||+.++..|.-++-. . . ....+||.||+|+|||.+|+.+|+.++.++.-.
T Consensus 63 VIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiA-------------- 128 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIA-------------- 128 (408)
T ss_pred eecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeec--------------
Confidence 78999888776543321 1 1 113699999999999999999999998663211
Q ss_pred CCCccceEEeCCCCCCC--HHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh-
Q 036794 489 RGKSRNIKEVGPVGNFD--FES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------------PDSWSAISKVVDR- 550 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~--vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls--------------~eaqnaLLklLEe- 550 (1152)
|...+.-+++.+ ++. +..++..+.+.-..+.+++|+|||||+++ ...|.+||+++|.
T Consensus 129 -----DATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGT 203 (408)
T COG1219 129 -----DATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGT 203 (408)
T ss_pred -----cccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCc
Confidence 111111223333 333 33445554444444778999999999983 3478999999997
Q ss_pred ----CC----------------CCEEEEEEcCC---------------------------------------CC-----c
Q 036794 551 ----AP----------------RRVVFILVSSS---------------------------------------LD-----A 566 (1152)
Q Consensus 551 ----pp----------------~~VifILaTN~---------------------------------------~d-----k 566 (1152)
|| .++.||+...- ++ -
T Consensus 204 vasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFG 283 (408)
T COG1219 204 VASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFG 283 (408)
T ss_pred eeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcC
Confidence 22 34455554210 00 0
Q ss_pred chHHHHccceE-EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc---CCCHHHHHHHHHHH
Q 036794 567 LPHIIISRCQK-FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASRS---DGSLRDAEMTLEQL 629 (1152)
Q Consensus 567 L~~aL~SR~qv-I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~s---~GDLR~Ain~LEkL 629 (1152)
|.|.+.-|+.+ ..+..++.+++..+|.. .+..+++ .++++||..+|+.+ .-..|-+.++++.+
T Consensus 284 LIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 284 LIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred CcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 34456667765 55788888888776642 2333444 47899999998872 23567777777776
Q ss_pred H
Q 036794 630 S 630 (1152)
Q Consensus 630 s 630 (1152)
.
T Consensus 364 l 364 (408)
T COG1219 364 L 364 (408)
T ss_pred H
Confidence 4
|
|
| >PRK13765 ATP-dependent protease Lon; Provisional | Back alignment and domain information |
|---|
Probab=98.87 E-value=6.2e-08 Score=119.35 Aligned_cols=123 Identities=15% Similarity=0.233 Sum_probs=85.3
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhC---------------------CCCEEEEEEcCCC--CcchHHHHccce---
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRA---------------------PRRVVFILVSSSL--DALPHIIISRCQ--- 576 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEep---------------------p~~VifILaTN~~--dkL~~aL~SR~q--- 576 (1152)
++++++||||++.|+...|..|+++|++. +.++.+|++++.. ..+.+.|.+|+.
T Consensus 225 AnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~~rfk~~~ 304 (637)
T PRK13765 225 AHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALRSRIKGYG 304 (637)
T ss_pred CCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHHHHhccCe
Confidence 45789999999999999999999999651 2367888888763 356788999985
Q ss_pred -EEEecCC---ChhHHHHHHHHHHHH---c--CCCCCHHHHHHHHHhc---CCC-------HHHHHHHHHHHHHhC----
Q 036794 577 -KFFFPKM---KDADIIYTLQWIASK---E--GIEIDKDALKLIASRS---DGS-------LRDAEMTLEQLSLLG---- 633 (1152)
Q Consensus 577 -vI~F~~p---~~~EI~eiL~~iakk---e--Gl~Id~dALelLAe~s---~GD-------LR~Ain~LEkLsLlg---- 633 (1152)
.++|..- +++.+..+++.+++. . -..++++|+..|++++ .|+ +|++.+++..+...+
T Consensus 305 v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a~~~a~~~~ 384 (637)
T PRK13765 305 YEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVAGDIARSEG 384 (637)
T ss_pred EEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHHHHHHHhhc
Confidence 3566542 244555555555543 2 2369999999998872 232 667777777654332
Q ss_pred -CCCCHHHHHHHH
Q 036794 634 -QRISVPLVQELV 645 (1152)
Q Consensus 634 -~~IT~EdV~elV 645 (1152)
..|+.++|.+++
T Consensus 385 ~~~i~~~~v~~a~ 397 (637)
T PRK13765 385 AELTTAEHVLEAK 397 (637)
T ss_pred cceecHHHHHHHH
Confidence 247778877665
|
|
| >smart00350 MCM minichromosome maintenance proteins | Back alignment and domain information |
|---|
Probab=98.86 E-value=1e-07 Score=115.40 Aligned_cols=157 Identities=13% Similarity=0.203 Sum_probs=95.9
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCC-----------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVG-----------LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~-----------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
...+.|++.++..|.-++-.|... ..+||+|+||||||++|+.+++......... +.-..|..+.
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~----~~~~~~~~l~ 277 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTT----GKGSSAVGLT 277 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcC----CCCCCcCCcc
Confidence 346889999988888777665211 2699999999999999999998764321100 0001111111
Q ss_pred CCCccceEEeCCC-CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCC
Q 036794 489 RGKSRNIKEVGPV-GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRR 554 (1152)
Q Consensus 489 ~g~~~dviEIdaa-s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~ 554 (1152)
.... .++. +.+.. +. ..-..++.++++|||++.++...+.+|+..|++. +.+
T Consensus 278 ~~~~-----~~~~~g~~~~-------~~--G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~ 343 (509)
T smart00350 278 AAVT-----RDPETREFTL-------EG--GALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNAR 343 (509)
T ss_pred ccce-----EccCcceEEe-------cC--ccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecCC
Confidence 1000 0000 00000 00 0011256789999999999999999999999872 356
Q ss_pred EEEEEEcCCCC-------------cchHHHHccceE--EEecCCChhHHHHHHHH
Q 036794 555 VVFILVSSSLD-------------ALPHIIISRCQK--FFFPKMKDADIIYTLQW 594 (1152)
Q Consensus 555 VifILaTN~~d-------------kL~~aL~SR~qv--I~F~~p~~~EI~eiL~~ 594 (1152)
+.+|+++|-.. .+++++++||.. +-...++.+.-.+++..
T Consensus 344 ~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~ 398 (509)
T smart00350 344 CSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKH 398 (509)
T ss_pred cEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHH
Confidence 77888887321 589999999963 33344555444444443
|
|
| >PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.2e-09 Score=112.26 Aligned_cols=101 Identities=17% Similarity=0.254 Sum_probs=64.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH----HHHHHHHHhh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES----ILDLLDNMVT 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde----IreLle~a~~ 518 (1152)
..+||+||+|+|||.+|+++|+.+. .... .+..++.......+. +..++.....
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~~~~~---------------------~~~~~d~s~~~~~~~~~~~~~~l~~~~~~ 62 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFVGSER---------------------PLIRIDMSEYSEGDDVESSVSKLLGSPPG 62 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-SSCC---------------------EEEEEEGGGHCSHHHCSCHCHHHHHHTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhccCCcc---------------------chHHHhhhcccccchHHhhhhhhhhcccc
Confidence 3689999999999999999999998 3321 122222211111111 1111111100
Q ss_pred CCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh-----------CCCCEEEEEEcCCCC
Q 036794 519 SRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR-----------APRRVVFILVSSSLD 565 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe-----------pp~~VifILaTN~~d 565 (1152)
........||+|||||++++ ..++.||++||+ .-.+++||+++|--.
T Consensus 63 ~v~~~~~gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 63 YVGAEEGGVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HHHHHHHTEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred eeeccchhhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 00012235999999999999 999999999997 226889999998544
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E .... |
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.86 E-value=8.1e-09 Score=129.20 Aligned_cols=148 Identities=21% Similarity=0.388 Sum_probs=111.6
Q ss_pred ccccccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC-------CCcEEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 400 LGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK-------VGLLYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 400 l~~~~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr-------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
+...+......+.+... +.|+||++++..+.++|...+ ....+||.||.|+|||.+|+++|..++...
T Consensus 545 ~~~~e~~~l~~L~~~L~----~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse- 619 (898)
T KOG1051|consen 545 LAEAEAERLKKLEERLH----ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSE- 619 (898)
T ss_pred hhhhHHHHHHHHHHHHH----hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCc-
Confidence 33344445556666664 679999999999999998733 344799999999999999999999986542
Q ss_pred CCCCCCCCCCccccccCCCccceEEe--CCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 036794 473 EQPKPCGFCNSCISHDRGKSRNIKEV--GPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550 (1152)
Q Consensus 473 e~~epcg~c~~c~~i~~g~~~dviEI--daas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe 550 (1152)
...+.++++.+..+... .+.++.+.+....+.+.+...|+ .||+||||+......++.|+++|++
T Consensus 620 ---------~~~IriDmse~~evskligsp~gyvG~e~gg~LteavrrrP~----sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 620 ---------ENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTEAVKRRPY----SVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred ---------cceEEechhhhhhhhhccCCCcccccchhHHHHHHHHhcCCc----eEEEEechhhcCHHHHHHHHHHHhc
Confidence 22344455544432222 23456788888889999988776 7999999999999999999999998
Q ss_pred C-----------CCCEEEEEEcCCCC
Q 036794 551 A-----------PRRVVFILVSSSLD 565 (1152)
Q Consensus 551 p-----------p~~VifILaTN~~d 565 (1152)
. -.+++|||++|.-.
T Consensus 687 GrltDs~Gr~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 687 GRLTDSHGREVDFKNAIFIMTSNVGS 712 (898)
T ss_pred CccccCCCcEeeccceEEEEecccch
Confidence 2 26899999988643
|
|
| >PF14840 DNA_pol3_delt_C: Processivity clamp loader gamma complex DNA pol III C-term; PDB: 3GLG_F 1XXH_A 3GLF_F 1JQJ_C 3GLI_F | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.3e-08 Score=99.83 Aligned_cols=106 Identities=21% Similarity=0.331 Sum_probs=88.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCc
Q 036794 653 LVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSK 720 (1152)
Q Consensus 653 ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~ 720 (1152)
.|+++|+++.||...++++|+.|..+|++|..|++.|++.++.|+..+..... .....+|+ .+++++
T Consensus 1 pF~L~Da~L~G~~~ra~riL~~L~~Eg~ep~~lLw~L~rElr~L~~l~~~~~~-~~l~~~~~~~rIW~~Rq~l~~~Al~R 79 (125)
T PF14840_consen 1 PFQLIDALLAGDAKRALRILQGLQAEGVEPPILLWALQRELRLLIQLKQALAQ-QPLQQLFKQLRIWQKRQPLYQQALQR 79 (125)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHTTT-S-HHHHHHHHTT-CCHHHHHHHHHHH
T ss_pred CCcHHHHHHCCCHHHHHHHHHHHHHCCccHHHHHHHHHHHHHHHHHHHHHHhC-CCHHHHHHHcCCCHhHHHHHHHHHHc
Confidence 38999999999999999999999999999999999999999999998876654 33333333 235668
Q ss_pred ccHHHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHcCC
Q 036794 721 EEMEKLRQALKTLSEAEKQLRM--SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 721 ~s~~kL~qaL~~L~eaD~qLK~--s~dprl~LE~lLLkLa~ 759 (1152)
.+...|++++..+..+|..+|+ ..+++..|+.+.+.||.
T Consensus 80 ls~~~L~~ll~~~a~iD~~iKg~~~~~~W~~L~~L~L~lc~ 120 (125)
T PF14840_consen 80 LSLQQLEQLLQLLAQIDRAIKGNYQGDPWDELEQLSLLLCG 120 (125)
T ss_dssp S-HHHHHHHHHHHHHHHHHHHTSTTSTHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHcC
Confidence 9999999999999999999999 67999999999999996
|
|
| >COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=4.9e-08 Score=120.97 Aligned_cols=204 Identities=18% Similarity=0.189 Sum_probs=147.4
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...+++.-|-..++.++|.+..+..+...+.+....++ +|.|+||+|||.++..+|..+-....+..
T Consensus 157 ~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNP-vLiGEpGVGKTAIvEGLA~rIv~g~VP~~------------ 223 (786)
T COG0542 157 TRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNP-VLVGEPGVGKTAIVEGLAQRIVNGDVPES------------ 223 (786)
T ss_pred hhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCC-eEecCCCCCHHHHHHHHHHHHhcCCCCHH------------
Confidence 34455556667889999999999888888877666654 58899999999999999998865443321
Q ss_pred cCCCccceEEeC------CCCCCC--HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVG------PVGNFD--FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEId------aas~~~--vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLEe 550 (1152)
-....++.+| ++...+ -+.+..+++.+...+ .-|+||||+|.+- .++.|.|...|..
T Consensus 224 --L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~----~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLAR 297 (786)
T COG0542 224 --LKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK----NVILFIDEIHTIVGAGATEGGAMDAANLLKPALAR 297 (786)
T ss_pred --HcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC----CeEEEEechhhhcCCCcccccccchhhhhHHHHhc
Confidence 0011122222 112222 245777888876543 5899999999872 3466788888876
Q ss_pred CCCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC---
Q 036794 551 APRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS--- 618 (1152)
Q Consensus 551 pp~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD--- 618 (1152)
....+|.+|+..+ .-+++|.+|+|.|.+..|+.++...+|+-+... .++.|+++|+...+..+...
T Consensus 298 --GeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~d 375 (786)
T COG0542 298 --GELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPD 375 (786)
T ss_pred --CCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhccc
Confidence 6889999997432 256789999999999999999999998877654 58899999999888775432
Q ss_pred ---HHHHHHHHHHHHHh
Q 036794 619 ---LRDAEMTLEQLSLL 632 (1152)
Q Consensus 619 ---LR~Ain~LEkLsLl 632 (1152)
...|+..||.++..
T Consensus 376 R~LPDKAIDLiDeA~a~ 392 (786)
T COG0542 376 RFLPDKAIDLLDEAGAR 392 (786)
T ss_pred CCCCchHHHHHHHHHHH
Confidence 23688888887543
|
|
| >TIGR00368 Mg chelatase-related protein | Back alignment and domain information |
|---|
Probab=98.81 E-value=1e-07 Score=114.85 Aligned_cols=156 Identities=17% Similarity=0.218 Sum_probs=95.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC--C-----
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR--G----- 490 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~--g----- 490 (1152)
..|++++||+.+++.+.-++..+ +.++|.||+|+|||++|+.++..+....... +..+..+.. +
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~~g---~~vlliG~pGsGKTtlar~l~~llp~~~~~~------~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAAGG---HNLLLFGPPGSGKTMLASRLQGILPPLTNEE------AIETARIWSLVGKLIDR 259 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhccCC---CEEEEEecCCCCHHHHHHHHhcccCCCCCcE------EEeccccccchhhhccc
Confidence 37999999999988887776543 5799999999999999999987653221100 000000000 0
Q ss_pred ---CccceEEeCCCCCCCHHHHHHHHHHH-hhC---CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC------------
Q 036794 491 ---KSRNIKEVGPVGNFDFESILDLLDNM-VTS---RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA------------ 551 (1152)
Q Consensus 491 ---~~~dviEIdaas~~~vdeIreLle~a-~~~---P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep------------ 551 (1152)
....+...... .... .++... ... -..+.++++||||++.|+...++.|+..||+.
T Consensus 260 ~~~~~~Pf~~p~~s--~s~~---~~~ggg~~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~ 334 (499)
T TIGR00368 260 KQIKQRPFRSPHHS--ASKP---ALVGGGPIPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIF 334 (499)
T ss_pred cccccCCccccccc--cchh---hhhCCccccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCccee
Confidence 00000000000 0000 000000 000 01256789999999999999999999999873
Q ss_pred -CCCEEEEEEcCCC-----------------------CcchHHHHccceE-EEecCCChhH
Q 036794 552 -PRRVVFILVSSSL-----------------------DALPHIIISRCQK-FFFPKMKDAD 587 (1152)
Q Consensus 552 -p~~VifILaTN~~-----------------------dkL~~aL~SR~qv-I~F~~p~~~E 587 (1152)
+.++.+|+++|.- .++..+|++|+.. +.+++++..+
T Consensus 335 ~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 335 YPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred ccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 4678899998731 1577789999985 6777765443
|
The N-terminal end matches very strongly a pfam Mg_chelatase domain. |
| >TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.2e-07 Score=116.45 Aligned_cols=200 Identities=16% Similarity=0.173 Sum_probs=117.8
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI 509 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeI 509 (1152)
+..|.-..-...+++ +||.|++|||||++|++|++.+....+....+++. ..+. + .+..+ +
T Consensus 4 ~~Al~l~av~p~~g~-vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~-----------t~d~--L--~G~id---l 64 (589)
T TIGR02031 4 KLALTLLAVDPSLGG-VAIRARAGTGKTALARALAEILPPIMPFVELPLGV-----------TEDR--L--IGGID---V 64 (589)
T ss_pred HHHHHHhccCCCcce-EEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCccc-----------chhh--c--ccchh---h
Confidence 333333333344554 89999999999999999999876431100011100 0000 0 00000 0
Q ss_pred HHHHHH----HhhCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCCEEEEEEcCCCC---cch
Q 036794 510 LDLLDN----MVTSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRRVVFILVSSSLD---ALP 568 (1152)
Q Consensus 510 reLle~----a~~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~VifILaTN~~d---kL~ 568 (1152)
...+.. +..-+. .+.+++|||||++.+++..++.|+.+|++. +.++.||+++|..+ .++
T Consensus 65 ~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~ 144 (589)
T TIGR02031 65 EESLAGGQRVTQPGLLDEAPRGVLYVDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLP 144 (589)
T ss_pred hhhhhcCcccCCCCCeeeCCCCcEeccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCC
Confidence 100000 001111 256689999999999999999999999873 24567777666443 699
Q ss_pred HHHHccceE-EEecC-CChhHHHHHHHHHH---------------------H--HcCCCCCHHHHHHHHHh---cCC-CH
Q 036794 569 HIIISRCQK-FFFPK-MKDADIIYTLQWIA---------------------S--KEGIEIDKDALKLIASR---SDG-SL 619 (1152)
Q Consensus 569 ~aL~SR~qv-I~F~~-p~~~EI~eiL~~ia---------------------k--keGl~Id~dALelLAe~---s~G-DL 619 (1152)
++|+.|+.. +.+.. ++.++..++++... + ...+.++++++++|+.. .+- .+
T Consensus 145 ~~LldRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~ 224 (589)
T TIGR02031 145 DHLLDRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGH 224 (589)
T ss_pred HHHHHhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCc
Confidence 999999885 44433 34444444443322 1 13567899998888877 222 36
Q ss_pred HHHHHHHHHH---HHhCC--CCCHHHHHHHHhcc
Q 036794 620 RDAEMTLEQL---SLLGQ--RISVPLVQELVGLI 648 (1152)
Q Consensus 620 R~Ain~LEkL---sLlg~--~IT~EdV~elVg~v 648 (1152)
|..+.++.-+ +.+.+ .++.+||..++..+
T Consensus 225 Ra~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 225 RADLFAVRAAKAHAALHGRTEVTEEDLKLAVELV 258 (589)
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHH
Confidence 7666665543 44433 48999988887654
|
This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea. |
| >smart00763 AAA_PrkA PrkA AAA domain | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.1e-07 Score=109.59 Aligned_cols=196 Identities=16% Similarity=0.177 Sum_probs=121.0
Q ss_pred CCcC-cccCcHHHHHHHHHHHHhC-----CCCcEEEEEcCCCchHHHHHHHHHHHHccc-------------------CC
Q 036794 418 RTFR-DLVGQNLVAQALSNAVMRR-----KVGLLYVFYGPHGTGKTSCARIFARALNCQ-------------------SL 472 (1152)
Q Consensus 418 ~sFd-dLVGQe~v~q~Lk~aL~~g-----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~-------------------~~ 472 (1152)
..|+ +++|+++++..|.++++.. .....++|+||||+|||++|++|++.++.- ..
T Consensus 47 ~~F~~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~ 126 (361)
T smart00763 47 RFFDHDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMH 126 (361)
T ss_pred cccchhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCc
Confidence 3688 8999999998888877662 223578999999999999999999988541 11
Q ss_pred CCC-------------CCC---------CCCCcccccc----CCCccceE---------------EeCCCCCCCHHHHHH
Q 036794 473 EQP-------------KPC---------GFCNSCISHD----RGKSRNIK---------------EVGPVGNFDFESILD 511 (1152)
Q Consensus 473 e~~-------------epc---------g~c~~c~~i~----~g~~~dvi---------------EIdaas~~~vdeIre 511 (1152)
+.+ ..+ ..|.-|.... .|....+. .+.+. .-.-.++.+
T Consensus 127 e~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~-D~~~qdi~~ 205 (361)
T smart00763 127 EDPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPK-DENNQDISE 205 (361)
T ss_pred cCCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCC-CCCcccHHH
Confidence 110 000 1133333322 12111110 01111 111112333
Q ss_pred HHHHHh----------------h--CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcC
Q 036794 512 LLDNMV----------------T--SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSS 562 (1152)
Q Consensus 512 Lle~a~----------------~--~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN 562 (1152)
++..+. + .-..+.++++-++|+.+...+.++.||.++++ .+.+.+||+++|
T Consensus 206 L~G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sN 285 (361)
T smart00763 206 LTGKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSN 285 (361)
T ss_pred HhcccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCC
Confidence 322110 0 00124678999999999999999999999997 223466777777
Q ss_pred CC-------CcchHHHHccceEEEecCCC-hhHHHHHHHHHHHHc---CCCCCHHHHHHHHHh
Q 036794 563 SL-------DALPHIIISRCQKFFFPKMK-DADIIYTLQWIASKE---GIEIDKDALKLIASR 614 (1152)
Q Consensus 563 ~~-------dkL~~aL~SR~qvI~F~~p~-~~EI~eiL~~iakke---Gl~Id~dALelLAe~ 614 (1152)
.. .+..++|+.||..+.++.+. ..+=.++.++.+... +..+.+.+++.++..
T Consensus 286 e~e~~~~~~~k~~eaf~dR~~~i~vpY~l~~~~E~~Iy~k~~~~s~~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 286 ESEWQRFKSNKKNEALLDRIIKVKVPYCLRVSEEAQIYEKLLRNSDLTEAHIAPHTLEMAALF 348 (361)
T ss_pred HHHHhhhhccccchhhhhceEEEeCCCcCCHHHHHHHHHHHhccCcCcccccCchHHHHHHHH
Confidence 55 25688999999998887654 344445556555533 566788887777655
|
This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain. |
| >PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.3e-08 Score=99.17 Aligned_cols=126 Identities=23% Similarity=0.314 Sum_probs=83.8
Q ss_pred cCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC
Q 036794 424 VGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG 502 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas 502 (1152)
||....++.+.+.+.. ......+||+|++||||+++|+.|+........ |+ .+..|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~----~~-~~~~~~~~~-------------- 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRANG----PF-IVIDCASLP-------------- 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-----C-CCCCHHCTC--------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCC----Ce-EEechhhCc--------------
Confidence 5777888888877765 355556999999999999999999886443211 11 111222111
Q ss_pred CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-CCCEEEEEEcCCC-C------cchHHHHcc
Q 036794 503 NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSL-D------ALPHIIISR 574 (1152)
Q Consensus 503 ~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-p~~VifILaTN~~-d------kL~~aL~SR 574 (1152)
.++++. ...++|||+|++.|+.+.|..|+.+|+.. ..++++|+++... . .+.+.|..+
T Consensus 62 -------~~~l~~-------a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~ 127 (138)
T PF14532_consen 62 -------AELLEQ-------AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYR 127 (138)
T ss_dssp -------HHHHHH-------CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHH
T ss_pred -------HHHHHH-------cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHH
Confidence 234444 25589999999999999999999999863 5788999988643 2 366677777
Q ss_pred ce--EEEecC
Q 036794 575 CQ--KFFFPK 582 (1152)
Q Consensus 575 ~q--vI~F~~ 582 (1152)
+. .|.+|+
T Consensus 128 l~~~~i~lPp 137 (138)
T PF14532_consen 128 LSQLEIHLPP 137 (138)
T ss_dssp CSTCEEEE--
T ss_pred hCCCEEeCCC
Confidence 65 455554
|
|
| >KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.2e-08 Score=108.53 Aligned_cols=133 Identities=23% Similarity=0.361 Sum_probs=89.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCC-------------HHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFD-------------FESIL 510 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~-------------vdeIr 510 (1152)
..+|++||||||||++++++|+.+.-..... -.+..++|++..+-+. +++|.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~---------------y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ 242 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDR---------------YYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQ 242 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCc---------------cccceEEEEehhHHHHHHHhhhhhHHHHHHHHHH
Confidence 4799999999999999999999986442111 1122355665432211 23333
Q ss_pred HHHHHHhhCCCCCCceEEEEeCCCCCCH---------------HHHHHHHHHHhhCC-CCEEEEEEcCC-CCcchHHHHc
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDCDTLSP---------------DSWSAISKVVDRAP-RRVVFILVSSS-LDALPHIIIS 573 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEID~Ls~---------------eaqnaLLklLEepp-~~VifILaTN~-~dkL~~aL~S 573 (1152)
++++. .+....|+|||++.+.. .+.|+||.-|+... .+-++|++|.+ .+.++.++..
T Consensus 243 ELv~d------~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~siD~AfVD 316 (423)
T KOG0744|consen 243 ELVED------RGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTDSIDVAFVD 316 (423)
T ss_pred HHHhC------CCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHHHHHHHhhh
Confidence 33332 24456788999998732 25789999998843 34455666655 4689999999
Q ss_pred cceE-EEecCCChhHHHHHHHHHHH
Q 036794 574 RCQK-FFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 574 R~qv-I~F~~p~~~EI~eiL~~iak 597 (1152)
|..+ +.+.+|+...+..+++.-..
T Consensus 317 RADi~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 317 RADIVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred HhhheeecCCccHHHHHHHHHHHHH
Confidence 9995 66788888888887765544
|
|
| >PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids [] | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-08 Score=101.39 Aligned_cols=115 Identities=23% Similarity=0.375 Sum_probs=66.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc-cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH-DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i-~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a 523 (1152)
.+||+||||||||++|+.+|+.++...... .|... ............ .....+.. ..+.. ...
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i--------~~~~~~~~~dl~g~~~~~-~~~~~~~~-~~l~~------a~~ 64 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRI--------NCSSDTTEEDLIGSYDPS-NGQFEFKD-GPLVR------AMR 64 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEE--------E-TTTSTHHHHHCEEET--TTTTCEEE--CCCT------THH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEE--------Eeccccccccceeeeeec-cccccccc-ccccc------ccc
Confidence 379999999999999999999985432110 00000 000000000100 00000000 00000 001
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCC------CEEEEEEcCCCC----cchHHHHccc
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR-------------APR------RVVFILVSSSLD----ALPHIIISRC 575 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~------~VifILaTN~~d----kL~~aL~SR~ 575 (1152)
+..++||||++...++.++.|+.+|++ .+. +.+||+++|..+ .++++|++||
T Consensus 65 ~~~il~lDEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 65 KGGILVLDEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp EEEEEEESSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred ceeEEEECCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 568999999999999999999999987 112 388999998777 7999999986
|
The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >PTZ00111 DNA replication licensing factor MCM4; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.8e-06 Score=108.78 Aligned_cols=141 Identities=10% Similarity=0.035 Sum_probs=88.2
Q ss_pred CcccCcHHHHHHHHHHHHhCC--------------------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 421 RDLVGQNLVAQALSNAVMRRK--------------------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gr--------------------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
-.|.|++.++..|.-++-.|- ....+||.|+||||||.+|+.+++...........++..
T Consensus 450 P~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~ 529 (915)
T PTZ00111 450 PSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSS 529 (915)
T ss_pred CeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCcc
Confidence 468899999988877775542 112699999999999999999998643221111111111
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---------
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--------- 551 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep--------- 551 (1152)
..|.... ...+... ..+ .++ . ..-..+..++++|||++.|+...+.+|+.+||+.
T Consensus 530 -vgLTa~~-------~~~d~~t-G~~-----~le-~-GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~KaGi 593 (915)
T PTZ00111 530 -VGLTASI-------KFNESDN-GRA-----MIQ-P-GAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIAKAGI 593 (915)
T ss_pred -ccccchh-------hhccccc-Ccc-----ccc-C-CcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEecCCc
Confidence 0111110 0000000 000 000 0 0011256789999999999999999999999873
Q ss_pred ----CCCEEEEEEcCCC-------------CcchHHHHccceE
Q 036794 552 ----PRRVVFILVSSSL-------------DALPHIIISRCQK 577 (1152)
Q Consensus 552 ----p~~VifILaTN~~-------------dkL~~aL~SR~qv 577 (1152)
+.++.||+++|-. -.|+++|++||..
T Consensus 594 ~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDL 636 (915)
T PTZ00111 594 VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDL 636 (915)
T ss_pred ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcE
Confidence 3578888888742 1488999999974
|
|
| >COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.66 E-value=4.7e-08 Score=114.72 Aligned_cols=136 Identities=21% Similarity=0.254 Sum_probs=78.6
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc---e
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN---I 495 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d---v 495 (1152)
.|.||+||+.++++|.-+...| |.+||+||||||||.+|+-+...|-....+.- ...+......+.... +
T Consensus 177 D~~DV~GQ~~AKrAleiAAAGg---HnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~----lE~s~I~s~~g~~~~~~~~ 249 (490)
T COG0606 177 DFKDVKGQEQAKRALEIAAAGG---HNLLLVGPPGTGKTMLASRLPGLLPPLSIPEA----LEVSAIHSLAGDLHEGCPL 249 (490)
T ss_pred chhhhcCcHHHHHHHHHHHhcC---CcEEEecCCCCchHHhhhhhcccCCCCChHHH----HHHHHHhhhcccccccCcc
Confidence 6999999999999998887665 56999999999999999988664422111000 000000000000000 0
Q ss_pred EEeCCCCCCCH-HHHHHHHHHHhhCCC-----CCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCEE
Q 036794 496 KEVGPVGNFDF-ESILDLLDNMVTSRP-----PSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRVV 556 (1152)
Q Consensus 496 iEIdaas~~~v-deIreLle~a~~~P~-----~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~Vi 556 (1152)
...-+-....- .....++-.- ..|. -+.++|+||||+..+.....+.|..-||+ +|.+..
T Consensus 250 ~~~rPFr~PHHsaS~~aLvGGG-~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~~v~ypa~Fq 328 (490)
T COG0606 250 KIHRPFRAPHHSASLAALVGGG-GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGSKVTYPARFQ 328 (490)
T ss_pred ceeCCccCCCccchHHHHhCCC-CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCCeeEEeeeeE
Confidence 00000000000 0001111110 1111 15678999999999999999999999987 456667
Q ss_pred EEEEcC
Q 036794 557 FILVSS 562 (1152)
Q Consensus 557 fILaTN 562 (1152)
+|+++|
T Consensus 329 lv~AmN 334 (490)
T COG0606 329 LVAAMN 334 (490)
T ss_pred EhhhcC
Confidence 777776
|
|
| >KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.2e-06 Score=106.00 Aligned_cols=187 Identities=19% Similarity=0.241 Sum_probs=127.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
..++||+||+|+|||.+++++++++......+ ..++..........+.+...+..+......
T Consensus 431 ~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~h------------------v~~v~Cs~l~~~~~e~iQk~l~~vfse~~~ 492 (952)
T KOG0735|consen 431 HGNILLNGPKGSGKTNLVKALFDYYSKDLIAH------------------VEIVSCSTLDGSSLEKIQKFLNNVFSEALW 492 (952)
T ss_pred cccEEEeCCCCCCHhHHHHHHHHHhccccceE------------------EEEEechhccchhHHHHHHHHHHHHHHHHh
Confidence 34699999999999999999999976332110 001111122223466777666665444444
Q ss_pred CCceEEEEeCCCCCCHH----------HHHHHH----HHHhh---CCCCEEEEEEcCCCCcchHHHHcc--ce-EEEecC
Q 036794 523 SQYRIFVFDDCDTLSPD----------SWSAIS----KVVDR---APRRVVFILVSSSLDALPHIIISR--CQ-KFFFPK 582 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e----------aqnaLL----klLEe---pp~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~ 582 (1152)
-.+.||+||++|.+... ..+.|. +++.. ....+.||++.+....+.+.|.+. ++ ++.+++
T Consensus 493 ~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~a 572 (952)
T KOG0735|consen 493 YAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPA 572 (952)
T ss_pred hCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCC
Confidence 45679999999988431 112222 33222 445678888888888888877654 44 478899
Q ss_pred CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHhC---------CCCCHHHHHHHHhc
Q 036794 583 MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMTLEQLSLLG---------QRISVPLVQELVGL 647 (1152)
Q Consensus 583 p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~LEkLsLlg---------~~IT~EdV~elVg~ 647 (1152)
|...++.++|..++++....+..+.+++++..++| ..+++.-..+++...+ +-+|.+++.+.+..
T Consensus 573 p~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris~~~klltke~f~ksL~~ 647 (952)
T KOG0735|consen 573 PAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERISNGPKLLTKELFEKSLKD 647 (952)
T ss_pred cchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhccCcccchHHHHHHHHHh
Confidence 99999999999999988878888899999999998 7888888888875432 13566666655543
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.3e-07 Score=85.39 Aligned_cols=119 Identities=19% Similarity=0.206 Sum_probs=68.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc---------eEEeCCCCCCCHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN---------IKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d---------viEIdaas~~~vdeIreLle 514 (1152)
..++|+||+|||||++++.++..+..... .+..+....... ....+.........+..+++
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 72 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGG----------GVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALA 72 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCC----------CEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHH
Confidence 46899999999999999999998876520 011111110000 01111112233445555555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHHHHHHHHH--------HHhhCCCCEEEEEEcCC-CCcchHHHHccce
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISK--------VVDRAPRRVVFILVSSS-LDALPHIIISRCQ 576 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLk--------lLEepp~~VifILaTN~-~dkL~~aL~SR~q 576 (1152)
.+...+ ..+|||||++.+.......+.. ..........+|+++|. ....+..+..+..
T Consensus 73 ~~~~~~----~~viiiDei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 139 (148)
T smart00382 73 LARKLK----PDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFD 139 (148)
T ss_pred HHHhcC----CCEEEEECCcccCCHHHHHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccc
Confidence 554333 4899999999998776554443 22334567788888885 2233444443433
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.52 E-value=2e-06 Score=103.74 Aligned_cols=153 Identities=16% Similarity=0.237 Sum_probs=93.7
Q ss_pred CCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc--CCC----
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD--RGK---- 491 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~--~g~---- 491 (1152)
..|.++.|+..+++.+.-++.. ++.++|.||+|+|||++++.++..+.....+. ...+..+. .|.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa~~---G~~llliG~~GsGKTtLak~L~gllpp~~g~e------~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITAAG---GHNLLLIGPPGTGKTMLASRINGLLPDLSNEE------ALESAAILSLVNAESVQ 258 (506)
T ss_pred cCeEEEECcHHHHhhhheeccC---CcEEEEECCCCCcHHHHHHHHhccCCCCCCcE------EEecchhhhhhcccccc
Confidence 3788999999888877655543 46799999999999999999987654221110 00011110 000
Q ss_pred ----ccceEEeCCCCCCCHHHHHHHHHH-HhhC---CCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------
Q 036794 492 ----SRNIKEVGPVGNFDFESILDLLDN-MVTS---RPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------------- 550 (1152)
Q Consensus 492 ----~~dviEIdaas~~~vdeIreLle~-a~~~---P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------------- 550 (1152)
.+.+.. +....+.. .++-. .... -..+.++++||||++.+....++.|++.||+
T Consensus 259 ~~~~~rPfr~--ph~~~s~~---~l~GGg~~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~~~~ 333 (506)
T PRK09862 259 KQWRQRPFRS--PHHSASLT---AMVGGGAIPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRAKIT 333 (506)
T ss_pred CCcCCCCccC--CCccchHH---HHhCCCceehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCccee
Confidence 000000 00000000 01100 0000 0125678999999999999999999999977
Q ss_pred CCCCEEEEEEcCCC---------------------CcchHHHHccceE-EEecCCC
Q 036794 551 APRRVVFILVSSSL---------------------DALPHIIISRCQK-FFFPKMK 584 (1152)
Q Consensus 551 pp~~VifILaTN~~---------------------dkL~~aL~SR~qv-I~F~~p~ 584 (1152)
.+.++.+|+++|.. .++..++++|+.. +.+++++
T Consensus 334 ~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~ 389 (506)
T PRK09862 334 YPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPP 389 (506)
T ss_pred ccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCC
Confidence 25678888888743 1477789999985 7777664
|
|
| >PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.9e-07 Score=93.53 Aligned_cols=111 Identities=19% Similarity=0.267 Sum_probs=57.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc-cccCCCccceEEeCCC-CCCCHHHHHHHHHHHhhCCCCC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI-SHDRGKSRNIKEVGPV-GNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~-~i~~g~~~dviEIdaa-s~~~vdeIreLle~a~~~P~~a 523 (1152)
+||.|+||+|||++|+++|+.++..+.... |. ...-....++...+.. +.+. +...|.+
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~RIq--------~tpdllPsDi~G~~v~~~~~~~f~----------~~~GPif- 62 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFKRIQ--------FTPDLLPSDILGFPVYDQETGEFE----------FRPGPIF- 62 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EEEEE----------TT--HHHHHEEEEEETTTTEEE----------EEE-TT--
T ss_pred EeeECCCccHHHHHHHHHHHHcCCceeEEE--------ecCCCCcccceeeeeeccCCCeeE----------eecChhh-
Confidence 799999999999999999999887642111 00 0000000111111110 0000 0112222
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCCC-----cchHHHHccce
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSLD-----ALPHIIISRCQ 576 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~d-----kL~~aL~SR~q 576 (1152)
..|+++||+...++..|.+||..++| .|....+|++-|..+ .+|++++.|+.
T Consensus 63 -~~ill~DEiNrappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 -TNILLADEINRAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp -SSEEEEETGGGS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred -hceeeecccccCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 25999999999999999999999998 233445555556444 58888888863
|
AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A. |
| >COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.49 E-value=2.6e-06 Score=96.29 Aligned_cols=123 Identities=22% Similarity=0.272 Sum_probs=88.2
Q ss_pred ceEEEEeCCCCCCH------------HHHHHHHHHHhh----------CCCCEEEEEEc----CCCCcchHHHHccceE-
Q 036794 525 YRIFVFDDCDTLSP------------DSWSAISKVVDR----------APRRVVFILVS----SSLDALPHIIISRCQK- 577 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~------------eaqnaLLklLEe----------pp~~VifILaT----N~~dkL~~aL~SR~qv- 577 (1152)
.++|||||||++.. ..|.-||.++|. ...++.||.+. ..|..|.|.|.-|+.+
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIR 330 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceE
Confidence 57999999998732 356789999886 23566777765 3577788889999984
Q ss_pred EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHhc-------C-CCHHHHHHHHHHHH----Hh
Q 036794 578 FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASRS-------D-GSLRDAEMTLEQLS----LL 632 (1152)
Q Consensus 578 I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~s-------~-GDLR~Ain~LEkLs----Ll 632 (1152)
+.+..++.+++..+|.. .++-+|+ .++++|++.||+.+ + =..|.+...|+++. +.
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~vN~~~ENIGARRLhTvlErlLediSFe 410 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQVNEKTENIGARRLHTVLERLLEDISFE 410 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHhCcc
Confidence 99999999998876642 2344565 47999999999882 1 24678888887763 22
Q ss_pred C-----C--CCCHHHHHHHHhc
Q 036794 633 G-----Q--RISVPLVQELVGL 647 (1152)
Q Consensus 633 g-----~--~IT~EdV~elVg~ 647 (1152)
+ + .|+.+-|.+-++.
T Consensus 411 A~d~~g~~v~Id~~yV~~~l~~ 432 (444)
T COG1220 411 APDMSGQKVTIDAEYVEEKLGD 432 (444)
T ss_pred CCcCCCCeEEEcHHHHHHHHHH
Confidence 2 2 2777777776654
|
|
| >PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins | Back alignment and domain information |
|---|
Probab=98.48 E-value=6.6e-06 Score=92.99 Aligned_cols=207 Identities=14% Similarity=0.133 Sum_probs=116.3
Q ss_pred ccCcHHHH---HHHHHHHHhCCC--CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 423 LVGQNLVA---QALSNAVMRRKV--GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 423 LVGQe~v~---q~Lk~aL~~gri--~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
-||.+.+. +.|...+...+. .+++||+|++|.|||++++.|.+.-....... .....++.
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~---------------~~~~PVv~ 100 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDED---------------AERIPVVY 100 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCC---------------CccccEEE
Confidence 37766544 455555555322 24699999999999999999988643211000 00112333
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCC------------------CCceEEEEeCCCCCCH---HHHHHHHHHHhhC--CCC
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPP------------------SQYRIFVFDDCDTLSP---DSWSAISKVVDRA--PRR 554 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~------------------a~~kVVIIDEID~Ls~---eaqnaLLklLEep--p~~ 554 (1152)
+.....-+...+-..+-.....|+. -+-+++||||+|.+-. ..+..++.+|... .-.
T Consensus 101 vq~P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ 180 (302)
T PF05621_consen 101 VQMPPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQ 180 (302)
T ss_pred EecCCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccC
Confidence 3222211111111111111111110 2347999999999632 2233333333221 134
Q ss_pred EEEEEEcCCC--C--cchHHHHccceEEEecCCCh-hHHHHHHHHHHHHcCC----C-CCHHHHHHHHHhcCCCHHHHHH
Q 036794 555 VVFILVSSSL--D--ALPHIIISRCQKFFFPKMKD-ADIIYTLQWIASKEGI----E-IDKDALKLIASRSDGSLRDAEM 624 (1152)
Q Consensus 555 VifILaTN~~--d--kL~~aL~SR~qvI~F~~p~~-~EI~eiL~~iakkeGl----~-Id~dALelLAe~s~GDLR~Ain 624 (1152)
+.+|++.+.. . .-++.+.+|+..+.+++-.. ++....|..+-....+ . -+++....|...++|.+.++..
T Consensus 181 ipiV~vGt~~A~~al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ 260 (302)
T PF05621_consen 181 IPIVGVGTREAYRALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSR 260 (302)
T ss_pred CCeEEeccHHHHHHhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHH
Confidence 4455554321 1 24567999999988887654 3555555554433222 1 3566778999999999999999
Q ss_pred HHHHHHHh-----CCCCCHHHHHHH
Q 036794 625 TLEQLSLL-----GQRISVPLVQEL 644 (1152)
Q Consensus 625 ~LEkLsLl-----g~~IT~EdV~el 644 (1152)
+|..++.. .+.||.+.+..+
T Consensus 261 ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 261 LLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHHHHHhcCCceecHHHHhhC
Confidence 99998655 235998877764
|
TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition []. |
| >KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.45 E-value=1.5e-06 Score=97.03 Aligned_cols=130 Identities=27% Similarity=0.375 Sum_probs=82.5
Q ss_pred cccCcHHHHHHHHHHHHh------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 422 DLVGQNLVAQALSNAVMR------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
.|.||..+++.+.++++. .+.|.++-|+|++||||..++++||+.+....... .|+.......
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S--------~~V~~fvat~--- 151 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRS--------PFVHHFVATL--- 151 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccc--------hhHHHhhhhc---
Confidence 368999888888888875 34455788999999999999999999876542211 1111111000
Q ss_pred EEeCCCCCCCHHHHHH-HHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-------CCEEEEEEcCCCC
Q 036794 496 KEVGPVGNFDFESILD-LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-------RRVVFILVSSSLD 565 (1152)
Q Consensus 496 iEIdaas~~~vdeIre-Lle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-------~~VifILaTN~~d 565 (1152)
+-.....++.-++ +-..+...-....+.++|+||+|+|+++..++|-.+|+..+ ...+|||.+|.-.
T Consensus 152 ---hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg 226 (344)
T KOG2170|consen 152 ---HFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGG 226 (344)
T ss_pred ---cCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccccccccceEEEEEcCCcc
Confidence 0001111221111 11111111112456899999999999999999999998633 5789999998643
|
|
| >KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.6e-06 Score=98.73 Aligned_cols=121 Identities=27% Similarity=0.437 Sum_probs=76.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCC--CHHH-HHHHHHHHhhCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF--DFES-ILDLLDNMVTSRP 521 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~--~vde-IreLle~a~~~P~ 521 (1152)
.+||.||+|+|||.+|+.||+-++.+ +..|. |..+. .+++. +++. |..|+..+.+.-.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVP-------faIcD-cTtLT-----------QAGYVGeDVEsvi~KLl~~A~~nVe 288 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVP-------FAICD-CTTLT-----------QAGYVGEDVESVIQKLLQEAEYNVE 288 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCC-------eEEec-ccchh-----------hcccccccHHHHHHHHHHHccCCHH
Confidence 58999999999999999999998754 33443 33322 12222 2333 3334444433333
Q ss_pred CCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh-------------CCC--------CEEEEEEcCCCCc
Q 036794 522 PSQYRIFVFDDCDTLS--------------PDSWSAISKVVDR-------------APR--------RVVFILVSSSLDA 566 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls--------------~eaqnaLLklLEe-------------pp~--------~VifILaTN~~dk 566 (1152)
.++.+||||||+|++. ...|.+||++||. ++. ++.||+ ......
T Consensus 289 kAQqGIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFia-sGAF~~ 367 (564)
T KOG0745|consen 289 KAQQGIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIA-SGAFVG 367 (564)
T ss_pred HHhcCeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEe-cccccc
Confidence 4678999999999985 3468999999986 111 222332 223344
Q ss_pred chHHHHccceE--EEecCCCh
Q 036794 567 LPHIIISRCQK--FFFPKMKD 585 (1152)
Q Consensus 567 L~~aL~SR~qv--I~F~~p~~ 585 (1152)
|...|.+|... +-|..++.
T Consensus 368 Ldk~I~rR~~d~slGFg~~s~ 388 (564)
T KOG0745|consen 368 LDKIISRRLDDKSLGFGAPSS 388 (564)
T ss_pred hHHHHHHhhcchhcccCCCCC
Confidence 77777777763 66777655
|
|
| >PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals [] | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.5e-05 Score=88.28 Aligned_cols=186 Identities=15% Similarity=0.182 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cc-----eEEeC
Q 036794 427 NLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RN-----IKEVG 499 (1152)
Q Consensus 427 e~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~d-----viEId 499 (1152)
+..++.|.+.+.. ......+.|+|++|+|||++|..+++...... .+. +.+ ......... .. ...+.
T Consensus 2 e~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~-~f~---~v~--wv~~~~~~~~~~~~~~i~~~l~ 75 (287)
T PF00931_consen 2 EKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARDLRIKN-RFD---GVI--WVSLSKNPSLEQLLEQILRQLG 75 (287)
T ss_dssp HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCHHHHCC-CCT---EEE--EEEEES-SCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeeccccccccc-ccc---ccc--cccccccccccccccccccccc
Confidence 4567778888877 34456899999999999999999987733111 000 000 000000000 00 00000
Q ss_pred CC-----CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHcc
Q 036794 500 PV-----GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR 574 (1152)
Q Consensus 500 aa-----s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR 574 (1152)
.. ...+.+...+.+.... ..++.+||||+++... .+..|...+.....+..+|++|.+.. +...+...
T Consensus 76 ~~~~~~~~~~~~~~~~~~l~~~L----~~~~~LlVlDdv~~~~--~~~~l~~~~~~~~~~~kilvTTR~~~-v~~~~~~~ 148 (287)
T PF00931_consen 76 EPDSSISDPKDIEELQDQLRELL----KDKRCLLVLDDVWDEE--DLEELREPLPSFSSGSKILVTTRDRS-VAGSLGGT 148 (287)
T ss_dssp CC-STSSCCSSHHHHHHHHHHHH----CCTSEEEEEEEE-SHH--HH-------HCHHSS-EEEEEESCGG-GGTTHHSC
T ss_pred ccccccccccccccccccchhhh----ccccceeeeeeecccc--cccccccccccccccccccccccccc-cccccccc
Confidence 00 1122233333332221 1346799999987544 44455555544445788888887654 33333333
Q ss_pred ceEEEecCCChhHHHHHHHHHHHHcC---CCCCHHHHHHHHHhcCCCHHHHHHH
Q 036794 575 CQKFFFPKMKDADIIYTLQWIASKEG---IEIDKDALKLIASRSDGSLRDAEMT 625 (1152)
Q Consensus 575 ~qvI~F~~p~~~EI~eiL~~iakkeG---l~Id~dALelLAe~s~GDLR~Ain~ 625 (1152)
...+.+.+++.++..+++...+.... ..-.++.++.|++.++|.+-.+.-+
T Consensus 149 ~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLal~~~ 202 (287)
T PF00931_consen 149 DKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLALKLI 202 (287)
T ss_dssp EEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 67899999999999999988875443 1222456778899998866554333
|
This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A. |
| >PRK08116 hypothetical protein; Validated | Back alignment and domain information |
|---|
Probab=98.30 E-value=1.9e-06 Score=96.47 Aligned_cols=146 Identities=16% Similarity=0.188 Sum_probs=84.9
Q ss_pred hhhCCCCcCcccC---cHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 413 QKYMPRTFRDLVG---QNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 413 eKyRP~sFddLVG---Qe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+-.+|++++. +..++..+.+.+.. ...+.+++|+|++|||||++|.+|++++..... +
T Consensus 77 ~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~----~-------- 144 (268)
T PRK08116 77 EKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGV----P-------- 144 (268)
T ss_pred HHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCC----e--------
Confidence 4555567887753 33344444433332 223346999999999999999999999864311 1
Q ss_pred cccCCCccceEEeCCC----------CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCC--CCCHHHHHHHHHHHhh-CC
Q 036794 486 SHDRGKSRNIKEVGPV----------GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD--TLSPDSWSAISKVVDR-AP 552 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaa----------s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID--~Ls~eaqnaLLklLEe-pp 552 (1152)
+..++.. .........++++.+ ....+|||||++ ..+...+..|+.+|+. ..
T Consensus 145 ---------v~~~~~~~ll~~i~~~~~~~~~~~~~~~~~~l------~~~dlLviDDlg~e~~t~~~~~~l~~iin~r~~ 209 (268)
T PRK08116 145 ---------VIFVNFPQLLNRIKSTYKSSGKEDENEIIRSL------VNADLLILDDLGAERDTEWAREKVYNIIDSRYR 209 (268)
T ss_pred ---------EEEEEHHHHHHHHHHHHhccccccHHHHHHHh------cCCCEEEEecccCCCCCHHHHHHHHHHHHHHHH
Confidence 1111100 000001111223322 334799999995 4566677788888886 23
Q ss_pred CCEEEEEEcCCCC-c----chHHHHcc----ceEEEecCCCh
Q 036794 553 RRVVFILVSSSLD-A----LPHIIISR----CQKFFFPKMKD 585 (1152)
Q Consensus 553 ~~VifILaTN~~d-k----L~~aL~SR----~qvI~F~~p~~ 585 (1152)
....+|++||... . +...+.+| |..|.|...+-
T Consensus 210 ~~~~~IiTsN~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 210 KGLPTIVTTNLSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCCCEEEECCCCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 4456888888542 2 34456777 66677776553
|
|
| >PRK12377 putative replication protein; Provisional | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.8e-06 Score=94.18 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=73.0
Q ss_pred hhhCCCCcCccc----CcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 413 QKYMPRTFRDLV----GQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 413 eKyRP~sFddLV----GQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+...+|+.+. |+..++..+...+..- .....++|+||+|||||++|.+|++.+......
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~-------------- 131 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRS-------------- 131 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC--------------
Confidence 345556898886 3444555444443321 123468999999999999999999998643110
Q ss_pred cCCCccceEEeCCCCC--------CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhCC-CCEE
Q 036794 488 DRGKSRNIKEVGPVGN--------FDFESILDLLDNMVTSRPPSQYRIFVFDDCDT--LSPDSWSAISKVVDRAP-RRVV 556 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~--------~~vdeIreLle~a~~~P~~a~~kVVIIDEID~--Ls~eaqnaLLklLEepp-~~Vi 556 (1152)
+..+....- .......++++.+ ....||||||++. ++...+..|..+++..- ....
T Consensus 132 -------v~~i~~~~l~~~l~~~~~~~~~~~~~l~~l------~~~dLLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~p 198 (248)
T PRK12377 132 -------VIVVTVPDVMSRLHESYDNGQSGEKFLQEL------CKVDLLVLDEIGIQRETKNEQVVLNQIIDRRTASMRS 198 (248)
T ss_pred -------eEEEEHHHHHHHHHHHHhccchHHHHHHHh------cCCCEEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCC
Confidence 111110000 0000111233332 4558999999955 45667789999998733 3455
Q ss_pred EEEEcCC
Q 036794 557 FILVSSS 563 (1152)
Q Consensus 557 fILaTN~ 563 (1152)
+|++||.
T Consensus 199 tiitSNl 205 (248)
T PRK12377 199 VGMLTNL 205 (248)
T ss_pred EEEEcCC
Confidence 6778874
|
|
| >COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.3e-05 Score=84.29 Aligned_cols=207 Identities=14% Similarity=0.213 Sum_probs=114.2
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc-eE-EeCCCCCCCHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN-IK-EVGPVGNFDFE 507 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d-vi-EIdaas~~~vd 507 (1152)
++++.......+.| +||.||.|.||+.+|+-|-..-.... ....++ ...+|........+. ++ .+.. .-.+..
T Consensus 197 ieqierva~rsr~p--~ll~gptgagksflarriyelk~arh-q~sg~f-vevncatlrgd~amsalfghvkg-aftga~ 271 (531)
T COG4650 197 IEQIERVAIRSRAP--ILLNGPTGAGKSFLARRIYELKQARH-QFSGAF-VEVNCATLRGDTAMSALFGHVKG-AFTGAR 271 (531)
T ss_pred HHHHHHHHhhccCC--eEeecCCCcchhHHHHHHHHHHHHHH-hcCCce-EEEeeeeecCchHHHHHHhhhcc-ccccch
Confidence 34444333334444 89999999999999998854211110 111111 112233221111100 00 0000 001111
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---C--------CCEEEEEEcC-C------CCcchH
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---P--------RRVVFILVSS-S------LDALPH 569 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---p--------~~VifILaTN-~------~dkL~~ 569 (1152)
.-+ +.+ -..++++++|+|||+.|..+.+..||+.+|+. | .+.-+|.-|- + ...+.+
T Consensus 272 ~~r---~gl---lrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fre 345 (531)
T COG4650 272 ESR---EGL---LRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFRE 345 (531)
T ss_pred hhh---hhh---hccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHH
Confidence 111 111 11267789999999999999999999999982 1 2233343332 1 124666
Q ss_pred HHHccceEEEecCCChhHHHH--------HHHHHHHHcC--CCCCHHHHHHHHH-------hcCCCHHHHHHHHHHHHHh
Q 036794 570 IIISRCQKFFFPKMKDADIIY--------TLQWIASKEG--IEIDKDALKLIAS-------RSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~e--------iL~~iakkeG--l~Id~dALelLAe-------~s~GDLR~Ain~LEkLsLl 632 (1152)
.|..|.....|..|...+..+ -|...+...| +.+..+|-..-.. .|.||.|++-.-+-+++.+
T Consensus 346 dl~arinlwtf~lpgl~qr~ediepnldyelerha~~~g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatl 425 (531)
T COG4650 346 DLYARINLWTFTLPGLRQRQEDIEPNLDYELERHASLTGDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATL 425 (531)
T ss_pred HHHHhhheeeeeccccccCccccCCCccHHHHHHHHhhCceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHH
Confidence 788888877776664433222 3444454444 3455555433222 2789999999999888766
Q ss_pred --CCCCCHHHHHHHHhc
Q 036794 633 --GQRISVPLVQELVGL 647 (1152)
Q Consensus 633 --g~~IT~EdV~elVg~ 647 (1152)
+++||.+.|++-+..
T Consensus 426 ad~grit~~~ve~ei~r 442 (531)
T COG4650 426 ADSGRITLDVVEDEINR 442 (531)
T ss_pred hcCCceeHHHHHHHHHH
Confidence 568999888776543
|
|
| >PF13173 AAA_14: AAA domain | Back alignment and domain information |
|---|
Probab=98.25 E-value=5.1e-06 Score=82.35 Aligned_cols=120 Identities=21% Similarity=0.231 Sum_probs=72.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH-HHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES-ILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde-IreLle~a~~~P~~ 522 (1152)
.+++|+||+|+|||++++.+++.+... . .+..++-........ ..++.+.+... ..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~---~-------------------~~~yi~~~~~~~~~~~~~~~~~~~~~~-~~ 59 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPP---E-------------------NILYINFDDPRDRRLADPDLLEYFLEL-IK 59 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhccc---c-------------------cceeeccCCHHHHHHhhhhhHHHHHHh-hc
Confidence 468999999999999999999886610 0 022222111000000 00011222111 11
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc----chHHHHccceEEEecCCChhHH
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA----LPHIIISRCQKFFFPKMKDADI 588 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk----L~~aL~SR~qvI~F~~p~~~EI 588 (1152)
.+..+|||||++.++ +.+..+..+++.. .++.||+++..... ....+..|...+.+.|++-.|+
T Consensus 60 ~~~~~i~iDEiq~~~-~~~~~lk~l~d~~-~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 60 PGKKYIFIDEIQYLP-DWEDALKFLVDNG-PNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred cCCcEEEEehhhhhc-cHHHHHHHHHHhc-cCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 256899999999986 4555555555553 57788888765443 3445777888899999887664
|
|
| >KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.1e-05 Score=96.49 Aligned_cols=181 Identities=20% Similarity=0.303 Sum_probs=116.9
Q ss_pred CcCcccCcHHHHHHHHHHHHhC--------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR--------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g--------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
+|-..-+++..+..+.+.+.-. .....+||+|+||+|||++.+++|++++....+. .|..+...
T Consensus 399 n~~~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~ev--------dc~el~~~ 470 (953)
T KOG0736|consen 399 NSLSPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEV--------DCYELVAE 470 (953)
T ss_pred ccCCCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHhCCceEec--------cHHHHhhc
Confidence 3444556666555555555432 3446899999999999999999999998764332 23333221
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------HHHHHHHHHh--h---CCCCEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------SWSAISKVVD--R---APRRVVF 557 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------aqnaLLklLE--e---pp~~Vif 557 (1152)
.. ...-......+..+... ...||||-.+|-+.-+ .+..+...+. . ....++|
T Consensus 471 s~----------~~~etkl~~~f~~a~~~----~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~iv 536 (953)
T KOG0736|consen 471 SA----------SHTETKLQAIFSRARRC----SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIV 536 (953)
T ss_pred cc----------chhHHHHHHHHHHHhhc----CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEE
Confidence 11 11122344455555443 3468888877766321 1222222222 1 3468999
Q ss_pred EEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHH
Q 036794 558 ILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ai 623 (1152)
|.+|+..+.+|+.+++-+. .|.++.++++++.++|+++..... ++.+ .++.++.++.| ..+++.
T Consensus 537 v~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~--~n~~v~~k~~a~~t~gfs~~~L~ 603 (953)
T KOG0736|consen 537 VATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP--LNQDVNLKQLARKTSGFSFGDLE 603 (953)
T ss_pred EEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc--cchHHHHHHHHHhcCCCCHHHHH
Confidence 9999999999999998876 599999999999999999987655 4433 46667777665 444443
|
|
| >KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.23 E-value=1.1e-05 Score=97.80 Aligned_cols=159 Identities=17% Similarity=0.193 Sum_probs=98.3
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCC-----------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVG-----------LLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~-----------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
.|..|.+-..| +|.|++.++..|.-++-.|... -.+||+|.||||||.+.+.+++.+.......
T Consensus 419 iy~lLa~SiAP----sIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTS- 493 (804)
T KOG0478|consen 419 IYELLARSIAP----SIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTS- 493 (804)
T ss_pred HHHHHHHhhch----hhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeec-
Confidence 34555555543 5778888888887766553221 2699999999999999999998865442211
Q ss_pred CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR----- 550 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe----- 550 (1152)
|.......+.+.-..+. +-++++-+. ..-..++.++-.|||+|+|+....+.|+.+||.
T Consensus 494 --------------GkGsSavGLTayVtrd~-dtkqlVLes-GALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSI 557 (804)
T KOG0478|consen 494 --------------GKGSSAVGLTAYVTKDP-DTRQLVLES-GALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSI 557 (804)
T ss_pred --------------CCccchhcceeeEEecC-ccceeeeec-CcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhH
Confidence 11100010000000000 011111110 011226778999999999999999999999997
Q ss_pred --------CCCCEEEEEEcCC------CC-------cchHHHHccceE--EEecCCChh
Q 036794 551 --------APRRVVFILVSSS------LD-------ALPHIIISRCQK--FFFPKMKDA 586 (1152)
Q Consensus 551 --------pp~~VifILaTN~------~d-------kL~~aL~SR~qv--I~F~~p~~~ 586 (1152)
.+..+-+|+++|- +. .||++|++||.. +-|.++++.
T Consensus 558 AKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 558 AKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred hhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEecCcchh
Confidence 3456667888772 21 389999999995 345666554
|
|
| >PRK07952 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=98.22 E-value=6.3e-06 Score=91.19 Aligned_cols=144 Identities=18% Similarity=0.160 Sum_probs=83.2
Q ss_pred hhhhCCCCcCccc----CcHHHHHHHHHHHHhCC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 412 TQKYMPRTFRDLV----GQNLVAQALSNAVMRRK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 412 ~eKyRP~sFddLV----GQe~v~q~Lk~aL~~gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+.|++.+|+++. ++..++..+...+..-. ....++|+|++|||||++|.+|++++..... .
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~----~--------- 129 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGK----S--------- 129 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCC----e---------
Confidence 4567778999976 33445566665554321 1236899999999999999999999864311 0
Q ss_pred ccCCCccceEEeCCCCC---------CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCC
Q 036794 487 HDRGKSRNIKEVGPVGN---------FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRR 554 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~---------~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~ 554 (1152)
+..+....- ..-....++++.+ ....+|||||++..... ....|..+++. ....
T Consensus 130 --------v~~it~~~l~~~l~~~~~~~~~~~~~~l~~l------~~~dlLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~ 195 (244)
T PRK07952 130 --------VLIITVADIMSAMKDTFSNSETSEEQLLNDL------SNVDLLVIDEIGVQTESRYEKVIINQIVDRRSSSK 195 (244)
T ss_pred --------EEEEEHHHHHHHHHHHHhhccccHHHHHHHh------ccCCEEEEeCCCCCCCCHHHHHHHHHHHHHHHhCC
Confidence 111110000 0000112233332 34579999999887543 33467778876 3335
Q ss_pred EEEEEEcCCCC-----cchHHHHccc-----eEEEecC
Q 036794 555 VVFILVSSSLD-----ALPHIIISRC-----QKFFFPK 582 (1152)
Q Consensus 555 VifILaTN~~d-----kL~~aL~SR~-----qvI~F~~ 582 (1152)
..+|++||... .+...+.+|+ ..+.|.-
T Consensus 196 ~~tiitSNl~~~~l~~~~g~ri~sRl~~~~~~~i~f~~ 233 (244)
T PRK07952 196 RPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNW 233 (244)
T ss_pred CCEEEeCCCCHHHHHHHhChHHHHHHHHCCceEEEeeC
Confidence 66778887532 2334455554 2566654
|
|
| >PRK13406 bchD magnesium chelatase subunit D; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.6e-05 Score=92.44 Aligned_cols=204 Identities=13% Similarity=0.094 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCC
Q 036794 426 QNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF 504 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~ 504 (1152)
|+.++..|.-..... .++ ++||.|+.||+|+++++.++..+....+...-|- +...+ .-+
T Consensus 8 ~~~~~~Al~l~av~p~~~g-Gv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~-----------~~t~~-------~L~ 68 (584)
T PRK13406 8 WADAALAAALLAVDPAGLG-GVVLRARAGPVRDRWLAALRALLPAGTPLRRLPP-----------GIADD-------RLL 68 (584)
T ss_pred HHHHHHHHHHhCcCccccc-eEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCC-----------CCcHH-------Hcc
Confidence 556665554333333 443 6899999999999999999988754211000000 00000 001
Q ss_pred CHHHHHHHHHHHh--hCC---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCCEEEEEEcC---C
Q 036794 505 DFESILDLLDNMV--TSR---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRRVVFILVSS---S 563 (1152)
Q Consensus 505 ~vdeIreLle~a~--~~P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~VifILaTN---~ 563 (1152)
+--++...+..-. ..| ..+.++||||||+..+.+..++.|+..|++. |.+..+|++-| +
T Consensus 69 Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~ 148 (584)
T PRK13406 69 GGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEE 148 (584)
T ss_pred CCchHHhHhhcCCcCCCCCceeeccCCEEEecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhc
Confidence 1111111221111 011 1256789999999999999999999999982 34444444312 1
Q ss_pred CCcchHHHHccceE-EEecCCChhHHH-------HHHHHHHHHcCCCCCHHHHHHHHHh---cCC-CHHHHHHHHHHH--
Q 036794 564 LDALPHIIISRCQK-FFFPKMKDADII-------YTLQWIASKEGIEIDKDALKLIASR---SDG-SLRDAEMTLEQL-- 629 (1152)
Q Consensus 564 ~dkL~~aL~SR~qv-I~F~~p~~~EI~-------eiL~~iakkeGl~Id~dALelLAe~---s~G-DLR~Ain~LEkL-- 629 (1152)
...+++.++.||.. +.+..++..+.. .++.....-.++.++++.+++++.. .+- ++|..+.++.-+
T Consensus 149 ~~~L~~~lLDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa 228 (584)
T PRK13406 149 DERAPAALADRLAFHLDLDGLALRDAREIPIDADDIAAARARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARA 228 (584)
T ss_pred ccCCCHHhHhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 23599999999984 777776654332 1222222224788999999988775 222 567666666554
Q ss_pred -HHhCC--CCCHHHHHHHHhcc
Q 036794 630 -SLLGQ--RISVPLVQELVGLI 648 (1152)
Q Consensus 630 -sLlg~--~IT~EdV~elVg~v 648 (1152)
+.+.+ .|+.+||.+++..+
T Consensus 229 ~AaL~Gr~~V~~~dv~~Aa~lv 250 (584)
T PRK13406 229 AAALAGRTAVEEEDLALAARLV 250 (584)
T ss_pred HHHHcCCCCCCHHHHHHHHHHH
Confidence 34433 59999998887554
|
|
| >PRK15455 PrkA family serine protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00011 Score=89.34 Aligned_cols=162 Identities=12% Similarity=0.083 Sum_probs=93.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEEcCCC-------CcchHHHHccceEEEecCCC-
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILVSSSL-------DALPHIIISRCQKFFFPKMK- 584 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILaTN~~-------dkL~~aL~SR~qvI~F~~p~- 584 (1152)
.++++=+=|+-+.+.+....||.+.++ .+-+.+||..||+. ++-.++|+.|+.+|.+|-.-
T Consensus 255 NrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E~~~F~~nk~nEA~~DRi~~V~VPY~lr 334 (644)
T PRK15455 255 NQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESEWQTFRNNKNNEAFLDRIYIVKVPYCLR 334 (644)
T ss_pred cCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHHHHHHhcCccchhhhceEEEEeCCccCC
Confidence 345555557777777777777777766 22355677777754 35677899999998877543
Q ss_pred hhHHHHHHHHHHHH---cCCCCCHHHHHHHHHhc-------CCCHHHHHHHHHHHHHhCCC-C-----CHHHHHHHHhcc
Q 036794 585 DADIIYTLQWIASK---EGIEIDKDALKLIASRS-------DGSLRDAEMTLEQLSLLGQR-I-----SVPLVQELVGLI 648 (1152)
Q Consensus 585 ~~EI~eiL~~iakk---eGl~Id~dALelLAe~s-------~GDLR~Ain~LEkLsLlg~~-I-----T~EdV~elVg~v 648 (1152)
..+=.++-++..+. .+..+.|.+++.+|..+ +-+ .+.++++-+|++. + +..+++++-...
T Consensus 335 ~~eE~kIYeKll~~s~l~~~hiAPhtle~aA~faVLTRL~~p~~----~~l~~KmklYdGe~~~~~~~~~~~~~E~rd~a 410 (644)
T PRK15455 335 VSEEIKIYEKLLRNSELAHAPCAPGTLEMLARFSVLSRLKEPEN----SSIYSKMRVYDGESLKDTDPKAKSYQEYRDYA 410 (644)
T ss_pred hhHHHHHHHHHhcCccccCCCcCccHHHHHHHHHHHhcCCCCCc----CCHHHHHHhhcccccccCCCCcccHHHHHhhc
Confidence 23333444555544 35678888888777661 122 4588999888542 3 334444443211
Q ss_pred chhhHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCChHHHHHHHHHHHHH
Q 036794 649 SDEKLVDLLDLALSADTVNTVKNLRVIMET-----GVEPLALMSQLATVITD 695 (1152)
Q Consensus 649 ~ee~ifdLldAils~d~~~ALk~L~~LL~~-----G~dPl~ILs~La~qiRd 695 (1152)
..+ +.+..-++.-+.+.|...+.. ..+|+.++..|-..+..
T Consensus 411 ~~~------EGm~GiS~Rf~~~~ls~a~~~~~~~~~~nP~~~l~~Le~~i~~ 456 (644)
T PRK15455 411 GVD------EGMNGLSTRFAFKILSRVFNFDHTEVAANPVHLMYVLEQQIER 456 (644)
T ss_pred CCC------CCCCCCCHHHHHHHHHHHHccCcccccCCHHHHHHHHHHHHhh
Confidence 110 011111344444555554444 45777777777665543
|
|
| >COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00017 Score=79.67 Aligned_cols=188 Identities=20% Similarity=0.236 Sum_probs=115.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc---------cceE
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS---------RNIK 496 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~---------~dvi 496 (1152)
+..++..+..++..++. .+.++|+-|+|||.+.|++...++.... |. +.+..-.. ....
T Consensus 36 h~e~l~~l~~~i~d~qg--~~~vtGevGsGKTv~~Ral~~s~~~d~~-----~~-----v~i~~~~~s~~~~~~ai~~~l 103 (269)
T COG3267 36 HNEALLMLHAAIADGQG--ILAVTGEVGSGKTVLRRALLASLNEDQV-----AV-----VVIDKPTLSDATLLEAIVADL 103 (269)
T ss_pred hhHHHHHHHHHHhcCCc--eEEEEecCCCchhHHHHHHHHhcCCCce-----EE-----EEecCcchhHHHHHHHHHHHh
Confidence 45777888888887764 3689999999999999977777663311 11 00000000 0000
Q ss_pred EeCCCCCCC--HHHHHHHHHHHhhCCCCCCc-eEEEEeCCCCCCHHHHHHHHHHHhh---CCCCEEEEEEcC-CCC---c
Q 036794 497 EVGPVGNFD--FESILDLLDNMVTSRPPSQY-RIFVFDDCDTLSPDSWSAISKVVDR---APRRVVFILVSS-SLD---A 566 (1152)
Q Consensus 497 EIdaas~~~--vdeIreLle~a~~~P~~a~~-kVVIIDEID~Ls~eaqnaLLklLEe---pp~~VifILaTN-~~d---k 566 (1152)
+.++..... ...+...+..+.. .+++ .++++||++.+..++.+.|..+.+- ......++++.- ... +
T Consensus 104 ~~~p~~~~~~~~e~~~~~L~al~~---~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr 180 (269)
T COG3267 104 ESQPKVNVNAVLEQIDRELAALVK---KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLR 180 (269)
T ss_pred ccCccchhHHHHHHHHHHHHHHHH---hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhc
Confidence 111111110 1122222222211 2444 7899999999999988877666543 333334444432 111 1
Q ss_pred --chHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCC---CCHHHHHHHHHhcCCCHHHHHHHHHH
Q 036794 567 --LPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIE---IDKDALKLIASRSDGSLRDAEMTLEQ 628 (1152)
Q Consensus 567 --L~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~---Id~dALelLAe~s~GDLR~Ain~LEk 628 (1152)
....+..|+.+ |..+|++.++...+|++.++..+.. ++++++..+...+.|-.+..-+...+
T Consensus 181 ~~~l~e~~~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 181 LPVLRELEQRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred hHHHHhhhheEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhccchHHHHHHHHH
Confidence 12247788887 9999999999999999999876654 78999999999999966655444444
|
|
| >COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00012 Score=90.82 Aligned_cols=144 Identities=17% Similarity=0.199 Sum_probs=88.9
Q ss_pred cCcccCcHHHHHHHHHHHHhCCC-----------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKV-----------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri-----------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
+-.|.|++.++..|.-++-.|-. .-++||.|.|||||+.+.+.+++.+-...... +.........
T Consensus 285 aPsIyG~e~VKkAilLqLfgGv~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vyts----gkgss~~GLT 360 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGGVKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTS----GKGSSAAGLT 360 (682)
T ss_pred cccccCcHHHHHHHHHHhcCCCcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEc----cccccccCce
Confidence 45788999999888877655311 13699999999999999999987754332111 1111111111
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCE
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRV 555 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~V 555 (1152)
..... ++. ++ + -.++. ..-..++++|+.|||+|+|......+|...||. .+..+
T Consensus 361 Aav~r-----d~~--tg-e---~~Lea--GALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARc 427 (682)
T COG1241 361 AAVVR-----DKV--TG-E---WVLEA--GALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARC 427 (682)
T ss_pred eEEEE-----ccC--CC-e---EEEeC--CEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhh
Confidence 10000 000 00 0 00000 001126779999999999999999999999998 23455
Q ss_pred EEEEEcCCCC-------------cchHHHHccceEEEe
Q 036794 556 VFILVSSSLD-------------ALPHIIISRCQKFFF 580 (1152)
Q Consensus 556 ifILaTN~~d-------------kL~~aL~SR~qvI~F 580 (1152)
-+++|+|-.. .++++|+||+..|.+
T Consensus 428 svLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifv 465 (682)
T COG1241 428 SVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFV 465 (682)
T ss_pred hhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEE
Confidence 5666776321 388899999996543
|
|
| >PRK06526 transposase; Provisional | Back alignment and domain information |
|---|
Probab=98.01 E-value=3e-05 Score=86.35 Aligned_cols=101 Identities=18% Similarity=0.241 Sum_probs=56.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS 523 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a 523 (1152)
..++|+||+|||||++|.+|+.++...... + .+..+..+.. .+..... ...+...+..+ .
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~----v-~f~t~~~l~~-------~l~~~~~--~~~~~~~l~~l------~ 158 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR----V-LFATAAQWVA-------RLAAAHH--AGRLQAELVKL------G 158 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc----h-hhhhHHHHHH-------HHHHHHh--cCcHHHHHHHh------c
Confidence 468999999999999999999876432110 0 0000000000 0000000 00111222222 3
Q ss_pred CceEEEEeCCCCCC--HHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 524 QYRIFVFDDCDTLS--PDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls--~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+..+|||||++.+. ....+.|..+++....+..+|++||.+
T Consensus 159 ~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~ 201 (254)
T PRK06526 159 RYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKP 201 (254)
T ss_pred cCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCC
Confidence 45799999999874 556677888887633334578888754
|
|
| >PF05729 NACHT: NACHT domain | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.3e-05 Score=76.85 Aligned_cols=150 Identities=18% Similarity=0.213 Sum_probs=78.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCC-CCCCCCccccccCCCcc-ceEE-eCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPK-PCGFCNSCISHDRGKSR-NIKE-VGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e-pcg~c~~c~~i~~g~~~-dviE-Idaas~~~vdeIreLle~a~~~P~ 521 (1152)
.++|+|++|+|||++++.++..+......... ++.+...+......... .+.. +..........+...+..+..
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~--- 78 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLE--- 78 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHH---
Confidence 58999999999999999999887655422210 11111111111110000 0000 000000000111111111111
Q ss_pred CCCceEEEEeCCCCCCHHHH--------HHHHHHHhh-CCCCEEEEEEcCCCCc-chHHHHccceEEEecCCChhHHHHH
Q 036794 522 PSQYRIFVFDDCDTLSPDSW--------SAISKVVDR-APRRVVFILVSSSLDA-LPHIIISRCQKFFFPKMKDADIIYT 591 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~eaq--------naLLklLEe-pp~~VifILaTN~~dk-L~~aL~SR~qvI~F~~p~~~EI~ei 591 (1152)
....-+||||.+|.+..... ..|..++.. .+.++.+|+++..... -..........+.+.+++.+++..+
T Consensus 79 ~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 158 (166)
T PF05729_consen 79 KNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQAQILELEPFSEEDIKQY 158 (166)
T ss_pred cCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCCcEEEECCCCHHHHHHH
Confidence 24456899999999876332 244455555 4567777777754331 1222333335788999999999999
Q ss_pred HHHHHH
Q 036794 592 LQWIAS 597 (1152)
Q Consensus 592 L~~iak 597 (1152)
++..++
T Consensus 159 ~~~~f~ 164 (166)
T PF05729_consen 159 LRKYFS 164 (166)
T ss_pred HHHHhh
Confidence 987764
|
|
| >PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B | Back alignment and domain information |
|---|
Probab=97.93 E-value=2.5e-05 Score=76.33 Aligned_cols=111 Identities=22% Similarity=0.369 Sum_probs=55.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC-CCCCCCCccccccCCCccceE-----EeC--CCCCCCHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQP-KPCGFCNSCISHDRGKSRNIK-----EVG--PVGNFDFESILDLLDN 515 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~-epcg~c~~c~~i~~g~~~dvi-----EId--aas~~~vdeIreLle~ 515 (1152)
..++++||+|+|||++++.+++.+........ .++.+ ..|.... ...++. .+. .......+.+.+.+..
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~ 81 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIY-VNCPSSR--TPRDFAQEILEALGLPLKSRQTSDELRSLLID 81 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEE-EEHHHHS--SHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEE-EEeCCCC--CHHHHHHHHHHHhCccccccCCHHHHHHHHHH
Confidence 45899999999999999999998753210000 00000 0000000 000000 000 0011122332222222
Q ss_pred -HhhCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 516 -MVTSRPPSQYRIFVFDDCDTL-SPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 516 -a~~~P~~a~~kVVIIDEID~L-s~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
+... ...+|+|||+|.+ ..+.++.|..+++ ..++.||++++.
T Consensus 82 ~l~~~----~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 82 ALDRR----RVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHHHC----TEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HHHhc----CCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 2211 1259999999999 8888888887777 466777776643
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0013 Score=84.40 Aligned_cols=200 Identities=15% Similarity=0.144 Sum_probs=112.2
Q ss_pred CCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC-----CCCCCCCCC-Cccccc---
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL-----EQPKPCGFC-NSCISH--- 487 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~-----e~~epcg~c-~~c~~i--- 487 (1152)
|..-.++|-.+.+.+.|. .....+.++++||+|+|||+++..++.....-.+ ..+.|-.++ ..|..+
T Consensus 10 p~~~~~~~~R~rl~~~l~----~~~~~~~~~v~apaG~GKTtl~~~~~~~~~~~~w~~l~~~d~~~~~f~~~l~~~l~~~ 85 (903)
T PRK04841 10 PVRLHNTVVRERLLAKLS----GANNYRLVLVTSPAGYGKTTLISQWAAGKNNLGWYSLDESDNQPERFASYLIAALQQA 85 (903)
T ss_pred CCCccccCcchHHHHHHh----cccCCCeEEEECCCCCCHHHHHHHHHHhCCCeEEEecCcccCCHHHHHHHHHHHHHHh
Confidence 444567777777766664 3344567899999999999999998764321000 000110000 000000
Q ss_pred cCCCccceEEeC-CCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVG-PVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEId-aas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+.......+. ....... ..+..++..+.. ....-+||||++|.+.... ...|..++...+.++.+|+++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~sR~~ 162 (903)
T PRK04841 86 TNGHCSKSEALAQKRQYASLSSLFAQLFIELAD---WHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVLSRNL 162 (903)
T ss_pred cCcccchhhhhhccCCcCCHHHHHHHHHHHHhc---CCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEEeCCC
Confidence 000000000000 0000111 122334443322 1445789999999997554 446666777778888888887653
Q ss_pred Ccch-HHHHccce--EEEec--CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Q 036794 565 DALP-HIIISRCQ--KFFFP--KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 565 dkL~-~aL~SR~q--vI~F~--~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~L 626 (1152)
..++ ..+.-+.. .+... +++.+|...++... .|..++++.+..|.+.++|++.-+.-.+
T Consensus 163 ~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~---~~~~~~~~~~~~l~~~t~Gwp~~l~l~~ 226 (903)
T PRK04841 163 PPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQR---LSSPIEAAESSRLCDDVEGWATALQLIA 226 (903)
T ss_pred CCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhc---cCCCCCHHHHHHHHHHhCChHHHHHHHH
Confidence 2232 22332333 34333 78889988877543 4678999999999999999987654333
|
|
| >PRK08181 transposase; Validated | Back alignment and domain information |
|---|
Probab=97.89 E-value=8.4e-05 Score=83.49 Aligned_cols=100 Identities=12% Similarity=0.196 Sum_probs=58.6
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC-------CCHH
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN-------FDFE 507 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~-------~~vd 507 (1152)
.++..+ ..++|+||+|||||++|.+++.++...... +..+....- ....
T Consensus 101 ~~~~~~---~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~---------------------v~f~~~~~L~~~l~~a~~~~ 156 (269)
T PRK08181 101 SWLAKG---ANLLLFGPPGGGKSHLAAAIGLALIENGWR---------------------VLFTRTTDLVQKLQVARREL 156 (269)
T ss_pred HHHhcC---ceEEEEecCCCcHHHHHHHHHHHHHHcCCc---------------------eeeeeHHHHHHHHHHHHhCC
Confidence 455533 358999999999999999999887532110 111110000 0000
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....++..+ ....+|||||++.+.. .....|+.+++......-+|++||.+
T Consensus 157 ~~~~~l~~l------~~~dLLIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~~ 209 (269)
T PRK08181 157 QLESAIAKL------DKFDLLILDDLAYVTKDQAETSVLFELISARYERRSILITANQP 209 (269)
T ss_pred cHHHHHHHH------hcCCEEEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCCC
Confidence 111222222 3457999999998754 34567888887633334678888753
|
|
| >KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00081 Score=79.70 Aligned_cols=216 Identities=16% Similarity=0.200 Sum_probs=126.9
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC-----------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV-----------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri-----------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epc 478 (1152)
.+++|....---+|.|++++++.|.-.+-.|-. .-.++|.|.||+-|+.+.+.+.+-.-......+
T Consensus 331 d~yekLa~SiAPEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTG--- 407 (721)
T KOG0482|consen 331 DFYEKLAASIAPEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTG--- 407 (721)
T ss_pred cHHHHHHHhhchhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecC---
Confidence 345555433345789999999999888866421 126899999999999999999776433221111
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHH-HHHh---hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL-DNMV---TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--- 551 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl-e~a~---~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep--- 551 (1152)
.|++ ++ .+.++ -+++-+ .++. ..-..++.+|-.|||+|+|....-.++-.+||..
T Consensus 408 ----------rGSS-GV-GLTAA------VmkDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTIS 469 (721)
T KOG0482|consen 408 ----------RGSS-GV-GLTAA------VMKDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTIS 469 (721)
T ss_pred ----------CCCC-cc-ccchh------hhcCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhh
Confidence 0000 00 00000 000000 0000 0011256789999999999988888888888872
Q ss_pred ----------CCCEEEEEEcCC------CC-------cchHHHHccceE-------------------------------
Q 036794 552 ----------PRRVVFILVSSS------LD-------ALPHIIISRCQK------------------------------- 577 (1152)
Q Consensus 552 ----------p~~VifILaTN~------~d-------kL~~aL~SR~qv------------------------------- 577 (1152)
..++.++.++|- +. .||.+|+|||..
T Consensus 470 IaKAGI~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH~H~~qp~ 549 (721)
T KOG0482|consen 470 IAKAGINTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVHQHEEQPP 549 (721)
T ss_pred hhhhccccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhhccCCCCC
Confidence 245556666652 11 489999999762
Q ss_pred EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------------cCCCHHHHHHHHHHHHHh-----CCCCCH
Q 036794 578 FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------------SDGSLRDAEMTLEQLSLL-----GQRISV 638 (1152)
Q Consensus 578 I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------------s~GDLR~Ain~LEkLsLl-----g~~IT~ 638 (1152)
..|.+++.+-+..+|. .|+...-.++++..++|... +--..|.++.+|.-...+ ...+..
T Consensus 550 ~~fepl~~~~mR~yI~-~ak~~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~ 628 (721)
T KOG0482|consen 550 LDFEPLDPNLMRRYIS-LAKRKNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEE 628 (721)
T ss_pred ccCCCCCHHHHHHHHH-HHhhcCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccch
Confidence 2355555555555553 34445555677776666544 123567777776543222 446788
Q ss_pred HHHHHHHhc
Q 036794 639 PLVQELVGL 647 (1152)
Q Consensus 639 EdV~elVg~ 647 (1152)
+||.+++..
T Consensus 629 ~DV~EALRL 637 (721)
T KOG0482|consen 629 DDVNEALRL 637 (721)
T ss_pred hhHHHHHHH
Confidence 888888753
|
|
| >PRK06921 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.87 E-value=5.9e-05 Score=84.53 Aligned_cols=27 Identities=26% Similarity=0.212 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
...++|+||+|+|||++|.+|++++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~ 143 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMR 143 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhh
Confidence 457899999999999999999998753
|
|
| >KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00021 Score=85.00 Aligned_cols=153 Identities=20% Similarity=0.301 Sum_probs=89.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC------CCHHHHHHHHHHHhh
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN------FDFESILDLLDNMVT 518 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~------~~vdeIreLle~a~~ 518 (1152)
.+||.||+|+|||++|-.+|.....++ +..+.+..- .....+...++.+..
T Consensus 540 SvLl~Gp~~sGKTaLAA~iA~~S~FPF-----------------------vKiiSpe~miG~sEsaKc~~i~k~F~DAYk 596 (744)
T KOG0741|consen 540 SVLLEGPPGSGKTALAAKIALSSDFPF-----------------------VKIISPEDMIGLSESAKCAHIKKIFEDAYK 596 (744)
T ss_pred EEEEecCCCCChHHHHHHHHhhcCCCe-----------------------EEEeChHHccCccHHHHHHHHHHHHHHhhc
Confidence 699999999999999999988755442 222222221 234567778888766
Q ss_pred CCCCCCceEEEEeCCCCCC----------HHHHHHHHHHHhhCCC--CEEEEEEcCCCCcchHH--HHccce-EEEecCC
Q 036794 519 SRPPSQYRIFVFDDCDTLS----------PDSWSAISKVVDRAPR--RVVFILVSSSLDALPHI--IISRCQ-KFFFPKM 583 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls----------~eaqnaLLklLEepp~--~VifILaTN~~dkL~~a--L~SR~q-vI~F~~p 583 (1152)
.|. .||+||+++.|- .-...+|+-+|...|+ +-.||++|+....+... +..-+. .+.++.+
T Consensus 597 S~l----siivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl 672 (744)
T KOG0741|consen 597 SPL----SIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNL 672 (744)
T ss_pred Ccc----eEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCcc
Confidence 665 799999998872 2345566666766443 46677777653322221 333333 4777777
Q ss_pred Ch-hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 036794 584 KD-ADIIYTLQWIASKEGIEIDKDALKLIASRSDG-----SLRDAEMTLEQL 629 (1152)
Q Consensus 584 ~~-~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-----DLR~Ain~LEkL 629 (1152)
+. +++.+.|. ..++ +.++..+.++..--+ .+..++.++|.+
T Consensus 673 ~~~~~~~~vl~----~~n~-fsd~~~~~~~~~~~~~~~~vgIKklL~lie~a 719 (744)
T KOG0741|consen 673 TTGEQLLEVLE----ELNI-FSDDEVRAIAEQLLSKKVNVGIKKLLMLIEMA 719 (744)
T ss_pred CchHHHHHHHH----HccC-CCcchhHHHHHHHhccccchhHHHHHHHHHHH
Confidence 65 55555443 2232 445555554444211 244455555443
|
|
| >PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.001 Score=73.39 Aligned_cols=139 Identities=22% Similarity=0.245 Sum_probs=84.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde 508 (1152)
....|..++... ..-.++||.|||||++++.+|+.++.. ++.++-....+...
T Consensus 21 ~~~~l~~al~~~---~~~~~~GpagtGKtetik~La~~lG~~------------------------~~vfnc~~~~~~~~ 73 (231)
T PF12774_consen 21 CFLTLTQALSLN---LGGALSGPAGTGKTETIKDLARALGRF------------------------VVVFNCSEQMDYQS 73 (231)
T ss_dssp HHHHHHHHHCTT---TEEEEESSTTSSHHHHHHHHHHCTT--------------------------EEEEETTSSS-HHH
T ss_pred HHHHHHHHhccC---CCCCCcCCCCCCchhHHHHHHHHhCCe------------------------EEEecccccccHHH
Confidence 344555555432 334689999999999999999998865 33333334577788
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------------------CCCCEEEEEEcC----CC
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------------------APRRVVFILVSS----SL 564 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------------------pp~~VifILaTN----~~ 564 (1152)
+..++..+... +..+.+||++.|+.+....+-+.+.. ..+++.+.++.| ..
T Consensus 74 l~ril~G~~~~-----GaW~cfdefnrl~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr 148 (231)
T PF12774_consen 74 LSRILKGLAQS-----GAWLCFDEFNRLSEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGR 148 (231)
T ss_dssp HHHHHHHHHHH-----T-EEEEETCCCSSHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC
T ss_pred HHHHHHHHhhc-----CchhhhhhhhhhhHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccCCc
Confidence 88888876543 36899999999998876655444332 112333444444 12
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCC
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~ 602 (1152)
..+|+.|+.-+..+.+..|+...|.+.+ +-..|..
T Consensus 149 ~~LP~nLk~lFRpvam~~PD~~~I~ei~---L~s~GF~ 183 (231)
T PF12774_consen 149 SELPENLKALFRPVAMMVPDLSLIAEIL---LLSQGFK 183 (231)
T ss_dssp --S-HHHCTTEEEEE--S--HHHHHHHH---HHCCCTS
T ss_pred ccCCHhHHHHhheeEEeCCCHHHHHHHH---HHHcCch
Confidence 4699999999999999888877665543 4455653
|
|
| >PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=6.6e-05 Score=84.40 Aligned_cols=133 Identities=16% Similarity=0.266 Sum_probs=77.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH-------
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM------- 516 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a------- 516 (1152)
..+||+||+|||||.+++.+-+.+.... + ....+.-........+..+++..
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~--------------------~-~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~ 92 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDK--------------------Y-LVITINFSAQTTSNQLQKIIESKLEKRRGR 92 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCC--------------------E-EEEEEES-TTHHHHHHHHCCCTTECECTTE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccc--------------------c-ceeEeeccCCCCHHHHHHHHhhcEEcCCCC
Confidence 3589999999999999988765433210 0 01111111112223333333221
Q ss_pred hhCCCCCCceEEEEeCCCCCCHH------HHHHHHHHHhhC------------CCCEEEEEEcCCC---CcchHHHHccc
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPD------SWSAISKVVDRA------------PRRVVFILVSSSL---DALPHIIISRC 575 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~e------aqnaLLklLEep------------p~~VifILaTN~~---dkL~~aL~SR~ 575 (1152)
.+.|..+++-|+||||+++-..+ ..+.|.++++.. -.++.||++++.. ..+++.+.+.+
T Consensus 93 ~~gP~~~k~lv~fiDDlN~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f 172 (272)
T PF12775_consen 93 VYGPPGGKKLVLFIDDLNMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHF 172 (272)
T ss_dssp EEEEESSSEEEEEEETTT-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTE
T ss_pred CCCCCCCcEEEEEecccCCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhhe
Confidence 12344566778999999887543 345666666651 1467788776632 24888999999
Q ss_pred eEEEecCCChhHHHHHHHHHHH
Q 036794 576 QKFFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 576 qvI~F~~p~~~EI~eiL~~iak 597 (1152)
.++.+..|+.+.+..+...++.
T Consensus 173 ~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 173 NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEE----TCCHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHh
Confidence 9999999999988887776665
|
|
| >KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00049 Score=83.47 Aligned_cols=142 Identities=17% Similarity=0.264 Sum_probs=87.6
Q ss_pred CcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|..|.|++.++.-|.-.+-.| +....+++.|.|||||+.+.++.+.-+..... -||........
T Consensus 343 l~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY----tsGkaSSaAGL 418 (764)
T KOG0480|consen 343 LFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY----TSGKASSAAGL 418 (764)
T ss_pred hCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceE----ecCcccccccc
Confidence 3678889999998777666443 11236999999999999999998655432211 12221111111
Q ss_pred cCCCccceEEeCC-CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCC
Q 036794 488 DRGKSRNIKEVGP-VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APR 553 (1152)
Q Consensus 488 ~~g~~~dviEIda-as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~ 553 (1152)
...+.. |. .+.+.++ . ..-+-++.+|--|||+|+|....+.+|+..||. .+.
T Consensus 419 ----TaaVvk-D~esgdf~iE-------A--GALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnA 484 (764)
T KOG0480|consen 419 ----TAAVVK-DEESGDFTIE-------A--GALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNA 484 (764)
T ss_pred ----eEEEEe-cCCCCceeee-------c--CcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecc
Confidence 100100 11 0111111 0 011236778999999999999889999999998 234
Q ss_pred CEEEEEEcCCCC-------------cchHHHHccceEE
Q 036794 554 RVVFILVSSSLD-------------ALPHIIISRCQKF 578 (1152)
Q Consensus 554 ~VifILaTN~~d-------------kL~~aL~SR~qvI 578 (1152)
++-+|+|+|-.. ++.++|+||+..|
T Consensus 485 RtSIlAAANPv~GhYdR~ktl~eNi~msApimSRFDL~ 522 (764)
T KOG0480|consen 485 RTSILAAANPVGGHYDRKKTLRENINMSAPIMSRFDLF 522 (764)
T ss_pred hhhhhhhcCCcCCccccccchhhhcCCCchhhhhhcEE
Confidence 555777776321 3777899999853
|
|
| >PRK06835 DNA replication protein DnaC; Validated | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00017 Score=83.17 Aligned_cols=111 Identities=21% Similarity=0.221 Sum_probs=65.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHH-----------HHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI-----------LDL 512 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeI-----------reL 512 (1152)
..++|+||+|||||++|.++|+++..... .+..+....- ++.+ ...
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~---------------------~V~y~t~~~l--~~~l~~~~~~~~~~~~~~ 240 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK---------------------SVIYRTADEL--IEILREIRFNNDKELEEV 240 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC---------------------eEEEEEHHHH--HHHHHHHHhccchhHHHH
Confidence 56899999999999999999998853311 1222211000 0001 111
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhhC-CCCEEEEEEcCCC-Cc----chHHHHccc----eEEEe
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDTL--SPDSWSAISKVVDRA-PRRVVFILVSSSL-DA----LPHIIISRC----QKFFF 580 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~L--s~eaqnaLLklLEep-p~~VifILaTN~~-dk----L~~aL~SR~----qvI~F 580 (1152)
++.+ ....+|||||++.. +......|+.++++. ...-.+|++||.. .. +.+.+.+|+ ..+.|
T Consensus 241 ~~~l------~~~DLLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl~~~el~~~~~eri~SRL~~~~~~i~~ 314 (329)
T PRK06835 241 YDLL------INCDLLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNLSLEELLKTYSERISSRLLGNFTLLKF 314 (329)
T ss_pred HHHh------ccCCEEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHhHHHHHHHHcCCEEEEe
Confidence 2222 23479999999775 445567888888873 2234577888753 22 344566664 35666
Q ss_pred cCC
Q 036794 581 PKM 583 (1152)
Q Consensus 581 ~~p 583 (1152)
...
T Consensus 315 ~G~ 317 (329)
T PRK06835 315 YGE 317 (329)
T ss_pred cCc
Confidence 543
|
|
| >PRK08939 primosomal protein DnaI; Reviewed | Back alignment and domain information |
|---|
Probab=97.78 E-value=8.5e-05 Score=84.90 Aligned_cols=131 Identities=14% Similarity=0.161 Sum_probs=69.6
Q ss_pred hhCCCCcCcccC----cHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 414 KYMPRTFRDLVG----QNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 414 KyRP~sFddLVG----Qe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+...+|+++.. +..+......++.. +....+++|+||+|||||++|.++|+++...... +.+
T Consensus 120 ~~~~atf~~~~~~~~~~~~~~~~~~~fi~~~~~~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~----v~~------ 189 (306)
T PRK08939 120 DLLQASLADIDLDDRDRLDALMAALDFLEAYPPGEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS----STL------ 189 (306)
T ss_pred hHhcCcHHHhcCCChHHHHHHHHHHHHHHHhhccCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC----EEE------
Confidence 344567887763 23344444455553 2244679999999999999999999998532110 000
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHH--HHHHH-HHhhC-CCCEEEEEEcC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSW--SAISK-VVDRA-PRRVVFILVSS 562 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaq--naLLk-lLEep-p~~VifILaTN 562 (1152)
+..... +.++.. .++-....+.++.+ ....||||||++......+ ..++. +++.- ......|++||
T Consensus 190 ~~~~~l--~~~lk~--~~~~~~~~~~l~~l------~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSN 259 (306)
T PRK08939 190 LHFPEF--IRELKN--SISDGSVKEKIDAV------KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSN 259 (306)
T ss_pred EEHHHH--HHHHHH--HHhcCcHHHHHHHh------cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECC
Confidence 000000 000000 00001122333333 3457999999987644433 23544 44542 35667788887
Q ss_pred CC
Q 036794 563 SL 564 (1152)
Q Consensus 563 ~~ 564 (1152)
-.
T Consensus 260 l~ 261 (306)
T PRK08939 260 FD 261 (306)
T ss_pred CC
Confidence 53
|
|
| >PRK04132 replication factor C small subunit; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=1.2e-05 Score=101.79 Aligned_cols=52 Identities=31% Similarity=0.527 Sum_probs=47.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHH
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSC 459 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtl 459 (1152)
...+|.+||||++|+||+||+.+++.|++++..++++|. ||+||||+||+.+
T Consensus 5 ~~~~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~~~i~h~-l~~g~~g~~~cl~ 56 (846)
T PRK04132 5 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHL-LFAGPPGVGKCLT 56 (846)
T ss_pred hcccHHHhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeE-EEECCCCCCcccc
Confidence 356999999999999999999999999999999999984 6999999999754
|
|
| >KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=85.40 Aligned_cols=232 Identities=13% Similarity=0.204 Sum_probs=128.4
Q ss_pred cccCcHHHHHHHHHHHHhCCCC-----------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 422 DLVGQNLVAQALSNAVMRRKVG-----------LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri~-----------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
.|.|+..++..+.-++-.|-.. -.+||+|.|||||+.+.+.+++.........+ .-.+.+.+...
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTG----qGASavGLTa~ 525 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTG----QGASAVGLTAY 525 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEecc----CCccccceeEE
Confidence 4669999999998888664221 26999999999999999999886554321111 10111111110
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRVVF 557 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~Vif 557 (1152)
..-+|... .| .++. ..-..+.++|-+|||+|+|....-..+-..||. ....+.+
T Consensus 526 -----v~KdPvtr-EW-----TLEa--GALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctv 592 (854)
T KOG0477|consen 526 -----VRKDPVTR-EW-----TLEA--GALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTV 592 (854)
T ss_pred -----EeeCCccc-ee-----eecc--CeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhh
Confidence 00111100 00 0000 001126778999999999986654444444444 2356778
Q ss_pred EEEcCCCC-------------cchHHHHccceEEE-----ecCCChhHHHHHH-HHHHHH-------cCC----------
Q 036794 558 ILVSSSLD-------------ALPHIIISRCQKFF-----FPKMKDADIIYTL-QWIASK-------EGI---------- 601 (1152)
Q Consensus 558 ILaTN~~d-------------kL~~aL~SR~qvI~-----F~~p~~~EI~eiL-~~iakk-------eGl---------- 601 (1152)
|+++|-.. .+.++|+||+.++- +.+..++.+.+++ ..+.+. .++
T Consensus 593 IAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~ 672 (854)
T KOG0477|consen 593 IAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKDTVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVE 672 (854)
T ss_pred heecCCCCCccCCccchhhccccccchhhhcceeeeeecccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccc
Confidence 88887311 36677999988643 3333334444332 222221 112
Q ss_pred CCCHHHHHHHHHhcC---------CCHHHHHHH---HHHHHHhCC--CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHH
Q 036794 602 EIDKDALKLIASRSD---------GSLRDAEMT---LEQLSLLGQ--RISVPLVQELVGLISDEKLVDLLDLALSADTVN 667 (1152)
Q Consensus 602 ~Id~dALelLAe~s~---------GDLR~Ain~---LEkLsLlg~--~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ 667 (1152)
.++.++|..-+.++. +|...+.++ |.+-++..+ .||..+|+.++.......-..|-+.+...|...
T Consensus 673 ~ipq~lLrkyI~yar~~v~PkL~q~d~~K~s~vya~lRkES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~ 752 (854)
T KOG0477|consen 673 PIPQELLRKYIIYAREKVRPKLNQMDMDKISSVYADLRKESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDM 752 (854)
T ss_pred cChHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHhhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHH
Confidence 156666665555533 333333333 233233333 489999999988766666666666666666666
Q ss_pred HHH
Q 036794 668 TVK 670 (1152)
Q Consensus 668 ALk 670 (1152)
|+.
T Consensus 753 AI~ 755 (854)
T KOG0477|consen 753 AIR 755 (854)
T ss_pred HHH
Confidence 654
|
|
| >PHA00729 NTP-binding motif containing protein | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00013 Score=79.95 Aligned_cols=128 Identities=17% Similarity=0.253 Sum_probs=70.8
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHH
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle 514 (1152)
+.+..+... .++|+|+||||||++|.+|++.++.......... .....+.. ... ++.+.+.+.+.
T Consensus 10 ~~l~~~~f~-nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~------~~~d~~~~--~~f------id~~~Ll~~L~ 74 (226)
T PHA00729 10 SAYNNNGFV-SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKD------DAWQYVQN--SYF------FELPDALEKIQ 74 (226)
T ss_pred HHHhcCCeE-EEEEECCCCCCHHHHHHHHHHHHHhhcccccchh------hHHhcCCc--EEE------EEHHHHHHHHH
Confidence 344445443 5899999999999999999998752211110000 00000111 111 23344444444
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHH
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~ 593 (1152)
.+... .....++||||+..-... .+. .+ . + ...-.+.+.+++|+..+.|.+++++++...|+
T Consensus 75 ~a~~~--~~~~dlLIIDd~G~~~~~~~wh-----~~----~----~--~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr 137 (226)
T PHA00729 75 DAIDN--DYRIPLIIFDDAGIWLSKYVWY-----ED----Y----M--KTFYKIYALIRTRVSAVIFTTPSPEDLAFYLR 137 (226)
T ss_pred HHHhc--CCCCCEEEEeCCchhhcccchh-----hh----c----c--chHHHHHHHHHhhCcEEEEecCCHHHHHHHHH
Confidence 33211 123468999997542211 111 00 0 0 11123777889999999999999998888776
Q ss_pred H
Q 036794 594 W 594 (1152)
Q Consensus 594 ~ 594 (1152)
.
T Consensus 138 ~ 138 (226)
T PHA00729 138 E 138 (226)
T ss_pred h
Confidence 4
|
|
| >PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A | Back alignment and domain information |
|---|
Probab=97.75 E-value=3.7e-05 Score=79.18 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=33.5
Q ss_pred cccCcHHHHHHHHHHH--HhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 422 DLVGQNLVAQALSNAV--MRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL--~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.+..++.|...+ .....++.++|+|++|+|||++++.+...+...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 3689999999999988 344555789999999999999999988876544
|
|
| >KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.0017 Score=77.07 Aligned_cols=152 Identities=14% Similarity=0.248 Sum_probs=85.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCC-----------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV-----------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri-----------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~ 474 (1152)
..|..+.....| .|.|++++++++.-.+-.|.. .-.+||.|.|||-|+.+.+.+-+-..-.....
T Consensus 320 d~Ye~is~sIAP----SIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTS 395 (729)
T KOG0481|consen 320 DVYERISKSIAP----SIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTS 395 (729)
T ss_pred cHHHHHhhccCc----hhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEec
Confidence 345555555655 466999999988877655321 12699999999999999998855321111000
Q ss_pred CCCCCCCCccccccCCCccceEEeCCCC-CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---
Q 036794 475 PKPCGFCNSCISHDRGKSRNIKEVGPVG-NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--- 550 (1152)
Q Consensus 475 ~epcg~c~~c~~i~~g~~~dviEIdaas-~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--- 550 (1152)
|.-.+......+. .-|+.. .+-. +. ..-..++++||.|||+|+|-++.--++-..||.
T Consensus 396 ----GKGSSAAGLTASV-----~RD~~tReFyl-------EG--GAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTI 457 (729)
T KOG0481|consen 396 ----GKGSSAAGLTASV-----IRDPSTREFYL-------EG--GAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTI 457 (729)
T ss_pred ----CCCcccccceeeE-----EecCCcceEEE-------ec--ceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhH
Confidence 0000011110000 001100 0000 00 001126779999999999988877777777776
Q ss_pred ----------CCCCEEEEEEcCCC----C---------cchHHHHccceEEE
Q 036794 551 ----------APRRVVFILVSSSL----D---------ALPHIIISRCQKFF 579 (1152)
Q Consensus 551 ----------pp~~VifILaTN~~----d---------kL~~aL~SR~qvI~ 579 (1152)
...++-+++++|.+ + .+.++|+||+..|.
T Consensus 458 SIAKAGITT~LNSRtSVLAAANpvfGRyDd~Kt~~dNIDf~~TILSRFDmIF 509 (729)
T KOG0481|consen 458 SIAKAGITTTLNSRTSVLAAANPVFGRYDDTKTGEDNIDFMPTILSRFDMIF 509 (729)
T ss_pred HHhhhcceeeecchhhhhhhcCCccccccccCCcccccchhhhHhhhccEEE
Confidence 22344455666521 1 37789999998543
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0014 Score=87.00 Aligned_cols=193 Identities=17% Similarity=0.120 Sum_probs=101.4
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
..|+++||.+..++.|..++.. ......+-|+|+.|+||||+|++++..+...+.. .|......... .....
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g---~vfv~~~~v~~----~~~~~ 253 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQS---SVFIDRAFISK----SMEIY 253 (1153)
T ss_pred cccccccchHHHHHHHHHHHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCe---EEEeecccccc----chhhc
Confidence 4688999999888888887753 2334578999999999999999998877543210 00000000000 00000
Q ss_pred E-eCCCCCC-CHHHHHHHHHHHh-------------hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 497 E-VGPVGNF-DFESILDLLDNMV-------------TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 497 E-Idaas~~-~vdeIreLle~a~-------------~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
. .+..... ...-..+++..+. ..-...++-+||||+++. ...++.|....+.......+|++|
T Consensus 254 ~~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L~~krvLLVLDdv~~--~~~l~~L~~~~~~~~~GsrIIiTT 331 (1153)
T PLN03210 254 SSANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERLKHRKVLIFIDDLDD--QDVLDALAGQTQWFGSGSRIIVIT 331 (1153)
T ss_pred ccccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHHhCCeEEEEEeCCCC--HHHHHHHHhhCccCCCCcEEEEEe
Confidence 0 0000000 0000001111100 000123456888999875 334555554444334566788888
Q ss_pred CCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCC--HHHHHHHHHhcCCCHHH
Q 036794 562 SSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID--KDALKLIASRSDGSLRD 621 (1152)
Q Consensus 562 N~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id--~dALelLAe~s~GDLR~ 621 (1152)
.+.+.+... .-..++.+..++.++..+++...+-.....-+ .+....++.+++|-+-.
T Consensus 332 rd~~vl~~~--~~~~~~~v~~l~~~ea~~LF~~~Af~~~~~~~~~~~l~~~iv~~c~GLPLA 391 (1153)
T PLN03210 332 KDKHFLRAH--GIDHIYEVCLPSNELALEMFCRSAFKKNSPPDGFMELASEVALRAGNLPLG 391 (1153)
T ss_pred CcHHHHHhc--CCCeEEEecCCCHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCcHH
Confidence 765532210 01236788888888888777776643322111 13455567777775543
|
syringae 6; Provisional |
| >TIGR02688 conserved hypothetical protein TIGR02688 | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0012 Score=78.27 Aligned_cols=114 Identities=17% Similarity=0.242 Sum_probs=66.7
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
-|.|..|++ ...+..|...+.--..+..+++.||+|||||++|.+++....|...
T Consensus 184 G~~P~~~~~----r~k~~~L~rl~~fve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG--------------------- 238 (449)
T TIGR02688 184 GYEPEGFEA----RQKLLLLARLLPLVEPNYNLIELGPKGTGKSYIYNNLSPYVILISG--------------------- 238 (449)
T ss_pred CCCcccCCh----HHHHHHHHhhHHHHhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---------------------
Confidence 477777752 3333444433222222345899999999999999999877433210
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHh--hCCCCCCceEEEEeCCCCCCH----HHHHHHHHHHhh---------CCCCEEEE
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMV--TSRPPSQYRIFVFDDCDTLSP----DSWSAISKVVDR---------APRRVVFI 558 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~--~~P~~a~~kVVIIDEID~Ls~----eaqnaLLklLEe---------pp~~VifI 558 (1152)
...... .++.++. .....+.+.+|+|||+..++. +....|..+|+. ...+.-++
T Consensus 239 --------~f~T~a---~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~~~~~~v~imK~yMesg~fsRG~~~~~a~as~v 307 (449)
T TIGR02688 239 --------GTITVA---KLFYNISTRQIGLVGRWDVVAFDEVATLKFAKPKELIGILKNYMESGSFTRGDETKSSDASFV 307 (449)
T ss_pred --------CcCcHH---HHHHHHHHHHHhhhccCCEEEEEcCCCCcCCchHHHHHHHHHHHHhCceeccceeeeeeeEEE
Confidence 001111 1222211 112236779999999999643 356778888886 23466677
Q ss_pred EEcCC
Q 036794 559 LVSSS 563 (1152)
Q Consensus 559 LaTN~ 563 (1152)
|..|-
T Consensus 308 fvGNi 312 (449)
T TIGR02688 308 FLGNV 312 (449)
T ss_pred EEccc
Confidence 77663
|
Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687. |
| >COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.00059 Score=71.05 Aligned_cols=147 Identities=17% Similarity=0.225 Sum_probs=73.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCcc-----------ccccCCCccceEEeCCC----C--CCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSC-----------ISHDRGKSRNIKEVGPV----G--NFD 505 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c-----------~~i~~g~~~dviEIdaa----s--~~~ 505 (1152)
.-++++|+||+||||++.-++..|....... +|+ |... ..+..|...-+-..+.. + ...
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kv---gGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~ 82 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKV---GGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVN 82 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCcee---eeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEee
Confidence 3478999999999999999998886542111 111 1111 11111111111111110 0 022
Q ss_pred HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---HHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecC
Q 036794 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---PDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582 (1152)
Q Consensus 506 vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~ 582 (1152)
++.+.++...+....+ ....||||||++.|- .....++-.+|....+ +++.+--+.-+.+...++++..++-|
T Consensus 83 v~~le~i~~~al~rA~-~~aDvIIIDEIGpMElks~~f~~~ve~vl~~~kp-liatlHrrsr~P~v~~ik~~~~v~v~-- 158 (179)
T COG1618 83 VEGLEEIAIPALRRAL-EEADVIIIDEIGPMELKSKKFREAVEEVLKSGKP-LIATLHRRSRHPLVQRIKKLGGVYVF-- 158 (179)
T ss_pred HHHHHHHhHHHHHHHh-hcCCEEEEecccchhhccHHHHHHHHHHhcCCCc-EEEEEecccCChHHHHhhhcCCEEEE--
Confidence 3333333222211111 124799999999874 3334455555554322 33333323445566678888887776
Q ss_pred CChhHHHHHHHHHHH
Q 036794 583 MKDADIIYTLQWIAS 597 (1152)
Q Consensus 583 p~~~EI~eiL~~iak 597 (1152)
+++...-.++.+++.
T Consensus 159 lt~~NR~~i~~~Il~ 173 (179)
T COG1618 159 LTPENRNRILNEILS 173 (179)
T ss_pred EccchhhHHHHHHHH
Confidence 555544445544443
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00014 Score=93.77 Aligned_cols=142 Identities=17% Similarity=0.251 Sum_probs=91.4
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe---CC----CCCCC
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV---GP----VGNFD 505 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI---da----as~~~ 505 (1152)
|...++.-....++||-|.||+|||+++.++|+..+.. |..++.+...++..+ +. .+.+.
T Consensus 1533 l~rVlRAmqv~kpilLEGsPGVGKTSlItaLAr~tG~k-------------liRINLSeQTdL~DLfGsd~Pve~~Gef~ 1599 (4600)
T COG5271 1533 LRRVLRAMQVGKPILLEGSPGVGKTSLITALARKTGKK-------------LIRINLSEQTDLCDLFGSDLPVEEGGEFR 1599 (4600)
T ss_pred HHHHHHHHhcCCceeecCCCCccHHHHHHHHHHHhcCc-------------eEEeeccccchHHHHhCCCCCcccCceeE
Confidence 34444444555678999999999999999999998754 233333332222211 11 11122
Q ss_pred HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh------C--------CCCEEEEEEcCCCC------
Q 036794 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------A--------PRRVVFILVSSSLD------ 565 (1152)
Q Consensus 506 vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------p--------p~~VifILaTN~~d------ 565 (1152)
|.+. .++..+ .++.-|++||+...+..+.+.|-..|+. | .++. .|||+-+|.
T Consensus 1600 w~da-pfL~am------r~G~WVlLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~Hpnf-rVFAaqNPq~qggGR 1671 (4600)
T COG5271 1600 WMDA-PFLHAM------RDGGWVLLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNF-RVFAAQNPQDQGGGR 1671 (4600)
T ss_pred eccc-HHHHHh------hcCCEEEeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCe-eeeeecCchhcCCCc
Confidence 2111 122222 4568999999998888888888777775 1 1233 355554442
Q ss_pred -cchHHHHccceEEEecCCChhHHHHHHHHH
Q 036794 566 -ALPHIIISRCQKFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 566 -kL~~aL~SR~qvI~F~~p~~~EI~eiL~~i 595 (1152)
-||..+..|+.++....++.+++..++...
T Consensus 1672 KgLPkSF~nRFsvV~~d~lt~dDi~~Ia~~~ 1702 (4600)
T COG5271 1672 KGLPKSFLNRFSVVKMDGLTTDDITHIANKM 1702 (4600)
T ss_pred ccCCHHHhhhhheEEecccccchHHHHHHhh
Confidence 499999999999999999999987766543
|
|
| >COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0003 Score=78.45 Aligned_cols=27 Identities=37% Similarity=0.452 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
....++|+||+|||||++|-+|++++.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~ 130 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELL 130 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHH
Confidence 344689999999999999999999987
|
|
| >PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency [] | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00011 Score=76.94 Aligned_cols=64 Identities=19% Similarity=0.224 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEEEEEcCC--CCcchHHHHcc--ceEEEecCCChhHHHH
Q 036794 524 QYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVFILVSSS--LDALPHIIISR--CQKFFFPKMKDADIIY 590 (1152)
Q Consensus 524 ~~kVVIIDEID~L---s~eaqnaLLklLEepp~~VifILaTN~--~dkL~~aL~SR--~qvI~F~~p~~~EI~e 590 (1152)
...+++|||++.| .....+++.++|+. +.. +|++-.. ...+.+.+.+| +.++.+.+-..+.+..
T Consensus 95 ~~~liviDEIG~mEl~~~~F~~~v~~~l~s-~~~--vi~vv~~~~~~~~l~~i~~~~~~~i~~vt~~NRd~l~~ 165 (168)
T PF03266_consen 95 SSDLIVIDEIGKMELKSPGFREAVEKLLDS-NKP--VIGVVHKRSDNPFLEEIKRRPDVKIFEVTEENRDALPE 165 (168)
T ss_dssp CCHEEEE---STTCCC-CHHHHHHHHHHCT-TSE--EEEE--SS--SCCHHHHHTTTTSEEEE--TTTCCCHHH
T ss_pred CCCEEEEeccchhhhcCHHHHHHHHHHHcC-CCc--EEEEEecCCCcHHHHHHHhCCCcEEEEeChhHHhhHhh
Confidence 4579999999987 45567788999983 223 4444332 34578889988 7778777666555543
|
It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A. |
| >PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite | Back alignment and domain information |
|---|
Probab=97.59 E-value=2.9e-05 Score=89.44 Aligned_cols=150 Identities=18% Similarity=0.249 Sum_probs=76.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC-----------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK-----------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr-----------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
.+..+.+-..| .|.|++.++..+.-.+-.+. ..-.+||.|.|||||+.+.+.+++........
T Consensus 14 ~~~~l~~s~aP----~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~~-- 87 (331)
T PF00493_consen 14 IFDRLANSIAP----SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVYT-- 87 (331)
T ss_dssp HHHCCHHHCSS----TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEEE--
T ss_pred HHHHHHHHhCC----cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEEE--
Confidence 34455555554 57788888777654443321 12269999999999999998775432211100
Q ss_pred CCCCCCCccccccCCCccceEEeCCC-CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPV-GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---- 550 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaa-s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---- 550 (1152)
+|.-..-..+.. ...-++. +...++. ..+ ..++++|++|||+|.+..+....|+.+||.
T Consensus 88 --~g~~~s~~gLta-----~~~~d~~~~~~~lea-Gal--------vlad~GiccIDe~dk~~~~~~~~l~eaMEqq~is 151 (331)
T PF00493_consen 88 --SGKGSSAAGLTA-----SVSRDPVTGEWVLEA-GAL--------VLADGGICCIDEFDKMKEDDRDALHEAMEQQTIS 151 (331)
T ss_dssp --ECCGSTCCCCCE-----EECCCGGTSSECEEE--HH--------HHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEE
T ss_pred --CCCCcccCCccc-----eeccccccceeEEeC-Cch--------hcccCceeeecccccccchHHHHHHHHHHcCeec
Confidence 000000000000 0000000 0000000 001 015679999999999999999999999998
Q ss_pred ---------CCCCEEEEEEcCCCC-------------cchHHHHccceEE
Q 036794 551 ---------APRRVVFILVSSSLD-------------ALPHIIISRCQKF 578 (1152)
Q Consensus 551 ---------pp~~VifILaTN~~d-------------kL~~aL~SR~qvI 578 (1152)
.+.++-|++++|-.. .++++|++||..|
T Consensus 152 i~kagi~~~l~ar~svlaa~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLi 201 (331)
T PF00493_consen 152 IAKAGIVTTLNARCSVLAAANPKFGRYDPNKSLSENINLPPPLLSRFDLI 201 (331)
T ss_dssp ECTSSSEEEEE---EEEEEE--TT--S-TTS-CGCCT-S-CCCHCC-SEE
T ss_pred cchhhhcccccchhhhHHHHhhhhhhcchhhhhHHhcccchhhHhhcCEE
Confidence 245667888876321 3777899999854
|
; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A. |
| >PHA02774 E1; Provisional | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00047 Score=83.99 Aligned_cols=138 Identities=20% Similarity=0.208 Sum_probs=81.1
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFES 508 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vde 508 (1152)
....|+.+++......+++|+||||||||++|.+|++.++... +..++..+.+-+
T Consensus 420 fl~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~v-----------------------i~fvN~~s~FwL-- 474 (613)
T PHA02774 420 FLTALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKV-----------------------ISFVNSKSHFWL-- 474 (613)
T ss_pred HHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCE-----------------------EEEEECcccccc--
Confidence 4455666665433335899999999999999999999986321 111111111111
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhCC-------------CCEEEEEEcCCC---CcchHHH
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLS-PDSWSAISKVVDRAP-------------RRVVFILVSSSL---DALPHII 571 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls-~eaqnaLLklLEepp-------------~~VifILaTN~~---dkL~~aL 571 (1152)
.|. ...++++|||+-.-. .-....|..+|+..+ ....+|++||-. +.-...|
T Consensus 475 ----------qpl-~d~ki~vlDD~t~~~w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL 543 (613)
T PHA02774 475 ----------QPL-ADAKIALLDDATHPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYL 543 (613)
T ss_pred ----------chh-ccCCEEEEecCcchHHHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHh
Confidence 111 344799999982221 122335666666532 123467777732 1234458
Q ss_pred HccceEEEecCC-------------ChhHHHHHHHHHHHHcCCC
Q 036794 572 ISRCQKFFFPKM-------------KDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 572 ~SR~qvI~F~~p-------------~~~EI~eiL~~iakkeGl~ 602 (1152)
.+|...|.|+.+ +......+.++...+..+.
T Consensus 544 ~sRi~~f~F~n~~P~d~~G~P~f~ltd~~WKsFF~rlw~~LdL~ 587 (613)
T PHA02774 544 HSRITVFEFPNPFPLDENGNPVFELTDANWKSFFERLWSQLDLS 587 (613)
T ss_pred hhhEEEEECCCCCCcCCCCCEeeeeCchhHHHHHHHHHHHcCCC
Confidence 899999988754 3345566666666665543
|
|
| >PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.00013 Score=77.04 Aligned_cols=102 Identities=22% Similarity=0.236 Sum_probs=53.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~ 521 (1152)
....++|+||+|||||++|.++++++..... ++.+ +....- +..+... ..-....+++..+.
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~----~v~f------~~~~~L--~~~l~~~--~~~~~~~~~~~~l~---- 107 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGY----SVLF------ITASDL--LDELKQS--RSDGSYEELLKRLK---- 107 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT------EEE------EEHHHH--HHHHHCC--HCCTTHCHHHHHHH----
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCc----ceeE------eecCce--ecccccc--ccccchhhhcCccc----
Confidence 3457999999999999999999998754211 0000 000000 0000000 00011122333332
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLS--PDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls--~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
+..++||||++... ....+.|..+++.--.+-..|++||.
T Consensus 108 --~~dlLilDDlG~~~~~~~~~~~l~~ii~~R~~~~~tIiTSN~ 149 (178)
T PF01695_consen 108 --RVDLLILDDLGYEPLSEWEAELLFEIIDERYERKPTIITSNL 149 (178)
T ss_dssp --TSSCEEEETCTSS---HHHHHCTHHHHHHHHHT-EEEEEESS
T ss_pred --cccEecccccceeeecccccccchhhhhHhhcccCeEeeCCC
Confidence 33799999998764 44556777777762223357778874
|
They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A. |
| >PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5) | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.00021 Score=69.09 Aligned_cols=75 Identities=20% Similarity=0.297 Sum_probs=46.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~ 525 (1152)
+.|+||+|+|||++|+.|++.+........ ...++...+... ..+. . ...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~----------------~~~vy~~~~~~~--------~w~g-----Y-~~q 50 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPT----------------KDSVYTRNPGDK--------FWDG-----Y-QGQ 50 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCC----------------CCcEEeCCCccc--------hhhc-----c-CCC
Confidence 479999999999999999998875421110 011222111111 1111 1 244
Q ss_pred eEEEEeCCCCCCHH----HHHHHHHHHhh
Q 036794 526 RIFVFDDCDTLSPD----SWSAISKVVDR 550 (1152)
Q Consensus 526 kVVIIDEID~Ls~e----aqnaLLklLEe 550 (1152)
.++++||+...... ....|++++..
T Consensus 51 ~vvi~DD~~~~~~~~~~~~~~~l~~l~s~ 79 (107)
T PF00910_consen 51 PVVIIDDFGQDNDGYNYSDESELIRLISS 79 (107)
T ss_pred cEEEEeecCccccccchHHHHHHHHHHhc
Confidence 79999999887754 56678887765
|
All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity |
| >PF14516 AAA_35: AAA-like domain | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.015 Score=67.36 Aligned_cols=209 Identities=14% Similarity=0.110 Sum_probs=110.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCC-CCCCCC--------C-----CccccccC
Q 036794 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ-PKPCGF--------C-----NSCISHDR 489 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-~epcg~--------c-----~~c~~i~~ 489 (1152)
|....+-+.+.+.+... +..+.+.||+.+|||++...+.+.+....... ...|.. . ..|..+..
T Consensus 14 i~R~~~e~~~~~~i~~~--G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~ 91 (331)
T PF14516_consen 14 IERPPAEQECYQEIVQP--GSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISR 91 (331)
T ss_pred cCchHHHHHHHHHHhcC--CCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHH
Confidence 55666777777777652 23478999999999999999887765331100 000000 0 00101100
Q ss_pred CCccceEEeCC---CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--HH----HHHHHHHHhh-----CCCCE
Q 036794 490 GKSRNIKEVGP---VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--DS----WSAISKVVDR-----APRRV 555 (1152)
Q Consensus 490 g~~~dviEIda---as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--ea----qnaLLklLEe-----pp~~V 555 (1152)
.-..+. .++. ............++..... ...++-|++|||+|.+.. .. +..|....++ .....
T Consensus 92 ~L~l~~-~l~~~w~~~~~~~~~~~~~~~~~ll~-~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~~~~~~~~~L 169 (331)
T PF14516_consen 92 QLKLDE-KLDEYWDEEIGSKISCTEYFEEYLLK-QIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQRKNNPIWQKL 169 (331)
T ss_pred HcCCCh-hHHHHHHHhcCChhhHHHHHHHHHHh-cCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhcccCcccceE
Confidence 000000 0000 0000111222333332111 114557899999998864 22 2222233332 12457
Q ss_pred EEEEEcCCCCcchHHH-H---ccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 556 VFILVSSSLDALPHII-I---SRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 556 ifILaTN~~dkL~~aL-~---SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
.||++......++..+ . .-+..+.++..+.+++...++ ..+..+++..++.|...++|..--....+..++.
T Consensus 170 ~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~----~~~~~~~~~~~~~l~~~tgGhP~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 170 RLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQ----RYGLEFSQEQLEQLMDWTGGHPYLVQKACYLLVE 245 (331)
T ss_pred EEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHH----hhhccCCHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7777764322122111 1 223357888889998876654 4577889999999999999988766555555543
Q ss_pred hCCCCCHHHHH
Q 036794 632 LGQRISVPLVQ 642 (1152)
Q Consensus 632 lg~~IT~EdV~ 642 (1152)
+.++.+++.
T Consensus 246 --~~~~~~~l~ 254 (331)
T PF14516_consen 246 --EQITLEQLL 254 (331)
T ss_pred --ccCcHHHHH
Confidence 356655443
|
|
| >PRK04296 thymidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0011 Score=70.70 Aligned_cols=111 Identities=14% Similarity=0.198 Sum_probs=55.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC-CCCCCHHHHHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP-VGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda-as~~~vdeIreLle~a~~~P~~ 522 (1152)
..+|++||+|+|||+++..++..+..... .+.+.........+...-...++- .....+....+++..+.. ..
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~----~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~--~~ 76 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGM----KVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE--EG 76 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCC----eEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHh--hC
Confidence 46899999999999999888877633211 010000000000000000000000 000011122333333322 23
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+.+|+|||++.++.+....|++.+.. ..+.+|++.-
T Consensus 77 ~~~dvviIDEaq~l~~~~v~~l~~~l~~--~g~~vi~tgl 114 (190)
T PRK04296 77 EKIDCVLIDEAQFLDKEQVVQLAEVLDD--LGIPVICYGL 114 (190)
T ss_pred CCCCEEEEEccccCCHHHHHHHHHHHHH--cCCeEEEEec
Confidence 5678999999999987755667777665 3455555543
|
|
| >TIGR01618 phage_P_loop phage nucleotide-binding protein | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.00028 Score=77.19 Aligned_cols=86 Identities=17% Similarity=0.284 Sum_probs=49.9
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhC
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS 519 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~ 519 (1152)
.+.+..+||||+||+|||++|+.++........... ..........++..++.. ..++.+.+.+..+.
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~~~~~~~~~d~~--------~~~l~g~~~~~v~~~d~~--~~~~~~~d~l~~~~-- 76 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLPGKTLVLSFDMS--------SKVLIGDENVDIADHDDM--PPIQAMVEFYVMQN-- 76 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcCCCCEEEecccc--------chhccCCCCCceeecCCC--CCHHHHHHHHHHHH--
Confidence 345677999999999999999998632111110000 001111112234444332 34666666665443
Q ss_pred CCCCCceEEEEeCCCCCC
Q 036794 520 RPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls 537 (1152)
.....+.+||||.++.|.
T Consensus 77 ~~~~~ydtVVIDsI~~l~ 94 (220)
T TIGR01618 77 IQAVKYDNIVIDNISALQ 94 (220)
T ss_pred hccccCCEEEEecHHHHH
Confidence 234678999999998773
|
This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown. |
| >COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0077 Score=71.46 Aligned_cols=120 Identities=15% Similarity=0.229 Sum_probs=69.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~ 524 (1152)
+++++||+++||||+++.+.+.+..... ++..+. .......+.+.+......... +
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~i----------------------y~~~~d-~~~~~~~l~d~~~~~~~~~~~-~ 94 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEII----------------------YINFDD-LRLDRIELLDLLRAYIELKER-E 94 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceE----------------------EEEecc-hhcchhhHHHHHHHHHHhhcc-C
Confidence 8999999999999999887766532100 000000 011112222333332211111 5
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC----CcchHHHHccceEEEecCCChhHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL----DALPHIIISRCQKFFFPKMKDADIIYT 591 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~----dkL~~aL~SR~qvI~F~~p~~~EI~ei 591 (1152)
...+|||||+.+.. -+.+|..+.+..+. -|+++++.. ....+.+.-|...+.+.|++-.|....
T Consensus 95 ~~yifLDEIq~v~~-W~~~lk~l~d~~~~--~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 95 KSYIFLDEIQNVPD-WERALKYLYDRGNL--DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKL 162 (398)
T ss_pred CceEEEecccCchh-HHHHHHHHHccccc--eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhh
Confidence 56899999998764 33344444444333 344444322 346667888988999999998887654
|
|
| >PRK09183 transposase/IS protein; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0006 Score=76.17 Aligned_cols=95 Identities=18% Similarity=0.200 Sum_probs=53.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCC-CH------HHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNF-DF------ESILDLLDNM 516 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~-~v------deIreLle~a 516 (1152)
..++|+||+|+|||++|.+|+..+..... .+..+....-. .. ..+...+...
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~---------------------~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~ 161 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI---------------------KVRFTTAADLLLQLSTAQRQGRYKTTLQRG 161 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC---------------------eEEEEeHHHHHHHHHHHHHCCcHHHHHHHH
Confidence 46889999999999999999877532210 01111100000 00 0111222221
Q ss_pred hhCCCCCCceEEEEeCCCCC--CHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 517 VTSRPPSQYRIFVFDDCDTL--SPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~L--s~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
.....++||||++.+ .....+.|+.+++..-....+|++||.+
T Consensus 162 -----~~~~dlLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s~iiTsn~~ 206 (259)
T PRK09183 162 -----VMAPRLLIIDEIGYLPFSQEEANLFFQVIAKRYEKGSMILTSNLP 206 (259)
T ss_pred -----hcCCCEEEEcccccCCCChHHHHHHHHHHHHHHhcCcEEEecCCC
Confidence 133479999999985 4455567888886522223477788753
|
|
| >KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0094 Score=68.45 Aligned_cols=71 Identities=25% Similarity=0.399 Sum_probs=48.3
Q ss_pred eEEEEeCCCCCCHHH-HHHHHHHHhh---CCCCEEEEEEcCCCC---cchHHHHccce---EEEecCCChhHHHHHHHHH
Q 036794 526 RIFVFDDCDTLSPDS-WSAISKVVDR---APRRVVFILVSSSLD---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 526 kVVIIDEID~Ls~ea-qnaLLklLEe---pp~~VifILaTN~~d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~i 595 (1152)
.++|+||+|.+.... |..|..+++- ....+.+|..|+..+ .+-+.+.||+. ++-++..+..+.+++.+..
T Consensus 139 ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~l 218 (408)
T KOG2228|consen 139 VIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKL 218 (408)
T ss_pred EEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHH
Confidence 456678999876554 4444555543 456888999998776 45667888886 3445566677888777766
Q ss_pred H
Q 036794 596 A 596 (1152)
Q Consensus 596 a 596 (1152)
.
T Consensus 219 l 219 (408)
T KOG2228|consen 219 L 219 (408)
T ss_pred h
Confidence 4
|
|
| >KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0018 Score=75.15 Aligned_cols=213 Identities=15% Similarity=0.174 Sum_probs=114.4
Q ss_pred CcccCcHHHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
..+.+.+..+..|...+-.. ..+..+.|||..|||||.+.+.+-+..+.++. +..|..|.........-+..+
T Consensus 6 ~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~v-----w~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENV-----WLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcce-----eeehHHhccHHHHHHHHHHHh
Confidence 35667888888888887553 35667899999999999999999998854432 233555554422111111111
Q ss_pred ---CCC---CCCCHHHHHHHHHHHhhCCC---CCCceEEEEeCCCCCCH---HHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 499 ---GPV---GNFDFESILDLLDNMVTSRP---PSQYRIFVFDDCDTLSP---DSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 499 ---daa---s~~~vdeIreLle~a~~~P~---~a~~kVVIIDEID~Ls~---eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
+.. .....+.+.+.+..+...+. .+..-++|+|.+|.+.. ..++.|+++-+-.+ ..+.||++.....
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lrD~~a~ll~~l~~L~el~~~~~i~iils~~~~e 160 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALRDMDAILLQCLFRLYELLNEPTIVIILSAPSCE 160 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhhccchHHHHHHHHHHHHhCCCceEEEEeccccH
Confidence 000 01112334444433332121 13345678999998753 34444444433322 3666666665444
Q ss_pred cchHHHHcc--ceEEEecCCChhHHHHHHHHHHH-HcCCCCCHHHHHHHHHh---cCCCHHHHHHHHHHH-HHhCCCCCH
Q 036794 566 ALPHIIISR--CQKFFFPKMKDADIIYTLQWIAS-KEGIEIDKDALKLIASR---SDGSLRDAEMTLEQL-SLLGQRISV 638 (1152)
Q Consensus 566 kL~~aL~SR--~qvI~F~~p~~~EI~eiL~~iak-keGl~Id~dALelLAe~---s~GDLR~Ain~LEkL-sLlg~~IT~ 638 (1152)
+....=..- ...+.|+.++.+++..++..--- +...++=...+..+.+. .-+|+.++..++..+ -.+.++|+.
T Consensus 161 ~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~~p~~r~~~~ya~fl~v~l~vF~~~crd~~eL~~~~~~~wpky~epi~~ 240 (438)
T KOG2543|consen 161 KQYLINTGTLEIVVLHFPQYSVEETQVILSRDNPGKRKLDVYAQFLHVLLQVFYMACRDVNELRSLISLAWPKYCEPITK 240 (438)
T ss_pred HHhhcccCCCCceEEecCCCCHHHHHHHHhcCCccccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhcccccc
Confidence 322210111 22589999999999887753211 11111112223333332 225888888888875 344444443
|
|
| >PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.00071 Score=72.43 Aligned_cols=95 Identities=18% Similarity=0.347 Sum_probs=53.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHH-------HH-
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL-------DN- 515 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl-------e~- 515 (1152)
..+++.||+|||||++++.+...+.... ..++.+.+. +.....+.+-. ..
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g---------------------~~v~~~apT-~~Aa~~L~~~~~~~a~Ti~~~ 76 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG---------------------KRVIGLAPT-NKAAKELREKTGIEAQTIHSF 76 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT-----------------------EEEEESS-HHHHHHHHHHHTS-EEEHHHH
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC---------------------CeEEEECCc-HHHHHHHHHhhCcchhhHHHH
Confidence 4678999999999999999988776431 012222211 11111111111 00
Q ss_pred HhhCC--------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 516 MVTSR--------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 516 a~~~P--------~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
+...+ ....+.+|||||+.+++...+..|++.+... ++.+|++..
T Consensus 77 l~~~~~~~~~~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~--~~klilvGD 129 (196)
T PF13604_consen 77 LYRIPNGDDEGRPELPKKDVLIVDEASMVDSRQLARLLRLAKKS--GAKLILVGD 129 (196)
T ss_dssp TTEECCEECCSSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-
T ss_pred HhcCCcccccccccCCcccEEEEecccccCHHHHHHHHHHHHhc--CCEEEEECC
Confidence 00001 1244579999999999999988888888773 455555553
|
|
| >COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.002 Score=83.96 Aligned_cols=152 Identities=17% Similarity=0.209 Sum_probs=97.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~ 524 (1152)
.+||.||+-+|||+++..+|+..+..+...+.- .-.+...+.+.+..+..+...+.+ .-+++.+ .+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~tghkfVRINNH-------EHTdlqeYiGTyvTdd~G~lsFkE-GvLVeAl------R~ 955 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARETGHKFVRINNH-------EHTDLQEYIGTYVTDDDGSLSFKE-GVLVEAL------RR 955 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHhCccEEEecCc-------ccchHHHHhhceeecCCCceeeeh-hHHHHHH------hc
Confidence 389999999999999999999987654332200 000011111112222222222211 1133433 23
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhh-------------CCCCEEEEEEcCCCC-------cchHHHHccceEEEecCCC
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDR-------------APRRVVFILVSSSLD-------ALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEe-------------pp~~VifILaTN~~d-------kL~~aL~SR~qvI~F~~p~ 584 (1152)
+--|++||....+.++.++|-++|++ .|..-..+|||-+|. .|..+++.|+..++|..++
T Consensus 956 GyWIVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE~hFddip 1035 (4600)
T COG5271 956 GYWIVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLEMHFDDIP 1035 (4600)
T ss_pred CcEEEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHhhhcccCc
Confidence 46899999999999999999999987 122223456665543 3788999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRS 615 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s 615 (1152)
.+++..+|... ..|.+.....+++-.
T Consensus 1036 edEle~ILh~r-----c~iapSyakKiVeVy 1061 (4600)
T COG5271 1036 EDELEEILHGR-----CEIAPSYAKKIVEVY 1061 (4600)
T ss_pred HHHHHHHHhcc-----CccCHHHHHHHHHHH
Confidence 99999988754 456666666655553
|
|
| >PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0004 Score=69.72 Aligned_cols=50 Identities=34% Similarity=0.486 Sum_probs=41.6
Q ss_pred CcccCcHHHHHHHHHHHHh------CCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 421 RDLVGQNLVAQALSNAVMR------RKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..|.||..+++.+.++|.. .+.|.++.|+|++|||||.+++.||+.+...
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~ 80 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKS 80 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhc
Confidence 4689999888888888765 3445577899999999999999999998754
|
Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins ( |
| >PHA02624 large T antigen; Provisional | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0012 Score=80.74 Aligned_cols=38 Identities=24% Similarity=0.268 Sum_probs=28.9
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++..+..-.....+||+||+|||||+++.+|++.++..
T Consensus 421 lk~~l~giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~ 458 (647)
T PHA02624 421 LKLIVENVPKRRYWLFKGPVNSGKTTLAAALLDLCGGK 458 (647)
T ss_pred HHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 33333333444689999999999999999999998543
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0018 Score=64.49 Aligned_cols=23 Identities=35% Similarity=0.628 Sum_probs=21.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHc
Q 036794 446 YVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++|+||+|+|||+++..++..+.
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~ 24 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIA 24 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998874
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals | Back alignment and domain information |
|---|
Probab=97.21 E-value=0.014 Score=66.08 Aligned_cols=43 Identities=23% Similarity=0.367 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 428 LVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 428 ~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
...+.|.+.|... ..+.++-|+|+-|+|||++.+.+-+.+...
T Consensus 3 ~~a~~la~~I~~~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 3 PYAKALAEIIKNPDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred HHHHHHHHHHhccCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 4567778888776 567789999999999999999999888765
|
Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side []. |
| >PRK12723 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0032 Score=74.39 Aligned_cols=145 Identities=13% Similarity=0.207 Sum_probs=74.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC-CCCCCCCccccccC-------CCccceEEeCCCCCCCHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQP-KPCGFCNSCISHDR-------GKSRNIKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~-epcg~c~~c~~i~~-------g~~~dviEIdaas~~~vdeIreLle 514 (1152)
+..++|+||+|+||||++..+|..+.......+ ..+.....|..... +...++ .+ ......+.+...+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgv-pv--~~~~~~~~l~~~L~ 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGI-PV--KAIESFKDLKEEIT 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCc-ce--EeeCcHHHHHHHHH
Confidence 458999999999999999999987642210000 01111111111100 000000 00 00112344444443
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhC--CCCEEEEEEcCCCC-cchHHHHccc-----eEEEecCCC
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRA--PRRVVFILVSSSLD-ALPHIIISRC-----QKFFFPKMK 584 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEep--p~~VifILaTN~~d-kL~~aL~SR~-----qvI~F~~p~ 584 (1152)
.. ..+.+||||+++.++.+. ...|.++++.. +..+++++.++.-. .+. .+..++ ..+-|.+++
T Consensus 251 ~~------~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~~~~~~~~~~~~~I~TKlD 323 (388)
T PRK12723 251 QS------KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EIFHQFSPFSYKTVIFTKLD 323 (388)
T ss_pred Hh------CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HHHHHhcCCCCCEEEEEecc
Confidence 32 457899999999987553 35666777652 34677777765433 233 333333 245666776
Q ss_pred hhHHHHHHHHHHH
Q 036794 585 DADIIYTLQWIAS 597 (1152)
Q Consensus 585 ~~EI~eiL~~iak 597 (1152)
...-.-.+-.++.
T Consensus 324 et~~~G~~l~~~~ 336 (388)
T PRK12723 324 ETTCVGNLISLIY 336 (388)
T ss_pred CCCcchHHHHHHH
Confidence 6544333333333
|
|
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.01 Score=61.89 Aligned_cols=69 Identities=14% Similarity=0.213 Sum_probs=42.2
Q ss_pred CCceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEEEEEcCCC--CcchHHHHcc--ceEEEecCCChhHHHHHHHH
Q 036794 523 SQYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVFILVSSSL--DALPHIIISR--CQKFFFPKMKDADIIYTLQW 594 (1152)
Q Consensus 523 a~~kVVIIDEID~L---s~eaqnaLLklLEepp~~VifILaTN~~--dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~~ 594 (1152)
....+|+|||+..+ .....+.|..+++. ...+|++++.. ..+.+.|..+ +.++.+.+-+.+++...+..
T Consensus 95 ~~~~~lllDE~~~~e~~~~~~~~~l~~~~~~---~~~~i~v~h~~~~~~~~~~i~~~~~~~i~~~~~~~r~~~~~~~~~ 170 (174)
T PRK13695 95 EEADVIIIDEIGKMELKSPKFVKAVEEVLDS---EKPVIATLHRRSVHPFVQEIKSRPGGRVYELTPENRDSLPFEILN 170 (174)
T ss_pred CCCCEEEEECCCcchhhhHHHHHHHHHHHhC---CCeEEEEECchhhHHHHHHHhccCCcEEEEEcchhhhhHHHHHHH
Confidence 35689999997654 33345566666643 34666666653 2455566666 44677766666666655544
|
|
| >PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.0013 Score=76.84 Aligned_cols=43 Identities=28% Similarity=0.397 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
|..+...+.+++.. ..+..+.++||.|||||++.++|...+..
T Consensus 6 Q~~~~~~v~~~~~~-~~~~~~fv~G~~GtGKs~l~~~i~~~~~~ 48 (364)
T PF05970_consen 6 QRRVFDTVIEAIEN-EEGLNFFVTGPAGTGKSFLIKAIIDYLRS 48 (364)
T ss_pred HHHHHHHHHHHHHc-cCCcEEEEEcCCCCChhHHHHHHHHHhcc
Confidence 55677777777765 45567889999999999999999887754
|
The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ]. |
| >PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ] | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.005 Score=66.25 Aligned_cols=140 Identities=14% Similarity=0.188 Sum_probs=69.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC-------CCccceEEeCCCCCCC-HHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR-------GKSRNIKEVGPVGNFD-FESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~-------g~~~dviEIdaas~~~-vdeIreLle 514 (1152)
|..++|.||+|+||||++-.||..+..... ..+..|..+..+.. ....++-........+ .+.+.+.++
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~---~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~ 77 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGK---KVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALE 77 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT-----EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccc---cceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHH
Confidence 457899999999999999999887754311 11111111111100 0000010000000111 122233333
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCCEEEEEEcCCCCcchHHHH---cc--ceEEEecCCChh
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRRVVFILVSSSLDALPHIII---SR--CQKFFFPKMKDA 586 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~VifILaTN~~dkL~~aL~---SR--~qvI~F~~p~~~ 586 (1152)
.+.. .++.+||||-++..+.+ ....|.++++. .+..+.|++.++.-..-...+. +. ...+-|.++++.
T Consensus 78 ~~~~----~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet 153 (196)
T PF00448_consen 78 KFRK----KGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDET 153 (196)
T ss_dssp HHHH----TTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSS
T ss_pred HHhh----cCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCC
Confidence 3321 23479999999887644 34566666555 4667888888765432222222 22 234567777765
Q ss_pred HHH
Q 036794 587 DII 589 (1152)
Q Consensus 587 EI~ 589 (1152)
...
T Consensus 154 ~~~ 156 (196)
T PF00448_consen 154 ARL 156 (196)
T ss_dssp STT
T ss_pred CCc
Confidence 433
|
SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A .... |
| >PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0012 Score=76.71 Aligned_cols=24 Identities=38% Similarity=0.445 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.++++.|.||||||.+|-.+++.+
T Consensus 2 ~v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 2 QVILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred eEEEEEecCCcCHHHHHHHHHHHh
Confidence 368999999999999999999998
|
It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation []. |
| >PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.018 Score=68.39 Aligned_cols=149 Identities=11% Similarity=0.129 Sum_probs=86.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhh------CCCCEEEEEEcCCCC---cchHHHHcc-ceEEEecCCChhHHHHHHH
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDR------APRRVVFILVSSSLD---ALPHIIISR-CQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEe------pp~~VifILaTN~~d---kL~~aL~SR-~qvI~F~~p~~~EI~eiL~ 593 (1152)
.+-||+||.+..-... .+.+.+.|-+ ...-..+||.|++.. .|.++|-.+ +..|.+...+++.-..++.
T Consensus 148 ~~PVVVIdnF~~k~~~-~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV~ 226 (431)
T PF10443_consen 148 RRPVVVIDNFLHKAEE-NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYVL 226 (431)
T ss_pred cCCEEEEcchhccCcc-cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHHH
Confidence 3679999998665433 3344444433 223445666776654 355555555 3458888888888888887
Q ss_pred HHHHHc-CC-------------------CCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhH
Q 036794 594 WIASKE-GI-------------------EIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKL 653 (1152)
Q Consensus 594 ~iakke-Gl-------------------~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~i 653 (1152)
..+... .. ..+...++..+...+|-+.++.-+..++-. |.. -.+.|.+++.. ..
T Consensus 227 ~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiks-Ge~-p~~Av~~iI~q----sa 300 (431)
T PF10443_consen 227 SQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKS-GES-PEEAVEEIISQ----SA 300 (431)
T ss_pred HHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHc-CCC-HHHHHHHHHHH----HH
Confidence 777543 11 134556777778889999998888888754 321 12334444433 33
Q ss_pred HHHHHHHHc----------CCHHHHHHHHHHHHHhC
Q 036794 654 VDLLDLALS----------ADTVNTVKNLRVIMETG 679 (1152)
Q Consensus 654 fdLldAils----------~d~~~ALk~L~~LL~~G 679 (1152)
-++....+. ....+|..++..|-.++
T Consensus 301 ~eI~k~fl~~~~~~~~~~~Wt~~QaW~LIk~Ls~~~ 336 (431)
T PF10443_consen 301 SEIRKMFLLDDSDDAKSLKWTREQAWYLIKLLSKND 336 (431)
T ss_pred HHHHHHHhcCCCCcccCCCCCHHHHHHHHHHhccCC
Confidence 333333333 24455666666654443
|
It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA []. |
| >PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.022 Score=65.46 Aligned_cols=47 Identities=17% Similarity=0.227 Sum_probs=38.1
Q ss_pred EEEecCCChhHHHHHHHHHHHHcCC---CCCHHHHHHHHHhcCCCHHHHH
Q 036794 577 KFFFPKMKDADIIYTLQWIASKEGI---EIDKDALKLIASRSDGSLRDAE 623 (1152)
Q Consensus 577 vI~F~~p~~~EI~eiL~~iakkeGl---~Id~dALelLAe~s~GDLR~Ai 623 (1152)
.|.+++++.+|+...++......-+ ..++...+.+...++||++++.
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~~~~~~~~~e~~~~~s~GNp~el~ 307 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRSRVDEELVLEKLFLSSNGNPRELE 307 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCccccCCCCHHHHHHHHHhcCCCHHHhc
Confidence 7899999999999999888765433 3566778888888899999875
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29). |
| >PRK10536 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.013 Score=65.81 Aligned_cols=44 Identities=20% Similarity=0.178 Sum_probs=34.5
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
|..+.+.......+..++... ..++++||.|||||++|.+++..
T Consensus 54 ~~~i~p~n~~Q~~~l~al~~~---~lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 54 TSPILARNEAQAHYLKAIESK---QLIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred CccccCCCHHHHHHHHHHhcC---CeEEEECCCCCCHHHHHHHHHHH
Confidence 445666666666777777663 36899999999999999999885
|
|
| >PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.022 Score=67.42 Aligned_cols=144 Identities=13% Similarity=0.123 Sum_probs=72.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--------cccCCCccceEEeCCCCCCCHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI--------SHDRGKSRNIKEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~--------~i~~g~~~dviEIdaas~~~vdeIreLle 514 (1152)
+..++|.||.|+||||++..||..+........ ...+.... .+.......++. ..+...+.+.+.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVg--lI~aDt~RiaAvEQLk~yae~lgipv~v-----~~d~~~L~~aL~ 313 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG--FITTDHSRIGTVQQLQDYVKTIGFEVIA-----VRDEAAMTRALT 313 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEE--EEecCCcchHHHHHHHHHhhhcCCcEEe-----cCCHHHHHHHHH
Confidence 357899999999999999999987753211100 00000000 000000000111 123344555554
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhh-CCCCEEEEEEcCCC-CcchHHHHccce-----EEEecCCCh
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDR-APRRVVFILVSSSL-DALPHIIISRCQ-----KFFFPKMKD 585 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEe-pp~~VifILaTN~~-dkL~~aL~SR~q-----vI~F~~p~~ 585 (1152)
.+... .++.+||||-++.... .....|.++++. .|..++|++.++.- ..+. .+..++. .+-|.+++.
T Consensus 314 ~lk~~---~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~-~i~~~F~~~~idglI~TKLDE 389 (436)
T PRK11889 314 YFKEE---ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMI-EIITNFKDIHIDGIVFTKFDE 389 (436)
T ss_pred HHHhc---cCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHH-HHHHHhcCCCCCEEEEEcccC
Confidence 44211 2468999999988764 345677777765 33456666654322 2222 2333322 455666666
Q ss_pred hHHHHHHHHHHH
Q 036794 586 ADIIYTLQWIAS 597 (1152)
Q Consensus 586 ~EI~eiL~~iak 597 (1152)
....--+-.++.
T Consensus 390 T~k~G~iLni~~ 401 (436)
T PRK11889 390 TASSGELLKIPA 401 (436)
T ss_pred CCCccHHHHHHH
Confidence 543333333333
|
|
| >KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.77 E-value=0.0081 Score=73.69 Aligned_cols=52 Identities=19% Similarity=0.373 Sum_probs=35.5
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDT--LSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~--Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
++.++...|...+|.||||||+|. ++.+..-.||+-+-....+..+|+.+..
T Consensus 151 LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIimSAT 204 (674)
T KOG0922|consen 151 LLREILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLIIMSAT 204 (674)
T ss_pred HHHHHhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEEEeee
Confidence 566666778889999999999997 4556555555555544555555555443
|
|
| >KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.0025 Score=65.71 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.+|++|.||||||+++..||...+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~ 34 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLE 34 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCc
Confidence 3458999999999999999999887755
|
|
| >PRK14974 cell division protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.017 Score=67.14 Aligned_cols=27 Identities=37% Similarity=0.469 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+||+|+||||++..+|..+..
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~ 166 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKK 166 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999987653
|
|
| >TIGR01448 recD_rel helicase, putative, RecD/TraA family | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.0068 Score=76.97 Aligned_cols=105 Identities=18% Similarity=0.239 Sum_probs=55.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc-ceEEeCCCCCCCHHHHHHHHHHHhh----
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR-NIKEVGPVGNFDFESILDLLDNMVT---- 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~-dviEIdaas~~~vdeIreLle~a~~---- 518 (1152)
..++++|+||||||++++++...+....... ++. .|. ..+... .+.+. .......+..++.....
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~~~~~~~~--~v~---l~A--pTg~AA~~L~e~---~g~~a~Tih~lL~~~~~~~~~ 408 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELAEELGGLL--PVG---LAA--PTGRAAKRLGEV---TGLTASTIHRLLGYGPDTFRH 408 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCc--eEE---EEe--CchHHHHHHHHh---cCCccccHHHHhhccCCccch
Confidence 3689999999999999999988765431000 000 000 000000 00000 00001112222211000
Q ss_pred --CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 519 --SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 519 --~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
........+|||||+.|+....+..|++.+. ..+.+|++.
T Consensus 409 ~~~~~~~~~~llIvDEaSMvd~~~~~~Ll~~~~---~~~rlilvG 450 (720)
T TIGR01448 409 NHLEDPIDCDLLIVDESSMMDTWLALSLLAALP---DHARLLLVG 450 (720)
T ss_pred hhhhccccCCEEEEeccccCCHHHHHHHHHhCC---CCCEEEEEC
Confidence 0001346799999999999988888877653 456677765
|
This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD. |
| >PTZ00202 tuzin; Provisional | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.032 Score=66.70 Aligned_cols=53 Identities=25% Similarity=0.305 Sum_probs=43.5
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.|....+++|.+.....|..++... ..+..++|+||+|+|||++++.+...+.
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3555788999999999999888653 3345789999999999999999987654
|
|
| >PF08542 Rep_fac_C: Replication factor C C-terminal domain; InterPro: IPR013748 Replication factor C (RFC) is a multimeric AAA+ protein complex that loads the DNA polymerase processivity clamp PCNA (Proliferating Cell Nuclear Antigen) onto DNA using ATP to drive the reaction [] | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.028 Score=52.34 Aligned_cols=87 Identities=21% Similarity=0.257 Sum_probs=71.4
Q ss_pred cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHH
Q 036794 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLR 727 (1152)
Q Consensus 648 v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~ 727 (1152)
+++..+-++++.+.+++..++...+++|+..|.++..|+..|...+.. . .++.....
T Consensus 3 p~~~~i~~i~~~~~~~~~~~~~~~~~~l~~~G~s~~~Il~~l~~~l~~----------------------~-~~~~~~k~ 59 (89)
T PF08542_consen 3 PPPEVIEEILESCLNGDFKEARKKLYELLVEGYSASDILKQLHEVLVE----------------------S-DIPDSQKA 59 (89)
T ss_dssp --HHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--HHHHHHHHHHHHHT----------------------S-TSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----------------------h-hccHHHHH
Confidence 456778889999999999999999999999999999999999887652 1 44556677
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHc
Q 036794 728 QALKTLSEAEKQLRMSNDKLTWLTAALLQL 757 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~s~dprl~LE~lLLkL 757 (1152)
+++..++++|..|..|.++.+.|+.++.++
T Consensus 60 ~i~~~la~~e~rl~~G~~e~lQl~alva~~ 89 (89)
T PF08542_consen 60 EILKILAEIEYRLSDGASEILQLEALVAAF 89 (89)
T ss_dssp HHHHHHHHHHHHHHTTC-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHCCCCHHHHHHHHHhhC
Confidence 889999999999999999999999998764
|
PCNA functions at multiple levels in directing DNA metabolic pathways []. When bound to DNA, PCNA organises various proteins involved in DNA replication, DNA repair, DNA modification, and chromatin modelling. Replication factor C consists of five subunits in a spiral arrangement: Rfc1, Rfc2, Rfc3, Rfc4, and Rfc5 subunits. Rfc1 and Rfc2 load the PCNA sliding clamp onto DNA, while Rfc3 binds ATP and also acts as a checkpoint sensor. The RFC complex contains four ATP sites (sites A, B, C, and D) located at subunit interfaces. In each ATP site, an arginine residue from one subunit is located near the gamma-phosphate of ATP bound in the adjacent subunit. These arginine residues act as "arginine fingers" that can potentially perform two functions: sensing that ATP is bound and catalyzing ATP hydrolysis []. This entry represents the core domain found in Rfc1-5.; GO: 0003689 DNA clamp loader activity, 0005524 ATP binding, 0006260 DNA replication, 0005663 DNA replication factor C complex; PDB: 1SXJ_B 2CHG_B 2CHV_F 2CHQ_C 1IQP_A. |
| >PF13479 AAA_24: AAA domain | Back alignment and domain information |
|---|
Probab=96.62 E-value=0.0036 Score=67.83 Aligned_cols=75 Identities=25% Similarity=0.461 Sum_probs=44.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc--ceEEeCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR--NIKEVGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~--dviEIdaas~~~vdeIreLle~a~~~P~ 521 (1152)
.-+|||||||+|||++|..+-+-+. .....|... .....+...-..++++.+.++.+...
T Consensus 4 ~~~lIyG~~G~GKTt~a~~~~k~l~----------------id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~-- 65 (213)
T PF13479_consen 4 IKILIYGPPGSGKTTLAASLPKPLF----------------IDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEED-- 65 (213)
T ss_pred eEEEEECCCCCCHHHHHHhCCCeEE----------------EEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhc--
Confidence 4589999999999999998832221 111222100 00001111113678888877665333
Q ss_pred CCCceEEEEeCCCCC
Q 036794 522 PSQYRIFVFDDCDTL 536 (1152)
Q Consensus 522 ~a~~kVVIIDEID~L 536 (1152)
...+.+||||-++.+
T Consensus 66 ~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 66 EADYDTIVIDSISWL 80 (213)
T ss_pred cCCCCEEEEECHHHH
Confidence 367899999988765
|
|
| >PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.038 Score=66.21 Aligned_cols=135 Identities=13% Similarity=0.171 Sum_probs=65.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCCCCCCCcccccc----CCCccceEEeCCCCCCCHHHHHHHHHHHhh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKPCGFCNSCISHD----RGKSRNIKEVGPVGNFDFESILDLLDNMVT 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~epcg~c~~c~~i~----~g~~~dviEIdaas~~~vdeIreLle~a~~ 518 (1152)
..++|.||+|+||||++..||..+. ...... .+.......... ...+.....+........+++...+..+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~--V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-- 297 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKK--VALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-- 297 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCe--EEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh--
Confidence 4789999999999999999987764 211000 000000000000 0000000000000011223344444433
Q ss_pred CCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh--CCCCEEEEEEcCCCCcchHHHHccce-----EEEecCCChh
Q 036794 519 SRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR--APRRVVFILVSSSLDALPHIIISRCQ-----KFFFPKMKDA 586 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe--pp~~VifILaTN~~dkL~~aL~SR~q-----vI~F~~p~~~ 586 (1152)
..+.+||||..+....+ ....|..+++. .+..+.+|+.++.-..-...+..++. .+-|..++..
T Consensus 298 ----~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet 370 (424)
T PRK05703 298 ----RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDET 370 (424)
T ss_pred ----CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEeccccc
Confidence 35689999999876543 44567777762 34566777776543322222333322 3445555554
|
|
| >TIGR01447 recD exodeoxyribonuclease V, alpha subunit | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0082 Score=74.48 Aligned_cols=36 Identities=17% Similarity=0.340 Sum_probs=28.1
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
...+|||||+.|+.......|++.+ +..+.+|++..
T Consensus 259 ~~dvlIiDEaSMvd~~l~~~ll~al---~~~~rlIlvGD 294 (586)
T TIGR01447 259 PLDVLVVDEASMVDLPLMAKLLKAL---PPNTKLILLGD 294 (586)
T ss_pred cccEEEEcccccCCHHHHHHHHHhc---CCCCEEEEECC
Confidence 4579999999999998877777765 45677777754
|
This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model. |
| >PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.011 Score=63.70 Aligned_cols=102 Identities=26% Similarity=0.304 Sum_probs=67.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
..+++|.|+.|+|||++.+.|........ +... .+-+....+...
T Consensus 52 d~~lvl~G~QG~GKStf~~~L~~~~~~d~-----------------------~~~~-----~~kd~~~~l~~~------- 96 (198)
T PF05272_consen 52 DTVLVLVGKQGIGKSTFFRKLGPEYFSDS-----------------------INDF-----DDKDFLEQLQGK------- 96 (198)
T ss_pred ceeeeEecCCcccHHHHHHHHhHHhccCc-----------------------cccC-----CCcHHHHHHHHh-------
Confidence 35789999999999999999965532211 0000 111222222222
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhh---------------CCCCEEEEEEcCCCCcchH-HHHccceEEEecC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDR---------------APRRVVFILVSSSLDALPH-IIISRCQKFFFPK 582 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEe---------------pp~~VifILaTN~~dkL~~-aL~SR~qvI~F~~ 582 (1152)
-+|.|||++.+.....+.|..++-. .+...+||++||+.+-|.. +=-+|+-.|.+..
T Consensus 97 ---~iveldEl~~~~k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~~v~v~~ 169 (198)
T PF05272_consen 97 ---WIVELDELDGLSKKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFWPVEVSK 169 (198)
T ss_pred ---HheeHHHHhhcchhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEEEEEEcC
Confidence 5889999999998888888877754 3467889999998774433 4456777777766
|
|
| >PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.048 Score=63.55 Aligned_cols=49 Identities=27% Similarity=0.442 Sum_probs=39.3
Q ss_pred CcC-cccCcHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 419 TFR-DLVGQNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 419 sFd-dLVGQe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.|+ ++.|.++.+..|.+.++. +.-...+||.||.|+|||++++.|.+.+
T Consensus 58 ~f~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 58 FFEDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred CccccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 466 799999888777766654 2334589999999999999999998865
|
PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical. |
| >TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.012 Score=75.13 Aligned_cols=101 Identities=17% Similarity=0.225 Sum_probs=57.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC----------CCCHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG----------NFDFESILDLL 513 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas----------~~~vdeIreLl 513 (1152)
..++|+|++|||||++++++...+...... +..+.+.+ ......+..++
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~---------------------V~~~ApTg~Aa~~L~~~~g~~a~Ti~~~~ 427 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYR---------------------VIGAALSGKAAEGLQAESGIESRTLASLE 427 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCe---------------------EEEEeCcHHHHHHHHhccCCceeeHHHHH
Confidence 367899999999999999998765432110 11111100 00011122222
Q ss_pred HHHh-hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcch
Q 036794 514 DNMV-TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALP 568 (1152)
Q Consensus 514 e~a~-~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~ 568 (1152)
.... .........+|||||+.|+....+..|++..... ...+||+. +++.|+
T Consensus 428 ~~~~~~~~~~~~~~llIvDEasMv~~~~~~~Ll~~~~~~--~~kliLVG-D~~QLp 480 (744)
T TIGR02768 428 YAWANGRDLLSDKDVLVIDEAGMVGSRQMARVLKEAEEA--GAKVVLVG-DPEQLQ 480 (744)
T ss_pred hhhccCcccCCCCcEEEEECcccCCHHHHHHHHHHHHhc--CCEEEEEC-ChHHcc
Confidence 1111 1122346789999999999998888888766653 44555554 333343
|
This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer. |
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.017 Score=68.04 Aligned_cols=25 Identities=32% Similarity=0.592 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..|+|.||+|+||||++..||..+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999999875
|
|
| >PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0043 Score=72.70 Aligned_cols=127 Identities=15% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
..+.+++|||+.|+|||.+.-.+...+....... ..+. .+....+..+.... ...+-+..+.+.+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R---~HFh----~Fm~~vh~~l~~~~----~~~~~l~~va~~l~--- 125 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRR---VHFH----EFMLDVHSRLHQLR----GQDDPLPQVADELA--- 125 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccc---cccc----HHHHHHHHHHHHHh----CCCccHHHHHHHHH---
Confidence 3456899999999999999999987765421100 0000 00000000011110 01112333333332
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhh-CCCCEEEEEEcCCCC-c-------------chHHHHccceEEEecCC
Q 036794 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDR-APRRVVFILVSSSLD-A-------------LPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-pp~~VifILaTN~~d-k-------------L~~aL~SR~qvI~F~~p 583 (1152)
....||.+||++--.....-.|-++++. ....+++|+++|.+. . ....|..+|.++.+...
T Consensus 126 --~~~~lLcfDEF~V~DiaDAmil~rLf~~l~~~gvvlVaTSN~~P~~Ly~~gl~r~~Flp~I~~l~~~~~vv~ld~~ 201 (362)
T PF03969_consen 126 --KESRLLCFDEFQVTDIADAMILKRLFEALFKRGVVLVATSNRPPEDLYKNGLQRERFLPFIDLLKRRCDVVELDGG 201 (362)
T ss_pred --hcCCEEEEeeeeccchhHHHHHHHHHHHHHHCCCEEEecCCCChHHHcCCcccHHHHHHHHHHHHhceEEEEecCC
Confidence 3457999999876543322223333333 236888888888532 1 23357889999888765
|
AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding |
| >PRK09435 membrane ATPase/protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.11 Score=60.61 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
...+..+-|+|+||+||||++..+...+..
T Consensus 53 ~~~~~~igi~G~~GaGKSTl~~~l~~~l~~ 82 (332)
T PRK09435 53 TGNALRIGITGVPGVGKSTFIEALGMHLIE 82 (332)
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345668999999999999999999888764
|
|
| >PRK00771 signal recognition particle protein Srp54; Provisional | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.26 Score=59.42 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|+|++|+||||++..+|..+..
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~ 121 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKK 121 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3568999999999999999999988754
|
|
| >PRK10875 recD exonuclease V subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=96.35 E-value=0.013 Score=73.00 Aligned_cols=35 Identities=11% Similarity=0.298 Sum_probs=27.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+|||||+.|+.......|++.+ +.++.+|++..
T Consensus 266 ~dvlIvDEaSMvd~~lm~~ll~al---~~~~rlIlvGD 300 (615)
T PRK10875 266 LDVLVVDEASMVDLPMMARLIDAL---PPHARVIFLGD 300 (615)
T ss_pred CCeEEEChHhcccHHHHHHHHHhc---ccCCEEEEecc
Confidence 479999999999988888777765 45677777764
|
|
| >PRK13889 conjugal transfer relaxase TraA; Provisional | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.011 Score=76.87 Aligned_cols=104 Identities=16% Similarity=0.179 Sum_probs=55.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPPS 523 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~a 523 (1152)
.++|+|.+|||||++.+++...+....... ..| +. .+... ..+..........|..++.... ......
T Consensus 364 v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V-------~~~-Ap-TGkAA--~~L~e~tGi~a~TI~sll~~~~~~~~~l~ 432 (988)
T PRK13889 364 LGVVVGYAGTGKSAMLGVAREAWEAAGYEV-------RGA-AL-SGIAA--ENLEGGSGIASRTIASLEHGWGQGRDLLT 432 (988)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeE-------EEe-cC-cHHHH--HHHhhccCcchhhHHHHHhhhcccccccc
Confidence 568999999999999988876654221000 000 00 00000 0000000111122333322111 111234
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
...||||||+.|+....+..|++..+.. .+.+||+.
T Consensus 433 ~~~vlIVDEASMv~~~~m~~LL~~a~~~--garvVLVG 468 (988)
T PRK13889 433 SRDVLVIDEAGMVGTRQLERVLSHAADA--GAKVVLVG 468 (988)
T ss_pred cCcEEEEECcccCCHHHHHHHHHhhhhC--CCEEEEEC
Confidence 5679999999999999888888877764 44555554
|
|
| >KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.26 E-value=0.023 Score=72.87 Aligned_cols=179 Identities=15% Similarity=0.169 Sum_probs=105.9
Q ss_pred cCcccCc-HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe
Q 036794 420 FRDLVGQ-NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV 498 (1152)
Q Consensus 420 FddLVGQ-e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI 498 (1152)
++-++|. ++-++.+.+.+.+....+ -+|.|++|+|||.++.-+++.+.....+.. ..-..+..+..+. +
T Consensus 185 ldPvigr~deeirRvi~iL~Rrtk~N-PvLVG~~gvgktaiv~gla~ri~~G~vp~~---l~~~~l~~l~~g~------l 254 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRKTKNN-PVLVGEPGVGKTAIVEGLAQRIATGDVPET---LKDKKLIALDFGS------L 254 (898)
T ss_pred CCCccCCchHHHHHHHHHHhccCCCC-ceEEecCCCCchhHHHHHHHHhhcCCCCcc---ccccceEEEEhhh------c
Confidence 5678887 655555555555544433 478999999999999999998765543321 0011112222221 0
Q ss_pred CCCCCCCHHH----HHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------HHHHHHHHHhhCCCCEEEEEEcCCCC-
Q 036794 499 GPVGNFDFES----ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------SWSAISKVVDRAPRRVVFILVSSSLD- 565 (1152)
Q Consensus 499 daas~~~vde----IreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------aqnaLLklLEepp~~VifILaTN~~d- 565 (1152)
.++.....+ +.+++..+.. .+.+-|+||||+|.+... +.+.|...|.. ..+.+|.+|+.-.
T Consensus 255 -~aGa~~rge~E~rlk~l~k~v~~---~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~r--g~l~~IGatT~e~Y 328 (898)
T KOG1051|consen 255 -VAGAKRRGEFEERLKELLKEVES---GGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLAR--GGLWCIGATTLETY 328 (898)
T ss_pred -ccCcccchHHHHHHHHHHHHHhc---CCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhc--CCeEEEecccHHHH
Confidence 112222233 4444444432 356678999999998433 23333333333 3389999887321
Q ss_pred ----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHh
Q 036794 566 ----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASR 614 (1152)
Q Consensus 566 ----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~ 614 (1152)
.-.|++-+|++.+.++.|+..+...+|...... .|..+.+.++...+..
T Consensus 329 ~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~ 385 (898)
T KOG1051|consen 329 RKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQL 385 (898)
T ss_pred HHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccch
Confidence 245679999999888889887766666655444 4556666665444433
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.011 Score=64.24 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|+||.|.|||++.+.++.
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5689999999999999999984
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >smart00487 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.0056 Score=62.14 Aligned_cols=41 Identities=17% Similarity=0.348 Sum_probs=25.1
Q ss_pred CceEEEEeCCCCCCH-HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 524 QYRIFVFDDCDTLSP-DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~-eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+|||||+|.+.. .....+..++...+....+|+.|..+
T Consensus 129 ~~~~iIiDE~h~~~~~~~~~~~~~~~~~~~~~~~~v~~saT~ 170 (201)
T smart00487 129 NVDLVILDEAHRLLDGGFGDQLEKLLKLLPKNVQLLLLSATP 170 (201)
T ss_pred HCCEEEEECHHHHhcCCcHHHHHHHHHhCCccceEEEEecCC
Confidence 456999999999986 44444445555433444445555444
|
|
| >PRK08118 topology modulation protein; Reviewed | Back alignment and domain information |
|---|
Probab=96.21 E-value=0.098 Score=54.81 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=24.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+++.||+|+||||+|+.|++.++...
T Consensus 4 I~I~G~~GsGKSTlak~L~~~l~~~~ 29 (167)
T PRK08118 4 IILIGSGGSGKSTLARQLGEKLNIPV 29 (167)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 78999999999999999999998764
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.015 Score=62.66 Aligned_cols=24 Identities=17% Similarity=0.209 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||.|+||||+.+.++..+
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~~ 49 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVNV 49 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 578999999999999999998644
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.0043 Score=60.11 Aligned_cols=26 Identities=31% Similarity=0.588 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.|+|+|+||+||||+|+.|++.+++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~ 26 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFP 26 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 47899999999999999999998754
|
... |
| >PRK13826 Dtr system oriT relaxase; Provisional | Back alignment and domain information |
|---|
Probab=96.18 E-value=0.023 Score=74.54 Aligned_cols=95 Identities=15% Similarity=0.203 Sum_probs=55.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC----------CCCHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG----------NFDFESILDLL 513 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas----------~~~vdeIreLl 513 (1152)
...++.|++|||||++.+++...+...... ++-+.+.+ ......|..++
T Consensus 398 r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~---------------------V~g~ApTgkAA~~L~e~~Gi~a~TIas~l 456 (1102)
T PRK13826 398 RIAAVVGRAGAGKTTMMKAAREAWEAAGYR---------------------VVGGALAGKAAEGLEKEAGIQSRTLSSWE 456 (1102)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCe---------------------EEEEcCcHHHHHHHHHhhCCCeeeHHHHH
Confidence 467999999999999999998765432110 11111110 00111122211
Q ss_pred HHHh-hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 514 DNMV-TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 514 e~a~-~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
.... .........||||||+.|+.......|++.++.....++||.
T Consensus 457 l~~~~~~~~l~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVLVG 503 (1102)
T PRK13826 457 LRWNQGRDQLDNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVLVG 503 (1102)
T ss_pred hhhccCccCCCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEEEC
Confidence 1110 011123467999999999999999999988876444444444
|
|
| >PRK12724 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.039 Score=65.86 Aligned_cols=150 Identities=11% Similarity=0.160 Sum_probs=70.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEEeCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKEVGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviEIdaas~~~vdeIreLle~a~~~P~ 521 (1152)
+..++|.||+|+||||++..||..+....... .+............. ...+.+...........+.++.+.+.
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~--V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~---- 296 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKS--VSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLA---- 296 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHhcCCe--EEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHH----
Confidence 34689999999999999999997653211000 000000000000000 00000000000011222334444432
Q ss_pred CCCceEEEEeCCCCCC--HHHHHHHHHHHhh----CCCCEEEEEEcCCCCcchHHHHccce-----EEEecCCChhHHHH
Q 036794 522 PSQYRIFVFDDCDTLS--PDSWSAISKVVDR----APRRVVFILVSSSLDALPHIIISRCQ-----KFFFPKMKDADIIY 590 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls--~eaqnaLLklLEe----pp~~VifILaTN~~dkL~~aL~SR~q-----vI~F~~p~~~EI~e 590 (1152)
...+.+||||=++..+ ......|.+++.. .+..++||+.++.-..-...+..++. .+-|.+++...-.-
T Consensus 297 ~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G 376 (432)
T PRK12724 297 RDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376 (432)
T ss_pred hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCcc
Confidence 1456899999877764 3445566666653 24567777776654322222333332 36667777654333
Q ss_pred HHHHHHHH
Q 036794 591 TLQWIASK 598 (1152)
Q Consensus 591 iL~~iakk 598 (1152)
-+-.++..
T Consensus 377 ~il~i~~~ 384 (432)
T PRK12724 377 SFLELADT 384 (432)
T ss_pred HHHHHHHH
Confidence 33333333
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.14 E-value=0.013 Score=72.24 Aligned_cols=119 Identities=16% Similarity=0.173 Sum_probs=68.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc--------cCCCccceEEe-CCCCCCCHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH--------DRGKSRNIKEV-GPVGNFDFESILDLL 513 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i--------~~g~~~dviEI-daas~~~vdeIreLl 513 (1152)
+.-+|+.||+|+|||++.|+||.---........| ..|..+ ..|.-++.+-. +.....+-+++.+++
T Consensus 419 G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P----~~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL 494 (604)
T COG4178 419 GERLLITGESGAGKTSLLRALAGLWPWGSGRISMP----ADSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVL 494 (604)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccCccCCCceecC----CCCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHH
Confidence 34689999999999999999987543332222222 111111 11111111111 111113334444443
Q ss_pred HHHhhCC----------------------------CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 514 DNMVTSR----------------------------PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 514 e~a~~~P----------------------------~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+.... ...+++++||||+- .|.++....|++.|++.-+++.+|-++..+
T Consensus 495 ~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~ 574 (604)
T COG4178 495 HKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRP 574 (604)
T ss_pred HHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccch
Confidence 3321100 01357899999984 567888899999999966788888888765
Q ss_pred C
Q 036794 565 D 565 (1152)
Q Consensus 565 d 565 (1152)
.
T Consensus 575 t 575 (604)
T COG4178 575 T 575 (604)
T ss_pred h
Confidence 4
|
|
| >cd00046 DEXDc DEAD-like helicases superfamily | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.015 Score=55.33 Aligned_cols=25 Identities=28% Similarity=0.230 Sum_probs=21.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++++||+|+|||+++-.++..+..
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~ 26 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLD 26 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHh
Confidence 4789999999999999888887654
|
A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region. |
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.026 Score=58.08 Aligned_cols=25 Identities=32% Similarity=0.511 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+|++|+||||+|+.|++.+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999987
|
|
| >KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.06 E-value=0.032 Score=75.71 Aligned_cols=144 Identities=18% Similarity=0.305 Sum_probs=90.4
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEE------eCCCCCC
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE------VGPVGNF 504 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE------Idaas~~ 504 (1152)
..+..++..++.+ +||.||.|+|||+++.-+|++.+..... ++.-.+.++.+ .+..+..
T Consensus 430 a~~~~a~~~~~~p--illqG~tssGKtsii~~la~~~g~~~vr-------------innhehtd~qeyig~y~~~~~g~l 494 (1856)
T KOG1808|consen 430 ADLARAISSGKFP--ILLQGPTSSGKTSIIKELARATGKNIVR-------------INNHEHTDLQEYIGTYVADDNGDL 494 (1856)
T ss_pred HHHHHHHhcCCCC--eEEecCcCcCchhHHHHHHHHhccCcee-------------hhccccchHHHHHHhhhcCCCCCe
Confidence 3444555567666 8999999999999999999998765332 22222222211 1122222
Q ss_pred CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----CCCCEE--------EEEEcCCCC------
Q 036794 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----APRRVV--------FILVSSSLD------ 565 (1152)
Q Consensus 505 ~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----pp~~Vi--------fILaTN~~d------ 565 (1152)
.+... -++..+ -++..+|+||++..+.+.+++|.++++. .|.... .+++|-++.
T Consensus 495 ~freg-~LV~Al------r~G~~~vlD~lnla~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~~~~y~gr 567 (1856)
T KOG1808|consen 495 VFREG-VLVQAL------RNGDWIVLDELNLAPHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNPPGTYGGR 567 (1856)
T ss_pred eeehh-HHHHHH------HhCCEEEeccccccchHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccCccccchh
Confidence 22221 133333 2357999999999999999999999987 222222 234443332
Q ss_pred -cchHHHHccceEEEecCCChhHHHHHHHHHH
Q 036794 566 -ALPHIIISRCQKFFFPKMKDADIIYTLQWIA 596 (1152)
Q Consensus 566 -kL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia 596 (1152)
.+..++.+|+..++|-.+.++++..++...+
T Consensus 568 k~lsRa~~~rf~e~~f~~~~e~e~~~i~~~~~ 599 (1856)
T KOG1808|consen 568 KILSRALRNRFIELHFDDIGEEELEEILEHRC 599 (1856)
T ss_pred hhhhhcccccchhhhhhhcCchhhhhhhcccc
Confidence 2555678888888888888887777665443
|
|
| >COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.015 Score=62.94 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=23.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|+||+|||++|+.+|++|...
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHHHh
Confidence 57999999999999999999998755
|
|
| >COG2842 Uncharacterized ATPase, putative transposase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.019 Score=65.07 Aligned_cols=197 Identities=17% Similarity=0.135 Sum_probs=104.2
Q ss_pred CcCcccCcHHH---HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLVGQNLV---AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLVGQe~v---~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
.-.++++-..+ +..+.-+-+.|. ...+||-+|.|||..++-+++.-.........||.........
T Consensus 70 ~~~~~l~tkt~r~~~~~~~~A~k~g~---l~~vyg~~g~gKt~a~~~y~~s~p~~~l~~~~p~~~a~~~i~~-------- 138 (297)
T COG2842 70 LAPDFLETKTVRRIFFRTRPASKTGS---LVVVYGYAGLGKTQAAKNYAPSNPNALLIEADPSYTALVLILI-------- 138 (297)
T ss_pred ccccccccchhHhHhhhhhhhhhcCc---eEEEeccccchhHHHHHhhcccCccceeecCChhhHHHHHHHH--------
Confidence 34567776554 333444444444 5789999999999999999876433322222333321111000
Q ss_pred EEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC------CCcchH
Q 036794 496 KEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS------LDALPH 569 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~------~dkL~~ 569 (1152)
.+.+ ........+.+.+......- ....++|++||++.|+..+++.|.+..++.+..+++|..-.- +.....
T Consensus 139 i~~~-~~~~~~~~~~d~~~~~~~~l-~~~~~~iivDEA~~L~~~ale~lr~i~d~~Gi~~vLvG~prL~~~l~~~~~~~~ 216 (297)
T COG2842 139 ICAA-AFGATDGTINDLTERLMIRL-RDTVRLIIVDEADRLPYRALEELRRIHDKTGIGVVLVGMPRLFKVLRRPEDELS 216 (297)
T ss_pred HHHH-HhcccchhHHHHHHHHHHHH-ccCcceeeeehhhccChHHHHHHHHHHHhhCceEEEecChHHHhccccchHHHH
Confidence 0000 00011112222222221111 356789999999999999999999999986544444443221 111111
Q ss_pred HHHccceE---EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 570 IIISRCQK---FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 570 aL~SR~qv---I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
.+.+|..+ +...-++..++.....+... .++++.+..+.....|++|.+...+......
T Consensus 217 rl~srv~v~~~~~~~~~d~d~~~~~~~~~l~----~~~~~~v~~~~~~~~g~~~~L~~~l~~~~~~ 278 (297)
T COG2842 217 RLYSRVRVGKLLGEKFPDADELAEIAALVLP----TEDELVLMQVIKETEGNIRRLDKILAGAVGT 278 (297)
T ss_pred HHHHHhhhHhhhhhhhhhhHHHHHHHHhhCc----cchHHHHHHHHHhcchhHhHHHHHHhhhhhh
Confidence 23333321 11111222333333332221 2567777777888899999988887765443
|
|
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.096 Score=54.60 Aligned_cols=25 Identities=16% Similarity=0.262 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+||||+||||+|+.||+.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~ 26 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT 26 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe
Confidence 7899999999999999999998754
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=95.98 E-value=0.061 Score=54.75 Aligned_cols=101 Identities=17% Similarity=0.191 Sum_probs=59.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHH--HHHHhhCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDL--LDNMVTSR 520 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreL--le~a~~~P 520 (1152)
+..+.|.||.|+||||++++++..+..... ...++ +. ..+..+.. ....+.+.+ ...+.
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-----------~i~~~-~~-~~i~~~~~---lS~G~~~rv~laral~--- 86 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELEPDEG-----------IVTWG-ST-VKIGYFEQ---LSGGEKMRLALAKLLL--- 86 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCCCCce-----------EEEEC-Ce-EEEEEEcc---CCHHHHHHHHHHHHHh---
Confidence 346899999999999999999765432110 01111 00 11222211 222333322 22222
Q ss_pred CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 521 PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 521 ~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.+..++++||.. .+.......|.++|.+. ...+|++|++++.
T Consensus 87 --~~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~ 129 (144)
T cd03221 87 --ENPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYF 129 (144)
T ss_pred --cCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHH
Confidence 455799999975 56777777888888775 2467777777653
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.024 Score=59.34 Aligned_cols=45 Identities=13% Similarity=0.232 Sum_probs=33.1
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
.+++++++||.- .|.......|.+.|.+......+|++|++++.+
T Consensus 115 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 160 (178)
T cd03247 115 QDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGI 160 (178)
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHH
Confidence 456899999975 467777778888887654456788888877643
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion] | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.14 Score=60.75 Aligned_cols=68 Identities=13% Similarity=0.220 Sum_probs=43.4
Q ss_pred CCceEEEEeCCCCCCHHH--HHHHHHHHhh-CCCCEEEEEEcCCCCcchHHHHccce-----EEEecCCChhHHHH
Q 036794 523 SQYRIFVFDDCDTLSPDS--WSAISKVVDR-APRRVVFILVSSSLDALPHIIISRCQ-----KFFFPKMKDADIIY 590 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea--qnaLLklLEe-pp~~VifILaTN~~dkL~~aL~SR~q-----vI~F~~p~~~EI~e 590 (1152)
..+.+|+||=+++-..+. ...|-.+++. .+..+.|++.++.-..-...+..++. -+-|.++++..-..
T Consensus 280 ~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~G 355 (407)
T COG1419 280 RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSLG 355 (407)
T ss_pred hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHHHHHhccCCcceeEEEcccccCchh
Confidence 456899999998865443 3455556554 45688888888876655555666554 24566666554333
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.021 Score=63.40 Aligned_cols=54 Identities=11% Similarity=0.266 Sum_probs=39.8
Q ss_pred CCceEEEEeCC-CCCCHHHHHHHHHHHhh---CCCCEEEEEEcCCCCcchHHHHccce
Q 036794 523 SQYRIFVFDDC-DTLSPDSWSAISKVVDR---APRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 523 a~~kVVIIDEI-D~Ls~eaqnaLLklLEe---pp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..+.++||||. ..|...+...|+++|++ .+...-+|++|...+.+++-+..++.
T Consensus 188 ~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~ll 245 (257)
T COG1119 188 KDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLL 245 (257)
T ss_pred cCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEE
Confidence 45789999995 55666777788888887 34467788889988888885544433
|
|
| >PRK12727 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.90 E-value=0.083 Score=64.74 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+.|+||.|+||||++..|+..+.
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la 375 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFA 375 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999999987653
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.033 Score=57.90 Aligned_cols=41 Identities=12% Similarity=0.241 Sum_probs=31.1
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+.+++++||.-. |.......|.++|.+. ...+|++|++++
T Consensus 108 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~ 149 (166)
T cd03223 108 HKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPS 149 (166)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChh
Confidence 4568999999754 6777788888888875 356777888765
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.032 Score=58.01 Aligned_cols=22 Identities=41% Similarity=0.400 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+|++||||+|||+++..++...
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHH
Confidence 7899999999999999887764
|
A related protein is found in archaea. |
| >TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.14 Score=58.42 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=77.6
Q ss_pred cCcccC-cHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 420 FRDLVG-QNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 420 FddLVG-Qe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
+.++.+ .++.+..|.+++.. ......++|+|+.|+||+++...|.+.++....... ....
T Consensus 47 L~~~~~~d~~~~~~l~~~lg~~L~~~~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~---------~~~~----- 112 (304)
T TIGR01613 47 LLETFGGDNELIEYLQRVIGYSLTGNYTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAV---------ASLK----- 112 (304)
T ss_pred HHHHhCCCHHHHHHHHHHHhHHhcCCCCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCC---------cchh-----
Confidence 455554 44567777776643 334458999999999999999999877764321000 0000
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------------CCCCEEEEE
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------------APRRVVFIL 559 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------------pp~~VifIL 559 (1152)
+..++. ..+... .+ ....++++||++.-.....+.|..+... ......+|+
T Consensus 113 -~~~~~~-~~f~~a-------~l------~gk~l~~~~E~~~~~~~~~~~lK~lt~gd~i~~~~k~k~~~~~~~~~~~i~ 177 (304)
T TIGR01613 113 -MNEFQE-HRFGLA-------RL------EGKRAVIGDEVQKGYRDDESTFKSLTGGDTITARFKNKDPFEFTPKFTLVQ 177 (304)
T ss_pred -hhhccC-CCchhh-------hh------cCCEEEEecCCCCCccccHHhhhhhhcCCeEEeecccCCcEEEEEeeEEEE
Confidence 000000 011110 11 3457999999875322222334333322 124667899
Q ss_pred EcCCCCcc---hHHHHccceEEEecC
Q 036794 560 VSSSLDAL---PHIIISRCQKFFFPK 582 (1152)
Q Consensus 560 aTN~~dkL---~~aL~SR~qvI~F~~ 582 (1152)
+||++..+ ..++.+|+.+|.|+.
T Consensus 178 ~tN~~P~~~~~~~a~~RR~~vi~f~~ 203 (304)
T TIGR01613 178 STNHLPRIRGFDGGIKRRLRIIPFTK 203 (304)
T ss_pred EcCCCCccCCCChhheeeEEEEeccC
Confidence 99986544 457899999999875
|
This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus. |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.15 Score=53.71 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=23.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|.||||+||||+|+.||+.+++..
T Consensus 3 i~~~G~pGsGKsT~a~~la~~~g~~~ 28 (188)
T PRK14532 3 LILFGPPAAGKGTQAKRLVEERGMVQ 28 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 78999999999999999999987654
|
|
| >PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot) | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.022 Score=60.77 Aligned_cols=60 Identities=18% Similarity=0.344 Sum_probs=37.7
Q ss_pred CceEEEEeCCCCCCHH-HH-----HHHHHHHhhC-CCCEEEEEEcCCCCcchHHHHccceE-EEecCC
Q 036794 524 QYRIFVFDDCDTLSPD-SW-----SAISKVVDRA-PRRVVFILVSSSLDALPHIIISRCQK-FFFPKM 583 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~e-aq-----naLLklLEep-p~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p 583 (1152)
...+||||||+..-+. .. ...+++|... ....-||++|-++..+++.++..++. +.+..+
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~~~l~~hRh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEIIEFLAQHRHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHHHGGGGCCCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred CCcEEEEECChhhcCCCccccccchHHHHHHHHhCcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 5689999999976322 11 2444777663 35788999999999999989887763 444443
|
Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B. |
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=95.80 E-value=0.01 Score=66.29 Aligned_cols=26 Identities=23% Similarity=0.259 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
-++|.||+|+|||++++.+++.+...
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhccccc
Confidence 57999999999999999999887643
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.16 Score=57.42 Aligned_cols=152 Identities=13% Similarity=0.203 Sum_probs=80.1
Q ss_pred cccCcHHHHHHHHHHHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 422 DLVGQNLVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
+||--+++++.+....+- ...+| .||.|..|+||.++++..|--.++. ++++.
T Consensus 9 ~lVlf~~ai~hi~ri~RvL~~~~Gh-~LLvG~~GsGr~sl~rLaa~i~~~~------------------------~~~i~ 63 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRVLSQPRGH-ALLVGVGGSGRQSLARLAAFICGYE------------------------VFQIE 63 (268)
T ss_dssp -----HHHHHHHHHHHHHHCSTTEE-EEEECTTTSCHHHHHHHHHHHTTEE------------------------EE-TT
T ss_pred ceeeHHHHHHHHHHHHHHHcCCCCC-eEEecCCCccHHHHHHHHHHHhccc------------------------eEEEE
Confidence 455556666666544332 22234 6899999999999999776655443 44444
Q ss_pred CCCCCCHHHHHHHHHHH-hhCCCCCCceEEEEeCCCCCCHHHHH---------------------HHH------------
Q 036794 500 PVGNFDFESILDLLDNM-VTSRPPSQYRIFVFDDCDTLSPDSWS---------------------AIS------------ 545 (1152)
Q Consensus 500 aas~~~vdeIreLle~a-~~~P~~a~~kVVIIDEID~Ls~eaqn---------------------aLL------------ 545 (1152)
...+.+..+.++-+..+ ......++..+++|+|.+-......+ .++
T Consensus 64 ~~~~y~~~~f~~dLk~~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~ 143 (268)
T PF12780_consen 64 ITKGYSIKDFKEDLKKALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGI 143 (268)
T ss_dssp TSTTTHHHHHHHHHHHHHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT-
T ss_pred eeCCcCHHHHHHHHHHHHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCC
Confidence 44444555554444332 22233456678888887654221111 111
Q ss_pred ---------HHHhhCCCCEEEEEEcCCCC-------cchHHHHccceEEEecCCChhHHHHHHHHHHHH
Q 036794 546 ---------KVVDRAPRRVVFILVSSSLD-------ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK 598 (1152)
Q Consensus 546 ---------klLEepp~~VifILaTN~~d-------kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk 598 (1152)
.+++....+..||++-+... ...|+|.+.|.+.-|.+-+.+.+.......++.
T Consensus 144 ~~~~~~~~~~F~~rvr~nLHivl~~sp~~~~~r~~~~~fPaL~~~ctIdW~~~W~~eaL~~Va~~~l~~ 212 (268)
T PF12780_consen 144 SDSRESLYEFFIERVRKNLHIVLCMSPVGPNFRDRCRSFPALVNCCTIDWFDPWPEEALLSVANKFLSD 212 (268)
T ss_dssp -SSHHHHHHHHHHHHCCCEEEEEEESTTTTCCCHHHHHHCCHHHHSEEEEEES--HHHHHHHHHHHCCH
T ss_pred CCchHHHHHHHHHHHHhheeEEEEECCCCchHHHHHHhCcchhcccEEEeCCcCCHHHHHHHHHHHHHh
Confidence 11122345555665543221 234568888988888888888777766655443
|
The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A. |
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.4 Score=61.09 Aligned_cols=182 Identities=17% Similarity=0.217 Sum_probs=97.0
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC--------CCCCCCCCCCccccccCCCccceEE----e
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL--------EQPKPCGFCNSCISHDRGKSRNIKE----V 498 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~--------e~~epcg~c~~c~~i~~g~~~dviE----I 498 (1152)
..|.+-+..+.....+||+-|.|.||||++-.++..+..... ..++|.-+|..-........++.-. +
T Consensus 25 ~rL~~~L~~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~~~~a~~l 104 (894)
T COG2909 25 PRLLDRLRRANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTLGDEAQTL 104 (894)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccccHHHHHH
Confidence 345555666666778999999999999999999752211100 1111111110000000000000000 0
Q ss_pred -CCCCCCCHH-HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCCcc-hHHHHcc
Q 036794 499 -GPVGNFDFE-SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLDAL-PHIIISR 574 (1152)
Q Consensus 499 -daas~~~vd-eIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~dkL-~~aL~SR 574 (1152)
.......+. -+..++.++... .++-.+|||+-|.++..+ ...|..+|+..|.++.+|++|.....+ ...++=|
T Consensus 105 ~q~~~~~~l~~l~~~L~~Ela~~---~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~lRlr 181 (894)
T COG2909 105 LQKHQYVSLESLLSSLLNELASY---EGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLARLRLR 181 (894)
T ss_pred HHhcccccHHHHHHHHHHHHHhh---cCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccceeeh
Confidence 000011111 122333333222 334689999999997765 457778888899999999999643322 1222222
Q ss_pred ceEEEec----CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Q 036794 575 CQKFFFP----KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGS 618 (1152)
Q Consensus 575 ~qvI~F~----~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GD 618 (1152)
-+.+.+. .++.+|..+++.. .-+..++...++.|..+++|=
T Consensus 182 ~~llEi~~~~Lrf~~eE~~~fl~~---~~~l~Ld~~~~~~L~~~teGW 226 (894)
T COG2909 182 DELLEIGSEELRFDTEEAAAFLND---RGSLPLDAADLKALYDRTEGW 226 (894)
T ss_pred hhHHhcChHhhcCChHHHHHHHHH---cCCCCCChHHHHHHHhhcccH
Confidence 2211111 2345666666542 234889999999999998873
|
|
| >cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.033 Score=58.32 Aligned_cols=52 Identities=10% Similarity=0.291 Sum_probs=38.0
Q ss_pred CCCceEEEEeCCCCCCH-H--HHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 522 PSQYRIFVFDDCDTLSP-D--SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~-e--aqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
.+.+.+|||||+..+-. . ..+.++.+|+..|.++-+|+++.++. +.|.....
T Consensus 93 ~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p---~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP---KELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC---HHHHHhCc
Confidence 46789999999976522 1 34678999999899999999997743 44444443
|
This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin. |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.034 Score=59.53 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.|+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~~ 52 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGLA 52 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHHH
Confidence 46899999999999999999843
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >TIGR02237 recomb_radB DNA repair and recombination protein RadB | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.045 Score=58.48 Aligned_cols=26 Identities=38% Similarity=0.644 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||+|||+++..++....
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~ 37 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAA 37 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999987654
|
This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236). |
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.034 Score=57.89 Aligned_cols=45 Identities=16% Similarity=0.364 Sum_probs=33.0
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
.+..++++||.- .|.......|.++|.+......+|++|++++.+
T Consensus 113 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 158 (171)
T cd03228 113 RDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTI 158 (171)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH
Confidence 355899999975 466777778888887754457788888877643
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13900 type IV secretion system ATPase VirB11; Provisional | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.2 Score=58.26 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=34.1
Q ss_pred cccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 422 DLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++....+...|..+++.+. .+||+|++|+||||+++++...+..
T Consensus 142 ~~~~~~~~~~~L~~~v~~~~---nili~G~tgSGKTTll~aL~~~ip~ 186 (332)
T PRK13900 142 ELLAEKKIKEFLEHAVISKK---NIIISGGTSTGKTTFTNAALREIPA 186 (332)
T ss_pred hhhhhHHHHHHHHHHHHcCC---cEEEECCCCCCHHHHHHHHHhhCCC
Confidence 34455566667777776542 4899999999999999999988754
|
|
| >COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.04 Score=70.69 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=34.6
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCCHH--H-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPD--S-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls~e--a-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
++..+...|...++.+|||||+|.=+.+ . ...|.+++...+.+..+|+.+...
T Consensus 150 Llrei~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLKiIimSATl 205 (845)
T COG1643 150 LLREIQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLKLIIMSATL 205 (845)
T ss_pred HHHHHhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCceEEEEeccc
Confidence 4555556677789999999999985433 2 233444455555567777766544
|
|
| >PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.17 Score=55.44 Aligned_cols=145 Identities=15% Similarity=0.142 Sum_probs=69.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~ 524 (1152)
.|+|.||+|||||.+|-.+|+..+.+...... ..| |..+..++.. .... . ..+-
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Dr--iq~--y~~l~v~Sgr----------p~~~-------e-----l~~~ 56 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDR--IQC--YPELSVGSGR----------PTPS-------E-----LKGT 56 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-S--GGG---GGGTTTTT-------------SG-------G-----GTT-
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecc--eec--ccccccccCC----------CCHH-------H-----Hccc
Confidence 68999999999999999999999876322110 001 1111111110 0000 0 1123
Q ss_pred ceEEEEeCCCC----CC-HHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHcc-----ce--EEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDT----LS-PDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISR-----CQ--KFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~----Ls-~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR-----~q--vI~F~~p~~~EI~eiL 592 (1152)
.+ ++|||-.- ++ .++.+.|+..+.+....-.+|+-......+..-..++ ++ +..++-++.+.....+
T Consensus 57 ~R-iyL~~r~l~~G~i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra 135 (233)
T PF01745_consen 57 RR-IYLDDRPLSDGIINAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARA 135 (233)
T ss_dssp EE-EES----GGG-S--HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHH
T ss_pred ce-eeeccccccCCCcCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHH
Confidence 34 66665321 22 3456677888888777778889888777444433333 22 4555666666666666
Q ss_pred HHHHHHc--CCCCCHHHHHHHHHhcC
Q 036794 593 QWIASKE--GIEIDKDALKLIASRSD 616 (1152)
Q Consensus 593 ~~iakke--Gl~Id~dALelLAe~s~ 616 (1152)
.+++++. .-.-.+..++.|+..|.
T Consensus 136 ~~Rv~~ML~p~~~~~Sll~EL~~lW~ 161 (233)
T PF01745_consen 136 KRRVRQMLRPDSSGPSLLEELVALWN 161 (233)
T ss_dssp HHHHHHHHS--SSS--HHHHHHHHHT
T ss_pred HHHHHHhcCCCCCCCcHHHHHHHHHh
Confidence 6665542 11234567777777753
|
; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A. |
| >PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.018 Score=61.89 Aligned_cols=122 Identities=11% Similarity=0.054 Sum_probs=65.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCC-----CCCCCCCCCccccccCCCccceEEeCC-------CCCCCHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLE-----QPKPCGFCNSCISHDRGKSRNIKEVGP-------VGNFDFESILD 511 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e-----~~epcg~c~~c~~i~~g~~~dviEIda-------as~~~vdeIre 511 (1152)
..+++||++|.|||++|-.++-..-..... +-........-..+.......+..... ....+.....+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 358899999999999999887654322111 000000000000000000000111110 00111233444
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCCHH---HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLSPD---SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls~e---aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.++.+...-..+.+.+|||||+-.+-.. ..+.++.+|+..|..+-+|++..+..
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~p 159 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGAP 159 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 4444444334578899999998654221 24578889999899999999987643
|
|
| >COG1067 LonB Predicted ATP-dependent protease [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.1 Score=65.51 Aligned_cols=233 Identities=17% Similarity=0.147 Sum_probs=125.0
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHH-----HHhCCCCcEEEEEc----CCCchHHHHHHHHHHHHc-ccCCCCCCCCCCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNA-----VMRRKVGLLYVFYG----PHGTGKTSCARIFARALN-CQSLEQPKPCGFC 481 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~a-----L~~gri~~~yLL~G----PpGTGKTtlARaLAkeL~-~~~~e~~epcg~c 481 (1152)
.+.-+|..|.++.+++......... ..-+.....+..+| ++|.+++..++.+-.... ........++.+.
T Consensus 95 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gv~~~~~~~iv~~~~~~~~~~~~~~~~~~~ 174 (647)
T COG1067 95 VPAGRPESFSELLGQKAEEKAEYLSYLILLALLGPIEQQIILYGYNALLPGVLYAVAARIVLYEAKILKRSAVSVPKNFV 174 (647)
T ss_pred ccccCCcchHHHHHhhhhHHHHHHhhhhHHHhhchhhhhhhhcccccccchhhHHHHHHHHHhhhhcccchhhhhhhhhh
Confidence 4456778999999987655444433 11223233467788 999999999876654421 1212222222221
Q ss_pred Cc-----cccc-----cCCCccceEEeCCCCC-CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh
Q 036794 482 NS-----CISH-----DRGKSRNIKEVGPVGN-FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR 550 (1152)
Q Consensus 482 ~~-----c~~i-----~~g~~~dviEIdaas~-~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe 550 (1152)
.. .... ..+.-.+-++.++.+. .+......+...+ -..+.++||||||+..|....+..+|+.+++
T Consensus 175 ~~~~~~~~p~v~a~~~~~~~LlG~Vr~~~~qG~l~~~~~~~i~pGa---VHkAngGVLiIdei~lL~~~~~w~~LKa~~~ 251 (647)
T COG1067 175 ELSPLDGAPVVFATGAIADQLLGSVRHDPYQGGLGTTGHIRVKPGA---VHKANGGVLIIDEIGLLAQPLQWKLLKALLD 251 (647)
T ss_pred hhccccCCcEEecCCCChhhcceeEEEcCCCCccCCCCcccccCcc---cccccCcEEEEEhhhhhCcHHHHHHHHHHHh
Confidence 11 0000 0000001111111110 0000000010000 1135789999999999998877777777765
Q ss_pred ---------------------CCCCEEEEEEcCCCC--cchHHHHccce---E-EEecCC---ChhHHHHHHHHH----H
Q 036794 551 ---------------------APRRVVFILVSSSLD--ALPHIIISRCQ---K-FFFPKM---KDADIIYTLQWI----A 596 (1152)
Q Consensus 551 ---------------------pp~~VifILaTN~~d--kL~~aL~SR~q---v-I~F~~p---~~~EI~eiL~~i----a 596 (1152)
.|.+..+|+++|.-+ .+.+...+|.. . ..|... +++...+.++.+ +
T Consensus 252 k~~~~~~~~~~s~~~~v~~e~vP~d~klI~~Gn~~~l~~l~~~~~~r~~g~~y~ae~~~~m~~~~~nr~k~~~~~~q~v~ 331 (647)
T COG1067 252 KEQPIWGSSEPSSGAPVRPESVPLDLKLILAGNREDLEDLHEPDRSRIEGFGYEAEFEDTMPITDANRSKLVQFYVQELA 331 (647)
T ss_pred ccccccCcCccccCcccCCCCcccceEEEeeCCHHHHHhhcccCHHHHhhcceEEEEcCCCCCChHHHHHHHHHHHHHHH
Confidence 246778888887422 23333333332 2 455442 344444444433 3
Q ss_pred HH-cCCCCCHHHHHHHHHh----c------CCCHHHHHHHHHHHHHhC-----CCCCHHHHHHHHhc
Q 036794 597 SK-EGIEIDKDALKLIASR----S------DGSLRDAEMTLEQLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 597 kk-eGl~Id~dALelLAe~----s------~GDLR~Ain~LEkLsLlg-----~~IT~EdV~elVg~ 647 (1152)
+. .-..++.+|+..|... + .=.+|++.+++.-+...+ .-|+.++|.+++..
T Consensus 332 ~d~~ip~~~~~Av~~li~~a~R~Ag~~~~Ltl~~rdl~~lv~~A~~ia~~~~~~~I~ae~Ve~a~~~ 398 (647)
T COG1067 332 RDGNIPHLDKDAVEELIREAARRAGDQNKLTLRLRDLGNLVREAGDIAVSEGRKLITAEDVEEALQK 398 (647)
T ss_pred hcCCCCCCCHHHHHHHHHHHHHhccccceeccCHHHHHHHHHHhhHHHhcCCcccCcHHHHHHHHHh
Confidence 34 3346899998888766 2 236888999998765442 13999999988755
|
|
| >PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.051 Score=63.88 Aligned_cols=115 Identities=23% Similarity=0.304 Sum_probs=66.3
Q ss_pred HHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHH
Q 036794 430 AQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESI 509 (1152)
Q Consensus 430 ~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeI 509 (1152)
+..|+..++.-...+.++|+|||.|||+.++..|.+-+...... + ++..+.+-.
T Consensus 249 l~~lk~~Lkg~PKKnClvi~GPPdTGKS~F~~SLi~Fl~GkViS-------------f----------~Ns~ShFWL--- 302 (432)
T PF00519_consen 249 LIALKQFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVIS-------------F----------VNSKSHFWL--- 302 (432)
T ss_dssp HHHHHHHHHTBTTSSEEEEESSCCCSHHHHHHHHHHHHTSEEE--------------G----------GGTTSCGGG---
T ss_pred HHHHHHHHhCCCcccEEEEECCCCCchhHHHHHHHHHhCCEEEE-------------e----------cCCCCcccc---
Confidence 35556666655556789999999999999999999988765211 1 111111111
Q ss_pred HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHH----HHHHhhCC--------C-----CEEEEEEcCC-C--CcchH
Q 036794 510 LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAI----SKVVDRAP--------R-----RVVFILVSSS-L--DALPH 569 (1152)
Q Consensus 510 reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaL----LklLEepp--------~-----~VifILaTN~-~--dkL~~ 569 (1152)
.|. .+-+|.+||++ +...+.-+ ...|+..+ . -..+|++||. + +.-..
T Consensus 303 ---------qPL-~d~Ki~llDDA---T~~cW~Y~D~ylRNaLDGN~vsiD~KHkap~Qik~PPLlITsN~dv~~~~~~~ 369 (432)
T PF00519_consen 303 ---------QPL-ADAKIALLDDA---TYPCWDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKKDDRWK 369 (432)
T ss_dssp ---------GGG-CT-SSEEEEEE----HHHHHHHHHHTHHHHCTSEEEEEESSSEEEEEE---EEEEESS-TTTSCCCH
T ss_pred ---------cch-hcCcEEEEcCC---cccHHHHHHHHHHhccCCCeeeeeccCCCceEeecCceEEecCCCCCcchhhh
Confidence 122 45589999986 55566543 44454411 0 1125566652 2 22344
Q ss_pred HHHccceEEEecCC
Q 036794 570 IIISRCQKFFFPKM 583 (1152)
Q Consensus 570 aL~SR~qvI~F~~p 583 (1152)
-|.||...+.|+.+
T Consensus 370 YLhSRi~~f~F~n~ 383 (432)
T PF00519_consen 370 YLHSRITCFEFPNP 383 (432)
T ss_dssp HHCTTEEEEE--S-
T ss_pred hhhheEEEEEcCCc
Confidence 59999999999864
|
The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B. |
| >COG3899 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.62 E-value=0.59 Score=60.88 Aligned_cols=106 Identities=18% Similarity=0.140 Sum_probs=72.6
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----CCEEEEEEcCCCCcchHHHHcc--ceEEEecCCChhHHHHHHHHH
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----RRVVFILVSSSLDALPHIIISR--CQKFFFPKMKDADIIYTLQWI 595 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----~~VifILaTN~~dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~~i 595 (1152)
.++-|+|+|++|-..+...+.|-.++.... .+-++.+.+..+. +.....+. ...|.+.|++..+....+...
T Consensus 153 ~~plVi~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~-~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~ 231 (849)
T COG3899 153 EHPLVIVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPT-LGEILKSATNITTITLAPLSRADTNQLVAAT 231 (849)
T ss_pred cCCeEEEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccch-hhHHhhcCCceeEEecCcCchhhHHHHHHHH
Confidence 346789999999998888777777777643 1122222222222 33333333 346999999999999988877
Q ss_pred HHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036794 596 ASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 596 akkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs 630 (1152)
+.. ......+.++.+.+.+.||.--+.+.+..+.
T Consensus 232 l~~-~~~~~~p~~~~i~~kt~GnPfFi~e~lk~l~ 265 (849)
T COG3899 232 LGC-TKLLPAPLLELIFEKTKGNPFFIEEFLKALY 265 (849)
T ss_pred hCC-cccccchHHHHHHHHhcCCCccHHHHHHHHH
Confidence 754 3456778899999999998877777666554
|
|
| >KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.074 Score=65.42 Aligned_cols=52 Identities=17% Similarity=0.352 Sum_probs=34.9
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCC--CCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDT--LSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~--Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
|+.++...|-.+.|.||||||+|. |+.+..-.|.+=+....++.-+++.+..
T Consensus 366 LlREfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT 419 (902)
T KOG0923|consen 366 LLREFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSAT 419 (902)
T ss_pred HHHHHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccc
Confidence 444444556678999999999997 4555555666666666666666665543
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.056 Score=55.26 Aligned_cols=111 Identities=18% Similarity=0.182 Sum_probs=59.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC----CccceEEeCCCCCCCHHHHHH--HHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG----KSRNIKEVGPVGNFDFESILD--LLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g----~~~dviEIdaas~~~vdeIre--Lle~a~ 517 (1152)
..+.|.||.|+|||+++++|+..+........ ... ..+... ....+..+.. ....+.+. +...+.
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~--~~~----~~~~~~~~~~~~~~i~~~~q---lS~G~~~r~~l~~~l~ 96 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL--IDG----KDIAKLPLEELRRRIGYVPQ---LSGGQRQRVALARALL 96 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEE--ECC----EEcccCCHHHHHhceEEEee---CCHHHHHHHHHHHHHh
Confidence 57899999999999999999876532211000 000 000000 0000111111 12222222 222222
Q ss_pred hCCCCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCCC-CEEEEEEcCCCCcch
Q 036794 518 TSRPPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAPR-RVVFILVSSSLDALP 568 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~-~VifILaTN~~dkL~ 568 (1152)
.+..++++||.. .|.......|.+++.+... ...+|+++++.+.+.
T Consensus 97 -----~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 144 (157)
T cd00267 97 -----LNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAE 144 (157)
T ss_pred -----cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 335899999986 4666777777777766322 356778887766433
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.039 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.526 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+|++|+||||+|+.|++.++..
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~ 26 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAP 26 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCE
Confidence 7899999999999999999986543
|
The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits. |
| >cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP) | Back alignment and domain information |
|---|
Probab=95.54 E-value=0.1 Score=54.70 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|+|+||+|||++|+.|++.+++..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~ 27 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH 27 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 68999999999999999999977653
|
This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates. |
| >cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.21 Score=51.85 Aligned_cols=25 Identities=32% Similarity=0.413 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++|+||+|+|||+++..++..+..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4789999999999999999987653
|
SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain. |
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.04 Score=59.69 Aligned_cols=23 Identities=22% Similarity=0.365 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.++..
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 57899999999999999999754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK12726 flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.52 E-value=0.21 Score=59.21 Aligned_cols=108 Identities=15% Similarity=0.081 Sum_probs=55.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc-------CCCccce-EEeCCCCCCCHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD-------RGKSRNI-KEVGPVGNFDFESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~-------~g~~~dv-iEIdaas~~~vdeIreLle 514 (1152)
+..++|.||.|+||||++..+|..+....... ...+..+.... .....++ +.. ..+..++.+.+.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V---~lItaDtyR~gAveQLk~yae~lgvpv~~----~~dp~dL~~al~ 278 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTV---GFITTDTFRSGAVEQFQGYADKLDVELIV----ATSPAELEEAVQ 278 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeE---EEEeCCccCccHHHHHHHHhhcCCCCEEe----cCCHHHHHHHHH
Confidence 45789999999999999999998763221100 00000000000 0000111 111 123455555555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCC-EEEEEE
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRR-VVFILV 560 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~-VifILa 560 (1152)
.+... ..+.+||||=++.... +....|..+++...++ ++|++.
T Consensus 279 ~l~~~---~~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLs 324 (407)
T PRK12726 279 YMTYV---NCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFS 324 (407)
T ss_pred HHHhc---CCCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECC
Confidence 54321 3468999999988653 3445566665543333 344443
|
|
| >PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.025 Score=61.46 Aligned_cols=35 Identities=14% Similarity=0.380 Sum_probs=21.2
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+|||||++.+++..... +|-....++.+|++..
T Consensus 120 ~~~iIvDEaQN~t~~~~k~---ilTR~g~~skii~~GD 154 (205)
T PF02562_consen 120 NAFIIVDEAQNLTPEELKM---ILTRIGEGSKIIITGD 154 (205)
T ss_dssp SEEEEE-SGGG--HHHHHH---HHTTB-TT-EEEEEE-
T ss_pred ceEEEEecccCCCHHHHHH---HHcccCCCcEEEEecC
Confidence 5799999999999876444 4555566777777764
|
; GO: 0005524 ATP binding; PDB: 3B85_A. |
| >PRK07261 topology modulation protein; Provisional | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.12 Score=54.30 Aligned_cols=25 Identities=32% Similarity=0.618 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.|++|+||||+|+.|++.++..
T Consensus 3 i~i~G~~GsGKSTla~~l~~~~~~~ 27 (171)
T PRK07261 3 IAIIGYSGSGKSTLARKLSQHYNCP 27 (171)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 6899999999999999999887644
|
|
| >cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.12 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|+||||+|||+++..++...
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~ 43 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEA 43 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHh
Confidence 3589999999999999999998764
|
RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB. |
| >PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein | Back alignment and domain information |
|---|
Probab=95.48 E-value=0.54 Score=52.57 Aligned_cols=77 Identities=18% Similarity=0.154 Sum_probs=47.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhC-CCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEep-p~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~ 602 (1152)
...+||+|++..-. --.+.|..++... .-++-+|+.+-....+|+.++.-+..+-+-..+..++. .+.+..++.
T Consensus 98 ~~~LiIlDD~~~~~-~k~~~l~~~~~~gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~~s~~dl~----~i~~~~~~~ 172 (241)
T PF04665_consen 98 PRFLIILDDLGDKK-LKSKILRQFFNNGRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFNNSKRDLE----NIYRNMNIK 172 (241)
T ss_pred CCeEEEEeCCCCch-hhhHHHHHHHhcccccceEEEEEeeecccCCHHHhhcceEEEEecCcHHHHH----HHHHhcccc
Confidence 36799999986521 1123455665542 34778888888888899999888876443345555543 344444444
Q ss_pred CCH
Q 036794 603 IDK 605 (1152)
Q Consensus 603 Id~ 605 (1152)
.+.
T Consensus 173 ~~~ 175 (241)
T PF04665_consen 173 GPK 175 (241)
T ss_pred cch
Confidence 443
|
This is thought to be an ATPase involved in viral DNA packaging []. |
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.47 E-value=0.095 Score=55.69 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=23.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.++|.||||+|||++|+.|++.+++..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~ 29 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQ 29 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 478999999999999999999887653
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.091 Score=59.45 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|.||+|+||||+.++++..+..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~ 137 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILST 137 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCC
Confidence 46899999999999999999987753
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.071 Score=57.81 Aligned_cols=75 Identities=19% Similarity=0.274 Sum_probs=42.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPP 522 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~ 522 (1152)
+..+.|+||+|+|||+++..++....... +. .+....++.++....+....+.++.+.....+..
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~~~~~-~~--------------~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~ 83 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTVQLPI-EL--------------GGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEE 83 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHeeCcc-cc--------------CCCCccEEEEeCCCCcCHHHHHHHHHHhccChHh
Confidence 35789999999999999999975532111 00 0111235556555555566666666554322221
Q ss_pred CCceEEEEeC
Q 036794 523 SQYRIFVFDD 532 (1152)
Q Consensus 523 a~~kVVIIDE 532 (1152)
.-..+.+++.
T Consensus 84 ~~~~i~~~~~ 93 (235)
T cd01123 84 VLDNIYVARA 93 (235)
T ss_pred HhcCEEEEec
Confidence 2234666654
|
This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 . |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=95.42 E-value=0.064 Score=55.61 Aligned_cols=115 Identities=22% Similarity=0.272 Sum_probs=58.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHH--HHHHhhCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDL--LDNMVTSR 520 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreL--le~a~~~P 520 (1152)
+..+.|.||.|+||||+.++|+..+........ -.+.-.............+..+.. ....+.+.+ ...+.
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~-~~g~~~~~~~~~~~~~~~i~~~~q---LS~G~~qrl~laral~--- 98 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLYKPDSGEIL-VDGKEVSFASPRDARRAGIAMVYQ---LSVGERQMVEIARALA--- 98 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE-ECCEECCcCCHHHHHhcCeEEEEe---cCHHHHHHHHHHHHHh---
Confidence 346899999999999999999865432111000 000000000000000000111111 222222222 22222
Q ss_pred CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCC-CCEEEEEEcCCCCc
Q 036794 521 PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAP-RRVVFILVSSSLDA 566 (1152)
Q Consensus 521 ~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp-~~VifILaTN~~dk 566 (1152)
.+.+++++||.- .|.......+.++|.+.. ....+|++|.+.+.
T Consensus 99 --~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~ 144 (163)
T cd03216 99 --RNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDE 144 (163)
T ss_pred --cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 345899999975 466777777777776542 35667778877653
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >CHL00195 ycf46 Ycf46; Provisional | Back alignment and domain information |
|---|
Probab=95.40 E-value=0.34 Score=59.24 Aligned_cols=119 Identities=16% Similarity=0.264 Sum_probs=88.5
Q ss_pred ceEEEEeCCCCCCH--HHHHHHHHHHhh--CCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcC
Q 036794 525 YRIFVFDDCDTLSP--DSWSAISKVVDR--APRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEG 600 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~--eaqnaLLklLEe--pp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeG 600 (1152)
..+++|.++|.+-. .....|..+... ....+ +|+.+.... +|+.|..-+.+++|+.|+.+++...|..++...+
T Consensus 82 ~~~~vl~d~h~~~~~~~~~r~l~~l~~~~~~~~~~-~i~~~~~~~-~p~el~~~~~~~~~~lP~~~ei~~~l~~~~~~~~ 159 (489)
T CHL00195 82 PALFLLKDFNRFLNDISISRKLRNLSRILKTQPKT-IIIIASELN-IPKELKDLITVLEFPLPTESEIKKELTRLIKSLN 159 (489)
T ss_pred CcEEEEecchhhhcchHHHHHHHHHHHHHHhCCCE-EEEEcCCCC-CCHHHHhceeEEeecCcCHHHHHHHHHHHHHhcC
Confidence 46999999998843 233333333222 12333 444444444 8888988888999999999999999999888888
Q ss_pred CCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 036794 601 IEIDKDALKLIASRSDG-SLRDAEMTLEQLSLLGQRISVPLVQELV 645 (1152)
Q Consensus 601 l~Id~dALelLAe~s~G-DLR~Ain~LEkLsLlg~~IT~EdV~elV 645 (1152)
+.++++.++.|+..+.| +.-++.+.+.++....+.|+.+++..++
T Consensus 160 ~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~~~~~~~~~~~~i~ 205 (489)
T CHL00195 160 IKIDSELLENLTRACQGLSLERIRRVLSKIIATYKTIDENSIPLIL 205 (489)
T ss_pred CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCCChhhHHHHH
Confidence 99999999999999777 6788888888866556778888776554
|
|
| >PRK13709 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.075 Score=72.85 Aligned_cols=108 Identities=14% Similarity=0.174 Sum_probs=57.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-----h
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV-----T 518 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~-----~ 518 (1152)
..++|.|.+|||||++.+.+...+.... ... ++.....+........+.+ .......|..++.... .
T Consensus 985 r~~~I~G~AGTGKTT~l~~v~~~~~~l~-~~~---~~~V~glAPTgrAAk~L~e----~Gi~A~TI~s~L~~~~~~~~~~ 1056 (1747)
T PRK13709 985 RFTVVQGYAGVGKTTQFRAVMSAVNTLP-ESE---RPRVVGLGPTHRAVGEMRS----AGVDAQTLASFLHDTQLQQRSG 1056 (1747)
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhh-ccc---CceEEEECCcHHHHHHHHh----cCcchhhHHHHhcccccccccc
Confidence 4789999999999999999988764210 000 0000000000000000000 0112223333332210 0
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
........||||||+.|+.......|++.++... ..+||+.
T Consensus 1057 ~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~g--arvVLVG 1097 (1747)
T PRK13709 1057 ETPDFSNTLFLLDESSMVGNTDMARAYALIAAGG--GRAVSSG 1097 (1747)
T ss_pred cCCCCCCcEEEEEccccccHHHHHHHHHhhhcCC--CEEEEec
Confidence 0111345799999999999999999999887643 4555554
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.37 E-value=0.22 Score=53.26 Aligned_cols=25 Identities=16% Similarity=0.292 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.|.+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcC
Confidence 3468999999999999999998764
|
|
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.085 Score=54.67 Aligned_cols=113 Identities=15% Similarity=0.180 Sum_probs=57.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCC------CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQP------KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~------epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
...+++||.|+|||++.++++-.+........ ..|..+. ..... ++.... -..+..+...+...+.
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~~-----i~~~~~-lS~G~~~~~~la~~L~ 93 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGLALGGAQSATRRRSGVKAGCIVAA--VSAEL-----IFTRLQ-LSGGEKELSALALILA 93 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccCcccCCCccee--eEEEE-----ehheee-ccccHHHHHHHHHHHH
Confidence 46899999999999999998765544321110 1111111 11000 011100 1122333333333333
Q ss_pred hCCCCCCceEEEEeCCCCC-CHHHHHHHHHHHhhC-CCCEEEEEEcCCCC
Q 036794 518 TSRPPSQYRIFVFDDCDTL-SPDSWSAISKVVDRA-PRRVVFILVSSSLD 565 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~L-s~eaqnaLLklLEep-p~~VifILaTN~~d 565 (1152)
..+. ....+++|||+..- .......+...+.+. .....+|++|.+++
T Consensus 94 ~~~~-~~~~llllDEp~~gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~ 142 (162)
T cd03227 94 LASL-KPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVIVITHLPE 142 (162)
T ss_pred hcCC-CCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHH
Confidence 2211 35689999998664 444444444444332 11467778887776
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.013 Score=58.33 Aligned_cols=25 Identities=36% Similarity=0.727 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++++||||+||||+|+.+++.+.+
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~ 25 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGA 25 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTE
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCC
Confidence 4789999999999999999988764
|
... |
| >PRK10867 signal recognition particle protein; Provisional | Back alignment and domain information |
|---|
Probab=95.34 E-value=0.71 Score=55.75 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+|++|+||||++-.+|..+..
T Consensus 100 p~vI~~vG~~GsGKTTtaakLA~~l~~ 126 (433)
T PRK10867 100 PTVIMMVGLQGAGKTTTAGKLAKYLKK 126 (433)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 568999999999999999999887643
|
|
| >TIGR01425 SRP54_euk signal recognition particle protein SRP54 | Back alignment and domain information |
|---|
Probab=95.33 E-value=0.67 Score=55.80 Aligned_cols=136 Identities=13% Similarity=0.241 Sum_probs=67.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCccc--c------ccCCCccceEEeCCCCCCC-HHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSCI--S------HDRGKSRNIKEVGPVGNFD-FESILDL 512 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c~--~------i~~g~~~dviEIdaas~~~-vdeIreL 512 (1152)
+..++|+|++|+||||++..||..+...... ++.. |.... + ........++... ...+ ..-..+.
T Consensus 100 ~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~k---V~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~--~~~dp~~i~~~~ 174 (429)
T TIGR01425 100 QNVIMFVGLQGSGKTTTCTKLAYYYQRKGFK---PCLVCADTFRAGAFDQLKQNATKARIPFYGSY--TESDPVKIASEG 174 (429)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCC---EEEEcCcccchhHHHHHHHHhhccCCeEEeec--CCCCHHHHHHHH
Confidence 4589999999999999999999877533111 1101 10000 0 0000111112211 1112 1222233
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCCEEEEEEcCCCC---cchHHHHccc--eEEEecCCC
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRRVVFILVSSSLD---ALPHIIISRC--QKFFFPKMK 584 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~VifILaTN~~d---kL~~aL~SR~--qvI~F~~p~ 584 (1152)
++.+.. ..+.+||||=++.+..+ ....|.++.+. .|..++||+-+..-. .....+.... .-+-|.+++
T Consensus 175 l~~~~~----~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a~~~a~~F~~~~~~~g~IlTKlD 250 (429)
T TIGR01425 175 VEKFKK----ENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAAEAQAKAFKDSVDVGSVIITKLD 250 (429)
T ss_pred HHHHHh----CCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhHHHHHHHHHhccCCcEEEEECcc
Confidence 433322 35689999999887653 44566665544 345566666554321 1223333322 235566666
Q ss_pred hhH
Q 036794 585 DAD 587 (1152)
Q Consensus 585 ~~E 587 (1152)
...
T Consensus 251 ~~a 253 (429)
T TIGR01425 251 GHA 253 (429)
T ss_pred CCC
Confidence 543
|
This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model. |
| >PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ] | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.052 Score=60.49 Aligned_cols=52 Identities=15% Similarity=0.254 Sum_probs=35.8
Q ss_pred CcCcccCcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+++++.-.....+.+.+.+... +....+||+||+|+||||++.++...+...
T Consensus 102 sle~l~~~~~~~~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 102 SLEDLGESGSIPEEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp CHCCCCHTHHCHHHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred cHhhccCchhhHHHHHHHHhhccccceEEEEECCCccccchHHHHHhhhcccc
Confidence 5677765544444444444433 223469999999999999999999887644
|
These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B .... |
| >PRK06547 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.32 E-value=0.16 Score=53.64 Aligned_cols=31 Identities=26% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+..|+|+|++|+|||++|+.|++.++..
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~ 42 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQ 42 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4455679999999999999999999987644
|
|
| >PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.076 Score=60.10 Aligned_cols=135 Identities=14% Similarity=0.192 Sum_probs=69.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--cc----cCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI--SH----DRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~--~i----~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
..++|.||+|+|||+++..++..+........ ...+.... .. ......++-.. ...+...+.+.+..+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~--~i~~D~~ri~~~~ql~~~~~~~~~~~~---~~~~~~~l~~~l~~l~ 150 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVG--FITTDHSRIGTVQQLQDYVKTIGFEVI---AVRDEAAMTRALTYFK 150 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEE--EEecCCCCHHHHHHHHHHhhhcCceEE---ecCCHHHHHHHHHHHH
Confidence 57899999999999999999887643211000 00010000 00 00000010000 0123345555555443
Q ss_pred hCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhhC-CCCEEEEEEcC-CCCcchHHHHccce-----EEEecCCChhH
Q 036794 518 TSRPPSQYRIFVFDDCDTLS--PDSWSAISKVVDRA-PRRVVFILVSS-SLDALPHIIISRCQ-----KFFFPKMKDAD 587 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~Ls--~eaqnaLLklLEep-p~~VifILaTN-~~dkL~~aL~SR~q-----vI~F~~p~~~E 587 (1152)
.. .++.+||||-..... .+....|.++++.. +..++|++.++ ....+.. +..++. .+-|.+++...
T Consensus 151 ~~---~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~-~~~~f~~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 151 EE---ARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE-IITNFKDIHIDGIVFTKFDETA 225 (270)
T ss_pred hc---CCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH-HHHHhCCCCCCEEEEEeecCCC
Confidence 21 356899999999885 44566777776652 34566666544 3322322 222222 35566666544
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=95.28 E-value=0.23 Score=57.51 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++..+|..+..
T Consensus 114 ~~vi~lvGpnGsGKTTt~~kLA~~l~~ 140 (318)
T PRK10416 114 PFVILVVGVNGVGKTTTIGKLAHKYKA 140 (318)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 568999999999999999999988753
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.12 Score=56.97 Aligned_cols=108 Identities=16% Similarity=0.223 Sum_probs=56.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHH-HHcccCCCCCCCCCCCCccccccCCCccc-eEEeCCC-------CCC--CHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR-ALNCQSLEQPKPCGFCNSCISHDRGKSRN-IKEVGPV-------GNF--DFESILDL 512 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk-eL~~~~~e~~epcg~c~~c~~i~~g~~~d-viEIdaa-------s~~--~vdeIreL 512 (1152)
..++|+||.|.|||++.+.++. .+..... ...|+.. ..+ .-... +..+... +.+ ...++..+
T Consensus 32 ~~~~itG~N~~GKStll~~i~~~~~la~~G-~~v~a~~----~~~--~~~~~i~~~~~~~d~~~~~~StF~~e~~~~~~i 104 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVALITIMAQIG-SFVPASS----ATL--SIFDSVLTRMGASDSIQHGMSTFMVELSETSHI 104 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHhCC-CEEEcCc----eEE--eccceEEEEecCccccccccchHHHHHHHHHHH
Confidence 4689999999999999999987 3322211 0111111 000 00100 1111111 111 23344445
Q ss_pred HHHHhhCCCCCCceEEEEeCCCCCC--HHHH---HHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDTLS--PDSW---SAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~Ls--~eaq---naLLklLEepp~~VifILaTN~~d 565 (1152)
++.+ ..+.+|+|||+..-+ .+.. .++++.|.+. .+..+|++|...+
T Consensus 105 l~~~------~~~sLvllDE~~~gT~~~d~~~i~~~il~~l~~~-~~~~~i~~TH~~~ 155 (222)
T cd03287 105 LSNC------TSRSLVILDELGRGTSTHDGIAIAYATLHYLLEE-KKCLVLFVTHYPS 155 (222)
T ss_pred HHhC------CCCeEEEEccCCCCCChhhHHHHHHHHHHHHHhc-cCCeEEEEcccHH
Confidence 5443 356899999985532 2222 2455555443 4567788888766
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.09 Score=58.42 Aligned_cols=53 Identities=13% Similarity=0.265 Sum_probs=36.4
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhC--CCCEEEEEEcCCCCcchHHHHccceE
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRA--PRRVVFILVSSSLDALPHIIISRCQK 577 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEep--p~~VifILaTN~~dkL~~aL~SR~qv 577 (1152)
+.+++|+||.-. |....|..++++|.+. ..+..+||++.+... ...+-.|+.+
T Consensus 159 ~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~-v~~~cdRi~V 214 (252)
T COG1124 159 EPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLAL-VEHMCDRIAV 214 (252)
T ss_pred CCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHH-HHHHhhheee
Confidence 578999999744 5556677777777662 357789999988773 3335555543
|
|
| >cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP) | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.15 Score=57.53 Aligned_cols=51 Identities=18% Similarity=0.166 Sum_probs=38.2
Q ss_pred CCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..|+++--.+..++.|+.++.... ..++|+||+|+||||+++++...+..
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~~~--GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEKPH--GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhcCC--CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 3456666556677777877775443 25899999999999999999887753
|
It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=95.24 E-value=0.059 Score=56.22 Aligned_cols=43 Identities=16% Similarity=0.273 Sum_probs=31.0
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+.+++++||.- .|.......|.++|.+.. ....+|++|.+.+
T Consensus 113 ~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~ 157 (173)
T cd03246 113 GNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPE 157 (173)
T ss_pred cCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 456899999975 467777777777776632 3567788888765
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.13 Score=54.67 Aligned_cols=104 Identities=18% Similarity=0.250 Sum_probs=57.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHH--HHHHHHhhCC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESIL--DLLDNMVTSR 520 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIr--eLle~a~~~P 520 (1152)
+..+.|.||.|+||||+++.++..+...... +.+. +. .+..+.........+-+ .+...+.
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~-----------i~~~-g~--~i~~~~q~~~LSgGq~qrv~laral~--- 87 (177)
T cd03222 25 GEVIGIVGPNGTGKTTAVKILAGQLIPNGDN-----------DEWD-GI--TPVYKPQYIDLSGGELQRVAIAAALL--- 87 (177)
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCCCCCcE-----------EEEC-CE--EEEEEcccCCCCHHHHHHHHHHHHHh---
Confidence 3468899999999999999998764322111 0110 10 01111110002222211 2222222
Q ss_pred CCCCceEEEEeCCC-CCCHHHHHHHHHHHhhCC--CCEEEEEEcCCCC
Q 036794 521 PPSQYRIFVFDDCD-TLSPDSWSAISKVVDRAP--RRVVFILVSSSLD 565 (1152)
Q Consensus 521 ~~a~~kVVIIDEID-~Ls~eaqnaLLklLEepp--~~VifILaTN~~d 565 (1152)
.+..++++||.- .|.......+.+.+.+.. ....+|++|.+.+
T Consensus 88 --~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~ 133 (177)
T cd03222 88 --RNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLA 133 (177)
T ss_pred --cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHH
Confidence 345899999975 466677777777776532 2256777887765
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.073 Score=59.58 Aligned_cols=24 Identities=25% Similarity=0.196 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..+|++||||+|||+++..++..
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHH
Confidence 358999999999999999988765
|
This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles. |
| >KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.072 Score=64.80 Aligned_cols=150 Identities=17% Similarity=0.219 Sum_probs=92.3
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCC-----------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRK-----------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPK 476 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gr-----------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~e 476 (1152)
...|.....| .|.|++.+++.+.-.+..|- ..-.+|+.|.|-|-|+.+.|.+.+.....-..
T Consensus 292 FdlLa~SLAP----SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~T--- 364 (818)
T KOG0479|consen 292 FDLLARSLAP----SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIAT--- 364 (818)
T ss_pred HHHHhhccCc----ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccc---
Confidence 3444445554 57799999999887776531 11269999999999999999986653321100
Q ss_pred CCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh------
Q 036794 477 PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------ 550 (1152)
Q Consensus 477 pcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------ 550 (1152)
...|++ ++- +.++-..+.+....-++. ..-..+.++||.|||+|+|+.-.--++-.+||.
T Consensus 365 ----------TGRGSS-GVG-LTAAVTtD~eTGERRLEA--GAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIa 430 (818)
T KOG0479|consen 365 ----------TGRGSS-GVG-LTAAVTTDQETGERRLEA--GAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIA 430 (818)
T ss_pred ----------cCCCCC-Ccc-ceeEEeeccccchhhhhc--CceEEccCceEEehhcccccchhHHHHHHHHhcceEEeE
Confidence 001111 111 111111111111112221 011236789999999999998888899999987
Q ss_pred -------CCCCEEEEEEcCCCC-------------cchHHHHccceEE
Q 036794 551 -------APRRVVFILVSSSLD-------------ALPHIIISRCQKF 578 (1152)
Q Consensus 551 -------pp~~VifILaTN~~d-------------kL~~aL~SR~qvI 578 (1152)
...++-+|.++|-.. .|+..|++||..+
T Consensus 431 KAGIHasLNARCSVlAAANPvyG~Yd~~k~P~eNIgLpDSLLSRFDLl 478 (818)
T KOG0479|consen 431 KAGIHASLNARCSVLAAANPVYGQYDQSKTPMENIGLPDSLLSRFDLL 478 (818)
T ss_pred eccchhhhccceeeeeecCccccccCCCCChhhccCCcHHHHhhhcEE
Confidence 346777888887321 3888999999854
|
|
| >PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.017 Score=61.08 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++.||||||||+++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 48999999999998777776665
|
|
| >TIGR00064 ftsY signal recognition particle-docking protein FtsY | Back alignment and domain information |
|---|
Probab=95.19 E-value=0.23 Score=56.29 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||+|+||||++..+|..+.
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~l~ 97 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANKLK 97 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46889999999999999999998774
|
There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein. |
| >PRK04220 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.14 Score=58.91 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=30.3
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+...+.|-.+||.|++|+|||++|..||..++..
T Consensus 84 ~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~ 119 (301)
T PRK04220 84 RRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIR 119 (301)
T ss_pred HHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 445555677789999999999999999999998765
|
|
| >PRK12338 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.13 Score=59.39 Aligned_cols=28 Identities=29% Similarity=0.405 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++++|++|+||||+|+.+|..++..
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~ 31 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIK 31 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCe
Confidence 4578999999999999999999998754
|
|
| >TIGR00708 cobA cob(I)alamin adenosyltransferase | Back alignment and domain information |
|---|
Probab=95.16 E-value=0.056 Score=57.40 Aligned_cols=65 Identities=6% Similarity=0.105 Sum_probs=42.2
Q ss_pred HHHHHHHHhhCCCCCCceEEEEeCCCCCCHH---HHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 509 ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD---SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 509 IreLle~a~~~P~~a~~kVVIIDEID~Ls~e---aqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..+.++.+...-..+.+.+|||||+-.+-.- ..+.++++|+..|..+-+|++..+. |+.|.....
T Consensus 82 ~~~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~---p~~l~e~AD 149 (173)
T TIGR00708 82 AKAAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC---PQDLLELAD 149 (173)
T ss_pred HHHHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC---CHHHHHhCc
Confidence 4444444443333478899999998643111 1346888999989999999998764 344444444
|
Alternate name: corrinoid adenosyltransferase. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.042 Score=58.48 Aligned_cols=43 Identities=14% Similarity=0.146 Sum_probs=31.2
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+..++++||... |.......|+++|.+.. ....+|++|.+++
T Consensus 128 ~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 172 (194)
T cd03213 128 SNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPS 172 (194)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCch
Confidence 3568999999754 66777778888877643 3567788888765
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.024 Score=59.92 Aligned_cols=24 Identities=25% Similarity=0.519 Sum_probs=21.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++++|+|||||||+++.|+ .++..
T Consensus 3 I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 3 IAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred EEEeCCCCCchHHHHHHHH-HhCCc
Confidence 6899999999999999999 76654
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=95.14 E-value=0.087 Score=58.35 Aligned_cols=110 Identities=12% Similarity=0.155 Sum_probs=59.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC-------CCC--CHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV-------GNF--DFESILDLLD 514 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa-------s~~--~vdeIreLle 514 (1152)
..++|+||...|||++.|.++-...-...-...||..+.. .+... -+..+... +.+ ...++..+++
T Consensus 44 ~~~iiTGpN~sGKSt~lk~i~~~~ilaq~G~~VPA~~~~i--~~~d~---I~t~~~~~d~~~~~~S~F~~E~~~~~~il~ 118 (235)
T PF00488_consen 44 RIIIITGPNMSGKSTFLKQIGLIVILAQIGCFVPAESAEI--PIFDR---IFTRIGDDDSIESGLSTFMAEMKRLSSILR 118 (235)
T ss_dssp SEEEEESSTTSSHHHHHHHHHHHHHHHTTT--BSSSEEEE--E--SE---EEEEES---SSTTSSSHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCccchhhHHHHHHHHhhhhhcCceeeeccccc--ccccE---EEeecccccccccccccHHHhHHHHHhhhh
Confidence 5789999999999999999987654332222234333111 11000 01122111 111 1234555555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHH-----HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPD-----SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~e-----aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+ ..+.+|+|||+..-+.. ...+++++|.+. .++.+|++|+..+
T Consensus 119 ~~------~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~-~~~~~i~~TH~~~ 167 (235)
T PF00488_consen 119 NA------TEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEK-SGCFVIIATHFHE 167 (235)
T ss_dssp H--------TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHT-TT-EEEEEES-GG
T ss_pred hc------ccceeeecccccCCCChhHHHHHHHHHHHHHHHh-ccccEEEEeccch
Confidence 44 35689999999876432 233566666652 3567788887665
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.054 Score=64.79 Aligned_cols=25 Identities=36% Similarity=0.626 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.||+|+||||++..||..+
T Consensus 191 g~vi~lvGpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 191 GGVYALIGPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998753
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.099 Score=57.12 Aligned_cols=24 Identities=33% Similarity=0.501 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++++|+||+|||+++..++..
T Consensus 25 g~~~~i~G~~GsGKt~l~~~~~~~ 48 (234)
T PRK06067 25 PSLILIEGDHGTGKSVLSQQFVYG 48 (234)
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 358999999999999999999765
|
|
| >TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA | Back alignment and domain information |
|---|
Probab=95.11 E-value=0.11 Score=69.39 Aligned_cols=36 Identities=17% Similarity=0.276 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.....|..+|... .+++++|++|+||||.+=.+.-+
T Consensus 70 ~~~~~Il~~l~~~---~vvii~g~TGSGKTTqlPq~lle 105 (1283)
T TIGR01967 70 AKREDIAEAIAEN---QVVIIAGETGSGKTTQLPKICLE 105 (1283)
T ss_pred HHHHHHHHHHHhC---ceEEEeCCCCCCcHHHHHHHHHH
Confidence 3446666777653 36899999999999977555444
|
This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=95.10 E-value=0.083 Score=56.56 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=20.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|+||.|.|||++.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3689999999999999999983
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=95.08 E-value=0.14 Score=55.02 Aligned_cols=25 Identities=28% Similarity=0.490 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++|+||+|+||||++++++..+..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999888763
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK00131 aroK shikimate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.022 Score=58.26 Aligned_cols=28 Identities=32% Similarity=0.536 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+|||++|+.||+.++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~ 31 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYD 31 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4468999999999999999999998754
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=95.04 E-value=0.038 Score=67.94 Aligned_cols=42 Identities=14% Similarity=0.310 Sum_probs=30.7
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
++.|+++||.-. |.......+.+.|.+...+..+|++|+++.
T Consensus 487 ~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~ 529 (571)
T TIGR02203 487 DAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLS 529 (571)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhH
Confidence 467999999854 566677788888877555667777777754
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases | Back alignment and domain information |
|---|
Probab=95.00 E-value=0.042 Score=59.15 Aligned_cols=22 Identities=23% Similarity=0.372 Sum_probs=19.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+++.|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 3689999999999999998874
|
Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=94.99 E-value=0.23 Score=60.54 Aligned_cols=26 Identities=31% Similarity=0.542 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.+++|.||.|+||||++..||..+.
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~ 281 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCV 281 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHH
Confidence 35899999999999999999998763
|
|
| >TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=71.02 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=28.8
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
....||||||+.+++......|++..+.....++||.=
T Consensus 528 ~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlvGD 565 (1960)
T TIGR02760 528 SNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILLND 565 (1960)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEEcC
Confidence 45689999999999999888888887764444444443
|
This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein. |
| >PRK14712 conjugal transfer nickase/helicase TraI; Provisional | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.16 Score=69.09 Aligned_cols=99 Identities=17% Similarity=0.267 Sum_probs=56.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---------CCCCHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV---------GNFDFESILDLLD 514 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa---------s~~~vdeIreLle 514 (1152)
..++|.|.+|||||++.+.+...+.... +.. ...+.-+.+. .......+..++.
T Consensus 853 r~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~----------------g~~V~glAPTgkAa~~L~e~Gi~A~TIasfL~ 915 (1623)
T PRK14712 853 RFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESE----------------RPRVVGLGPTHRAVGEMRSAGVDAQTLASFLH 915 (1623)
T ss_pred ceEEEEeCCCCCHHHHHHHHHHHHHHHh-hcc----------------CceEEEEechHHHHHHHHHhCchHhhHHHHhc
Confidence 4689999999999999988877653210 000 0001111110 0112222333332
Q ss_pred HHh-----hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 515 NMV-----TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 515 ~a~-----~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
... .........||||||+.|+....+..|++.++... ..+||+.
T Consensus 916 ~~~~~~~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~g--arvVLVG 965 (1623)
T PRK14712 916 DTQLQQRSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGG--GRAVASG 965 (1623)
T ss_pred cccchhhcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCC--CEEEEEc
Confidence 210 00111245799999999999999889999887633 4455554
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=94.98 E-value=0.067 Score=55.80 Aligned_cols=43 Identities=16% Similarity=0.320 Sum_probs=30.9
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+..++++||.-. |.......|+++|.+.. ....+|++|.+.+
T Consensus 112 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~ 156 (173)
T cd03230 112 HDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILE 156 (173)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHH
Confidence 4568999999754 56677778888887643 2466788887765
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.96 E-value=0.12 Score=54.93 Aligned_cols=26 Identities=35% Similarity=0.611 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.||+|+|||++++.|+..+.
T Consensus 5 g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 5 GLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 44689999999999999999998754
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=94.93 E-value=0.085 Score=67.10 Aligned_cols=151 Identities=17% Similarity=0.134 Sum_probs=71.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC----CCccceEEeCCCCCCCHHHHHHHHHHHhh
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR----GKSRNIKEVGPVGNFDFESILDLLDNMVT 518 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~----g~~~dviEIdaas~~~vdeIreLle~a~~ 518 (1152)
+.+|+|.||.|+||||++..||..+.............+.. ..+.. ..+.....+......+...+.+.++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt-~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~~-- 261 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDS-FRIGALEQLRIYGRILGVPVHAVKDAADLRFALAAL-- 261 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcc-cchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHHh--
Confidence 35899999999999999999997653211000000000000 00000 000000000000112344455555543
Q ss_pred CCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhh-CCCCEEEEEEcCCC-Ccch---HHHHc----cceEEEecCCChhH
Q 036794 519 SRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDR-APRRVVFILVSSSL-DALP---HIIIS----RCQKFFFPKMKDAD 587 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEe-pp~~VifILaTN~~-dkL~---~aL~S----R~qvI~F~~p~~~E 587 (1152)
..+.+||||=+.....+ ....|..+.+. .+..+++|+.++.- +.+. ..+.. ...-+-|.++++..
T Consensus 262 ----~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~ 337 (767)
T PRK14723 262 ----GDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEAT 337 (767)
T ss_pred ----cCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCC
Confidence 35589999999987543 23333333322 45567777765532 2222 22221 12346677777654
Q ss_pred HHHHHHHHHHHcC
Q 036794 588 IIYTLQWIASKEG 600 (1152)
Q Consensus 588 I~eiL~~iakkeG 600 (1152)
-.-.+-.++...+
T Consensus 338 ~~G~iL~i~~~~~ 350 (767)
T PRK14723 338 HLGPALDTVIRHR 350 (767)
T ss_pred CccHHHHHHHHHC
Confidence 4443333443333
|
|
| >PRK12337 2-phosphoglycerate kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.92 E-value=0.17 Score=61.13 Aligned_cols=34 Identities=26% Similarity=0.271 Sum_probs=28.3
Q ss_pred HHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 437 VMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 437 L~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+...+.+..++|+|++|+|||++|..+|..++..
T Consensus 249 i~~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~ 282 (475)
T PRK12337 249 IRRPPRPLHVLIGGVSGVGKSVLASALAYRLGIT 282 (475)
T ss_pred hhccCCCeEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3444457789999999999999999999998754
|
|
| >COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.91 E-value=0.13 Score=62.26 Aligned_cols=56 Identities=21% Similarity=0.201 Sum_probs=44.4
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.+..-.|+++.........+..++.... -.+|++||.|+||||+..++.+.++...
T Consensus 231 ~~~~l~l~~Lg~~~~~~~~~~~~~~~p~--GliLvTGPTGSGKTTTLY~~L~~ln~~~ 286 (500)
T COG2804 231 DQVILDLEKLGMSPFQLARLLRLLNRPQ--GLILVTGPTGSGKTTTLYAALSELNTPE 286 (500)
T ss_pred ccccCCHHHhCCCHHHHHHHHHHHhCCC--eEEEEeCCCCCCHHHHHHHHHHHhcCCC
Confidence 3344567888777888888888877643 3589999999999999999999988664
|
|
| >PRK09376 rho transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.024 Score=66.99 Aligned_cols=25 Identities=20% Similarity=0.266 Sum_probs=22.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.||.||+|+|||++++.|++.+...
T Consensus 172 ~lIvgppGvGKTTLaK~Ian~I~~n 196 (416)
T PRK09376 172 GLIVAPPKAGKTVLLQNIANSITTN 196 (416)
T ss_pred EEEeCCCCCChhHHHHHHHHHHHhh
Confidence 6899999999999999999988654
|
|
| >TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal | Back alignment and domain information |
|---|
Probab=94.89 E-value=0.052 Score=60.00 Aligned_cols=24 Identities=25% Similarity=0.473 Sum_probs=22.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
++|+|+||+||||+|+.+++.+..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 689999999999999999998753
|
Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=94.87 E-value=0.045 Score=57.95 Aligned_cols=20 Identities=25% Similarity=0.404 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999984
|
|
| >PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.1 Score=54.96 Aligned_cols=24 Identities=25% Similarity=0.288 Sum_probs=21.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+|++|++|+|||++|..++..++
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcC
Confidence 479999999999999999998865
|
|
| >cd01878 HflX HflX subfamily | Back alignment and domain information |
|---|
Probab=94.80 E-value=0.57 Score=49.60 Aligned_cols=23 Identities=17% Similarity=0.190 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|.|++|+|||++...+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 46899999999999999998765
|
A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=94.75 E-value=0.064 Score=66.24 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=30.5
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
++.++++||.-. |..+....+.+.|.+...+..+|++|.+++
T Consensus 498 ~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~ 540 (582)
T PRK11176 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchH
Confidence 367999999854 566666777777777555677777887764
|
|
| >cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.46 Score=47.18 Aligned_cols=25 Identities=32% Similarity=0.656 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.|.|++|+|||++|+.|++.++..
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~ 26 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLP 26 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6899999999999999999998755
|
|
| >PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse | Back alignment and domain information |
|---|
Probab=94.72 E-value=0.14 Score=49.48 Aligned_cols=106 Identities=13% Similarity=0.140 Sum_probs=52.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCH---H----HHHHHHHHHhh
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF---E----SILDLLDNMVT 518 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~v---d----eIreLle~a~~ 518 (1152)
++|.|++|+||||+..+|...-...... ..++..-.....+. -....+..+|.++-.+. . .+...++.+
T Consensus 2 V~iiG~~~~GKSTlin~l~~~~~~~~~~-~~~~T~~~~~~~~~-~~~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~-- 77 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGKKLAKVSN-IPGTTRDPVYGQFE-YNNKKFILVDTPGINDGESQDNDGKEIRKFLEQI-- 77 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTSTSSEESS-STTSSSSEEEEEEE-ETTEEEEEEESSSCSSSSHHHHHHHHHHHHHHHH--
T ss_pred EEEECCCCCCHHHHHHHHhccccccccc-cccceeeeeeeeee-eceeeEEEEeCCCCcccchhhHHHHHHHHHHHHH--
Confidence 6899999999999999998531111100 01111111000000 01222345555443321 1 122333333
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
...+.-++++| ++....+....+++.|+ ...++++|+
T Consensus 78 --~~~d~ii~vv~-~~~~~~~~~~~~~~~l~-~~~~~i~v~ 114 (116)
T PF01926_consen 78 --SKSDLIIYVVD-ASNPITEDDKNILRELK-NKKPIILVL 114 (116)
T ss_dssp --CTESEEEEEEE-TTSHSHHHHHHHHHHHH-TTSEEEEEE
T ss_pred --HHCCEEEEEEE-CCCCCCHHHHHHHHHHh-cCCCEEEEE
Confidence 22345677788 77644455667777776 445555554
|
These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A .... |
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.16 Score=54.55 Aligned_cols=42 Identities=14% Similarity=0.324 Sum_probs=32.4
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++++||... +.......|..+|.+......+|++|.+++
T Consensus 135 ~~~illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~ 177 (197)
T cd03278 135 PSPFCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKG 177 (197)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 347999999865 667778888888887544567888888866
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >PHA02530 pseT polynucleotide kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.21 Score=56.41 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+|+||+||||+|+.|++.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 468999999999999999999987
|
|
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.37 Score=62.00 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=21.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.++..
T Consensus 323 ~~liItGpNg~GKSTlLK~i~~~ 345 (771)
T TIGR01069 323 RVLAITGPNTGGKTVTLKTLGLL 345 (771)
T ss_pred eEEEEECCCCCCchHHHHHHHHH
Confidence 47899999999999999999876
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C | Back alignment and domain information |
|---|
Probab=94.70 E-value=0.026 Score=54.56 Aligned_cols=22 Identities=36% Similarity=0.446 Sum_probs=20.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
++|+|++|+||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999996
|
... |
| >PRK11664 ATP-dependent RNA helicase HrpB; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.27 Score=63.57 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCAR 461 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlAR 461 (1152)
.+...|.+++..++ .+++.||+|+|||+..=
T Consensus 8 ~~~~~i~~~l~~~~---~vvv~A~TGSGKTt~~p 38 (812)
T PRK11664 8 AVLPELLTALKTAP---QVLLKAPTGAGKSTWLP 38 (812)
T ss_pred HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHH
Confidence 45566777776543 48999999999999764
|
|
| >PRK11823 DNA repair protein RadA; Provisional | Back alignment and domain information |
|---|
Probab=94.68 E-value=0.091 Score=63.45 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+||+||||+|||+++..++..+.
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a 105 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLA 105 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988654
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.12 Score=56.40 Aligned_cols=23 Identities=26% Similarity=0.407 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.|||++.+.++..
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.087 Score=57.79 Aligned_cols=111 Identities=14% Similarity=0.208 Sum_probs=57.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC-------CCC--CHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV-------GNF--DFESILDLL 513 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa-------s~~--~vdeIreLl 513 (1152)
...++|+||.|.|||++.+.++-...-...-...||... .+..- ..-+..+... +.+ ...++..++
T Consensus 30 ~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~vpa~~~----~i~~~-~~i~~~~~~~d~~~~~~StF~~e~~~~~~il 104 (218)
T cd03286 30 PRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDVPAKSM----RLSLV-DRIFTRIGARDDIMKGESTFMVELSETANIL 104 (218)
T ss_pred CcEEEEECCCCCchHHHHHHHHHHHHHHHcCCccCcccc----Eeccc-cEEEEecCcccccccCcchHHHHHHHHHHHH
Confidence 346899999999999999999775322211111222211 11000 0001111111 111 123344445
Q ss_pred HHHhhCCCCCCceEEEEeCCCCCC-H-H---HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 514 DNMVTSRPPSQYRIFVFDDCDTLS-P-D---SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 514 e~a~~~P~~a~~kVVIIDEID~Ls-~-e---aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+.+ ..+.+|+|||+..-. + + ...+++++|.+. .++.+|++|...+
T Consensus 105 ~~~------~~~sLvLlDE~~~Gt~~~dg~~la~ail~~L~~~-~~~~~i~~TH~~e 154 (218)
T cd03286 105 RHA------TPDSLVILDELGRGTSTHDGYAIAHAVLEYLVKK-VKCLTLFSTHYHS 154 (218)
T ss_pred HhC------CCCeEEEEecccCCCCchHHHHHHHHHHHHHHHh-cCCcEEEEeccHH
Confidence 443 456899999986532 2 2 223444555442 3678888888765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=94.61 E-value=0.11 Score=54.58 Aligned_cols=44 Identities=16% Similarity=0.353 Sum_probs=31.0
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCCC--CEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAPR--RVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~--~VifILaTN~~dk 566 (1152)
.+.+++++||.-. |.......|.++|.+... ...+|++|.+++.
T Consensus 117 ~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~ 163 (178)
T cd03229 117 MDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDE 163 (178)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 4558999999754 667777788887776432 3677788877653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.049 Score=64.67 Aligned_cols=27 Identities=22% Similarity=0.218 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++++.|++.+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhccc
Confidence 358999999999999999999987543
|
Members of this family differ in the specificity of RNA binding. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=94.56 E-value=0.07 Score=56.01 Aligned_cols=44 Identities=16% Similarity=0.246 Sum_probs=31.6
Q ss_pred CCceEEEEeCCC-CCCHHHHHHHHHHHhhCCC--CEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDCD-TLSPDSWSAISKVVDRAPR--RVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEID-~Ls~eaqnaLLklLEepp~--~VifILaTN~~dk 566 (1152)
.+..++++||.- .|.......|.++|.+... ...+|++|.+++.
T Consensus 114 ~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~ 160 (180)
T cd03214 114 QEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNL 160 (180)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 345899999975 5677777778887776433 4677888887663
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.22 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.587 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.++|+||+|+||+++.+++|..+.
T Consensus 31 ~iaitGPSG~GKStllk~va~Lis 54 (223)
T COG4619 31 FIAITGPSGCGKSTLLKIVASLIS 54 (223)
T ss_pred eEEEeCCCCccHHHHHHHHHhccC
Confidence 589999999999999999998653
|
|
| >COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=94.52 E-value=0.63 Score=53.43 Aligned_cols=27 Identities=26% Similarity=0.475 Sum_probs=24.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.+|++||.|+||||+.-++-.++|...
T Consensus 127 LILVTGpTGSGKSTTlAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTTLAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHHHHHHHHHHhccC
Confidence 589999999999999999999998764
|
|
| >cd01121 Sms Sms (bacterial radA) DNA repair protein | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.19 Score=59.33 Aligned_cols=25 Identities=24% Similarity=0.263 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+||+|+||+|||+++..++..+.
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a 107 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLA 107 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999987654
|
This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules. |
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=94.44 E-value=0.14 Score=56.43 Aligned_cols=25 Identities=28% Similarity=0.406 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||+++..++..+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~ 48 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGF 48 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3479999999999999986655543
|
|
| >PLN03187 meiotic recombination protein DMC1 homolog; Provisional | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.2 Score=58.64 Aligned_cols=61 Identities=15% Similarity=0.225 Sum_probs=41.4
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
....+.|+||+|+|||+++..++-....+.. ..+....+++++..+.+..+++.++.+.+.
T Consensus 125 ~G~ItEI~G~~GsGKTql~lqlav~~qlp~~---------------~gg~~~~vvyIdTE~tF~peRl~~ia~~~g 185 (344)
T PLN03187 125 TRCITEAFGEFRSGKTQLAHTLCVTTQLPTE---------------MGGGNGKVAYIDTEGTFRPDRIVPIAERFG 185 (344)
T ss_pred CCeEEEEecCCCCChhHHHHHHHHHHhcchh---------------hCCCCceEEEEEcCCCCCHHHHHHHHHHcC
Confidence 3458899999999999999988654322100 001112367788777788888888877653
|
|
| >PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed | Back alignment and domain information |
|---|
Probab=94.43 E-value=0.37 Score=55.60 Aligned_cols=27 Identities=37% Similarity=0.512 Sum_probs=24.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|..||+.+++.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~ 31 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGE 31 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCc
Confidence 478999999999999999999998754
|
|
| >PRK11131 ATP-dependent RNA helicase HrpA; Provisional | Back alignment and domain information |
|---|
Probab=94.42 E-value=0.26 Score=65.90 Aligned_cols=36 Identities=19% Similarity=0.232 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
...+.|..++... .+++++|++|+||||..=.+..+
T Consensus 77 ~~r~~Il~ai~~~---~VviI~GeTGSGKTTqlPq~lle 112 (1294)
T PRK11131 77 QKKQDILEAIRDH---QVVIVAGETGSGKTTQLPKICLE 112 (1294)
T ss_pred HHHHHHHHHHHhC---CeEEEECCCCCCHHHHHHHHHHH
Confidence 4445666666654 36899999999999965544444
|
|
| >TIGR00959 ffh signal recognition particle protein | Back alignment and domain information |
|---|
Probab=94.40 E-value=0.46 Score=57.26 Aligned_cols=26 Identities=27% Similarity=0.386 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.|++|+||||++..+|..+.
T Consensus 99 p~vi~~vG~~GsGKTTtaakLA~~l~ 124 (428)
T TIGR00959 99 PTVILMVGLQGSGKTTTCGKLAYYLK 124 (428)
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 46899999999999999999998864
|
This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle. |
| >TIGR02236 recomb_radA DNA repair and recombination protein RadA | Back alignment and domain information |
|---|
Probab=94.38 E-value=0.24 Score=56.62 Aligned_cols=60 Identities=17% Similarity=0.250 Sum_probs=39.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
.+..++|+||||+|||+++..++.....+.. ..+....+++++....+..+.+.++.+..
T Consensus 94 ~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~---------------~g~~~~~~~yi~te~~f~~~rl~~~~~~~ 153 (310)
T TIGR02236 94 TQAITEVFGEFGSGKTQICHQLAVNVQLPEE---------------KGGLGGKAVYIDTENTFRPERIMQMAEAR 153 (310)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcCCcc---------------cCCCcceEEEEECCCCCCHHHHHHHHHHc
Confidence 3468899999999999999999765432100 00111136777776667777777776654
|
This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein. |
| >PF13245 AAA_19: Part of AAA domain | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.053 Score=49.90 Aligned_cols=24 Identities=50% Similarity=0.682 Sum_probs=17.2
Q ss_pred cEEEEEcCCCchHHH-HHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTS-CARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTt-lARaLAkeL 467 (1152)
+.+++.||||||||+ +++.++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456779999999994 555555544
|
|
| >cd01394 radB RadB | Back alignment and domain information |
|---|
Probab=94.33 E-value=0.25 Score=53.16 Aligned_cols=26 Identities=42% Similarity=0.575 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+|+||+|||+++..++..+.
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~ 44 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETA 44 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45799999999999999999988764
|
The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear. |
| >PRK04301 radA DNA repair and recombination protein RadA; Validated | Back alignment and domain information |
|---|
Probab=94.32 E-value=0.2 Score=57.65 Aligned_cols=59 Identities=22% Similarity=0.330 Sum_probs=39.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
+..++|+||||+|||+++..++........ ..+....+++++....+..+.+.++.+.+
T Consensus 102 g~vtei~G~~GsGKT~l~~~~~~~~~~~~~---------------~gg~~~~~~yi~te~~f~~~rl~~~~~~~ 160 (317)
T PRK04301 102 QSITEFYGEFGSGKTQICHQLAVNVQLPEE---------------KGGLEGKAVYIDTEGTFRPERIEQMAEAL 160 (317)
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHhccccc---------------cCCCCceEEEEeCCCCcCHHHHHHHHHHc
Confidence 468999999999999999999755322110 00111236677766667778877777654
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.27 E-value=0.37 Score=52.06 Aligned_cols=43 Identities=19% Similarity=0.291 Sum_probs=30.7
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhh-CCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDR-APRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEe-pp~~VifILaTN~~d 565 (1152)
.+.+++|+||-+. |++.-|-.||..|.. .....-||++|..|=
T Consensus 145 ~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPi 189 (233)
T COG3910 145 NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPI 189 (233)
T ss_pred ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChh
Confidence 4568999999876 577767677766655 223477888888764
|
|
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.15 Score=54.22 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=29.5
Q ss_pred ceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 525 YRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 525 ~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
..++++||.-. |.......|+++|.+.. ....+|++|.+++
T Consensus 108 p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~ 150 (176)
T cd03238 108 GTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLD 150 (176)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 58999999744 66667777777776532 3567788888776
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd01852 AIG1 AIG1 (avrRpt2-induced gene 1) | Back alignment and domain information |
|---|
Probab=94.19 E-value=1.3 Score=47.03 Aligned_cols=114 Identities=11% Similarity=0.194 Sum_probs=53.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc-CCCccceEEeCCCCCCCH----HHHHHHHHHHhhC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD-RGKSRNIKEVGPVGNFDF----ESILDLLDNMVTS 519 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~-~g~~~dviEIdaas~~~v----deIreLle~a~~~ 519 (1152)
.++|.|.+|+|||+++..|...-....... ..+.-..|.... .-....+..+|.++..+. +.+...+......
T Consensus 2 ~i~lvG~~g~GKSsl~N~ilg~~~~~~~~~--~~~~T~~~~~~~~~~~~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~ 79 (196)
T cd01852 2 RLVLVGKTGAGKSATGNTILGREVFESKLS--ASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSL 79 (196)
T ss_pred EEEEECCCCCCHHHHHHHhhCCCccccccC--CCCcccccceeeEEECCeEEEEEECcCCCCccCChHHHHHHHHHHHHh
Confidence 378999999999999999975422111100 011111121110 001234566666554332 2333333332222
Q ss_pred CCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----CCCCEEEEEEc
Q 036794 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----APRRVVFILVS 561 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----pp~~VifILaT 561 (1152)
...+...+|++-.++.+..... .+++.+.+ .-.+++++++-
T Consensus 80 ~~~g~~~illVi~~~~~t~~d~-~~l~~l~~~fg~~~~~~~ivv~T~ 125 (196)
T cd01852 80 SAPGPHAFLLVVPLGRFTEEEE-QAVETLQELFGEKVLDHTIVLFTR 125 (196)
T ss_pred cCCCCEEEEEEEECCCcCHHHH-HHHHHHHHHhChHhHhcEEEEEEC
Confidence 2234445666666777655433 33333332 12455565553
|
This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins). |
| >cd04140 ARHI_like ARHI subfamily | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.44 Score=48.54 Aligned_cols=20 Identities=35% Similarity=0.615 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||++.+.+..
T Consensus 4 v~~vG~~~vGKTsli~~~~~ 23 (165)
T cd04140 4 VVVFGAGGVGKSSLVLRFVK 23 (165)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998864
|
ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to |
| >PRK09361 radB DNA repair and recombination protein RadB; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=0.25 Score=53.50 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||||+|||++|..++...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4589999999999999999998765
|
|
| >cd04101 RabL4 RabL4 (Rab-like4) subfamily | Back alignment and domain information |
|---|
Probab=94.16 E-value=0.31 Score=49.12 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=17.9
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
+++.|++|+|||+++..+..
T Consensus 3 i~vvG~~~~GKtsl~~~l~~ 22 (164)
T cd04101 3 CAVVGDPAVGKTAFVQMFHS 22 (164)
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 68999999999999998863
|
RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown. |
| >TIGR02238 recomb_DMC1 meiotic recombinase Dmc1 | Back alignment and domain information |
|---|
Probab=94.15 E-value=0.23 Score=57.34 Aligned_cols=59 Identities=14% Similarity=0.199 Sum_probs=39.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
...++|+||||+|||+++..++-....+.. ..+....+.+++....+..+++.++.+.+
T Consensus 96 G~iteI~G~~GsGKTql~lqla~~~~~~~~---------------~gg~~~~vvYIdtE~~f~~eRi~~~a~~~ 154 (313)
T TIGR02238 96 MSITEVFGEFRCGKTQLSHTLCVTAQLPRE---------------MGGGNGKVAYIDTEGTFRPDRIRAIAERF 154 (313)
T ss_pred CeEEEEECCCCCCcCHHHHHHHHHHhcchh---------------hcCCCCeEEEEEcCCCCCHHHHHHHHHHc
Confidence 357899999999999999888754322100 00111236777777778888888877664
|
This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis. |
| >TIGR03499 FlhF flagellar biosynthetic protein FlhF | Back alignment and domain information |
|---|
Probab=94.14 E-value=0.22 Score=56.51 Aligned_cols=26 Identities=31% Similarity=0.478 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.||+|+||||++..||..+.
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=94.13 E-value=0.11 Score=55.42 Aligned_cols=43 Identities=9% Similarity=0.293 Sum_probs=30.9
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhC-CCCEEEEEEcCCCCc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRA-PRRVVFILVSSSLDA 566 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEep-p~~VifILaTN~~dk 566 (1152)
+..++++||.-. |.......|.++|.+. .....+|++|.+++.
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~ 188 (205)
T cd03226 144 GKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEF 188 (205)
T ss_pred CCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHH
Confidence 467999999754 6677777777777764 235678888887663
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK03839 putative kinase; Provisional | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.038 Score=57.76 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=23.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|.|+||+||||+++.||+.++..+
T Consensus 3 I~l~G~pGsGKsT~~~~La~~~~~~~ 28 (180)
T PRK03839 3 IAITGTPGVGKTTVSKLLAEKLGYEY 28 (180)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcE
Confidence 78999999999999999999987654
|
|
| >cd04177 RSR1 RSR1 subgroup | Back alignment and domain information |
|---|
Probab=94.08 E-value=0.35 Score=49.42 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=19.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-++|.|++|+|||++++.+++..
T Consensus 3 ki~liG~~~~GKTsli~~~~~~~ 25 (168)
T cd04177 3 KIVVLGAGGVGKSALTVQFVQNV 25 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999997543
|
RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=94.08 E-value=1.4 Score=46.66 Aligned_cols=39 Identities=31% Similarity=0.265 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.....|...+..+. .++|.||+|+||||+++++...+.
T Consensus 12 ~~~~~~l~~~v~~g~---~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 12 PLQAAYLWLAVEARK---NILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred HHHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhcC
Confidence 456666777776653 589999999999999999988765
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >cd04106 Rab23_lke Rab23-like subfamily | Back alignment and domain information |
|---|
Probab=94.07 E-value=0.24 Score=49.78 Aligned_cols=21 Identities=24% Similarity=0.428 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 3 v~~vG~~~~GKTsl~~~~~~~ 23 (162)
T cd04106 3 VIVVGNGNVGKSSMIQRFVKG 23 (162)
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 789999999999999988653
|
Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G |
| >TIGR02012 tigrfam_recA protein RecA | Back alignment and domain information |
|---|
Probab=94.05 E-value=0.088 Score=61.00 Aligned_cols=24 Identities=29% Similarity=0.400 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||||+|||++|..++...
T Consensus 56 ~iteI~G~~GsGKTtLaL~~~~~~ 79 (321)
T TIGR02012 56 RIIEIYGPESSGKTTLALHAIAEA 79 (321)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999998877665
|
This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage. |
| >cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU) | Back alignment and domain information |
|---|
Probab=94.04 E-value=0.077 Score=55.98 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
+|++|++|+|||++|..++..
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~ 22 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE 22 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh
Confidence 689999999999999999876
|
CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape. |
| >TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.55 Score=60.86 Aligned_cols=31 Identities=29% Similarity=0.443 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARa 462 (1152)
....|.+++... ..+++.||+|+|||+..=.
T Consensus 6 ~~~~i~~~l~~~---~~vIi~a~TGSGKTT~vpl 36 (819)
T TIGR01970 6 VLPALRDALAAH---PQVVLEAPPGAGKSTAVPL 36 (819)
T ss_pred HHHHHHHHHHcC---CcEEEECCCCCCHHHHHHH
Confidence 455666677553 3589999999999996543
|
This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing. |
| >PHA00350 putative assembly protein | Back alignment and domain information |
|---|
Probab=94.01 E-value=0.1 Score=61.95 Aligned_cols=60 Identities=13% Similarity=0.211 Sum_probs=39.7
Q ss_pred CceEEEEeCCCCCCHHH-----------------------HHHHHHHHhh-CCCCEEEEEEcCCCCcchHHHHccceE-E
Q 036794 524 QYRIFVFDDCDTLSPDS-----------------------WSAISKVVDR-APRRVVFILVSSSLDALPHIIISRCQK-F 578 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~ea-----------------------qnaLLklLEe-pp~~VifILaTN~~dkL~~aL~SR~qv-I 578 (1152)
...+|||||++.+-+.. -..++..+.+ -..+.-||++|-++..+...++..+.. +
T Consensus 81 ~gaLIViDEaq~~~p~r~~~~~~~~~~~p~~~~~~~~~~~p~~~i~~l~~HRH~G~DIiliTQ~~~~Id~~iR~lvE~~~ 160 (399)
T PHA00350 81 RGALYVIDEAQMIFPKRLGFKMANIFKRPFTDFEPHLPEGPENFLEAFMRHRHYNWDIILLTPNIRKIHSDIRAMIEMTY 160 (399)
T ss_pred CCCEEEEECchhhcCCCccccccccccccccccccccccCCHHHHHHHHHhcccCceEEEEeCCHHHhhHHHHHhhhheE
Confidence 56899999999873221 1234445543 335677999999998888888877664 4
Q ss_pred EecCC
Q 036794 579 FFPKM 583 (1152)
Q Consensus 579 ~F~~p 583 (1152)
.+...
T Consensus 161 ~h~k~ 165 (399)
T PHA00350 161 YHKKN 165 (399)
T ss_pred EEEee
Confidence 43333
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=93.99 E-value=0.1 Score=63.81 Aligned_cols=40 Identities=13% Similarity=0.158 Sum_probs=27.6
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
++.|+++||+-. +..+....+.+.|.+...+..+|++|++
T Consensus 488 ~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHr 528 (529)
T TIGR02868 488 DAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHH 528 (529)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecC
Confidence 467999999865 5666777788888775445555555543
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PLN02840 tRNA dimethylallyltransferase | Back alignment and domain information |
|---|
Probab=93.97 E-value=1 Score=54.05 Aligned_cols=28 Identities=36% Similarity=0.511 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
...++|.||+|+|||++|..||+.+++.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~ 48 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGE 48 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence 3468999999999999999999998754
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=93.86 E-value=0.11 Score=56.00 Aligned_cols=44 Identities=20% Similarity=0.456 Sum_probs=32.3
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
+..++++||... |.......|.++|.+......+|++|.+++.+
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~ 201 (221)
T cd03244 157 KSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTI 201 (221)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 467999999754 66777788888887754456778888876643
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.21 Score=53.43 Aligned_cols=44 Identities=14% Similarity=0.286 Sum_probs=32.7
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDAL 567 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dkL 567 (1152)
+..++++||.-. |.......|.++|.+......+|++|++++.+
T Consensus 143 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~ 187 (207)
T cd03369 143 RPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTI 187 (207)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH
Confidence 468999999754 56777778888887754467788888877643
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >cd04124 RabL2 RabL2 subfamily | Back alignment and domain information |
|---|
Probab=93.81 E-value=0.16 Score=51.73 Aligned_cols=21 Identities=19% Similarity=0.357 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 3 i~vvG~~~vGKTsli~~~~~~ 23 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLMD 23 (161)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999887643
|
RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b |
| >PRK06696 uridine kinase; Validated | Back alignment and domain information |
|---|
Probab=93.77 E-value=0.1 Score=56.84 Aligned_cols=43 Identities=19% Similarity=0.231 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 427 NLVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 427 e~v~q~Lk~aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+++.|...+.. ...+..+.|.|++|+||||+|+.|+..++.
T Consensus 4 ~~~~~~la~~~~~~~~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 4 KQLIKELAEHILTLNLTRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred HHHHHHHHHHHHHhCCCCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4566677766653 344568999999999999999999999853
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.27 Score=53.93 Aligned_cols=24 Identities=21% Similarity=0.365 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
...++|+||.|.|||++.+.++..
T Consensus 30 ~~~~~l~G~n~~GKstll~~i~~~ 53 (222)
T cd03285 30 SRFLIITGPNMGGKSTYIRQIGVI 53 (222)
T ss_pred CeEEEEECCCCCChHHHHHHHHHH
Confidence 457899999999999999998854
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants | Back alignment and domain information |
|---|
Probab=93.75 E-value=0.054 Score=54.48 Aligned_cols=25 Identities=40% Similarity=0.642 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+|++|+|||++|+.|++.++..
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~ 26 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLP 26 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 7899999999999999999998754
|
Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=93.74 E-value=0.12 Score=57.53 Aligned_cols=83 Identities=14% Similarity=0.161 Sum_probs=47.9
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC--CCEEEEEEcCCCCcchHHHHccceEEE------ecCCChhHHHHHHH
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP--RRVVFILVSSSLDALPHIIISRCQKFF------FPKMKDADIIYTLQ 593 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp--~~VifILaTN~~dkL~~aL~SR~qvI~------F~~p~~~EI~eiL~ 593 (1152)
.+..++++||.-. |.......+.++|.+.. ....+|++|.+.+.+ ..+..++..+. -..-.+.++...+.
T Consensus 132 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~-~~~~d~i~~l~~~~~~~~~~~~~~~~~~~~~ 210 (246)
T cd03237 132 KDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMI-DYLADRLIVFEGEPSVNGVANPPQSLRSGMN 210 (246)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HHhCCEEEEEcCCCeeEEEeCCchHHHHHHH
Confidence 3468999999754 56666677777766632 356788888876632 22334433221 01113344556666
Q ss_pred HHHHHcCCCCCHH
Q 036794 594 WIASKEGIEIDKD 606 (1152)
Q Consensus 594 ~iakkeGl~Id~d 606 (1152)
.++..+++.+..+
T Consensus 211 ~~l~~~~~~~~~~ 223 (246)
T cd03237 211 RFLKNLDITFRRD 223 (246)
T ss_pred HHHHHCCCEEecC
Confidence 7777666665443
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=93.73 E-value=0.11 Score=64.17 Aligned_cols=42 Identities=19% Similarity=0.389 Sum_probs=30.1
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+..|+++||+-. |..+....+.+.|.+...+..+|++|++++
T Consensus 503 ~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~ 545 (588)
T PRK11174 503 PCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLE 545 (588)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChH
Confidence 467999999855 566666777777777545566677777764
|
|
| >cd04119 RJL RJL (RabJ-Like) subfamily | Back alignment and domain information |
|---|
Probab=93.68 E-value=0.71 Score=46.25 Aligned_cols=21 Identities=19% Similarity=0.436 Sum_probs=18.8
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 3 i~~vG~~~vGKTsli~~l~~~ 23 (168)
T cd04119 3 VISMGNSGVGKSCIIKRYCEG 23 (168)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999988754
|
RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. |
| >PRK05973 replicative DNA helicase; Provisional | Back alignment and domain information |
|---|
Probab=93.66 E-value=0.23 Score=55.24 Aligned_cols=25 Identities=28% Similarity=0.210 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+|+.|+||+|||+++-.|+...
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~ 88 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEA 88 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999887764
|
|
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=93.64 E-value=0.52 Score=56.04 Aligned_cols=24 Identities=25% Similarity=0.476 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||+|+||+++++.|.+..
T Consensus 136 k~iVlsGPSGvGKsTL~~~L~~~~ 159 (398)
T PLN02772 136 KPIVISGPSGVGKGTLISMLMKEF 159 (398)
T ss_pred cEEEEECCCCCCHHHHHHHHhhhc
Confidence 368999999999999999998764
|
|
| >PRK13947 shikimate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.60 E-value=0.057 Score=55.65 Aligned_cols=27 Identities=33% Similarity=0.364 Sum_probs=24.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.++|.|++|+|||++|+.||+.++..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~ 29 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGF 29 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCE
Confidence 378999999999999999999998764
|
|
| >PRK12608 transcription termination factor Rho; Provisional | Back alignment and domain information |
|---|
Probab=93.59 E-value=0.12 Score=60.98 Aligned_cols=25 Identities=24% Similarity=0.274 Sum_probs=22.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.||+||+|+|||++++.+++.+...
T Consensus 136 ~LIvG~pGtGKTTLl~~la~~i~~~ 160 (380)
T PRK12608 136 GLIVAPPRAGKTVLLQQIAAAVAAN 160 (380)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhc
Confidence 5999999999999999999988654
|
|
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.066 Score=55.96 Aligned_cols=27 Identities=26% Similarity=0.375 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|+||+||||+|+.|++.+...
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~ 29 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEP 29 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 468999999999999999999987654
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.4 Score=48.33 Aligned_cols=31 Identities=39% Similarity=0.510 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+.+.+++|+|+=|.|||+++|.|++.++...
T Consensus 13 ~~g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 13 KPGDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp SS-EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 3446899999999999999999999997653
|
They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A. |
| >TIGR00150 HI0065_YjeE ATPase, YjeE family | Back alignment and domain information |
|---|
Probab=93.57 E-value=0.15 Score=51.96 Aligned_cols=30 Identities=27% Similarity=0.420 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|.|+.|+|||++++.+++.++..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 344579999999999999999999998764
|
Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity. |
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.063 Score=55.83 Aligned_cols=27 Identities=15% Similarity=0.240 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.++|.||||+||||+|+.+++.++..
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~ 30 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFT 30 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368999999999999999999987644
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=93.56 E-value=0.046 Score=56.07 Aligned_cols=24 Identities=33% Similarity=0.623 Sum_probs=21.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
++|.||+|+||||+|+.+++.+++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~ 24 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGA 24 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCC
Confidence 478999999999999999999763
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=93.51 E-value=0.13 Score=54.01 Aligned_cols=43 Identities=19% Similarity=0.349 Sum_probs=30.1
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCC-CCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAP-RRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp-~~VifILaTN~~d 565 (1152)
.+..++++||.-. |.......+.++|.+.. ....+|++|.+.+
T Consensus 121 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~ 165 (182)
T cd03215 121 RDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELD 165 (182)
T ss_pred cCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHH
Confidence 4568999999754 66667777777776632 2467778887765
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.84 Score=53.32 Aligned_cols=26 Identities=23% Similarity=0.464 Sum_probs=23.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
++|+||||+|||++++.|++.++...
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~ 28 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ 28 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce
Confidence 78999999999999999999987654
|
|
| >PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction |
Back alignment and domain information |
|---|
Probab=93.50 E-value=0.35 Score=49.21 Aligned_cols=23 Identities=30% Similarity=0.531 Sum_probs=20.7
Q ss_pred EEcCCCchHHHHHHHHHHHHccc
Q 036794 448 FYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 448 L~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.||||+|||++|+.||+.++..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~ 23 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV 23 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE
T ss_pred CcCCCCCChHHHHHHHHHhcCcc
Confidence 57999999999999999998754
|
Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A .... |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.57 Score=49.68 Aligned_cols=43 Identities=19% Similarity=0.449 Sum_probs=30.0
Q ss_pred CCceEEEEeCCCC-CCHHHHHHHHHHHhhCCC-CEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDT-LSPDSWSAISKVVDRAPR-RVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~-~VifILaTN~~d 565 (1152)
.+..++++||... +.......+.++|.+... ...+|+++.+++
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~ 159 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKE 159 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 3458999999875 566666777777765322 367888887765
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB | Back alignment and domain information |
|---|
Probab=93.50 E-value=0.65 Score=53.35 Aligned_cols=39 Identities=26% Similarity=0.339 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.....|..+++.+ ..+||+||+|+||||+++++...+.
T Consensus 119 ~~~~~~L~~~v~~~---~~ilI~G~tGSGKTTll~al~~~i~ 157 (299)
T TIGR02782 119 AAQRDVLREAVLAR---KNILVVGGTGSGKTTLANALLAEIA 157 (299)
T ss_pred HHHHHHHHHHHHcC---CeEEEECCCCCCHHHHHHHHHHHhh
Confidence 34556777777643 3589999999999999999988764
|
The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA. |
| >PRK14529 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=93.49 E-value=0.31 Score=53.75 Aligned_cols=27 Identities=19% Similarity=0.572 Sum_probs=24.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
++|.||||+||||.++.|++.++....
T Consensus 3 I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 3 ILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 789999999999999999999886543
|
|
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.41 Score=51.75 Aligned_cols=42 Identities=12% Similarity=0.223 Sum_probs=30.0
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCC-CEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPR-RVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~-~VifILaTN~~d 565 (1152)
+.+++++||... +.......|.++|.+... ...+|++|.+.+
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~ 194 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEE 194 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchH
Confidence 457999999864 566677777777776432 557788887765
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PLN03186 DNA repair protein RAD51 homolog; Provisional | Back alignment and domain information |
|---|
Probab=93.47 E-value=0.35 Score=56.60 Aligned_cols=60 Identities=17% Similarity=0.279 Sum_probs=40.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
....++|+|+||+|||+++..++-....... ..+....+++++..+.+..+++.++.+.+
T Consensus 122 ~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~---------------~gg~~g~vlyIdtE~~f~~eRl~qia~~~ 181 (342)
T PLN03186 122 TGSITEIYGEFRTGKTQLCHTLCVTCQLPLD---------------QGGGEGKAMYIDTEGTFRPQRLIQIAERF 181 (342)
T ss_pred CceEEEEECCCCCCccHHHHHHHHHhhcchh---------------hCCCCceEEEEECCCCccHHHHHHHHHHc
Confidence 3457899999999999999888754321100 00111237777777778888888887664
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1152 | ||||
| 3glf_B | 395 | Crystal Structure Of The Ecoli Clamp Loader Bound T | 2e-34 | ||
| 3glh_B | 376 | Crystal Structure Of The E. Coli Clamp Loader Bound | 2e-34 | ||
| 3glg_B | 395 | Crystal Structure Of A Mutant (Gammat157a) E. Coli | 2e-34 | ||
| 1njg_A | 250 | Nucleotide-Free Form Of An Isolated E. Coli Clamp L | 2e-34 | ||
| 1jr3_A | 373 | Crystal Structure Of The Processivity Clamp Loader | 2e-34 | ||
| 1xxi_B | 368 | Adp Bound E. Coli Clamp Loader Complex Length = 368 | 2e-34 | ||
| 1iqp_A | 327 | Crystal Structure Of The Clamp Loader Small Subunit | 3e-15 | ||
| 2chg_A | 226 | Replication Factor C Domains 1 And 2 Length = 226 | 1e-14 | ||
| 2chq_A | 319 | Replication Factor C Adpnp Complex Length = 319 | 2e-14 | ||
| 1sxj_D | 353 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 3e-11 | ||
| 1sxj_C | 340 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 7e-09 | ||
| 1sxj_B | 323 | Crystal Structure Of The Eukaryotic Clamp Loader (R | 1e-04 |
| >pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To Primer-template Dna Length = 395 | Back alignment and structure |
|
| >pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi Peptide Length = 376 | Back alignment and structure |
|
| >pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp Loader Bound To Primer-Template Dna Length = 395 | Back alignment and structure |
|
| >pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader Gamma Subunit Length = 250 | Back alignment and structure |
|
| >pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma Complex Of E. Coli Dna Polymerase Iii Length = 373 | Back alignment and structure |
|
| >pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex Length = 368 | Back alignment and structure |
|
| >pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From Pyrococcus Furiosus Length = 327 | Back alignment and structure |
|
| >pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2 Length = 226 | Back alignment and structure |
|
| >pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex Length = 319 | Back alignment and structure |
|
| >pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 353 | Back alignment and structure |
|
| >pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 340 | Back alignment and structure |
|
| >pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader (Replication Factor C, Rfc) Bound To The Dna Sliding Clamp (Proliferating Cell Nuclear Antigen, Pcna) Length = 323 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* Length = 373 | Back alignment and structure |
|---|
Score = 224 bits (573), Expect = 4e-65
Identities = 95/356 (26%), Positives = 177/356 (49%), Gaps = 8/356 (2%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 3 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 62
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS-QYR 526
NC++ PCG C++C ++G+ ++ E+ E DLLDN V P +++
Sbjct: 63 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQYAPARGRFK 121
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 122 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 181
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQ-LSLLGQRISVPLVQELV 645
I + L+ I ++E I + AL+L+A ++GSLRDA +Q ++ ++S V ++
Sbjct: 182 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDIL----AGSY 701
G + D++ + L++ + A+ + + G+E AL+ ++ ++ I + +
Sbjct: 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAA 301
Query: 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQL 757
R ++ +TL K+L + D+ + LL+
Sbjct: 302 LGNDMAAIELRMRELA-RTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRA 356
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* Length = 250 | Back alignment and structure |
|---|
Score = 194 bits (495), Expect = 3e-56
Identities = 80/231 (34%), Positives = 130/231 (56%), Gaps = 8/231 (3%)
Query: 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467
+Q L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ L
Sbjct: 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPS-QYR 526
NC++ PCG C++C ++G+ ++ E+ E DLLDN V P +++
Sbjct: 70 NCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDN-VQYAPARGRFK 128
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
+++ D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F +
Sbjct: 129 VYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVE 188
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRIS 637
I + L+ I ++E I + AL+L+A ++GSLRDA LSL Q I+
Sbjct: 189 QIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDA------LSLTDQAIA 233
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* Length = 334 | Back alignment and structure |
|---|
Score = 147 bits (372), Expect = 8e-39
Identities = 60/353 (16%), Positives = 118/353 (33%), Gaps = 35/353 (9%)
Query: 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485
+ L + + + G G + +R L CQ + K CG C C
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 486 SHDRGKSRNIKEVGPVGNFDF---ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542
G + + P + +++ ++ + + ++ D L+ + +
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 543 AISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602
A+ K ++ P F L + + L + SRC+ + + + W++ +
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYA---VTWLS--REVT 181
Query: 603 IDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALS 662
+ +DAL S GS A + R + L Q L + LL AL+
Sbjct: 182 MSQDALLAALRLSAGSPGAALALFQG-DNWQARET--LCQALAYSVPSGDWYSLLA-ALN 237
Query: 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKE- 721
+ + A + LAT++ D L + + + L+
Sbjct: 238 HE----------------QAPARLHWLATLLMDALKRHHGAAQVTNVDVPGLVAELANHL 281
Query: 722 EMEKLRQALKTLSEAEKQLRMS---NDKLTWLTAALLQLA--PDQQYVLPSSS 769
+L+ L + +QL N +L +T LL++ VLP
Sbjct: 282 SPSRLQAILGDVCHIREQLMSVTGINRELL-ITDLLLRIEHYLQPGVVLPVPH 333
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 354 | Back alignment and structure |
|---|
Score = 138 bits (348), Expect = 1e-35
Identities = 56/282 (19%), Positives = 122/282 (43%), Gaps = 19/282 (6%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE 473
KY P++ L + L + + + + YGP+GTGK + ++ +
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVY 66
Query: 474 QPKP-----CGFCNSCISHDRGKSRNIKEVGP--VGNFDFESILDLLDNMVTSRP----- 521
+ K N + + S E+ P +GN D I +LL +
Sbjct: 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD 126
Query: 522 -----PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576
+Y+ + ++ ++L+ D+ +A+ + +++ + + I+V S+ + I S+C
Sbjct: 127 SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186
Query: 577 KFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635
P D++I L + + E I+++ KD LK IA S+G+LR + + LE ++L +
Sbjct: 187 LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALNNE- 245
Query: 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIME 677
+++ ++ + L + +VN++ R ++
Sbjct: 246 LALKSSSPIIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLY 287
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 Length = 305 | Back alignment and structure |
|---|
Score = 132 bits (333), Expect = 5e-34
Identities = 48/311 (15%), Positives = 100/311 (32%), Gaps = 30/311 (9%)
Query: 450 GPHGTGKTSCARIFARALNCQSL-------EQPKPCGFCNSCISHDRGKSRNIKEV-GPV 501
G +T RI ++ L + + K+ ++ E+
Sbjct: 1 GAKDQLET-LKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG 59
Query: 502 GNFDFESILDLLDNMVTSR-PPSQ--YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFI 558
N + I + D P + + DC+ ++ + +A K ++ P V +
Sbjct: 60 ENIGIDDIRTIKDF---LNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIV 116
Query: 559 LVSSSLDALPHIIISRCQKFFFPKMKD------ADIIYTLQWIA-SKEGIEIDKDALKLI 611
L + L I SR + K+ I + + + + +A KL
Sbjct: 117 LNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLG 176
Query: 612 ASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKN 671
A + G L ++ LE LL + +S + L G ++ +L++ S +
Sbjct: 177 AEKLSG-LMESLKVLETEKLLKKVLS----KGLEGYLACRELLERFSKVESKEFFALFDQ 231
Query: 672 LRVIMETGVEPLALMSQLATVITDIL--AGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQA 729
+ + G + L+ +L +I D R + + L
Sbjct: 232 VTNTIT-GKDAFLLIQRLTRIILHENTWESVEDQKSVSFLDSILRVKIANLNNKLTLMNI 290
Query: 730 LKTLSEAEKQL 740
L E ++ +
Sbjct: 291 LAIHRERKRGV 301
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 353 | Back alignment and structure |
|---|
Score = 130 bits (328), Expect = 6e-33
Identities = 73/354 (20%), Positives = 146/354 (41%), Gaps = 41/354 (11%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLL--YVFYGPHGTGKTSCARIFARALNCQS 471
KY P+ ++ Q+ L + K L +FYGP GTGKTS + L
Sbjct: 30 KYRPKNLDEVTAQDHAVTVLKKTL---KSANLPHMLFYGPPGTGKTSTILALTKELYGPD 86
Query: 472 LEQPKPCGFCNSCISHDRGKSRNIKEV-GPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
L + + N+ S +RG I V V NF ++ + + + P Y+I +
Sbjct: 87 LMKSRILEL-NA--SDERG----ISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIIL 139
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ D+++ D+ SA+ + ++ F L+ + + + + S+C KF F + ++ I
Sbjct: 140 DEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAID 199
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG------QRISVPLVQEL 644
L++I+ +E ++ D L+ I S G LR L+ S + I+ V+EL
Sbjct: 200 RLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEEL 259
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFT 704
G++ + L+++++ S D K + M++G ++ +++
Sbjct: 260 AGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSA-----------ASVVNQLHEYY 308
Query: 705 KDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758
+ + K Q L + +L ++ L L++++
Sbjct: 309 ITN----------DNFDTNFKN-QISWLLFTTDSRLNNGTNEHIQLLNLLVKIS 351
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A Length = 319 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 9e-32
Identities = 79/297 (26%), Positives = 131/297 (44%), Gaps = 45/297 (15%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKV-GLLYVFYGPHGTGKTSCARIFARAL----- 467
KY PRT ++VGQ+ V Q L V R+ + LL F GP GTGKT+ A AR L
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLL--FSGPPGTGKTATAIALARDLFGENW 67
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKS--RN-IKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
+E N+ S +RG R+ IKE F +
Sbjct: 68 RDNFIE-------MNA--SDERGIDVVRHKIKE--------FART--------APIGGAP 102
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL----VSSSLDALPHIIISRCQKFFF 580
++I D+ D L+ D+ +A+ + ++ + FIL VS ++ I SRC F F
Sbjct: 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP----IQSRCAVFRF 158
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL 640
+ + L I KEG++I +D L+ + S G R A L+ + +G+ +
Sbjct: 159 KPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADT 218
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDI 696
+ ++ E++ +L+ AL + + + L +M E G+ +++QL I +
Sbjct: 219 IYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM 275
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 Length = 327 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 7e-30
Identities = 74/293 (25%), Positives = 133/293 (45%), Gaps = 37/293 (12%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKV-GLLYVFYGPHGTGKTSCARIFARAL----- 467
KY P+ D+VGQ + + L + V + LL F GP G GKT+ A AR L
Sbjct: 18 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLL--FAGPPGVGKTTAALALARELFGENW 75
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKS--RN-IKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
LE N+ S +RG + R +KE F +
Sbjct: 76 RHNFLE-------LNA--SDERGINVIREKVKE--------FART--------KPIGGAS 110
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMK 584
++I D+ D L+ D+ A+ + ++ V FIL + + I SRC F F ++
Sbjct: 111 FKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLR 170
Query: 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644
D DI L++IA EG+E+ ++ L+ I ++G +R A L+ + L ++I+ V +
Sbjct: 171 DEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 230
Query: 645 VGLISDEKLVDLLDLALSADTVNTVKNLR-VIMETGVEPLALMSQLATVITDI 696
E + +++ LAL + + + LR ++++ G+ ++ Q+ + ++
Sbjct: 231 ASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL 283
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* Length = 368 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 3e-27
Identities = 45/295 (15%), Positives = 92/295 (31%), Gaps = 63/295 (21%)
Query: 419 TFRDLVGQNLVAQALSNAV----MRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
+ +VGQ +A + + G + G GTGKT+ A A+AL +
Sbjct: 42 ASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT 101
Query: 475 PKPCG---------------FCNSCISHDRGK---------------SRNIKEVGPVGNF 504
I SR +
Sbjct: 102 AIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGD 161
Query: 505 DFESILDLLDNMVTSRPPSQYR----------IFVFDDCDTLSPDSWSAISKVVDRAPRR 554
E ++ + + + +++R + D+ L +S+S +++ ++
Sbjct: 162 TGEIKSEVREQI--NAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAP 219
Query: 555 VVFIL-----------VSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEI 603
V+ + S +P ++ R + D L+ +E +E+
Sbjct: 220 VLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEM 279
Query: 604 DKDALKLIASR-SDGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGLISDEK 652
+DA ++ + SLR A + SL+ G + V ++ + L DE
Sbjct: 280 SEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDES 334
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 323 | Back alignment and structure |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 54/291 (18%), Positives = 110/291 (37%), Gaps = 35/291 (12%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-----N 468
KY P+ D+VG L + + + G G GKT+ A L
Sbjct: 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNMPHM-IISGMPGIGKTTSVHCLAHELLGRSYA 72
Query: 469 CQSLEQPKPCGFCNSCISHDRGKS--RN-IKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LE N+ S DRG RN IK +F PP ++
Sbjct: 73 DGVLE-------LNA--SDDRGIDVVRNQIK------HFA---------QKKLHLPPGKH 108
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+I + D+ D+++ + A+ + ++ F + + + + S+C + K+ D
Sbjct: 109 KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 168
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645
D++ L I E ++ D L+ I ++G +R A L+ ++ V ++V
Sbjct: 169 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIV 228
Query: 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDI 696
+ +L + D++ ++ + + G + +++ V ++
Sbjct: 229 DSPHPLIVKKMLLASNLEDSIQILRTD--LWKKGYSSIDIVTTSFRVTKNL 277
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 340 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 1e-25
Identities = 72/341 (21%), Positives = 129/341 (37%), Gaps = 62/341 (18%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL-----N 468
KY P T ++ GQN V + V K+ L +FYGP GTGKTS AR + +
Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPHL-LFYGPPGTGKTSTIVALAREIYGKNYS 76
Query: 469 CQSLEQPKPCGFCNSCISHDRGKS--RN-IKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
LE N+ S DRG RN IK+ F S +
Sbjct: 77 NMVLE-------LNA--SDDRGIDVVRNQIKD--------FAST--------RQIFSKGF 111
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
++ + D+ D ++ + +A+ +V++R + F ++++ L ++S+C +F F +
Sbjct: 112 KLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQ 171
Query: 586 ADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-----GQRISVPL 640
I + + E +++ +A K + S+G +R L+ IS +
Sbjct: 172 EAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDV 231
Query: 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDILAG 699
+ E G L +L L D L + G+ + L+ + ++ D
Sbjct: 232 IYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILED---- 287
Query: 700 SYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQL 740
Y+ + R L L++ E +
Sbjct: 288 -YELQNEETRVHL-----------------LTKLADIEYSI 310
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} Length = 226 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-25
Identities = 67/246 (27%), Positives = 108/246 (43%), Gaps = 44/246 (17%)
Query: 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKV-GLLYVFYGPHGTGKTSCARIFARAL----- 467
KY PRT ++VGQ+ V Q L V R+ + LL F GP GTGKT+ A AR L
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLL--FSGPPGTGKTATAIALARDLFGENW 67
Query: 468 NCQSLEQPKPCGFCNSCISHDRGKS--RN-IKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524
+E N+ S +RG R+ IK +F + +
Sbjct: 68 RDNFIE-------MNA--SDERGIDVVRHKIK--------EFARTAPI--------GGAP 102
Query: 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL----VSSSLDALPHIIISRCQKFFF 580
++I D+ D L+ D+ +A+ + ++ + FIL VS ++ I SRC F F
Sbjct: 103 FKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEP----IQSRCAVFRF 158
Query: 581 PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPL 640
+ + L I KEG++I +D L+ + S G R A L+ + +G+ +
Sbjct: 159 KPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADT 218
Query: 641 VQELVG 646
+ ++
Sbjct: 219 IYQITA 224
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 4e-25
Identities = 54/356 (15%), Positives = 109/356 (30%), Gaps = 49/356 (13%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYV----------------FYGPHGTG 455
T KY P + + G L N + + YGP G G
Sbjct: 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIG 89
Query: 456 KTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS---RNIKEVGPVGNFDFESILDL 512
KT+ A + A+ L LEQ N S R K+ +K + N
Sbjct: 90 KTTAAHLVAQELGYDILEQ-------N--ASDVRSKTLLNAGVKNA--LDNMSVVGYFKH 138
Query: 513 LDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAIS---KVVDRAPRRVVFI---LVSSSLDA 566
+ ++ + + D+ D +S + + + ++ I +
Sbjct: 139 NEE--AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRP 196
Query: 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTL 626
C F + I L IA +E ++D + + + + G +R L
Sbjct: 197 F----DRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL 252
Query: 627 EQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALM 686
+S + I+ + E+ + D+A ++ T + +AL
Sbjct: 253 STISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIGSRNFTLNDKIALY 312
Query: 687 SQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRM 742
++ +Y T+ + + +E + +A +S + +
Sbjct: 313 FDDFDFTPLMIQENYLSTRPSVLKP-------GQSHLEAVAEAANCISLGDIVEKK 361
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* Length = 343 | Back alignment and structure |
|---|
Score = 78.4 bits (193), Expect = 1e-15
Identities = 49/282 (17%), Positives = 104/282 (36%), Gaps = 31/282 (10%)
Query: 502 GNFDFESILDLLDNMVTSRPP--SQYRIFVFDDCDTLSPDSWS-AISKVVDRAPRRVVFI 558
N D+ +I L M + + + + + + + + ++ I
Sbjct: 57 PNTDWNAIFSLCQAM-----SLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLI 111
Query: 559 LVSSSLD------ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612
+ + L A + +R + + A + + A + +E+D A +++
Sbjct: 112 VRGNKLSKAQENAAWFTALANRSVQVTCQTPEQAQLPRWVAARAKQLNLELDDAANQVLC 171
Query: 613 SRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVK 670
+G+L LE+LSLL ++++P V++ V + +D L + +
Sbjct: 172 YCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLMGKSKRALH 231
Query: 671 NLRVIMETGVEPLALMSQLATVITDILA-------GSYDFTKDRH-----RRKFFRRQPL 718
L+ + G EP+ L+ L + ++ D+H RR L
Sbjct: 232 ILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEA-L 290
Query: 719 SKEEMEKLRQALKTLSEAEKQLRMSNDKLTW--LTAALLQLA 758
++ +LRQA++ L+ E L+ + W L L L
Sbjct: 291 NRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLC 332
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 76.8 bits (188), Expect = 3e-14
Identities = 95/695 (13%), Positives = 204/695 (29%), Gaps = 193/695 (27%)
Query: 324 RNVPDMPLVSDRSSSSTNSGAEALPLLVEASGSQSTEHAGWVHDYSGELGI--FADHLLK 381
++V DMP +S S E +++ T W E + F + +L+
Sbjct: 36 KDVQDMP----KSILSK---EEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLR 88
Query: 382 HAVD---SDLASE--GRSGGQQNLGDNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNA 436
S + +E S + + R+ R N Q + V + L A
Sbjct: 89 INYKFLMSPIKTEQRQPSMMTRMYIEQRD-RLYNDNQVFAKYN----VSRLQPYLKLRQA 143
Query: 437 VMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG-F------CNSCISHDR 489
++ + + G G+GKT A ++ F CNS
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVA---LDVCLSYKVQCKMDFKIFWLNLKNCNSP----- 195
Query: 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVD 549
E++L++L + + P+ W++ S
Sbjct: 196 -----------------ETVLEMLQKL----------------LYQIDPN-WTSRSDHSS 221
Query: 550 RAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM-KDADIIYTLQ--WIASKEGIEIDKD 606
R+ H I + ++ K ++ ++ L +
Sbjct: 222 NIKLRI-------------HSIQAELRRLLKSKPYENCLLV--LLNVQ---------NAK 257
Query: 607 ALK--------LIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLD 658
A L+ +R + D + L + L DE LL
Sbjct: 258 AWNAFNLSCKILLTTR-FKQVTDFLSA-------ATTTHISLDHHSMTLTPDEVK-SLLL 308
Query: 659 LALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPL 718
L ++L + T P L S +A I D ++ +
Sbjct: 309 KYLDCR----PQDLPREVLTT-NPRRL-SIIAESIRD----------GLATWDNWKH--V 350
Query: 719 SKEEMEKLRQA-LKTLSEAEKQLRMSNDKL------TWLTAALLQ-LAPDQQYVLPSSSA 770
+ +++ + ++ L L AE R D+L + LL + D
Sbjct: 351 NCDKLTTIIESSLNVLEPAE--YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 771 DTSFSHSPLDLENAGGR----GMTRKGGERAEISNKETGVPMNVRL-------ENFHAEN 819
+ +S ++ + + + + ++ N+ ++ + + F +++
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLE--LKVKLENEYA---LHRSIVDHYNIPKTFDSDD 463
Query: 820 -SGDFIDGNMRKGISLDRKRHTGSGMALQQKSPLSAGGRHVSGNSRNGIEEIWLEVLNRI 878
++D I H + + R V + R +LE +I
Sbjct: 464 LIPPYLDQYFYSHIG----HH----LKNIEHPERMTLFRMVFLDFR------FLE--QKI 507
Query: 879 QNNGTKEFLYREGKLISVSFGAAPTVQ--LTFRSHLTKSKAEKFKDQILQAFESVLGSPL 936
+++ T + S T+Q ++ ++ + + ++++ A L
Sbjct: 508 RHDST---------AWNASGSILNTLQQLKFYKPYICDNDPK--YERLVNAILDFLPKIE 556
Query: 937 TIEIRCESKIDTQAGFHLPLMLPAS---KDGSSQM 968
I + D + LM ++ Q+
Sbjct: 557 ENLICSKYT-DL---LRIALMAEDEAIFEEAHKQV 587
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 73.3 bits (179), Expect = 3e-13
Identities = 101/623 (16%), Positives = 178/623 (28%), Gaps = 187/623 (30%)
Query: 134 EIEMIEELGEKNLVERAGLIFWKGRQTQDVRVKTLSEQLHDIPMDSDDLISSNVQFCGSR 193
EI+ I + K+ V +FW Q+ V+ E++ I + L+S
Sbjct: 50 EIDHI--IMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI--NYKFLMSPIKTEQRQP 105
Query: 194 SGLEKTGEE-----HGGIRGYSNG-LHRVK-----RRKFRGARRAR-------------- 228
S + + E + + ++ + R++ R+ R A+
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW 165
Query: 229 -TASALRDVGGQSEM-------SVAS----NSLAQGLACPKYHMEEEDEEYGERNVTRAP 276
Q +M ++ + ++ + L Y ++ N T
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP--------NWTSRS 217
Query: 277 RNGCGIPWNWSRIHHRGKTFLDMAGRSLTSCGL-----SDSRIRKAGGASHSRNVPDMPL 331
+ I I + L + +C L +++ A + L
Sbjct: 218 DHSSNIKLRIHSIQAELRRLL--KSKPYENCLLVLLNVQNAKAWNAFNL-SCKI-----L 269
Query: 332 VSDRSSSSTNSGAEALPLLVEASGSQSTEH--AGWVHDYSGELGIFADHLLKHAVDSDLA 389
++ R T+ L + S +H D + +L DL
Sbjct: 270 LTTRFKQVTDF------LSAATTTHISLDHHSMTLTPDEV--KSLLLKYL--DCRPQDLP 319
Query: 390 SEGRSGGQQNLG-------DNRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKV 442
E + + L D N + ++ +L L A R+
Sbjct: 320 REVLTTNPRRLSIIAESIRDGLA-TWDNW-KHVNCDKLTTIIESSL--NVLEPAEYRKMF 375
Query: 443 GLLYVFYGPHGT-------------GKTSCARIFARALNCQSL--EQPKPCGFCNSCISH 487
L VF P S + L+ SL +QPK ++
Sbjct: 376 DRLSVF--PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE----STISIP 429
Query: 488 D-----RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542
+ K N + SI+D Y I D D L P
Sbjct: 430 SIYLELKVKLENEYAL-------HRSIVD------------HYNIPKTFDSDDLIPPYL- 469
Query: 543 AISKVVDRAPRRVVFILVSSSLDALPHI-----IISRCQKF-FFPKMKDADIIYT-LQWI 595
D+ + HI I ++ F ++ +++
Sbjct: 470 ------DQ------YF--------YSHIGHHLKNIEHPERMTLFRM------VFLDFRFL 503
Query: 596 ASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISV--PLVQELVGLISD--- 650
K I D+ AS GS+ + TL+QL I P + LV I D
Sbjct: 504 EQK----IRHDSTAWNAS---GSILN---TLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 651 ---EKLV-----DLLDLALSADT 665
E L+ DLL +AL A+
Sbjct: 554 KIEENLICSKYTDLLRIALMAED 576
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 49.9 bits (118), Expect = 5e-06
Identities = 92/622 (14%), Positives = 183/622 (29%), Gaps = 159/622 (25%)
Query: 621 DAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGV 680
D E Q + I + + ++ + + D+ D+ S + + ++ ++ + V
Sbjct: 8 DFETGEHQYQY--KDI-LSVFED--AFVDNFDCKDVQDMPKSILSKEEIDHI-IMSKDAV 61
Query: 681 EPLALM---------SQLATVITDILAGSYDFTKDRHRRKFFRRQP-LSKEEMEKLRQAL 730
+ + + ++L +Y F + + RQP + + R L
Sbjct: 62 SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQ--RQPSMMTRMYIEQRDRL 119
Query: 731 KTLSEAEKQLRMSNDKLTW-LTAALLQLAPDQQYVLPSSSADTSFSHSPLDLENAGGRGM 789
++ + +S + L ALL+L P + ++ G+
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----------D-----------GV 158
Query: 790 TRKGGERAEISNKETGVPMNVRLENFHAENSGDFIDGNMRKGI---SLDRKRHTGSGMAL 846
G S K + I +L + + +
Sbjct: 159 ---LG-----SGKTWVALDVCLSYKVQCKMDF---------KIFWLNLKNCNSPETVLEM 201
Query: 847 QQK------SPLSAGGRHVSGNSRNGIEEIW---------------LEVLNRIQNNGT-K 884
QK ++ H S N + I I L VL +QN
Sbjct: 202 LQKLLYQIDPNWTSRSDH-SSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWN 260
Query: 885 EFLYR-------EGKLISVSFGAAPTVQLTFRSH---LTKSKAE----KFKDQILQAF-- 928
F K ++ AA T ++ H LT + + K+ D Q
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320
Query: 929 ESVLGSPLTIEIRCESKIDTQAGFHLPLMLPASKDGSSQMVIDS-ESIIGNRGPMAGPIE 987
E + +P + I ES D A+ D + D +II + + P E
Sbjct: 321 EVLTTNPRRLSIIAESIRD----------GLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370
Query: 988 ISKR------IPRDEGI---------NGASSQ-----AQQLHSESL--EMGRTEIVEVPA 1025
K P I +LH SL + + + +P+
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430
Query: 1026 SPRETKDHAENRADYSKRASLSERKKLGEQSQCQSIVRSKVS------LAH---VIQQAE 1076
E K EN +Y+ S+ + + + ++ + + H I+ E
Sbjct: 431 IYLELKVKLEN--EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE 488
Query: 1077 GCTQ-RN-----GWSKRKAVSIAEKLEQENLRLEPRSRSLLCWKASKVTRRKICRLKIRR 1130
T R + + +K+ ++ L + K + IC +
Sbjct: 489 RMTLFRMVFLDFRF-------LEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKY 541
Query: 1131 RKPLSLLK--LVSCG-KCLSSK 1149
+ ++ + L + SK
Sbjct: 542 ERLVNAILDFLPKIEENLICSK 563
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* Length = 324 | Back alignment and structure |
|---|
Score = 72.0 bits (177), Expect = 2e-13
Identities = 60/380 (15%), Positives = 118/380 (31%), Gaps = 93/380 (24%)
Query: 403 NRNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPH-GTGKTSCAR 461
N + L QKY P T + + + + + K+ + + + P GTGKT+ A+
Sbjct: 8 TVNEKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHI-ILHSPSPGTGKTTVAK 66
Query: 462 IFARALNCQSLEQPKPCGFCNSCISHDR-GKSRN-IKEVGPVGNFDFESILDLLDNMVTS 519
+N + N S + R + +F S +
Sbjct: 67 ALCHDVNADMMF-------VNG--SDCKIDFVRGPLT--------NFAS---------AA 100
Query: 520 RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVV--------FIL----VSSSLDAL 567
+ ++ V D+ D R R + I+ + +
Sbjct: 101 SFDGRQKVIVIDEFDRSGLAE-------SQRHLRSFMEAYSSNCSIIITANNIDGIIKP- 152
Query: 568 PHIIISRCQKFFFPKMKDADIIYT-------LQWIASKEGIEI-DKDALKLIASRSDGSL 619
+ SRC+ F + D D I L I EGI I D + + ++
Sbjct: 153 ---LQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF 209
Query: 620 RDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLR-VIMET 678
R L+ S G + ++ + + D+L+ + D VK LR + +
Sbjct: 210 RKTIGELDSYSSKGV-LDAGILSLVTN--DRGAIDDVLESLKNKD----VKQLRALAPKY 262
Query: 679 GVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEK 738
+ + +LA I + + + + + + E +
Sbjct: 263 AADYSWFVGKLAEEIYSRV------------------------TPQSIIRMYEIVGENNQ 298
Query: 739 QLRMSNDKLTWLTAALLQLA 758
++ + L +QLA
Sbjct: 299 YHGIAANTELHLAYLFIQLA 318
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 384 | Back alignment and structure |
|---|
Score = 54.8 bits (131), Expect = 8e-08
Identities = 35/217 (16%), Positives = 66/217 (30%), Gaps = 15/217 (6%)
Query: 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF------ 480
A A+ V G GTGKT ++ + E +
Sbjct: 30 RDAAIAIRYFVKNEVKFSNLF-LGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVN 88
Query: 481 CNSCISHDRGKSRNIKEVGPVGNFDFESI-LDLLDNMVTSRPPSQYRIFVFDDCDTLSPD 539
C + ++ + I L + + + + I D+ DTL
Sbjct: 89 CREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKR 148
Query: 540 SWS-AISKVVDRAPRRVVFILVSSSLD----ALPHIIISRCQKFFFPKMKDADIIYTLQW 594
+ + R+ + I++S+ ++ P ++ S F + + L
Sbjct: 149 RGGDIVLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSK 208
Query: 595 IASKEGIE--IDKDALKLIASRSDGSLRDAEMTLEQL 629
A I+ D + L IA+ S DA + L
Sbjct: 209 YAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLL 245
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} Length = 386 | Back alignment and structure |
|---|
Score = 49.3 bits (117), Expect = 5e-06
Identities = 44/254 (17%), Positives = 93/254 (36%), Gaps = 23/254 (9%)
Query: 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSCI 485
+A L+ K +++ YG GTGKT+ + L+ + L + K
Sbjct: 30 RKIASILAPLYREEKPNNIFI-YGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88
Query: 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS-RPPSQYRIFVFDDCDTLSPDSWSAI 544
+ R + ++ + F SI +L +V + R + V D+ D I
Sbjct: 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDI 148
Query: 545 SKVVDRAP-----RRVVFILVSSSLD----ALPHIIIS-RCQKFFFPKMKDADI--IYTL 592
+ R ++ FI +++ + P + S ++ FP ++ I T
Sbjct: 149 LYKLSRINSEVNKSKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTK 208
Query: 593 QWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG--------QRISVPLVQEL 644
+ + + + + +KL A+ + DA L+ L + G ++ V
Sbjct: 209 RAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMA 268
Query: 645 VGLISDEKLVDLLD 658
I +++ D++
Sbjct: 269 KEEIERDRVRDIIL 282
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} Length = 447 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-04
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 4/57 (7%)
Query: 417 PRTFRDLVGQN-LVAQ--ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
P +GQ L+A L A+ + + + +GP GTGKT+ A + AR N
Sbjct: 22 PENLAQYIGQQHLLAAGKPLPRAIEAGHLHSM-ILWGPPGTGKTTLAEVIARYANAD 77
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A Length = 242 | Back alignment and structure |
|---|
Score = 42.6 bits (101), Expect = 3e-04
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL----SLLGQRISVPLVQELVGL 647
LQ A+ G+++ +D + + +R LR L++L + +++++P V+E++ L
Sbjct: 183 LQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQRKLTIPFVKEMLRL 242
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 Length = 389 | Back alignment and structure |
|---|
Score = 42.9 bits (100), Expect = 5e-04
Identities = 34/214 (15%), Positives = 58/214 (27%), Gaps = 18/214 (8%)
Query: 427 NLVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNS 483
+ L N + + G GTGKT R + +
Sbjct: 27 QQLDILLGNWLRNPGHHYPRATL-LGRPGTGKTVTLRKLWELY--KDKTTARFVYINGFI 83
Query: 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS-RPPSQYRIFVFDDCDTLSPDSWS 542
+ + + S + L +V R Y V DD L+PD S
Sbjct: 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILS 143
Query: 543 AISKVVDRAPR----RVVFILVSSSLDALPHI---IISRC--QKFFFPKMKDADIIYTLQ 593
++ A + R+ ++V + L ++ F I L
Sbjct: 144 TFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILL 203
Query: 594 WIASKEGIE--IDKDALKLIASRSDGSLRDAEMT 625
A E +D L++IA +
Sbjct: 204 DRAKAGLAEGSYSEDILQMIADITGAQTPLDTNR 237
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} Length = 387 | Back alignment and structure |
|---|
Score = 42.5 bits (99), Expect = 6e-04
Identities = 45/229 (19%), Positives = 83/229 (36%), Gaps = 20/229 (8%)
Query: 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF----CN 482
+A+ L+ A+ K + YG GTGKT+ AR+ R L ++
Sbjct: 29 RRLAEVLAPALRGEKPSNALL-YGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87
Query: 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTS-RPPSQYRIFVFDDCDTL-SPDS 540
+ R S + VG F S+ ++ + +V I V D+ D L
Sbjct: 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPG 147
Query: 541 WSAISKVVDRAP------RRVVFILVSSSLDALPHI---IISRC--QKFFFPKMKDADII 589
+ + R V + +++SL + ++ + S + FP +
Sbjct: 148 GQDLLYRITRINQELGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLR 207
Query: 590 YTLQWIASKEGIE--IDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRI 636
L+ A + +D D + L A+ + DA L+ L + G+
Sbjct: 208 DILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIA 256
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} Length = 318 | Back alignment and structure |
|---|
Score = 41.8 bits (97), Expect = 9e-04
Identities = 20/162 (12%), Positives = 45/162 (27%), Gaps = 10/162 (6%)
Query: 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-----CNS 483
+ + +++M + L Y+ + K L S + P
Sbjct: 32 IFLPIYDSLMSSQNKLFYI-TNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALE 90
Query: 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR--IFVFDDCDTL-SPDS 540
D + + S L+ L+ +T+ P ++ R + + + + L S
Sbjct: 91 LAGMDALYEKIWFAISKENLCGDIS-LEALNFYITNVPKAKKRKTLILIQNPENLLSEKI 149
Query: 541 WSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPK 582
K + ++ I V + I
Sbjct: 150 LQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFT 191
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1152 | |||
| 1jr3_A | 373 | DNA polymerase III subunit gamma; processivity, pr | 100.0 | |
| 2chq_A | 319 | Replication factor C small subunit; DNA-binding pr | 100.0 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 1iqp_A | 327 | RFCS; clamp loader, extended AAA-ATPase domain, co | 100.0 | |
| 1sxj_B | 323 | Activator 1 37 kDa subunit; clamp loader, processi | 100.0 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 100.0 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 100.0 | |
| 3u61_B | 324 | DNA polymerase accessory protein 44; AAA+, ATP hyd | 100.0 | |
| 1jr3_D | 343 | DNA polymerase III, delta subunit; processivity, p | 100.0 | |
| 1a5t_A | 334 | Delta prime, HOLB; zinc finger, DNA replication; 2 | 100.0 | |
| 2gno_A | 305 | DNA polymerase III, gamma subunit-related protein; | 99.97 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 99.96 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 99.96 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 99.94 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 99.9 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 99.89 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 99.88 | |
| 1hqc_A | 324 | RUVB; extended AAA-ATPase domain, complex with nuc | 99.88 | |
| 2c9o_A | 456 | RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP- | 99.86 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.83 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 99.81 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 99.8 | |
| 3vfd_A | 389 | Spastin; ATPase, microtubule severing, hydrolase; | 99.8 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 99.79 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 99.79 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 99.78 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 99.78 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 99.77 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 99.77 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 99.77 | |
| 4b4t_J | 405 | 26S protease regulatory subunit 8 homolog; hydrola | 99.77 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 99.77 | |
| 2qp9_X | 355 | Vacuolar protein sorting-associated protein 4; ATP | 99.76 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 99.75 | |
| 1g8p_A | 350 | Magnesium-chelatase 38 kDa subunit; parallel beta | 99.74 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 99.74 | |
| 4b4t_I | 437 | 26S protease regulatory subunit 4 homolog; hydrola | 99.74 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 99.74 | |
| 4b4t_M | 434 | 26S protease regulatory subunit 6A; hydrolase, AAA | 99.73 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 99.73 | |
| 4b4t_L | 437 | 26S protease subunit RPT4; hydrolase, AAA-atpases, | 99.73 | |
| 2zan_A | 444 | Vacuolar protein sorting-associating protein 4B; S | 99.73 | |
| 4b4t_H | 467 | 26S protease regulatory subunit 7 homolog; hydrola | 99.73 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 99.73 | |
| 4b4t_K | 428 | 26S protease regulatory subunit 6B homolog; hydrol | 99.72 | |
| 2r44_A | 331 | Uncharacterized protein; putative ATPase, structur | 99.7 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 99.7 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 99.7 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 99.69 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 99.68 | |
| 1ojl_A | 304 | Transcriptional regulatory protein ZRAR; response | 99.68 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.68 | |
| 3pxg_A | 468 | Negative regulator of genetic competence CLPC/MEC; | 99.65 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 99.63 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.62 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.62 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.62 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 99.61 | |
| 3te6_A | 318 | Regulatory protein SIR3; heterochromatin, gene sil | 99.61 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 99.61 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.6 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 99.6 | |
| 3hu3_A | 489 | Transitional endoplasmic reticulum ATPase; VCP, tr | 99.6 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.59 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 99.58 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.55 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.55 | |
| 1r6b_X | 758 | CLPA protein; AAA+, N-terminal domain, CLPS, cryst | 99.55 | |
| 3pxi_A | 758 | Negative regulator of genetic competence CLPC/MEC; | 99.54 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 99.54 | |
| 1qvr_A | 854 | CLPB protein; coiled coil, AAA ATPase, chaperone; | 99.53 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 99.51 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.47 | |
| 1ny5_A | 387 | Transcriptional regulator (NTRC family); AAA+ ATPa | 99.46 | |
| 3cf2_A | 806 | TER ATPase, transitional endoplasmic reticulum ATP | 99.45 | |
| 1w5s_A | 412 | Origin recognition complex subunit 2 ORC2; replica | 99.43 | |
| 3dzd_A | 368 | Transcriptional regulator (NTRC family); sigma43 a | 99.42 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.4 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 99.4 | |
| 1g41_A | 444 | Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dep | 99.37 | |
| 3nbx_X | 500 | ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structu | 99.33 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 99.31 | |
| 3f9v_A | 595 | Minichromosome maintenance protein MCM; replicativ | 99.29 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 99.2 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.11 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 99.1 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 99.03 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 98.92 | |
| 2fna_A | 357 | Conserved hypothetical protein; structural genomic | 98.85 | |
| 3f8t_A | 506 | Predicted ATPase involved in replication control, | 98.7 | |
| 1u0j_A | 267 | DNA replication protein; AAA+ protein, P-loop atpa | 98.69 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 98.66 | |
| 3upu_A | 459 | ATP-dependent DNA helicase DDA; RECA-like domain, | 98.53 | |
| 1tue_A | 212 | Replication protein E1; helicase, replication, E1E | 98.46 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.41 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 98.36 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 98.32 | |
| 4akg_A | 2695 | Glutathione S-transferase class-MU 26 kDa isozyme | 98.04 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 97.93 | |
| 1z6t_A | 591 | APAF-1, apoptotic protease activating factor 1; ca | 97.68 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 97.65 | |
| 1jql_B | 140 | DNA polymerase III, delta subunit; processivity cl | 97.6 | |
| 2r2a_A | 199 | Uncharacterized protein; zonular occludens toxin, | 97.51 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 97.44 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 97.44 | |
| 3vkg_A | 3245 | Dynein heavy chain, cytoplasmic; AAA+ protein, mol | 97.44 | |
| 2a5y_B | 549 | CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis | 97.37 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 97.03 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 97.0 | |
| 3e1s_A | 574 | Exodeoxyribonuclease V, subunit RECD; alpha and be | 96.98 | |
| 2fz4_A | 237 | DNA repair protein RAD25; RECA-like domain, DNA da | 96.83 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 96.64 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 96.5 | |
| 1w36_D | 608 | RECD, exodeoxyribonuclease V alpha chain; recombin | 96.5 | |
| 2r8r_A | 228 | Sensor protein; KDPD, PFAM02702, MCSG, structural | 96.45 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 96.42 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 96.27 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.27 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 96.22 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 96.21 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 96.03 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 95.87 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 95.85 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 95.81 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 95.8 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 95.77 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 95.72 | |
| 2iut_A | 574 | DNA translocase FTSK; nucleotide-binding, chromoso | 95.7 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 95.57 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 95.56 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 95.56 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 95.56 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 95.52 | |
| 1xx6_A | 191 | Thymidine kinase; NESG, northeast structural genom | 95.43 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 95.35 | |
| 3b6e_A | 216 | Interferon-induced helicase C domain-containing P; | 95.33 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 95.27 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 95.25 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.2 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 95.15 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 95.14 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 95.13 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 95.06 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 95.06 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 95.05 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 94.98 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 94.98 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 94.96 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.94 | |
| 3h1t_A | 590 | Type I site-specific restriction-modification syst | 94.85 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 94.82 | |
| 2j9r_A | 214 | Thymidine kinase; TK1, DNK, lasso, transferase, AT | 94.81 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 94.75 | |
| 1qde_A | 224 | EIF4A, translation initiation factor 4A; DEAD box | 94.63 | |
| 1w4r_A | 195 | Thymidine kinase; type II, human, cytosolic, phosp | 94.51 | |
| 1t6n_A | 220 | Probable ATP-dependent RNA helicase; RECA-like fol | 94.46 | |
| 2gxq_A | 207 | Heat resistant RNA dependent ATPase; RNA helicase, | 94.44 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 94.41 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.28 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 94.27 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 94.14 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 94.12 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 94.1 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 94.07 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 94.04 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 94.0 | |
| 3bor_A | 237 | Human initiation factor 4A-II; translation initiat | 94.0 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 93.99 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 93.94 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 93.92 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 93.91 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 93.9 | |
| 3io5_A | 333 | Recombination and repair protein; storage dimer, i | 93.9 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 93.9 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 93.86 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 93.67 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 93.65 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 93.58 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 93.57 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 93.53 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 93.52 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 93.48 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 93.47 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 93.46 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 93.46 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 93.45 | |
| 1vec_A | 206 | ATP-dependent RNA helicase P54; DEAD-box protein, | 93.45 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 93.43 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 93.42 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 93.42 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 93.39 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 93.36 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 93.31 | |
| 3vkw_A | 446 | Replicase large subunit; alpha/beta domain, helica | 93.22 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 93.19 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 93.17 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 93.14 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 93.1 | |
| 3fmo_B | 300 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 93.04 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 93.02 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 93.01 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 93.0 | |
| 2orv_A | 234 | Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2 | 92.95 | |
| 2fwr_A | 472 | DNA repair protein RAD25; DNA unwinding, XPB, DNA | 92.94 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 92.9 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 92.83 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 92.81 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 92.78 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 92.77 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 92.69 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 92.67 | |
| 3cmu_A | 2050 | Protein RECA, recombinase A; homologous recombinat | 92.65 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 92.64 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 92.57 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 92.56 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 92.56 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 92.53 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 92.52 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 92.49 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 92.48 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 92.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 92.47 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 92.46 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 92.42 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 92.41 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 92.37 | |
| 1rif_A | 282 | DAR protein, DNA helicase UVSW; bacteriophage, REC | 92.36 | |
| 2pl3_A | 236 | Probable ATP-dependent RNA helicase DDX10; DEAD, s | 92.33 | |
| 1hv8_A | 367 | Putative ATP-dependent RNA helicase MJ0669; RNA-bi | 92.27 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 92.27 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 92.14 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 92.13 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 92.12 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 92.11 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 92.11 | |
| 3pey_A | 395 | ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, A | 92.1 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 92.02 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 92.01 | |
| 2j37_W | 504 | Signal recognition particle 54 kDa protein (SRP54) | 91.93 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 91.9 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 91.87 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 91.86 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 91.84 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 91.83 | |
| 1xti_A | 391 | Probable ATP-dependent RNA helicase P47; alpha-bet | 91.82 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 91.81 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 91.78 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 91.77 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 91.77 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 91.69 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 91.67 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 91.66 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 91.66 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 91.64 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 91.62 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 91.6 | |
| 1s2m_A | 400 | Putative ATP-dependent RNA helicase DHH1; ATP-bind | 91.58 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 91.55 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 91.52 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 91.47 | |
| 4b3f_X | 646 | DNA-binding protein smubp-2; hydrolase, helicase; | 91.46 | |
| 3fht_A | 412 | ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box | 91.46 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 91.44 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 91.42 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 91.41 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 91.34 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 91.32 | |
| 3ber_A | 249 | Probable ATP-dependent RNA helicase DDX47; DEAD, A | 91.28 | |
| 2v6i_A | 431 | RNA helicase; membrane, hydrolase, transmembrane, | 91.27 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 91.17 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 91.15 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 91.1 | |
| 3dkp_A | 245 | Probable ATP-dependent RNA helicase DDX52; DEAD, A | 91.06 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 91.02 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 90.99 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 90.97 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 90.94 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 90.93 | |
| 3iuy_A | 228 | Probable ATP-dependent RNA helicase DDX53; REC-A-l | 90.93 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 90.92 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 90.86 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 90.85 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 90.84 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 90.84 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 90.83 | |
| 2oxc_A | 230 | Probable ATP-dependent RNA helicase DDX20; DEAD, s | 90.82 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 90.77 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 90.77 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 90.77 | |
| 1q0u_A | 219 | Bstdead; DEAD protein, RNA binding protein; 1.85A | 90.73 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 90.73 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 90.72 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 90.65 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 90.65 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 90.61 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 90.58 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 90.57 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 90.57 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 90.47 | |
| 3ly5_A | 262 | ATP-dependent RNA helicase DDX18; alpha-beta, stru | 90.46 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 90.34 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 90.31 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 90.28 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 90.28 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 90.26 | |
| 1wp9_A | 494 | ATP-dependent RNA helicase, putative; ATPase, DNA | 90.26 | |
| 3fmp_B | 479 | ATP-dependent RNA helicase DDX19B; nuclear porin, | 90.23 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 90.15 | |
| 2oca_A | 510 | DAR protein, ATP-dependent DNA helicase UVSW; ATP- | 90.15 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 90.13 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 90.11 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 90.09 | |
| 1fuu_A | 394 | Yeast initiation factor 4A; IF4A, helicase, DEAD-b | 89.95 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 89.94 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 89.91 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 89.91 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 89.82 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 89.73 | |
| 3eiq_A | 414 | Eukaryotic initiation factor 4A-I; PDCD4, anti-onc | 89.69 | |
| 2zpa_A | 671 | Uncharacterized protein YPFI; RNA modification enz | 89.66 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 89.61 | |
| 3e2i_A | 219 | Thymidine kinase; Zn-binding, ATP-binding, DNA syn | 89.57 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 89.45 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 89.42 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 89.36 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 89.33 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 89.32 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 89.31 | |
| 2z0m_A | 337 | 337AA long hypothetical ATP-dependent RNA helicase | 89.3 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 89.28 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 89.27 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 89.24 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 89.24 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 89.23 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 89.21 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 89.2 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 89.17 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 89.07 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 89.05 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 88.95 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 88.93 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 88.92 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 88.86 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 88.74 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 88.73 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 88.72 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 88.68 | |
| 2whx_A | 618 | Serine protease/ntpase/helicase NS3; transcription | 88.65 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 88.61 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 88.41 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 88.28 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 88.25 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 88.24 | |
| 2p6r_A | 702 | Afuhel308 helicase; protein-DNA complex, SF2 helic | 88.2 | |
| 2eyq_A | 1151 | TRCF, transcription-repair coupling factor; MFD, S | 88.17 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 88.14 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 88.13 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 88.11 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 88.05 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 88.03 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 88.02 | |
| 2xxa_A | 433 | Signal recognition particle protein; protein trans | 87.88 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 87.85 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 87.84 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 87.78 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 87.71 | |
| 2gk6_A | 624 | Regulator of nonsense transcripts 1; UPF1, helicas | 87.63 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 87.6 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 87.58 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 87.58 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 87.57 | |
| 2va8_A | 715 | SSO2462, SKI2-type helicase; hydrolase, DNA repair | 87.55 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 87.54 | |
| 3fho_A | 508 | ATP-dependent RNA helicase DBP5; mRNA export, ATPa | 87.45 | |
| 4dkx_A | 216 | RAS-related protein RAB-6A; GTP binding fold, memb | 87.28 | |
| 1wrb_A | 253 | DJVLGB; RNA helicase, DEAD BOX, VASA, structural g | 87.26 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 87.24 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 87.23 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 87.22 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 87.22 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 87.16 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 87.14 | |
| 2z83_A | 459 | Helicase/nucleoside triphosphatase; hydrolase, mem | 87.11 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 87.1 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 87.03 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 86.94 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 86.93 | |
| 2jlq_A | 451 | Serine protease subunit NS3; ribonucleoprotein, nu | 86.89 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 86.84 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 86.83 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 86.81 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 86.77 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 86.77 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 86.74 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 86.74 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 86.71 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 86.65 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 86.53 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 86.51 | |
| 1yks_A | 440 | Genome polyprotein [contains: flavivirin protease | 86.46 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 86.44 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 86.4 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 86.39 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 86.34 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 86.27 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 86.23 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 86.2 | |
| 3fe2_A | 242 | Probable ATP-dependent RNA helicase DDX5; DEAD, AD | 86.12 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 86.11 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 86.09 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 86.09 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 86.04 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 85.92 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 85.74 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 85.65 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 85.61 | |
| 2j0s_A | 410 | ATP-dependent RNA helicase DDX48; mRNA processing, | 85.6 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 85.48 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 85.46 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 85.46 | |
| 1gm5_A | 780 | RECG; helicase, replication restart; HET: DNA ADP; | 85.38 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 85.35 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 85.29 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 85.27 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 85.25 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 85.18 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 85.14 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 85.05 | |
| 2wjy_A | 800 | Regulator of nonsense transcripts 1; nonsense medi | 84.98 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 84.92 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 84.87 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 84.78 | |
| 2wv9_A | 673 | Flavivirin protease NS2B regulatory subunit, FLAV | 84.7 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 84.68 | |
| 2db3_A | 434 | ATP-dependent RNA helicase VASA; DEAD-BOX, protein | 84.56 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 84.47 | |
| 2aya_A | 128 | DNA polymerase III subunit TAU; KH-fold, C-terminu | 84.43 | |
| 2v1x_A | 591 | ATP-dependent DNA helicase Q1; DNA strand annealin | 84.42 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 84.37 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 84.21 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 84.13 | |
| 3rc3_A | 677 | ATP-dependent RNA helicase SUPV3L1, mitochondrial; | 83.97 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 83.76 | |
| 2axn_A | 520 | 6-phosphofructo-2-kinase/fructose-2,6- biphosphata | 83.74 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 83.72 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 83.67 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 83.64 | |
| 3i5x_A | 563 | ATP-dependent RNA helicase MSS116; protein-RNA com | 83.58 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 83.49 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 83.39 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 83.01 | |
| 2xzl_A | 802 | ATP-dependent helicase NAM7; hydrolase-RNA complex | 83.0 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 82.96 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 82.85 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 82.8 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 82.79 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 82.75 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 82.7 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 82.66 | |
| 1oyw_A | 523 | RECQ helicase, ATP-dependent DNA helicase; winged | 82.64 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 82.57 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 82.57 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 82.52 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 82.48 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 82.45 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 82.4 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 82.4 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 82.36 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 82.33 | |
| 2xgj_A | 1010 | ATP-dependent RNA helicase DOB1; hydrolase-RNA com | 82.3 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 82.26 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 82.12 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 82.09 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 82.09 | |
| 2zj8_A | 720 | DNA helicase, putative SKI2-type helicase; RECA fo | 82.03 | |
| 2e0g_A | 107 | Chromosomal replication initiator protein DNAA; do | 81.81 | |
| 3o8b_A | 666 | HCV NS3 protease/helicase; ntpase, RNA, translocat | 81.78 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 81.67 | |
| 3l9o_A | 1108 | ATP-dependent RNA helicase DOB1; REC-A fold, winge | 81.6 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 81.53 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 81.46 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 80.73 | |
| 4a4z_A | 997 | Antiviral helicase SKI2; hydrolase, ATPase, mRNA d | 80.69 | |
| 2j69_A | 695 | Bacterial dynamin-like protein; FZO, FZL, GTPase, | 80.62 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 80.59 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 80.35 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 80.32 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 80.28 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 80.27 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 80.24 | |
| 1bif_A | 469 | 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; | 80.16 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 80.09 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 80.06 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 80.01 |
| >1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-43 Score=392.59 Aligned_cols=352 Identities=26% Similarity=0.435 Sum_probs=320.4
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+.+|.+||+|.+|++++|++.+++.|.+++..++.+++|||+||+|||||++|+++++.++|.......||+.|..|..
T Consensus 2 ~~~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 2 SYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp -CCCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred CcHHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 47899999999999999999999999999999999999999999999999999999999999987667789999999999
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..+...+++++++....+.+.++++++.+...|..++++||||||+|.++...++.|++++++++.+++||++|+++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~~ 161 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQK 161 (373)
T ss_dssp HHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESCGGG
T ss_pred HhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 99998889999887666667788999999888888888999999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELV 645 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elV 645 (1152)
+.+++.+||..+.|++++.+++..+|..+++++|+.+++++++.|+..++||+|.+.++++++..+ .+.||.++|.+++
T Consensus 162 l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~~~~ 241 (373)
T 1jr3_A 162 LPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAML 241 (373)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHHHHT
T ss_pred CcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999999998766 4579999999999
Q ss_pred hccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh----HHHHHHhCCCCcc
Q 036794 646 GLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH----RRKFFRRQPLSKE 721 (1152)
Q Consensus 646 g~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~----~~~~~~r~~ls~~ 721 (1152)
+....+.+|++++++..++...++..+..|...|.+|..++..|.++|++++..+........ ....+ .+.+.++
T Consensus 242 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~-~~~a~~~ 320 (373)
T 1jr3_A 242 GTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRM-RELARTI 320 (373)
T ss_dssp TCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHH-HHHHHHS
T ss_pred CCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHH-HHHHHhC
Confidence 999999999999999999999999999999999999999999999999999987653221111 11112 2234589
Q ss_pred cHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 722 EMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 722 s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.|.+++..|.++|.++|.+.++++.||.++++++.
T Consensus 321 ~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~ 358 (373)
T 1jr3_A 321 PPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALA 358 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999985
|
| >2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-38 Score=346.73 Aligned_cols=310 Identities=24% Similarity=0.359 Sum_probs=272.0
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+.+|.+||+|.+|++++|++.+++.|.+++..++.++ |||+||+|||||++|+++++.+.+...
T Consensus 3 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~-------------- 67 (319)
T 2chq_A 3 NFEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENW-------------- 67 (319)
T ss_dssp ---CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTCH--------------
T ss_pred ccccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCe-EEEECcCCcCHHHHHHHHHHHhcCCcc--------------
Confidence 35799999999999999999999999999999988887 999999999999999999999875421
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHh-hCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMV-TSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~-~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+++++.....+.+.+++++..+. ..++. ++++||||||+|.++.+.+++|++++++++.+++||++||.+
T Consensus 68 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 142 (319)
T 2chq_A 68 -----RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYV 142 (319)
T ss_dssp -----HHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEEESCG
T ss_pred -----cCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCh
Confidence 01133343333333344444444443 44554 668999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
.++.++|.+||..+.|++++.+++..+|..++.++|+.+++++++.|+..++||+|.++++|++++.+++.||.++|.++
T Consensus 143 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~~~~i~~~~v~~~ 222 (319)
T 2chq_A 143 SRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQI 222 (319)
T ss_dssp GGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHSSSCBCHHHHHHH
T ss_pred hhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888778999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIME-TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL~-~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++......+|++++++..+|...+++.+.+|+. .|.+|..++..|.++++.+ +++.
T Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l-----------------------~~~~ 279 (319)
T 2chq_A 223 TATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM-----------------------PIKD 279 (319)
T ss_dssp TTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS-----------------------CSCT
T ss_pred HCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------cCCH
Confidence 999999999999999999999999999999998 9999999999988876632 4777
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.+++..+.++|.++|.+.++++.||.+++++|.
T Consensus 280 ~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~ 315 (319)
T 2chq_A 280 SLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLST 315 (319)
T ss_dssp THHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 889999999999999999999999999999999984
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=349.83 Aligned_cols=309 Identities=19% Similarity=0.317 Sum_probs=279.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.+||||.+|++++||+.+++.|..++..++.+| |||+||+|||||++|+++++.+.+...
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~--------------- 75 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNY--------------- 75 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSH---------------
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCCc---------------
Confidence 6799999999999999999999999999999999998 999999999999999999999986421
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHh--hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMV--TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~--~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...+.+++.....+.+.+++.+..+. ..++.+.++|+||||+|.|+.+++++|++++|+++.++.||++||.+.
T Consensus 76 ----~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~n~~~ 151 (340)
T 1sxj_C 76 ----SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAH 151 (340)
T ss_dssp ----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----cceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEEecCcc
Confidence 12356666655566788888777655 344556789999999999999999999999999999999999999999
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-----CCCHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-----RISVPL 640 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~-----~IT~Ed 640 (1152)
++.++|.+||+.+.|.+++.+++.+++..+++.+++.+++++++.++..++|++|.++++|+.++.+.+ .||.++
T Consensus 152 ~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~it~~~ 231 (340)
T 1sxj_C 152 KLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDV 231 (340)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHH
T ss_pred ccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccccccHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999877654 699999
Q ss_pred HHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHH-hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCC
Q 036794 641 VQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIME-TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLS 719 (1152)
Q Consensus 641 V~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~-~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls 719 (1152)
|.++++......++++++++..+|...|+.++..|+. .|++|..|+..|..+++.+
T Consensus 232 v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~----------------------- 288 (340)
T 1sxj_C 232 IYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY----------------------- 288 (340)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS-----------------------
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------
Confidence 9999999999999999999999999999999999998 9999999999988877632
Q ss_pred ccc-HHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 720 KEE-MEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 720 ~~s-~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.++ ...+.+++..+.++|.+||.+.++.+.||.++++++.
T Consensus 289 ~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~ 329 (340)
T 1sxj_C 289 ELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKA 329 (340)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHH
Confidence 255 6789999999999999999999999999999999984
|
| >1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=338.65 Aligned_cols=310 Identities=24% Similarity=0.365 Sum_probs=274.3
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.+||+|.+|++++|++.+++.|..++..++.++ |||+||+|||||++|+++++.+.+...
T Consensus 11 ~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~~-------------- 75 (327)
T 1iqp_A 11 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENW-------------- 75 (327)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGGH--------------
T ss_pred cCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcc--------------
Confidence 35699999999999999999999999999999998877 999999999999999999999876421
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHH-hhCCCC-CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNM-VTSRPP-SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a-~~~P~~-a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+.++++....+.+.+++.+... ...|+. ++++||||||+|.++.+.+++|++++++++.+++||++|+.+
T Consensus 76 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~~~~~ 150 (327)
T 1iqp_A 76 -----RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 150 (327)
T ss_dssp -----HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----cCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEEeCCc
Confidence 1124445443333344445544443 344444 678999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
+++.+++.+||..+.|++++.+++..++..++..+++.+++++++.|+..++||+|.++++|++++.....||.++|.++
T Consensus 151 ~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~~~i~~~~v~~~ 230 (327)
T 1iqp_A 151 SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 230 (327)
T ss_dssp GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999887778999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~LL-~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++....++++++++++..++...+++.++.++ ..|.+|..++..|..+++.+ +++.
T Consensus 231 ~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~-----------------------~~~~ 287 (327)
T 1iqp_A 231 ASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL-----------------------PIEE 287 (327)
T ss_dssp TTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS-----------------------SSCH
T ss_pred HCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc-----------------------cCCH
Confidence 99999999999999999999999999999999 99999999999988875421 5888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
+.+.+++..+.++|.++|++.++++.||.+++++|.
T Consensus 288 ~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~ 323 (327)
T 1iqp_A 288 PKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTL 323 (327)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999973
|
| >1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-35 Score=324.10 Aligned_cols=307 Identities=15% Similarity=0.262 Sum_probs=274.3
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|++++|++.+++.|.+++..++.++ |||+||+|+|||++|+++++.+.|...
T Consensus 8 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~--------------- 71 (323)
T 1sxj_B 8 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSY--------------- 71 (323)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGH---------------
T ss_pred cCcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCcc---------------
Confidence 4689999999999999999999999999999998888 999999999999999999999876421
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHh--hCCC-CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMV--TSRP-PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~--~~P~-~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...+++++.....+.+.++++++.+. ..++ .++++||||||+|.++...+++|++++++++.+++||++|+.+
T Consensus 72 ----~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 72 ----ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp ----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ----cCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEEeCCh
Confidence 12355666555556788888888765 3444 4558999999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
.++.+++.+||..+.|++++.+++..+|..++..+|+.+++++++.|+..++||+|.++++|++++...+.|+.++|.++
T Consensus 148 ~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~~~~i~~~~v~~~ 227 (323)
T 1sxj_B 148 NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKI 227 (323)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHH
T ss_pred hhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999876678999999999
Q ss_pred HhccchhhHHHHHHHHHcCCHHHHHHHHHH-HHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccH
Q 036794 645 VGLISDEKLVDLLDLALSADTVNTVKNLRV-IMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 645 Vg~v~ee~ifdLldAils~d~~~ALk~L~~-LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~ 723 (1152)
++......+++++++ ++...++.++.. |+..|.++..++..+..+++.+ ..++.
T Consensus 228 ~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l----------------------~~~~~ 282 (323)
T 1sxj_B 228 VDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNL----------------------AQVKE 282 (323)
T ss_dssp HTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTC----------------------TTSCH
T ss_pred HCCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------ccCCH
Confidence 999988999999987 899999999998 9889999999888877765532 23788
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
..+.++++.|.++|.++|.+.++++.||.++++++.
T Consensus 283 ~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~ 318 (323)
T 1sxj_B 283 SVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHK 318 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999974
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-35 Score=330.05 Aligned_cols=313 Identities=21% Similarity=0.346 Sum_probs=269.9
Q ss_pred cccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 405 NGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
+....+|.+||+|.+|++++|++.+++.|..++..+..++ +||+||||||||++|+++++.+++....
T Consensus 21 ~~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~~~----------- 88 (353)
T 1sxj_D 21 SLAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLM----------- 88 (353)
T ss_dssp -----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHHH-----------
T ss_pred cccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHhCCCccc-----------
Confidence 4557899999999999999999999999999999988877 8999999999999999999998753100
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR------------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP 552 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P------------~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp 552 (1152)
...+.++++....+.+.+++.+....... ..+.++||||||+|.++...+++|+++|++++
T Consensus 89 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~~ 161 (353)
T 1sxj_D 89 -------KSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYS 161 (353)
T ss_dssp -------TTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTT
T ss_pred -------ccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhcC
Confidence 01244555444455666666555443221 12467899999999999999999999999999
Q ss_pred CCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 553 RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 553 ~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
.+++||++||.+..+.+++.+||..+.|++++.+++..+|..++..+++.+++++++.|+.+++||+|.++++|++++.+
T Consensus 162 ~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~ 241 (353)
T 1sxj_D 162 GVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKG 241 (353)
T ss_dssp TTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHH
T ss_pred CCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998766
Q ss_pred C-C-----CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcc
Q 036794 633 G-Q-----RISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKD 706 (1152)
Q Consensus 633 g-~-----~IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g 706 (1152)
. . .||.++|.++++....+.++++++++..++...++.++++++..|++|..|+..|..+++
T Consensus 242 ~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~------------ 309 (353)
T 1sxj_D 242 AQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI------------ 309 (353)
T ss_dssp HHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH------------
T ss_pred cCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH------------
Confidence 2 2 699999999999998999999999999999999999999999999999999998887653
Q ss_pred hhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 707 RHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 707 ~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
....++...+.+++..|.++|.+||.+.++.+.||.++++|+
T Consensus 310 ----------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~ 351 (353)
T 1sxj_D 310 ----------TNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKIS 351 (353)
T ss_dssp ----------HCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred ----------HhccCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 123678899999999999999999999999999999999986
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=335.60 Aligned_cols=322 Identities=18% Similarity=0.248 Sum_probs=253.9
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHH-HhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--------CCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAV-MRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--------QPKPCG 479 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL-~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--------~~epcg 479 (1152)
.+|++||||++|++++||+.+++.|.+++ ..++.++ |||+||+|+|||++++++++++.+.... ...||+
T Consensus 2 ~~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~ 80 (354)
T 1sxj_E 2 SLWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN 80 (354)
T ss_dssp --CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC-------------
T ss_pred CcchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc
Confidence 38999999999999999999999999999 8888888 9999999999999999999988665321 223566
Q ss_pred CCCccccccCCCccceEEeCCCCCC--CHHHHHHHHHHHhhC-CC---------CCCceEEEEeCCCCCCHHHHHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNF--DFESILDLLDNMVTS-RP---------PSQYRIFVFDDCDTLSPDSWSAISKV 547 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~--~vdeIreLle~a~~~-P~---------~a~~kVVIIDEID~Ls~eaqnaLLkl 547 (1152)
.|..|..+... .++++++.... ....++++++.+... +. .++++||||||++.|...++++|+++
T Consensus 81 ~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~ 157 (354)
T 1sxj_E 81 RKLELNVVSSP---YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRT 157 (354)
T ss_dssp -----CCEECS---SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHH
T ss_pred ccceeeeeccc---ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHH
Confidence 65555444332 24455443211 112466666665322 21 34789999999999999999999999
Q ss_pred HhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCHHHHHHHH
Q 036794 548 VDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIASRSDGSLRDAEMTL 626 (1152)
Q Consensus 548 LEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id-~dALelLAe~s~GDLR~Ain~L 626 (1152)
|++++.++.||++|+++++++++|.+||..+.|++++.+++..+|..++.++|+.++ +++++.|+..++||+|.++++|
T Consensus 158 le~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l 237 (354)
T 1sxj_E 158 MEKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLML 237 (354)
T ss_dssp HHHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHH
Confidence 999989999999999999999999999999999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHhCC-CCCHHHHHHHHhccchhhHHHHHHHHHcCCHHH----HHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchh
Q 036794 627 EQLSLLGQ-RISVPLVQELVGLISDEKLVDLLDLALSADTVN----TVKNLRVIMETGVEPLALMSQLATVITDILAGSY 701 (1152)
Q Consensus 627 EkLsLlg~-~IT~EdV~elVg~v~ee~ifdLldAils~d~~~----ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~ 701 (1152)
++++.+.+ .||.+++ +.....++.+|+++++++.++... +...+..|+..|.++..|+.+|..++.
T Consensus 238 ~~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~------- 308 (354)
T 1sxj_E 238 ESMALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLL------- 308 (354)
T ss_dssp THHHHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTT-------
T ss_pred HHHHHhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-------
Confidence 99988765 5876554 222334578899999999865544 445566777889999988876654221
Q ss_pred hhhcchhHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 702 DFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 702 ~~~~g~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
.+.+++...+.++++.+.++|.++|.+.++.+.||.+++++|
T Consensus 309 ---------------~~~~~~~~~l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~ 350 (354)
T 1sxj_E 309 ---------------DVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVM 350 (354)
T ss_dssp ---------------TCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHH
T ss_pred ---------------hccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 123688899999999999999999999999999999999987
|
| >3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-35 Score=329.84 Aligned_cols=299 Identities=17% Similarity=0.232 Sum_probs=253.5
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
....+|.+||+|.+|++++|++.+++.|.+++..++.++.|||+||||||||++|+++++.+++.
T Consensus 11 ~~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~--------------- 75 (324)
T 3u61_B 11 EKEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNAD--------------- 75 (324)
T ss_dssp TTCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEE---------------
T ss_pred cccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCC---------------
Confidence 44679999999999999999999999999999999999999999999999999999999998643
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHH-HhhCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDN-MVTSRPPSQYRIFVFDDCDTLS-PDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~-a~~~P~~a~~kVVIIDEID~Ls-~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
++++++. ..+.+.+++.+.. +...++.+.++||||||+|.++ .+.++.|++++++++.+++||++||.
T Consensus 76 ---------~~~i~~~-~~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 76 ---------MMFVNGS-DCKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp ---------EEEEETT-TCCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred ---------EEEEccc-ccCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 4455442 2447777776665 4456667789999999999999 99999999999999899999999999
Q ss_pred CCcchHHHHccceEEEecCCChhH-------HHHHHHHHHHHcCCCCCH-HHHHHHHHhcCCCHHHHHHHHHHHHHhCCC
Q 036794 564 LDALPHIIISRCQKFFFPKMKDAD-------IIYTLQWIASKEGIEIDK-DALKLIASRSDGSLRDAEMTLEQLSLLGQR 635 (1152)
Q Consensus 564 ~dkL~~aL~SR~qvI~F~~p~~~E-------I~eiL~~iakkeGl~Id~-dALelLAe~s~GDLR~Ain~LEkLsLlg~~ 635 (1152)
+.+++++|.+||.++.|++|+.++ +..++..++..+++.+++ ++++.|+..++||+|.+++.|++++ ..+.
T Consensus 146 ~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-~~~~ 224 (324)
T 3u61_B 146 IDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-SKGV 224 (324)
T ss_dssp GGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG-GGTC
T ss_pred ccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh-ccCC
Confidence 999999999999999999999776 456677778889999998 9999999999999999999999998 5667
Q ss_pred CCHHHHHHHHhccchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHh
Q 036794 636 ISVPLVQELVGLISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRR 715 (1152)
Q Consensus 636 IT~EdV~elVg~v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r 715 (1152)
||.++|.+++.. .+.++++++++..++...++..+.+++. +|..|+..|+.++..
T Consensus 225 i~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~~~~~-------------------- 279 (324)
T 3u61_B 225 LDAGILSLVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAEEIYS-------------------- 279 (324)
T ss_dssp BCC--------------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHHHHHH--------------------
T ss_pred CCHHHHHHHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHHHHHH--------------------
Confidence 999999998766 6789999999999999999999999988 898888877654431
Q ss_pred CCCCcccHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcCC
Q 036794 716 QPLSKEEMEKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 716 ~~ls~~s~~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa~ 759 (1152)
.++.+.+.+++..|.++|.+||.+.++.+.||.++++++.
T Consensus 280 ----~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 280 ----RVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLAC 319 (324)
T ss_dssp ----HSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ----hCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 3567889999999999999999999999999999999974
|
| >1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-35 Score=327.44 Aligned_cols=303 Identities=16% Similarity=0.175 Sum_probs=263.4
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHH
Q 036794 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511 (1152)
Q Consensus 432 ~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIre 511 (1152)
.|.+.++ ++.+++||||||+|+||+++++.|++.+.|.... + ..+++++. . .++++
T Consensus 8 ~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~---~---------------~~~~~~~~--~---~~~~~ 63 (343)
T 1jr3_D 8 QLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE---E---------------HHTFSIDP--N---TDWNA 63 (343)
T ss_dssp THHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC---E---------------EEEEECCT--T---CCHHH
T ss_pred HHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC---e---------------eEEEEecC--C---CCHHH
Confidence 4566677 6899999999999999999999999998865210 0 01334442 2 34566
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCC------CcchHHHHccceEEEecCCC
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSL------DALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~------dkL~~aL~SR~qvI~F~~p~ 584 (1152)
+++.+...|++++++||||||+|. ++.+++++|+++|++|+.+++||++++++ .++.++|.+||+++.|.+++
T Consensus 64 l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~ 143 (343)
T 1jr3_D 64 IFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPE 143 (343)
T ss_dssp HHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCC
T ss_pred HHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCC
Confidence 777777778889999999999999 99999999999999999999999999874 46899999999999999999
Q ss_pred hhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh--CCCCCHHHHHHHHhccchhhHHHHHHHHHc
Q 036794 585 DADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL--GQRISVPLVQELVGLISDEKLVDLLDLALS 662 (1152)
Q Consensus 585 ~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl--g~~IT~EdV~elVg~v~ee~ifdLldAils 662 (1152)
..++..||..+++++|+.++++++++|++.++||++.+.++|++++++ ++.||.++|.++++...++++|++++++..
T Consensus 144 ~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l~~ai~~ 223 (343)
T 1jr3_D 144 QAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHWVDALLM 223 (343)
T ss_dssp TTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHHHHHHHC
Confidence 999999999999999999999999999999999999999999999887 456999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCCCcccHHHHHHHH
Q 036794 663 ADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPLSKEEMEKLRQAL 730 (1152)
Q Consensus 663 ~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~ls~~s~~kL~qaL 730 (1152)
+|...|+..++.|+..|++|..|++.|.++||+|+.++.....+ .....++ .+++.+|+.+.|.+++
T Consensus 224 ~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g-~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~L~~~l 302 (343)
T 1jr3_D 224 GKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHT-PLRALFDKHRVWQNRRGMMGEALNRLSQTQLRQAV 302 (343)
T ss_dssp SCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSS-CHHHHHHHHTCCSSHHHHHHHHHHHSCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCC-CHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHH
Confidence 99999999999999999999999999999999999988754444 2222111 2235689999999999
Q ss_pred HHHHHHHHHhccC--CCHHHHHHHHHHHcCC
Q 036794 731 KTLSEAEKQLRMS--NDKLTWLTAALLQLAP 759 (1152)
Q Consensus 731 ~~L~eaD~qLK~s--~dprl~LE~lLLkLa~ 759 (1152)
..|.++|.++|++ .++++.||.+++++|.
T Consensus 303 ~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~ 333 (343)
T 1jr3_D 303 QLLTRTELTLKQDYGQSVWAELEGLSLLLCH 333 (343)
T ss_dssp HHHHHHHHHHHHSSCSCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHHHHcC
Confidence 9999999999995 4899999999999996
|
| >1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-35 Score=331.46 Aligned_cols=308 Identities=16% Similarity=0.190 Sum_probs=253.4
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV--- 501 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa--- 501 (1152)
-++++++.|.+++..++.+|+|||+||+|||||++|+++|+.++|.......||+.|..|..+..+.++++.++++.
T Consensus 6 w~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~ 85 (334)
T 1a5t_A 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (334)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred chHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC
Confidence 36788899999999999999999999999999999999999999987655689999999999999999999999875
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEec
Q 036794 502 GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581 (1152)
Q Consensus 502 s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~ 581 (1152)
...++++++++++.+...|+.++++||||||+|.|+.+++++|+++||+|+.+++||++|+++++++++|+|||+.+.|+
T Consensus 86 ~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc~~~~~~ 165 (334)
T 1a5t_A 86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (334)
T ss_dssp SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred CCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcceeeeCC
Confidence 45789999999999998998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchhhHHHHHHHHH
Q 036794 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLISDEKLVDLLDLAL 661 (1152)
Q Consensus 582 ~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v~ee~ifdLldAil 661 (1152)
+++.+++.+||..++ .+++++++.++..++|++|.+++++++.......++.+.+..++.
T Consensus 166 ~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~~~~~~~~~~~~~~~--------------- 225 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQARETLCQALAYSVP--------------- 225 (334)
T ss_dssp CCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHHHHHHHHHHHHHHHH---------------
T ss_pred CCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHHHHHHHHHHHHHHHh---------------
Confidence 999999999998764 689999999999999999999999988653221222233333222
Q ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchh---HHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Q 036794 662 SADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRH---RRKFFRRQPLSKEEMEKLRQALKTLSEAEK 738 (1152)
Q Consensus 662 s~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~---~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~ 738 (1152)
..+.. ..+..+ .+.++..++..|..+|++++..+... .+.. ....+.. .+.+++.+.|.++++.+.+++.
T Consensus 226 ~~~~~---~~~~~l--~~~~~~~~l~~l~~~~rdll~~~~~~-~~~~~~~~~~~~~~-~a~~~~~~~l~~~~~~l~~~~~ 298 (334)
T 1a5t_A 226 SGDWY---SLLAAL--NHEQAPARLHWLATLLMDALKRHHGA-AQVTNVDVPGLVAE-LANHLSPSRLQAILGDVCHIRE 298 (334)
T ss_dssp HCCCG---GGHHHH--CSTTHHHHHHHHHHHHHHHTCC-------CCCTTCHHHHHH-HHHHSCHHHHHHHHHHHHHHHH
T ss_pred ChHHH---HHHHHH--hcccHHHHHHHHHHHHHHHHHhccCC-ccccCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHH
Confidence 12211 122222 14688899999999999999876421 1110 0111111 2347899999999999999999
Q ss_pred Hhc--cCCCHHHHHHHHHHHcCC
Q 036794 739 QLR--MSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 739 qLK--~s~dprl~LE~lLLkLa~ 759 (1152)
++| .+.++++.||.++++++.
T Consensus 299 ~l~~~~~~n~~l~le~ll~~l~~ 321 (334)
T 1a5t_A 299 QLMSVTGINRELLITDLLLRIEH 321 (334)
T ss_dssp HHHHHCCSSHHHHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHH
Confidence 999 788999999999999984
|
| >2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=290.20 Aligned_cols=276 Identities=15% Similarity=0.152 Sum_probs=225.8
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCC-C
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-N 503 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas-~ 503 (1152)
||+++++.|.+.++.++ .++||||||+|+|||++|+++++... .|. ..++++.++++.+ .
T Consensus 1 g~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~-----------~~~-------~~~~d~~~l~~~~~~ 61 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVE-----------KFP-------PKASDVLEIDPEGEN 61 (305)
T ss_dssp ---CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHH-----------TSC-------CCTTTEEEECCSSSC
T ss_pred ChHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCc-----------hhh-------ccCCCEEEEcCCcCC
Confidence 78999999999999999 88999999999999999999998521 111 1456788888765 6
Q ss_pred CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCC
Q 036794 504 FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 504 ~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p 583 (1152)
.++++++++++.+...|+.++++||||||+|.|+.+++|+|+++||+|+.+++||++|+++.+++++|+|| ++.|+++
T Consensus 62 ~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~~f~~l 139 (305)
T 2gno_A 62 IGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VFRVVVN 139 (305)
T ss_dssp BCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SEEEECC
T ss_pred CCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eEeCCCC
Confidence 88999999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred ChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH-----------HHhCCCCCHHHHHHHHhccchh-
Q 036794 584 KDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL-----------SLLGQRISVPLVQELVGLISDE- 651 (1152)
Q Consensus 584 ~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL-----------sLlg~~IT~EdV~elVg~v~ee- 651 (1152)
+.+++..||..++ .++++++ ..+.||+|.+++.++.. ..++ +.++|.++++...++
T Consensus 140 ~~~~i~~~L~~~~-----~i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~---~~~~v~~~~~~~~~~~ 207 (305)
T 2gno_A 140 VPKEFRDLVKEKI-----GDLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLE---TEKLLKKVLSKGLEGY 207 (305)
T ss_dssp CCHHHHHHHHHHH-----TTHHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSC---HHHHTTTTTCSHHHHH
T ss_pred CHHHHHHHHHHHh-----CCCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcc---cHHHHHHHHccCCcch
Confidence 9999999999887 3777776 34689999998887532 1222 467888888877755
Q ss_pred -hHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCccc-HHHHH
Q 036794 652 -KLVDLLDLALSADTVNTVKNLRVIME--TGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEE-MEKLR 727 (1152)
Q Consensus 652 -~ifdLldAils~d~~~ALk~L~~LL~--~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s-~~kL~ 727 (1152)
++|++++++..+|...|+..+++|+. .|++| +..|.+++|.++... .+. .+.|+
T Consensus 208 ~~v~~l~~ai~~~~~~~a~~~~~~l~~~~~g~~~---~~~i~~~~r~l~~~~-------------------~~~~~~~l~ 265 (305)
T 2gno_A 208 LACRELLERFSKVESKEFFALFDQVTNTITGKDA---FLLIQRLTRIILHEN-------------------TWESVEDQK 265 (305)
T ss_dssp HHHHHHHHHHHHSCGGGHHHHHHHHHHHSCTHHH---HHHHHHHHHHHHHTS-------------------CCCSHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhhc-------------------hhhhHHHHH
Confidence 89999999999999999999999999 78888 455556666655211 222 33333
Q ss_pred HHHHHHHHHHHHhcc---CCCHHHHHHHHHHHcCC
Q 036794 728 QALKTLSEAEKQLRM---SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~---s~dprl~LE~lLLkLa~ 759 (1152)
.+..+|..+.. +.++.+.|+.++..+|.
T Consensus 266 ----~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~ 296 (305)
T 2gno_A 266 ----SVSFLDSILRVKIANLNNKLTLMNILAIHRE 296 (305)
T ss_dssp ----HHHHHHHHHTCCGGGCCHHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 55555555544 88999999999999983
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.5e-29 Score=290.44 Aligned_cols=257 Identities=19% Similarity=0.307 Sum_probs=213.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHH---HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVA---QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~---q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.++|.++|||.+|++++||++++ ..|..++..++. +.+||+||||||||++|++|++.+++.
T Consensus 13 ~~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~-~~vLL~GppGtGKTtlAr~ia~~~~~~-------------- 77 (447)
T 3pvs_A 13 FQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVIARYANAD-------------- 77 (447)
T ss_dssp -CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCC-CEEEEECSTTSSHHHHHHHHHHHTTCE--------------
T ss_pred cCChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCC-cEEEEECCCCCcHHHHHHHHHHHhCCC--------------
Confidence 36999999999999999999999 899999999988 569999999999999999999998654
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+..+.. ...+...++++++.+...+..+.+.||||||+|.++...++.|+.+|++ ..++||++|+..
T Consensus 78 ----------f~~l~a-~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~att~n 144 (447)
T 3pvs_A 78 ----------VERISA-VTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTEN 144 (447)
T ss_dssp ----------EEEEET-TTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEEESSC
T ss_pred ----------eEEEEe-ccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEecCCCC
Confidence 223322 2345777888888766555567789999999999999999999999998 568888888543
Q ss_pred --CcchHHHHccceEEEecCCChhHHHHHHHHHHHH-------cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC-
Q 036794 565 --DALPHIIISRCQKFFFPKMKDADIIYTLQWIASK-------EGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ- 634 (1152)
Q Consensus 565 --dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk-------eGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~- 634 (1152)
..+.++|.+||.++.|.+++.+++..+|..++.. .++.+++++++.|+.+++||+|.++|.|++++.+..
T Consensus 145 ~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~~a~~ 224 (447)
T 3pvs_A 145 PSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEV 224 (447)
T ss_dssp GGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCB
T ss_pred cccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhccc
Confidence 3688999999999999999999999999999987 567799999999999999999999999999987743
Q ss_pred ------CCCHHHHHHHHhccc------h----hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Q 036794 635 ------RISVPLVQELVGLIS------D----EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATV 692 (1152)
Q Consensus 635 ------~IT~EdV~elVg~v~------e----e~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~q 692 (1152)
.||.++|.+++.... . +.+..+++++...|.+.|+.+|.+|+..|++|..|+..|...
T Consensus 225 ~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~ 298 (447)
T 3pvs_A 225 DDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAI 298 (447)
T ss_dssp CTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 499999999998753 1 345555666667999999999999999999999988877664
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.4e-28 Score=252.61 Aligned_cols=241 Identities=32% Similarity=0.574 Sum_probs=215.0
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..+.+|.++|+|..|++++|++.+++.|..++..++.++.+||+||+|+|||++|+.+++.+.+.......+|+.|..|.
T Consensus 8 ~~~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (250)
T 1njg_A 8 MSYQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCR 87 (250)
T ss_dssp ---CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHH
T ss_pred hHHHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 34678999999999999999999999999999999888899999999999999999999999887766668899999988
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+......+++.++.......+.+..+++.+...+..+++.+|||||+|.+....++.|++++++++.+++||++|+...
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 88 EIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp HHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred HHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 88777777777776655556677888887776666667789999999999999999999999999888999999999998
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-CCCCHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-QRISVPLVQEL 644 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-~~IT~EdV~el 644 (1152)
.+.+++.+|+..+.|++++.+++.+++..++...++.+++++++.|+++++|++|.+.+++++++.++ +.||.++|.++
T Consensus 168 ~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~v~~~ 247 (250)
T 1njg_A 168 KLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAM 247 (250)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHHHHHH
T ss_pred hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999987764 46999999988
Q ss_pred Hh
Q 036794 645 VG 646 (1152)
Q Consensus 645 Vg 646 (1152)
++
T Consensus 248 ~~ 249 (250)
T 1njg_A 248 LG 249 (250)
T ss_dssp SC
T ss_pred hC
Confidence 75
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.2e-25 Score=230.47 Aligned_cols=220 Identities=25% Similarity=0.415 Sum_probs=189.0
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|++++|++.+++.|..++..+..++ +||+||+|||||++|+.+++.+.+...
T Consensus 4 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~~--------------- 67 (226)
T 2chg_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENW--------------- 67 (226)
T ss_dssp CCCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGG---------------
T ss_pred hhhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHhcccc---------------
Confidence 4689999999999999999999999999999887666 899999999999999999999865421
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC-C-CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR-P-PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P-~-~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++.++.....+.+.+...+....... . .+.+.+|||||++.+....++.|++++++++.+++||++|+.+.
T Consensus 68 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 68 ----RDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp ----GGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred ----ccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 11134444434445566666665543321 2 25678999999999999999999999999889999999999998
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELV 645 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elV 645 (1152)
.+.+++.+|+..+.|++++.+++..++..++...++.+++++++.|+..++||+|.+.+.|++++.+++.||.++|.+++
T Consensus 144 ~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~~~I~~~~v~~~~ 223 (226)
T 2chg_A 144 RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIGEVVDADTIYQIT 223 (226)
T ss_dssp GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCBCHHHHHHHH
T ss_pred hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcCceecHHHHHHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999888889999999988
Q ss_pred hc
Q 036794 646 GL 647 (1152)
Q Consensus 646 g~ 647 (1152)
+.
T Consensus 224 ~~ 225 (226)
T 2chg_A 224 AT 225 (226)
T ss_dssp HT
T ss_pred cC
Confidence 63
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.90 E-value=1.8e-23 Score=248.45 Aligned_cols=234 Identities=18% Similarity=0.247 Sum_probs=178.9
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC----------------CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR----------------KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g----------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
...++|++||+|.+|++|+|++.+++.|.+++... ...+++||+||||||||++|+++|+++++
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 34579999999999999999999999999998762 14468999999999999999999999865
Q ss_pred cCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh--------------hCCCCCCceEEEEeCCCC
Q 036794 470 QSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV--------------TSRPPSQYRIFVFDDCDT 535 (1152)
Q Consensus 470 ~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~--------------~~P~~a~~kVVIIDEID~ 535 (1152)
. +++++.........+...+..+. .......+.||||||+|.
T Consensus 104 ~------------------------~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~ 159 (516)
T 1sxj_A 104 D------------------------ILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDG 159 (516)
T ss_dssp E------------------------EEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGG
T ss_pred C------------------------EEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCc
Confidence 4 23333222222222221111110 001225678999999999
Q ss_pred CCHHH---HHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036794 536 LSPDS---WSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA 612 (1152)
Q Consensus 536 Ls~ea---qnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLA 612 (1152)
+.... .+.|++++++....+++|..+.....++ ++.+||..+.|++|+.+++.++|..++..+++.+++++++.|+
T Consensus 160 l~~~~~~~l~~L~~~l~~~~~~iIli~~~~~~~~l~-~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la 238 (516)
T 1sxj_A 160 MSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMR-PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLI 238 (516)
T ss_dssp CCTTSTTHHHHHHHHHHHCSSCEEEEESCTTSSTTG-GGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHH
T ss_pred cchhhHHHHHHHHHHHHhcCCCEEEEEcCCCCccch-hhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 97654 4889999988544444433333334444 5899999999999999999999999999999999999999999
Q ss_pred HhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhcc---chhhHHHHHHHHHcCC
Q 036794 613 SRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVGLI---SDEKLVDLLDLALSAD 664 (1152)
Q Consensus 613 e~s~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~v---~ee~ifdLldAils~d 664 (1152)
+.++||+|.+++.|+.++...+.|+.++|.+++... ....+|++++.++.++
T Consensus 239 ~~s~GdiR~~i~~L~~~~~~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~ 293 (516)
T 1sxj_A 239 QTTRGDIRQVINLLSTISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQ 293 (516)
T ss_dssp HHTTTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGG
T ss_pred HHcCCcHHHHHHHHHHHHhcCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCC
Confidence 999999999999999998878889999999888743 3457899999888754
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.7e-22 Score=225.09 Aligned_cols=212 Identities=20% Similarity=0.210 Sum_probs=167.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
.....|.++|+|.+|++|+|++.+++.|..++.. +.....+||+||+|||||++|+++++.+++.+.
T Consensus 14 ~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~--------- 84 (338)
T 3pfi_A 14 SFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIK--------- 84 (338)
T ss_dssp ---------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEE---------
T ss_pred chhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeE---------
Confidence 3355899999999999999999999999988876 344556999999999999999999999765421
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC---------
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--------- 552 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--------- 552 (1152)
.++.........+..++.. .+.+.+|||||++.++...++.|+++|++..
T Consensus 85 ---------------~~~~~~~~~~~~~~~~~~~------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~ 143 (338)
T 3pfi_A 85 ---------------TTAAPMIEKSGDLAAILTN------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGP 143 (338)
T ss_dssp ---------------EEEGGGCCSHHHHHHHHHT------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC--------
T ss_pred ---------------EecchhccchhHHHHHHHh------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCc
Confidence 1111111233445545443 2567899999999999999999999999742
Q ss_pred ---------CCEEEEEEcCCCCcchHHHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 ---------RRVVFILVSSSLDALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ---------~~VifILaTN~~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
++++||++||....+.++|++|+ ..+.|++|+.+++..++...+...++.+++++++.|+..|+||+|.+
T Consensus 144 ~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l 223 (338)
T 3pfi_A 144 AAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPRIA 223 (338)
T ss_dssp -CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHHHH
T ss_pred cccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHH
Confidence 13789999999999999999999 68999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
.+.++.+..+ ...|+.+++..++..
T Consensus 224 ~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 224 LRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 9999997433 335899988877643
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=99.88 E-value=8.6e-22 Score=221.43 Aligned_cols=238 Identities=18% Similarity=0.209 Sum_probs=171.0
Q ss_pred ccchhhhhCCCC-cCcccCcHHHHHH---HHHHHHhCCCC-cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 408 HQNLTQKYMPRT-FRDLVGQNLVAQA---LSNAVMRRKVG-LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 408 ~~~l~eKyRP~s-FddLVGQe~v~q~---Lk~aL~~gri~-~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
...+.++|+|.. |++|+|++.++.. +...+..+..+ +++||+||||||||++|+++++.+.+........|..
T Consensus 30 ~l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~-- 107 (368)
T 3uk6_A 30 GLGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE-- 107 (368)
T ss_dssp SCCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG--
T ss_pred ccCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh--
Confidence 345678899998 9999999988766 45666666654 6899999999999999999999998642211111111
Q ss_pred ccccccCCC-----------------------------------ccceEEe-CCCCCCCHHHHHHHHHHHhhC-CCCC--
Q 036794 483 SCISHDRGK-----------------------------------SRNIKEV-GPVGNFDFESILDLLDNMVTS-RPPS-- 523 (1152)
Q Consensus 483 ~c~~i~~g~-----------------------------------~~dviEI-daas~~~vdeIreLle~a~~~-P~~a-- 523 (1152)
+.....+. ..++..+ ..........++..+..+... ...+
T Consensus 108 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~ 186 (368)
T 3uk6_A 108 -IFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKA 186 (368)
T ss_dssp -GSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC-
T ss_pred -hhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccc
Confidence 00000000 0000000 000011134566665554321 1111
Q ss_pred --CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc-----------CCCCcchHHHHccceEEEecCCChhHHHH
Q 036794 524 --QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS-----------SSLDALPHIIISRCQKFFFPKMKDADIIY 590 (1152)
Q Consensus 524 --~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT-----------N~~dkL~~aL~SR~qvI~F~~p~~~EI~e 590 (1152)
.++||||||+|.|..+.++.|++++++++..++++.+. +.+..++++|++||..+.|++|+.+++..
T Consensus 187 ~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~~~ 266 (368)
T 3uk6_A 187 EIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQ 266 (368)
T ss_dssp --CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHHHH
T ss_pred cccCceEEEhhccccChHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHHHH
Confidence 13699999999999999999999999987776544443 12557889999999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHhcC-CCHHHHHHHHHHHHHh----C-CCCCHHHHHHHHhcc
Q 036794 591 TLQWIASKEGIEIDKDALKLIASRSD-GSLRDAEMTLEQLSLL----G-QRISVPLVQELVGLI 648 (1152)
Q Consensus 591 iL~~iakkeGl~Id~dALelLAe~s~-GDLR~Ain~LEkLsLl----g-~~IT~EdV~elVg~v 648 (1152)
+|..++...++.+++++++.|+.++. ||+|.+.++|+.+..+ + ..||.++|.+++...
T Consensus 267 il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~~ 330 (368)
T 3uk6_A 267 ILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLF 330 (368)
T ss_dssp HHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999988 9999999999998654 2 369999999998763
|
| >1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=2.6e-21 Score=213.44 Aligned_cols=208 Identities=18% Similarity=0.207 Sum_probs=166.4
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+.++|+|.+|++++|++.+++.|..++.. +..+..+||+||+|||||++|+++++.+++..
T Consensus 2 ~~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~--------------- 66 (324)
T 1hqc_A 2 EDLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL--------------- 66 (324)
T ss_dssp ---CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCE---------------
T ss_pred CccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCE---------------
Confidence 35689999999999999999988887764 34556799999999999999999999986542
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--------------
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-------------- 552 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-------------- 552 (1152)
..++........++...+.. ..+.+.+|||||++.++...++.|++++++..
T Consensus 67 ---------~~~~~~~~~~~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~ 132 (324)
T 1hqc_A 67 ---------RVTSGPAIEKPGDLAAILAN-----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTI 132 (324)
T ss_dssp ---------EEECTTTCCSHHHHHHHHTT-----TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCE
T ss_pred ---------EEEeccccCChHHHHHHHHH-----hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccccccc
Confidence 11111111122333333322 12566899999999999999999999999742
Q ss_pred ----CCEEEEEEcCCCCcchHHHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 553 ----RRVVFILVSSSLDALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 553 ----~~VifILaTN~~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
.+++||++||....+.++|.+|+ .++.|++|+.+++..++...+...++.+++++++.|+.+++|++|.+.+.++
T Consensus 133 ~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~~~l~ 212 (324)
T 1hqc_A 133 RLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFR 212 (324)
T ss_dssp EEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred ccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHHHHHH
Confidence 35789999999988989999999 5899999999999999999999999999999999999999999999999999
Q ss_pred HHHHhC-----CCCCHHHHHHHHhc
Q 036794 628 QLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 628 kLsLlg-----~~IT~EdV~elVg~ 647 (1152)
.+..++ ..|+.+++.+++..
T Consensus 213 ~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 213 RVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp HHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 986543 35999998887653
|
| >2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=6.1e-21 Score=223.41 Aligned_cols=124 Identities=19% Similarity=0.287 Sum_probs=112.3
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc---------CC----CCcchHHHHccceEEEecCCChhHHHHHH
Q 036794 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS---------SS----LDALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 526 kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT---------N~----~dkL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
+|+||||+|+|+.+++++|+++||+++.+ +||++| ++ ++.++++|++||+.+.|++++.+++.++|
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999888 688787 44 67899999999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHhc-CCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhccch
Q 036794 593 QWIASKEGIEIDKDALKLIASRS-DGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGLISD 650 (1152)
Q Consensus 593 ~~iakkeGl~Id~dALelLAe~s-~GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~v~e 650 (1152)
+.++..+++.++++++.+|+..+ .|++|.++++|+++..+ ...|+.++|.++++...+
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~d 439 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFYD 439 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSCC
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhcC
Confidence 99999999999999999999998 99999999999997433 246999999999877643
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-19 Score=201.74 Aligned_cols=213 Identities=19% Similarity=0.209 Sum_probs=165.2
Q ss_pred ccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 406 GRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 406 ~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
..|++|+++|+|++|++++|++.++..|..++..+ ..+..++|+||+|+||||+|++|+..+++....
T Consensus 10 ~~~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~-------- 81 (334)
T 1in4_A 10 TVYDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHV-------- 81 (334)
T ss_dssp -------CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEE--------
T ss_pred HHHHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE--------
Confidence 45788999999999999999999999998887653 444569999999999999999999999764211
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC---------
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--------- 552 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--------- 552 (1152)
..........++..++... ..+.|+||||++.+....++.|+..++...
T Consensus 82 ----------------~sg~~~~~~~~l~~~~~~~------~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~ 139 (334)
T 1in4_A 82 ----------------TSGPVLVKQGDMAAILTSL------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGP 139 (334)
T ss_dssp ----------------EETTTCCSHHHHHHHHHHC------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC------
T ss_pred ----------------EechHhcCHHHHHHHHHHc------cCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCc
Confidence 0000111223444444332 345799999999999888888888776532
Q ss_pred ---------CCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHH
Q 036794 553 ---------RRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 553 ---------~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~A 622 (1152)
..+.||.+++.+..+.+.+++||. .+.|.+++.+++.++|+..++..++.++++++..|+.++.|++|.+
T Consensus 140 ~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~R~a 219 (334)
T 1in4_A 140 SAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIA 219 (334)
T ss_dssp ---------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHH
T ss_pred ccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCChHHH
Confidence 236778889999999999999997 5889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
.+.|+++..+ .+.||.+++.+++...
T Consensus 220 ~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 220 IRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp HHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 9999987433 2469999999988754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-19 Score=186.33 Aligned_cols=209 Identities=19% Similarity=0.235 Sum_probs=156.8
Q ss_pred ccchhhhhCC-CCcCcccC---cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 408 HQNLTQKYMP-RTFRDLVG---QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 408 ~~~l~eKyRP-~sFddLVG---Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
..+|..+|+| .+|++++| ++.++..|..++..+ ....+||+||+|||||++|+++++.+......
T Consensus 14 q~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~---------- 82 (242)
T 3bos_A 14 QLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELERR---------- 82 (242)
T ss_dssp CCEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCC----------
T ss_pred hcCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCe----------
Confidence 3467788888 79999997 357888888888765 45579999999999999999999998754211
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH--HHHHHHHHhhCC--CCEEEEE
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS--WSAISKVVDRAP--RRVVFIL 559 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea--qnaLLklLEepp--~~VifIL 559 (1152)
+..++..... +.+.+.+. ....+.+|||||++.+.... ++.|+.+++... ..+.+|+
T Consensus 83 -----------~~~~~~~~~~--~~~~~~~~------~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~ 143 (242)
T 3bos_A 83 -----------SFYIPLGIHA--SISTALLE------GLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIV 143 (242)
T ss_dssp -----------EEEEEGGGGG--GSCGGGGT------TGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSCEEEE
T ss_pred -----------EEEEEHHHHH--HHHHHHHH------hccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCCeEEE
Confidence 1111100000 00001111 11345799999999997765 788888877632 2334666
Q ss_pred EcCCCC----cchHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 560 VSSSLD----ALPHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 560 aTN~~d----kL~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
+++... .+.+.+.+|+ ..+.|++++.+++.+++..++...++.+++++++.|+.+++||+|.+.+.|+++..+
T Consensus 144 ~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~ 223 (242)
T 3bos_A 144 SASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDRLDKA 223 (242)
T ss_dssp EESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred EcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 666432 4558899999 899999999999999999999999999999999999999999999999999998655
Q ss_pred ----CCCCCHHHHHHHHh
Q 036794 633 ----GQRISVPLVQELVG 646 (1152)
Q Consensus 633 ----g~~IT~EdV~elVg 646 (1152)
+..||.++|.+++.
T Consensus 224 a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 224 SMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHTCCCCHHHHHHHHT
T ss_pred HHHhCCCCcHHHHHHHhh
Confidence 45699999998874
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.80 E-value=3.3e-18 Score=187.22 Aligned_cols=219 Identities=21% Similarity=0.235 Sum_probs=161.8
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP 477 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep 477 (1152)
..|.++|+|.+|++|+|++.+++.|..++.. +..+.++||+||||||||++|+++|+.+++.....
T Consensus 9 ~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i--- 85 (297)
T 3b9p_A 9 DEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNI--- 85 (297)
T ss_dssp TTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEE---
T ss_pred HHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe---
Confidence 3567788999999999999999999988754 23457899999999999999999999986542111
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLk 546 (1152)
.|..+... ........++.++..+.. ..+.||||||+|.+. ...++.|+.
T Consensus 86 -----~~~~l~~~----------~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 146 (297)
T 3b9p_A 86 -----SAASLTSK----------YVGDGEKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLV 146 (297)
T ss_dssp -----ESTTTSSS----------SCSCHHHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHH
T ss_pred -----eHHHHhhc----------ccchHHHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCcchHHHHHHHHHHH
Confidence 11111100 001123345555555433 345899999998873 345678888
Q ss_pred HHhhCC-----CCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHH
Q 036794 547 VVDRAP-----RRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLR 620 (1152)
Q Consensus 547 lLEepp-----~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR 620 (1152)
.++..+ ..++||++||.++.+++++.+||. .+.|+.|+.++...++..++...+..+++++++.|+..+.|..+
T Consensus 147 ~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~ 226 (297)
T 3b9p_A 147 EFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSG 226 (297)
T ss_dssp HHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCH
T ss_pred HHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCH
Confidence 888754 468999999999999999999995 68899999999999999999988888999999999999988665
Q ss_pred -HHHHHHHHHHHh-----------------CCCCCHHHHHHHHhccc
Q 036794 621 -DAEMTLEQLSLL-----------------GQRISVPLVQELVGLIS 649 (1152)
Q Consensus 621 -~Ain~LEkLsLl-----------------g~~IT~EdV~elVg~v~ 649 (1152)
++.++++.++.. ...|+.+|+.+++..+.
T Consensus 227 ~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 227 SDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 555666654322 12478888877776543
|
| >3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.80 E-value=1e-18 Score=200.06 Aligned_cols=201 Identities=20% Similarity=0.238 Sum_probs=150.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
....|.++|+|.+|++|+|++.+++.|..++.. +..+.++||+||+|||||++|++||+.+++.....
T Consensus 101 ~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v- 179 (389)
T 3vfd_A 101 IMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNI- 179 (389)
T ss_dssp GGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEE-
T ss_pred HHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEe-
Confidence 345788899999999999999999999988743 23456899999999999999999999977543211
Q ss_pred CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC-----------CHHHHHHH
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL-----------SPDSWSAI 544 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L-----------s~eaqnaL 544 (1152)
.|..+.. . .+ ......+..++..+... ...||||||+|.| ....++.|
T Consensus 180 -------~~~~l~~-----~-~~----g~~~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~~~~~~~~~~~~l 238 (389)
T 3vfd_A 180 -------SAASLTS-----K-YV----GEGEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHDASRRLKTEF 238 (389)
T ss_dssp -------CSCCC-----------------CHHHHHHHHHHHHHS----SSEEEEEETGGGGC--------CTHHHHHHHH
T ss_pred -------eHHHhhc-----c-cc----chHHHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCccchHHHHHHHHH
Confidence 1111100 0 00 01233456666665432 3479999999988 34456788
Q ss_pred HHHHhh----CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCH
Q 036794 545 SKVVDR----APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSL 619 (1152)
Q Consensus 545 LklLEe----pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDL 619 (1152)
+..++. .+.+++||++||.++.+++++++||. .+.|+.|+.+++..+|..++...+..++++++..|+..+.|..
T Consensus 239 l~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 239 LIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp HHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCC
T ss_pred HHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCC
Confidence 888875 35679999999999999999999996 6999999999999999999999999999999999999999966
Q ss_pred HHHHHH-HHHH
Q 036794 620 RDAEMT-LEQL 629 (1152)
Q Consensus 620 R~Ain~-LEkL 629 (1152)
+..++. +..+
T Consensus 319 ~~~l~~L~~~a 329 (389)
T 3vfd_A 319 GSDLTALAKDA 329 (389)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 644444 4443
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-17 Score=184.37 Aligned_cols=247 Identities=18% Similarity=0.118 Sum_probs=169.8
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCc--EEEEEcCCCchHHHHHHHHHHHHcccC-CCC-CCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGL--LYVFYGPHGTGKTSCARIFARALNCQS-LEQ-PKPCGF 480 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~--~yLL~GPpGTGKTtlARaLAkeL~~~~-~e~-~epcg~ 480 (1152)
..+|..+|+| ++++|++..++.|..++.. +..+. .++|+||+|||||++++.+++.+.+.. ... ...|..
T Consensus 7 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~ 83 (389)
T 1fnn_A 7 DSVFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFI 83 (389)
T ss_dssp GGGGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTT
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCcc
Confidence 4467788987 7899999999999888876 44445 799999999999999999999986541 100 001111
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC----CCEE
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP----RRVV 556 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp----~~Vi 556 (1152)
+.....+.......+....+........+.+.+...... .+.+.||||||++.+....+..|++++++.+ .++.
T Consensus 84 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~~~ 161 (389)
T 1fnn_A 84 YRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRE--RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIA 161 (389)
T ss_dssp CCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHH--TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEE
T ss_pred CCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhh--cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCCEE
Confidence 000000000000000000000112233333333222111 1446799999999999999999999998743 5899
Q ss_pred EEEEcCCC---CcchHHHHccce--EEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHHHHhc---------CCCHH
Q 036794 557 FILVSSSL---DALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLIASRS---------DGSLR 620 (1152)
Q Consensus 557 fILaTN~~---dkL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelLAe~s---------~GDLR 620 (1152)
||++|+.+ ..+.+.+.+|+. .+.|++++.+++.+++...+... ...+++++++.++..+ +||+|
T Consensus 162 iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r 241 (389)
T 1fnn_A 162 LVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDAR 241 (389)
T ss_dssp EEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHH
T ss_pred EEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHH
Confidence 99999987 567788889987 69999999999999999988762 3479999999999998 89999
Q ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHhccchhhHHHHHHH
Q 036794 621 DAEMTLEQLSLL-----GQRISVPLVQELVGLISDEKLVDLLDL 659 (1152)
Q Consensus 621 ~Ain~LEkLsLl-----g~~IT~EdV~elVg~v~ee~ifdLldA 659 (1152)
.+.+.++.+... ...|+.++|.+++.....+.+.+.++.
T Consensus 242 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~~~~~~~~l~~ 285 (389)
T 1fnn_A 242 LAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIG 285 (389)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHhhhhHHHHHHc
Confidence 999999987654 246999999888776555444444443
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.6e-18 Score=190.23 Aligned_cols=234 Identities=19% Similarity=0.216 Sum_probs=159.9
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC--CCCCCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE--QPKPCGFCN 482 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e--~~epcg~c~ 482 (1152)
...|..+|.| ++++|++..++.|..++.. +..+..++|+||+|||||++|+.+++.+...... ...++. ..
T Consensus 9 ~~~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~-~i 84 (387)
T 2v1u_A 9 RWVLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPI-YV 84 (387)
T ss_dssp HHHHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEE-EE
T ss_pred HHhcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEE-EE
Confidence 3456667876 7899999999999988865 3555679999999999999999999988432100 000000 00
Q ss_pred ccccccCCC--ccc-eEEeC---CCCCCCHHHHH-HHHHHHhhCCCCCCceEEEEeCCCCCCHH--HHHHHHHHHhhC--
Q 036794 483 SCISHDRGK--SRN-IKEVG---PVGNFDFESIL-DLLDNMVTSRPPSQYRIFVFDDCDTLSPD--SWSAISKVVDRA-- 551 (1152)
Q Consensus 483 ~c~~i~~g~--~~d-viEId---aas~~~vdeIr-eLle~a~~~P~~a~~kVVIIDEID~Ls~e--aqnaLLklLEep-- 551 (1152)
+|....... ... +..++ +........+. .+.+.+. ..+.+.||||||+|.+... .++.|..+++..
T Consensus 85 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~ 161 (387)
T 2v1u_A 85 NARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQE 161 (387)
T ss_dssp ETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGC
T ss_pred ECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhh
Confidence 111100000 000 00000 00111233322 2333322 1244679999999999776 667777776643
Q ss_pred ---CCCEEEEEEcCCC---CcchHHHHccc--eEEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHhcC---CC
Q 036794 552 ---PRRVVFILVSSSL---DALPHIIISRC--QKFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASRSD---GS 618 (1152)
Q Consensus 552 ---p~~VifILaTN~~---dkL~~aL~SR~--qvI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~s~---GD 618 (1152)
+.+++||++||.+ ..+.+.+.+|+ ..+.|++++.+++..++...+.. .+..+++++++.++.++. ||
T Consensus 162 ~~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~ 241 (387)
T 2v1u_A 162 LGDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGD 241 (387)
T ss_dssp C-----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCC
T ss_pred cCCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccC
Confidence 5688999999987 57888999999 68999999999999999999876 567899999999999987 99
Q ss_pred HHHHHHHHHHHHHhC-----CCCCHHHHHHHHhcc
Q 036794 619 LRDAEMTLEQLSLLG-----QRISVPLVQELVGLI 648 (1152)
Q Consensus 619 LR~Ain~LEkLsLlg-----~~IT~EdV~elVg~v 648 (1152)
+|.+++.++.+...+ ..|+.++|.+++...
T Consensus 242 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 999999999986542 469999999887665
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=193.84 Aligned_cols=199 Identities=17% Similarity=0.184 Sum_probs=152.2
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHH-----------hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVM-----------RRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP 477 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~-----------~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep 477 (1152)
..|..++.+.+|++|+|++.+++.|..++. ....+.++|||||||||||++|+++|+++++.....
T Consensus 6 ~~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v--- 82 (322)
T 3eie_A 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV--- 82 (322)
T ss_dssp CCSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEE---
T ss_pred cceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEE---
Confidence 356677888899999999999999998883 133456899999999999999999999986542111
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLk 546 (1152)
.|..+.. .........++.++..+.. ..+.||||||+|.+.. ..++.|+.
T Consensus 83 -----~~~~l~~----------~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~ 143 (322)
T 3eie_A 83 -----SSSDLVS----------KWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLV 143 (322)
T ss_dssp -----EHHHHHT----------TTGGGHHHHHHHHHHHHHH----TSSEEEEEECGGGGSCC------CCTHHHHHHHHH
T ss_pred -----chHHHhh----------cccchHHHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHH
Confidence 1111100 0001112345666666543 2458999999998854 34678888
Q ss_pred HHhh---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 547 VVDR---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 547 lLEe---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.++. ...+++||++||.++.+++++++||. .+.|+.|+.+++.++++.++...+..++++.+..|+..+.| +.++
T Consensus 144 ~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~d 223 (322)
T 3eie_A 144 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSD 223 (322)
T ss_dssp HHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHH
T ss_pred HhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 8874 45789999999999999999999996 58899999999999999999988888999999999999887 6777
Q ss_pred HHHHHHHH
Q 036794 622 AEMTLEQL 629 (1152)
Q Consensus 622 Ain~LEkL 629 (1152)
+.+++..+
T Consensus 224 i~~l~~~a 231 (322)
T 3eie_A 224 IAVVVKDA 231 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77777655
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2e-18 Score=189.41 Aligned_cols=192 Identities=16% Similarity=0.166 Sum_probs=147.0
Q ss_pred cccCcHHHHHHHHHHHHh--------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 422 DLVGQNLVAQALSNAVMR--------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~--------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
+|+|++.+++.|.+.+.. +.....+||+||||||||++|+++++.+.+.......++.++. |..+
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~-~~~l 110 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVT-RDDL 110 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEEC-GGGT
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEc-HHHh
Confidence 799999999999877653 4555679999999999999999999999765322111211111 1111
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhCCCCEEEE
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDRAPRRVVFI 558 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEepp~~VifI 558 (1152)
. ..........+..++..+ .+.||||||+|.+ ....++.|+++|++.+.+++||
T Consensus 111 ~----------~~~~g~~~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i 173 (309)
T 3syl_A 111 V----------GQYIGHTAPKTKEVLKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVI 173 (309)
T ss_dssp C----------CSSTTCHHHHHHHHHHHH-------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEE
T ss_pred h----------hhcccccHHHHHHHHHhc-------CCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEE
Confidence 0 000011123455555554 2469999999977 7788999999999988899999
Q ss_pred EEcCCCC-----cchHHHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh--------cCCCHHHHHH
Q 036794 559 LVSSSLD-----ALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR--------SDGSLRDAEM 624 (1152)
Q Consensus 559 LaTN~~d-----kL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~--------s~GDLR~Ain 624 (1152)
++|+... .+.++|++|| ..+.|++|+.+++..++..++.+.++.+++++++.++.+ +.||+|.+.+
T Consensus 174 ~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~ 253 (309)
T 3syl_A 174 LAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRN 253 (309)
T ss_dssp EEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHH
T ss_pred EeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHH
Confidence 9997543 2457899999 689999999999999999999999999999999999985 6699999999
Q ss_pred HHHHHHH
Q 036794 625 TLEQLSL 631 (1152)
Q Consensus 625 ~LEkLsL 631 (1152)
.|+.++.
T Consensus 254 ~l~~a~~ 260 (309)
T 3syl_A 254 ALDRARL 260 (309)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999864
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.77 E-value=7.2e-18 Score=181.35 Aligned_cols=213 Identities=17% Similarity=0.185 Sum_probs=156.9
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
|.+++.+.+|++|+|++.+++.|...+.. ...+.++||+||+|||||++|+++++.+++.....
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i----- 76 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI----- 76 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE-----
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE-----
Confidence 67788999999999999999988876543 23466899999999999999999999886432111
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHH
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAIS 545 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLL 545 (1152)
.|..+... ........++.+++.+.. ..+.++||||+|.+.. ...+.|+
T Consensus 77 ---~~~~~~~~----------~~~~~~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll 139 (257)
T 1lv7_A 77 ---SGSDFVEM----------FVGVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQML 139 (257)
T ss_dssp ---CSCSSTTS----------CCCCCHHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHH
T ss_pred ---eHHHHHHH----------hhhhhHHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHH
Confidence 11111000 011234567777777642 2347999999977642 3456677
Q ss_pred HHHhh--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-C
Q 036794 546 KVVDR--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-S 618 (1152)
Q Consensus 546 klLEe--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-D 618 (1152)
..++. ...++++|++||.++.+++++.+ |+. .+.|+.|+.++..++++.+++... +.+++ +..++..+.| +
T Consensus 140 ~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~~~la~~~~G~~ 217 (257)
T 1lv7_A 140 VEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDAAIIARGTPGFS 217 (257)
T ss_dssp HHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCC
T ss_pred HHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccHHHHHHHcCCCC
Confidence 77775 35679999999999989998887 765 588999999999999988876543 44443 6788899999 9
Q ss_pred HHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 619 LRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 619 LR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
.|++.+.++.++.+ ...|+.+++.+++..
T Consensus 218 ~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 218 GADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 99999999997655 246999999888754
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-17 Score=186.47 Aligned_cols=233 Identities=16% Similarity=0.171 Sum_probs=159.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC---CC-CCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSL---EQ-PKPCGF 480 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~---e~-~epcg~ 480 (1152)
...|..+|+| ++++|++..++.|..++.. +..+..++|+||+|||||++|+++++.+..... .. ..++ .
T Consensus 10 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~-~ 85 (384)
T 2qby_B 10 KVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQ-A 85 (384)
T ss_dssp TTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEE-E
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceE-E
Confidence 4577888987 7899999999988877765 555678999999999999999999998743210 00 0000 0
Q ss_pred CCcccccc-CCC------ccceEEeC-CCCCCCHHH-HHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHH-HHHHHh
Q 036794 481 CNSCISHD-RGK------SRNIKEVG-PVGNFDFES-ILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSA-ISKVVD 549 (1152)
Q Consensus 481 c~~c~~i~-~g~------~~dviEId-aas~~~vde-IreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qna-LLklLE 549 (1152)
..+|.... ... ...+.... +........ +..+...+. ....||||||+|.+.... ++. |..+++
T Consensus 86 ~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-----~~~~vlilDEi~~l~~~~~~~~~l~~l~~ 160 (384)
T 2qby_B 86 YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-----NIRAIIYLDEVDTLVKRRGGDIVLYQLLR 160 (384)
T ss_dssp EEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-----SSCEEEEEETTHHHHHSTTSHHHHHHHHT
T ss_pred EEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-----cCCCEEEEECHHHhccCCCCceeHHHHhc
Confidence 01111110 000 00000000 000111222 222332221 122399999999987552 455 555555
Q ss_pred hCCCCEEEEEEcCCC---CcchHHHHccc-eEEEecCCChhHHHHHHHHHHHH--cCCCCCHHHHHHHHHhcC---CCHH
Q 036794 550 RAPRRVVFILVSSSL---DALPHIIISRC-QKFFFPKMKDADIIYTLQWIASK--EGIEIDKDALKLIASRSD---GSLR 620 (1152)
Q Consensus 550 epp~~VifILaTN~~---dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakk--eGl~Id~dALelLAe~s~---GDLR 620 (1152)
.. .++.||++|+.. ..+.+.+.+|+ ..+.|++++.+++.+++..++.. .+..+++++++.++.+++ ||+|
T Consensus 161 ~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r 239 (384)
T 2qby_B 161 SD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDAR 239 (384)
T ss_dssp SS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHH
T ss_pred CC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHH
Confidence 44 789999999987 56888899995 68999999999999999998875 456799999999999987 9999
Q ss_pred HHHHHHHHHHHhC---CCCCHHHHHHHHhccch
Q 036794 621 DAEMTLEQLSLLG---QRISVPLVQELVGLISD 650 (1152)
Q Consensus 621 ~Ain~LEkLsLlg---~~IT~EdV~elVg~v~e 650 (1152)
.+++.|+.+...+ ..|+.++|.+++.....
T Consensus 240 ~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~~~ 272 (384)
T 2qby_B 240 KAVNLLFRAAQLASGGGIIRKEHVDKAIVDYEQ 272 (384)
T ss_dssp HHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhc
Confidence 9999999987664 46999999998876543
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-18 Score=193.25 Aligned_cols=199 Identities=17% Similarity=0.191 Sum_probs=151.2
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPC 478 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epc 478 (1152)
.+.++|+|.+|++|+|++.+++.|.+++.. +..+..+||+||+|||||++|+++|+.+++.....
T Consensus 73 ~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i---- 148 (357)
T 3d8b_A 73 EIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSI---- 148 (357)
T ss_dssp HTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEE----
T ss_pred hcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEE----
Confidence 355678899999999999999999988763 45567899999999999999999999986542111
Q ss_pred CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHH
Q 036794 479 GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKV 547 (1152)
Q Consensus 479 g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLkl 547 (1152)
.|..+... ........++.++..+.. ..+.||||||+|.|.. ..++.|+..
T Consensus 149 ----~~~~l~~~----------~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~ 210 (357)
T 3d8b_A 149 ----SASSLTSK----------WVGEGEKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQ 210 (357)
T ss_dssp ----EGGGGCCS----------STTHHHHHHHHHHHHHHH----TCSEEEEEETHHHHTBC------CHHHHHHHHHHHH
T ss_pred ----ehHHhhcc----------ccchHHHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHH
Confidence 11111100 000112345555555432 3458999999988732 346678888
Q ss_pred Hhh----CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 548 VDR----APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 548 LEe----pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
|+. ...+++||++||.++.+++++++||. .+.|+.|+.+++..++..++...++.+++++++.|+..+.| ..++
T Consensus 211 l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 211 LDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp HHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred HhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHH
Confidence 875 35689999999999999999999997 68999999999999999999998999999999999999988 6666
Q ss_pred HHHHHHHHH
Q 036794 622 AEMTLEQLS 630 (1152)
Q Consensus 622 Ain~LEkLs 630 (1152)
+.++++.+.
T Consensus 291 l~~l~~~a~ 299 (357)
T 3d8b_A 291 MTQLCREAS 299 (357)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666543
|
| >4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.2e-17 Score=192.86 Aligned_cols=208 Identities=18% Similarity=0.225 Sum_probs=152.9
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|+||.|.+.+++.|++++.- -..+.+||||||||||||++|+++|.++++.+....
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~-------- 214 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS-------- 214 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE--------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE--------
Confidence 345899999999999999987753 245568999999999999999999999987632110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLE 549 (1152)
+..+ +......+...+++++..+... .+.||||||+|.+.. ...+.||..|+
T Consensus 215 ~s~l----------~sk~vGese~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lD 280 (405)
T 4b4t_J 215 GAEL----------VQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLD 280 (405)
T ss_dssp GGGG----------SCSSTTHHHHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHH
T ss_pred hHHh----------hccccchHHHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhh
Confidence 0000 0001112245688888887654 347999999999842 13456777777
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~A 622 (1152)
. ...+++||++||.++.|+++|++ |+. .|.|+.|+.+++.++++.+++...+ +++ .++.||..+.| +..++
T Consensus 281 g~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l--~~dvdl~~lA~~t~G~SGADi 358 (405)
T 4b4t_J 281 GFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL--TRGINLRKVAEKMNGCSGADV 358 (405)
T ss_dssp TTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC--CSSCCHHHHHHHCCSCCHHHH
T ss_pred ccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC--CccCCHHHHHHHCCCCCHHHH
Confidence 4 45689999999999999999998 776 6999999999999999988776543 332 37888998877 77777
Q ss_pred HHHHHHHHHh---C--CCCCHHHHHHHHhc
Q 036794 623 EMTLEQLSLL---G--QRISVPLVQELVGL 647 (1152)
Q Consensus 623 in~LEkLsLl---g--~~IT~EdV~elVg~ 647 (1152)
.+++..+++. . ..|+.+|+..++..
T Consensus 359 ~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 359 KGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 7777776544 2 24888888777654
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=3e-18 Score=187.04 Aligned_cols=212 Identities=21% Similarity=0.254 Sum_probs=150.1
Q ss_pred CcccCcHHHHHHHHHHHHh-------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 421 RDLVGQNLVAQALSNAVMR-------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
++++|++.+++.|..++.. +..++.+||+||||||||++|+++++.+++.... ..|..+
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~--------i~~~~~ 86 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK--------VEATKF 86 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEE--------EEGGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEE--------Ecchhc
Confidence 4689999999999988865 3456679999999999999999999998654211 111111
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC-CCCCceEEEEeCCCCCCHHH------------HHHHHHHHhhC---
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR-PPSQYRIFVFDDCDTLSPDS------------WSAISKVVDRA--- 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~P-~~a~~kVVIIDEID~Ls~ea------------qnaLLklLEep--- 551 (1152)
....+ + +......+.+++......- ....+.||||||+|.+.... ++.|+++|++.
T Consensus 87 ~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 158 (310)
T 1ofh_A 87 TEVGY-----V---GKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVS 158 (310)
T ss_dssp SSCCS-----G---GGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEE
T ss_pred ccCCc-----c---CccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEe
Confidence 11000 0 0011123444443210000 00135799999999998664 88999999973
Q ss_pred -------CCCEEEEEEc----CCCCcchHHHHccce-EEEecCCChhHHHHHHHH-----------HHHHcCC--CCCHH
Q 036794 552 -------PRRVVFILVS----SSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQW-----------IASKEGI--EIDKD 606 (1152)
Q Consensus 552 -------p~~VifILaT----N~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~d 606 (1152)
..+++||+++ +.+..++++|.+||. .+.|++|+.+++..+++. .+...+. .++++
T Consensus 159 ~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (310)
T 1ofh_A 159 TKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTD 238 (310)
T ss_dssp ETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHH
T ss_pred cccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHH
Confidence 3578888885 456678999999996 599999999999998872 3334553 68999
Q ss_pred HHHHHHHhc--------CCCHHHHHHHHHHHHH-----h---CC---CCCHHHHHHHHhcc
Q 036794 607 ALKLIASRS--------DGSLRDAEMTLEQLSL-----L---GQ---RISVPLVQELVGLI 648 (1152)
Q Consensus 607 ALelLAe~s--------~GDLR~Ain~LEkLsL-----l---g~---~IT~EdV~elVg~v 648 (1152)
++++|+.++ .||+|.+.+.|+++.. . .+ .||.++|.+++...
T Consensus 239 a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 239 AVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 999999996 7999999999999741 1 11 39999999988754
|
| >2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-17 Score=189.15 Aligned_cols=201 Identities=17% Similarity=0.178 Sum_probs=148.0
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP 477 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep 477 (1152)
..+..++.+.+|++|+|++.+++.|..++.. ...++++|||||||||||++|++||+++++.....
T Consensus 39 ~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v--- 115 (355)
T 2qp9_X 39 SAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSV--- 115 (355)
T ss_dssp --------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEE---
T ss_pred hhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEe---
Confidence 3456678888999999999999999988742 24456799999999999999999999987542111
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLk 546 (1152)
.|..+... ........++.++..+.. ..+.||||||+|.+.. ..++.|+.
T Consensus 116 -----~~~~l~~~----------~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 176 (355)
T 2qp9_X 116 -----SSSDLVSK----------WMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLV 176 (355)
T ss_dssp -----EHHHHHSC----------C---CHHHHHHHHHHHHH----TSSEEEEEECGGGGTC------CTHHHHHHHHHHH
T ss_pred -----eHHHHhhh----------hcchHHHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHH
Confidence 11111100 001123445666665543 3458999999999863 24678888
Q ss_pred HHhh---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 547 VVDR---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 547 lLEe---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.|+. ....++||++||.++.+++++++||. .+.|+.|+.+++..+|+.++...+..+++..++.|+..+.| +.++
T Consensus 177 ~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~d 256 (355)
T 2qp9_X 177 QMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSD 256 (355)
T ss_dssp HHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHH
T ss_pred HhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 8875 35689999999999999999999995 68999999999999999999888888899999999999988 7788
Q ss_pred HHHHHHHHHH
Q 036794 622 AEMTLEQLSL 631 (1152)
Q Consensus 622 Ain~LEkLsL 631 (1152)
+.++++.+++
T Consensus 257 l~~l~~~A~~ 266 (355)
T 2qp9_X 257 IAVVVKDALM 266 (355)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888877654
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.75 E-value=5.8e-17 Score=181.79 Aligned_cols=196 Identities=15% Similarity=0.158 Sum_probs=147.7
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCCCCCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKPCGFC 481 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~epcg~c 481 (1152)
++.+.+|+||+|++.+++.|.+++.. ...++++|||||||||||++|+++|+++. .....
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~-------- 76 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS-------- 76 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEE--------
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEE--------
Confidence 45567899999999999999988752 23446899999999999999999999973 22100
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhh
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDR 550 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEe 550 (1152)
..|..+. ..........++.++..+.. ..+.||||||+|.+.. ...+.|+..++.
T Consensus 77 i~~~~l~----------~~~~g~~~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~ 142 (322)
T 1xwi_A 77 ISSSDLV----------SKWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQG 142 (322)
T ss_dssp EECCSSC----------CSSCCSCHHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHC
T ss_pred EEhHHHH----------hhhhhHHHHHHHHHHHHHHh----cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhc
Confidence 0111110 00011234556777766543 3458999999998822 345678888876
Q ss_pred ---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 551 ---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 ---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
...+++||++||.++.+++++++||. .+.|+.|+.+++..+++.++...+..+++..++.|+..+.| +.+++.++
T Consensus 143 ~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l 222 (322)
T 1xwi_A 143 VGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISII 222 (322)
T ss_dssp SSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHH
T ss_pred ccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 35789999999999999999999995 68999999999999999999888888899999999999888 57777777
Q ss_pred HHHHHH
Q 036794 626 LEQLSL 631 (1152)
Q Consensus 626 LEkLsL 631 (1152)
+..+++
T Consensus 223 ~~~A~~ 228 (322)
T 1xwi_A 223 VRDALM 228 (322)
T ss_dssp HHHHHT
T ss_pred HHHHHH
Confidence 776653
|
| >1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G | Back alignment and structure |
|---|
Probab=99.74 E-value=2e-17 Score=184.15 Aligned_cols=235 Identities=15% Similarity=0.168 Sum_probs=154.4
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccC----CCC----CCCCCCCCccccc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS----LEQ----PKPCGFCNSCISH 487 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~----~e~----~epcg~c~~c~~i 487 (1152)
+|.+|++++|++.++..+..++...... .+||+||||||||++|+++++.+.... ... ..+|..|..|..+
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~-~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIG-GVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLST 97 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGC-CEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCc-eEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhcc
Confidence 5668999999999888776665543333 389999999999999999999886311 011 1233444444422
Q ss_pred cCCCc-cceEEeCCCCCCCHHHH------HHHHHHHhhC--C---CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC----
Q 036794 488 DRGKS-RNIKEVGPVGNFDFESI------LDLLDNMVTS--R---PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---- 551 (1152)
Q Consensus 488 ~~g~~-~dviEIdaas~~~vdeI------reLle~a~~~--P---~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---- 551 (1152)
..... ..++.+.. ......+ ...+...... + ..+.++||||||++.++...++.|+++|++.
T Consensus 98 ~~~~~~~~~~~~~~--~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~ 175 (350)
T 1g8p_A 98 NVIRKPTPVVDLPL--GVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVV 175 (350)
T ss_dssp CEEEECCCEEEECT--TCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEE
T ss_pred ccccCCCcccccCC--CcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEE
Confidence 21110 11222211 1111111 1122211000 0 0123689999999999999999999999973
Q ss_pred ---------CCCEEEEEEcCCCC-cchHHHHccceE-EEecCCChh-HHHHHHHHH------------------------
Q 036794 552 ---------PRRVVFILVSSSLD-ALPHIIISRCQK-FFFPKMKDA-DIIYTLQWI------------------------ 595 (1152)
Q Consensus 552 ---------p~~VifILaTN~~d-kL~~aL~SR~qv-I~F~~p~~~-EI~eiL~~i------------------------ 595 (1152)
+.+++||+++|..+ .+.++|++||.. +.|++|+.. +..+++..+
T Consensus 176 ~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (350)
T 1g8p_A 176 ERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQ 255 (350)
T ss_dssp CCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred EecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHH
Confidence 24788888888644 789999999986 999999544 333454331
Q ss_pred -----HHHcCCCCCHHHHHHHHHhcCC----CHHHHHHHHHHHHHh----C-CCCCHHHHHHHHhccchhhH
Q 036794 596 -----ASKEGIEIDKDALKLIASRSDG----SLRDAEMTLEQLSLL----G-QRISVPLVQELVGLISDEKL 653 (1152)
Q Consensus 596 -----akkeGl~Id~dALelLAe~s~G----DLR~Ain~LEkLsLl----g-~~IT~EdV~elVg~v~ee~i 653 (1152)
....++.++++++++|+.++.+ ++|.+.++|+.+..+ + ..|+.++|.+++..+....+
T Consensus 256 i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~r~ 327 (350)
T 1g8p_A 256 ILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSHRL 327 (350)
T ss_dssp HHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGGGC
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhhcc
Confidence 2234678999999999999655 789999999876433 2 35999999998876554443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=8.6e-17 Score=171.88 Aligned_cols=208 Identities=15% Similarity=0.148 Sum_probs=143.6
Q ss_pred CCcCcccCcHHHHHHHHHHHHhC-----------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRR-----------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~g-----------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|++|+|++.+++.|.+.+..- ..+..+||+||||||||++|+++|+++++..... .|..
T Consensus 3 ~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~--------~~~~ 74 (262)
T 2qz4_A 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAM--------AGAE 74 (262)
T ss_dssp CCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEE--------ETTT
T ss_pred CCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEe--------chHH
Confidence 47999999999999888766431 3456799999999999999999999986542111 1111
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC------------HHH---HHHHHHHHhh-
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS------------PDS---WSAISKVVDR- 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls------------~ea---qnaLLklLEe- 550 (1152)
+. +.........+..++..+... .+.||||||+|.+. ... .+.|+..++.
T Consensus 75 ~~----------~~~~~~~~~~~~~~~~~a~~~----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~ 140 (262)
T 2qz4_A 75 FV----------EVIGGLGAARVRSLFKEARAR----APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM 140 (262)
T ss_dssp TS----------SSSTTHHHHHHHHHHHHHHHT----CSEEEEEECC-------------------CHHHHHHHHHHHTC
T ss_pred HH----------hhccChhHHHHHHHHHHHHhc----CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc
Confidence 10 001112234566666665432 35899999999983 222 3344444544
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCC-CHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDG-SLRDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~G-DLR~Ain 624 (1152)
.+.+++||++||.++.+++++.+ |+. .+.|+.|+.+++.++++.++...++..+.+. +..|+..+.| ..+++.+
T Consensus 141 ~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~ 220 (262)
T 2qz4_A 141 GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIAN 220 (262)
T ss_dssp CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHH
Confidence 34689999999999999999998 885 6899999999999999999999888887764 5788888877 4568888
Q ss_pred HHHHHHHhC-----CCCCHHHHHHHHhc
Q 036794 625 TLEQLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 625 ~LEkLsLlg-----~~IT~EdV~elVg~ 647 (1152)
+++.++..+ ..|+.+++.+++..
T Consensus 221 l~~~a~~~a~~~~~~~i~~~d~~~a~~~ 248 (262)
T 2qz4_A 221 ICNEAALHAAREGHTSVHTLNFEYAVER 248 (262)
T ss_dssp HHHHHHTC--------CCBCCHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 888876542 23666666655543
|
| >4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.74 E-value=3.6e-17 Score=189.68 Aligned_cols=208 Identities=17% Similarity=0.173 Sum_probs=150.7
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
...+|+||.|.+.+++.|.+.+.. -..+.+||||||||||||++|+++|.++++.+....
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~-------- 248 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIV-------- 248 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEE--------
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEE--------
Confidence 345899999999999999987743 245679999999999999999999999887632110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLE 549 (1152)
+.. +. ...-..+...++.++..+... .+.||||||+|.+.. ...+.||..++
T Consensus 249 ~s~--------l~--sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lD 314 (437)
T 4b4t_I 249 GSE--------LI--QKYLGDGPRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLD 314 (437)
T ss_dssp SGG--------GC--CSSSSHHHHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHH
T ss_pred HHH--------hh--hccCchHHHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhh
Confidence 000 00 001112234577888877543 347999999998732 13445666666
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~A 622 (1152)
. ...+++||+|||.++.|+++|++ |+. .|.|+.|+.+++.++|+.++.... ++++ .++.||..+.| +..++
T Consensus 315 g~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~--l~~dvdl~~LA~~T~GfSGADI 392 (437)
T 4b4t_I 315 GFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMN--LSEDVNLETLVTTKDDLSGADI 392 (437)
T ss_dssp HCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSC--BCSCCCHHHHHHHCCSCCHHHH
T ss_pred CcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCC--CCCcCCHHHHHHhCCCCCHHHH
Confidence 4 44689999999999999999998 777 489999999999999988876544 3333 37888888776 67777
Q ss_pred HHHHHHHHHh---C--CCCCHHHHHHHHhc
Q 036794 623 EMTLEQLSLL---G--QRISVPLVQELVGL 647 (1152)
Q Consensus 623 in~LEkLsLl---g--~~IT~EdV~elVg~ 647 (1152)
.+++..+++. . ..|+.+|+.+++..
T Consensus 393 ~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 393 QAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 7777776544 2 24888888777643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.74 E-value=2.3e-17 Score=179.24 Aligned_cols=211 Identities=17% Similarity=0.164 Sum_probs=149.2
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHhC------------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMRR------------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~g------------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
+.+.+|++|+|++.+++.|...+... ..+..+||+||||||||++|+++|+.++......
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v-------- 82 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRV-------- 82 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEE--------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE--------
Confidence 33457999999999999998887542 5667899999999999999999999976542111
Q ss_pred ccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC-----------CHHHHHHHHHHHhh-
Q 036794 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL-----------SPDSWSAISKVVDR- 550 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L-----------s~eaqnaLLklLEe- 550 (1152)
.|..+.. .........+..++..+.. ..+.||||||+|.+ ....+..|+.+++.
T Consensus 83 ~~~~~~~----------~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~ 148 (285)
T 3h4m_A 83 VGSELVK----------KFIGEGASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEM 148 (285)
T ss_dssp EGGGGCC----------CSTTHHHHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHH
T ss_pred ehHHHHH----------hccchHHHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHh
Confidence 1111100 0001112345555655543 23479999999987 33455666666553
Q ss_pred ----CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHH
Q 036794 551 ----APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 551 ----pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~A 622 (1152)
...+++||++||.++.+++++.+ |+. .+.|++|+.+++.++++..+...++. .+..+..|+..+.| +.+++
T Consensus 149 ~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i 227 (285)
T 3h4m_A 149 DGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAEL 227 (285)
T ss_dssp HTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHH
T ss_pred hCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHH
Confidence 44689999999999999999998 886 69999999999999999888766543 22346777877766 66677
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
.+++..+... ...|+.+++.+++...
T Consensus 228 ~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~ 258 (285)
T 3h4m_A 228 KAICTEAGMNAIRELRDYVTMDDFRKAVEKI 258 (285)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 7766665433 2359999999887654
|
| >4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=3.9e-17 Score=190.47 Aligned_cols=209 Identities=19% Similarity=0.191 Sum_probs=151.1
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
.+.+|+||.|.+.+++.|.+.+.. -..+.+||||||||||||++|+++|.++++.+....
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~-------- 247 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLA-------- 247 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEE--------
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEe--------
Confidence 445899999999999999877532 245679999999999999999999999987632110
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------H---HHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------D---SWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------e---aqnaLLklLE 549 (1152)
+..+ . ......+...++.++..+... .+.||||||+|.+.. . ..+.||..|+
T Consensus 248 ~s~l--------~--~~~vGese~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ld 313 (434)
T 4b4t_M 248 APQL--------V--QMYIGEGAKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLD 313 (434)
T ss_dssp GGGG--------C--SSCSSHHHHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHT
T ss_pred hhhh--------h--hcccchHHHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhh
Confidence 0000 0 001112234577788776543 247999999997621 1 2456777777
Q ss_pred hC--CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHH
Q 036794 550 RA--PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDA 622 (1152)
Q Consensus 550 ep--p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~A 622 (1152)
.. ..+++||++||.++.|+++|++ |+. .|.|+.|+.+++.++++.+++...+ +++ .++.||..+.| +.+++
T Consensus 314 g~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~--~~dvdl~~lA~~t~G~sGADi 391 (434)
T 4b4t_M 314 GFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT--DDDINWQELARSTDEFNGAQL 391 (434)
T ss_dssp TSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB--CSCCCHHHHHHHCSSCCHHHH
T ss_pred ccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC--CCcCCHHHHHHhCCCCCHHHH
Confidence 53 3578999999999999999988 777 5999999999999999988877543 222 27788888877 77777
Q ss_pred HHHHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 623 EMTLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 623 in~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
.+++..+++. ...|+.+|+.+++..+
T Consensus 392 ~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 392 KAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 7777776544 2358999888877654
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.73 E-value=2.5e-16 Score=175.79 Aligned_cols=234 Identities=16% Similarity=0.187 Sum_probs=159.0
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|..+|.| ++++|++..++.|..++.. +..+..++|+||+|||||++++.+++.+...... ..++. ...|
T Consensus 10 ~~~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~-~i~~ 84 (386)
T 2qby_A 10 REYLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHV-YINT 84 (386)
T ss_dssp GGGGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEE-EEEH
T ss_pred hhhCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEE-EEEC
Confidence 3456667775 7889999999999988875 4556679999999999999999999988543110 00000 0111
Q ss_pred ccccC------CCccceEEeCCCCCCCHHHHHHH-HHHHhhCCCCCCceEEEEeCCCCCC----HHHHHHHHHHHhh-CC
Q 036794 485 ISHDR------GKSRNIKEVGPVGNFDFESILDL-LDNMVTSRPPSQYRIFVFDDCDTLS----PDSWSAISKVVDR-AP 552 (1152)
Q Consensus 485 ~~i~~------g~~~dviEIdaas~~~vdeIreL-le~a~~~P~~a~~kVVIIDEID~Ls----~eaqnaLLklLEe-pp 552 (1152)
..... .-...+....+........+.+. .+.+.. .+.+.||||||++.+. .+.+..|++.++. ..
T Consensus 85 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~ 161 (386)
T 2qby_A 85 RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNK 161 (386)
T ss_dssp HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCC
Confidence 10000 00000000000111223443333 333322 2346899999999885 4566777777765 35
Q ss_pred CCEEEEEEcCCCC---cchHHHHccc--eEEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHHHHhcC---CCHHHH
Q 036794 553 RRVVFILVSSSLD---ALPHIIISRC--QKFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLIASRSD---GSLRDA 622 (1152)
Q Consensus 553 ~~VifILaTN~~d---kL~~aL~SR~--qvI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelLAe~s~---GDLR~A 622 (1152)
.++.||++|+.++ .+.+.+.+|+ ..+.|++++.+++.+++...+... ...++++++++++.++. ||+|.+
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~ 241 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRA 241 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHH
Confidence 6889999998773 5777899998 689999999999999999887653 36789999999999988 999999
Q ss_pred HHHHHHHHHh----C-CCCCHHHHHHHHhccc
Q 036794 623 EMTLEQLSLL----G-QRISVPLVQELVGLIS 649 (1152)
Q Consensus 623 in~LEkLsLl----g-~~IT~EdV~elVg~v~ 649 (1152)
+++++.++.. + ..|+.++|.+++....
T Consensus 242 ~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 242 LDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 9999987654 2 3699999998876653
|
| >4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=7e-17 Score=188.51 Aligned_cols=207 Identities=16% Similarity=0.155 Sum_probs=149.6
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|.+++.. -..+.+||||||||||||++|+++|.++++.+... .+.
T Consensus 178 v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v--------~~s 249 (437)
T 4b4t_L 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFS--------PAS 249 (437)
T ss_dssp SCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEE--------EGG
T ss_pred CChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEE--------ehh
Confidence 4799999999999999887753 34567999999999999999999999998763211 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhhC
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDRA 551 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEep 551 (1152)
.+ ++.....+...++.++..+... .+.||||||+|.+.. ...+.||..|+..
T Consensus 250 ~l----------~sk~~Gese~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 315 (437)
T 4b4t_L 250 GI----------VDKYIGESARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGF 315 (437)
T ss_dssp GT----------CCSSSSHHHHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSS
T ss_pred hh----------ccccchHHHHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcc
Confidence 00 0011112234577777776543 348999999998732 1345677777753
Q ss_pred --CCCEEEEEEcCCCCcchHHHHcc--ce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 552 --PRRVVFILVSSSLDALPHIIISR--CQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 552 --p~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
..+++||++||.++.|+++|+++ +. .|.|+.|+..++.++++.++....+. ++-.++.|+..+.| +..++.++
T Consensus 316 ~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l 394 (437)
T 4b4t_L 316 DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNC 394 (437)
T ss_dssp SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHH
T ss_pred cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHH
Confidence 35799999999999999999886 55 59999999999999999888765432 11237788888877 77777777
Q ss_pred HHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 626 LEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 626 LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+..+++. ...|+.+|+.+++..
T Consensus 395 ~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 395 ATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 7766544 235888888777654
|
| >2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A | Back alignment and structure |
|---|
Probab=99.73 E-value=5.3e-17 Score=189.82 Aligned_cols=200 Identities=16% Similarity=0.170 Sum_probs=148.4
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHc-ccCCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALN-CQSLEQPKP 477 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~-~~~~e~~ep 477 (1152)
.+..++.+.+|++|+|++.+++.|..++.. ...++++||+||||||||++|++||+++. .....
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~---- 198 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFS---- 198 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEE----
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEE----
Confidence 344567788999999999999999988732 23457899999999999999999999973 22100
Q ss_pred CCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HHHHHHHHH
Q 036794 478 CGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PDSWSAISK 546 (1152)
Q Consensus 478 cg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~eaqnaLLk 546 (1152)
..|..+.. . .++ .....++.++..+.. ..+.||||||+|.+. ...++.|+.
T Consensus 199 ----v~~~~l~~-----~-~~g----~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~ 260 (444)
T 2zan_A 199 ----ISSSDLVS-----K-WLG----ESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLV 260 (444)
T ss_dssp ----ECCC-------------------CCCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHT
T ss_pred ----EeHHHHHh-----h-hcc----hHHHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCccccHHHHHHHHHHH
Confidence 01111100 0 000 011234556655543 345899999999983 235677888
Q ss_pred HHhh---CCCCEEEEEEcCCCCcchHHHHccce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 547 VVDR---APRRVVFILVSSSLDALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 547 lLEe---pp~~VifILaTN~~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
.|+. .+.+++||++||.++.++++|++||. .+.|+.|+.+++..++..++...+..+++..+..|+..+.| +.++
T Consensus 261 ~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgad 340 (444)
T 2zan_A 261 QMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGAD 340 (444)
T ss_dssp TTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHH
T ss_pred HHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHH
Confidence 8876 45789999999999999999999996 68899999999999999999888878899999999999988 7778
Q ss_pred HHHHHHHHHH
Q 036794 622 AEMTLEQLSL 631 (1152)
Q Consensus 622 Ain~LEkLsL 631 (1152)
+.+++..+++
T Consensus 341 l~~l~~~a~~ 350 (444)
T 2zan_A 341 ISIIVRDALM 350 (444)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 7777776653
|
| >4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.73 E-value=1e-16 Score=187.37 Aligned_cols=206 Identities=15% Similarity=0.165 Sum_probs=148.8
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|++++.. -..+.+||||||||||||++|+++|+++++.+... .+.
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~v--------s~s 277 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRV--------IGS 277 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEE--------EGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEE--------EhH
Confidence 4799999999999999887642 25677999999999999999999999998763211 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------H---HHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------D---SWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------e---aqnaLLklLEe- 550 (1152)
.+ . ......+...++.++..+... .+.||||||+|.+.. . ..+.||..|+.
T Consensus 278 ~L--------~--sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~ 343 (467)
T 4b4t_H 278 EL--------V--QKYVGEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF 343 (467)
T ss_dssp GG--------C--CCSSSHHHHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS
T ss_pred Hh--------h--cccCCHHHHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc
Confidence 10 0 001112235678888877544 347999999998832 1 23455666654
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain 624 (1152)
...+++||++||.++.|+++|++ |+. .|.|+.|+.+++.++|+.+++...+ +.+ .++.|+..+.| +..++.+
T Consensus 344 ~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l--~~dvdl~~LA~~T~GfSGADI~~ 421 (467)
T 4b4t_H 344 DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV--ERGIRWELISRLCPNSTGAELRS 421 (467)
T ss_dssp CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB--CSSCCHHHHHHHCCSCCHHHHHH
T ss_pred CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC--CCCCCHHHHHHHCCCCCHHHHHH
Confidence 34689999999999999999998 887 5999999999999999888765443 322 36778888877 6777777
Q ss_pred HHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 625 TLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 625 ~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
++..+++. ...|+.+|+.+++..
T Consensus 422 l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 422 VCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 77766544 235788887766543
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-18 Score=184.40 Aligned_cols=202 Identities=19% Similarity=0.268 Sum_probs=141.7
Q ss_pred cCcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~ 491 (1152)
..+++|++.+++.|..++..+. ....+||+||+|||||++|++||+.+.+..... . ...|..+....
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~----~-~~~~~~~~~~~ 90 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM----I-RIDMTEYMEKH 90 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE----E-EEEGGGCCSTT
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcce----E-Eeecccccccc
Confidence 3678999999999998887752 235799999999999999999999986542111 0 01111111100
Q ss_pred c-cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEE
Q 036794 492 S-RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFIL 559 (1152)
Q Consensus 492 ~-~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifIL 559 (1152)
. ..++. ...+..+......+...+.. ..+.||||||++.++...++.|+++|++.. .+++||+
T Consensus 91 ~~~~l~g-~~~~~~~~~~~~~~~~~~~~----~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ 165 (311)
T 4fcw_A 91 AVSRLIG-APPGYVGYEEGGQLTEAVRR----RPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM 165 (311)
T ss_dssp HHHHHHC-CCTTSTTTTTCCHHHHHHHH----CSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred cHHHhcC-CCCccccccccchHHHHHHh----CCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence 0 00000 00111121111122222222 235899999999999999999999999843 4788999
Q ss_pred EcCC--------------------------CCcchHHHHccc-eEEEecCCChhHHHHHHHHHHHHc---------CCCC
Q 036794 560 VSSS--------------------------LDALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKE---------GIEI 603 (1152)
Q Consensus 560 aTN~--------------------------~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakke---------Gl~I 603 (1152)
+||. ...+.++|++|| ..+.|.+++.+++..++..++.+. .+.+
T Consensus 166 ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 245 (311)
T 4fcw_A 166 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLEL 245 (311)
T ss_dssp EESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEE
T ss_pred ecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 9997 335778899999 579999999999999888766542 4568
Q ss_pred CHHHHHHHHHh-c--CCCHHHHHHHHHHHHH
Q 036794 604 DKDALKLIASR-S--DGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 604 d~dALelLAe~-s--~GDLR~Ain~LEkLsL 631 (1152)
++++++.|+.+ | +||+|++.+.++++..
T Consensus 246 ~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 246 TEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp CHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred CHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 99999999997 6 6999999999998753
|
| >4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=1.4e-16 Score=185.54 Aligned_cols=206 Identities=19% Similarity=0.201 Sum_probs=149.8
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+||.|.+.+++.|.+.+.. -..+.+||||||||||||++|+++|+++++.+... .+.
T Consensus 169 v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v--------~~~ 240 (428)
T 4b4t_K 169 VTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRV--------NGS 240 (428)
T ss_dssp CCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEE--------EGG
T ss_pred CCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEE--------ecc
Confidence 4799999999999999887743 34567899999999999999999999998663211 000
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------------HHHHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------------PDSWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------------~eaqnaLLklLEe- 550 (1152)
.+ ++.........++++|..+... .+.||||||+|.+. ....+.||..|+.
T Consensus 241 ~l----------~~~~~Ge~e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~ 306 (428)
T 4b4t_K 241 EF----------VHKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGF 306 (428)
T ss_dssp GT----------CCSSCSHHHHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHS
T ss_pred hh----------hccccchhHHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCC
Confidence 00 0011112245688888877543 34899999998652 1245678888876
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEec-CCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFP-KMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~-~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ai 623 (1152)
...+++||++||.++.++++|++ |+. .|.|+ .|+..+...+++.++....+ +++ .++.||..+.| +.+++.
T Consensus 307 ~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l--~~~~dl~~lA~~t~G~sgadi~ 384 (428)
T 4b4t_K 307 DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL--APEADLDSLIIRNDSLSGAVIA 384 (428)
T ss_dssp CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB--CTTCCHHHHHHHTTTCCHHHHH
T ss_pred CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC--CcccCHHHHHHHCCCCCHHHHH
Confidence 44689999999999999999998 776 48896 67888899999888876543 333 37888888777 777777
Q ss_pred HHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 624 MTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 624 n~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
+++..+++. ...|+.+|+.+++..
T Consensus 385 ~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 385 AIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 777776544 235888888877643
|
| >2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.6e-16 Score=176.97 Aligned_cols=220 Identities=11% Similarity=0.111 Sum_probs=154.8
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|.+++|++.++..+..++..+. .+||+||||||||++|+++++.+++..... .|...
T Consensus 14 ~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~~---~vll~G~pGtGKT~la~~la~~~~~~~~~i--------~~~~~ 82 (331)
T 2r44_A 14 YRNKIKEVIDEVGKVVVGQKYMINRLLIGICTGG---HILLEGVPGLAKTLSVNTLAKTMDLDFHRI--------QFTPD 82 (331)
T ss_dssp HHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHTC---CEEEESCCCHHHHHHHHHHHHHTTCCEEEE--------ECCTT
T ss_pred HHHHHHHHHHHhccceeCcHHHHHHHHHHHHcCC---eEEEECCCCCcHHHHHHHHHHHhCCCeEEE--------ecCCC
Confidence 4578999999999999999999999998887753 589999999999999999999986542111 11000
Q ss_pred cC-CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCE
Q 036794 488 DR-GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRV 555 (1152)
Q Consensus 488 ~~-g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~V 555 (1152)
.. ........++.... .+ .....+. ...||||||++.++...++.|+..+++. +..+
T Consensus 83 ~~~~~l~g~~~~~~~~~-~~--------~~~~g~l--~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~ 151 (331)
T 2r44_A 83 LLPSDLIGTMIYNQHKG-NF--------EVKKGPV--FSNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLDNPF 151 (331)
T ss_dssp CCHHHHHEEEEEETTTT-EE--------EEEECTT--CSSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECCSSC
T ss_pred CChhhcCCceeecCCCC-ce--------EeccCcc--cccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECCCCE
Confidence 00 00000000000000 00 0000011 1369999999999999999999999973 4566
Q ss_pred EEEEEcCCCC-----cchHHHHccceE-EEecCCChhHHHHHHHHHHHH----------------------cCCCCCHHH
Q 036794 556 VFILVSSSLD-----ALPHIIISRCQK-FFFPKMKDADIIYTLQWIASK----------------------EGIEIDKDA 607 (1152)
Q Consensus 556 ifILaTN~~d-----kL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakk----------------------eGl~Id~dA 607 (1152)
++|+++|..+ .++++|++||.. +.|.+|+.+++.++|+..+.. .++.+++++
T Consensus 152 ~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~ 231 (331)
T 2r44_A 152 LVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESL 231 (331)
T ss_dssp EEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHH
T ss_pred EEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHH
Confidence 7776666332 388999999984 999999999999999887654 277899999
Q ss_pred HHHHHHhc-----CC---------------CHHHHHHHHHHHH---Hh-CC-CCCHHHHHHHHhccc
Q 036794 608 LKLIASRS-----DG---------------SLRDAEMTLEQLS---LL-GQ-RISVPLVQELVGLIS 649 (1152)
Q Consensus 608 LelLAe~s-----~G---------------DLR~Ain~LEkLs---Ll-g~-~IT~EdV~elVg~v~ 649 (1152)
+++++... .+ +.|.+++.+..+. .+ +. .|+.++|.+++..+.
T Consensus 232 ~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl 298 (331)
T 2r44_A 232 EKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDIL 298 (331)
T ss_dssp HHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHh
Confidence 99998763 22 7999998887653 33 22 489999998876543
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.5e-16 Score=185.78 Aligned_cols=210 Identities=14% Similarity=0.160 Sum_probs=150.0
Q ss_pred CcCccc-C--cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccce
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNI 495 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dv 495 (1152)
+|++++ | +..+...+...+......+.++||||+|+|||++|+++++.+....... .+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~-------------------~v 163 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDL-------------------RV 163 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCSS-------------------CE
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCC-------------------eE
Confidence 799988 5 4455566666665533256799999999999999999999986442111 02
Q ss_pred EEeCCCCCCCHHHHHHHHHHH---hhCCCCC-CceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCC-C--
Q 036794 496 KEVGPVGNFDFESILDLLDNM---VTSRPPS-QYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSL-D-- 565 (1152)
Q Consensus 496 iEIdaas~~~vdeIreLle~a---~~~P~~a-~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~-d-- 565 (1152)
..++... + ..++...+... ....... ...||||||++.+.. ..++.|+.+++.. .....+|++|+.+ .
T Consensus 164 ~~v~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 164 MYITSEK-F-LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKL 241 (440)
T ss_dssp EEEEHHH-H-HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGC
T ss_pred EEeeHHH-H-HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHH
Confidence 2222110 0 11111111100 0000002 457999999999986 6788888888762 3345666677653 3
Q ss_pred -cchHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh----CCCCC
Q 036794 566 -ALPHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----GQRIS 637 (1152)
Q Consensus 566 -kL~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----g~~IT 637 (1152)
.+.+.|.+|| ..+.|++|+.+++..+|...+...++.++++++++|+..++||+|++.+.|+++..+ +..||
T Consensus 242 ~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~~~~~a~~~~~~It 321 (440)
T 2z4s_A 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVD 321 (440)
T ss_dssp SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHHHHHHHHHSSSCCC
T ss_pred HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCC
Confidence 3788999999 589999999999999999999999999999999999999999999999999998654 44699
Q ss_pred HHHHHHHHhccc
Q 036794 638 VPLVQELVGLIS 649 (1152)
Q Consensus 638 ~EdV~elVg~v~ 649 (1152)
.+++.+++....
T Consensus 322 ~~~~~~~l~~~~ 333 (440)
T 2z4s_A 322 LKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHTSTTT
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1e-16 Score=173.10 Aligned_cols=211 Identities=10% Similarity=0.096 Sum_probs=132.4
Q ss_pred CcCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceE
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIK 496 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dvi 496 (1152)
+|++++|++..+..+.+.+.. ......+||+||+|||||++|+++++.+.... .|+. ...|..+..... ..++
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~----~~~~-~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ----GPFI-SLNCAALNENLLDSELF 78 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT----SCEE-EEEGGGSCHHHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC----CCeE-EEecCCCChhHHHHHhc
Confidence 699999999988888776654 44456699999999999999999998765321 1111 112221100000 0000
Q ss_pred EeCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC
Q 036794 497 EVGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL 564 (1152)
Q Consensus 497 EIdaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~ 564 (1152)
........+. .....+++. +.+++|||||++.++.+.++.|+++|++. +.++.||++||..
T Consensus 79 g~~~~~~~g~~~~~~~~l~~-------a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~ 151 (265)
T 2bjv_A 79 GHEAGAFTGAQKRHPGRFER-------ADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNAD 151 (265)
T ss_dssp CCC---------CCCCHHHH-------TTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSC
T ss_pred CCcccccccccccccchhhh-------cCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcC
Confidence 0000000000 000001111 23579999999999999999999999973 3578899999864
Q ss_pred -C------cchHHHHccce--EEEecCCCh--hHHHHHH----HHHHHHcCC----CCCHHHHHHHHHh-cCCCHHHHHH
Q 036794 565 -D------ALPHIIISRCQ--KFFFPKMKD--ADIIYTL----QWIASKEGI----EIDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 565 -d------kL~~aL~SR~q--vI~F~~p~~--~EI~eiL----~~iakkeGl----~Id~dALelLAe~-s~GDLR~Ain 624 (1152)
. .+.+.|.+|+. .+.++++.. +++..++ ...+...+. .+++++++.|..+ |+||+|++.+
T Consensus 152 ~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~gn~reL~~ 231 (265)
T 2bjv_A 152 LPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPGNIRELKN 231 (265)
T ss_dssp HHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCCCHHHHHH
Confidence 1 36688999985 477777765 4555443 444445555 6899999999877 7999999999
Q ss_pred HHHHHHHh--CCCCCHHHH
Q 036794 625 TLEQLSLL--GQRISVPLV 641 (1152)
Q Consensus 625 ~LEkLsLl--g~~IT~EdV 641 (1152)
.|+.++.. +..|+.+++
T Consensus 232 ~l~~~~~~~~~~~i~~~~l 250 (265)
T 2bjv_A 232 VVERSVYRHGTSDYPLDDI 250 (265)
T ss_dssp HHHHHHHHHCCSSSCBCCC
T ss_pred HHHHHHHhCCCCcCcHHHc
Confidence 99998765 345776554
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=4.3e-16 Score=173.23 Aligned_cols=183 Identities=14% Similarity=0.206 Sum_probs=134.0
Q ss_pred CcCccc-C--cHHHHHHHHHHHHhCC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMRRK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|++++ | +..+...+..++.... .++.+||+||+|||||++|+++++.+..... +
T Consensus 9 ~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~----~----------------- 67 (324)
T 1l8q_A 9 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY----R----------------- 67 (324)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTC----C-----------------
T ss_pred CcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCC----E-----------------
Confidence 699987 5 5566777777776643 4456899999999999999999998854310 0
Q ss_pred eEEeCCCCCCCHHHHHH---------HHHHHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcC
Q 036794 495 IKEVGPVGNFDFESILD---------LLDNMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSS 562 (1152)
Q Consensus 495 viEIdaas~~~vdeIre---------Lle~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN 562 (1152)
++.++... . ...+.. +.... ....+|||||++.+.. ..++.|+.+++.. .....+|++++
T Consensus 68 ~~~i~~~~-~-~~~~~~~~~~~~~~~~~~~~------~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 68 VIYSSADD-F-AQAMVEHLKKGTINEFRNMY------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp EEEEEHHH-H-HHHHHHHHHHTCHHHHHHHH------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred EEEEEHHH-H-HHHHHHHHHcCcHHHHHHHh------cCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 22221100 0 011111 11111 2357999999999986 6777888887652 23344555555
Q ss_pred -CCC---cchHHHHccc---eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 563 -SLD---ALPHIIISRC---QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 563 -~~d---kL~~aL~SR~---qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
.+. .+.+.|.+|+ ..+.|++ +.+++..++...+...++.++++++++|+.++ ||+|.+.+.|+++..+
T Consensus 140 ~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 140 RHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLK 214 (324)
T ss_dssp SCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHHH
T ss_pred CChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHHc
Confidence 333 5788999999 6899999 99999999999999999999999999999999 9999999999998766
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=99.68 E-value=3.6e-16 Score=184.55 Aligned_cols=208 Identities=20% Similarity=0.242 Sum_probs=153.8
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..+|+||+|++.+++.|.+.+.. .+.+.++||+||||||||++|+++|.+++..+... +|.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~i--------s~~ 83 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHI--------SGS 83 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEE--------EGG
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeC--------CHH
Confidence 34899999999999999887653 24567899999999999999999999886542111 111
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe- 550 (1152)
.+... ....+...++.++..+... .+.||||||+|.+.. ..++.|+..|+.
T Consensus 84 ~~~~~----------~~g~~~~~~r~lf~~A~~~----~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~ 149 (476)
T 2ce7_A 84 DFVEL----------FVGVGAARVRDLFAQAKAH----APCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGF 149 (476)
T ss_dssp GTTTC----------CTTHHHHHHHHHHHHHHHT----CSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHS
T ss_pred HHHHH----------HhcccHHHHHHHHHHHHhc----CCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhcc
Confidence 11100 0112345677788776542 348999999998843 246778887774
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-RDAEM 624 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R~Ain 624 (1152)
...+++||++||.++.+++++++ |+. .|.|+.|+.+++.++++.+++... +.+++ +..|+..++|+. +++.+
T Consensus 150 ~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~--l~~~v~l~~la~~t~G~sgadL~~ 227 (476)
T 2ce7_A 150 DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKP--LAEDVNLEIIAKRTPGFVGADLEN 227 (476)
T ss_dssp CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCHHHHHHTCTTCCHHHHHH
T ss_pred CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCC--CcchhhHHHHHHhcCCCcHHHHHH
Confidence 34589999999999989988886 776 689999999999999988776544 33333 778999999977 89999
Q ss_pred HHHHHHHh-----CCCCCHHHHHHHHhcc
Q 036794 625 TLEQLSLL-----GQRISVPLVQELVGLI 648 (1152)
Q Consensus 625 ~LEkLsLl-----g~~IT~EdV~elVg~v 648 (1152)
+++.+++. ...|+.+++.+++..+
T Consensus 228 lv~~Aal~A~~~~~~~I~~~dl~~al~~v 256 (476)
T 2ce7_A 228 LVNEAALLAAREGRDKITMKDFEEAIDRV 256 (476)
T ss_dssp HHHHHHHHHHHTTCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCeecHHHHHHHHHHH
Confidence 99987654 2359999988877654
|
| >1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-16 Score=174.58 Aligned_cols=211 Identities=15% Similarity=0.146 Sum_probs=139.1
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEI 498 (1152)
++|+|++..++.+...+.. ......+||+||+|||||++|++|++....... |+. ..+|..+..... ..++..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~----~~v-~v~~~~~~~~l~~~~lfg~ 76 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSDR----PLV-TLNCAALNESLLESELFGH 76 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSS----CCC-EEECSSCCHHHHHHHHTCC
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccCC----CeE-EEeCCCCChHHHHHHhcCc
Confidence 4689999999888877765 344556999999999999999999997643321 111 112222110000 000000
Q ss_pred CCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC--
Q 036794 499 GPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL-- 564 (1152)
Q Consensus 499 daas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~-- 564 (1152)
......+. ......++.+ .+++|||||++.|+...+..|+++|++. +.++.||++||..
T Consensus 77 ~~g~~tg~~~~~~g~~~~a-------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~ 149 (304)
T 1ojl_A 77 EKGAFTGADKRREGRFVEA-------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLA 149 (304)
T ss_dssp CSSCCC---CCCCCHHHHH-------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHH
T ss_pred cccccCchhhhhcCHHHhc-------CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHH
Confidence 00000000 0001122222 3479999999999999999999999974 3578999999865
Q ss_pred -----CcchHHHHccce--EEEecCCC--hhHHHHHHHHHHH----HcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 565 -----DALPHIIISRCQ--KFFFPKMK--DADIIYTLQWIAS----KEG---IEIDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 565 -----dkL~~aL~SR~q--vI~F~~p~--~~EI~eiL~~iak----keG---l~Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
..+.+.|.+|+. .|.++++. .+++..++..++. ..+ ..+++++++.|..+ |+||+|++.|.++
T Consensus 150 ~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~~~l~ 229 (304)
T 1ojl_A 150 EEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELENAIE 229 (304)
T ss_dssp HHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHHHHHH
T ss_pred HHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 135677999985 36677777 4566665554443 333 56999999999999 7999999999999
Q ss_pred HHHHhC--CCCCHHHHHH
Q 036794 628 QLSLLG--QRISVPLVQE 643 (1152)
Q Consensus 628 kLsLlg--~~IT~EdV~e 643 (1152)
+++... ..|+.+++..
T Consensus 230 ~~~~~~~~~~i~~~~l~~ 247 (304)
T 1ojl_A 230 RAVVLLTGEYISERELPL 247 (304)
T ss_dssp HHHHHCCSSSBCGGGSCG
T ss_pred HHHHhCCCCcccHHhhhh
Confidence 987763 4588777653
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.2e-16 Score=172.66 Aligned_cols=196 Identities=19% Similarity=0.224 Sum_probs=139.2
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
++.+.+|++|+|++.+++.|.+++.. -..+.++||+||||||||++|+++|+.+++.....
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v------- 80 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI------- 80 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEE-------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEE-------
Confidence 45566899999999999999988864 25567899999999999999999999876442111
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHH
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------------SWSAISKV 547 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------------aqnaLLkl 547 (1152)
.|..+... .++ .....++.+++.+... .+.||||||+|.+... .++.|+..
T Consensus 81 -~~~~l~~~------~~g----~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~ 145 (301)
T 3cf0_A 81 -KGPELLTM------WFG----ESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTE 145 (301)
T ss_dssp -CHHHHHHH------HHT----TCTTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHH
T ss_pred -EhHHHHhh------hcC----chHHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHH
Confidence 11111000 000 1123456677665432 3489999999987543 46789999
Q ss_pred Hhh--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHH
Q 036794 548 VDR--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRD 621 (1152)
Q Consensus 548 LEe--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~ 621 (1152)
|+. ...+++||++||.++.+++++++ |+. .+.|+.|+.+++.++++.+++..++. .+..++.|+..+.| ..++
T Consensus 146 l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~d 224 (301)
T 3cf0_A 146 MDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGAD 224 (301)
T ss_dssp HHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHH
T ss_pred hhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHH
Confidence 885 34689999999999999999988 886 69999999999999999988876643 11224556666544 4557
Q ss_pred HHHHHHHHHHh
Q 036794 622 AEMTLEQLSLL 632 (1152)
Q Consensus 622 Ain~LEkLsLl 632 (1152)
+.++++.+++.
T Consensus 225 l~~l~~~a~~~ 235 (301)
T 3cf0_A 225 LTEICQRACKL 235 (301)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 77777776543
|
| >3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.65 E-value=5.3e-16 Score=182.56 Aligned_cols=199 Identities=16% Similarity=0.154 Sum_probs=143.7
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...|.++|+|..|++|||++..++.+...+.....+ .+||+||||||||++|++||+.+.+...+.. ...
T Consensus 167 ~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~-~~LL~G~pG~GKT~la~~la~~l~~~~~p~~----l~~----- 236 (468)
T 3pxg_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKN-NPVLIGEPGVGKTAIAEGLAQQIINNEVPEI----LRD----- 236 (468)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSC-EEEEESCTTTTTHHHHHHHHHHHHSSCSCTT----TSS-----
T ss_pred HHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCC-CeEEECCCCCCHHHHHHHHHHHHHhCCCChh----hcC-----
Confidence 457899999999999999999999999999875554 5799999999999999999999876543211 000
Q ss_pred cCCCccceEEeCCCC-CC--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVGPVG-NF--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEIdaas-~~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..++.++... .. ....+..+++.+.. ..+.||||| ...++++.|+.+|++ ..+.+|++||..
T Consensus 237 -----~~~~~l~~~~~~~g~~e~~~~~~~~~~~~----~~~~iLfiD----~~~~a~~~L~~~L~~--g~v~vI~at~~~ 301 (468)
T 3pxg_A 237 -----KRVMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLD 301 (468)
T ss_dssp -----CCEECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTT
T ss_pred -----CeEEEeeCCccccchHHHHHHHHHHHHHh----cCCeEEEEe----CchhHHHHHHHhhcC--CCEEEEecCCHH
Confidence 0011111110 00 01345666766643 245799999 455678889999985 578999999877
Q ss_pred C-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCC------HHHHHHHHHHH
Q 036794 565 D-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDGS------LRDAEMTLEQL 629 (1152)
Q Consensus 565 d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~GD------LR~Ain~LEkL 629 (1152)
. .++++|.+||+.|.|++|+.+++..+|+.++.. .++.++++++..++.++.+. .+.+++.|+.+
T Consensus 302 e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll~~a 381 (468)
T 3pxg_A 302 EYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (468)
T ss_dssp TTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHHHHH
Confidence 6 478899999999999999999999999988766 78899999999999885443 44688888876
Q ss_pred HH
Q 036794 630 SL 631 (1152)
Q Consensus 630 sL 631 (1152)
+.
T Consensus 382 ~~ 383 (468)
T 3pxg_A 382 GS 383 (468)
T ss_dssp HH
T ss_pred HH
Confidence 53
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-17 Score=176.43 Aligned_cols=212 Identities=17% Similarity=0.192 Sum_probs=146.5
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCN 482 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~ 482 (1152)
++.+.+|++|+|++.+++.|.+++.. ...+.++||+||||||||++|+++|+.+++.....+ |.
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~-----~~ 78 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMG-----GS 78 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCC-----SC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEec-----hH
Confidence 55667899999999999888877652 344567999999999999999999999876533221 11
Q ss_pred ccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH---------------HHHHHHHH
Q 036794 483 SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD---------------SWSAISKV 547 (1152)
Q Consensus 483 ~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e---------------aqnaLLkl 547 (1152)
.......+. +...++.+++.+... ...||||||+|.+... .++.|+..
T Consensus 79 ~~~~~~~~~-------------~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~ 141 (268)
T 2r62_A 79 SFIEMFVGL-------------GASRVRDLFETAKKQ----APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAE 141 (268)
T ss_dssp TTTTSCSSS-------------CSSSSSTTHHHHHHS----CSCEEEESCGGGTTC----------CCCSCSSTTTTTTT
T ss_pred HHHHhhcch-------------HHHHHHHHHHHHHhc----CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHH
Confidence 111110010 011122344444322 3479999999998653 35567777
Q ss_pred HhhCC---CCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHH
Q 036794 548 VDRAP---RRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLR 620 (1152)
Q Consensus 548 LEepp---~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR 620 (1152)
++... ..++||++||.++.+++++.+ |+. .+.|+.|+.+++.++|+.++....+. ++..++.|+..+.| ..+
T Consensus 142 l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~ 220 (268)
T 2r62_A 142 MDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGA 220 (268)
T ss_dssp TTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHH
T ss_pred hhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHH
Confidence 77632 358899999999888888888 664 58999999999999998887654332 22235667777766 567
Q ss_pred HHHHHHHHHHHhC-----CCCCHHHHHHHHhcc
Q 036794 621 DAEMTLEQLSLLG-----QRISVPLVQELVGLI 648 (1152)
Q Consensus 621 ~Ain~LEkLsLlg-----~~IT~EdV~elVg~v 648 (1152)
++.+.++.++..+ ..|+.+++.+++...
T Consensus 221 dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 221 DLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp HHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred HHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 8888888887663 359999998877643
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.62 E-value=1.3e-15 Score=173.15 Aligned_cols=211 Identities=21% Similarity=0.208 Sum_probs=138.9
Q ss_pred CcccCcHHHHHHHHHHHH----h-------------------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 421 RDLVGQNLVAQALSNAVM----R-------------------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~----~-------------------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+.|+||+.+++.|..++. . ....+.+||+||||||||++|++||+.+++..
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 458999999999988772 1 12345699999999999999999999986432
Q ss_pred CCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH------------
Q 036794 472 LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD------------ 539 (1152)
Q Consensus 472 ~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e------------ 539 (1152)
. . ..|..+.... + + +......+..++.........+.++||||||++.+...
T Consensus 101 ~-------~-~~~~~~~~~~---~--~---g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~ 164 (376)
T 1um8_A 101 A-------I-SDATSLTEAG---Y--V---GEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSG 164 (376)
T ss_dssp E-------E-EEGGGCC----------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------C
T ss_pred E-------E-ecchhhhhcC---c--C---CccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccch
Confidence 1 1 1122211100 0 0 00011223333333211101135689999999999887
Q ss_pred --HHHHHHHHHhhCC---------------------CCEEEEEEcCC---------------------------------
Q 036794 540 --SWSAISKVVDRAP---------------------RRVVFILVSSS--------------------------------- 563 (1152)
Q Consensus 540 --aqnaLLklLEepp---------------------~~VifILaTN~--------------------------------- 563 (1152)
.++.|+++|++.. .+++||+++|.
T Consensus 165 ~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~ 244 (376)
T 1um8_A 165 EGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILH 244 (376)
T ss_dssp HHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGG
T ss_pred HHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHh
Confidence 8999999999631 45678887761
Q ss_pred --------CCcchHHHHccc-eEEEecCCChhHHHHHHHH----HHH-------H--cCCCCCHHHHHHHHHh-c--CCC
Q 036794 564 --------LDALPHIIISRC-QKFFFPKMKDADIIYTLQW----IAS-------K--EGIEIDKDALKLIASR-S--DGS 618 (1152)
Q Consensus 564 --------~dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~----iak-------k--eGl~Id~dALelLAe~-s--~GD 618 (1152)
...+.++|.+|+ .++.|++++.+++..++.. ++. . .++.++++++++|+.+ + .||
T Consensus 245 ~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~ 324 (376)
T 1um8_A 245 LVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTG 324 (376)
T ss_dssp GCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCT
T ss_pred hcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccC
Confidence 012567899999 6799999999999988862 211 1 2456899999999999 4 399
Q ss_pred HHHHHHHHHHHHHh-----C----C--CCCHHHHHHHHhc
Q 036794 619 LRDAEMTLEQLSLL-----G----Q--RISVPLVQELVGL 647 (1152)
Q Consensus 619 LR~Ain~LEkLsLl-----g----~--~IT~EdV~elVg~ 647 (1152)
+|.+.+.|+++... . + .||.++|.+....
T Consensus 325 ~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~~ 364 (376)
T 1um8_A 325 ARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAEP 364 (376)
T ss_dssp GGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSCC
T ss_pred cHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCCc
Confidence 99999999997542 1 1 3888888775543
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.6e-15 Score=187.96 Aligned_cols=188 Identities=18% Similarity=0.280 Sum_probs=137.0
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCC--------cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVG--------LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~--------~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~ 491 (1152)
..+++||+.+++.|..++...... ..+||+||||||||++|+++|+.+..... ++. ...|..+...
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~----~~i-~i~~s~~~~~- 563 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE----SMI-RIDMSEYMEK- 563 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTT----CEE-EEEGGGGCSS-
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc----ceE-EEechhcccc-
Confidence 467999999999999998864321 26999999999999999999999854321 111 1112222111
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----------CCCCEEEEEE
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR-----------APRRVVFILV 560 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe-----------pp~~VifILa 560 (1152)
.... ...+.+.+.. ..+.||||||++.++.+.++.|+++|++ ...+++||++
T Consensus 564 ----~~~~---------~~~l~~~~~~----~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~t 626 (758)
T 3pxi_A 564 ----HSTS---------GGQLTEKVRR----KPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMT 626 (758)
T ss_dssp ----CCCC------------CHHHHHH----CSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEE
T ss_pred ----cccc---------cchhhHHHHh----CCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEe
Confidence 1000 1112222222 2357999999999999999999999998 3468899999
Q ss_pred cCCCCc------------chHHHHccc-eEEEecCCChhHHHHHHHHHHHH---------cCCCCCHHHHHHHHHh---c
Q 036794 561 SSSLDA------------LPHIIISRC-QKFFFPKMKDADIIYTLQWIASK---------EGIEIDKDALKLIASR---S 615 (1152)
Q Consensus 561 TN~~dk------------L~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakk---------eGl~Id~dALelLAe~---s 615 (1152)
||.... +.++|++|+ .+|.|++++.+++..++...+.. ..+.++++++++|+.. |
T Consensus 627 tn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~ 706 (758)
T 3pxi_A 627 SNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDL 706 (758)
T ss_dssp ESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCT
T ss_pred CCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCC
Confidence 995432 788899999 68999999999999988877654 2456899999999875 8
Q ss_pred CCCHHHHHHHHHHHH
Q 036794 616 DGSLRDAEMTLEQLS 630 (1152)
Q Consensus 616 ~GDLR~Ain~LEkLs 630 (1152)
+|++|.+.+.|+++.
T Consensus 707 ~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 707 EYGARPLRRAIQKHV 721 (758)
T ss_dssp TTTTTTHHHHHHHHT
T ss_pred CCCChHHHHHHHHHH
Confidence 899999999999863
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.7e-15 Score=187.39 Aligned_cols=197 Identities=18% Similarity=0.281 Sum_probs=142.7
Q ss_pred CcccCcHHHHHHHHHHHHhCC--------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-
Q 036794 421 RDLVGQNLVAQALSNAVMRRK--------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK- 491 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gr--------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~- 491 (1152)
.+++||+.++..|..++.... ....+||+||+|||||++|+++|+.+++.... ..|..+....
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~--------i~~s~~~~~~~ 529 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR--------FDMSEYMERHT 529 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE--------EEGGGCSSSSC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEE--------Eechhhcchhh
Confidence 579999999999988887532 22379999999999999999999998643211 1122211110
Q ss_pred ccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEEE
Q 036794 492 SRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFILV 560 (1152)
Q Consensus 492 ~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifILa 560 (1152)
...++. .+.+..+.+....+.+.+... .+.||||||++.++++.++.|+++|++.. .+++||++
T Consensus 530 ~~~l~g-~~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~t 604 (758)
T 1r6b_X 530 VSRLIG-APPGYVGFDQGGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMT 604 (758)
T ss_dssp CSSSCC-CCSCSHHHHHTTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEE
T ss_pred HhhhcC-CCCCCcCccccchHHHHHHhC----CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEe
Confidence 000110 112344444444444444443 36899999999999999999999999732 57889999
Q ss_pred cCCCC-------------------------cchHHHHccc-eEEEecCCChhHHHHHHHHHHHHc---------CCCCCH
Q 036794 561 SSSLD-------------------------ALPHIIISRC-QKFFFPKMKDADIIYTLQWIASKE---------GIEIDK 605 (1152)
Q Consensus 561 TN~~d-------------------------kL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakke---------Gl~Id~ 605 (1152)
||... .+.++|++|+ .+|.|++++.+++..++...+.+. .+.+++
T Consensus 605 sN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~ 684 (758)
T 1r6b_X 605 TNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQ 684 (758)
T ss_dssp ECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECH
T ss_pred cCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCH
Confidence 98632 5778899999 579999999999999988877632 357899
Q ss_pred HHHHHHHHh-cCCC--HHHHHHHHHHHH
Q 036794 606 DALKLIASR-SDGS--LRDAEMTLEQLS 630 (1152)
Q Consensus 606 dALelLAe~-s~GD--LR~Ain~LEkLs 630 (1152)
+++++|+.+ |+++ .|.+.+.|+++.
T Consensus 685 ~a~~~l~~~~~~~~~g~R~l~~~i~~~~ 712 (758)
T 1r6b_X 685 EARNWLAEKGYDRAMGARPMARVIQDNL 712 (758)
T ss_dssp HHHHHHHHHHCBTTTBTTTHHHHHHHHH
T ss_pred HHHHHHHHhCCCcCCCchHHHHHHHHHH
Confidence 999999987 5555 999999998864
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=99.61 E-value=1.6e-15 Score=181.62 Aligned_cols=211 Identities=18% Similarity=0.245 Sum_probs=141.1
Q ss_pred cCcccCcHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 420 FRDLVGQNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
.++++|++.++..+...+.- .-.+..+||+||||||||++|++||..++....... |... .+
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~--------~~~~-----~~ 146 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRIS--------LGGV-----RD 146 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEEC--------CCC--------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEE--------eccc-----ch
Confidence 45689999998888765432 123457999999999999999999999865432111 1111 00
Q ss_pred eEEeCCC--CCC--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhhCC--------------
Q 036794 495 IKEVGPV--GNF--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDRAP-------------- 552 (1152)
Q Consensus 495 viEIdaa--s~~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEepp-------------- 552 (1152)
..++... ... ....+...+..+ .....|+||||+|.+... .+++|+++|+...
T Consensus 147 ~~~~~g~~~~~ig~~~~~~~~~~~~a-----~~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~~~~~~~ 221 (543)
T 3m6a_A 147 ESEIRGHRRTYVGAMPGRIIQGMKKA-----GKLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHYIEETFD 221 (543)
T ss_dssp -----------------CHHHHHHTT-----CSSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSSSCCCCB
T ss_pred hhhhhhHHHHHhccCchHHHHHHHHh-----hccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeecccCCeeec
Confidence 0011000 000 111223333322 123459999999999887 4588999997522
Q ss_pred -CCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHH-----HHc-----CCCCCHHHHHHHHHh--cCCCH
Q 036794 553 -RRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIA-----SKE-----GIEIDKDALKLIASR--SDGSL 619 (1152)
Q Consensus 553 -~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia-----kke-----Gl~Id~dALelLAe~--s~GDL 619 (1152)
.+++||++||.++.++++|++||.+|.|++|+.++...++..++ +.. ++.++++++..|+.. ++|++
T Consensus 222 ~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~v 301 (543)
T 3m6a_A 222 LSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGV 301 (543)
T ss_dssp CSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSS
T ss_pred ccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhch
Confidence 57899999999999999999999999999999999998887765 223 456899999998875 56899
Q ss_pred HHHHHHHHHHHHh-------C--C--CCCHHHHHHHHhcc
Q 036794 620 RDAEMTLEQLSLL-------G--Q--RISVPLVQELVGLI 648 (1152)
Q Consensus 620 R~Ain~LEkLsLl-------g--~--~IT~EdV~elVg~v 648 (1152)
|.+.+.++.++.. . + .||.+++.++++..
T Consensus 302 R~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 302 RSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred hHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 9999999886432 1 1 36777777777653
|
| >3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.61 E-value=7e-15 Score=165.47 Aligned_cols=217 Identities=12% Similarity=0.072 Sum_probs=139.4
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC-CC-CCCcc
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKP-CG-FCNSC 484 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep-cg-~c~~c 484 (1152)
.+.+-|.|.. -|.|.+..+..|...+.. +..+..+||+||||||||++++.+++++.........| +. ..-+|
T Consensus 11 ~l~~~~~~~~--~L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc 88 (318)
T 3te6_A 11 SIRESLQKRE--LLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDA 88 (318)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEET
T ss_pred hhhhccCCcc--ccCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEec
Confidence 3444555422 277877666666544433 34555789999999999999999999986432111111 11 11222
Q ss_pred ccccCCCc------cceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHh---hCCCCE
Q 036794 485 ISHDRGKS------RNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVD---RAPRRV 555 (1152)
Q Consensus 485 ~~i~~g~~------~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLE---epp~~V 555 (1152)
..+..... ..+...........+.+..+++.+.. ......||||||+|.|. .++.|+.+++ ....++
T Consensus 89 ~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~--~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~~~~s~~ 164 (318)
T 3te6_A 89 LELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPK--AKKRKTLILIQNPENLL--SEKILQYFEKWISSKNSKL 164 (318)
T ss_dssp TCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCG--GGSCEEEEEEECCSSSC--CTHHHHHHHHHHHCSSCCE
T ss_pred cccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhh--ccCCceEEEEecHHHhh--cchHHHHHHhcccccCCcE
Confidence 22211000 00000000011223455555555310 12445799999999998 5667777765 345689
Q ss_pred EEEEEcCCCCc----chHHHHccc--eEEEecCCChhHHHHHHHHHHHHcC-----------------------------
Q 036794 556 VFILVSSSLDA----LPHIIISRC--QKFFFPKMKDADIIYTLQWIASKEG----------------------------- 600 (1152)
Q Consensus 556 ifILaTN~~dk----L~~aL~SR~--qvI~F~~p~~~EI~eiL~~iakkeG----------------------------- 600 (1152)
+||+++|..+. +++.+.+|+ .+|.|++++.+++.++|+.+++...
T Consensus 165 ~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (318)
T 3te6_A 165 SIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPD 244 (318)
T ss_dssp EEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------CT
T ss_pred EEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccccc
Confidence 99999998763 445567887 5799999999999999999987631
Q ss_pred ------CCCCHHHHHHHHHh---cCCCHHHHHHHHHHHHHh
Q 036794 601 ------IEIDKDALKLIASR---SDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 601 ------l~Id~dALelLAe~---s~GDLR~Ain~LEkLsLl 632 (1152)
+.++++|++++|+. ..||+|.|+++|+.++..
T Consensus 245 ~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~ 285 (318)
T 3te6_A 245 NVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEI 285 (318)
T ss_dssp TEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHH
T ss_pred cccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHH
Confidence 13799999999994 789999999999998755
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.61 E-value=3.5e-15 Score=177.13 Aligned_cols=208 Identities=20% Similarity=0.234 Sum_probs=145.6
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+.+|++|+|+++++..|.+.+.. .+++.++||+||||||||++|++||..+...+. + ..|
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i-------~-i~g 97 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI-------T-ASG 97 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEE-------E-EEG
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE-------E-Eeh
Confidence 556899999999999988877653 234668999999999999999999998753211 0 011
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR 550 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe 550 (1152)
..+.. .........++.+++.+. .....++||||+|.+.. ...+.|+..|+.
T Consensus 98 ~~~~~----------~~~g~~~~~v~~lfq~a~----~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg 163 (499)
T 2dhr_A 98 SDFVE----------MFVGVGAARVRDLFETAK----RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 163 (499)
T ss_dssp GGGTS----------SCTTHHHHHHHHHTTTSS----SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGG
T ss_pred hHHHH----------hhhhhHHHHHHHHHHHHH----hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcc
Confidence 11100 000011233444444332 12347999999988742 234566666664
Q ss_pred --CCCCEEEEEEcCCCCcchHHHHcc--ce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHH
Q 036794 551 --APRRVVFILVSSSLDALPHIIISR--CQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-RDAE 623 (1152)
Q Consensus 551 --pp~~VifILaTN~~dkL~~aL~SR--~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R~Ai 623 (1152)
....+++|++||.++.++++++++ +. .+.|+.|+.+++.++|+.+++ ++.+++++ +..|+..|+|+. +++.
T Consensus 164 ~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G~~gadL~ 241 (499)
T 2dhr_A 164 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLE 241 (499)
T ss_dssp CCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCSCCHHHHH
T ss_pred cccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCCCCHHHHH
Confidence 335678888899999899999884 43 689999999999998876654 45566554 888999999988 9999
Q ss_pred HHHHHHHHhC-----CCCCHHHHHHHHhc
Q 036794 624 MTLEQLSLLG-----QRISVPLVQELVGL 647 (1152)
Q Consensus 624 n~LEkLsLlg-----~~IT~EdV~elVg~ 647 (1152)
+.++.+++++ ..|+.+++.+++..
T Consensus 242 ~lv~~Aa~~A~~~~~~~It~~dl~~al~~ 270 (499)
T 2dhr_A 242 NLLNEAALLAAREGRRKITMKDLEEAADR 270 (499)
T ss_dssp HHHHHHHHHHTTTCCSSCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 9999987652 35999998887754
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.60 E-value=8.7e-16 Score=192.79 Aligned_cols=202 Identities=20% Similarity=0.275 Sum_probs=139.8
Q ss_pred cCcccCcHHHHHHHHHHHHhCCC--------CcEEEEEcCCCchHHHHHHHHHHHHcccCCCC-CCCCCCCCccccccCC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKV--------GLLYVFYGPHGTGKTSCARIFARALNCQSLEQ-PKPCGFCNSCISHDRG 490 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri--------~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-~epcg~c~~c~~i~~g 490 (1152)
+.+|+|++.+++.|..++..... ...+||+||+|||||++|++||+.+.+..... ...|..+..+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~--- 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV--- 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG---
T ss_pred hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH---
Confidence 46799999999999998876431 24799999999999999999999986532111 0112221111110
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC-----------CCEEEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP-----------RRVVFIL 559 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp-----------~~VifIL 559 (1152)
..++. .+.+.++.+....+...+...| +.||||||++.++.+.++.|+++|++.. .+++||+
T Consensus 634 --s~l~g-~~~~~~G~~~~g~l~~~~~~~~----~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~ 706 (854)
T 1qvr_A 634 --SRLIG-APPGYVGYEEGGQLTEAVRRRP----YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIIL 706 (854)
T ss_dssp --GGC---------------CHHHHHHHCS----SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEEE
T ss_pred --HHHcC-CCCCCcCccccchHHHHHHhCC----CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEeccCCeEEEE
Confidence 01110 1122334443344444444433 5899999999999999999999999742 4788999
Q ss_pred EcCCC--------------------------CcchHHHHccc-eEEEecCCChhHHHHHHHHHHHH-------c--CCCC
Q 036794 560 VSSSL--------------------------DALPHIIISRC-QKFFFPKMKDADIIYTLQWIASK-------E--GIEI 603 (1152)
Q Consensus 560 aTN~~--------------------------dkL~~aL~SR~-qvI~F~~p~~~EI~eiL~~iakk-------e--Gl~I 603 (1152)
+||.. ..+.+.|++|+ .++.|.+++.+++..++...+.+ . .+.+
T Consensus 707 tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~ 786 (854)
T 1qvr_A 707 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLEL 786 (854)
T ss_dssp ECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEE
T ss_pred ecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEE
Confidence 99862 23567899999 46889999999999888776652 1 3569
Q ss_pred CHHHHHHHHHh-c--CCCHHHHHHHHHHHHH
Q 036794 604 DKDALKLIASR-S--DGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 604 d~dALelLAe~-s--~GDLR~Ain~LEkLsL 631 (1152)
+++++++|+.+ | +||+|.+.+.++++..
T Consensus 787 ~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 787 TEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp CHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred CHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 99999999998 5 7999999999998643
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-15 Score=161.50 Aligned_cols=189 Identities=16% Similarity=0.206 Sum_probs=125.6
Q ss_pred cCcccCcHHHHHHHHH-------HHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 420 FRDLVGQNLVAQALSN-------AVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~-------aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
+..++|++..++.+.. .+.. ...++.+||+||+|||||++|+++|+.+++..... .|.....+
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i--------~~~~~~~g 103 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKI--------CSPDKMIG 103 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEE--------ECGGGCTT
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEE--------eCHHHhcC
Confidence 3567887665554443 3332 44557899999999999999999999976542111 11110000
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCC----------CHHHHHHHHHHHhh---CCCCEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTL----------SPDSWSAISKVVDR---APRRVVF 557 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~L----------s~eaqnaLLklLEe---pp~~Vif 557 (1152)
.........++.+++.+.. ....+|||||+|.| ....++.|+..++. .+..+++
T Consensus 104 ---------~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~i 170 (272)
T 1d2n_A 104 ---------FSETAKCQAMKKIFDDAYK----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 170 (272)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHT----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred ---------CchHHHHHHHHHHHHHHHh----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEE
Confidence 0000112345566665532 34689999999987 34455666666664 4457778
Q ss_pred EEEcCCCCcchH-HHHccc-eEEEecCCCh-hHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHHH
Q 036794 558 ILVSSSLDALPH-IIISRC-QKFFFPKMKD-ADIIYTLQWIASKEGIEIDKDALKLIASRSDG-----SLRDAEMTLEQL 629 (1152)
Q Consensus 558 ILaTN~~dkL~~-aL~SR~-qvI~F~~p~~-~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-----DLR~Ain~LEkL 629 (1152)
|++||.++.+++ .+.+|+ ..|.|++++. +++..++.. . ..++++++..|+..+.| |+|++++.++.+
T Consensus 171 i~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a 245 (272)
T 1d2n_A 171 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMS 245 (272)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHH
T ss_pred EEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCccccHHHHHHHHHHH
Confidence 888888887776 578884 5789988877 555554432 2 25789999999999877 999999999998
Q ss_pred HHhCC
Q 036794 630 SLLGQ 634 (1152)
Q Consensus 630 sLlg~ 634 (1152)
.....
T Consensus 246 ~~~~~ 250 (272)
T 1d2n_A 246 LQMDP 250 (272)
T ss_dssp TTSCG
T ss_pred hhhch
Confidence 65543
|
| >3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=9.6e-15 Score=173.04 Aligned_cols=197 Identities=15% Similarity=0.137 Sum_probs=144.7
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF 480 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~ 480 (1152)
+.+.+..|++|+|++.+++.|.+++.. ...+.++|||||||||||++|++||+.+++.+..
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~------- 268 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL------- 268 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE-------
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE-------
Confidence 456777899999999999999988765 3666789999999999999999999987644211
Q ss_pred CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHh
Q 036794 481 CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVD 549 (1152)
Q Consensus 481 c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLE 549 (1152)
.+|..+... ........++.+++.+... ...+|||||+|.+.. ..++.|+.+|+
T Consensus 269 -vn~~~l~~~----------~~g~~~~~~~~~f~~A~~~----~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld 333 (489)
T 3hu3_A 269 -INGPEIMSK----------LAGESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 333 (489)
T ss_dssp -EEHHHHHTS----------CTTHHHHHHHHHHHHHHHT----CSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHH
T ss_pred -EEchHhhhh----------hcchhHHHHHHHHHHHHhc----CCcEEEecchhhhccccccccchHHHHHHHHHHHHhh
Confidence 122222110 0011234566677766432 347999999976643 56789999999
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ...+++||++||.++.+++++.+ |+. .+.|+.|+.+++.++|+.+++...+.. +..+..++..+.| ..+++.
T Consensus 334 ~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-~~~l~~la~~t~g~s~~dL~ 412 (489)
T 3hu3_A 334 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-DVDLEQVANETHGHVGADLA 412 (489)
T ss_dssp HSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-TCCHHHHHHTCTTCCHHHHH
T ss_pred ccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-hhhHHHHHHHccCCcHHHHH
Confidence 6 45689999999999999999998 665 599999999999999998877655432 2246778888777 566777
Q ss_pred HHHHHHHHh
Q 036794 624 MTLEQLSLL 632 (1152)
Q Consensus 624 n~LEkLsLl 632 (1152)
+++..+++.
T Consensus 413 ~L~~~A~~~ 421 (489)
T 3hu3_A 413 ALCSEAALQ 421 (489)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776544
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-14 Score=153.33 Aligned_cols=209 Identities=21% Similarity=0.259 Sum_probs=142.9
Q ss_pred hhhCCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCC
Q 036794 413 QKYMPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFC 481 (1152)
Q Consensus 413 eKyRP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c 481 (1152)
..+.+.+|++++|++.++..+.+.... -..+.+++|+||+|||||+++++++..+..... .
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i-------~- 79 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI-------T- 79 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEE-------E-
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEE-------E-
Confidence 345566899999999988888766543 134567999999999999999999988652210 0
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHH
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKV 547 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLkl 547 (1152)
..+..+ .. .........+..+++.+.. ....++|+||+|.+.. ...+.|+..
T Consensus 80 ~~~~~~--------~~--~~~~~~~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~ 145 (254)
T 1ixz_A 80 ASGSDF--------VE--MFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVE 145 (254)
T ss_dssp EEHHHH--------HH--SCTTHHHHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHH
T ss_pred eeHHHH--------HH--HHhhHHHHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHH
Confidence 000000 00 0000112345566666532 2347999999986521 124566666
Q ss_pred HhhC--CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-H
Q 036794 548 VDRA--PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-R 620 (1152)
Q Consensus 548 LEep--p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R 620 (1152)
|+.. ...++++.+|+.++.+++++.+ |+. .+.|+.|+.+++.++++..++ ++.+++++ +..|+..+.|+. +
T Consensus 146 l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~ 223 (254)
T 1ixz_A 146 MDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGA 223 (254)
T ss_dssp HHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHH
T ss_pred HhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHHHHHHcCCCCHH
Confidence 6642 3456777888999999999988 554 589999999999999987664 45555554 888999999976 8
Q ss_pred HHHHHHHHHHHh----C-CCCCHHHHHHHH
Q 036794 621 DAEMTLEQLSLL----G-QRISVPLVQELV 645 (1152)
Q Consensus 621 ~Ain~LEkLsLl----g-~~IT~EdV~elV 645 (1152)
++.+.++.++.. + ..||.+++.+++
T Consensus 224 dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 224 DLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999999887654 2 359999988765
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.58 E-value=3.2e-15 Score=149.41 Aligned_cols=165 Identities=18% Similarity=0.208 Sum_probs=117.5
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..+|.++|+|..|++++|++..++.+..++..+. +..+||+||+|||||++|+.+++.+.+...... .
T Consensus 9 ~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~-~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~----~------- 76 (195)
T 1jbk_A 9 TIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRT-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEG----L------- 76 (195)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSS-SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGG----G-------
T ss_pred hHHHHHHHhhccccccccchHHHHHHHHHHhcCC-CCceEEECCCCCCHHHHHHHHHHHHHhCCCchh----h-------
Confidence 4578999999999999999999999999887754 345899999999999999999999876422110 0
Q ss_pred cCCCccceEEeCCC----CCCC----HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhC
Q 036794 488 DRGKSRNIKEVGPV----GNFD----FESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------PDSWSAISKVVDRA 551 (1152)
Q Consensus 488 ~~g~~~dviEIdaa----s~~~----vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------~eaqnaLLklLEep 551 (1152)
....++.++.. .... ...+..++..+... ..+.||||||+|.+. ...++.|..+++.
T Consensus 77 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~- 149 (195)
T 1jbk_A 77 ---KGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR- 149 (195)
T ss_dssp ---TTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS---TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT-
T ss_pred ---cCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhc---CCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc-
Confidence 00112222210 0011 12344455544322 445799999999985 3346777777765
Q ss_pred CCCEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHH
Q 036794 552 PRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 552 p~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
.++.+|++|+... .+++++.+||..+.|++|+.+++.++|
T Consensus 150 -~~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -GELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TSCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred -CCeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 4678888888765 577899999999999999999887654
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.55 E-value=1.4e-13 Score=150.06 Aligned_cols=206 Identities=21% Similarity=0.270 Sum_probs=140.0
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
.+.+|++|+|++.++..+.+.+.. -..+..++|+||+|||||+++++|+..+..... . ..|
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i-------~-~~~ 106 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFI-------T-ASG 106 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEE-------E-EEH
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEE-------E-ecH
Confidence 455799999999998888766543 134557999999999999999999988752210 0 000
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC-----------HH---HHHHHHHHHhh
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS-----------PD---SWSAISKVVDR 550 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls-----------~e---aqnaLLklLEe 550 (1152)
..+ .. .........+..+++.+... ...++|+||++.+. .. ..+.++..|+.
T Consensus 107 ~~~--------~~--~~~~~~~~~i~~~~~~~~~~----~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsg 172 (278)
T 1iy2_A 107 SDF--------VE--MFVGVGAARVRDLFETAKRH----APCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDG 172 (278)
T ss_dssp HHH--------HH--STTTHHHHHHHHHHHHHHTS----CSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTT
T ss_pred HHH--------HH--HHhhHHHHHHHHHHHHHHhc----CCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhC
Confidence 000 00 00001123455666665321 24799999998652 11 22344444443
Q ss_pred --CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHH-HHHHHHhcCCCH-HHHH
Q 036794 551 --APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDA-LKLIASRSDGSL-RDAE 623 (1152)
Q Consensus 551 --pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dA-LelLAe~s~GDL-R~Ai 623 (1152)
....++++++|+.++.+++++.+ |+. .+.|+.|+.+++.++|+.+++ ++.+++++ +..++..+.|+. +++.
T Consensus 173 g~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 173 FEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp CCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT--TSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred CCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc--cCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 23457778888999999999988 454 689999999999999987764 45555554 888999999977 8899
Q ss_pred HHHHHHHHh----C-CCCCHHHHHHHH
Q 036794 624 MTLEQLSLL----G-QRISVPLVQELV 645 (1152)
Q Consensus 624 n~LEkLsLl----g-~~IT~EdV~elV 645 (1152)
+.++.++.. + ..|+.+++.+++
T Consensus 251 ~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 251 NLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999887654 2 359999998765
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-15 Score=177.39 Aligned_cols=226 Identities=16% Similarity=0.212 Sum_probs=150.2
Q ss_pred hhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC----CC-------CCC
Q 036794 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP----KP-------CGF 480 (1152)
Q Consensus 412 ~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~----ep-------cg~ 480 (1152)
..+|+|+.|++++|++.+++.+..++..+. .+||+||+|||||++|++|+..+.+...... .+ |.+
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~ 108 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKT 108 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEE
T ss_pred cccccccccceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEE
Confidence 458999999999999999999999998874 5899999999999999999998765421000 00 111
Q ss_pred CCccccc------------------------cCCCc------------cceEEeCCCCCCCHHHHHHHHHHHhhCC----
Q 036794 481 CNSCISH------------------------DRGKS------------RNIKEVGPVGNFDFESILDLLDNMVTSR---- 520 (1152)
Q Consensus 481 c~~c~~i------------------------~~g~~------------~dviEIdaas~~~vdeIreLle~a~~~P---- 520 (1152)
|..|... ..... ..++... ... ..+++..+...+
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~---~~~---~~~L~G~~~~~~~~~g 182 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDAT---GAH---AGALLGDVRHDPFQSG 182 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECT---TCC---HHHHHCEECCCCC---
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcC---CCC---HHhcCceEEechhhcC
Confidence 1111000 00000 0011100 001 111221110000
Q ss_pred ---------------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhC---------------------CCCEEEEEEcCCC
Q 036794 521 ---------------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRA---------------------PRRVVFILVSSSL 564 (1152)
Q Consensus 521 ---------------~~a~~kVVIIDEID~Ls~eaqnaLLklLEep---------------------p~~VifILaTN~~ 564 (1152)
..+.++++||||++.|++..|+.|+++|++. +.++.||++||..
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~ 262 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD 262 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH
T ss_pred CccccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH
Confidence 0135579999999999999999999999951 2478899999865
Q ss_pred --CcchHHHHccce----EEEecCC---ChhHHHHHHHHHHHHc-----CCCCCHHHHHHHHHhc---CC-------CHH
Q 036794 565 --DALPHIIISRCQ----KFFFPKM---KDADIIYTLQWIASKE-----GIEIDKDALKLIASRS---DG-------SLR 620 (1152)
Q Consensus 565 --dkL~~aL~SR~q----vI~F~~p---~~~EI~eiL~~iakke-----Gl~Id~dALelLAe~s---~G-------DLR 620 (1152)
..++++|++||. .+.|+.. ....+..++..+++.. ...++++++..|++++ .| ++|
T Consensus 263 ~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R 342 (604)
T 3k1j_A 263 TVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLR 342 (604)
T ss_dssp HHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHH
T ss_pred HHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHH
Confidence 578999999995 5666543 3334555665555432 2579999999999873 66 699
Q ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHh
Q 036794 621 DAEMTLEQLSLL-----GQRISVPLVQELVG 646 (1152)
Q Consensus 621 ~Ain~LEkLsLl-----g~~IT~EdV~elVg 646 (1152)
++.++++.+..+ ...|+.++|.+++.
T Consensus 343 ~l~~llr~A~~~A~~~~~~~I~~edv~~A~~ 373 (604)
T 3k1j_A 343 DLGGIVRAAGDIAVKKGKKYVEREDVIEAVK 373 (604)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCcccccHHHHHHHHH
Confidence 999999987544 23699999998874
|
| >1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X* | Back alignment and structure |
|---|
Probab=99.55 E-value=2.6e-14 Score=176.77 Aligned_cols=223 Identities=16% Similarity=0.182 Sum_probs=156.1
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI-- 485 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~-- 485 (1152)
...|.++|+|..|++++|++..++.+.+.+..... ..+||+||||||||++|+++++.+.+...+.. . ..|.
T Consensus 173 ~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~-~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~----~-~~~~~~ 246 (758)
T 1r6b_X 173 TTNLNQLARVGGIDPLIGREKELERAIQVLCRRRK-NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEV----M-ADCTIY 246 (758)
T ss_dssp SCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEECCTTSSHHHHHHHHHHHHHHTCSCGG----G-TTCEEE
T ss_pred hHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCC-CCeEEEcCCCCCHHHHHHHHHHHHHhCCCChh----h-cCCEEE
Confidence 45789999999999999999999999998876644 45899999999999999999999976532210 0 0110
Q ss_pred cccCCCccceEEeCCCCCC-C-HHHHHHHHHHHhhCCCCCCceEEEEeCCCCC---------CHHHHHHHHHHHhhCCCC
Q 036794 486 SHDRGKSRNIKEVGPVGNF-D-FESILDLLDNMVTSRPPSQYRIFVFDDCDTL---------SPDSWSAISKVVDRAPRR 554 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~-~-vdeIreLle~a~~~P~~a~~kVVIIDEID~L---------s~eaqnaLLklLEepp~~ 554 (1152)
....+. + +.+.... . ...+..+++.+.. ....||||||+|.+ ..+..+.|..+++. ..
T Consensus 247 ~~~~~~---l--~~~~~~~g~~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~--~~ 315 (758)
T 1r6b_X 247 SLDIGS---L--LAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--GK 315 (758)
T ss_dssp ECCCC--------CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--CC
T ss_pred EEcHHH---H--hccccccchHHHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhC--CC
Confidence 111000 0 0001111 1 2346666666532 24589999999998 23345566666664 57
Q ss_pred EEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CH
Q 036794 555 VVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG------SL 619 (1152)
Q Consensus 555 VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G------DL 619 (1152)
+.+|++|+.++ .++++|.+||+.+.|++|+.+++.++|..++.. .++.++++++..++..+.| ..
T Consensus 316 ~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp 395 (758)
T 1r6b_X 316 IRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_dssp CEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTT
T ss_pred eEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCc
Confidence 78888887542 356789999999999999999999999887765 6888999999999887543 23
Q ss_pred HHHHHHHHHHHHh---------CCCCCHHHHHHHHhc
Q 036794 620 RDAEMTLEQLSLL---------GQRISVPLVQELVGL 647 (1152)
Q Consensus 620 R~Ain~LEkLsLl---------g~~IT~EdV~elVg~ 647 (1152)
..++..++.++.. ...|+.++|.+++..
T Consensus 396 ~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~ 432 (758)
T 1r6b_X 396 DKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 432 (758)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHH
Confidence 4677777765432 235888888877643
|
| >3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.54 E-value=2.3e-14 Score=177.53 Aligned_cols=198 Identities=16% Similarity=0.153 Sum_probs=142.6
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
...|.++|+|..|++++|++..++.|...+...... .+||+||||||||++|++||+.+.+...+.. . ..|.
T Consensus 167 ~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~-~vLL~G~pGtGKT~la~~la~~l~~~~~p~~----l-~~~~-- 238 (758)
T 3pxi_A 167 ARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKN-NPVLIGEPGVGKTAIAEGLAQQIINNEVPEI----L-RDKR-- 238 (758)
T ss_dssp CCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSC-EEEEESCTTTTTHHHHHHHHHHHHSSCSCTT----T-SSCC--
T ss_pred HHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCC-CeEEECCCCCCHHHHHHHHHHHHhcCCCChh----h-cCCe--
Confidence 457889999999999999999999999999876555 4899999999999999999999876433221 0 0010
Q ss_pred cCCCccceEEeCC-CC--CCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVGP-VG--NFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEIda-as--~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
++.++. .. ......++.++..+.. ..+.||||| ...++++.|+.+|+. ..+++|++||..
T Consensus 239 -------~~~~~~g~~~~G~~e~~l~~~~~~~~~----~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at~~~ 301 (758)
T 3pxi_A 239 -------VMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLAR--GELQCIGATTLD 301 (758)
T ss_dssp -------EECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTS--SSCEEEEECCTT
T ss_pred -------EEEecccccccchHHHHHHHHHHHHHh----cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCCChH
Confidence 111111 00 0011245667766643 345799999 455678889888885 678999999877
Q ss_pred C-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCC------CHHHHHHHHHHH
Q 036794 565 D-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK----EGIEIDKDALKLIASRSDG------SLRDAEMTLEQL 629 (1152)
Q Consensus 565 d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk----eGl~Id~dALelLAe~s~G------DLR~Ain~LEkL 629 (1152)
. .++++|.+||+.|.|+.|+.+++..+|+.++.. .++.++++++..++.++.+ ....++..++.+
T Consensus 302 ~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 302 EYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp TTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHHHHH
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHHHHH
Confidence 6 588899999999999999999999999977765 6888999999999887432 346778888776
Q ss_pred H
Q 036794 630 S 630 (1152)
Q Consensus 630 s 630 (1152)
+
T Consensus 382 ~ 382 (758)
T 3pxi_A 382 G 382 (758)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=99.54 E-value=5e-15 Score=167.76 Aligned_cols=191 Identities=23% Similarity=0.277 Sum_probs=128.2
Q ss_pred cccCcHHHHHHHHHHHHh--------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 422 DLVGQNLVAQALSNAVMR--------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~--------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
.|+||+.+++.|..++.. ...+..+||+||||||||++|++||+.++..... ..|..+
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~--------~~~~~l 87 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTM--------ADATTL 87 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE--------EEHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE--------echHHh
Confidence 379999999999988831 1134579999999999999999999998644211 111111
Q ss_pred cCCCccceEEeCCCCCCCH---HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHhh
Q 036794 488 DRGKSRNIKEVGPVGNFDF---ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------------SWSAISKVVDR 550 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~v---deIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------------aqnaLLklLEe 550 (1152)
.. ...++. ..+..++.........+.+.||||||+|.+... .++.|+++|+.
T Consensus 88 ~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg 156 (363)
T 3hws_A 88 TE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEG 156 (363)
T ss_dssp TT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHC
T ss_pred cc-----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcC
Confidence 10 001111 223334333211101134579999999988766 89999999993
Q ss_pred ---------------------CCCCEEEEEEcCCC----------Cc---------------------------------
Q 036794 551 ---------------------APRRVVFILVSSSL----------DA--------------------------------- 566 (1152)
Q Consensus 551 ---------------------pp~~VifILaTN~~----------dk--------------------------------- 566 (1152)
...+++||++++.. .+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~ 236 (363)
T 3hws_A 157 TVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIK 236 (363)
T ss_dssp C----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHH
T ss_pred ceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHH
Confidence 12345566666532 11
Q ss_pred --chHHHHccceE-EEecCCChhHHHHHHHH----HH-------HHcC--CCCCHHHHHHHHHh---cCCCHHHHHHHHH
Q 036794 567 --LPHIIISRCQK-FFFPKMKDADIIYTLQW----IA-------SKEG--IEIDKDALKLIASR---SDGSLRDAEMTLE 627 (1152)
Q Consensus 567 --L~~aL~SR~qv-I~F~~p~~~EI~eiL~~----ia-------kkeG--l~Id~dALelLAe~---s~GDLR~Ain~LE 627 (1152)
+.+.|++|+.. +.|.+++.+++.+++.. ++ ...+ +.+++++++.|+.+ ++++.|.+.|.++
T Consensus 237 ~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie 316 (363)
T 3hws_A 237 FGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVE 316 (363)
T ss_dssp HTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHH
T ss_pred cCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHH
Confidence 67889999996 56999999988777764 22 2223 45899999999964 7889999999999
Q ss_pred HHHH
Q 036794 628 QLSL 631 (1152)
Q Consensus 628 kLsL 631 (1152)
++..
T Consensus 317 ~~~~ 320 (363)
T 3hws_A 317 AALL 320 (363)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9753
|
| >1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.3e-14 Score=180.00 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=143.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|+++|+|..|++++|++..+..+...+..+... .+||+||||||||++|+++|+.+.+...+...
T Consensus 156 ~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~-~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l---------- 224 (854)
T 1qvr_A 156 YGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKN-NPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL---------- 224 (854)
T ss_dssp HEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCC-CCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS----------
T ss_pred HHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCC-ceEEEcCCCCCHHHHHHHHHHHHhcCCCchhh----------
Confidence 3568899999999999999999999999998876554 47899999999999999999998654322110
Q ss_pred ccCCCccceEEeCCCC------C--CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhh
Q 036794 487 HDRGKSRNIKEVGPVG------N--FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------PDSWSAISKVVDR 550 (1152)
Q Consensus 487 i~~g~~~dviEIdaas------~--~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--------~eaqnaLLklLEe 550 (1152)
. ...++.++... . .....+..++..+... ....||||||+|.+. .++.+.|..+++.
T Consensus 225 --~--~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~ 297 (854)
T 1qvr_A 225 --K--GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR 297 (854)
T ss_dssp --T--TCEEEEECC-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC-------------------HHHHHT
T ss_pred --c--CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC
Confidence 0 01122222111 0 1123466667666432 345799999999986 4556778888876
Q ss_pred CCCCEEEEEEcCCCC----cchHHHHccceEEEecCCChhHHHHHHHHHHH----HcCCCCCHHHHHHHHHhcCC-----
Q 036794 551 APRRVVFILVSSSLD----ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS----KEGIEIDKDALKLIASRSDG----- 617 (1152)
Q Consensus 551 pp~~VifILaTN~~d----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak----keGl~Id~dALelLAe~s~G----- 617 (1152)
..+.+|++|+... .++++|.+||+.|.|++|+.+++..+|+.++. ..++.++++++..++..+.|
T Consensus 298 --~~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~ 375 (854)
T 1qvr_A 298 --GELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITER 375 (854)
T ss_dssp --TCCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSS
T ss_pred --CCeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccc
Confidence 5677888888653 25778999999999999999999999987765 35889999999999988543
Q ss_pred -CHHHHHHHHHHHHHh
Q 036794 618 -SLRDAEMTLEQLSLL 632 (1152)
Q Consensus 618 -DLR~Ain~LEkLsLl 632 (1152)
-...++..++.++..
T Consensus 376 ~lp~kai~lldea~a~ 391 (854)
T 1qvr_A 376 RLPDKAIDLIDEAAAR 391 (854)
T ss_dssp CTHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHH
Confidence 267788888887543
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-14 Score=145.03 Aligned_cols=158 Identities=14% Similarity=0.161 Sum_probs=111.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
...+|.++|+|..|++++|++..+..+..++..+.. ..+||+||+|||||++|+.+++.+.+...+.. .
T Consensus 8 ~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~----~------ 76 (187)
T 2p65_A 8 YSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTK-NNPILLGDPGVGKTAIVEGLAIKIVQGDVPDS----L------ 76 (187)
T ss_dssp TEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEESCGGGCHHHHHHHHHHHHHTTCSCTT----T------
T ss_pred HHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCC-CceEEECCCCCCHHHHHHHHHHHHHhcCCcch----h------
Confidence 356889999999999999999999999998877544 45799999999999999999999865321110 0
Q ss_pred ccCCCccceEEeCCC------CC--CCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHh
Q 036794 487 HDRGKSRNIKEVGPV------GN--FDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVD 549 (1152)
Q Consensus 487 i~~g~~~dviEIdaa------s~--~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLE 549 (1152)
....++.++.. .. .....+..++..+... ..+.+|||||+|.+. .+.++.|..+++
T Consensus 77 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~ 149 (187)
T 2p65_A 77 ----KGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA---EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA 149 (187)
T ss_dssp ----TTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT---TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH
T ss_pred ----cCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc---CCceEEEEeCHHHhcccccccccchHHHHHHHHHHh
Confidence 00112222210 00 0112344455554332 345799999999986 456777878877
Q ss_pred hCCCCEEEEEEcCCCC-----cchHHHHccceEEEecCCC
Q 036794 550 RAPRRVVFILVSSSLD-----ALPHIIISRCQKFFFPKMK 584 (1152)
Q Consensus 550 epp~~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~ 584 (1152)
. ..++||++++.+. .+++++.+||..+.|++|+
T Consensus 150 ~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 150 R--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp T--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred c--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 6 5678888888654 4788999999999988774
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=8.2e-14 Score=173.07 Aligned_cols=190 Identities=16% Similarity=0.158 Sum_probs=136.4
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|+||.|.+.+++.|++.+.. ...+.++|||||||||||++|+++|+++++.... ..|
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~--------v~~ 271 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFL--------ING 271 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE--------EEH
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE--------EEh
Confidence 35799999999999999887753 2456799999999999999999999988765211 011
Q ss_pred ccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHHHhhC--
Q 036794 485 ISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKVVDRA-- 551 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLklLEep-- 551 (1152)
..+. ..........++.+++.+.. ..+.||||||+|.+.. ...+.|+..|+..
T Consensus 272 ~~l~----------sk~~gese~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~ 337 (806)
T 3cf2_A 272 PEIM----------SKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ 337 (806)
T ss_dssp HHHH----------SSCTTHHHHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG
T ss_pred HHhh----------cccchHHHHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc
Confidence 1110 11111224557788887753 3458999999999843 2456777777763
Q ss_pred CCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHH-HHHHHHHhcCC-CHHHHHHHH
Q 036794 552 PRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKD-ALKLIASRSDG-SLRDAEMTL 626 (1152)
Q Consensus 552 p~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~d-ALelLAe~s~G-DLR~Ain~L 626 (1152)
..++++|++||.++.++++|++ |+. .|.|+.|+..++.++|+.+++... +.++ .+..|+..+.| ...++.+++
T Consensus 338 ~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~--~~~dvdl~~lA~~T~GfsgaDL~~Lv 415 (806)
T 3cf2_A 338 RAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMK--LADDVDLEQVANETHGHVGADLAALC 415 (806)
T ss_dssp GGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSE--ECTTCCHHHHHHHCCSCCHHHHHHHH
T ss_pred cCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCC--CCcccCHHHHHHhcCCCCHHHHHHHH
Confidence 3579999999999999999998 777 599999999999999987765432 2222 37778888776 556666666
Q ss_pred HHHH
Q 036794 627 EQLS 630 (1152)
Q Consensus 627 EkLs 630 (1152)
..++
T Consensus 416 ~eA~ 419 (806)
T 3cf2_A 416 SEAA 419 (806)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
|
| >1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.5e-13 Score=158.03 Aligned_cols=213 Identities=15% Similarity=0.151 Sum_probs=137.7
Q ss_pred cCcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCC-ccceEE
Q 036794 420 FRDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGK-SRNIKE 497 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~-~~dviE 497 (1152)
|..++|++..++.+...+.. ......+||+|++|||||++|++++....... .|+. ..+|..+.... ...++.
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~----~~fv-~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSK----EPFV-ALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTT----SCEE-EEETTTSCHHHHHHHHHC
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCC----CCeE-EEecCCCCHHHHHHHhcC
Confidence 67899998888888776655 33444589999999999999999998754321 1111 11222211000 000000
Q ss_pred eCCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC-
Q 036794 498 VGPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL- 564 (1152)
Q Consensus 498 Idaas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~- 564 (1152)
.......+. .....+++. +.++++||||++.|+.+.|..|+++|++. +.++++|++||..
T Consensus 211 ~~~g~~tga~~~~~g~~~~-------a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l 283 (387)
T 1ny5_A 211 YEKGAFTGAVSSKEGFFEL-------ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNI 283 (387)
T ss_dssp BCTTSSTTCCSCBCCHHHH-------TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCH
T ss_pred CCCCCCCCcccccCCceee-------CCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCH
Confidence 000000000 000012222 45689999999999999999999999972 2578899999853
Q ss_pred ------CcchHHHHccceE--EEecCCCh--hHHHHHHHH----HHHHcCC---CCCHHHHHHHHHh-cCCCHHHHHHHH
Q 036794 565 ------DALPHIIISRCQK--FFFPKMKD--ADIIYTLQW----IASKEGI---EIDKDALKLIASR-SDGSLRDAEMTL 626 (1152)
Q Consensus 565 ------dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~----iakkeGl---~Id~dALelLAe~-s~GDLR~Ain~L 626 (1152)
..+.+.|..|+.. +.++++.. +++..++.. .+.+.+. .+++++++.|..+ |+||+|++.|.+
T Consensus 284 ~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNvreL~~~i 363 (387)
T 1ny5_A 284 KELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNVRELKNVI 363 (387)
T ss_dssp HHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHHHHHHHHH
T ss_pred HHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHHHHHHHHH
Confidence 2467778888864 55566543 455544444 3444443 4899999999988 999999999999
Q ss_pred HHHHHhC--CCCCHHHHHHH
Q 036794 627 EQLSLLG--QRISVPLVQEL 644 (1152)
Q Consensus 627 EkLsLlg--~~IT~EdV~el 644 (1152)
++++... ..|+.+++...
T Consensus 364 ~~~~~~~~~~~i~~~~l~~~ 383 (387)
T 1ny5_A 364 ERAVLFSEGKFIDRGELSCL 383 (387)
T ss_dssp HHHHHHCCSSEECHHHHHHH
T ss_pred HHHHHhCCCCcCcHHHCcHh
Confidence 9988763 35888887543
|
| >3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=8.6e-14 Score=172.89 Aligned_cols=177 Identities=19% Similarity=0.260 Sum_probs=114.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
.+|+++.|.+++++.|.+++.. -..+..+|||||||||||++|+++|.+++..+....
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~---------- 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIK---------- 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC----------
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEec----------
Confidence 4789999999999999987753 133457999999999999999999999876532110
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe- 550 (1152)
..++ +..........++++|+.+... .+.||||||+|.+.. ...+.||..|+.
T Consensus 544 ------~~~l--~s~~vGese~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~ 611 (806)
T 3cf2_A 544 ------GPEL--LTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGM 611 (806)
T ss_dssp ------HHHH--HTTTCSSCHHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CHHHHHHHHHHHSS
T ss_pred ------cchh--hccccchHHHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCC
Confidence 0000 1111223356789999988643 348999999998842 135788888886
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
...++++|++||.++.|++++++ |+. .|.|+.|+.+++.++++.++++..+. ++-.++.|++.++|
T Consensus 612 ~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g 681 (806)
T 3cf2_A 612 STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNG 681 (806)
T ss_dssp CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC------------
T ss_pred CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCC
Confidence 34578999999999999999998 887 58999999999999888776554332 11235666666544
|
| >1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A* | Back alignment and structure |
|---|
Probab=99.43 E-value=3.3e-13 Score=152.96 Aligned_cols=229 Identities=21% Similarity=0.280 Sum_probs=145.9
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHH-Hh---C--CCCcEEEE--EcCCCchHHHHHHHHHHHHcccCC--CCCCCCC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAV-MR---R--KVGLLYVF--YGPHGTGKTSCARIFARALNCQSL--EQPKPCG 479 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL-~~---g--ri~~~yLL--~GPpGTGKTtlARaLAkeL~~~~~--e~~epcg 479 (1152)
++..+|.| ++++|.+..++.|..++ .. + ..+..++| +||+|+|||++++.+++.+..... ....++
T Consensus 14 ~~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~- 89 (412)
T 1w5s_A 14 VFDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQ- 89 (412)
T ss_dssp GGSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEE-
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeE-
Confidence 44456665 67899999888888877 43 3 45567889 999999999999999998754210 000000
Q ss_pred CCCccccccCCCccceE-----EeC---CCCCCCHHHHHHHH-HHHhhCCCCCCceEEEEeCCCCCCH------HHHHHH
Q 036794 480 FCNSCISHDRGKSRNIK-----EVG---PVGNFDFESILDLL-DNMVTSRPPSQYRIFVFDDCDTLSP------DSWSAI 544 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dvi-----EId---aas~~~vdeIreLl-e~a~~~P~~a~~kVVIIDEID~Ls~------eaqnaL 544 (1152)
....|.... ....+. .++ +........+...+ +.+.. .+.+.||||||+|.+.. +.+..|
T Consensus 90 ~~~~~~~~~--~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~llvlDe~~~l~~~~~~~~~~l~~l 164 (412)
T 1w5s_A 90 AYVNAFNAP--NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYV---ENHYLLVILDEFQSMLSSPRIAAEDLYTL 164 (412)
T ss_dssp EEEEGGGCC--SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHH---HTCEEEEEEESTHHHHSCTTSCHHHHHHH
T ss_pred EEEECCCCC--CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHh---cCCeEEEEEeCHHHHhhccCcchHHHHHH
Confidence 001111100 000000 000 00111223322222 22211 13457999999999753 566677
Q ss_pred HHHHhhCC-----CCEEEEEEcCCCC---cch---HHHHccce-EEEecCCChhHHHHHHHHHHHHcC--CCCCHHHHHH
Q 036794 545 SKVVDRAP-----RRVVFILVSSSLD---ALP---HIIISRCQ-KFFFPKMKDADIIYTLQWIASKEG--IEIDKDALKL 610 (1152)
Q Consensus 545 LklLEepp-----~~VifILaTN~~d---kL~---~aL~SR~q-vI~F~~p~~~EI~eiL~~iakkeG--l~Id~dALel 610 (1152)
++.+++.+ .++.||++|+.++ .+. +.+.+++. .+.|++++.+++.+++...+...+ ..++++++..
T Consensus 165 ~~~~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~ 244 (412)
T 1w5s_A 165 LRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLEL 244 (412)
T ss_dssp HTHHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHH
T ss_pred HHHHHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHH
Confidence 78887654 6788998987665 233 45556643 499999999999999988776533 3589999999
Q ss_pred HHHhcC------CCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 611 IASRSD------GSLRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 611 LAe~s~------GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
++..++ |+++.+.++++.+... ...|+.+++..++..
T Consensus 245 i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 245 ISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp HHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 999999 9999999999876433 235888888766543
|
| >3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A | Back alignment and structure |
|---|
Probab=99.42 E-value=3.7e-13 Score=153.93 Aligned_cols=200 Identities=14% Similarity=0.200 Sum_probs=131.4
Q ss_pred CcccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCc-cceEEe
Q 036794 421 RDLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKS-RNIKEV 498 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~-~dviEI 498 (1152)
.+++|++..+..+...+.. ......+||+|++||||+.+|++++........ ....+|..+..... ..++.-
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~------fv~vnc~~~~~~~~~~~lfg~ 202 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRKGA------FVDLNCASIPQELAESELFGH 202 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSC------EEEEESSSSCTTTHHHHHHEE
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccccCC------cEEEEcccCChHHHHHHhcCc
Confidence 4688988877777665543 233345899999999999999999987653311 11223333221110 001000
Q ss_pred CCCCCCCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------CCCEEEEEEcCCC--
Q 036794 499 GPVGNFDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-----------PRRVVFILVSSSL-- 564 (1152)
Q Consensus 499 daas~~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-----------p~~VifILaTN~~-- 564 (1152)
......+. ..-...++. +.+++||||||+.|+...|..|+++|++. +.++++|++||..
T Consensus 203 ~~g~~tga~~~~~g~~~~-------a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~ 275 (368)
T 3dzd_A 203 EKGAFTGALTRKKGKLEL-------ADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLE 275 (368)
T ss_dssp CSCSSSSCCCCEECHHHH-------TTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHH
T ss_pred cccccCCcccccCChHhh-------cCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHH
Confidence 00000000 000012222 35579999999999999999999999972 2478899999853
Q ss_pred -----CcchHHHHccceE--EEecCCCh--hHHHHHHHHHH----HHcC---CCCCHHHHHHHHHh-cCCCHHHHHHHHH
Q 036794 565 -----DALPHIIISRCQK--FFFPKMKD--ADIIYTLQWIA----SKEG---IEIDKDALKLIASR-SDGSLRDAEMTLE 627 (1152)
Q Consensus 565 -----dkL~~aL~SR~qv--I~F~~p~~--~EI~eiL~~ia----kkeG---l~Id~dALelLAe~-s~GDLR~Ain~LE 627 (1152)
..+.+.|.+|+.. |.++|+.+ +++..++..++ ...+ ..++++|++.|..+ |+||+|++.|.++
T Consensus 276 ~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL~n~i~ 355 (368)
T 3dzd_A 276 EEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVRELKNLIE 355 (368)
T ss_dssp HHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHHHHHHH
Confidence 2466789999885 56777766 56666555444 3334 45999999999998 8999999999999
Q ss_pred HHHHhC
Q 036794 628 QLSLLG 633 (1152)
Q Consensus 628 kLsLlg 633 (1152)
+++...
T Consensus 356 ~~~~~~ 361 (368)
T 3dzd_A 356 RAVILC 361 (368)
T ss_dssp HHHHTC
T ss_pred HHHHhC
Confidence 998763
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.40 E-value=8.2e-12 Score=137.22 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=130.3
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSC 484 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c 484 (1152)
..+|+||.|.+.+++.|.+.+.. -..+.++||+||+|||||++++++|..++..
T Consensus 6 ~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~-------------- 71 (274)
T 2x8a_A 6 NVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLN-------------- 71 (274)
T ss_dssp ------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCE--------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCC--------------
Confidence 35799999999999998876521 2445679999999999999999999986542
Q ss_pred ccccCCCccceEEeCCCCC----C--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-----------HHHHHHHHH
Q 036794 485 ISHDRGKSRNIKEVGPVGN----F--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-----------DSWSAISKV 547 (1152)
Q Consensus 485 ~~i~~g~~~dviEIdaas~----~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-----------eaqnaLLkl 547 (1152)
++.++.... . ....++.+++.+... ...++|+||++.+.. ...+.++..
T Consensus 72 ----------~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~----~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~ 137 (274)
T 2x8a_A 72 ----------FISVKGPELLNMYVGESERAVRQVFQRAKNS----APCVIFFDEVDALCPRRSDRETGASVRVVNQLLTE 137 (274)
T ss_dssp ----------EEEEETTTTCSSTTHHHHHHHHHHHHHHHHT----CSEEEEEETCTTTCC---------CTTHHHHHHHH
T ss_pred ----------EEEEEcHHHHhhhhhHHHHHHHHHHHHHHhc----CCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHh
Confidence 111211110 1 123456666665322 237999999998632 234566666
Q ss_pred Hhh--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHc-CCCCCHH-HHHHHHHhc--CC-
Q 036794 548 VDR--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKE-GIEIDKD-ALKLIASRS--DG- 617 (1152)
Q Consensus 548 LEe--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakke-Gl~Id~d-ALelLAe~s--~G- 617 (1152)
|+. ....++++++||.++.+++++++ |+. .|.|+.|+..++.++++.+++.. ...++.+ .+..|+..+ .|
T Consensus 138 Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 217 (274)
T 2x8a_A 138 MDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCY 217 (274)
T ss_dssp HHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSC
T ss_pred hhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCc
Confidence 664 33467888889999999999988 777 58899999999999998877542 2223222 356666542 23
Q ss_pred CHHHHHHHHHHHHHhC----------------CCCCHHHHHHHHhcc
Q 036794 618 SLRDAEMTLEQLSLLG----------------QRISVPLVQELVGLI 648 (1152)
Q Consensus 618 DLR~Ain~LEkLsLlg----------------~~IT~EdV~elVg~v 648 (1152)
...++.+++..+++.+ ..|+.+|+.+++..+
T Consensus 218 sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 218 TGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 5555655555544321 136777777766544
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.1e-12 Score=140.53 Aligned_cols=156 Identities=17% Similarity=0.191 Sum_probs=100.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
+.+..+|||||||||||++|+++|++++...... .|..+.. .........+++++..+....
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v--------~~~~l~~----------~~~g~~~~~i~~~f~~a~~~~ 95 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGINPIMM--------SAGELES----------GNAGEPAKLIRQRYREAAEII 95 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEE--------EHHHHHC----------C---HHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEE--------eHHHhhh----------ccCchhHHHHHHHHHHHHHHH
Confidence 4556899999999999999999999996542111 1111100 000112334566666652111
Q ss_pred CCCCceEEEEeCCCCCCH-------------HHHHHHHHHHhh-------------CCCCEEEEEEcCCCCcchHHHHc-
Q 036794 521 PPSQYRIFVFDDCDTLSP-------------DSWSAISKVVDR-------------APRRVVFILVSSSLDALPHIIIS- 573 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~-------------eaqnaLLklLEe-------------pp~~VifILaTN~~dkL~~aL~S- 573 (1152)
....+.||||||+|.+.. ..++.|+.+|+. ...+++||++||.++.+++++++
T Consensus 96 ~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~ 175 (293)
T 3t15_A 96 RKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRD 175 (293)
T ss_dssp TTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHH
T ss_pred hcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCC
Confidence 124568999999998754 245889999873 23579999999999999999986
Q ss_pred -cceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC
Q 036794 574 -RCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG 617 (1152)
Q Consensus 574 -R~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G 617 (1152)
|+..+.+ .|+.+++.++++.++...+ ++.+.+..+...+.|
T Consensus 176 ~R~d~~i~-~P~~~~r~~Il~~~~~~~~--~~~~~l~~~~~~~~~ 217 (293)
T 3t15_A 176 GRMEKFYW-APTREDRIGVCTGIFRTDN--VPAEDVVKIVDNFPG 217 (293)
T ss_dssp HHEEEEEE-CCCHHHHHHHHHHHHGGGC--CCHHHHHHHHHHSCS
T ss_pred CCCceeEe-CcCHHHHHHHHHHhccCCC--CCHHHHHHHhCCCCc
Confidence 6665434 4689999999998887665 456666666665444
|
| >1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.6e-12 Score=150.31 Aligned_cols=125 Identities=20% Similarity=0.252 Sum_probs=94.2
Q ss_pred ceEEEEeCCCCCCHH------------HHHHHHHHHhh----------CCCCEEEEEEc----CCCCcchHHHHccceE-
Q 036794 525 YRIFVFDDCDTLSPD------------SWSAISKVVDR----------APRRVVFILVS----SSLDALPHIIISRCQK- 577 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~e------------aqnaLLklLEe----------pp~~VifILaT----N~~dkL~~aL~SR~qv- 577 (1152)
..++++||+|++... .|++||++||. ...++.||+++ .++..+.|.|+.|+.+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 468999999998532 67899999996 24678899887 2444466779999997
Q ss_pred EEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHh--------cCCCHHHHHHHHHHHHHh----
Q 036794 578 FFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASR--------SDGSLRDAEMTLEQLSLL---- 632 (1152)
Q Consensus 578 I~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~--------s~GDLR~Ain~LEkLsLl---- 632 (1152)
+.|++++.+++..++.. .+..+|+ .++++|+..|++. -..+.|.+.+.|+++...
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 89999999999998831 2222344 5899999999986 247899999998886422
Q ss_pred --C---C--CCCHHHHHHHHhccc
Q 036794 633 --G---Q--RISVPLVQELVGLIS 649 (1152)
Q Consensus 633 --g---~--~IT~EdV~elVg~v~ 649 (1152)
. + .||.+.|.+.++...
T Consensus 411 ~~~~~~~~~~i~~~~v~~~l~~~~ 434 (444)
T 1g41_A 411 ASDMNGQTVNIDAAYVADALGEVV 434 (444)
T ss_dssp GGGCTTCEEEECHHHHHHHHTTTT
T ss_pred ccccCCCeEEEeHHHHHHhcCccc
Confidence 1 1 388999988887544
|
| >3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.33 E-value=5.1e-11 Score=141.59 Aligned_cols=211 Identities=12% Similarity=0.108 Sum_probs=130.8
Q ss_pred CcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 421 RDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 421 ddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
..|+|++.++..+..++..+. .+||+||||||||++|++||+.+....... +..|.... ..+++..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~---~VLL~GpPGtGKT~LAraLa~~l~~~~~f~---~~~~~~~t------~~dL~G~-- 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNARAFE---YLMTRFST------PEEVFGP-- 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC---EEEEECCSSSSHHHHHHHGGGGBSSCCEEE---EECCTTCC------HHHHHCC--
T ss_pred hhhHHHHHHHHHHHHHHhcCC---eeEeecCchHHHHHHHHHHHHHHhhhhHHH---HHHHhcCC------HHHhcCc--
Confidence 468999999999988887763 589999999999999999998774311000 00111000 0000000
Q ss_pred CCCCCHHHH--HHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC----------CCCEEEEEEcCCCC---
Q 036794 501 VGNFDFESI--LDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA----------PRRVVFILVSSSLD--- 565 (1152)
Q Consensus 501 as~~~vdeI--reLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep----------p~~VifILaTN~~d--- 565 (1152)
...... ...+..+...+. ....|+||||++.+++..++.|+.+|++. .+..++|++||.+.
T Consensus 88 ---~~~~~~~~~g~~~~~~~g~l-~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe~~ 163 (500)
T 3nbx_X 88 ---LSIQALKDEGRYERLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPEAD 163 (500)
T ss_dssp ---BC----------CBCCTTSG-GGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCCTT
T ss_pred ---ccHHHHhhchhHHhhhccCC-CcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCCcc
Confidence 000000 000100000000 13469999999999999999999999861 11224578887543
Q ss_pred cchHHHHccceE-EEecCCCh-hHHHHHHHHHH-----------------------HHcCCCCCHHHHHHHHHhc-----
Q 036794 566 ALPHIIISRCQK-FFFPKMKD-ADIIYTLQWIA-----------------------SKEGIEIDKDALKLIASRS----- 615 (1152)
Q Consensus 566 kL~~aL~SR~qv-I~F~~p~~-~EI~eiL~~ia-----------------------kkeGl~Id~dALelLAe~s----- 615 (1152)
.+.+++++|+.. +.+++|+. ++...++.... ...++.++++++++++...
T Consensus 164 ~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~lr~ 243 (500)
T 3nbx_X 164 SSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQLDK 243 (500)
T ss_dssp CTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHHhhc
Confidence 255689999864 88888887 45555554322 2236789999999998775
Q ss_pred -----CCCHHHHHHHHHHH---HHhCC--CCCHHHHHHHHhccch
Q 036794 616 -----DGSLRDAEMTLEQL---SLLGQ--RISVPLVQELVGLISD 650 (1152)
Q Consensus 616 -----~GDLR~Ain~LEkL---sLlg~--~IT~EdV~elVg~v~e 650 (1152)
+.+.|.++..+..+ +.+.+ .|+.+||. ++..+..
T Consensus 244 ~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~ 287 (500)
T 3nbx_X 244 LPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLW 287 (500)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSC
T ss_pred CCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhh
Confidence 45888877776654 33333 48889888 5554443
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.31 E-value=2.4e-12 Score=127.67 Aligned_cols=133 Identities=12% Similarity=0.146 Sum_probs=92.5
Q ss_pred cccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 422 DLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
+++|++..++.+...+.. ......+||+||+|||||++|+++++...... .|+. ..|..+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~----~~~v--~~~~~~~~~---------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ----GEFV--YRELTPDNA---------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT----SCCE--EEECCTTTS----------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC----CCEE--EECCCCCcc----------
Confidence 689999999888887765 44455689999999999999999998653221 1111 222221111
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC-------cchHHHHc
Q 036794 501 VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD-------ALPHIIIS 573 (1152)
Q Consensus 501 as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d-------kL~~aL~S 573 (1152)
.....+++.+ ..++|||||+|.++.+.+..|+.+|+..+.++.+|++||..- .+.+.|..
T Consensus 66 ------~~~~~~~~~a-------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~ 132 (145)
T 3n70_A 66 ------PQLNDFIALA-------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
T ss_dssp ------SCHHHHHHHH-------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHH
T ss_pred ------hhhhcHHHHc-------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHH
Confidence 1233344443 347999999999999999999999988888899999998642 35667777
Q ss_pred cce--EEEecCC
Q 036794 574 RCQ--KFFFPKM 583 (1152)
Q Consensus 574 R~q--vI~F~~p 583 (1152)
|+. .|.++++
T Consensus 133 rl~~~~i~lPpL 144 (145)
T 3n70_A 133 CFAMTQIACLPL 144 (145)
T ss_dssp HHHHHEEECCCC
T ss_pred HhcCCEEeCCCC
Confidence 766 4666554
|
| >3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.4e-12 Score=157.93 Aligned_cols=211 Identities=17% Similarity=0.174 Sum_probs=133.5
Q ss_pred cCcccCcHHHHHHHHHHHHhCC----------CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 420 FRDLVGQNLVAQALSNAVMRRK----------VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gr----------i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
...++|++.++..|..++..+. ....+||+||||||||++|+++|+.+...... ++....|..+..
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~----~~~~~~~~~l~~ 369 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYT----TGKGSTAAGLTA 369 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECC----CTTCSTTTTSEE
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceec----CCCccccccccc
Confidence 3578999999888877766552 11258999999999999999999887543211 111112221111
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-------------CCCEE
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-------------PRRVV 556 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-------------p~~Vi 556 (1152)
....+. . .+..... ...+.. +.++|+||||++.++.+.+++|+.+|++. +.++.
T Consensus 370 ~~~~~~--~--~g~~~~~--~G~l~~-------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 370 AVVREK--G--TGEYYLE--AGALVL-------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp ECSSGG--G--TSSCSEE--ECHHHH-------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred eeeecc--c--ccccccc--CCeeEe-------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 000000 0 0000000 001111 24579999999999999999999999962 35677
Q ss_pred EEEEcCCCC-------------cchHHHHccce-EEEecCCChhHHHHHHHHHHHHc-----------------------
Q 036794 557 FILVSSSLD-------------ALPHIIISRCQ-KFFFPKMKDADIIYTLQWIASKE----------------------- 599 (1152)
Q Consensus 557 fILaTN~~d-------------kL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iakke----------------------- 599 (1152)
||++||... .++++|++||. .+.+..++..+...+++.++...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~ 516 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYIAYARK 516 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHH
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHH
Confidence 899998764 78899999995 45555544433333333333221
Q ss_pred --CCCCCHHHHHHHHHh---------------cCCCHHHHHHHHHHH---HHh--CCCCCHHHHHHHHhc
Q 036794 600 --GIEIDKDALKLIASR---------------SDGSLRDAEMTLEQL---SLL--GQRISVPLVQELVGL 647 (1152)
Q Consensus 600 --Gl~Id~dALelLAe~---------------s~GDLR~Ain~LEkL---sLl--g~~IT~EdV~elVg~ 647 (1152)
.-.+++++.+.|..+ ++++.|.+.+++.-+ +.+ ...|+.+||.+++..
T Consensus 517 ~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l 586 (595)
T 3f9v_A 517 YVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINI 586 (595)
T ss_dssp HHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHH
T ss_pred hCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHH
Confidence 225777788888876 578899888888765 333 345999999988754
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.20 E-value=1.2e-11 Score=122.54 Aligned_cols=129 Identities=17% Similarity=0.199 Sum_probs=87.4
Q ss_pred cccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 422 DLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
+++|++..++.+.+.+.. ......+||+||+|||||++|+++++... . ++.++.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~-~------------------------~~~~~~ 59 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT-P------------------------WVSPAR 59 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS-C------------------------EECCSS
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC-C------------------------eEEech
Confidence 689999998888887765 23444589999999999999999976543 1 111211
Q ss_pred CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-CCCEEEEEEcCCC-Cc----chHHHHcc
Q 036794 501 VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA-PRRVVFILVSSSL-DA----LPHIIISR 574 (1152)
Q Consensus 501 as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep-p~~VifILaTN~~-dk----L~~aL~SR 574 (1152)
.. ...+....+++. +..++|||||++.++.+.+..|+++|++. +.++.+|++||.. .. +.+.|..|
T Consensus 60 ~~-~~~~~~~~~~~~-------a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~~L~~r 131 (143)
T 3co5_A 60 VE-YLIDMPMELLQK-------AEGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEEKLAGL 131 (143)
T ss_dssp TT-HHHHCHHHHHHH-------TTTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHHHHHHH
T ss_pred hh-CChHhhhhHHHh-------CCCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccHHHHHH
Confidence 10 000112334443 23479999999999999999999999984 4678999999843 32 66778888
Q ss_pred ceE--EEecCC
Q 036794 575 CQK--FFFPKM 583 (1152)
Q Consensus 575 ~qv--I~F~~p 583 (1152)
+.. |.++++
T Consensus 132 l~~~~i~lPpL 142 (143)
T 3co5_A 132 FSESVVRIPPL 142 (143)
T ss_dssp SSSEEEEECCC
T ss_pred hcCcEEeCCCC
Confidence 653 555554
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=99.03 E-value=2e-08 Score=110.71 Aligned_cols=196 Identities=13% Similarity=0.106 Sum_probs=123.5
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc-------------
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI------------- 485 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~------------- 485 (1152)
.-..++|.+..++.|..++..+ ..++|+||+|+|||++++.+++.+++.. ..|..+.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ 79 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNERPGIL-------IDCRELYAERGHITREELIK 79 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHSSEEE-------EEHHHHHHTTTCBCHHHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHcCcEE-------EEeecccccccCCCHHHHHH
Confidence 3467899999999999999875 5799999999999999999998752110 0011000
Q ss_pred ccc--CCCc------cce-EE---eCCC-CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH-------HHHHHHH
Q 036794 486 SHD--RGKS------RNI-KE---VGPV-GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP-------DSWSAIS 545 (1152)
Q Consensus 486 ~i~--~g~~------~dv-iE---Idaa-s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~-------eaqnaLL 545 (1152)
.+. .... ..+ .. .... ....+..+.+.+...... .++.+|||||++.+.. +....|.
T Consensus 80 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~ 156 (350)
T 2qen_A 80 ELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEE---LGEFIVAFDEAQYLRFYGSRGGKELLALFA 156 (350)
T ss_dssp HHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHH---HSCEEEEEETGGGGGGBTTTTTHHHHHHHH
T ss_pred HHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhc---cCCEEEEEeCHHHHhccCccchhhHHHHHH
Confidence 000 0000 000 00 0000 012334443333332111 1247999999999764 3445555
Q ss_pred HHHhhCCCCEEEEEEcCCCCcchH---------HHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 036794 546 KVVDRAPRRVVFILVSSSLDALPH---------IIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRS 615 (1152)
Q Consensus 546 klLEepp~~VifILaTN~~dkL~~---------aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s 615 (1152)
.+++.. .++.||+++.....+.. .+..|. ..+.+.+++.++..+++...+...|..++++++..++..+
T Consensus 157 ~~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~t 235 (350)
T 2qen_A 157 YAYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELL 235 (350)
T ss_dssp HHHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHH
T ss_pred HHHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 555553 47888888765321111 133343 4799999999999999998888788889999999999999
Q ss_pred CCCHHHHHHHHHH
Q 036794 616 DGSLRDAEMTLEQ 628 (1152)
Q Consensus 616 ~GDLR~Ain~LEk 628 (1152)
+|+...+......
T Consensus 236 gG~P~~l~~~~~~ 248 (350)
T 2qen_A 236 DGIPGWLVVFGVE 248 (350)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHH
Confidence 9999876554443
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=5.9e-09 Score=105.99 Aligned_cols=121 Identities=19% Similarity=0.143 Sum_probs=79.5
Q ss_pred hhhCCCCcCcccC----cHHHHHHHHHHHHhCCC--CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 413 QKYMPRTFRDLVG----QNLVAQALSNAVMRRKV--GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 413 eKyRP~sFddLVG----Qe~v~q~Lk~aL~~gri--~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
++|++.+|+++++ +..+++.+...+..-.. +..++|+||+|+|||+++++++..+...... .+
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~---~~-------- 70 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGI---RG-------- 70 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCC---CC--------
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCC---eE--------
Confidence 5799999999986 45677777777765332 4579999999999999999999987522100 00
Q ss_pred ccCCCccceEEeCCCCCCCHHHHH-------------HHHHHHhhCCCCCCceEEEEeCCC--CCCHHHHHHHHHHHhhC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESIL-------------DLLDNMVTSRPPSQYRIFVFDDCD--TLSPDSWSAISKVVDRA 551 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIr-------------eLle~a~~~P~~a~~kVVIIDEID--~Ls~eaqnaLLklLEep 551 (1152)
..+ ...++. .++..+ .+..+|||||++ .+.......|..+++..
T Consensus 71 ---------~~~------~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~llilDE~~~~~~~~~~~~~l~~ll~~~ 129 (180)
T 3ec2_A 71 ---------YFF------DTKDLIFRLKHLMDEGKDTKFLKTV------LNSPVLVLDDLGSERLSDWQRELISYIITYR 129 (180)
T ss_dssp ---------CEE------EHHHHHHHHHHHHHHTCCSHHHHHH------HTCSEEEEETCSSSCCCHHHHHHHHHHHHHH
T ss_pred ---------EEE------EHHHHHHHHHHHhcCchHHHHHHHh------cCCCEEEEeCCCCCcCCHHHHHHHHHHHHHH
Confidence 001 111111 112222 245799999998 45666777787877663
Q ss_pred C-CCEEEEEEcCCCC
Q 036794 552 P-RRVVFILVSSSLD 565 (1152)
Q Consensus 552 p-~~VifILaTN~~d 565 (1152)
. ....+|++||.+.
T Consensus 130 ~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 130 YNNLKSTIITTNYSL 144 (180)
T ss_dssp HHTTCEEEEECCCCS
T ss_pred HHcCCCEEEEcCCCh
Confidence 2 4577888888654
|
| >2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.85 E-value=3.9e-08 Score=108.45 Aligned_cols=198 Identities=16% Similarity=0.140 Sum_probs=118.0
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC---CCCccccc--------
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG---FCNSCISH-------- 487 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg---~c~~c~~i-------- 487 (1152)
....++|.+..++.|.. +.. ..++|+||+|+|||++++.+++.+..........|. .......+
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l 85 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFLLELQKEI 85 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHHHHHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHHHHHHHHH
Confidence 34678999999999988 654 479999999999999999999886422100000000 00000000
Q ss_pred ------------cCCCccce------EEeCCC--CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH----HHHHH
Q 036794 488 ------------DRGKSRNI------KEVGPV--GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP----DSWSA 543 (1152)
Q Consensus 488 ------------~~g~~~dv------iEIdaa--s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~----eaqna 543 (1152)
.......+ ..++.. ....+.. +++.+..... ++.+|||||++.+.. +....
T Consensus 86 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~~l~~~~~--~~~vlvlDe~~~~~~~~~~~~~~~ 160 (357)
T 2fna_A 86 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFAN---LLESFEQASK--DNVIIVLDEAQELVKLRGVNLLPA 160 (357)
T ss_dssp HHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHH---HHHHHHHTCS--SCEEEEEETGGGGGGCTTCCCHHH
T ss_pred HHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHH---HHHHHHhcCC--CCeEEEEECHHHhhccCchhHHHH
Confidence 00000000 011100 0122333 4433332211 357899999999753 34445
Q ss_pred HHHHHhhCCCCEEEEEEcCCCCcchH---------HHHccc-eEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036794 544 ISKVVDRAPRRVVFILVSSSLDALPH---------IIISRC-QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIAS 613 (1152)
Q Consensus 544 LLklLEepp~~VifILaTN~~dkL~~---------aL~SR~-qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe 613 (1152)
|..+++.. .++.||+++.....+.. .+..|. ..+.+.+++.++..+++...+...+...++. ..++.
T Consensus 161 l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~--~~i~~ 237 (357)
T 2fna_A 161 LAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY--EVVYE 237 (357)
T ss_dssp HHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--HHHHH
T ss_pred HHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--HHHHH
Confidence 55555553 47888888875432221 133454 6899999999999999998877667766654 78889
Q ss_pred hcCCCHHHHHHHHHHH
Q 036794 614 RSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 614 ~s~GDLR~Ain~LEkL 629 (1152)
.++|+...+......+
T Consensus 238 ~t~G~P~~l~~~~~~~ 253 (357)
T 2fna_A 238 KIGGIPGWLTYFGFIY 253 (357)
T ss_dssp HHCSCHHHHHHHHHHH
T ss_pred HhCCCHHHHHHHHHHH
Confidence 9999998776555443
|
| >3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19} | Back alignment and structure |
|---|
Probab=98.70 E-value=1.8e-08 Score=118.28 Aligned_cols=171 Identities=12% Similarity=0.028 Sum_probs=106.7
Q ss_pred ccCcHHHHHHHHHHHHhCC----CCcEEEEEcCCCchHHHHHHHH-HHHHcccCCCCCCCCCCCCccccccCCCccceEE
Q 036794 423 LVGQNLVAQALSNAVMRRK----VGLLYVFYGPHGTGKTSCARIF-ARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKE 497 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gr----i~~~yLL~GPpGTGKTtlARaL-AkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviE 497 (1152)
|+||+.++..|.-++..|. ....+||.|+||| ||.+|+.+ ++.+..... .++.+..+..+... +.
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~f----t~g~~ss~~gLt~s----~r- 284 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVY----VDLRRTELTDLTAV----LK- 284 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEE----EEGGGCCHHHHSEE----EE-
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEE----ecCCCCCccCceEE----EE-
Confidence 8999999888887776652 1124899999999 99999999 765422100 00111111111100 00
Q ss_pred eCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---------CCCCEEEEEEcCCCC---
Q 036794 498 VGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---------APRRVVFILVSSSLD--- 565 (1152)
Q Consensus 498 Idaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---------pp~~VifILaTN~~d--- 565 (1152)
++.+ +... ...+. .+..+++||||++.++...+.+|+..||+ .+.++.||+++|-..
T Consensus 285 -~~tG-~~~~--~G~l~-------LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd 353 (506)
T 3f8t_A 285 -EDRG-WALR--AGAAV-------LADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWP 353 (506)
T ss_dssp -ESSS-EEEE--ECHHH-------HTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--C
T ss_pred -cCCC-cccC--CCeeE-------EcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccC
Confidence 1100 0000 00011 14568999999999999999999999997 356788888888543
Q ss_pred --------cchHHHHccceEEEe---------------cCCChhHHHHHHHHHH-HHcCCCCCHHHHHHHHHh
Q 036794 566 --------ALPHIIISRCQKFFF---------------PKMKDADIIYTLQWIA-SKEGIEIDKDALKLIASR 614 (1152)
Q Consensus 566 --------kL~~aL~SR~qvI~F---------------~~p~~~EI~eiL~~ia-kkeGl~Id~dALelLAe~ 614 (1152)
.|++++++|+..+.. +.++.+++.+++...- ......+++++.++|..+
T Consensus 354 ~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 354 SDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred CCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 789999999954221 1233445555554332 123677899998888765
|
| >1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A | Back alignment and structure |
|---|
Probab=98.69 E-value=4.4e-08 Score=107.77 Aligned_cols=138 Identities=15% Similarity=0.289 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 429 VAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 429 v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
+...|..++... ....++|||||||||||++|.+||+.+.... +... .. ..+..
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~G------------~vn~--~~----------~~f~l- 143 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYG------------CVNW--TN----------ENFPF- 143 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEE------------ECCT--TC----------SSCTT-
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcccc------------eeec--cc----------ccccc-
Confidence 344566666654 3345799999999999999999998743210 0000 00 00100
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------CC-----CCEEEEEEcCC-C---------
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------AP-----RRVVFILVSSS-L--------- 564 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------pp-----~~VifILaTN~-~--------- 564 (1152)
..+ ....+++.||+.+ ..++++.|..+++. .. ..+.||++||. +
T Consensus 144 ------~~~------~~k~i~l~Ee~~~-~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~ 210 (267)
T 1u0j_A 144 ------NDC------VDKMVIWWEEGKM-TAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST 210 (267)
T ss_dssp ------GGG------SSCSEEEECSCCE-ETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE
T ss_pred ------ccc------cccEEEEeccccc-hhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc
Confidence 000 2335666666654 45677778888872 12 45678888886 2
Q ss_pred -CcchHHHHccceEEEec--------CCChhHHHHHHHHHHHHcCCCCCH
Q 036794 565 -DALPHIIISRCQKFFFP--------KMKDADIIYTLQWIASKEGIEIDK 605 (1152)
Q Consensus 565 -dkL~~aL~SR~qvI~F~--------~p~~~EI~eiL~~iakkeGl~Id~ 605 (1152)
+...+.|.+||..|.|. +++.+++..++.+. +.+++++++
T Consensus 211 s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~-~~~~~~~~~ 259 (267)
T 1u0j_A 211 TFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA-KDHVVEVEH 259 (267)
T ss_dssp ECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH-HHTCCCCCC
T ss_pred chhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH-HHcCCCCcc
Confidence 24567799999999999 89999999999865 777766543
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=98.66 E-value=5.6e-08 Score=100.22 Aligned_cols=60 Identities=15% Similarity=0.089 Sum_probs=46.1
Q ss_pred chhhhhCCCCcCcccCcH----HHHHHHHHHHHhCCC---CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 410 NLTQKYMPRTFRDLVGQN----LVAQALSNAVMRRKV---GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe----~v~q~Lk~aL~~gri---~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..+|++.+|+++++.+ .+++.+..++..... +..++|+||+|||||++|+++++.+..
T Consensus 14 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp SSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 344577888999999743 466667777766432 257999999999999999999998864
|
| >3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=98.53 E-value=3.9e-07 Score=106.78 Aligned_cols=132 Identities=17% Similarity=0.228 Sum_probs=77.5
Q ss_pred cccccchhhhhCCCCcCccc-CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 405 NGRHQNLTQKYMPRTFRDLV-GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 405 ~~~~~~l~eKyRP~sFddLV-GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
+....+|..||+|.+|++|- +|..++..+...+..+.. .+||+|++|||||+++..+++.+.......
T Consensus 8 ~~~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~--~~li~G~aGTGKT~ll~~~~~~l~~~~~~~--------- 76 (459)
T 3upu_A 8 HHHSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH--HVTINGPAGTGATTLTKFIIEALISTGETG--------- 76 (459)
T ss_dssp -------------CCSSCCCHHHHHHHHHHHHHHHSSSC--EEEEECCTTSCHHHHHHHHHHHHHHTTCCC---------
T ss_pred CCccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC--EEEEEeCCCCCHHHHHHHHHHHHHhcCCce---------
Confidence 34467999999999999998 788999999888887653 699999999999999999999887542100
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHH-----------HHHHH------------hhCCCCCCceEEEEeCCCCCCHHH
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILD-----------LLDNM------------VTSRPPSQYRIFVFDDCDTLSPDS 540 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIre-----------Lle~a------------~~~P~~a~~kVVIIDEID~Ls~ea 540 (1152)
+..+.+ .+.....+++ ++... ...+....+.+|||||+++++...
T Consensus 77 -----------il~~a~-T~~Aa~~l~~~~~~~~~T~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~ 144 (459)
T 3upu_A 77 -----------IILAAP-THAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVSMYDRKL 144 (459)
T ss_dssp -----------EEEEES-SHHHHHHHHHHHSSCEEEHHHHHTEEEEECSSCEEEEECSCCCCSSCSEEEESCGGGCCHHH
T ss_pred -----------EEEecC-cHHHHHHHHhhhccchhhHHHHhccCcccccccchhcccccccccCCCEEEEECchhCCHHH
Confidence 111100 0000011111 11000 011222457899999999999998
Q ss_pred HHHHHHHHhhCCCCEEEEEEcC
Q 036794 541 WSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 541 qnaLLklLEepp~~VifILaTN 562 (1152)
+..|++.+. ....||++..
T Consensus 145 ~~~l~~~~~---~~~~~~~vGD 163 (459)
T 3upu_A 145 FKILLSTIP---PWCTIIGIGD 163 (459)
T ss_dssp HHHHHHHSC---TTCEEEEEEC
T ss_pred HHHHHHhcc---CCCEEEEECC
Confidence 888888875 3455555543
|
| >1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.46 E-value=1.9e-07 Score=99.20 Aligned_cols=121 Identities=19% Similarity=0.186 Sum_probs=74.2
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCH
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~v 506 (1152)
...+..|+.++..-...+++|||||||||||++|.++++.+....... .. ....+.
T Consensus 42 ~~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~f-------------an----------s~s~f~- 97 (212)
T 1tue_A 42 ITFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF-------------VN----------STSHFW- 97 (212)
T ss_dssp HHHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC-------------CC----------SSSCGG-
T ss_pred HHHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeE-------------Ee----------ccchhh-
Confidence 345677777776422235799999999999999999999985331100 00 000000
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH-HHHHHHHHhhCC-------------CCEEEEEEcCC---CCcchH
Q 036794 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS-WSAISKVVDRAP-------------RRVVFILVSSS---LDALPH 569 (1152)
Q Consensus 507 deIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp-------------~~VifILaTN~---~dkL~~ 569 (1152)
..+. .+.++++|||++...... ...+..+|+..+ ....+|++||. .+...+
T Consensus 98 -----------l~~l-~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~ 165 (212)
T 1tue_A 98 -----------LEPL-TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWP 165 (212)
T ss_dssp -----------GGGG-TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCH
T ss_pred -----------hccc-CCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchh
Confidence 0111 335799999998432121 234555555532 12468888885 234456
Q ss_pred HHHccceEEEecCC
Q 036794 570 IIISRCQKFFFPKM 583 (1152)
Q Consensus 570 aL~SR~qvI~F~~p 583 (1152)
.|.||+..+.|+.+
T Consensus 166 ~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 166 YLESRITVFEFPNA 179 (212)
T ss_dssp HHHTSCEEEECCSC
T ss_pred hhhhhEEEEEcCCC
Confidence 79999999999854
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.41 E-value=8.6e-07 Score=122.10 Aligned_cols=139 Identities=10% Similarity=0.109 Sum_probs=95.7
Q ss_pred HHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHH
Q 036794 434 SNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL 513 (1152)
Q Consensus 434 k~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl 513 (1152)
..++..+ +.+||+||||||||++|+.+...... ..+..+.-........+...+
T Consensus 1261 ~~~l~~~---~~vLL~GPpGtGKT~la~~~l~~~~~-----------------------~~~~~infsa~ts~~~~~~~i 1314 (2695)
T 4akg_A 1261 YDLLNSK---RGIILCGPPGSGKTMIMNNALRNSSL-----------------------YDVVGINFSKDTTTEHILSAL 1314 (2695)
T ss_dssp HHHHHHT---CEEEEECSTTSSHHHHHHHHHHSCSS-----------------------CEEEEEECCTTCCHHHHHHHH
T ss_pred HHHHHCC---CeEEEECCCCCCHHHHHHHHHhcCCC-----------------------CceEEEEeecCCCHHHHHHHH
Confidence 3444444 46999999999999999665443210 012233333344556666666
Q ss_pred HHHh----------hCCC-CCCceEEEEeCCCCCCHH------HHHHHHHHHhhCC------------CCEEEEEEcCCC
Q 036794 514 DNMV----------TSRP-PSQYRIFVFDDCDTLSPD------SWSAISKVVDRAP------------RRVVFILVSSSL 564 (1152)
Q Consensus 514 e~a~----------~~P~-~a~~kVVIIDEID~Ls~e------aqnaLLklLEepp------------~~VifILaTN~~ 564 (1152)
+... ..|. .+++.||||||+++...+ ..+.|.+++|... .++.||+|+|.+
T Consensus 1315 ~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp 1394 (2695)
T 4akg_A 1315 HRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPP 1394 (2695)
T ss_dssp HHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCT
T ss_pred HHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCC
Confidence 6531 1222 355679999999886433 5667777777511 358899999987
Q ss_pred C-----cchHHHHccceEEEecCCChhHHHHHHHHHHHH
Q 036794 565 D-----ALPHIIISRCQKFFFPKMKDADIIYTLQWIASK 598 (1152)
Q Consensus 565 d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakk 598 (1152)
. .+++++.+||.++.|+.|+.+++..++..++..
T Consensus 1395 ~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~ 1433 (2695)
T 4akg_A 1395 TDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKA 1433 (2695)
T ss_dssp TSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHH
T ss_pred ccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHH
Confidence 3 699999999999999999999999998887754
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=98.36 E-value=2.7e-07 Score=92.45 Aligned_cols=118 Identities=12% Similarity=0.143 Sum_probs=72.3
Q ss_pred CcCccc-C-cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceE
Q 036794 419 TFRDLV-G-QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIK 496 (1152)
Q Consensus 419 sFddLV-G-Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dvi 496 (1152)
+|++++ | +..++..|... .+..++|+||+|+|||+++++++..+.... . .+.
T Consensus 15 ~~~~f~~g~n~~~~~~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g--------~-------------~~~ 68 (149)
T 2kjq_A 15 SFDKFLGTENAELVYVLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALEAG--------K-------------NAA 68 (149)
T ss_dssp CCCCCCSCCTHHHHHHCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHTTT--------C-------------CEE
T ss_pred chhhcCcCccHHHHHHHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHhcC--------C-------------cEE
Confidence 455544 3 44555555444 345789999999999999999999875310 0 012
Q ss_pred EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCC--CCEEEEEEcCC-CC---cchHH
Q 036794 497 EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAP--RRVVFILVSSS-LD---ALPHI 570 (1152)
Q Consensus 497 EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp--~~VifILaTN~-~d---kL~~a 570 (1152)
.++....... .+ ..+..+|||||++.+....+..|+.+++... ...++|++++. +. .+ +.
T Consensus 69 ~~~~~~~~~~--------~~-----~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~-~~ 134 (149)
T 2kjq_A 69 YIDAASMPLT--------DA-----AFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIR-ED 134 (149)
T ss_dssp EEETTTSCCC--------GG-----GGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCC-HH
T ss_pred EEcHHHhhHH--------HH-----HhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcccc-HH
Confidence 2221111110 00 1234799999999998776778888776522 12246667764 33 34 78
Q ss_pred HHccce
Q 036794 571 IISRCQ 576 (1152)
Q Consensus 571 L~SR~q 576 (1152)
|.+|+.
T Consensus 135 L~SRl~ 140 (149)
T 2kjq_A 135 LRTRMA 140 (149)
T ss_dssp HHHHGG
T ss_pred HHHHHh
Confidence 999976
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=98.32 E-value=4.9e-07 Score=100.95 Aligned_cols=58 Identities=21% Similarity=0.191 Sum_probs=44.4
Q ss_pred hhhhhCCCCcCcccCc----HHHHHHHHHHHHhCC--CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 411 LTQKYMPRTFRDLVGQ----NLVAQALSNAVMRRK--VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQ----e~v~q~Lk~aL~~gr--i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+...|++.+|+++++. ..++..+..++.... ....++|+||+|||||++|+++++++.
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456677899999862 345666667777632 145799999999999999999999876
|
| >4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A | Back alignment and structure |
|---|
Probab=98.04 E-value=8.3e-05 Score=102.88 Aligned_cols=168 Identities=20% Similarity=0.236 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
....+|..++..+ .+.++.||+|||||++++.+|+.++... +.++-....+..
T Consensus 633 r~~~tl~~Al~~~---~~~~l~GpaGtGKTe~vk~LA~~lg~~~------------------------v~~nc~e~ld~~ 685 (2695)
T 4akg_A 633 IGFATLTDSLHQK---YGGCFFGPAGTGKTETVKAFGQNLGRVV------------------------VVFNCDDSFDYQ 685 (2695)
T ss_dssp HHHHHHHHHHHTT---CEEEEECCTTSCHHHHHHHHHHTTTCCC------------------------EEEETTSSCCHH
T ss_pred HHHHHHHHHHHhC---CCCcccCCCCCCcHHHHHHHHHHhCCcE------------------------EEEECCCCCChh
Confidence 4445566666554 3468999999999999999999988652 222222334556
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHH-------HHHhh-------------CCCCEEEEEEcC----C
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAIS-------KVVDR-------------APRRVVFILVSS----S 563 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLL-------klLEe-------------pp~~VifILaTN----~ 563 (1152)
.+..++..+... +..+++||++.+..+....|. ..+.+ ..+++.++++.| .
T Consensus 686 ~lg~~~~g~~~~-----Gaw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g 760 (2695)
T 4akg_A 686 VLSRLLVGITQI-----GAWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNG 760 (2695)
T ss_dssp HHHHHHHHHHHH-----TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSS
T ss_pred HhhHHHHHHHhc-----CCEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccC
Confidence 667777665433 368999999999999877663 33322 123444555555 2
Q ss_pred CCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------------cCCCHHHHHHHHHHHH
Q 036794 564 LDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR-------------SDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 564 ~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~-------------s~GDLR~Ain~LEkLs 630 (1152)
...||+.|+.||..+.+..|+.+.+.+++- ...|....+.....++.. .+-.+|.+...|..+.
T Consensus 761 ~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l---~s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 761 RSELPENLKKSFREFSMKSPQSGTIAEMIL---QIMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp SCCCCHHHHTTEEEEECCCCCHHHHHHHHH---HHHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred cccccHHHHhheEEEEeeCCCHHHHHHHHH---HhcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 336999999999999999999887777653 234554444433333221 2347888888776653
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=7.3e-05 Score=104.18 Aligned_cols=164 Identities=13% Similarity=0.122 Sum_probs=106.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh-------
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV------- 517 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~------- 517 (1152)
.+||+||+|||||.++..+...+.. ..+..++-...++...+...++...
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~-----------------------~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~ 1362 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPD-----------------------FEVVSLNFSSATTPELLLKTFDHHCEYKRTPS 1362 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTT-----------------------EEEEEECCCTTCCHHHHHHHHHHHEEEEECTT
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCC-----------------------CceEEEEeeCCCCHHHHHHHHhhcceEEeccC
Confidence 3899999999999887554332210 1133444444556666666665411
Q ss_pred ----hCCC-CCCceEEEEeCCCCCCHH------HHHHHHHHHhh-----C-------CCCEEEEEEcCCC-----CcchH
Q 036794 518 ----TSRP-PSQYRIFVFDDCDTLSPD------SWSAISKVVDR-----A-------PRRVVFILVSSSL-----DALPH 569 (1152)
Q Consensus 518 ----~~P~-~a~~kVVIIDEID~Ls~e------aqnaLLklLEe-----p-------p~~VifILaTN~~-----dkL~~ 569 (1152)
..|. .++.-||||||+++...+ ..+.|.++|+. + -.++.||+++|.+ ..+++
T Consensus 1363 ~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~ 1442 (3245)
T 3vkg_A 1363 GETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTH 1442 (3245)
T ss_dssp SCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCH
T ss_pred CCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCH
Confidence 1233 256678999999987644 56777888875 1 1467788888765 35899
Q ss_pred HHHccceEEEecCCChhHHHHHHHHHHHHcC-----C-CCCHHHHHHHHH---------------hcCCCHHHHHHHHHH
Q 036794 570 IIISRCQKFFFPKMKDADIIYTLQWIASKEG-----I-EIDKDALKLIAS---------------RSDGSLRDAEMTLEQ 628 (1152)
Q Consensus 570 aL~SR~qvI~F~~p~~~EI~eiL~~iakkeG-----l-~Id~dALelLAe---------------~s~GDLR~Ain~LEk 628 (1152)
.+.+|+.++.++.|+.+++..+...+....- + .+.+..+...++ +.--|+|++...++-
T Consensus 1443 Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~k~HY~FnLRDLsrv~qG 1522 (3245)
T 3vkg_A 1443 RFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDIQAHYIYSPRELSRWDRA 1522 (3245)
T ss_dssp HHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTTSTTCCCCHHHHHHHHHH
T ss_pred HHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCCccccHHHHHHHHHH
Confidence 9999999999999999999888766554311 0 111232332222 123489999988887
Q ss_pred HHH
Q 036794 629 LSL 631 (1152)
Q Consensus 629 LsL 631 (1152)
+..
T Consensus 1523 ll~ 1525 (3245)
T 3vkg_A 1523 LLE 1525 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.68 E-value=0.00023 Score=85.05 Aligned_cols=194 Identities=12% Similarity=0.091 Sum_probs=106.7
Q ss_pred CCCCcCcccCcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHH---cccCCCCCCCCCCCCccccccCCC
Q 036794 416 MPRTFRDLVGQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARAL---NCQSLEQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 416 RP~sFddLVGQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL---~~~~~e~~epcg~c~~c~~i~~g~ 491 (1152)
.|.....+||.+..+..|..++... .....++|+||.|+|||++|..++... ...+ +++....+..-....
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-----~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-----PGGVHWVSVGKQDKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-----TTCEEEEEEESCCHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-----CCceEEEECCCCchH
Confidence 4566678999999999999998753 234579999999999999999987532 1111 000000000000000
Q ss_pred --ccce----EEeC------CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 492 --SRNI----KEVG------PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 492 --~~dv----iEId------aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
...+ ..++ .......+.+...+...... ..++-+||||+++.. .. ++..+..+.+|+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~LLVLDdv~~~------~~---l~~l~~~~~ilv 262 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR--KHPRSLLILDDVWDS------WV---LKAFDSQCQILL 262 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH--TCTTCEEEEEEECCH------HH---HHTTCSSCEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc--CCCCeEEEEeCCCCH------HH---HHHhcCCCeEEE
Confidence 0000 0000 01112233333333322111 013469999999752 12 233356778888
Q ss_pred EcCCCCcchHHHHccceEEEe---cCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Q 036794 560 VSSSLDALPHIIISRCQKFFF---PKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 560 aTN~~dkL~~aL~SR~qvI~F---~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkL 629 (1152)
+|.+...... + ....+.+ .+++.++..+++...+... ..-.++.+..|++.++|..-.+.-....+
T Consensus 263 TsR~~~~~~~-~--~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a~~l 331 (591)
T 1z6t_A 263 TTRDKSVTDS-V--MGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIGALL 331 (591)
T ss_dssp EESCGGGGTT-C--CSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ECCCcHHHHh-c--CCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 8766542111 1 1233444 4789999988888776431 11224577889999999887765544433
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00024 Score=73.10 Aligned_cols=69 Identities=9% Similarity=0.131 Sum_probs=48.3
Q ss_pred CCceEEEEeCCCC---CCHHHHHHHHHHHhhCCCCEEEEEEcC--CCCcchHHHHcc--ceEEEecCCChhHHHHHHH
Q 036794 523 SQYRIFVFDDCDT---LSPDSWSAISKVVDRAPRRVVFILVSS--SLDALPHIIISR--CQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 523 a~~kVVIIDEID~---Ls~eaqnaLLklLEepp~~VifILaTN--~~dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~ 593 (1152)
.+..++|+||++- +.......|.++|++. ...+|+++. ....+...+.+| +.++.|.+.+.+++...|.
T Consensus 98 ~~p~llilDEigp~~~ld~~~~~~l~~~l~~~--~~~~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred cCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC--CCeEEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 3458999999643 4566788999999873 443555553 333466678888 7899998888777665553
|
| >1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.0005 Score=68.05 Aligned_cols=124 Identities=9% Similarity=0.080 Sum_probs=85.8
Q ss_pred HHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHH
Q 036794 433 LSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDL 512 (1152)
Q Consensus 433 Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreL 512 (1152)
|...++++ ..++|||||+.-.-....+..|.+.+..... ...+++.++. ..++ .++
T Consensus 9 l~~~l~~~-~~pvyll~G~E~~l~~~~~~~i~~~~~~~~~------------------~e~~~~~~~~--~~~~---~~l 64 (140)
T 1jql_B 9 LRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGF------------------EEHHTFSIDP--NTDW---NAI 64 (140)
T ss_dssp HHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTC------------------CEEECCCCST--TCCH---HHH
T ss_pred HHHHHhcc-CCceEEEEcCcHHHHHHHHHHHHHHHHHCCC------------------cceeEEEecC--CCCH---HHH
Confidence 33445543 7889999999987788888888776543210 0111222222 2444 456
Q ss_pred HHHHhhCCCCCCceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC------cchHHHHccceEEEe
Q 036794 513 LDNMVTSRPPSQYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD------ALPHIIISRCQKFFF 580 (1152)
Q Consensus 513 le~a~~~P~~a~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d------kL~~aL~SR~qvI~F 580 (1152)
++.+...|+++.+++|+|.+... +..+....|..+++.+++++++|++...++ ++.+++...+..+.|
T Consensus 65 ~~~~~s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~~ 139 (140)
T 1jql_B 65 FSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp HHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred HHHHhcCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEEe
Confidence 77777889999999999998755 566677889999999999999999886543 466666666666654
|
| >2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00011 Score=77.25 Aligned_cols=61 Identities=7% Similarity=0.103 Sum_probs=43.8
Q ss_pred CCceEEEEeCCCCCC--H-HHH--HHHHHHHhhC-CCCEEEEEEcCCCCcchHHHHccceE-EEecCC
Q 036794 523 SQYRIFVFDDCDTLS--P-DSW--SAISKVVDRA-PRRVVFILVSSSLDALPHIIISRCQK-FFFPKM 583 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls--~-eaq--naLLklLEep-p~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p 583 (1152)
+.+.||||||++.+. . +.. ..++..|+.. .....+|++|+.+..+...|+.|+.. +.|.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 456899999999982 2 111 2456666653 34667889998888999999999884 667663
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=7.5e-05 Score=77.26 Aligned_cols=52 Identities=13% Similarity=0.266 Sum_probs=34.5
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC------CcchHHHHccceE
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL------DALPHIIISRCQK 577 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~------dkL~~aL~SR~qv 577 (1152)
..+.+|||||++.++++....|..+.+. ++.+|+++... -...+.|++++..
T Consensus 75 ~~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~ 132 (184)
T 2orw_A 75 EDTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADT 132 (184)
T ss_dssp TTEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSE
T ss_pred CCCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhh
Confidence 3568999999999987777777667765 44455544322 2345567777753
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0015 Score=83.82 Aligned_cols=194 Identities=12% Similarity=0.067 Sum_probs=106.1
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCcc
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~ 493 (1152)
--|.....++|.+..++.|.+.+... .....+.|+|+.|+|||++|+.++........ ..+++....+..- ....
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~--~~~~~~~~v~~~~--~~~~ 193 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEG--CFSGGVHWVSIGK--QDKS 193 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTT--TSTTCEEEEECCS--CCHH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHh--hCCCeEEEEEECC--cCch
Confidence 34566678999999999999998653 33457889999999999999888654211000 0011110000000 0000
Q ss_pred ceE--------EeC------CCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEE
Q 036794 494 NIK--------EVG------PVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFIL 559 (1152)
Q Consensus 494 dvi--------EId------aas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifIL 559 (1152)
... .+. .....+.+.+.+.+...... ..++-+||||+++.. . .++.......+|+
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~LlvlDd~~~~--~-------~~~~~~~~~~ilv 262 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLR--KHPRSLLILDDVWDP--W-------VLKAFDNQCQILL 262 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSS--SSCSCEEEEESCCCH--H-------HHTTTCSSCEEEE
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhc--cCCCEEEEEecCCCH--H-------HHHhhcCCCEEEE
Confidence 000 000 00112233333333332111 123569999999853 1 2333356778888
Q ss_pred EcCCCCcchHHHHccceEEEecC-CChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHH
Q 036794 560 VSSSLDALPHIIISRCQKFFFPK-MKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMT 625 (1152)
Q Consensus 560 aTN~~dkL~~aL~SR~qvI~F~~-p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~ 625 (1152)
+|.+.... ..+......+.+.+ ++.++..+.+...+....-. .++....|++.++|-.-.+...
T Consensus 263 TtR~~~~~-~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~glPLal~~~ 327 (1249)
T 3sfz_A 263 TTRDKSVT-DSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGSPLVVSLI 327 (1249)
T ss_dssp EESSTTTT-TTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTCHHHHHHH
T ss_pred EcCCHHHH-HhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCCHHHHHHH
Confidence 88766422 11122234577775 88888888887766432222 2345677888888866554433
|
| >3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A* | Back alignment and structure |
|---|
Probab=97.44 E-value=0.0026 Score=89.13 Aligned_cols=170 Identities=17% Similarity=0.155 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
....+|..++..... ..+.||+|||||.+++.+|+.++... +.++-....+..
T Consensus 592 rcy~tl~~Al~~~~g---g~~~GPaGtGKTet~k~La~~lgr~~------------------------~vfnC~~~~d~~ 644 (3245)
T 3vkg_A 592 RCYLTLTQALESRMG---GNPFGPAGTGKTETVKALGSQLGRFV------------------------LVFCCDEGFDLQ 644 (3245)
T ss_dssp HHHHHHHHHHHTTCE---EEEECSTTSSHHHHHHHHHHHTTCCE------------------------EEEECSSCCCHH
T ss_pred HHHHHHHHHHHhcCC---CCCCCCCCCCHHHHHHHHHHHhCCeE------------------------EEEeCCCCCCHH
Confidence 455677777766543 46889999999999999999998541 111112234555
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---------------------CCCCEEEEEEcCC---
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---------------------APRRVVFILVSSS--- 563 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---------------------pp~~VifILaTN~--- 563 (1152)
.+..++..+... +...++||++++..+....+...+.. ....+.|+++.|.
T Consensus 645 ~~g~i~~G~~~~-----GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~ 719 (3245)
T 3vkg_A 645 AMSRIFVGLCQC-----GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGYA 719 (3245)
T ss_dssp HHHHHHHHHHHH-----TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCGG
T ss_pred HHHHHHhhHhhc-----CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCcc
Confidence 566666665432 35779999999999887766554431 1124445555552
Q ss_pred -CCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHh-------------cCCCHHHHHHHHHHH
Q 036794 564 -LDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR-------------SDGSLRDAEMTLEQL 629 (1152)
Q Consensus 564 -~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~-------------s~GDLR~Ain~LEkL 629 (1152)
...||+.|+.+|..+.+..|+.+.+.+++ +-.+|+.-.......+... .+=.||.+.+.|..+
T Consensus 720 gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRalKsVL~~A 796 (3245)
T 3vkg_A 720 GRSNLPDNLKKLFRSMAMIKPDREMIAQVM---LYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRALKSVLVSA 796 (3245)
T ss_dssp GCCCSCHHHHTTEEEEECCSCCHHHHHHHH---HHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHHHHHHHHH
T ss_pred CcccChHHHHhhcEEEEEeCCCHHHHHHHH---HHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHHHHHHHHH
Confidence 23699999999999999999988877765 3456664323222222211 234689998888776
Q ss_pred HHh
Q 036794 630 SLL 632 (1152)
Q Consensus 630 sLl 632 (1152)
..+
T Consensus 797 G~l 799 (3245)
T 3vkg_A 797 GGI 799 (3245)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
|
| >2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0013 Score=78.62 Aligned_cols=185 Identities=11% Similarity=0.072 Sum_probs=96.5
Q ss_pred cCcHHHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC------------
Q 036794 424 VGQNLVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR------------ 489 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~------------ 489 (1152)
+|.+..++.|.+++..+ .....+.|+|+.|+|||++|+.+++.......... .+.+..|..-..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F--~~~~wv~vs~~~~~~~~~~~~~il 208 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINY--DSIVWLKDSGTAPKSTFDLFTDIL 208 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTB--SEEEEEECCCCSTTHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccC--CcEEEEEECCCCCCCHHHHHHHHH
Confidence 49999999999998764 23467899999999999999999862111000000 001111111000
Q ss_pred ---CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC-ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 490 ---GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ-YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 490 ---g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~-~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+...+...+......+.+.+...+.... .++ +-+||||+++.... . .+. .. ....+|+||.+..
T Consensus 209 ~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L----~~~kr~LlVLDdv~~~~~--~-~~~---~~--~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 209 LMLKSEDDLLNFPSVEHVTSVVLKRMICNAL----IDRPNTLFVFDDVVQEET--I-RWA---QE--LRLRCLVTTRDVE 276 (549)
T ss_dssp HHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH----TTSTTEEEEEEEECCHHH--H-HHH---HH--TTCEEEEEESBGG
T ss_pred HHHhcCcccccccccccccHHHHHHHHHHHH----cCCCcEEEEEECCCCchh--h-ccc---cc--CCCEEEEEcCCHH
Confidence 0000000000000111222222222221 133 57899999987321 1 121 11 4667777776544
Q ss_pred cchHHHHccceEEEecCCChhHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHHH
Q 036794 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGI-EIDKDALKLIASRSDGSLRDAE 623 (1152)
Q Consensus 566 kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl-~Id~dALelLAe~s~GDLR~Ai 623 (1152)
+......-...+.+.+++.++..+++...+..... .-.+++...|++.++|..-.+.
T Consensus 277 -v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~ 334 (549)
T 2a5y_B 277 -ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLM 334 (549)
T ss_dssp -GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHH
T ss_pred -HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHH
Confidence 22111112246889999999988888765322111 1113467778888988776654
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.0025 Score=72.06 Aligned_cols=23 Identities=22% Similarity=0.313 Sum_probs=21.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..+||+||||+|||++|..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 46799999999999999999887
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0011 Score=71.07 Aligned_cols=107 Identities=16% Similarity=0.155 Sum_probs=56.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--C-CC---CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--K-PC---GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--e-pc---g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
+..+|++||+|+||||++..++..+........ . .. +....+.. .|.......+ .... ++++.+
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr--lG~~~~~~~~-----~~~~---~i~~~i 81 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR--TGTSLPSVEV-----ESAP---EILNYI 81 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC--CCCSSCCEEE-----SSTH---HHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh--cCCCcccccc-----CCHH---HHHHHH
Confidence 457899999999999999888776643211000 0 00 00000000 0111111111 1122 334433
Q ss_pred hhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
........+.+|+|||++.+..+....+..+.+ . .+.+|++..
T Consensus 82 ~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~-~--gi~Vil~Gl 124 (223)
T 2b8t_A 82 MSNSFNDETKVIGIDEVQFFDDRICEVANILAE-N--GFVVIISGL 124 (223)
T ss_dssp HSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHH-T--TCEEEEECC
T ss_pred HHHhhCCCCCEEEEecCccCcHHHHHHHHHHHh-C--CCeEEEEec
Confidence 322223457899999999998776555544333 2 567777765
|
| >3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A* | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00094 Score=80.79 Aligned_cols=95 Identities=18% Similarity=0.274 Sum_probs=54.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHH-------HH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLL-------DN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLl-------e~ 515 (1152)
...++|+|+||||||+++..++..+...... +..+.+ .......+.+.+ ..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~---------------------Vl~~Ap-T~~Aa~~L~e~~~~~a~Tih~ 261 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLE---------------------VGLCAP-TGKAARRLGEVTGRTASTVHR 261 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCC---------------------EEEEES-SHHHHHHHHHHHTSCEEEHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCe---------------------EEEecC-cHHHHHHhHhhhcccHHHHHH
Confidence 3578999999999999999999876543110 111111 011111111110 00
Q ss_pred -HhhCC--------CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 516 -MVTSR--------PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 516 -a~~~P--------~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
+...+ ....+.+|||||+.++....+..|++.+. ....+|++..
T Consensus 262 ll~~~~~~~~~~~~~~~~~dvlIIDEasml~~~~~~~Ll~~~~---~~~~lilvGD 314 (574)
T 3e1s_A 262 LLGYGPQGFRHNHLEPAPYDLLIVDEVSMMGDALMLSLLAAVP---PGARVLLVGD 314 (574)
T ss_dssp HTTEETTEESCSSSSCCSCSEEEECCGGGCCHHHHHHHHTTSC---TTCEEEEEEC
T ss_pred HHcCCcchhhhhhcccccCCEEEEcCccCCCHHHHHHHHHhCc---CCCEEEEEec
Confidence 00000 12356899999999999888777776654 4556666553
|
| >2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0055 Score=65.44 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+|++||+|+|||.+|..++..+
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 37999999999999998887765
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.021 Score=73.33 Aligned_cols=44 Identities=20% Similarity=0.097 Sum_probs=38.1
Q ss_pred ccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.||.+..+..|.+++........+.|+|+.|+|||++|+.++..
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 49999999999999987444568999999999999999999853
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.013 Score=63.18 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.||+|+||||+|+.||+.++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 57899999999999999999998754
|
| >1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0038 Score=75.89 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=29.2
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchH
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~ 569 (1152)
...+|||||++++.......|++.+ +....+|++.. ++.+++
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l---~~~~~liLvGD-~~QL~~ 303 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLGD-RDQLAS 303 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEEC-TTSGGG
T ss_pred CCCEEEEechhhCCHHHHHHHHHhC---CCCCEEEEEcc-hhhcCC
Confidence 5679999999999877766776655 45666777654 333544
|
| >2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.018 Score=62.00 Aligned_cols=164 Identities=13% Similarity=0.167 Sum_probs=82.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCC----CCCCCCCC--ccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQ----PKPCGFCN--SCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~----~epcg~c~--~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
..++|.|++|+|||+++-.+|..+....... ..|-+... .+..-........+..... ......+..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~-~~~e~~l~~~L~--- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGM-TLEEMDLDALLK--- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTE-EEEECCHHHHHH---
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCc-ccccccHHHHHh---
Confidence 4589999999999999999988875332110 01100000 0000000000011111100 000011222222
Q ss_pred hCCCCCCceEEEEeCCCCCCHH------HHHHHHHHHhhCCCCEEEEEEcCC------------------CCcchHHHHc
Q 036794 518 TSRPPSQYRIFVFDDCDTLSPD------SWSAISKVVDRAPRRVVFILVSSS------------------LDALPHIIIS 573 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~Ls~e------aqnaLLklLEepp~~VifILaTN~------------------~dkL~~aL~S 573 (1152)
..+.+|||||+...+.. .+..+...++ ..+-+|.++|- .+.+|..+..
T Consensus 83 -----~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~---sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~ 154 (228)
T 2r8r_A 83 -----AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLA---AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQ 154 (228)
T ss_dssp -----HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHH---TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHH
T ss_pred -----cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHc---CCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHh
Confidence 12479999999875321 3334433333 34455566551 1347778888
Q ss_pred cceEEEecCCChhHHHHHHHHHHHHcCCC-CCHHHHHHHHHh-cCCCHHHHHH
Q 036794 574 RCQKFFFPKMKDADIIYTLQWIASKEGIE-IDKDALKLIASR-SDGSLRDAEM 624 (1152)
Q Consensus 574 R~qvI~F~~p~~~EI~eiL~~iakkeGl~-Id~dALelLAe~-s~GDLR~Ain 624 (1152)
.+..|.+-.++++++.++|. +|.- ..+.+-..+..+ ..||+-.+..
T Consensus 155 ~a~~v~lvD~~p~~l~~rl~-----~g~vy~~~~~~~a~~~~f~~~nl~~lre 202 (228)
T 2r8r_A 155 EAFDLVLIDLPPRELLERLR-----DGKVYVPEQARAAIDAFFTQTNLTALRE 202 (228)
T ss_dssp TCSEEEEBCCCHHHHHHHHH-----TTCCCCTTCCHHHHHHHCCHHHHHHHHH
T ss_pred hCCeEEEecCCHHHHHHHHH-----CCCccChhHHHHHHHhhhchhhHHHHHH
Confidence 88878887888888777653 4433 233333334444 3456655544
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0041 Score=65.60 Aligned_cols=123 Identities=12% Similarity=0.107 Sum_probs=66.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCC-----CCCCCCCCccccccCCCccceEEeCCCCCCC---------HHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQ-----PKPCGFCNSCISHDRGKSRNIKEVGPVGNFD---------FESIL 510 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~-----~epcg~c~~c~~i~~g~~~dviEIdaas~~~---------vdeIr 510 (1152)
.+++|+.+|.||||+|-.+|-..-...... ......+.....+..- ...+...+. .+. .....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~--gf~~~~~~~~~~~~~a~ 106 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMAT--GFTWETQNREADTAACM 106 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCT--TCCCCGGGHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEccc--ccccCCCCcHHHHHHHH
Confidence 478888899999999999987653322110 0000000000000000 011111111 111 12233
Q ss_pred HHHHHHhhCCCCCCceEEEEeCC------CCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDC------DTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEI------D~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..++.+...-..+.+.+|||||+ +.++. +.++.+|..-|..+-+|++++.+. +.|.....
T Consensus 107 ~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~AD 172 (196)
T 1g5t_A 107 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLAD 172 (196)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHCS
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc---HHHHHhCc
Confidence 44444444444577899999998 34443 458888888889999999998753 44444444
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.025 Score=55.23 Aligned_cols=25 Identities=20% Similarity=0.490 Sum_probs=21.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+||+|+||||+|+.| +.++..
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~ 27 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAK 27 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCc
Confidence 5889999999999999999 766544
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.026 Score=57.91 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
+..++|+||+|+|||+++..++.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999987
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0065 Score=60.42 Aligned_cols=22 Identities=32% Similarity=0.473 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|.|+||+||||+|+.|++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999998
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.21 E-value=0.026 Score=58.66 Aligned_cols=71 Identities=18% Similarity=0.213 Sum_probs=43.3
Q ss_pred CCCceEEEEeCCCCC---CHHHHHHHHHHHhhCCCCEEE--EEEcCCC-CcchHHHHcc--ceEEEecCCChhHHHHHHH
Q 036794 522 PSQYRIFVFDDCDTL---SPDSWSAISKVVDRAPRRVVF--ILVSSSL-DALPHIIISR--CQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 522 ~a~~kVVIIDEID~L---s~eaqnaLLklLEepp~~Vif--ILaTN~~-dkL~~aL~SR--~qvI~F~~p~~~EI~eiL~ 593 (1152)
..++.||||||++.+ ....+.+|.++++... .+++ |.++.+. ..+.+.+..+ +.++.+..-..+.+...|-
T Consensus 103 ~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~-~~ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~i~ 181 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPG-TIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPDIV 181 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSS-CCEEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHHHH
T ss_pred ccCCCEEEEeCCCccccccHHHHHHHHHHHhCCC-cEEEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHHHH
Confidence 456789999998666 4456778888888642 2332 1222332 2355666554 5678877766666555443
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=96.03 E-value=0.019 Score=56.58 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+++.|++.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 57899999999999999999998754
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.013 Score=78.55 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+|+|||||||||++|++++.+...
T Consensus 1083 ~~~l~~G~~g~GKT~la~~~~~~~~~ 1108 (1706)
T 3cmw_A 1083 RIVEIYGPESSGKTTLTLQVIAAAQR 1108 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCChHHHHHHHHHHhhh
Confidence 35999999999999999999987543
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.035 Score=57.09 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999665
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.81 E-value=0.008 Score=81.42 Aligned_cols=26 Identities=31% Similarity=0.500 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||||||++|.+++.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34799999999999999999988754
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.022 Score=58.79 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+.|.||+|+||||+++.|+..+.
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35799999999999999999998543
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=95.77 E-value=0.11 Score=53.54 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+||+|+||||+|+.|++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999987643
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.72 E-value=0.082 Score=55.79 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=17.0
Q ss_pred cEEEEEcCCCchHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLA 464 (1152)
..+++.||+|+|||++...+.
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHHH
Confidence 368999999999998766554
|
| >2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A* | Back alignment and structure |
|---|
Probab=95.70 E-value=0.13 Score=62.13 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=50.7
Q ss_pred ceEEEEeCCCCCC----HHHHHHHHHHHhh-CCCCEEEEEEcCCCC--cchHHHHccce-EEEecCCChhHHHHHH
Q 036794 525 YRIFVFDDCDTLS----PDSWSAISKVVDR-APRRVVFILVSSSLD--ALPHIIISRCQ-KFFFPKMKDADIIYTL 592 (1152)
Q Consensus 525 ~kVVIIDEID~Ls----~eaqnaLLklLEe-pp~~VifILaTN~~d--kL~~aL~SR~q-vI~F~~p~~~EI~eiL 592 (1152)
+-+|||||++.+. .+....|.+++.. ....+.+|++|..+. .++..|++.+. +|-|...+..+...+|
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 4689999999874 3445566666666 446899999998886 78888888887 5888877777766555
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=95.57 E-value=0.044 Score=62.22 Aligned_cols=85 Identities=24% Similarity=0.308 Sum_probs=46.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCC-ccceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGK-SRNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~-~~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..++|+||||+|||++|..++..+.... ..|.+....... ..+. ...+....+ ...+++.+++..
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g----~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~---~~~e~~l~~~~~ 133 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAG----GIAAFIDAEHALDPEYAKKLGVDTDSLLVSQP---DTGEQALEIADM 133 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCC----CeEEEEECCCCcCHHHHHHcCCCHHHeEEecC---CCHHHHHHHHHH
Confidence 35799999999999999999987653221 111110000000 0111 111222222 245566666655
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||++..+.
T Consensus 134 l~~~---~~~~lIVIDsl~~l~ 152 (349)
T 2zr9_A 134 LVRS---GALDIIVIDSVAALV 152 (349)
T ss_dssp HHTT---TCCSEEEEECGGGCC
T ss_pred HHhc---CCCCEEEEcChHhhc
Confidence 4322 346899999998876
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0059 Score=68.95 Aligned_cols=28 Identities=36% Similarity=0.538 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+||+|+|||++|+.||+.+++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~~~ 32 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALPCE 32 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3478999999999999999999998754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.081 Score=56.12 Aligned_cols=56 Identities=11% Similarity=0.033 Sum_probs=36.9
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~ 593 (1152)
++++|+| +.......+.+.+. ..+.+|+++.+++.+...|..|. .-+++++..++.
T Consensus 108 G~illLD----LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~Rl~~rG------~~~~e~i~~rl~ 163 (219)
T 1s96_A 108 GVDVFLD----IDWQGAQQIRQKMP---HARSIFILPPSKIELDRRLRGRG------QDSEEVIAKRMA 163 (219)
T ss_dssp TCEEEEE----CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHHHHHTTS------CSCHHHHHHHHH
T ss_pred CCeEEEE----ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHHHHHHcC------CCCHHHHHHHHH
Confidence 4899999 77777777877775 35667777777666655566665 123455555544
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=95.56 E-value=0.025 Score=65.52 Aligned_cols=29 Identities=17% Similarity=0.094 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+..++|+|+||+||||+|+.+++.+++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~ 285 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV 285 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcE
Confidence 34579999999999999999998876543
|
| >1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.01 Score=62.04 Aligned_cols=104 Identities=13% Similarity=0.165 Sum_probs=52.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--CCC-CC--CCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHh
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--KPC-GF--CNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMV 517 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--epc-g~--c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~ 517 (1152)
+..++++||.|+|||+.+-.++..+.......- .|. .. .........+.......+.. . .++++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~-----~---~~i~~~~~ 79 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKN-----S---REILKYFE 79 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESS-----S---THHHHHCC
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCC-----H---HHHHHHHh
Confidence 457899999999999888877776532211100 000 00 00000000011111111111 1 13444332
Q ss_pred hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 518 TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 518 ~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
..+.+|+|||++.++++....|..+.+. ++.+|++.-
T Consensus 80 -----~~~dvViIDEaqfl~~~~v~~l~~l~~~---~~~Vi~~Gl 116 (191)
T 1xx6_A 80 -----EDTEVIAIDEVQFFDDEIVEIVNKIAES---GRRVICAGL 116 (191)
T ss_dssp -----TTCSEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEEEC
T ss_pred -----ccCCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEEEec
Confidence 2468999999999987765554444332 556666654
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=95.35 E-value=0.067 Score=62.68 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++..||..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458999999999999999999988753
|
| >3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.33 E-value=0.019 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+++.+|+|+|||.++-.++..+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999988776653
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.13 Score=56.99 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.||+|+||||++..||..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998875
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.25 E-value=0.084 Score=60.30 Aligned_cols=26 Identities=23% Similarity=0.323 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||+|||+++..++..+.
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999998764
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.089 Score=61.82 Aligned_cols=152 Identities=11% Similarity=0.113 Sum_probs=73.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCC-CCccccc------cCCCccceEEeCCCCCCC-HHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGF-CNSCISH------DRGKSRNIKEVGPVGNFD-FESILDLLD 514 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~-c~~c~~i------~~g~~~dviEIdaas~~~-vdeIreLle 514 (1152)
+..++|.|++|+||||++..||..+...... .... |...... ..+...++-........+ .+-+.+.+.
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~k---Vllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~ 176 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYK---VGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVD 176 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCC---EEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCe---EEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHH
Confidence 5689999999999999999999887543211 0000 0000000 000011111111111122 222344555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCH--HHHHHHHHHHhhC-CCCEEEEEEcCCCCc---chHHHHccc--eEEEecCCChh
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSP--DSWSAISKVVDRA-PRRVVFILVSSSLDA---LPHIIISRC--QKFFFPKMKDA 586 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~--eaqnaLLklLEep-p~~VifILaTN~~dk---L~~aL~SR~--qvI~F~~p~~~ 586 (1152)
.+.. ..+.+||||.+..+.. .....|.++..-. +..++||+-+..-.. ....+...+ ..+-+.+++..
T Consensus 177 ~a~~----~~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq~a~~~a~~f~~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 177 YFKS----KGVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQQAYNQALAFKEATPIGSIIVTKLDGS 252 (443)
T ss_dssp HHHH----TTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHHHSCTTEEEEEECCSSC
T ss_pred HHHh----CCCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCchhHHHHHHHHHhhCCCeEEEEECCCCc
Confidence 5432 2368999999988753 3344444443332 455666665543221 122233222 23667777765
Q ss_pred HHHHHHHHHHHHcCC
Q 036794 587 DIIYTLQWIASKEGI 601 (1152)
Q Consensus 587 EI~eiL~~iakkeGl 601 (1152)
.....+..+....++
T Consensus 253 ~~gG~~ls~~~~~g~ 267 (443)
T 3dm5_A 253 AKGGGALSAVAATGA 267 (443)
T ss_dssp SSHHHHHHHHHTTCC
T ss_pred ccccHHHHHHHHHCC
Confidence 443333333333333
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.086 Score=60.13 Aligned_cols=125 Identities=14% Similarity=0.165 Sum_probs=63.9
Q ss_pred CCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCC----CCCCCCCCCccccccCCCcc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLE----QPKPCGFCNSCISHDRGKSR 493 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e----~~epcg~c~~c~~i~~g~~~ 493 (1152)
.+++++.-.+ + |.+.+... ...++|.||+|+||||+.++++..+...... ...|..+... ......
T Consensus 104 ~~l~~lg~~~-~---l~~l~~~~--~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~----~~~~~v 173 (356)
T 3jvv_A 104 LTMEELGMGE-V---FKRVSDVP--RGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHE----SKKCLV 173 (356)
T ss_dssp CCTTTTTCCH-H---HHHHHHCS--SEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCC----CSSSEE
T ss_pred CCHHHcCChH-H---HHHHHhCC--CCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhh----ccccce
Confidence 3566664433 3 33333322 2369999999999999999999987643110 0011111000 000000
Q ss_pred ceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 494 NIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 494 dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++.. .... +.+.+..+. ..++.+|++||+- ..+....+++..+. ... +|+++...+
T Consensus 174 ~q~~~~~-~~~~---~~~~La~aL----~~~PdvillDEp~--d~e~~~~~~~~~~~--G~~-vl~t~H~~~ 232 (356)
T 3jvv_A 174 NQREVHR-DTLG---FSEALRSAL----REDPDIILVGEMR--DLETIRLALTAAET--GHL-VFGTLHTTS 232 (356)
T ss_dssp EEEEBTT-TBSC---HHHHHHHHT----TSCCSEEEESCCC--SHHHHHHHHHHHHT--TCE-EEEEESCSS
T ss_pred eeeeecc-ccCC---HHHHHHHHh----hhCcCEEecCCCC--CHHHHHHHHHHHhc--CCE-EEEEEccCh
Confidence 0112211 1122 223333332 2455899999996 46666666666554 333 566666555
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.011 Score=58.95 Aligned_cols=27 Identities=19% Similarity=0.303 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+|++|+||||+|+.|++.++.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~ 29 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 346899999999999999999998764
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=95.13 E-value=0.066 Score=61.08 Aligned_cols=85 Identities=25% Similarity=0.368 Sum_probs=46.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCC-ccceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGK-SRNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~-~~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..++|+|+||+|||++|..++..+.... .+|.+....... ..+. ...+...++ ...+++.+++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g----~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~---~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQP---DTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCC----CeEEEEeCCCCccHHHHHHcCCChhheeeeCC---CCHHHHHHHHHH
Confidence 35799999999999999999987753221 111111000000 0011 111222222 234566666655
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||.+..+.
T Consensus 136 l~~~---~~~~lVVIDsl~~l~ 154 (356)
T 1u94_A 136 LARS---GAVDVIVVDSVAALT 154 (356)
T ss_dssp HHHH---TCCSEEEEECGGGCC
T ss_pred HHhc---cCCCEEEEcCHHHhc
Confidence 4322 345899999998875
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=95.06 E-value=0.13 Score=53.12 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=22.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|+||+|+||||+|+.|++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 7899999999999999999988654
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=95.06 E-value=0.06 Score=56.11 Aligned_cols=25 Identities=28% Similarity=0.416 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.++..+
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHH
Confidence 3579999999999999999999853
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.04 Score=60.13 Aligned_cols=28 Identities=21% Similarity=0.210 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|.||+|+|||++++.|+..+..
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3457899999999999999999987643
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.11 Score=55.97 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=22.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+|+||+||||+|+.|++.+.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999854
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.029 Score=59.10 Aligned_cols=42 Identities=29% Similarity=0.301 Sum_probs=29.5
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..+|++|. +..++.. +..|. .+.|.||.|+||||++++++..
T Consensus 4 ~i~pk~~g----~~~~l~~----i~~Ge---~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 4 VIRPKTLG----QKHYVDA----IDTNT---IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp CCCCCSHH----HHHHHHH----HHHCS---EEEEECCTTSSTTHHHHHHHHH
T ss_pred ccccCCHh----HHHHHHh----ccCCC---EEEEECCCCCCHHHHHHHHhcC
Confidence 35677763 3333332 34443 5789999999999999999987
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=94.96 E-value=0.08 Score=57.57 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|.|+||+||||+|+.|++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999863
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.94 E-value=0.21 Score=51.29 Aligned_cols=118 Identities=14% Similarity=0.070 Sum_probs=55.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCC-CCCCCccccccCCCccceEEeCCCCCCC-------HHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKP-CGFCNSCISHDRGKSRNIKEVGPVGNFD-------FESILDLLDNM 516 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ep-cg~c~~c~~i~~g~~~dviEIdaas~~~-------vdeIreLle~a 516 (1152)
.++|.|++|+|||+++..|...-.... ....+ +........+.......+..+|.++... .+....++...
T Consensus 31 ~i~v~G~~~~GKSslin~l~~~~~~~~-~~~~~~~t~~~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~ 109 (223)
T 4dhe_A 31 EIAFAGRSNAGKSTAINVLCNQKRLAF-ASKTPGRTQHINYFSVGPAAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSY 109 (223)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSSSSC-TTCCCCSCCCEEEEEESCTTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCCccee-ecCCCCcccceEEEEecCCCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHH
Confidence 588999999999999998854310000 01111 1111111111111223355555544222 23334444443
Q ss_pred hhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.........-++++|--+.+.. ....+++.+...... +|++.|..|.
T Consensus 110 ~~~~~~~d~vi~v~d~~~~~~~-~~~~~~~~l~~~~~p--~i~v~nK~Dl 156 (223)
T 4dhe_A 110 LQTRPQLCGMILMMDARRPLTE-LDRRMIEWFAPTGKP--IHSLLTKCDK 156 (223)
T ss_dssp HHHCTTEEEEEEEEETTSCCCH-HHHHHHHHHGGGCCC--EEEEEECGGG
T ss_pred HhcCcCcCEEEEEEeCCCCCCH-HHHHHHHHHHhcCCC--EEEEEecccc
Confidence 2221112235667776555553 334566666653333 4455555553
|
| >3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=94.85 E-value=0.04 Score=66.05 Aligned_cols=42 Identities=24% Similarity=0.197 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
|..++..+.+.+..++ ..+|+++|+|+|||.++-.++..+..
T Consensus 183 Q~~ai~~~~~~~~~~~--~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 183 QQIAINRAVQSVLQGK--KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCC--CceEEEecCCCChHHHHHHHHHHHHh
Confidence 5667777777776654 34789999999999998877776643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.82 E-value=0.018 Score=58.03 Aligned_cols=28 Identities=25% Similarity=0.183 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
...++|+|++|+||||+|+.|++.++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~ 32 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI 32 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3468999999999999999999998754
|
| >2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.016 Score=61.86 Aligned_cols=36 Identities=14% Similarity=0.267 Sum_probs=25.5
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcC
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN 562 (1152)
.+.+|+|||+..++.+..+.| ..|.+ .++.||++.-
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l-~~l~~--~~~~Vi~~Gl 136 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVV-QVLAN--RGYRVIVAGL 136 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHH-HHHHH--TTCEEEEEEC
T ss_pred CCCEEEEECcccCCHHHHHHH-HHHhh--CCCEEEEEec
Confidence 468999999999988776444 44333 2667777764
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=94.75 E-value=0.16 Score=58.07 Aligned_cols=85 Identities=22% Similarity=0.355 Sum_probs=48.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCCc-cceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGKS-RNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~~-~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..++|+||||+|||++|..++..+.... .+|.+....... ..+.. ..++...+ ...+++.++++.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g----~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~---~~~e~~l~~l~~ 146 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQP---DNGEQALEIMEL 146 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCC----CeEEEEECCCChhHHHHHHcCCCHHHceeecC---CcHHHHHHHHHH
Confidence 35789999999999999999987653211 111111110000 00111 11222222 245666666665
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||.+..+.
T Consensus 147 l~~~---~~~~lVVIDsl~~l~ 165 (366)
T 1xp8_A 147 LVRS---GAIDVVVVDSVAALT 165 (366)
T ss_dssp HHTT---TCCSEEEEECTTTCC
T ss_pred HHhc---CCCCEEEEeChHHhc
Confidence 5432 346899999999875
|
| >1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A | Back alignment and structure |
|---|
Probab=94.63 E-value=0.041 Score=56.93 Aligned_cols=42 Identities=17% Similarity=0.434 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
....+|||||+|.+.... ...+..++...+....+|+.|..+
T Consensus 154 ~~~~~iViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~lSAT~ 196 (224)
T 1qde_A 154 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATM 196 (224)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESSC
T ss_pred hhCcEEEEcChhHHhhhhhHHHHHHHHHhCCccCeEEEEEeec
Confidence 556899999999875432 334555555545555555544433
|
| >1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A* | Back alignment and structure |
|---|
Probab=94.51 E-value=0.06 Score=56.68 Aligned_cols=28 Identities=29% Similarity=0.326 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCchHH-HHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKT-SCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKT-tlARaLAkeL~~ 469 (1152)
.+..+++|||.|+||| .+.+++.+....
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3457999999999999 888998887543
|
| >1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=94.46 E-value=0.34 Score=49.93 Aligned_cols=43 Identities=19% Similarity=0.482 Sum_probs=26.7
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 522 PSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....++|||||+|.+.. .....+..++...+.+..+|+.|..+
T Consensus 156 ~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 200 (220)
T 1t6n_A 156 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 200 (220)
T ss_dssp CTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCC
T ss_pred cccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeec
Confidence 35668999999998743 33445556666555455555554433
|
| >2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A | Back alignment and structure |
|---|
Probab=94.44 E-value=0.24 Score=50.28 Aligned_cols=43 Identities=19% Similarity=0.303 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++|||||+|.+.... ...+..++...+.+..+|+.|..+.
T Consensus 143 ~~~~~iViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 186 (207)
T 2gxq_A 143 SRVEVAVLDEADEMLSMGFEEEVEALLSATPPSRQTLLFSATLP 186 (207)
T ss_dssp TTCSEEEEESHHHHHHTTCHHHHHHHHHTSCTTSEEEEECSSCC
T ss_pred hhceEEEEEChhHhhccchHHHHHHHHHhCCccCeEEEEEEecC
Confidence 567899999999875432 3345555555555555555554443
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.41 E-value=0.15 Score=52.32 Aligned_cols=113 Identities=13% Similarity=0.192 Sum_probs=56.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH-HHHHHHHHHhhCCCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE-SILDLLDNMVTSRPP 522 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd-eIreLle~a~~~P~~ 522 (1152)
..++|.|++|+|||+++..|.............|.... .+ ....+..+|.++...+. .+...+.... ..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~~~~~~~~~~~~~~~----~~---~~~~~~l~Dt~G~~~~~~~~~~~~~~~~---~~ 82 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDSVRPTVVSQEPLSAA----DY---DGSGVTLVDFPGHVKLRYKLSDYLKTRA---KF 82 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSSCCCBCCCSSCEEET----TG---GGSSCEEEECCCCGGGTHHHHHHHHHHG---GG
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCeeeecCceEEE----Ee---eCceEEEEECCCcHHHHHHHHHHHHhcc---cc
Confidence 45899999999999999999765422111011111000 00 12234444544443322 2222222211 01
Q ss_pred CCceEEEEeCC-CCC-CHHHHHHHHHHHhh----CCCCEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDC-DTL-SPDSWSAISKVVDR----APRRVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEI-D~L-s~eaqnaLLklLEe----pp~~VifILaTN~~dk 566 (1152)
+..-++++|.. +.- .......+..++.. .+.++.+|++.|..|.
T Consensus 83 ~~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl 132 (218)
T 1nrj_B 83 VKGLIFMVDSTVDPKKLTTTAEFLVDILSITESSCENGIDILIACNKSEL 132 (218)
T ss_dssp EEEEEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTS
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHh
Confidence 23357778876 221 23344455555543 3456667777787763
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.28 E-value=0.27 Score=49.75 Aligned_cols=112 Identities=15% Similarity=0.162 Sum_probs=55.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc--cccCCCccceEEeCCCCCCCHHHH----HHHHHHHhh
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI--SHDRGKSRNIKEVGPVGNFDFESI----LDLLDNMVT 518 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~--~i~~g~~~dviEIdaas~~~vdeI----reLle~a~~ 518 (1152)
-++|.|++|+|||++++.+........ . .......... .+..+....+...|.++...+..+ ...+..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~--- 95 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMSPNE-T--LFLESTNKIYKDDISNSSFVNFQIWDFPGQMDFFDPTFDYEMIFRG--- 95 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCCGGG-G--GGCCCCCSCEEEEECCTTSCCEEEEECCSSCCTTCTTCCHHHHHHT---
T ss_pred EEEEECCCCCCHHHHHHHHHhcCCCcc-e--eeeccccceeeeeccCCCeeEEEEEECCCCHHHHhhhhhccccccc---
Confidence 589999999999999986654321110 0 0001110001 111122233444454443222211 122222
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---CCCCEEEEEEcCCCCcc
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR---APRRVVFILVSSSLDAL 567 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe---pp~~VifILaTN~~dkL 567 (1152)
+..-|+++|=-+. ..+....+..++.+ ...++.+|++.|..|.+
T Consensus 96 ----~~~~i~v~d~~~~-~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~ 142 (196)
T 3llu_A 96 ----TGALIYVIDAQDD-YMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGL 142 (196)
T ss_dssp ----CSEEEEEEETTSC-CHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGS
T ss_pred ----CCEEEEEEECCCc-hHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccC
Confidence 3445677775554 44555555555554 24567777888877743
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=94.27 E-value=0.028 Score=56.60 Aligned_cols=27 Identities=30% Similarity=0.381 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|++|+||||+++.|++.++.
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 31 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRL 31 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 457899999999999999999998864
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=94.14 E-value=0.028 Score=56.50 Aligned_cols=27 Identities=22% Similarity=0.285 Sum_probs=23.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+++.|++.++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~ 38 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLK 38 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCe
Confidence 358999999999999999999998644
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=94.12 E-value=0.029 Score=56.24 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+|++|+||||+++.|++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999887
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.10 E-value=0.026 Score=56.54 Aligned_cols=26 Identities=38% Similarity=0.554 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+|+.||+.++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~ 31 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV 31 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 37899999999999999999998754
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=94.07 E-value=0.03 Score=57.61 Aligned_cols=27 Identities=37% Similarity=0.550 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+||||+++.|++.+++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~ 52 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVP 52 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999998654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=94.04 E-value=0.026 Score=55.99 Aligned_cols=26 Identities=35% Similarity=0.549 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|+||+|+||||+++.|+..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35889999999999999999998764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=94.00 E-value=0.11 Score=57.92 Aligned_cols=27 Identities=26% Similarity=0.390 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++..||..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 357999999999999999999988753
|
| >3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A* | Back alignment and structure |
|---|
Probab=94.00 E-value=0.037 Score=58.36 Aligned_cols=42 Identities=17% Similarity=0.377 Sum_probs=26.1
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...++|||||+|.+... ....+..++...+....+|+.|..+
T Consensus 172 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~i~~SAT~ 214 (237)
T 3bor_A 172 KWIKMFVLDEADEMLSRGFKDQIYEIFQKLNTSIQVVLLSATM 214 (237)
T ss_dssp TTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSC
T ss_pred ccCcEEEECCchHhhccCcHHHHHHHHHhCCCCCeEEEEEEec
Confidence 45689999999976443 2334555555555555666555443
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.033 Score=55.33 Aligned_cols=26 Identities=35% Similarity=0.428 Sum_probs=24.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+++.|++.++..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~ 34 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLE 34 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 68999999999999999999998864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.94 E-value=0.029 Score=56.19 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.++|.|++|+||||+++.|++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=93.92 E-value=0.2 Score=52.00 Aligned_cols=23 Identities=30% Similarity=0.470 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.++|+||+|+||||+++.|.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 37899999999999999998764
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=93.91 E-value=0.04 Score=56.48 Aligned_cols=30 Identities=27% Similarity=0.376 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|+|++|+||||+|+.|++.++..
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 334478999999999999999999988754
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.035 Score=55.72 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+|+.|++.++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~ 30 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYT 30 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3468999999999999999999988643
|
| >3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=93.90 E-value=0.23 Score=56.20 Aligned_cols=88 Identities=15% Similarity=0.214 Sum_probs=45.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc------cccCCCc-cceEEeCCCCCCCHHHH-HHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI------SHDRGKS-RNIKEVGPVGNFDFESI-LDLLDN 515 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~------~i~~g~~-~dviEIdaas~~~vdeI-reLle~ 515 (1152)
..++|+||||+|||+++..++..+..... ...|.|...-. .-..|.. ..++...+ ...+++ .++++.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~--g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~---~~~E~~~l~i~~~ 103 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYP--DAVCLFYDSEFGITPAYLRSMGVDPERVIHTPV---QSLEQLRIDMVNQ 103 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCT--TCEEEEEESSCCCCHHHHHHTTCCGGGEEEEEC---SBHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCC--CceEEEEeccchhhHHHHHHhCCCHHHeEEEcC---CCHHHHHHHHHHH
Confidence 36899999999999998887766532100 01111100000 0001111 12222211 345565 555555
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ......+||||-+..|.
T Consensus 104 l~~i-~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 104 LDAI-ERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp HHTC-CTTCCEEEEEECSTTCB
T ss_pred HHHh-hccCceEEEEecccccc
Confidence 4211 22467999999999884
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=93.90 E-value=0.15 Score=57.45 Aligned_cols=30 Identities=23% Similarity=0.350 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|.||+|+|||++|..+|+.+++.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~ 37 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVE 37 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEE
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCc
Confidence 345678999999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=93.86 E-value=0.033 Score=56.06 Aligned_cols=26 Identities=35% Similarity=0.497 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+|+.|++.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 48899999999999999999998754
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.67 E-value=0.039 Score=55.45 Aligned_cols=27 Identities=33% Similarity=0.557 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+++.|++.++..
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~ 31 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFK 31 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 368999999999999999999988654
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=93.65 E-value=0.21 Score=56.63 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++++.++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999875
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=93.58 E-value=0.038 Score=54.72 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+|+.|++.++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 47899999999999999999998754
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=93.57 E-value=0.17 Score=58.67 Aligned_cols=24 Identities=25% Similarity=0.440 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|+||+|+|||++++.|+-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 347999999999999999987644
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=93.53 E-value=0.069 Score=54.89 Aligned_cols=30 Identities=23% Similarity=0.303 Sum_probs=26.1
Q ss_pred hCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 439 RRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 439 ~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
....+..+.|.||+|+||||+++.|+..+.
T Consensus 21 ~~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 21 LDQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp HTSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345566899999999999999999999986
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=93.52 E-value=0.041 Score=59.10 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+.|.||.|+||||++++|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468899999999999999998764
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=93.48 E-value=0.047 Score=55.09 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+|+.|++.++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 468999999999999999999988653
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=93.47 E-value=0.18 Score=56.89 Aligned_cols=27 Identities=33% Similarity=0.528 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|..||+.+++.
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~ 30 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGE 30 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEE
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccc
Confidence 468899999999999999999988754
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.045 Score=55.73 Aligned_cols=26 Identities=31% Similarity=0.488 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|.|++|+||||+|+.|++.++.
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999875
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=93.46 E-value=0.029 Score=60.21 Aligned_cols=28 Identities=29% Similarity=0.438 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..++|.|+||+||||+|+.|++.++
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3345799999999999999999999875
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.044 Score=55.41 Aligned_cols=27 Identities=15% Similarity=0.257 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+|+.|++.++..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~ 39 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFT 39 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 468999999999999999999998744
|
| >1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=93.45 E-value=0.34 Score=49.21 Aligned_cols=42 Identities=17% Similarity=0.362 Sum_probs=25.4
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....+|||||+|.+... ....+..++...+.+..+|+.|..+
T Consensus 145 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~ 187 (206)
T 1vec_A 145 DHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSATF 187 (206)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred ccCCEEEEEChHHhHhhCcHHHHHHHHHhCCccceEEEEEeeC
Confidence 56689999999976543 3345555555555444455544433
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=93.43 E-value=0.041 Score=56.40 Aligned_cols=28 Identities=29% Similarity=0.301 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+|+.|++.++..
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~ 45 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYP 45 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCE
Confidence 3468999999999999999999998643
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=93.42 E-value=0.15 Score=59.47 Aligned_cols=27 Identities=22% Similarity=0.171 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|.|+||+|||+++..++..+.
T Consensus 202 ~G~liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 202 RSDLIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999988764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.032 Score=55.77 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+|+.|++.++..
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~ 32 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGS 32 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 468999999999999999999988754
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=93.39 E-value=0.05 Score=54.43 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+|+.|++.++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 33 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4578999999999999999999987643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.36 E-value=0.25 Score=53.75 Aligned_cols=28 Identities=25% Similarity=0.326 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|.||+|+||||++++++..+..
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCCC
Confidence 3457899999999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=93.31 E-value=0.052 Score=56.48 Aligned_cols=28 Identities=25% Similarity=0.446 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|.|++|+||||+|+.|++.++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~ 31 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAA 31 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCce
Confidence 3468999999999999999999998754
|
| >3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus} | Back alignment and structure |
|---|
Probab=93.22 E-value=0.085 Score=62.00 Aligned_cols=24 Identities=8% Similarity=0.182 Sum_probs=20.6
Q ss_pred ceEEEEeCCCCCCHHHHHHHHHHH
Q 036794 525 YRIFVFDDCDTLSPDSWSAISKVV 548 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~eaqnaLLklL 548 (1152)
..+|||||+.+++...+..|+..+
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~ 258 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMS 258 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhC
Confidence 689999999999998888777665
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=93.19 E-value=0.092 Score=56.09 Aligned_cols=30 Identities=23% Similarity=0.328 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+..++|+||+|+||||+|+.|++.++..
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~ 56 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC 56 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 345678999999999999999999987643
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=93.17 E-value=0.036 Score=61.03 Aligned_cols=27 Identities=22% Similarity=0.287 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|+||+|+||||+|+.|++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345899999999999999999998763
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=93.14 E-value=0.056 Score=53.36 Aligned_cols=26 Identities=23% Similarity=0.381 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+|++|+||||+|+.|++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~ 27 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIP 27 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37899999999999999999988754
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=93.10 E-value=0.055 Score=54.99 Aligned_cols=27 Identities=37% Similarity=0.429 Sum_probs=23.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH-Hccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA-LNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke-L~~~ 470 (1152)
..++|+|++|+||||+++.|++. +++.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~ 38 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQ 38 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 46899999999999999999998 5543
|
| >3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.38 Score=52.97 Aligned_cols=41 Identities=20% Similarity=0.427 Sum_probs=25.5
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
..-++|||||+|.+.. .....+..++...+.++.+|+.+..
T Consensus 234 ~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT 276 (300)
T 3fmo_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSAT 276 (300)
T ss_dssp GGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESC
T ss_pred hhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEecc
Confidence 4568999999998764 2334455555555555555555443
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=93.02 E-value=0.058 Score=55.20 Aligned_cols=28 Identities=25% Similarity=0.474 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+++.|++.++..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999998754
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.27 Score=47.52 Aligned_cols=22 Identities=27% Similarity=0.394 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=93.00 E-value=0.68 Score=44.26 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14 | Back alignment and structure |
|---|
Probab=92.95 E-value=0.36 Score=52.16 Aligned_cols=37 Identities=5% Similarity=0.058 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
..+.+|+|||+..+.. ...|.+.+.+ .++.||++.-+
T Consensus 89 ~~~dvViIDEaQF~~~--v~el~~~l~~--~gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD--IVEFCEAMAN--AGKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT--HHHHHHHHHH--TTCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh--HHHHHHHHHh--CCCEEEEEecc
Confidence 3468999999999974 6677788877 56677777654
|
| >2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A* | Back alignment and structure |
|---|
Probab=92.94 E-value=0.27 Score=56.81 Aligned_cols=23 Identities=30% Similarity=0.261 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+|+++|+|+|||.++-.++..+
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~ 132 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINEL 132 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc
Confidence 38999999999999987777665
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=92.90 E-value=0.065 Score=55.07 Aligned_cols=28 Identities=29% Similarity=0.227 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..+.|.||+|+||||+++.|+..++.
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~ 55 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGL 55 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 3457899999999999999999998753
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=92.83 E-value=0.063 Score=53.52 Aligned_cols=27 Identities=33% Similarity=0.565 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||+++.|+..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~ 34 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHA 34 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCc
Confidence 346899999999999999999988753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=92.81 E-value=0.35 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999998753
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=92.78 E-value=0.063 Score=54.30 Aligned_cols=26 Identities=19% Similarity=0.447 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+++.|++.++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 47899999999999999999998753
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=92.77 E-value=0.2 Score=59.95 Aligned_cols=68 Identities=13% Similarity=0.201 Sum_probs=46.4
Q ss_pred eEEEEeCCCCCCHH----HHHHHHHHHhhCC-CCEEEEEEcCCCC--cchHHHHccce-EEEecCCChhHHHHHHH
Q 036794 526 RIFVFDDCDTLSPD----SWSAISKVVDRAP-RRVVFILVSSSLD--ALPHIIISRCQ-KFFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 526 kVVIIDEID~Ls~e----aqnaLLklLEepp-~~VifILaTN~~d--kL~~aL~SR~q-vI~F~~p~~~EI~eiL~ 593 (1152)
-+|||||+..+... ..+.|.++..... ..+.+|++|..+. .++..+++.+. +|-|...+..+...++.
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 48999999766432 2333444444433 4888999998886 57777877765 68888888777766553
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=92.69 E-value=0.5 Score=45.28 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998754
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=92.67 E-value=0.071 Score=54.57 Aligned_cols=28 Identities=32% Similarity=0.450 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|++|+||||+++.|++.++..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~ 36 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCAA 36 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4568999999999999999999998754
|
| >3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli} | Back alignment and structure |
|---|
Probab=92.65 E-value=0.097 Score=71.20 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+||+||||||||++|..|+.+.-
T Consensus 1082 ~~vll~G~~GtGKT~la~~~~~ea~ 1106 (2050)
T 3cmu_A 1082 RIVEIYGPESSGKTTLTLQVIAAAQ 1106 (2050)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999987653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.21 Score=48.68 Aligned_cols=22 Identities=27% Similarity=0.535 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=92.57 E-value=0.4 Score=46.18 Aligned_cols=22 Identities=27% Similarity=0.359 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998753
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=92.56 E-value=0.061 Score=56.04 Aligned_cols=27 Identities=15% Similarity=0.246 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+++.|++.++..
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~ 32 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLA 32 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 358999999999999999999998754
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=92.56 E-value=0.08 Score=55.82 Aligned_cols=27 Identities=30% Similarity=0.432 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+|+.|++.++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 43 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVC 43 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 468999999999999999999998754
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.53 E-value=0.37 Score=48.05 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.063 Score=56.21 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+|+.|++.++..
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~ 34 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELK 34 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 468999999999999999999987644
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=92.49 E-value=0.076 Score=54.26 Aligned_cols=26 Identities=15% Similarity=0.277 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|+|++|+||||+++.|++.++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999998764
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=92.48 E-value=0.22 Score=56.11 Aligned_cols=25 Identities=20% Similarity=0.223 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||++|..++...
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999998763
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=92.48 E-value=0.48 Score=45.35 Aligned_cols=22 Identities=23% Similarity=0.241 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=92.47 E-value=0.066 Score=53.98 Aligned_cols=24 Identities=29% Similarity=0.529 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|.||+|+||||+++.|+..
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CeEEEEECCCCCCHHHHHHHHHhc
Confidence 457899999999999999999875
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=92.46 E-value=8.6 Score=43.21 Aligned_cols=29 Identities=17% Similarity=0.131 Sum_probs=24.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
......+.|+|++|+||||++..|+..+.
T Consensus 76 ~~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 76 SGNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456789999999999999999998864
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.64 Score=45.55 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 5899999999999999998754
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=92.41 E-value=0.4 Score=46.16 Aligned_cols=22 Identities=27% Similarity=0.418 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=92.37 E-value=0.22 Score=48.75 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
|
| >1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23 | Back alignment and structure |
|---|
Probab=92.36 E-value=0.46 Score=51.25 Aligned_cols=34 Identities=18% Similarity=0.299 Sum_probs=23.3
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..+.+..++..+ ..|+.+|+|+|||.++-.++..
T Consensus 118 Q~~ai~~~l~~~----~~ll~~~tGsGKT~~~~~~~~~ 151 (282)
T 1rif_A 118 QKDAVFEGLVNR----RRILNLPTSAGRSLIQALLARY 151 (282)
T ss_dssp HHHHHHHHHHHS----EEEECCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC----CeEEEcCCCCCcHHHHHHHHHH
Confidence 334444444442 3578999999999998777664
|
| >2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.33 E-value=0.52 Score=49.17 Aligned_cols=40 Identities=18% Similarity=0.417 Sum_probs=24.5
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN 562 (1152)
....+|||||+|.+.... ...+..++...+....+|+.|.
T Consensus 170 ~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SA 210 (236)
T 2pl3_A 170 TDLQMLVLDEADRILDMGFADTMNAVIENLPKKRQTLLFSA 210 (236)
T ss_dssp TTCCEEEETTHHHHHHTTTHHHHHHHHHTSCTTSEEEEEES
T ss_pred ccccEEEEeChHHHhcCCcHHHHHHHHHhCCCCCeEEEEEe
Confidence 566799999999875432 3455556665554554444443
|
| >1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=92.27 E-value=0.61 Score=50.97 Aligned_cols=43 Identities=14% Similarity=0.346 Sum_probs=27.7
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~d 565 (1152)
....+|||||+|.+... ....+..++...+....+|+.|..+.
T Consensus 146 ~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 189 (367)
T 1hv8_A 146 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSATMP 189 (367)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSSCC
T ss_pred ccCCEEEEeCchHhhhhchHHHHHHHHHhCCCCceEEEEeeccC
Confidence 56689999999987433 23455566666555666666655443
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.27 E-value=0.97 Score=45.29 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998754
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=92.14 E-value=0.27 Score=62.60 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|+||.|.||||+.+.++..
T Consensus 673 g~i~~ItGPNGaGKSTlLr~i~~i 696 (918)
T 3thx_B 673 ERVMIITGPNMGGKSSYIKQVALI 696 (918)
T ss_dssp CCEEEEESCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCchHHHHHHHHHH
Confidence 347999999999999999998753
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=92.13 E-value=0.13 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.477 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||||+|||++|..++..+
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4579999999999999999998764
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=92.12 E-value=0.08 Score=55.21 Aligned_cols=26 Identities=15% Similarity=0.347 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+|+.|++.++..
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~~ 32 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGLA 32 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCce
Confidence 58899999999999999999998754
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.099 Score=54.12 Aligned_cols=40 Identities=23% Similarity=0.306 Sum_probs=30.0
Q ss_pred HHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 429 VAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 429 v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+++.|.+.+.. ...+..+.|.||+|+||||+++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44445444433 24456789999999999999999999886
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=92.11 E-value=0.097 Score=52.88 Aligned_cols=28 Identities=32% Similarity=0.412 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+..++|.|++|+||||+++.|+..+..
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999999864
|
| >3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A* | Back alignment and structure |
|---|
Probab=92.10 E-value=0.58 Score=51.71 Aligned_cols=43 Identities=21% Similarity=0.362 Sum_probs=26.6
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 522 PSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
.....+|||||+|.+.. .....+..++...+.+..+|+.|..+
T Consensus 143 ~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 187 (395)
T 3pey_A 143 LQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATF 187 (395)
T ss_dssp CTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred cccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecC
Confidence 35678999999998754 23334455555555555555555444
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=92.02 E-value=0.16 Score=58.15 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHH----hCCCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 425 GQNLVAQALSNAVM----RRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~----~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
..+.+++.+...+. .+... .++|.|++|+|||+++++|++.+++.+
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~-~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRV-CVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCE-EEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCee-EEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 33444444444443 44443 588999999999999999999987653
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=92.01 E-value=0.081 Score=54.87 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.|++|+||||+|+.|++.++..
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 7899999999999999999988643
|
| >2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A | Back alignment and structure |
|---|
Probab=91.93 E-value=0.53 Score=56.17 Aligned_cols=27 Identities=26% Similarity=0.354 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|++|+||||++..||..+..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~ 127 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQR 127 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 347899999999999999999987753
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=91.90 E-value=0.65 Score=46.25 Aligned_cols=23 Identities=17% Similarity=0.166 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||++...|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998643
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=91.87 E-value=0.19 Score=60.68 Aligned_cols=42 Identities=17% Similarity=0.386 Sum_probs=30.5
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+.+++++||.-. |.......+.+.|.+...+..+|++|++++
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~ 540 (582)
T 3b5x_A 498 DAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLS 540 (582)
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHH
Confidence 467999999854 566667777777776544666778888765
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.093 Score=54.37 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+.|.||+|+||||+++.|++.++..
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~ 32 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWH 32 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 368899999999999999999988643
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=91.84 E-value=0.096 Score=52.52 Aligned_cols=24 Identities=38% Similarity=0.520 Sum_probs=22.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.++|+|++|+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=91.83 E-value=0.15 Score=52.73 Aligned_cols=29 Identities=24% Similarity=0.291 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
...+..++|.|++|+||||+++.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34456789999999999999999999886
|
| >1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A | Back alignment and structure |
|---|
Probab=91.82 E-value=0.63 Score=51.63 Aligned_cols=42 Identities=17% Similarity=0.461 Sum_probs=26.7
Q ss_pred CCCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
.....+|||||+|.+.. .....+..++...+....+|+.|..
T Consensus 150 ~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT 193 (391)
T 1xti_A 150 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSAT 193 (391)
T ss_dssp CTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESS
T ss_pred ccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEee
Confidence 35678999999998864 3444566666655545555554433
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=91.81 E-value=0.099 Score=55.50 Aligned_cols=28 Identities=32% Similarity=0.463 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.||+|+||||+++.|++.++..
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~ 54 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQ 54 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 4578999999999999999999888643
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=91.78 E-value=0.11 Score=55.45 Aligned_cols=29 Identities=14% Similarity=0.265 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+..++|.||||+||+|.|+.|++.++..
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~ 56 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFN 56 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 34578899999999999999999998754
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=91.77 E-value=0.2 Score=51.69 Aligned_cols=41 Identities=20% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhC--CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 428 LVAQALSNAVMRR--KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 428 ~v~q~Lk~aL~~g--ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++.|.+.+... ..+..+.|+|++|+||||+++.|+..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4556666666543 3345789999999999999999998874
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=91.77 E-value=0.19 Score=57.86 Aligned_cols=30 Identities=23% Similarity=0.322 Sum_probs=25.2
Q ss_pred hCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 439 RRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 439 ~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.-..+..++|+||+|+||||++++++..+.
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 344556899999999999999999998764
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=91.69 E-value=0.26 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999754
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=91.67 E-value=0.25 Score=57.76 Aligned_cols=25 Identities=32% Similarity=0.501 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|.|++|+||||++..||..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998764
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.67 Score=44.54 Aligned_cols=22 Identities=27% Similarity=0.460 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999763
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=91.66 E-value=0.55 Score=63.23 Aligned_cols=84 Identities=24% Similarity=0.365 Sum_probs=47.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc------cccCC-CccceEEeCCCCCCCHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI------SHDRG-KSRNIKEVGPVGNFDFESILDLLDNM 516 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~------~i~~g-~~~dviEIdaas~~~vdeIreLle~a 516 (1152)
..++|+||||+|||++|..+|..+.... .+|.+...-. .-..+ ....++..+. ...+++.+.+..+
T Consensus 733 ~lVlI~G~PG~GKTtLal~lA~~aa~~g----~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~---~~leei~~~l~~l 805 (1706)
T 3cmw_A 733 RIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQP---DTGEQALEICDAL 805 (1706)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEECTTSCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCcHHHHHHHHHHHHHcC----CCeEEEeccchHHHHHHHHcCCChhheEEecC---CcHHHHHHHHHHH
Confidence 4799999999999999999988764321 0111100000 00001 1112333332 2456666666544
Q ss_pred hhCCCCCCceEEEEeCCCCCC
Q 036794 517 VTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls 537 (1152)
... ....+||||++..+.
T Consensus 806 v~~---~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 806 ARS---GAVDVIVVDSVAALT 823 (1706)
T ss_dssp HHH---TCCSEEEESCSTTCC
T ss_pred HHc---cCCCEEEEechhhhc
Confidence 322 345899999999986
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=91.64 E-value=0.1 Score=54.79 Aligned_cols=26 Identities=19% Similarity=0.479 Sum_probs=23.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+|+.|++.++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~ 27 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLA 27 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 37899999999999999999988643
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=91.62 E-value=0.08 Score=54.57 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|.||+|+||||+++.|++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 3589999999999999999998863
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=91.60 E-value=0.36 Score=60.69 Aligned_cols=24 Identities=25% Similarity=0.335 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||.|.||||+.+.++...
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHHH
Confidence 478999999999999999998754
|
| >1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A | Back alignment and structure |
|---|
Probab=91.58 E-value=1.6 Score=48.58 Aligned_cols=40 Identities=20% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCceEEEEeCCCCCCHHHHH-HHHHHHhhCCCCEEEEEEc
Q 036794 522 PSQYRIFVFDDCDTLSPDSWS-AISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~eaqn-aLLklLEepp~~VifILaT 561 (1152)
.....+|||||+|.+....+. .+..++...+....+|+.|
T Consensus 161 ~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~~~~~~~i~lS 201 (400)
T 1s2m_A 161 LSDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFS 201 (400)
T ss_dssp CTTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEE
T ss_pred cccCCEEEEeCchHhhhhchHHHHHHHHHhCCcCceEEEEE
Confidence 356789999999977654443 3444444444444444443
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=91.55 E-value=1.3 Score=52.13 Aligned_cols=27 Identities=15% Similarity=0.080 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|+||+|||++|..+|..+..
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTT
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHH
Confidence 457999999999999999999887643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=91.52 E-value=0.19 Score=62.88 Aligned_cols=25 Identities=28% Similarity=0.291 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||.|.||||+.+.++...
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~ 600 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIA 600 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHhhh
Confidence 3578999999999999999998764
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=91.47 E-value=0.12 Score=51.83 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+..+.|+|++|+||||+++.|+..+
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l 29 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYL 29 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34578899999999999999999987
|
| >4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A | Back alignment and structure |
|---|
Probab=91.46 E-value=0.16 Score=61.94 Aligned_cols=40 Identities=25% Similarity=0.263 Sum_probs=28.3
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++...+++..++... ...||.||||||||+++-.+...+.
T Consensus 191 N~~Q~~AV~~al~~~---~~~lI~GPPGTGKT~ti~~~I~~l~ 230 (646)
T 4b3f_X 191 DTSQKEAVLFALSQK---ELAIIHGPPGTGKTTTVVEIILQAV 230 (646)
T ss_dssp CHHHHHHHHHHHHCS---SEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhcCC---CceEEECCCCCCHHHHHHHHHHHHH
Confidence 566667777777543 3579999999999976655554443
|
| >3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B | Back alignment and structure |
|---|
Probab=91.46 E-value=0.45 Score=53.11 Aligned_cols=42 Identities=19% Similarity=0.433 Sum_probs=25.2
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
....+|||||+|.+.. .....+..++...+.+..+|+.|..+
T Consensus 167 ~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~ 210 (412)
T 3fht_A 167 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATF 210 (412)
T ss_dssp GGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCC
T ss_pred hhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeec
Confidence 4568999999997643 23334444555445555555555443
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.44 E-value=2.7 Score=45.75 Aligned_cols=25 Identities=16% Similarity=0.259 Sum_probs=21.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|.||+|+||||+.+.|+.....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~ 28 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVS 28 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5789999999999999999987643
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=91.41 E-value=0.31 Score=47.86 Aligned_cols=22 Identities=32% Similarity=0.477 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=91.34 E-value=0.11 Score=52.64 Aligned_cols=24 Identities=38% Similarity=0.731 Sum_probs=21.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|.||+|+||||+++.|+...
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHhccc
Confidence 358899999999999999998743
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=91.32 E-value=0.12 Score=54.48 Aligned_cols=26 Identities=35% Similarity=0.604 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.||||+||+|.|+.|++.++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~ 27 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFV 27 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCe
Confidence 36899999999999999999998754
|
| >3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.28 E-value=0.4 Score=51.10 Aligned_cols=40 Identities=20% Similarity=0.302 Sum_probs=24.1
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN 562 (1152)
....+|||||+|.+... ....+..++...+.+..+|+.|.
T Consensus 185 ~~~~~lViDEah~l~~~~~~~~l~~i~~~~~~~~~~l~~SA 225 (249)
T 3ber_A 185 RALKYLVMDEADRILNMDFETEVDKILKVIPRDRKTFLFSA 225 (249)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHSSCSSSEEEEEES
T ss_pred cccCEEEEcChhhhhccChHHHHHHHHHhCCCCCeEEEEec
Confidence 55689999999976543 23345555555444444444443
|
| >2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A | Back alignment and structure |
|---|
Probab=91.27 E-value=0.42 Score=55.37 Aligned_cols=17 Identities=35% Similarity=0.247 Sum_probs=15.0
Q ss_pred cEEEEEcCCCchHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCA 460 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlA 460 (1152)
..+|++||+|+|||.++
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 35899999999999976
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=91.17 E-value=0.69 Score=51.97 Aligned_cols=38 Identities=18% Similarity=0.293 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+...+.-.+..+. .++|.||+|+||||++++++..+.
T Consensus 159 ~~l~~l~~~i~~g~---~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 159 QAISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp HHHHHHHHHHHHTC---CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred HHHhhhhhhccCCC---EEEEECCCCCCHHHHHHHHhCCCc
Confidence 45566666666665 489999999999999999987754
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=91.15 E-value=0.31 Score=60.91 Aligned_cols=32 Identities=25% Similarity=0.341 Sum_probs=22.4
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 432 ~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+..++..+ ..+++.||+|+|||+++..+...
T Consensus 101 ~i~~~l~~~---~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 101 EFLKLYQNN---QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp HHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHH
T ss_pred HHHHHHhCC---CeEEEECCCCCCHHHHHHHHHHH
Confidence 334445444 35899999999999977666443
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=91.10 E-value=0.18 Score=49.38 Aligned_cols=22 Identities=23% Similarity=0.409 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999998653
|
| >3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.06 E-value=1.2 Score=46.69 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=25.3
Q ss_pred CCCceEEEEeCCCCCCH----HHHHHHHHHHhhC-CCCEE-EEEEcCCC
Q 036794 522 PSQYRIFVFDDCDTLSP----DSWSAISKVVDRA-PRRVV-FILVSSSL 564 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~----eaqnaLLklLEep-p~~Vi-fILaTN~~ 564 (1152)
....++|||||+|.+.. .....+..++... +.++. ++++++-+
T Consensus 173 ~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~ 221 (245)
T 3dkp_A 173 LASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFA 221 (245)
T ss_dssp CTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCC
T ss_pred cccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCC
Confidence 35678999999998865 3445555555542 23333 44444433
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=91.02 E-value=0.14 Score=52.12 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.|+|++|+||||+++.|++.++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~ 29 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVP 29 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 68899999999999999999988744
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=90.99 E-value=0.64 Score=44.99 Aligned_cols=20 Identities=30% Similarity=0.542 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 5 i~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999999853
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=90.97 E-value=0.12 Score=52.58 Aligned_cols=25 Identities=32% Similarity=0.448 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999999987
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=90.94 E-value=0.14 Score=53.20 Aligned_cols=27 Identities=33% Similarity=0.544 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..+.|.||+|+||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 345789999999999999999998753
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=90.93 E-value=0.14 Score=49.41 Aligned_cols=22 Identities=23% Similarity=0.374 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999764
|
| >3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.93 E-value=0.25 Score=51.32 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=25.6
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~ 563 (1152)
....++|||||+|.+.... ...+..++...+.+..+|+.|..
T Consensus 165 ~~~~~~lViDEah~~~~~~~~~~~~~i~~~~~~~~~~l~~SAT 207 (228)
T 3iuy_A 165 LRSITYLVIDEADKMLDMEFEPQIRKILLDVRPDRQTVMTSAT 207 (228)
T ss_dssp CTTCCEEEECCHHHHHHTTCHHHHHHHHHHSCSSCEEEEEESC
T ss_pred cccceEEEEECHHHHhccchHHHHHHHHHhCCcCCeEEEEEee
Confidence 3567899999999875432 33455555555545555554433
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=90.92 E-value=0.13 Score=52.15 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998753
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=90.86 E-value=1.1 Score=43.98 Aligned_cols=22 Identities=27% Similarity=0.483 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.85 E-value=0.81 Score=45.67 Aligned_cols=22 Identities=36% Similarity=0.514 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998764
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.24 Score=47.94 Aligned_cols=20 Identities=40% Similarity=0.708 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||++++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 37899999999999999885
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=90.84 E-value=3.2 Score=39.73 Aligned_cols=22 Identities=18% Similarity=0.185 Sum_probs=19.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL 467 (1152)
++|.|++|+|||+++..+...-
T Consensus 3 i~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999997653
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=90.83 E-value=0.58 Score=51.70 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..+.|.|+.|+||||++..+|..+..
T Consensus 98 ~~~i~i~g~~G~GKTT~~~~la~~~~~ 124 (295)
T 1ls1_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (295)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457888999999999999999988753
|
| >2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A* | Back alignment and structure |
|---|
Probab=90.82 E-value=0.49 Score=49.40 Aligned_cols=17 Identities=29% Similarity=0.319 Sum_probs=14.4
Q ss_pred EEEEEcCCCchHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCAR 461 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlAR 461 (1152)
.+++.+|+|+|||.++-
T Consensus 63 ~~l~~a~TGsGKT~~~~ 79 (230)
T 2oxc_A 63 DLIVQAKSGTGKTCVFS 79 (230)
T ss_dssp CEEEECCTTSSHHHHHH
T ss_pred CEEEECCCCCcHHHHHH
Confidence 37999999999998743
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=90.77 E-value=0.15 Score=51.92 Aligned_cols=25 Identities=40% Similarity=0.695 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.||+|+||||+++.|+..+
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3468899999999999999999874
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=90.77 E-value=2.3 Score=41.30 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=19.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|.|++|+|||+++..+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4589999999999999999864
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=90.77 E-value=1.1 Score=49.64 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..++|.|+||+|||++|..+|..+.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 3445899999999999999999987654
|
| >1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=90.73 E-value=0.47 Score=49.01 Aligned_cols=45 Identities=16% Similarity=0.366 Sum_probs=26.3
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEE-cCCCCcc
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILV-SSSLDAL 567 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILa-TN~~dkL 567 (1152)
...++|||||+|.+.... ...+..++...+.+..+|+. ++-+..+
T Consensus 149 ~~~~~lViDEah~~~~~~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~ 195 (219)
T 1q0u_A 149 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSATIPEKL 195 (219)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESCCCGGG
T ss_pred CcceEEEEcCchHHhhhChHHHHHHHHHhCCcccEEEEEecCCCHHH
Confidence 456799999999875432 33455556655545544444 4433333
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=90.73 E-value=0.4 Score=47.26 Aligned_cols=22 Identities=23% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999754
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=90.72 E-value=0.15 Score=51.75 Aligned_cols=25 Identities=36% Similarity=0.592 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..+.|.||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3468999999999999999998876
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.65 E-value=0.76 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-++|.|++|+|||+++..+...-
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 48999999999999999997653
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=90.65 E-value=0.32 Score=48.19 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999999764
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.61 E-value=0.68 Score=44.62 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999999864
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.58 E-value=1.8 Score=43.04 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.5
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|.|++|+|||+++..+...
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999764
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.32 Score=55.14 Aligned_cols=28 Identities=21% Similarity=0.111 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..++|.|+||+|||++|..+|..+.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a 71 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSAL 71 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4445899999999999999999988754
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.57 E-value=0.51 Score=49.60 Aligned_cols=23 Identities=26% Similarity=0.398 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 35899999999999999998753
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.47 E-value=0.36 Score=49.18 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 4899999999999999998653
|
| >3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.46 E-value=0.034 Score=59.88 Aligned_cols=41 Identities=17% Similarity=0.318 Sum_probs=25.1
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~ 563 (1152)
...++|||||+|.+.... ...+..++...+....+|+.|..
T Consensus 200 ~~l~~lViDEah~l~~~~~~~~l~~i~~~~~~~~q~l~~SAT 241 (262)
T 3ly5_A 200 KNLQCLVIDEADRILDVGFEEELKQIIKLLPTRRQTMLFSAT 241 (262)
T ss_dssp TTCCEEEECSHHHHHHTTCHHHHHHHHHHSCSSSEEEEECSS
T ss_pred ccCCEEEEcChHHHhhhhHHHHHHHHHHhCCCCCeEEEEEec
Confidence 567899999999875542 33455555555555555554433
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=90.34 E-value=0.34 Score=47.87 Aligned_cols=22 Identities=27% Similarity=0.371 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5799999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=90.31 E-value=1 Score=43.85 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999765
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.28 E-value=0.38 Score=48.45 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998643
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=90.28 E-value=0.32 Score=53.82 Aligned_cols=29 Identities=31% Similarity=0.432 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.||+|+||||+++.|+..+..
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 44557899999999999999999998864
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.26 E-value=0.08 Score=51.85 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCS
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998853
|
| >1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=90.26 E-value=0.58 Score=52.60 Aligned_cols=23 Identities=30% Similarity=0.264 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+|+.+|+|+|||..+-.++...
T Consensus 25 ~~ll~~~tG~GKT~~~~~~~~~~ 47 (494)
T 1wp9_A 25 NCLIVLPTGLGKTLIAMMIAEYR 47 (494)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47899999999999988876654
|
| >3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens} | Back alignment and structure |
|---|
Probab=90.23 E-value=0.65 Score=53.80 Aligned_cols=43 Identities=19% Similarity=0.444 Sum_probs=26.3
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++|||||+|.+.. .....+..++...+.++.+|+.+..+.
T Consensus 234 ~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~ 278 (479)
T 3fmp_B 234 KKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFE 278 (479)
T ss_dssp GGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCC
T ss_pred ccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCC
Confidence 5678999999997643 333444555555455555555554443
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=90.15 E-value=0.18 Score=53.90 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|+|++|+||||+|+.|++.++..
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3478999999999999999999988764
|
| >2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4} | Back alignment and structure |
|---|
Probab=90.15 E-value=0.78 Score=53.54 Aligned_cols=22 Identities=18% Similarity=0.306 Sum_probs=18.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+|++||+|+|||.++-.++..
T Consensus 130 ~~ll~~~tGsGKT~~~~~~~~~ 151 (510)
T 2oca_A 130 RRILNLPTSAGRSLIQALLARY 151 (510)
T ss_dssp EEEEECCSTTTHHHHHHHHHHH
T ss_pred CcEEEeCCCCCHHHHHHHHHHH
Confidence 4799999999999998766654
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=90.13 E-value=0.15 Score=52.18 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|+|++|+||||+++.|++ ++.
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~ 26 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGA 26 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTC
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCC
Confidence 478999999999999999998 653
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=90.11 E-value=0.28 Score=48.08 Aligned_cols=22 Identities=27% Similarity=0.360 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998654
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=90.09 E-value=1.9 Score=42.51 Aligned_cols=22 Identities=23% Similarity=0.270 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999988643
|
| >1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A* | Back alignment and structure |
|---|
Probab=89.95 E-value=0.73 Score=51.07 Aligned_cols=43 Identities=16% Similarity=0.419 Sum_probs=27.2
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~d 565 (1152)
....+|||||+|.+.... ...+..++...+....+|+.|..+.
T Consensus 161 ~~~~~vIiDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 204 (394)
T 1fuu_A 161 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSATMP 204 (394)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEECSSCC
T ss_pred hhCcEEEEEChHHhhCCCcHHHHHHHHHhCCCCceEEEEEEecC
Confidence 467899999999875432 3345555555555666666655443
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.94 E-value=0.46 Score=48.04 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 29 ~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 29 YKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999998753
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=89.91 E-value=0.28 Score=62.55 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||.|.||||+.+.++-.
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial~ 685 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGVI 685 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999543
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=89.91 E-value=0.15 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=20.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+.|+||+|+||||+++.|+. ++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 578999999999999999987 44
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=89.82 E-value=0.94 Score=45.32 Aligned_cols=22 Identities=27% Similarity=0.498 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=89.73 E-value=0.12 Score=52.86 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|.|++|+||||+++.|++.+..
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4789999999999999999999864
|
| >3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.69 E-value=0.67 Score=51.83 Aligned_cols=43 Identities=16% Similarity=0.370 Sum_probs=28.7
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~d 565 (1152)
...++|||||+|.+.... ...+..++...+.+..+|+.|..+.
T Consensus 182 ~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~ 225 (414)
T 3eiq_A 182 KYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATMP 225 (414)
T ss_dssp TTCCEEEECSHHHHHHTTTHHHHHHHHTTSCTTCEEEEECSCCC
T ss_pred ccCcEEEEECHHHhhccCcHHHHHHHHHhCCCCCeEEEEEEecC
Confidence 446899999999875433 3456666666666666666665543
|
| >2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=89.66 E-value=0.31 Score=59.95 Aligned_cols=25 Identities=16% Similarity=0.197 Sum_probs=21.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+|++|.|||+++-.++..+.
T Consensus 193 ~~~vlta~RGRGKSa~lG~~~a~~~ 217 (671)
T 2zpa_A 193 GVAAVTAARGRGKSALAGQLISRIA 217 (671)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred CeEEEecCCCCCHHHHHHHHHHHHH
Confidence 3579999999999999999988764
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=89.61 E-value=0.52 Score=46.90 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999999764
|
| >3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=89.57 E-value=0.33 Score=51.98 Aligned_cols=36 Identities=11% Similarity=0.169 Sum_probs=26.2
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
.+..+|+|||++.++.+....|..+. + .++.+|++.
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la-~--~gi~Vi~~G 135 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLS-A--DGHRVIVAG 135 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHH-H--TTCEEEEEE
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHH-H--CCCEEEEee
Confidence 45679999999999988777777766 3 245555554
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=89.45 E-value=0.22 Score=53.61 Aligned_cols=27 Identities=48% Similarity=0.708 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+.|.||+|+||||+++.|++.++..
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~ 36 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGAR 36 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999998754
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.36 E-value=0.38 Score=46.82 Aligned_cols=21 Identities=48% Similarity=0.634 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCccHHHHHHHHhc
Confidence 478999999999999998864
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=89.33 E-value=0.57 Score=54.83 Aligned_cols=27 Identities=19% Similarity=0.130 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|.|+||+|||++|..+|..+.
T Consensus 196 ~G~liiIaG~pG~GKTtlal~ia~~~a 222 (444)
T 3bgw_A 196 RRNFVLIAARPSMGKTAFALKQAKNMS 222 (444)
T ss_dssp SSCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCChHHHHHHHHHHHH
Confidence 345899999999999999999987754
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=89.32 E-value=1.8 Score=44.79 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..|...
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998643
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.31 E-value=0.98 Score=45.64 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=19.7
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4899999999999999999764
|
| >2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=89.30 E-value=0.44 Score=51.56 Aligned_cols=22 Identities=27% Similarity=0.208 Sum_probs=17.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+++.+|+|+|||.++-..+-.
T Consensus 33 ~~lv~~~TGsGKT~~~~~~~~~ 54 (337)
T 2z0m_A 33 NVVVRAKTGSGKTAAYAIPILE 54 (337)
T ss_dssp CEEEECCTTSSHHHHHHHHHHH
T ss_pred CEEEEcCCCCcHHHHHHHHHHh
Confidence 3799999999999877655443
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=89.28 E-value=0.15 Score=57.96 Aligned_cols=29 Identities=28% Similarity=0.344 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+..++|.||+|+|||+++..||+.+++..
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~~ei 68 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFPLEV 68 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSCEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCCCcE
Confidence 45789999999999999999999987653
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=89.27 E-value=0.93 Score=44.04 Aligned_cols=22 Identities=36% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4889999999999999998743
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=89.24 E-value=0.6 Score=45.12 Aligned_cols=22 Identities=27% Similarity=0.291 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999998754
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.24 E-value=0.42 Score=48.36 Aligned_cols=22 Identities=23% Similarity=0.366 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998743
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=89.23 E-value=0.4 Score=47.83 Aligned_cols=22 Identities=23% Similarity=0.312 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...|...
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998653
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.21 E-value=0.57 Score=48.19 Aligned_cols=22 Identities=32% Similarity=0.455 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999764
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=89.20 E-value=0.24 Score=50.83 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..+.|.||.|+||||+++.|+..+.
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999999999876
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=89.17 E-value=0.59 Score=46.96 Aligned_cols=22 Identities=27% Similarity=0.413 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=89.07 E-value=0.17 Score=54.91 Aligned_cols=43 Identities=26% Similarity=0.342 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++..+.-.+.....+..+.|.|++|+||||+++.|++.++..
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 3444444444441112348899999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=89.05 E-value=3.4 Score=41.34 Aligned_cols=22 Identities=14% Similarity=0.191 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999887654
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=88.95 E-value=0.87 Score=46.35 Aligned_cols=23 Identities=22% Similarity=0.160 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999998764
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=88.93 E-value=0.24 Score=51.58 Aligned_cols=25 Identities=28% Similarity=0.288 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||+|+|||+++..++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999998887654
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=88.92 E-value=4 Score=45.61 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|+|++|+||||++..||..+..
T Consensus 105 ~~vI~ivG~~G~GKTT~~~~LA~~l~~ 131 (320)
T 1zu4_A 105 LNIFMLVGVNGTGKTTSLAKMANYYAE 131 (320)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 347999999999999999999988754
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.86 E-value=0.36 Score=47.94 Aligned_cols=22 Identities=27% Similarity=0.380 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998654
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=88.74 E-value=0.73 Score=45.76 Aligned_cols=23 Identities=26% Similarity=0.299 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||++...|...
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35789999999999999999753
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=88.73 E-value=0.57 Score=47.48 Aligned_cols=22 Identities=27% Similarity=0.404 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998754
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=88.72 E-value=0.46 Score=55.35 Aligned_cols=40 Identities=18% Similarity=0.295 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
....|...+ . .....++|+||+|+||||+.++++..++..
T Consensus 155 ~~~~L~~l~-~-~~ggii~I~GpnGSGKTTlL~allg~l~~~ 194 (418)
T 1p9r_A 155 NHDNFRRLI-K-RPHGIILVTGPTGSGKSTTLYAGLQELNSS 194 (418)
T ss_dssp HHHHHHHHH-T-SSSEEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHH-H-hcCCeEEEECCCCCCHHHHHHHHHhhcCCC
Confidence 344455553 2 344578999999999999999999988643
|
| >2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A | Back alignment and structure |
|---|
Probab=88.65 E-value=0.57 Score=57.11 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=18.2
Q ss_pred HhhCCCCCCceEEEEeCCCCCCHHH
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLSPDS 540 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls~ea 540 (1152)
+...+......+|||||+|.+....
T Consensus 269 l~~~~~l~~~~~iViDEah~~~~~~ 293 (618)
T 2whx_A 269 LLSSTRVPNYNLIVMDEAHFTDPCS 293 (618)
T ss_dssp HHHCSSCCCCSEEEEESTTCCSHHH
T ss_pred HhccccccCCeEEEEECCCCCCccH
Confidence 3334455778999999999996543
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=88.61 E-value=0.79 Score=53.31 Aligned_cols=27 Identities=26% Similarity=0.260 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|+|+||+|||++|..+|..+.
T Consensus 199 ~G~l~ii~G~pg~GKT~lal~ia~~~a 225 (444)
T 2q6t_A 199 PGSLNIIAARPAMGKTAFALTIAQNAA 225 (444)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999988754
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=88.41 E-value=8.3 Score=43.23 Aligned_cols=28 Identities=18% Similarity=0.228 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..+.|.||+|+||||+.+.|+..+.
T Consensus 53 ~~g~~v~i~G~~GaGKSTLl~~l~g~~~ 80 (337)
T 2qm8_A 53 GRAIRVGITGVPGVGKSTTIDALGSLLT 80 (337)
T ss_dssp CCSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhh
Confidence 3455789999999999999999998764
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=88.28 E-value=0.29 Score=52.51 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.||+|+||||+++.|++.++..
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~ 54 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWR 54 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 3468899999999999999999887754
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=88.25 E-value=0.36 Score=48.07 Aligned_cols=22 Identities=23% Similarity=0.335 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999754
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=88.24 E-value=0.7 Score=45.73 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-++|.|++|+|||++++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 47999999999999998776543
|
| >2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A | Back alignment and structure |
|---|
Probab=88.20 E-value=0.54 Score=57.61 Aligned_cols=42 Identities=14% Similarity=0.199 Sum_probs=25.6
Q ss_pred CCceEEEEeCCCCCCH----HHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSP----DSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~----eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
...++|||||+|.+.. .....++..+.....++.+|+.|..+
T Consensus 137 ~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~~~ii~lSATl 182 (702)
T 2p6r_A 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSATA 182 (702)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECCC
T ss_pred hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcCceEEEECCCc
Confidence 5678999999998743 23445555554333455555555443
|
| >2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1 | Back alignment and structure |
|---|
Probab=88.17 E-value=3.1 Score=54.39 Aligned_cols=39 Identities=23% Similarity=0.123 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLA 464 (1152)
.|..++..+...+..++.. .+|++||.|+|||.+|-..+
T Consensus 607 ~Q~~ai~~il~~~~~g~p~-d~ll~~~TGsGKT~val~aa 645 (1151)
T 2eyq_A 607 DQAQAINAVLSDMCQPLAM-DRLVCGDVGFGKTEVAMRAA 645 (1151)
T ss_dssp HHHHHHHHHHHHHHSSSCC-EEEEECCCCTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcC-cEEEECCCCCCHHHHHHHHH
Confidence 4666666666666555432 47999999999998876444
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.14 E-value=1.5 Score=44.33 Aligned_cols=22 Identities=27% Similarity=0.504 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998643
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=88.13 E-value=0.29 Score=49.55 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..+.|+|++|+||||+++.|++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC
Confidence 346899999999999999999986
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=88.11 E-value=0.29 Score=50.82 Aligned_cols=26 Identities=23% Similarity=0.388 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.|+|++|+||||+++.|++.+++.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~ 39 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAH 39 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCE
Confidence 67899999999999999999987654
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=88.05 E-value=6.9 Score=37.54 Aligned_cols=22 Identities=23% Similarity=0.330 Sum_probs=19.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.-++|.|++|+|||+++..+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHhc
Confidence 3589999999999999999865
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=88.03 E-value=1.1 Score=45.80 Aligned_cols=22 Identities=36% Similarity=0.551 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4899999999999999998764
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=88.02 E-value=0.48 Score=56.08 Aligned_cols=26 Identities=19% Similarity=0.295 Sum_probs=22.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.||+|+|||+++..++......
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~~~~ 178 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNIAQE 178 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhhhhc
Confidence 47899999999999999998876543
|
| >2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9 | Back alignment and structure |
|---|
Probab=87.88 E-value=2.9 Score=48.87 Aligned_cols=27 Identities=22% Similarity=0.333 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|+.|+||||++-.||..+..
T Consensus 100 ~~vI~ivG~~GvGKTT~a~~LA~~l~~ 126 (433)
T 2xxa_A 100 PAVVLMAGLQGAGKTTSVGKLGKFLRE 126 (433)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 458899999999999999999988764
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=87.85 E-value=9.3 Score=42.88 Aligned_cols=29 Identities=28% Similarity=0.375 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.||+|+||||+++.|+..+..
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~ 155 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKN 155 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 34568999999999999999999988753
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=87.84 E-value=0.73 Score=45.30 Aligned_cols=21 Identities=24% Similarity=0.297 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 488999999999999999874
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=87.78 E-value=0.3 Score=52.81 Aligned_cols=26 Identities=27% Similarity=0.395 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||+|+|||+++..|+..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 34789999999999999999998654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.71 E-value=0.72 Score=47.39 Aligned_cols=21 Identities=43% Similarity=0.540 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 589999999999999999864
|
| >2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A | Back alignment and structure |
|---|
Probab=87.63 E-value=0.45 Score=57.92 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=27.6
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++.....+..++. ...+|+.||||||||+++..+...+.
T Consensus 182 n~~Q~~av~~~l~----~~~~li~GppGTGKT~~~~~~i~~l~ 220 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLA 220 (624)
T ss_dssp CHHHHHHHHHHHT----CSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhc----CCCeEEECCCCCCHHHHHHHHHHHHH
Confidence 3444455555443 24689999999999999888877654
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.60 E-value=0.37 Score=50.77 Aligned_cols=28 Identities=25% Similarity=0.504 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.|++|+||||+++.|++.++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~ 43 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFT 43 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCc
Confidence 3468999999999999999999988744
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=87.58 E-value=0.56 Score=47.04 Aligned_cols=22 Identities=18% Similarity=0.297 Sum_probs=4.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988754
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=87.58 E-value=0.31 Score=50.45 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|+|++|+||||+++.|+. ++.
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~ 29 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGI 29 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCC
Confidence 4688999999999999999987 543
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=87.57 E-value=0.41 Score=46.79 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 4889999999999999998753
|
| >2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=87.55 E-value=0.73 Score=56.48 Aligned_cols=20 Identities=30% Similarity=0.363 Sum_probs=16.7
Q ss_pred cEEEEEcCCCchHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIF 463 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaL 463 (1152)
..+|++||+|+|||+++-..
T Consensus 47 ~~~lv~apTGsGKT~~~~l~ 66 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEMG 66 (715)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHHH
Confidence 45899999999999998443
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=87.54 E-value=0.48 Score=47.75 Aligned_cols=21 Identities=29% Similarity=0.308 Sum_probs=18.8
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 479999999999999998864
|
| >4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A* | Back alignment and structure |
|---|
Probab=87.28 E-value=0.74 Score=48.46 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||+++..+..
T Consensus 16 ivlvGd~~VGKTsLi~r~~~ 35 (216)
T 4dkx_A 16 LVFLGEQSVGKTSLITRFMY 35 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19 | Back alignment and structure |
|---|
Probab=87.26 E-value=0.2 Score=53.01 Aligned_cols=18 Identities=28% Similarity=0.290 Sum_probs=14.8
Q ss_pred EEEEEcCCCchHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARa 462 (1152)
.+++.+|+|+|||.++-.
T Consensus 62 ~~l~~a~TGsGKT~~~~~ 79 (253)
T 1wrb_A 62 DIMACAQTGSGKTAAFLI 79 (253)
T ss_dssp CEEEECCTTSSHHHHHHH
T ss_pred CEEEECCCCChHHHHHHH
Confidence 378999999999986543
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=87.24 E-value=6.4 Score=38.89 Aligned_cols=25 Identities=20% Similarity=0.216 Sum_probs=20.9
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
+...-++|.|++|+|||++...+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3344689999999999999999874
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=87.23 E-value=0.39 Score=50.98 Aligned_cols=27 Identities=30% Similarity=0.433 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|++|+||||+++.|++.+..
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 456899999999999999999999864
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=87.22 E-value=0.33 Score=50.08 Aligned_cols=25 Identities=24% Similarity=0.401 Sum_probs=21.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||+|+||||+++.|...+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3578999999999999999988753
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=87.22 E-value=0.3 Score=50.12 Aligned_cols=24 Identities=25% Similarity=0.398 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+.|+|++|+||||+++.|++.+
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 468899999999999999999875
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=87.16 E-value=0.57 Score=47.80 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=18.7
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..|..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~ 47 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTD 47 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhc
Confidence 489999999999999998864
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=87.14 E-value=0.54 Score=46.92 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..|...
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 35899999999999999999763
|
| >2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A | Back alignment and structure |
|---|
Probab=87.11 E-value=0.89 Score=53.03 Aligned_cols=16 Identities=31% Similarity=0.266 Sum_probs=14.3
Q ss_pred cEEEEEcCCCchHHHH
Q 036794 444 LLYVFYGPHGTGKTSC 459 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtl 459 (1152)
..+|+.+|+|+|||++
T Consensus 22 ~~vlv~a~TGsGKT~~ 37 (459)
T 2z83_A 22 QMTVLDLHPGSGKTRK 37 (459)
T ss_dssp CEEEECCCTTSCTTTT
T ss_pred CcEEEECCCCCCHHHH
Confidence 4689999999999986
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=87.10 E-value=0.26 Score=59.48 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=30.1
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+.+++++||.-. |.......+.+.|.+...+..+|++|++++.
T Consensus 498 ~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~ 541 (582)
T 3b60_A 498 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLST 541 (582)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGG
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHH
Confidence 367999999854 5666666777777664335667888887763
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=87.03 E-value=0.4 Score=49.85 Aligned_cols=24 Identities=38% Similarity=0.494 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+..++|+|+||+|||++|..++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 457999999999999999887654
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=86.94 E-value=0.97 Score=45.39 Aligned_cols=23 Identities=22% Similarity=0.424 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999998764
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=86.93 E-value=0.32 Score=48.93 Aligned_cols=20 Identities=35% Similarity=0.517 Sum_probs=17.7
Q ss_pred CcEEEEEcCCCchHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARa 462 (1152)
+..+.|.||+|+||||+++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHH
Confidence 34689999999999999994
|
| >2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A | Back alignment and structure |
|---|
Probab=86.89 E-value=0.6 Score=54.30 Aligned_cols=23 Identities=22% Similarity=0.440 Sum_probs=16.9
Q ss_pred hhCCCCCCceEEEEeCCCCCCHH
Q 036794 517 VTSRPPSQYRIFVFDDCDTLSPD 539 (1152)
Q Consensus 517 ~~~P~~a~~kVVIIDEID~Ls~e 539 (1152)
...+.....++|||||+|.+...
T Consensus 103 ~~~~~l~~~~~iViDEah~~~~~ 125 (451)
T 2jlq_A 103 LSSTRVPNYNLIVMDEAHFTDPC 125 (451)
T ss_dssp HHCSCCCCCSEEEEETTTCCSHH
T ss_pred hCcccccCCCEEEEeCCccCCcc
Confidence 33445567899999999998543
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=86.84 E-value=0.47 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.282 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999765
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=86.83 E-value=0.32 Score=50.24 Aligned_cols=22 Identities=27% Similarity=0.415 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998654
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=86.81 E-value=0.45 Score=45.89 Aligned_cols=21 Identities=24% Similarity=0.388 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999999874
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=86.77 E-value=0.34 Score=55.04 Aligned_cols=27 Identities=33% Similarity=0.517 Sum_probs=24.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|+.||+.+++.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~ 34 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGE 34 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEE
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCc
Confidence 468999999999999999999998743
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=86.77 E-value=2.3 Score=45.63 Aligned_cols=31 Identities=23% Similarity=0.240 Sum_probs=23.6
Q ss_pred HHHHhCCCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 435 NAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 435 ~aL~~gri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.....+.....++|.|++|+|||++...|..
T Consensus 31 ~~~~~~~~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 31 NLKQEDVNSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp HHHHTTCCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred HHhhcCCCCeEEEEECCCCCCHHHHHHHHhC
Confidence 3334444445789999999999999999874
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=86.74 E-value=0.52 Score=47.69 Aligned_cols=22 Identities=23% Similarity=0.375 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4799999999999999998653
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=86.74 E-value=6.6 Score=39.00 Aligned_cols=22 Identities=23% Similarity=0.324 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=86.71 E-value=2.7 Score=42.49 Aligned_cols=22 Identities=41% Similarity=0.634 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4789999999999999998753
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=86.65 E-value=0.35 Score=49.92 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.1
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.|+|++|+|||++++.|++.++..
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~~ 30 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSMI 30 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 57899999999999999999987643
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=86.53 E-value=8.4 Score=45.27 Aligned_cols=23 Identities=17% Similarity=0.225 Sum_probs=20.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.++|.|++|+|||++...|...-
T Consensus 226 kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 226 KVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999998763
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=86.51 E-value=0.15 Score=52.18 Aligned_cols=20 Identities=25% Similarity=0.316 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||+++..|.
T Consensus 13 ki~vvG~~~~GKSsli~~l~ 32 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVL 32 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCT
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58899999999999998875
|
| >1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A* | Back alignment and structure |
|---|
Probab=86.46 E-value=1.2 Score=51.83 Aligned_cols=17 Identities=29% Similarity=0.190 Sum_probs=14.9
Q ss_pred cEEEEEcCCCchHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCA 460 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlA 460 (1152)
..+|+.||+|+|||.++
T Consensus 9 ~~vlv~a~TGSGKT~~~ 25 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRF 25 (440)
T ss_dssp CEEEECCCTTSSTTTTH
T ss_pred CCEEEEcCCCCCHHHHH
Confidence 46899999999999975
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=86.44 E-value=0.26 Score=52.29 Aligned_cols=25 Identities=24% Similarity=0.268 Sum_probs=22.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|.||+|+|||++|..|++...
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999988754
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=86.40 E-value=0.29 Score=48.18 Aligned_cols=22 Identities=23% Similarity=0.237 Sum_probs=19.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999988753
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=86.39 E-value=0.43 Score=50.15 Aligned_cols=25 Identities=16% Similarity=0.264 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||+|+||||+++.|++...
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998753
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=86.34 E-value=0.45 Score=47.91 Aligned_cols=27 Identities=22% Similarity=0.415 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+..+.|.||.|+||||++++|+..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 334578999999999999999999988
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.27 E-value=0.39 Score=48.24 Aligned_cols=22 Identities=23% Similarity=0.368 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4899999999999999988754
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=86.23 E-value=0.66 Score=52.21 Aligned_cols=45 Identities=20% Similarity=0.293 Sum_probs=31.5
Q ss_pred cCcHHHHHHHHHHHHhC---CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 424 VGQNLVAQALSNAVMRR---KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~g---ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+|.......+...+... ..+..+.|.||+|+||||+++.|+..+.
T Consensus 70 ~~~~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 70 VTARQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hcchHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444444444444443 2344788999999999999999998875
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=86.20 E-value=0.58 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.391 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4899999999999999998753
|
| >3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A | Back alignment and structure |
|---|
Probab=86.12 E-value=1.4 Score=46.30 Aligned_cols=42 Identities=19% Similarity=0.226 Sum_probs=26.1
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~ 563 (1152)
....++|||||+|.+.... ...+..++...+.+..+|+.|..
T Consensus 174 ~~~~~~lViDEah~l~~~~~~~~~~~i~~~~~~~~q~~~~SAT 216 (242)
T 3fe2_A 174 LRRTTYLVLDEADRMLDMGFEPQIRKIVDQIRPDRQTLMWSAT 216 (242)
T ss_dssp CTTCCEEEETTHHHHHHTTCHHHHHHHHTTSCSSCEEEEEESC
T ss_pred cccccEEEEeCHHHHhhhCcHHHHHHHHHhCCccceEEEEEee
Confidence 3566899999999876543 34555556655555555554433
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=86.11 E-value=0.44 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=21.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+.|.||+|+||||++++|+..+
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 468899999999999999999876
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=86.09 E-value=0.49 Score=48.57 Aligned_cols=45 Identities=18% Similarity=0.181 Sum_probs=33.6
Q ss_pred ccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 423 LVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 423 LVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+-++......+...+...+. ..++|.|++|+|||+++..|+..+.
T Consensus 11 l~~~~~~~~~~~~~~~~~~~-~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 11 LAENKRLAEKNREALRESGT-VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp CHHHHHHHHHHHHHHHHHTC-EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred HhhcHHHHHHHHHhhcccCc-eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 33455666666666655544 4688999999999999999988763
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=86.09 E-value=0.49 Score=50.24 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=23.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+-|.||.|+||||+++.|+..++.
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~ 51 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQ 51 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhch
Confidence 46889999999999999999998753
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=86.04 E-value=0.26 Score=49.48 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||++...+...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35899999999999999998764
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=85.92 E-value=0.42 Score=48.68 Aligned_cols=22 Identities=23% Similarity=0.221 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998754
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=85.74 E-value=1.8 Score=52.70 Aligned_cols=158 Identities=13% Similarity=0.140 Sum_probs=0.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEe----CCCCCCCHHHHHHHHHHHhhCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEV----GPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEI----daas~~~vdeIreLle~a~~~P 520 (1152)
.+.|.||.|+||||++++|+..+................-..........+.+. -...........++++.+....
T Consensus 380 iv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~~~~~i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l~~ 459 (608)
T 3j16_B 380 ILVMMGENGTGKTTLIKLLAGALKPDEGQDIPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRIDD 459 (608)
T ss_dssp EEEEESCTTSSHHHHHHHHHTSSCCSBCCCCCSCCEEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTSTT
T ss_pred EEEEECCCCCcHHHHHHHHhcCCCCCCCcCccCCcEEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCChh
Q ss_pred CCCC----------------------ceEEEEeCCCC-CCHHHHHHHHHHHhhC--CCCEEEEEEcCCCCcchHHHHccc
Q 036794 521 PPSQ----------------------YRIFVFDDCDT-LSPDSWSAISKVVDRA--PRRVVFILVSSSLDALPHIIISRC 575 (1152)
Q Consensus 521 ~~a~----------------------~kVVIIDEID~-Ls~eaqnaLLklLEep--p~~VifILaTN~~dkL~~aL~SR~ 575 (1152)
.... ..|+++||.-. |.......+.++|.+. .....+|++|.+.+ +...+-.|.
T Consensus 460 ~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrv 538 (608)
T 3j16_B 460 IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKV 538 (608)
T ss_dssp TSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEE
T ss_pred hhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHH-HHHHhCCEE
Q ss_pred eEEE------ecCCChhHHHHHHHHHHHHcCCCC
Q 036794 576 QKFF------FPKMKDADIIYTLQWIASKEGIEI 603 (1152)
Q Consensus 576 qvI~------F~~p~~~EI~eiL~~iakkeGl~I 603 (1152)
.++. ...-+++++..-........++.+
T Consensus 539 ivl~~~~g~~~~~g~p~~~~~~~~~~~~~~~~~~ 572 (608)
T 3j16_B 539 IVFEGIPSKNAHARAPESLLTGCNRFLKNLNVTF 572 (608)
T ss_dssp EECEEETTTEEECCCCEEHHHHHHHHHHHHTCCB
T ss_pred EEEeCCCCeEEecCChHHHhhhhhHHHHhcCcee
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=85.65 E-value=0.31 Score=51.02 Aligned_cols=24 Identities=29% Similarity=0.523 Sum_probs=15.7
Q ss_pred cEEEEEcCCCchHHHHHHHHH-HHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFA-RAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLA-keL 467 (1152)
..+.|.||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 468899999999999999998 764
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=85.61 E-value=2.4 Score=46.94 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.|++|+||||++..+|..+.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~ 123 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYK 123 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999998875
|
| >2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A | Back alignment and structure |
|---|
Probab=85.60 E-value=2.6 Score=47.23 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=26.4
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~~ 564 (1152)
...++|||||+|.+.... ...+..++...+....+|+.|..+
T Consensus 178 ~~~~~vViDEah~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~ 220 (410)
T 2j0s_A 178 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISATL 220 (410)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESCC
T ss_pred hheeEEEEccHHHHHhhhhHHHHHHHHHhCccCceEEEEEcCC
Confidence 456899999999765433 345566666555555555555443
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=85.48 E-value=0.41 Score=50.18 Aligned_cols=23 Identities=26% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+.|.||+|+||||+++.|+..+
T Consensus 25 ~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 25 PLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57899999999999999999865
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=85.46 E-value=1.4 Score=47.51 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=19.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.++|.|.+|+|||++...|...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999654
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=85.46 E-value=6.5 Score=43.37 Aligned_cols=119 Identities=16% Similarity=0.187 Sum_probs=55.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCH-HHHHHHHHH-HhhCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF-ESILDLLDN-MVTSRPP 522 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~v-deIreLle~-a~~~P~~ 522 (1152)
.+.|.|.+|+||||+...|...-... ....|.........+.......+..+|.++.... ..+.+.+.. +...-..
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~~~i--vs~~~~tTr~~i~~i~~~~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ 86 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVKVAP--ISPRPQTTRKRLRGILTEGRRQIVFVDTPGLHKPMDALGEFMDQEVYEALAD 86 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSCCSC--CCSSSCCCCSCEEEEEEETTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCceee--ecCCCCceeEEEEEEEEeCCcEEEEecCccccchhhHHHHHHHHHHHHHHhc
Confidence 47899999999999999986431111 0111111111111111112233445565554321 122222221 1111122
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
++.-++++|=-+.+... ...++..+.+...++.+|++.|..|.
T Consensus 87 ad~il~VvD~~~~~~~~-~~~i~~~l~~~~~~~p~ilV~NK~Dl 129 (301)
T 1wf3_A 87 VNAVVWVVDLRHPPTPE-DELVARALKPLVGKVPILLVGNKLDA 129 (301)
T ss_dssp CSEEEEEEETTSCCCHH-HHHHHHHHGGGTTTSCEEEEEECGGG
T ss_pred CCEEEEEEECCCCCChH-HHHHHHHHHhhcCCCCEEEEEECccc
Confidence 45566777765555544 34455556553223445566666553
|
| >1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19 | Back alignment and structure |
|---|
Probab=85.38 E-value=3.6 Score=51.54 Aligned_cols=40 Identities=25% Similarity=0.286 Sum_probs=29.4
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.|..++..+...+..+... .+|+.||.|+|||.++-..+-
T Consensus 372 ~Q~~ai~~I~~~l~~~~~~-~~Ll~a~TGSGKTlvall~il 411 (780)
T 1gm5_A 372 AQKRAHQEIRNDMISEKPM-NRLLQGDVGSGKTVVAQLAIL 411 (780)
T ss_dssp HHHHHHHHHHHHHHSSSCC-CCEEECCSSSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhhccccCCC-cEEEEcCCCCCHHHHHHHHHH
Confidence 4777788777776655433 378999999999998765543
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=85.35 E-value=6.6 Score=44.09 Aligned_cols=24 Identities=21% Similarity=0.205 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
...++|.|++|+|||++...++..
T Consensus 167 ~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 167 IPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357899999999999999998653
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=85.29 E-value=0.42 Score=46.89 Aligned_cols=22 Identities=23% Similarity=0.202 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999988753
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=85.27 E-value=0.48 Score=56.66 Aligned_cols=44 Identities=14% Similarity=0.062 Sum_probs=33.4
Q ss_pred cHHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 426 QNLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++.+.|.+... ..+.+..++|.|.+|+||||+|++||+.++.
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 3566666665542 2334467999999999999999999999985
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=85.25 E-value=0.9 Score=50.77 Aligned_cols=28 Identities=25% Similarity=0.275 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
-..+..+.|.||+|+||||++++|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3445678999999999999999999987
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.18 E-value=0.92 Score=46.06 Aligned_cols=20 Identities=30% Similarity=0.524 Sum_probs=18.1
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||+++..+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999884
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=85.14 E-value=0.53 Score=51.48 Aligned_cols=25 Identities=28% Similarity=0.424 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|+|++|+||||+|+.|+ .+++
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~ 100 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGA 100 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCC
Confidence 468999999999999999999 4553
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=85.05 E-value=1.9 Score=42.73 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999753
|
| >2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A | Back alignment and structure |
|---|
Probab=84.98 E-value=0.71 Score=58.03 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=27.5
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++.....+..++. ...+|+.||||||||+++..++..+.
T Consensus 358 n~~Q~~Av~~~l~----~~~~lI~GppGTGKT~ti~~~i~~l~ 396 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ----RPLSLIQGPPGTGKTVTSATIVYHLA 396 (800)
T ss_dssp CHHHHHHHHHHHT----SSEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcc----CCeEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3444455555443 24689999999999999888877664
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=84.92 E-value=2.1 Score=50.58 Aligned_cols=115 Identities=12% Similarity=0.107 Sum_probs=47.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc-cccccCCCccceEEeCCCCCCCHHHHHHHHHH-----Hhh
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS-CISHDRGKSRNIKEVGPVGNFDFESILDLLDN-----MVT 518 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~-c~~i~~g~~~dviEIdaas~~~vdeIreLle~-----a~~ 518 (1152)
.++|.|++|+|||++...|...-... ....|...... ...+... ...+..+|.++... ..+.++. ...
T Consensus 235 kV~ivG~~nvGKSSLln~L~~~~~a~--vs~~~gtT~d~~~~~i~~~-g~~l~liDT~G~~~---~~~~ve~~gi~~~~~ 308 (476)
T 3gee_A 235 STVIAGKPNAGKSTLLNTLLGQERAI--VSHMPGTTRDYIEECFIHD-KTMFRLTDTAGLRE---AGEEIEHEGIRRSRM 308 (476)
T ss_dssp EEEEECCTTSSHHHHHHHCC--------------------CEEEEET-TEEEEEEC-----------------------C
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCcc--cCCCCCceEEEEEEEEEEC-CeEEEEEECCCCCc---chhHHHHHHHHHHHh
Confidence 48999999999999999987541110 00011000000 0001111 12345555544322 2222222 111
Q ss_pred CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
.-..++.-++++|--+............+++... +..+|++.|..|.
T Consensus 309 ~~~~aD~vl~VvD~s~~~s~~~~~~~~~~l~~l~-~~piIvV~NK~Dl 355 (476)
T 3gee_A 309 KMAEADLILYLLDLGTERLDDELTEIRELKAAHP-AAKFLTVANKLDR 355 (476)
T ss_dssp CCSSCSEEEEEEETTTCSSGGGHHHHHHHHHHCT-TSEEEEEEECTTS
T ss_pred hcccCCEEEEEEECCCCcchhhhHHHHHHHHhcC-CCCEEEEEECcCC
Confidence 2223455677788666555433334444555433 4556666676663
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=84.87 E-value=0.24 Score=50.66 Aligned_cols=23 Identities=22% Similarity=0.267 Sum_probs=19.8
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.-++|.|++|+|||+++..+...
T Consensus 31 ~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999888753
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=84.78 E-value=0.52 Score=54.81 Aligned_cols=27 Identities=26% Similarity=0.396 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.||+|+|||++|..||+.++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~ 29 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGE 29 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEE
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCe
Confidence 468899999999999999999998754
|
| >2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus} | Back alignment and structure |
|---|
Probab=84.70 E-value=2.8 Score=51.61 Aligned_cols=20 Identities=25% Similarity=0.529 Sum_probs=15.9
Q ss_pred CCCCCceEEEEeCCCCCCHH
Q 036794 520 RPPSQYRIFVFDDCDTLSPD 539 (1152)
Q Consensus 520 P~~a~~kVVIIDEID~Ls~e 539 (1152)
+.....++|||||+|.+...
T Consensus 328 ~~l~~l~lvViDEaH~~~~~ 347 (673)
T 2wv9_A 328 LRVPNYNLFVMDEAHFTDPA 347 (673)
T ss_dssp SCCCCCSEEEEESTTCCCHH
T ss_pred cccccceEEEEeCCcccCcc
Confidence 44567899999999999543
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=84.68 E-value=0.52 Score=50.21 Aligned_cols=28 Identities=18% Similarity=0.239 Sum_probs=25.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
..+.|.|++|+|||++|+.||+.+++..
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 3789999999999999999999998764
|
| >2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=84.56 E-value=0.6 Score=53.81 Aligned_cols=42 Identities=12% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCceEEEEeCCCCCCHHH-HHHHHHHHhh---CCCCEEEEEEcCC
Q 036794 522 PSQYRIFVFDDCDTLSPDS-WSAISKVVDR---APRRVVFILVSSS 563 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~ea-qnaLLklLEe---pp~~VifILaTN~ 563 (1152)
....++|||||+|.+.... ...+.+++.. .+..-+++++++-
T Consensus 201 l~~~~~lVlDEah~~~~~gf~~~~~~i~~~~~~~~~~q~l~~SAT~ 246 (434)
T 2db3_A 201 FEDTRFVVLDEADRMLDMGFSEDMRRIMTHVTMRPEHQTLMFSATF 246 (434)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHCTTSCSSCEEEEEESCC
T ss_pred cccCCeEEEccHhhhhccCcHHHHHHHHHhcCCCCCceEEEEeccC
Confidence 3566899999999875432 2344444443 3334444455443
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=84.47 E-value=0.47 Score=47.35 Aligned_cols=22 Identities=27% Similarity=0.315 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999998754
|
| >2aya_A DNA polymerase III subunit TAU; KH-fold, C-terminus of polymerase III TAU subunit, transferase; HET: DNA; NMR {Escherichia coli} | Back alignment and structure |
|---|
Probab=84.43 E-value=2.7 Score=41.02 Aligned_cols=72 Identities=15% Similarity=0.191 Sum_probs=52.1
Q ss_pred HHHHHHHHHhccchHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhHHHhHHHHHHHHHHHhCCcEEEEEEEec
Q 036794 869 EIWLEVLNRIQNNGTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKAEKFKDQILQAFESVLGSPLTIEIRCES 944 (1152)
Q Consensus 869 ~iW~~vl~~~~~~~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~e~~~~~Ie~~~~~vlg~~v~v~i~~~~ 944 (1152)
+-|..++.++.-..+-.-|..++ .+... ...+.+.+.....-...+..+..|+.+|...||.+|+|.|.+..
T Consensus 24 d~W~~lv~~L~l~gl~~qLA~ns-~~~~~---~~~~~L~l~~~~~hL~~~~~~~~L~~ALs~~~G~~v~L~i~~g~ 95 (128)
T 2aya_A 24 DPWAAQVSQLSLPKLVEQVALNA-WKEES---DNAVCLHLRSSQRHLNNRGAQQKLAEALSMLKGSTVELTIVEDD 95 (128)
T ss_dssp CHHHHHHHHHTCCSHHHHHHHTE-EEEEC---SSEEEEEECGGGTTTCCHHHHHHHHHHHHHHHSSCCEEEEEECC
T ss_pred CcHHHHHHHcCCcHHHHHHHHHH-hhhee---CCEEEEEECHHHHHhCCHHHHHHHHHHHHHHHCCCEEEEEEECC
Confidence 45999999998554444445566 54442 35788888865433345667899999999999999999987643
|
| >2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A* | Back alignment and structure |
|---|
Probab=84.42 E-value=0.53 Score=57.01 Aligned_cols=33 Identities=24% Similarity=0.196 Sum_probs=22.6
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLA 464 (1152)
.|..++..+. .++ .+|+.+|+|+|||.+....+
T Consensus 48 ~Q~~~i~~il----~g~---d~lv~~pTGsGKTl~~~lpa 80 (591)
T 2v1x_A 48 LQLETINVTM----AGK---EVFLVMPTGGGKSLCYQLPA 80 (591)
T ss_dssp THHHHHHHHH----TTC---CEEEECCTTSCTTHHHHHHH
T ss_pred HHHHHHHHHH----cCC---CEEEEECCCChHHHHHHHHH
Confidence 4666665543 232 37899999999998765444
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.37 E-value=0.46 Score=49.09 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..|...
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4799999999999999998753
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=84.21 E-value=0.56 Score=46.87 Aligned_cols=25 Identities=20% Similarity=0.347 Sum_probs=22.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+|+||.|+|||+++++|.-.+..
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHcC
Confidence 6789999999999999999887763
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=84.13 E-value=1 Score=46.39 Aligned_cols=41 Identities=22% Similarity=0.318 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+...+.+...+...+. ..++|.|.+|+|||+++..++....
T Consensus 23 ~~~a~~~r~~~~~~~~-~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 23 KRLADKNRKLLNKHGV-VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp HHHHHHHHHHHHHTTC-EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCC-eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3455666666555443 4678899999999999999988764
|
| >3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A | Back alignment and structure |
|---|
Probab=83.97 E-value=0.28 Score=60.58 Aligned_cols=17 Identities=35% Similarity=0.499 Sum_probs=14.8
Q ss_pred cEEEEEcCCCchHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCA 460 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlA 460 (1152)
..+|+.||+|+|||+.|
T Consensus 156 k~vlv~apTGSGKT~~a 172 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHA 172 (677)
T ss_dssp EEEEEECCTTSSHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 47899999999999854
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=83.76 E-value=0.6 Score=48.58 Aligned_cols=24 Identities=13% Similarity=0.149 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+.++||+|++|+|||++|..+.+.
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 357999999999999999999874
|
| >2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A* | Back alignment and structure |
|---|
Probab=83.74 E-value=0.68 Score=55.27 Aligned_cols=28 Identities=29% Similarity=0.318 Sum_probs=24.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|+|.||+||||+|+.|++.++..
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~ 62 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWI 62 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 3478999999999999999999998754
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=83.72 E-value=0.68 Score=47.46 Aligned_cols=26 Identities=19% Similarity=0.186 Sum_probs=23.0
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|.|++|+||||++..++..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 46899999999999999999998753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=83.67 E-value=3.8 Score=44.13 Aligned_cols=20 Identities=20% Similarity=0.321 Sum_probs=17.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
.+++.|++|+|||++...|.
T Consensus 10 ~I~vvG~~g~GKSTLin~L~ 29 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLF 29 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 58999999999999998863
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=83.64 E-value=0.56 Score=48.84 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=25.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
..+.|.|+.|+|||++++.||+.++..+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 46899999999999999999999987643
|
| >3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A | Back alignment and structure |
|---|
Probab=83.58 E-value=3.3 Score=48.90 Aligned_cols=20 Identities=30% Similarity=0.174 Sum_probs=16.0
Q ss_pred CcEEEEEcCCCchHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARa 462 (1152)
...+|+.+|+|+|||.++-.
T Consensus 111 ~~~~lv~apTGsGKTl~~~l 130 (563)
T 3i5x_A 111 DHDVIARAKTGTGKTFAFLI 130 (563)
T ss_dssp SEEEEEECCTTSCHHHHHHH
T ss_pred CCeEEEECCCCCCccHHHHH
Confidence 34689999999999986543
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=83.49 E-value=1.1 Score=57.81 Aligned_cols=22 Identities=23% Similarity=0.309 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLA 464 (1152)
+..++|+||.|.||||+.+.++
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHH
Confidence 4679999999999999999993
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=83.39 E-value=3.6 Score=40.14 Aligned_cols=22 Identities=23% Similarity=0.240 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||+++..+...
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=83.01 E-value=0.74 Score=54.95 Aligned_cols=39 Identities=18% Similarity=0.112 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++..|...+..+. .++|.||+|+||||++++++..+.
T Consensus 247 ~~~l~~l~~~v~~g~---~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 247 SGVLAYLWLAIEHKF---SAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp HHHHHHHHHHHHTTC---CEEEEESTTSSHHHHHHHHGGGSC
T ss_pred HHHHHHHHHHHhCCC---EEEEECCCCCCHHHHHHHHHhhCC
Confidence 456677777777654 389999999999999999987664
|
| >2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=83.00 E-value=0.78 Score=57.66 Aligned_cols=38 Identities=29% Similarity=0.385 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 427 NLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 427 e~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+.....+..++. ...+|+.||||||||+++..+...+.
T Consensus 363 ~~Q~~Av~~~l~----~~~~lI~GppGTGKT~~i~~~i~~l~ 400 (802)
T 2xzl_A 363 SSQSNAVSHVLQ----RPLSLIQGPPGTGKTVTSATIVYHLS 400 (802)
T ss_dssp HHHHHHHHHHTT----CSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc----CCCEEEECCCCCCHHHHHHHHHHHHH
Confidence 444444444432 34689999999999998877766553
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=82.96 E-value=0.75 Score=47.10 Aligned_cols=25 Identities=36% Similarity=0.369 Sum_probs=22.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.|++|+||||++..+...+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 4689999999999999999998764
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=82.85 E-value=0.78 Score=51.21 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.||+|+||||+++.|+..+..
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 34557889999999999999999998764
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=82.80 E-value=0.66 Score=51.24 Aligned_cols=25 Identities=28% Similarity=0.286 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|+||||+|||++|..++...
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999998763
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=82.79 E-value=0.73 Score=52.61 Aligned_cols=27 Identities=26% Similarity=0.359 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.||+|+||||++++++..+..
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~~~ 162 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYINQ 162 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcCc
Confidence 447899999999999999999998764
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=82.75 E-value=0.77 Score=51.01 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=23.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+.|.||.|+||||+++.|+..+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~ 126 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKN 126 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999998753
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=82.70 E-value=0.84 Score=50.81 Aligned_cols=27 Identities=26% Similarity=0.399 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..+.|.||.|+||||+++.|+..+..
T Consensus 102 g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 102 GRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 458899999999999999999988754
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.66 E-value=0.44 Score=47.98 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
-++|.|++|+|||++...+...
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999988743
|
| >1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A* | Back alignment and structure |
|---|
Probab=82.64 E-value=2.8 Score=49.75 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=22.4
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHH
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLA 464 (1152)
.|.+++..+. .++ .+|+.+|+|+|||.++...+
T Consensus 29 ~Q~~~i~~il----~g~---d~lv~apTGsGKTl~~~lp~ 61 (523)
T 1oyw_A 29 GQEEIIDTVL----SGR---DCLVVMPTGGGKSLCYQIPA 61 (523)
T ss_dssp THHHHHHHHH----TTC---CEEEECSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCC---CEEEECCCCcHHHHHHHHHH
Confidence 4666655443 333 37899999999998765544
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=82.57 E-value=0.66 Score=48.92 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.|++|+||||+++.|++.+.
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 4588999999999999999999974
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=82.57 E-value=4.4 Score=46.09 Aligned_cols=22 Identities=23% Similarity=0.131 Sum_probs=19.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+.|.|++|+||||+...|...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4789999999999999999754
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=82.52 E-value=0.66 Score=56.76 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+..++|+|.+|+||||+|+.|++.+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999999998
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=82.48 E-value=4.4 Score=47.31 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..++|.|+.|+||||++..||..+..
T Consensus 98 ~~vi~i~G~~GsGKTT~~~~LA~~l~~ 124 (425)
T 2ffh_A 98 RNLWFLVGLQGSGKTTTAAKLALYYKG 124 (425)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 457889999999999999999998754
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=82.45 E-value=0.78 Score=55.51 Aligned_cols=30 Identities=27% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
++.+..++|+|++|+||||+|++|++.++.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~ 422 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQ 422 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcc
Confidence 344567999999999999999999999874
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=82.40 E-value=2.8 Score=48.81 Aligned_cols=23 Identities=17% Similarity=0.199 Sum_probs=20.0
Q ss_pred EEEEEcCCCchHHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.+.|.||+|+||||+++.|+...
T Consensus 33 ~I~lvG~sGaGKSTLln~L~g~~ 55 (418)
T 2qag_C 33 TLMVVGESGLGKSTLINSLFLTD 55 (418)
T ss_dssp EEEEECCTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 46899999999999999997653
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=82.40 E-value=0.75 Score=55.42 Aligned_cols=43 Identities=30% Similarity=0.376 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 427 NLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 427 e~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+...+..... ....+..+.|.|++|+||||++++|+..+..
T Consensus 352 peV~~vLR~~~~~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~ 395 (552)
T 3cr8_A 352 PEVLAELHRQTPPRERQGFTVFFTGLSGAGKSTLARALAARLME 395 (552)
T ss_dssp HHHHHHHHHHSCCGGGSCEEEEEEESSCHHHHHHHHHHHHHHHT
T ss_pred cchhhhhhhhcccccccceEEEEECCCCChHHHHHHHHHHhhcc
Confidence 344444444331 1233457899999999999999999999873
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=82.36 E-value=4 Score=43.17 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=19.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..++|.|++|+|||++...|..
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhC
Confidence 4689999999999999998864
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=82.33 E-value=3.6 Score=45.27 Aligned_cols=22 Identities=14% Similarity=0.217 Sum_probs=19.8
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.+.|.|++|+||||+..+|...
T Consensus 10 ~VaIvG~~nvGKSTLln~L~g~ 31 (301)
T 1ega_A 10 FIAIVGRPNVGKSTLLNKLLGQ 31 (301)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999754
|
| >2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.30 E-value=2.8 Score=53.99 Aligned_cols=18 Identities=22% Similarity=0.193 Sum_probs=15.7
Q ss_pred EEEEEcCCCchHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARI 462 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARa 462 (1152)
.+|+.+|+|+|||.++..
T Consensus 103 ~vLV~apTGSGKTlva~l 120 (1010)
T 2xgj_A 103 SVLVSAHTSAGKTVVAEY 120 (1010)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred CEEEECCCCCChHHHHHH
Confidence 589999999999998744
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=82.26 E-value=3.7 Score=45.31 Aligned_cols=29 Identities=24% Similarity=0.361 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHhCCcEEEEEEEecccccc
Q 036794 921 KDQILQAFESVLGSPLTIEIRCESKIDTQ 949 (1152)
Q Consensus 921 ~~~Ie~~~~~vlg~~v~v~i~~~~~~d~~ 949 (1152)
...-..-|+++||++|.+.+.+.-+++-+
T Consensus 267 ~~~ar~~~~~~~~~~v~l~l~vkv~~~w~ 295 (308)
T 3iev_A 267 GKRARQELELILGRPVYLELWVKVVPDWR 295 (308)
T ss_dssp HHHHHHHHHHHHTSCEEEEEEEEECTTGG
T ss_pred HHHHHHHHHHHhCCceEEEEEEEECCCcc
Confidence 34445667888999999998887777654
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=82.12 E-value=2.8 Score=43.73 Aligned_cols=20 Identities=45% Similarity=0.712 Sum_probs=18.0
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||++...+.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~ 58 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFA 58 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 37899999999999998875
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=82.09 E-value=0.46 Score=52.35 Aligned_cols=25 Identities=16% Similarity=0.401 Sum_probs=19.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|+||+|+||||+|+.|++.++
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg 30 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFR 30 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999876
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=82.09 E-value=0.84 Score=48.14 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..+.|.|++|+||||.++.|++.+...
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~ 33 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRER 33 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 4568899999999999999999998743
|
| >2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A* | Back alignment and structure |
|---|
Probab=82.03 E-value=0.78 Score=56.40 Aligned_cols=18 Identities=28% Similarity=0.193 Sum_probs=15.9
Q ss_pred cEEEEEcCCCchHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCAR 461 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlAR 461 (1152)
..+|++||+|+|||+++.
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 468999999999999884
|
| >2e0g_A Chromosomal replication initiator protein DNAA; domain structure, structural genomics, NPPSFA; NMR {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=81.81 E-value=2.8 Score=39.33 Aligned_cols=73 Identities=18% Similarity=0.276 Sum_probs=52.8
Q ss_pred HHHHHHHHHhccc----hHHHHHHhcCeEeEEecCCCCeEEEEeCCchhhhhH-HHhHHHHHHHHHHHhCCc-EEEEEEE
Q 036794 869 EIWLEVLNRIQNN----GTKEFLYREGKLISVSFGAAPTVQLTFRSHLTKSKA-EKFKDQILQAFESVLGSP-LTIEIRC 942 (1152)
Q Consensus 869 ~iW~~vl~~~~~~----~l~~~l~~~gkl~s~~~~~~~~v~l~F~~~~~~~~~-e~~~~~Ie~~~~~vlg~~-v~v~i~~ 942 (1152)
++|.+||+.++.. ..+..+ ..-++ .+.. .++.|...+...+.-. +++...|+.++..++|.+ +.|.|.+
T Consensus 3 ~~W~~vl~~Lk~~l~~~~f~tWi-~pl~~-~~~~---~~l~l~vPn~F~~~wie~~y~~~I~~~l~~~~g~~~~~i~~~v 77 (107)
T 2e0g_A 3 SLWQQCLARLQDELPATEFSMWI-RPLQA-ELSD---NTLALYAPNRFVLDWVRDKYLNNINGLLTSFCGADAPQLRFEV 77 (107)
T ss_dssp CHHHHHHHHHHHHCSCCHHHHTT-TTSEE-EECS---SEEEEEESSHHHHHHHHHTHHHHHHHHHHHHTSSSCCEECCEE
T ss_pred HHHHHHHHHHHHHCCHHHHHHHH-HhCcC-cccC---CEEEEEeCCHHHHHHHHHHHHHHHHHHHHHHhCCCceeEEEEE
Confidence 3799999999743 123334 34455 4433 5789999999888864 457999999999999987 7888777
Q ss_pred eccc
Q 036794 943 ESKI 946 (1152)
Q Consensus 943 ~~~~ 946 (1152)
..+.
T Consensus 78 ~~~~ 81 (107)
T 2e0g_A 78 GTKP 81 (107)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 5433
|
| >3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ... | Back alignment and structure |
|---|
Probab=81.78 E-value=3.1 Score=51.26 Aligned_cols=40 Identities=25% Similarity=0.532 Sum_probs=25.9
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhh---CCCCEEEEEEcC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDR---APRRVVFILVSS 562 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEe---pp~~VifILaTN 562 (1152)
.+.++|||||+|++.......|..+++. .....+|++.++
T Consensus 317 ~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SAT 359 (666)
T 3o8b_A 317 GAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATAT 359 (666)
T ss_dssp TSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEESS
T ss_pred CcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECCC
Confidence 4578999999999987764444444444 334445655554
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=81.67 E-value=2.8 Score=42.16 Aligned_cols=20 Identities=20% Similarity=0.242 Sum_probs=18.3
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||+++..+.
T Consensus 31 ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 31 RILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999884
|
| >3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=81.60 E-value=1.8 Score=56.20 Aligned_cols=21 Identities=19% Similarity=0.107 Sum_probs=17.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
.+|++||+|+|||.++-..+.
T Consensus 201 dvLV~ApTGSGKTlva~l~i~ 221 (1108)
T 3l9o_A 201 SVLVSAHTSAGKTVVAEYAIA 221 (1108)
T ss_dssp CEEEECCSSSHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHH
Confidence 489999999999988755443
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=81.53 E-value=2.3 Score=46.12 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.++|.|.+|+|||++..+|...
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=81.46 E-value=0.91 Score=50.17 Aligned_cols=28 Identities=21% Similarity=0.441 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+..+.|.||+|+||||+++.|+..+.
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3345788999999999999999998875
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=80.73 E-value=1 Score=54.07 Aligned_cols=43 Identities=28% Similarity=0.370 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHH-hCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 427 NLVAQALSNAVM-RRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 427 e~v~q~Lk~aL~-~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.++...|..... .++.+..++|+|++|+||||+|+.|++.++.
T Consensus 355 ~eV~~~lr~~~~~~~~~~~~I~l~G~~GsGKSTia~~La~~L~~ 398 (546)
T 2gks_A 355 PEVAEILAETYVPKHKQGFCVWLTGLPCAGKSTIAEILATMLQA 398 (546)
T ss_dssp HHHHHHHHHHSCCGGGCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHhhccccccceEEEccCCCCCCHHHHHHHHHHHhhh
Confidence 455555555542 2344567899999999999999999998874
|
| >4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A | Back alignment and structure |
|---|
Probab=80.69 E-value=1.5 Score=56.40 Aligned_cols=22 Identities=18% Similarity=0.012 Sum_probs=16.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
..+|+.+|+|+|||+++.....
T Consensus 55 ~~vlv~apTGsGKTlv~~~~i~ 76 (997)
T 4a4z_A 55 DSVFVAAHTSAGKTVVAEYAIA 76 (997)
T ss_dssp CEEEEECCTTSCSHHHHHHHHH
T ss_pred CCEEEEECCCCcHHHHHHHHHH
Confidence 3589999999999986544433
|
| >2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A* | Back alignment and structure |
|---|
Probab=80.62 E-value=6.3 Score=48.64 Aligned_cols=23 Identities=13% Similarity=0.179 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCchHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
...++|.|++|+|||++..+|..
T Consensus 69 ~~~V~VvG~~naGKSSLlNaLlg 91 (695)
T 2j69_A 69 VFRLLVLGDMKRGKSTFLNALIG 91 (695)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 34589999999999999999974
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=80.59 E-value=0.83 Score=49.15 Aligned_cols=26 Identities=19% Similarity=0.405 Sum_probs=22.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+=|.|+||+||||.|+.|++.++...
T Consensus 11 ~~~~G~pGsGKsT~a~~L~~~~g~~~ 36 (230)
T 3gmt_A 11 LILLGAPGAGKGTQANFIKEKFGIPQ 36 (230)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred eeeECCCCCCHHHHHHHHHHHhCCCe
Confidence 56899999999999999999987553
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=80.35 E-value=0.43 Score=63.07 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.|.||.|+||||+++.|.+.+.
T Consensus 445 ~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 445 QTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp CEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred cEEEEEecCCCcHHHHHHHhccccc
Confidence 4688999999999999999987643
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=80.32 E-value=1 Score=50.84 Aligned_cols=27 Identities=19% Similarity=0.251 Sum_probs=23.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+.|.||+|+||||+++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 358899999999999999999987643
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=80.28 E-value=4.5 Score=44.52 Aligned_cols=21 Identities=29% Similarity=0.467 Sum_probs=18.4
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||++...+..
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~ 25 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFS 25 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999998754
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=80.27 E-value=1.1 Score=47.70 Aligned_cols=29 Identities=28% Similarity=0.436 Sum_probs=25.4
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..+..+.|.|++|+||||+++.+++.+..
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 34567899999999999999999999875
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=80.24 E-value=1.4 Score=50.03 Aligned_cols=35 Identities=26% Similarity=0.403 Sum_probs=27.5
Q ss_pred HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 431 QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 431 q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+.-.+..|. .++|.||+|+||||++++++..+.
T Consensus 166 ~~l~~~i~~G~---~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 166 SFLRRAVQLER---VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp HHHHHHHHTTC---CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHhcCC---EEEEECCCCCCHHHHHHHHHhcCC
Confidence 45555566554 489999999999999999987654
|
| >1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A | Back alignment and structure |
|---|
Probab=80.16 E-value=1 Score=52.81 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|.|.+|+||||+++.|++.++..
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~~~ 66 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLNFI 66 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 3478999999999999999999998754
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=80.09 E-value=0.87 Score=46.46 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.|.|++|+||||+++.|+..+..
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999999999998764
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=80.06 E-value=0.37 Score=49.57 Aligned_cols=21 Identities=33% Similarity=0.441 Sum_probs=18.2
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
-++|.|++|+|||+++..+..
T Consensus 17 ki~v~G~~~~GKSsli~~~~~ 37 (221)
T 3gj0_A 17 KLVLVGDGGTGKTTFVKRHLT 37 (221)
T ss_dssp EEEEEECTTSSHHHHHTTBHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999998443
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=80.01 E-value=1.1 Score=51.31 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+..+.|.||.|+||||+++.|+..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~ 183 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKN 183 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccc
Confidence 348999999999999999999998753
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1152 | ||||
| d1njfa_ | 239 | c.37.1.20 (A:) delta prime subunit of DNA polymera | 4e-46 | |
| d1sxjd2 | 237 | c.37.1.20 (D:26-262) Replication factor C2 {Baker' | 3e-31 | |
| d1sxjb2 | 224 | c.37.1.20 (B:7-230) Replication factor C4 {Baker's | 8e-30 | |
| d1iqpa2 | 231 | c.37.1.20 (A:2-232) Replication factor C {Archaeon | 2e-28 | |
| d1sxje2 | 252 | c.37.1.20 (E:4-255) Replication factor C5 {Baker's | 3e-28 | |
| d2gnoa2 | 198 | c.37.1.20 (A:11-208) gamma subunit of DNA polymera | 3e-24 | |
| d1sxja2 | 253 | c.37.1.20 (A:295-547) Replication factor C1 {Baker | 9e-24 | |
| d1sxjc2 | 227 | c.37.1.20 (C:12-238) Replication factor C3 {Baker' | 1e-23 | |
| d1in4a2 | 238 | c.37.1.20 (A:17-254) Holliday junction helicase Ru | 1e-21 | |
| d1a5ta2 | 207 | c.37.1.20 (A:1-207) delta prime subunit of DNA pol | 3e-21 | |
| d1ixsb2 | 239 | c.37.1.20 (B:4-242) Holliday junction helicase Ruv | 6e-19 | |
| d1w5sa2 | 287 | c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-t | 1e-14 | |
| d1fnna2 | 276 | c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrob | 6e-09 | |
| d1svma_ | 362 | c.37.1.20 (A:) Papillomavirus large T antigen heli | 3e-07 | |
| d1qvra3 | 315 | c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus | 1e-05 | |
| d2f9la1 | 175 | c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [T | 0.003 |
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 163 bits (414), Expect = 4e-46
Identities = 77/237 (32%), Positives = 132/237 (55%), Gaps = 1/237 (0%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
L +K+ P+TF D+VGQ V AL+N + ++ Y+F G G GKTS AR+ A+ LNC+
Sbjct: 2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 61
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ PCG C++C ++G+ ++ E+ E DLLDN+ + ++++++
Sbjct: 62 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 121
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ LS S++A+ K ++ P V F+L ++ LP I+SRC +F + I +
Sbjct: 122 DEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALDVEQIRH 181
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ-RISVPLVQELVG 646
L+ I ++E I + AL+L+A ++GSLRDA +Q G ++S V ++G
Sbjct: 182 QLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 238
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 237 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 120 bits (302), Expect = 3e-31
Identities = 57/243 (23%), Positives = 106/243 (43%), Gaps = 13/243 (5%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P+ ++ Q+ L + + +FYGP GTGKTS + L
Sbjct: 2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYG- 59
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
S +RG S ++V NF ++ + + + P Y+I +
Sbjct: 60 --PDLMKSRILELNASDERGISIVREKVK---NFARLTVSKPSKHDLENYPCPPYKIIIL 114
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ D+++ D+ SA+ + ++ F L+ + + + + S+C KF F + ++ I
Sbjct: 115 DEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAID 174
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL------GQRISVPLVQEL 644
L++I+ +E ++ D L+ I S G LR L+ S G+ I+ V+EL
Sbjct: 175 RLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQVEEL 234
Query: 645 VGL 647
G+
Sbjct: 235 AGV 237
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 224 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 116 bits (290), Expect = 8e-30
Identities = 44/236 (18%), Positives = 86/236 (36%), Gaps = 17/236 (7%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P+ D+VG L + + G G GKT+ A L +
Sbjct: 5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMI-ISGMPGIGKTTSVHCLAHELLGR 63
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
S G S DRG + + PP +++I +
Sbjct: 64 S----YADGVLELNASDDRGI------------DVVRNQIKHFAQKKLHLPPGKHKIVIL 107
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ D+++ + A+ + ++ F + + + + S+C + K+ D D++
Sbjct: 108 DEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSDEDVLK 167
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQELVG 646
L I E ++ D L+ I ++G +R A L+ ++ V ++V
Sbjct: 168 RLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKIVD 223
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Score = 112 bits (281), Expect = 2e-28
Identities = 56/235 (23%), Positives = 103/235 (43%), Gaps = 18/235 (7%)
Query: 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN 468
+ +KY P+ D+VGQ + + L + V + +F GP G GKT+ A AR L
Sbjct: 12 KPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELF 70
Query: 469 CQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIF 528
++ + ++ + + R I + + ++I
Sbjct: 71 GEN--------WRHNFLELNASDERGINVIREKVKEFA---------RTKPIGGASFKII 113
Query: 529 VFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADI 588
D+ D L+ D+ A+ + ++ V FIL + + I SRC F F ++D DI
Sbjct: 114 FLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDI 173
Query: 589 IYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQE 643
L++IA EG+E+ ++ L+ I ++G +R A L+ + L ++I+ V
Sbjct: 174 AKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFM 228
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 252 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 112 bits (280), Expect = 3e-28
Identities = 49/253 (19%), Positives = 105/253 (41%), Gaps = 21/253 (8%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471
KY P++ L + L + + + + YGP+GTGK + ++
Sbjct: 2 VDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPG 61
Query: 472 LEQPK--------PCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-- 521
+ + K I +GN D I +LL +
Sbjct: 62 VYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-MGNNDRIVIQELLKEVAQMEQVD 120
Query: 522 --------PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIIS 573
+Y+ + ++ ++L+ D+ +A+ + +++ + + I+V S+ + I S
Sbjct: 121 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 180
Query: 574 RCQKFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIASRSDGSLRDAEMTLEQLSLL 632
+C P D++I L + + E I+++ KD LK IA S+G+LR + + LE ++L
Sbjct: 181 QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240
Query: 633 GQRISVPLVQELV 645
+ +++ ++
Sbjct: 241 NE-LALKSSSPII 252
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Score = 99.4 bits (247), Expect = 3e-24
Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 27/200 (13%)
Query: 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVG-NF 504
+ G + + + + ++ E+ P G N
Sbjct: 18 ILINGEDLSYPREVSLELPEYVEKFPPKAS------------------DVLEIDPEGENI 59
Query: 505 DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564
+ I + D + S + + DC+ ++ + +A K ++ P V +L +
Sbjct: 60 GIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRW 119
Query: 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIA-------SKEGIEIDKDALKLIASRSDG 617
L I SR + K+ + + + + +A KL A + G
Sbjct: 120 HYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSG 179
Query: 618 SLRDAEMTLEQLSLLGQRIS 637
L ++ LE LL + +S
Sbjct: 180 -LMESLKVLETEKLLKKVLS 198
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 99.8 bits (247), Expect = 9e-24
Identities = 37/253 (14%), Positives = 70/253 (27%), Gaps = 24/253 (9%)
Query: 412 TQKYMPRTFRDLVGQNLVAQALSNAV--------------MRRKVGLL--YVFYGPHGTG 455
T KY P + + G L N + + G+ + YGP G G
Sbjct: 5 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIG 64
Query: 456 KTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDN 515
KT+ A + A+ L + + +N + N +
Sbjct: 65 KTTAAHLVAQELGYD---ILEQNASDVRSKTLLNAGVKNA-----LDNMSVVGYFKHNEE 116
Query: 516 MVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRC 575
I D + R + ++ + C
Sbjct: 117 AQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVC 176
Query: 576 QKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR 635
F + I L IA +E ++D + + + + G +R L +S +
Sbjct: 177 LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLLSTISTTTKT 236
Query: 636 ISVPLVQELVGLI 648
I+ + E+
Sbjct: 237 INHENINEISKAW 249
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 98.6 bits (244), Expect = 1e-23
Identities = 50/241 (20%), Positives = 94/241 (39%), Gaps = 23/241 (9%)
Query: 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470
+KY P T ++ GQN V + V K+ L FYGP GTGKTS AR +
Sbjct: 4 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLL-FYGPPGTGKTSTIVALAREIYG- 61
Query: 471 SLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVF 530
+ N + + R I V +++ +
Sbjct: 62 -------KNYSNMVLELNASDDRGIDVVRNQIKDFA---------STRQIFSKGFKLIIL 105
Query: 531 DDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIY 590
D+ D ++ + +A+ +V++R + F ++++ L ++S+C +F F + I
Sbjct: 106 DEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQEAIER 165
Query: 591 TLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-----ISVPLVQELV 645
+ + E +++ +A K + S+G +R L+ IS ++ E
Sbjct: 166 RIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECC 225
Query: 646 G 646
G
Sbjct: 226 G 226
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Score = 93.1 bits (230), Expect = 1e-21
Identities = 48/246 (19%), Positives = 90/246 (36%), Gaps = 23/246 (9%)
Query: 417 PRTFRDLVGQNLVAQALSNAV----MRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472
P++ + +GQ V + LS A+ MR +V + GP G GKT+ A I A L
Sbjct: 5 PKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT--- 61
Query: 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDD 532
+ + +G I G+ F + L+ V S F D
Sbjct: 62 ----NIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDI 117
Query: 533 CDTLSPDSWSAISKVVDRAPRRVVFILV-SSSLDALPHIIISRCQKFFFPKMKDADIIYT 591
P +K + + + + S + ++
Sbjct: 118 MIGKGPS-----AKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEI 172
Query: 592 LQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-----GQRISVPLVQELVG 646
++ AS +EI+ A ++IA RS G+ R A +++ + RI+ +V + +
Sbjct: 173 IKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDIVLKTME 232
Query: 647 LIS-DE 651
+++ D+
Sbjct: 233 VLNIDD 238
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} Length = 207 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Score = 91.3 bits (225), Expect = 3e-21
Identities = 33/205 (16%), Positives = 68/205 (33%), Gaps = 8/205 (3%)
Query: 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485
+ L + + + G G + +R L CQ + K CG C C
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQ 66
Query: 486 SHDRGKSRNIKEVGPVGNF---DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWS 542
G + + P +++ ++ + + ++ D L+ + +
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 543 AISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE 602
A+ K ++ P F L + + L + SRC+ + + + L +
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SREVT 181
Query: 603 IDKDALKLIASRSDGSLRDAEMTLE 627
+ +DAL S GS A +
Sbjct: 182 MSQDALLAALRLSAGSPGAALALFQ 206
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Score = 85.4 bits (210), Expect = 6e-19
Identities = 44/251 (17%), Positives = 87/251 (34%), Gaps = 32/251 (12%)
Query: 417 PRTFRDLVGQNLVAQALSNAV----MRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ-- 470
P+T + +GQ + Q L + R++ + +GP G GKT+ A + A L
Sbjct: 5 PKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 64
Query: 471 --SLEQPKPCGFCNSCI--SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYR 526
S + G + + S + G I E+ + E + +++
Sbjct: 65 VTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED----------- 113
Query: 527 IFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDA 586
FV D P + + ++ PR + + ++
Sbjct: 114 -FVMDIVIGQGPAARTIRLEL----PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPE 168
Query: 587 DIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQR-----ISVPLV 641
++ + A G+ I ++A I RS G++R A+ ++ Q I+
Sbjct: 169 ELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITRERA 228
Query: 642 QELVGLIS-DE 651
E + + DE
Sbjct: 229 LEALAALGLDE 239
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} Length = 287 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Score = 73.3 bits (178), Expect = 1e-14
Identities = 34/261 (13%), Positives = 78/261 (29%), Gaps = 36/261 (13%)
Query: 411 LTQKYMPRTFRDLVGQ-NLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFAR 465
+ Y+P R G+ +A+ N ++ V ++Y G G GKT+ A+ +
Sbjct: 9 FDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVK 68
Query: 466 ALNCQSLEQPKPCGFCNSCISHDRGKSRN-----------IKEVGPVGNFDFESILDLLD 514
++ + ++ + I+ G ++++D L
Sbjct: 69 RVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLY 128
Query: 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKV-------VDRAPRRVVFILVSSSL--- 564
++ + + +V + +
Sbjct: 129 VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSY 188
Query: 565 --DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIE--IDKDALKLIASRS----- 615
+ +P + K P K ++ L+ A + + L+LI+
Sbjct: 189 MREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKG 248
Query: 616 -DGSLRDAEMTLEQLSLLGQR 635
DGS R A + L+ + +
Sbjct: 249 GDGSARRAIVALKMACEMAEA 269
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 276 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Score = 56.4 bits (134), Expect = 6e-09
Identities = 30/247 (12%), Positives = 67/247 (27%), Gaps = 22/247 (8%)
Query: 411 LTQKYMPRTFRDLVGQ-NLVAQALSNAVMRRKVGLLYV-FYGPHGTGKTSCARIFARALN 468
+ Y+P+ Q + L N + G GTGKT R
Sbjct: 9 FSPSYVPKRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYK 68
Query: 469 CQS---LEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQY 525
++ + N G E + L++++
Sbjct: 69 DKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFL 128
Query: 526 RIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKD 585
+ + ++ + + D+ + +++ DA+ + + + +
Sbjct: 129 VLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIR 188
Query: 586 ADI--------IYTLQWIASKEGIEIDKDALKLIAS---------RSDGSLRDAEMTLEQ 628
I + A +D L++IA + G R A L +
Sbjct: 189 FSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYR 248
Query: 629 LSLLGQR 635
+ Q+
Sbjct: 249 SAYAAQQ 255
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} Length = 362 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Score = 51.6 bits (123), Expect = 3e-07
Identities = 23/183 (12%), Positives = 50/183 (27%), Gaps = 23/183 (12%)
Query: 446 YVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFD 505
++F GP +GKT+ A ++ + R E+G +
Sbjct: 157 WLFKGPIDSGKTTLAAALLELCGG-------------KALNVNLPLDRLNFELGVAID-Q 202
Query: 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPR-------RVVFI 558
F + + + ++ D L ++ +++ +
Sbjct: 203 FLVVFEDVKGTGGESRDLPSGQG-INNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIV 261
Query: 559 LVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDAL-KLIASRSDG 617
++ Q F PK + +++ K I+ L LI R
Sbjct: 262 TMNEYSVPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVA 321
Query: 618 SLR 620
Sbjct: 322 EFA 324
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} Length = 315 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Score = 46.2 bits (109), Expect = 1e-05
Identities = 39/199 (19%), Positives = 78/199 (39%), Gaps = 26/199 (13%)
Query: 423 LVGQNLVAQALSNAVMRRKVGL--------LYVFYGPHGTGKTSCARIFARALNCQSLEQ 474
+VGQ+ +A+++A+ R + GL ++F GP G GKT A+ A L
Sbjct: 25 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE--- 81
Query: 475 PKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCD 534
++ K + +G + L V RP Y + +FD+ +
Sbjct: 82 ---EAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP---YSVILFDEIE 135
Query: 535 TLSPDSWSAISKVV------DRAPRRVVF---ILVSSSLDALPHIIISRCQKFFFPKMKD 585
PD ++ + +++ D R V F +++ +S P I+ + + + +++D
Sbjct: 136 KAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRD 195
Query: 586 ADIIYTLQWIASKEGIEID 604
Q + +D
Sbjct: 196 EVFKVLQQHFRPEFLNRLD 214
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} Length = 175 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.9 bits (87), Expect = 0.003
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 13/169 (7%)
Query: 447 VFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDF 506
V G G GK++ F R + F I D GK+ + G +
Sbjct: 8 VLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-GKTIKAQIWDTAGQERY 66
Query: 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSW-SAISKVVDRAPRRVVFILVSSSLD 565
I + V+D L+ ++ + ++ D A +V +LV + D
Sbjct: 67 RRITSAYYRGA------VGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120
Query: 566 ALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASR 614
+ + F + + I T ++ + ++ +A K I +
Sbjct: 121 LRHLRAVPTDEARAFAEKNNLSFIET----SALDSTNVE-EAFKNILTE 164
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1152 | |||
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 100.0 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 100.0 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 99.97 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 99.97 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 99.97 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 99.96 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 99.96 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 99.93 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 99.93 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 99.91 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 99.86 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 99.77 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 99.76 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 99.7 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.69 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 99.64 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 99.62 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 99.6 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.53 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.51 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 99.44 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 99.42 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 99.4 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 99.4 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 99.39 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 99.35 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 99.19 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 99.04 | |
| d1jr3d1 | 127 | delta subunit {Escherichia coli [TaxId: 562]} | 99.03 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 98.86 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 98.82 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 98.81 | |
| d1jr3a1 | 126 | gamma subunit {Escherichia coli [TaxId: 562]} | 98.74 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 98.6 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 98.04 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.88 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 97.77 | |
| d1jqlb_ | 140 | delta subunit of DNA polymerase III, N-domain {Esc | 97.75 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 97.57 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 97.18 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.14 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 97.07 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.0 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 96.83 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 96.82 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 96.71 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 96.69 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 96.67 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.67 | |
| d1sxjd1 | 91 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.66 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.64 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 96.64 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.61 | |
| d1iqpa1 | 95 | Replication factor C {Archaeon Pyrococcus furiosus | 96.58 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 96.56 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.49 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 96.48 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.46 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 96.37 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 96.33 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 96.07 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.84 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 95.72 | |
| d1sxjc1 | 95 | Replication factor C3 {Baker's yeast (Saccharomyce | 95.7 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 95.61 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 95.59 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 95.4 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.31 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.28 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 95.14 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 95.08 | |
| d1wp9a1 | 200 | putative ATP-dependent RNA helicase PF2015 {Pyroco | 95.04 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.02 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 94.94 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.93 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.9 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 94.89 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 94.87 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 94.72 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 94.69 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.68 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 94.56 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 94.43 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.38 | |
| d2fz4a1 | 206 | DNA repair protein RAD25 {Archaeoglobus fulgidus [ | 94.32 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.28 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 94.26 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 94.24 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 94.18 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 94.15 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 94.08 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 94.07 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 94.06 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.92 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 93.91 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 93.85 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 93.77 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 93.76 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 93.69 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 93.64 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.63 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 93.55 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 93.43 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 93.39 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 93.35 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.31 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.17 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 93.17 | |
| d1s2ma1 | 206 | Putative ATP-dependent RNA helicase DHH1 {Baker's | 93.06 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 92.96 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 92.43 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 92.39 | |
| d1sxjb1 | 92 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.26 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.24 | |
| d2eyqa3 | 233 | Transcription-repair coupling factor, TRCF {Escher | 92.1 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 92.09 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 92.06 | |
| d2g9na1 | 218 | Initiation factor 4a {Human (Homo sapiens) [TaxId: | 92.06 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.0 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 91.98 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 91.77 | |
| d1qdea_ | 212 | Initiation factor 4a {Baker's yeast (Saccharomyces | 91.75 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 91.72 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 91.68 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 91.62 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 91.61 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 91.53 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 91.39 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 91.34 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.06 | |
| d1hv8a1 | 208 | Putative DEAD box RNA helicase {Archaeon Methanoco | 91.03 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.03 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.8 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 90.77 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 90.75 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.6 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 90.53 | |
| d1q0ua_ | 209 | Probable DEAD box RNA helicase YqfR {Bacillus stea | 90.42 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 90.33 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 90.3 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.3 | |
| d1gm5a3 | 264 | RecG helicase domain {Thermotoga maritima [TaxId: | 90.23 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 90.02 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 89.96 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 89.86 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 89.86 | |
| d1veca_ | 206 | DEAD box RNA helicase rck/p54 {Human (Homo sapiens | 89.74 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.74 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 89.71 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 89.7 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 89.55 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 89.4 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 89.4 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 89.18 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.77 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 88.69 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 88.49 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 88.11 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 87.82 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 87.54 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 87.53 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 87.43 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 87.13 | |
| d2j0sa1 | 222 | Probable ATP-dependent RNA helicase DDX48 {Human ( | 87.11 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 87.08 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 86.9 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 86.64 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 86.63 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.41 | |
| d1t6na_ | 207 | Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo | 86.18 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 86.1 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 85.87 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 85.44 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 85.36 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 85.33 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 85.03 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 84.8 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 84.58 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 84.48 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 83.87 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 82.98 | |
| d1rifa_ | 282 | DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665] | 82.92 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 82.79 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 82.76 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 82.18 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 81.76 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 81.55 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 81.52 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 81.51 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 81.46 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 81.16 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 81.14 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 81.07 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 81.04 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 80.92 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 80.87 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 80.82 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 80.62 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 80.26 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 80.08 |
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.7e-37 Score=327.41 Aligned_cols=236 Identities=32% Similarity=0.585 Sum_probs=225.3
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
|.+||||++|+||+||+++++.|..++..++.+|++|||||+|+|||++|+++++.+++.......+|+.|..|..+..+
T Consensus 2 ~~~KyrP~~~~dlig~~~~~~~L~~~i~~~~~~~~~Ll~Gp~G~GKtt~a~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~ 81 (239)
T d1njfa_ 2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQG 81 (239)
T ss_dssp HHHHTCCSSGGGSCSCHHHHHHHHHHHHTTCCCSEEEEECSTTSSHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHHT
T ss_pred chhhhCCCCHHHccChHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCccccccCccccchHHHHHHcC
Confidence 67899999999999999999999999999999999999999999999999999999999887788899999999999999
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHH
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHI 570 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~a 570 (1152)
.+.+++++++....+++.++++++.+...+..++++||||||+|.|+.+++++|+++||+++.+++||++||+++++.++
T Consensus 82 ~~~~~~~~~~~~~~~i~~ir~~~~~~~~~~~~~~~kviiIde~d~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i~~~ 161 (239)
T d1njfa_ 82 RFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVT 161 (239)
T ss_dssp CCTTEEEEETTCSSSHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGSCHH
T ss_pred CCCeEEEecchhcCCHHHHHHHHHHHHhccccCCCEEEEEECcccCCHHHHHHHHHHHhcCCCCeEEEEEcCCccccChh
Confidence 99999999988888999999999999888888899999999999999999999999999999999999999999999999
Q ss_pred HHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-CCCCCHHHHHHHHh
Q 036794 571 IISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL-GQRISVPLVQELVG 646 (1152)
Q Consensus 571 L~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl-g~~IT~EdV~elVg 646 (1152)
|++||..+.|++++.+++..++..++..+++.+++++++.|+..+.||+|.+++.|+++... .+.|+.++|.+++|
T Consensus 162 i~SRc~~i~~~~~~~~~i~~~l~~i~~~e~~~~~~~~l~~i~~~s~Gd~R~ain~l~~~~~~~~~~I~~~~v~~~lg 238 (239)
T d1njfa_ 162 ILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSAMLG 238 (239)
T ss_dssp HHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHTTTCHHHHHHHHHHHHHHTTTSBCHHHHHHHHT
T ss_pred HhhhhcccccccCcHHHhhhHHHHHHhhhccCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999997655 46799999999986
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.1e-32 Score=284.79 Aligned_cols=219 Identities=18% Similarity=0.330 Sum_probs=195.2
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH 487 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i 487 (1152)
..||.+||||++|+|||||+++++.|++++..+..++ +|||||||+|||++|+++|+++++...
T Consensus 2 ~~pw~eKyrP~~~~d~ig~~~~~~~L~~~~~~~~~~~-~ll~Gp~G~GKTt~a~~la~~l~~~~~--------------- 65 (224)
T d1sxjb2 2 QLPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSY--------------- 65 (224)
T ss_dssp CCCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGGH---------------
T ss_pred CCchHhHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCe-EEEECCCCCCchhhHHHHHHHHhcccc---------------
Confidence 3589999999999999999999999999999999887 789999999999999999999987531
Q ss_pred cCCCccceEEeCCCCCCCHHHHHHHHHHHhhC---CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 488 DRGKSRNIKEVGPVGNFDFESILDLLDNMVTS---RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 488 ~~g~~~dviEIdaas~~~vdeIreLle~a~~~---P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..++.+++.....+...+...+...... .....+++|||||+|.+....+++|+..+++++..++||++|+..
T Consensus 66 ----~~~~~~~n~~~~~~~~~i~~~~~~~~~~~~~~~~~~~kviiiDe~d~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~ 141 (224)
T d1sxjb2 66 ----ADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQS 141 (224)
T ss_dssp ----HHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ----ccccccccccccCCceehhhHHHHHHHhhccCCCcceEEEEEecccccchhHHHHHhhhccccccceeeeeccCch
Confidence 2236677776667777766666654332 234567899999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
++++++|++||..|.|++|+.+++..+|..+++++++.+++++++.|+..+.||+|.|++.||.++...+.|+.+.|.++
T Consensus 142 ~~i~~~l~sr~~~i~~~~~~~~~i~~~l~~i~~~e~~~i~~~~l~~I~~~s~Gd~R~ai~~Lq~~~~~~~~i~~~~i~~~ 221 (224)
T d1sxjb2 142 NKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAGHGLVNADNVFKI 221 (224)
T ss_dssp GGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSBCHHHHHHH
T ss_pred hhhhhHHHHHHHHhhhcccchhhhHHHHHHHHHhcccCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCcCHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998877778999988887
Q ss_pred Hh
Q 036794 645 VG 646 (1152)
Q Consensus 645 Vg 646 (1152)
+.
T Consensus 222 ~d 223 (224)
T d1sxjb2 222 VD 223 (224)
T ss_dssp HT
T ss_pred hC
Confidence 64
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=1e-31 Score=281.26 Aligned_cols=219 Identities=21% Similarity=0.378 Sum_probs=190.6
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
.||.+||+|++|+|||||+++++.|++++..+..++ +|||||+|+|||++|++||+++++...
T Consensus 2 ~pw~ekyrP~~~~divg~~~~~~~L~~~i~~~~~~~-lLl~Gp~G~GKttl~~~la~~l~~~~~---------------- 64 (227)
T d1sxjc2 2 LPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNY---------------- 64 (227)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTSH----------------
T ss_pred CchhhhhCCCCHHHccCcHHHHHHHHHHHHcCCCCe-EEEECCCCCChhHHHHHHHHHhhcCCC----------------
Confidence 489999999999999999999999999999999887 889999999999999999999875421
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHh--hCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMV--TSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~--~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
...+.+++.....+.+.......... .......+++|||||+|.+....+++|+++|++++..++|+++|+.+.+
T Consensus 65 ---~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kiiiiDe~d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 65 ---SNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp ---HHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred ---cceeEEecccccCCeeeeecchhhccccccccCCCeEEEEEeccccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 12245666555566665555544432 2334466789999999999999999999999999999999999999999
Q ss_pred chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhC-----CCCCHHHH
Q 036794 567 LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLG-----QRISVPLV 641 (1152)
Q Consensus 567 L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg-----~~IT~EdV 641 (1152)
++++|++||..+.|++++..++..+|..++..+++.+++++++.|++.+.||+|.|+|.||.+.... ..||.++|
T Consensus 142 i~~~i~sr~~~i~~~~~~~~~i~~~l~~I~~~e~i~i~~~~l~~i~~~s~Gd~R~ain~Lq~~~~~~~~~~~~~It~~~v 221 (227)
T d1sxjc2 142 LTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVI 221 (227)
T ss_dssp SCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCCBCHHHH
T ss_pred hHHHHHHHHhhhccccccccccccccccccccccccCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCCeeCHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999986552 35999999
Q ss_pred HHHHhc
Q 036794 642 QELVGL 647 (1152)
Q Consensus 642 ~elVg~ 647 (1152)
.+++|.
T Consensus 222 ~e~~g~ 227 (227)
T d1sxjc2 222 YECCGA 227 (227)
T ss_dssp HHHTTC
T ss_pred HHHhCc
Confidence 999873
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=99.97 E-value=3.9e-31 Score=277.85 Aligned_cols=218 Identities=27% Similarity=0.445 Sum_probs=190.8
Q ss_pred cccchhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 407 RHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 407 ~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
..++|.+||+|++|+||+||+.+++.|..++..++.++ +|||||||+|||++|++||+++++...
T Consensus 10 ~~~~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~-lll~Gp~G~GKTtla~~iak~l~~~~~-------------- 74 (231)
T d1iqpa2 10 LEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENW-------------- 74 (231)
T ss_dssp TTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGGH--------------
T ss_pred hhchHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCe-EEEECCCCCcHHHHHHHHHHHHHhccc--------------
Confidence 45899999999999999999999999999999998876 889999999999999999999987521
Q ss_pred ccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCC--CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 487 HDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP--PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 487 i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~--~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~ 564 (1152)
..+++++++....+.+.++........... ...+.|++|||+|.+....+++|+++++++..+++||++||..
T Consensus 75 -----~~~~~e~n~s~~~~~~~~~~~~~~~~~~~~~~~~~~~iilide~d~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~ 149 (231)
T d1iqpa2 75 -----RHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 149 (231)
T ss_dssp -----HHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred -----CCCeeEEecCcccchhHHHHHHHHHHhhhhccCCCceEEeehhhhhcchhHHHHHhhhcccCCcceEEEeccCCh
Confidence 123566665544445555555555433322 2467899999999999999999999999999999999999999
Q ss_pred CcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCCCHHHHHHH
Q 036794 565 DALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQRISVPLVQEL 644 (1152)
Q Consensus 565 dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~~IT~EdV~el 644 (1152)
.+++++|.+||..+.|++++..++..+|..++.++++.+++++++.|++.+.||+|.+++.|+.++...+.||.++|..+
T Consensus 150 ~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~e~i~i~~~~l~~I~~~~~gdiR~ai~~Lq~~~~~~~~it~e~v~~v 229 (231)
T d1iqpa2 150 SKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALDKKITDENVFMV 229 (231)
T ss_dssp GGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred hhchHhHhCccccccccccchhhHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCCcCHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999888888999988765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8e-30 Score=266.85 Aligned_cols=219 Identities=25% Similarity=0.433 Sum_probs=181.3
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
||++||+|++|+||+||+++++.|++++..++.++ +||+||+|+|||++++++++++.+.....
T Consensus 1 ~w~~ky~P~~~~diig~~~~~~~l~~~i~~~~~~~-lll~Gp~G~GKTtl~~~i~~~l~~~~~~~--------------- 64 (237)
T d1sxjd2 1 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLMK--------------- 64 (237)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHHHHT---------------
T ss_pred CcchhhCCCCHHHccCcHHHHHHHHHHHHcCCCCe-EEEECCCCCChHHHHHHHHHHHcCCcccc---------------
Confidence 79999999999999999999999999999988876 89999999999999999999986542111
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhC------------CCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEE
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTS------------RPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVF 557 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~------------P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~Vif 557 (1152)
....+++.....+...+...+...... .....++||||||+|.++...++.|+++++.++..++|
T Consensus 65 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDe~d~l~~~~~~~l~~~~~~~~~~~~~ 141 (237)
T d1sxjd2 65 ---SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRF 141 (237)
T ss_dssp ---TSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEE
T ss_pred ---cchhheeccccccchHHHHHHHHHhhhhhhhhhHHHHhhccccCceEEEEecccccCHHHHHHHhhccccccccccc
Confidence 112233332223333322222221100 12345789999999999999999999999999999999
Q ss_pred EEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHh-----
Q 036794 558 ILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLL----- 632 (1152)
Q Consensus 558 ILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLl----- 632 (1152)
|++++...+++++|++||..|.|++++..++..+|..++.++++.+++++++.|+..+.||+|.+++.|+.++..
T Consensus 142 i~~~~~~~~~~~~l~sr~~~i~f~~~~~~~~~~~L~~i~~~e~i~i~~~~l~~ia~~s~gd~R~ai~~L~~~~~~~~~~~ 221 (237)
T d1sxjd2 142 CLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLG 221 (237)
T ss_dssp EEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHHTHHHHHHHC
T ss_pred cccccccccccccccchhhhhccccccccccchhhhhhhhhhcCcCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999987443
Q ss_pred -CCCCCHHHHHHHHhc
Q 036794 633 -GQRISVPLVQELVGL 647 (1152)
Q Consensus 633 -g~~IT~EdV~elVg~ 647 (1152)
++.||.++|++++|.
T Consensus 222 ~~~~It~~~i~e~~g~ 237 (237)
T d1sxjd2 222 DGKNITSTQVEELAGV 237 (237)
T ss_dssp SCCCCCHHHHHHHHTC
T ss_pred CCCccCHHHHHHhhCc
Confidence 346999999999873
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=8.7e-29 Score=259.06 Aligned_cols=198 Identities=17% Similarity=0.258 Sum_probs=184.7
Q ss_pred CcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC---
Q 036794 425 GQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV--- 501 (1152)
Q Consensus 425 GQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa--- 501 (1152)
+++.+.+.|.+.+..++.+|+|||+||+|+|||++|+.+|+.+.|.......+|+.|..|..+..+.+.++..+...
T Consensus 6 w~~~~~~~l~~~~~~~~l~h~lLl~Gp~G~GKtt~a~~~a~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 85 (207)
T d1a5ta2 6 WLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK 85 (207)
T ss_dssp GGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC
T ss_pred ccHHHHHHHHHHHHcCCcCeEEEEECCCCCcHHHHHHHHHHhcccccccccccccccchhhhhhhccccccchhhhhhcc
Confidence 57788899999999999999999999999999999999999999998888899999999999999999999998543
Q ss_pred CCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEec
Q 036794 502 GNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFP 581 (1152)
Q Consensus 502 s~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~ 581 (1152)
....+++++++.+.+...+..++++||||||+|.|+.+++++|+++||+|+.+++||++|++++++.++|+|||+.|.|+
T Consensus 86 ~~i~~~~ir~l~~~~~~~~~~~~~kviIide~d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ll~tI~SRc~~i~~~ 165 (207)
T d1a5ta2 86 NTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLA 165 (207)
T ss_dssp SSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTSEEEECC
T ss_pred cccccchhhHHhhhhhhccccCccceEEechhhhhhhhhhHHHHHHHHhhcccceeeeeecChhhhhhhhcceeEEEecC
Confidence 44678999999999988898899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHH
Q 036794 582 KMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLE 627 (1152)
Q Consensus 582 ~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LE 627 (1152)
+++.+++..+|. +.+.++++++..++..++|++|.|+++||
T Consensus 166 ~~~~~~~~~~L~-----~~~~~~~~~~~~i~~~s~Gs~r~al~~le 206 (207)
T d1a5ta2 166 PPPEQYAVTWLS-----REVTMSQDALLAALRLSAGSPGAALALFQ 206 (207)
T ss_dssp CCCHHHHHHHHH-----HHCCCCHHHHHHHHHHTTTCHHHHHHTTS
T ss_pred CCCHHHHHHHHH-----HcCCCCHHHHHHHHHHcCCCHHHHHHHhC
Confidence 999999998885 34678999999999999999999999875
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=3.5e-28 Score=256.62 Aligned_cols=223 Identities=23% Similarity=0.352 Sum_probs=168.9
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC-----CCCCCCCccc
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP-----KPCGFCNSCI 485 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~-----epcg~c~~c~ 485 (1152)
|++||+|++|+|++|++.++..|+.++..+...+.+|||||+|||||++|+++|+++.+...... ..+..+....
T Consensus 1 W~eky~P~~~~diig~~~~~~~L~~~~~~~~~~~~lll~Gp~G~GKTt~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (252)
T d1sxje2 1 WVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKL 80 (252)
T ss_dssp CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC----------------
T ss_pred CCcccCCCCHHHccCcHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHhhcCccccccccccccccccccchh
Confidence 89999999999999999999999999988887778999999999999999999999865432211 1111111111
Q ss_pred cccCCCccceEEeCCC--CCCCHHHHHHHHHHHhh----------CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCC
Q 036794 486 SHDRGKSRNIKEVGPV--GNFDFESILDLLDNMVT----------SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPR 553 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaa--s~~~vdeIreLle~a~~----------~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~ 553 (1152)
.+..........+... +......+...+..... ....+..+++||||+|.|+...++.|++.+++++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiiide~d~l~~~~~~~l~~~~e~~~~ 160 (252)
T d1sxje2 81 ELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSK 160 (252)
T ss_dssp --CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHHSTT
T ss_pred hhhhccCCccceeeecccccCCcceeeehhhhhhhhhhhhhhhcccccCCCceEEEeccccccccccchhhhcccccccc
Confidence 1111111222223221 11222223333332211 11234578999999999999999999999999999
Q ss_pred CEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCC-HHHHHHHHHhcCCCHHHHHHHHHHHHHh
Q 036794 554 RVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEID-KDALKLIASRSDGSLRDAEMTLEQLSLL 632 (1152)
Q Consensus 554 ~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id-~dALelLAe~s~GDLR~Ain~LEkLsLl 632 (1152)
+++||++||++++++++|++||+.|.|++|+..++.++|..++..+++.++ +++++.|+..+.||+|.+++.||.++..
T Consensus 161 ~~~~Il~tn~~~~i~~~l~sR~~~i~~~~~~~~~~~~~l~~i~~~e~~~~~~~~~l~~i~~~s~Gd~R~ai~~Lq~~~~~ 240 (252)
T d1sxje2 161 NIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMALN 240 (252)
T ss_dssp TEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHTHHHHT
T ss_pred cccceeeeccccchhhhhhcchheeeecccchhhHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCcHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999875 7889999999999999999999988775
Q ss_pred C
Q 036794 633 G 633 (1152)
Q Consensus 633 g 633 (1152)
+
T Consensus 241 ~ 241 (252)
T d1sxje2 241 N 241 (252)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=6.2e-26 Score=239.74 Aligned_cols=214 Identities=19% Similarity=0.261 Sum_probs=160.0
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh----------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR----------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~----------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
+.|++||+|++|+||+|++.+++.|.+++.. ....+++|||||||||||++|+++|+++++...
T Consensus 2 ~lW~eky~P~~~~dlig~~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~lll~GPpG~GKTt~a~~la~~~~~~~~ 81 (253)
T d1sxja2 2 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDIL 81 (253)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CccccCcCCCCHHHhcCCHHHHHHHHHHHHhhhhcchhhhhhhcccCCCCCceEEEECCCCCCHHHHHHHHHHHHHhhhh
Confidence 5799999999999999999999999998864 122357999999999999999999999887643
Q ss_pred CCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHH--------------HhhCCCCCCceEEEEeCCCCCCH
Q 036794 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDN--------------MVTSRPPSQYRIFVFDDCDTLSP 538 (1152)
Q Consensus 473 e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~--------------a~~~P~~a~~kVVIIDEID~Ls~ 538 (1152)
..+.+ ...+...+...+.. .......+.+.++++||++.+..
T Consensus 82 ~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~ide~~~~~~ 137 (253)
T d1sxja2 82 EQNAS------------------------DVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSG 137 (253)
T ss_dssp EECTT------------------------SCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCT
T ss_pred ccccc------------------------cchhhHHHHHHHHHHhhcchhhhhhhhhhhcccccccceEEEeeecccccc
Confidence 22211 11111111111110 11223345678999999999987
Q ss_pred HHHHHHHHHHh---hCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhc
Q 036794 539 DSWSAISKVVD---RAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRS 615 (1152)
Q Consensus 539 eaqnaLLklLE---epp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s 615 (1152)
..+..+..+++ .....+++|..++... ..+.+++||..|.|++|+..++..+|+.++.++|+.+++++++.|+..+
T Consensus 138 ~~~~~~~~~~~~~~~~~~~ii~i~~~~~~~-~~~~l~~~~~~i~f~~~~~~~i~~~l~~i~~~e~i~i~~~~l~~i~~~s 216 (253)
T d1sxja2 138 GDRGGVGQLAQFCRKTSTPLILICNERNLP-KMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTT 216 (253)
T ss_dssp TSTTHHHHHHHHHHHCSSCEEEEESCTTSS-TTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHT
T ss_pred chhhhhHHHhhhhccccccccccccccccc-ccccccceeeeeeccccchhHHHHHHHHHHHHhCCCCCHHHHHHHHHhC
Confidence 76554444444 4333333333333333 4446999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhCCCCCHHHHHHHHhc
Q 036794 616 DGSLRDAEMTLEQLSLLGQRISVPLVQELVGL 647 (1152)
Q Consensus 616 ~GDLR~Ain~LEkLsLlg~~IT~EdV~elVg~ 647 (1152)
+||+|.+++.|+.++...+.|+.+.|.++...
T Consensus 217 ~GDiR~ai~~L~~~~~~~~~i~~~~~~~~~~~ 248 (253)
T d1sxja2 217 RGDIRQVINLLSTISTTTKTINHENINEISKA 248 (253)
T ss_dssp TTCHHHHHHHHTHHHHHSSCCCTTHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCCHHHHHHHhch
Confidence 99999999999999888888998888777643
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=99.93 E-value=6.3e-25 Score=230.89 Aligned_cols=204 Identities=19% Similarity=0.221 Sum_probs=168.4
Q ss_pred hhCCCCcCcccCcHHHHHHHHHHHHh----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 414 KYMPRTFRDLVGQNLVAQALSNAVMR----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 414 KyRP~sFddLVGQe~v~q~Lk~aL~~----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
-.||++|+|+|||+++++.|..++.. +...+++|||||||||||++|++||+++++..
T Consensus 2 ~~RP~~~~divGqe~~~~~l~~~i~~~~~~~~~~~~~L~~GPpGtGKT~lA~~la~~~~~~~------------------ 63 (238)
T d1in4a2 2 FLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI------------------ 63 (238)
T ss_dssp TTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE------------------
T ss_pred CCCCCcHHHcCChHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHhccCCCc------------------
Confidence 36999999999999999999988753 55556799999999999999999999998762
Q ss_pred CCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC------------------
Q 036794 490 GKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA------------------ 551 (1152)
Q Consensus 490 g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep------------------ 551 (1152)
.++++........+...+... ..+.+++|||++.+....++.|+..++..
T Consensus 64 ------~~~~~~~~~~~~~~~~~~~~~------~~~~~~~ide~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (238)
T d1in4a2 64 ------HVTSGPVLVKQGDMAAILTSL------ERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRID 131 (238)
T ss_dssp ------EEEETTTCCSHHHHHHHHHHC------CTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC--------------
T ss_pred ------ccccCcccccHHHHHHHHHhh------ccCCchHHHHHHHhhhHHHhhcccceeeeeeeeeecCcccccccccC
Confidence 222232333445555555443 45689999999999999999999888762
Q ss_pred CCCEEEEEEcCCCCcchHHHHccceE-EEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHH
Q 036794 552 PRRVVFILVSSSLDALPHIIISRCQK-FFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLS 630 (1152)
Q Consensus 552 p~~VifILaTN~~dkL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLs 630 (1152)
..+++||++|+++..+++++++||.. +.|++++..++..++..++..+++.++++++..++.++.||+|.+++.|+.+.
T Consensus 132 ~~~~~~I~at~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~i~~~s~gd~R~ai~~l~~~~ 211 (238)
T d1in4a2 132 IQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVR 211 (238)
T ss_dssp -CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCccccccceeeeeEEEEecCCCHHHHHHHHHHhhhhccchhhHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 34789999999999999999999875 78999999999999999999999999999999999999999999999999864
Q ss_pred Hh-----CCCCCHHHHHHHHhc
Q 036794 631 LL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 631 Ll-----g~~IT~EdV~elVg~ 647 (1152)
.. .+.||.+.+.+++..
T Consensus 212 ~~~~~~~~~~it~~~~~~al~~ 233 (238)
T d1in4a2 212 DMLTVVKADRINTDIVLKTMEV 233 (238)
T ss_dssp HHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHhcCCccCHHHHHHHHHh
Confidence 22 356998888877653
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=99.91 E-value=1.3e-23 Score=221.19 Aligned_cols=204 Identities=17% Similarity=0.190 Sum_probs=162.9
Q ss_pred hCCCCcCcccCcHHHHHHHHHHHHhC----CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 415 YMPRTFRDLVGQNLVAQALSNAVMRR----KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 415 yRP~sFddLVGQe~v~q~Lk~aL~~g----ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
.||++|+|+|||+++++.|+.++... ...+.+|||||||||||++|+++|+++++..
T Consensus 3 ~RP~~~ddivGq~~~~~~L~~~i~~~~~~~~~~~~~Ll~GPpG~GKTtla~~la~~~~~~~------------------- 63 (239)
T d1ixsb2 3 LRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNL------------------- 63 (239)
T ss_dssp CCCCSGGGSCSCHHHHHHHHHHHHHHTTSSSCCCCEEEECCTTSCHHHHHHHHHHHHTCCE-------------------
T ss_pred cCCCCHHHhCCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCe-------------------
Confidence 48999999999999999999998753 3345699999999999999999999987652
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh------------------CC
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR------------------AP 552 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe------------------pp 552 (1152)
..+++............+.. ......+++|||+|.+....+..|+..+++ ..
T Consensus 64 -----~~~~~~~~~~~~~~~~~~~~-----~~~~~~i~~iDe~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~~~~~~~~~ 133 (239)
T d1ixsb2 64 -----RVTSGPAIEKPGDLAAILAN-----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLEL 133 (239)
T ss_dssp -----EEEETTTCCSHHHHHHHHHT-----TCCTTCEEEEETGGGCCHHHHHHHHHHHHHSEEEEECSCTTCCCEEEEEC
T ss_pred -----EeccCCccccchhhHHHHHh-----hccCCCeeeeecccccchhHHHhhhhhhhhhhhhhhhccchhhhhcccCC
Confidence 22222222233333333322 224567999999999999999999998875 23
Q ss_pred CCEEEEEEcCCCCc-chHHHHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 553 RRVVFILVSSSLDA-LPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 553 ~~VifILaTN~~dk-L~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
.+++||++|+++.. .++.+.++|..+.|..++.+++..++..++..+++.++++++..++..+.||+|.+++.|+.+..
T Consensus 134 ~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~l~~ia~~s~gd~R~a~~~l~~~~~ 213 (239)
T d1ixsb2 134 PRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRD 213 (239)
T ss_dssp CCCEEEEEESCCSSCSCGGGGGCSEEEECCCCCHHHHHHHHHHHHGGGCCCBCHHHHHHHHHHTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEeeccCcccccchhhcccceeeEeeccChhhhhHHHHHHHHHhCCccchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 46778888887764 55667778889999999999999999999999999999999999999999999999999999864
Q ss_pred h-----CCCCCHHHHHHHHhc
Q 036794 632 L-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 632 l-----g~~IT~EdV~elVg~ 647 (1152)
+ .+.||.+.+.+++..
T Consensus 214 ~a~~~~~~~It~~~~~~~l~~ 234 (239)
T d1ixsb2 214 FAQVAGEEVITRERALEALAA 234 (239)
T ss_dssp HHTTSCCSCBCHHHHHHHHHH
T ss_pred HHHHhCCCCcCHHHHHHHHhh
Confidence 4 235999988887753
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.86 E-value=2.3e-21 Score=201.64 Aligned_cols=184 Identities=17% Similarity=0.223 Sum_probs=143.9
Q ss_pred HHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCC-CCHH
Q 036794 429 VAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGN-FDFE 507 (1152)
Q Consensus 429 v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~-~~vd 507 (1152)
.++.|++++.++. ++.|||+||+|+|||++|..+++.+.... ..++|++++.+.+. .+++
T Consensus 2 ~~~~l~~~i~~~~-~~~~l~~G~~g~gk~~~a~~l~~~i~~~~------------------~~h~D~~~i~~~~~~I~Id 62 (198)
T d2gnoa2 2 QLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVEKFP------------------PKASDVLEIDPEGENIGID 62 (198)
T ss_dssp HHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSC------------------CCTTTEEEECCSSSCBCHH
T ss_pred HHHHHHHHHhcCC-CceEEEECCCCCCHHHHHHHHHHHHhccc------------------cCCCCEEEEeCCcCCCCHH
Confidence 3577888888775 66799999999999999999999875432 23578999987653 6899
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhH
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDAD 587 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~E 587 (1152)
+++++.+.+...|..++++|+||||+|.|+.+++++||++||+||.+++||++|++++++++||+|||+.+.|+++..
T Consensus 63 ~IR~i~~~~~~~~~~~~~KviIId~ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ll~TI~SRC~~i~~~~p~~-- 140 (198)
T d2gnoa2 63 DIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKE-- 140 (198)
T ss_dssp HHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTTSEEEECCCCHH--
T ss_pred HHHHHHHHHhhCcccCCCEEEEEeCccccchhhhhHHHHHHhCCCCCceeeeccCChhhCHHHHhcceEEEeCCCchH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999987653
Q ss_pred HHHHHHHH----HHH-----cCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHhCC
Q 036794 588 IIYTLQWI----ASK-----EGIEIDKDALKLIASRSDGSLRDAEMTLEQLSLLGQ 634 (1152)
Q Consensus 588 I~eiL~~i----akk-----eGl~Id~dALelLAe~s~GDLR~Ain~LEkLsLlg~ 634 (1152)
...++... .+. .+.....+++..++....| +++.++.++...+..+
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~ld~~~~l~k 195 (198)
T d2gnoa2 141 FRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEKLSG-LMESLKVLETEKLLKK 195 (198)
T ss_dssp HHHHHHHHHTTHHHHCGGGGTCHHHHHHHHHHHHHHHHH-HHHHHHHSCHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHhhC-HHHHHHHHHHHHHHHH
Confidence 23333222 111 1222344566666665544 6666666665554443
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=99.77 E-value=2.7e-18 Score=184.05 Aligned_cols=199 Identities=20% Similarity=0.238 Sum_probs=146.0
Q ss_pred CCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
.+|+||+|.+.+++.|.+.+.- ...+.++|||||||||||++|++||+++++.
T Consensus 6 ~~~~di~G~~~~k~~l~~~i~~l~~~~~~~~~g~~~~~giLl~GppGtGKT~la~aia~~~~~~---------------- 69 (247)
T d1ixza_ 6 VTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVP---------------- 69 (247)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCC----------------
T ss_pred CcHHHHccHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEecCCCCChhHHHHHHHHHcCCC----------------
Confidence 4899999999999888765521 2445689999999999999999999998765
Q ss_pred ccCCCccceEEeCCC----CCC--CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHH
Q 036794 487 HDRGKSRNIKEVGPV----GNF--DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISK 546 (1152)
Q Consensus 487 i~~g~~~dviEIdaa----s~~--~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLk 546 (1152)
++.++.. ... ....++++++.+.. ..+.||||||+|.+.. ...+.|+.
T Consensus 70 --------~~~i~~~~l~~~~~g~~~~~l~~~f~~a~~----~~p~Ii~iDeid~l~~~r~~~~~~~~~~~~~~~~~ll~ 137 (247)
T d1ixza_ 70 --------FITASGSDFVEMFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV 137 (247)
T ss_dssp --------EEEEEHHHHHHSCTTHHHHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHHHHHHHHHHHH
T ss_pred --------EEEEEhHHhhhccccHHHHHHHHHHHHHHH----cCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHH
Confidence 2222211 111 22446677776642 2357999999987621 13567888
Q ss_pred HHhh--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHH
Q 036794 547 VVDR--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLR 620 (1152)
Q Consensus 547 lLEe--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR 620 (1152)
.|+. ....++||++||.++.++++|++ |+. .|.|++|+.+++.++++.++...... .+..+..|++.+.| ..+
T Consensus 138 ~~d~~~~~~~vivi~tTn~~~~ld~al~R~~Rf~~~i~~~~P~~~eR~~il~~~l~~~~~~-~~~~~~~la~~t~g~s~~ 216 (247)
T d1ixza_ 138 EMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGA 216 (247)
T ss_dssp HHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHH
T ss_pred HhhCCCCCCCEEEEEeCCCccccCHhHcCCCCCcEEEEECCcCHHHHHHHHHHHhcccCCc-cccCHHHHHHHCCCCCHH
Confidence 8875 34678899999999999999984 786 79999999999999999888765543 23347888998877 666
Q ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHH
Q 036794 621 DAEMTLEQLSLL-----GQRISVPLVQELV 645 (1152)
Q Consensus 621 ~Ain~LEkLsLl-----g~~IT~EdV~elV 645 (1152)
++.++++.+.+. ...|+.+|+.+++
T Consensus 217 di~~lv~~A~l~a~~~~~~~i~~~d~~~A~ 246 (247)
T d1ixza_ 217 DLENLLNEAALLAAREGRRKITMKDLEEAA 246 (247)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHhh
Confidence 777777665433 2369999988775
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=4.8e-18 Score=183.05 Aligned_cols=208 Identities=16% Similarity=0.174 Sum_probs=150.3
Q ss_pred CCCcCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccc
Q 036794 417 PRTFRDLVGQNLVAQALSNAVMR-----------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCI 485 (1152)
Q Consensus 417 P~sFddLVGQe~v~q~Lk~aL~~-----------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~ 485 (1152)
..+|+||+|.+.+++.|.+.+.. ...+.++|||||||||||++|+++|++++.....
T Consensus 8 ~~t~~Di~Gl~~~k~~l~e~v~~~~~~~~~~~~g~~~~~~iLL~GppGtGKT~la~~iA~~~~~~~~~------------ 75 (256)
T d1lv7a_ 8 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT------------ 75 (256)
T ss_dssp CCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEE------------
T ss_pred CCCHHHHhchHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEeeCCCCCCccHHHHHHHHHcCCCEEE------------
Confidence 34899999999999988876532 3456789999999999999999999998765211
Q ss_pred cccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------------HHHHHHHHHHhh-
Q 036794 486 SHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------------DSWSAISKVVDR- 550 (1152)
Q Consensus 486 ~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------------eaqnaLLklLEe- 550 (1152)
+..+... +.........++.+++.+.. ..+.||||||+|.+.. ...+.|+..++.
T Consensus 76 -i~~~~l~-----~~~~g~~~~~l~~~f~~A~~----~~P~il~iDeiD~l~~~r~~~~~~~~~~~~~~~~~ll~~~d~~ 145 (256)
T d1lv7a_ 76 -ISGSDFV-----EMFVGVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF 145 (256)
T ss_dssp -ECSCSST-----TSCCCCCHHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTC
T ss_pred -EEhHHhh-----hcchhHHHHHHHHHHHHHHH----cCCEEEEEEChhhhCccCCCCCCCCcHHHHHHHHHHHHHhhCC
Confidence 1111100 01111234668888887753 2447999999987521 135678888875
Q ss_pred -CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHH
Q 036794 551 -APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAEMT 625 (1152)
Q Consensus 551 -pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ain~ 625 (1152)
....++||++||.++.+++++++ |+. .|.|++|+.+++.++++....+..+. .+..+..|++.+.| +.+++.++
T Consensus 146 ~~~~~v~vIatTn~~~~ld~al~R~gRfd~~i~i~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adi~~l 224 (256)
T d1lv7a_ 146 EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANL 224 (256)
T ss_dssp CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHH
T ss_pred CCCCCEEEEEeCCCcccCCHhHcCCCCCCEEEECCCcCHHHHHHHHHHhccCCCcC-cccCHHHHHHhCCCCCHHHHHHH
Confidence 34578999999999999999986 785 79999999999999999888766544 33457788888877 77778788
Q ss_pred HHHHHHh---C--CCCCHHHHHHHHhc
Q 036794 626 LEQLSLL---G--QRISVPLVQELVGL 647 (1152)
Q Consensus 626 LEkLsLl---g--~~IT~EdV~elVg~ 647 (1152)
++.+++. . ..|+.+++.+++..
T Consensus 225 ~~~A~~~a~~~~~~~i~~~d~~~Al~r 251 (256)
T d1lv7a_ 225 VNEAALFAARGNKRVVSMVEFEKAKDK 251 (256)
T ss_dssp HHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 8765433 2 24888888877654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=99.70 E-value=2.2e-16 Score=165.08 Aligned_cols=233 Identities=18% Similarity=0.136 Sum_probs=154.2
Q ss_pred cchhhhhCCCCcCcccCcHHHHHHHHHHHHh-----CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC--CCCCCC
Q 036794 409 QNLTQKYMPRTFRDLVGQNLVAQALSNAVMR-----RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP--KPCGFC 481 (1152)
Q Consensus 409 ~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~-----gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~--epcg~c 481 (1152)
.+|...|+|+ .|+|++..++.|..+|.. +..+.++||+||||||||++|+.|++.+........ ..|..+
T Consensus 7 ~~l~~~y~p~---~l~~Re~ei~~l~~~l~~~l~~~~~~~~~lll~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~~~~~ 83 (276)
T d1fnna2 7 SVFSPSYVPK---RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIY 83 (276)
T ss_dssp GGGSTTCCCS---CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTC
T ss_pred ccCCCCCCCC---CCCCHHHHHHHHHHHHHHHHhCCCCCCCceEEECCCCCCHHHHHHHHHHHHhcccCCcEEEecchhh
Confidence 4677789875 569999888887777754 345568999999999999999999999865422110 001000
Q ss_pred CccccccCCCccceEEeCCCCCCCHHHHH-HHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh----CCCCEE
Q 036794 482 NSCISHDRGKSRNIKEVGPVGNFDFESIL-DLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR----APRRVV 556 (1152)
Q Consensus 482 ~~c~~i~~g~~~dviEIdaas~~~vdeIr-eLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe----pp~~Vi 556 (1152)
..................+........+. .+.+..... ....++++|+++.+.......+...+.. ....+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (276)
T d1fnna2 84 RNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRER---DLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIA 160 (276)
T ss_dssp CSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHT---TCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCCEE
T ss_pred hhhhhhhhhhHHhhhhhhhhhccchhHHHHHHHHHHhhc---ccccccchhHHHHhhhhhhhhHHHHHhccccccccceE
Confidence 00000000000000000111122233332 233333222 3457889999999988877766665543 456788
Q ss_pred EEEEcCCCC---cchHHHHccce--EEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHHHHh---------cCCCHH
Q 036794 557 FILVSSSLD---ALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLIASR---------SDGSLR 620 (1152)
Q Consensus 557 fILaTN~~d---kL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelLAe~---------s~GDLR 620 (1152)
||++++... .+.+.+.+|+. .+.|++++.+++.++|..+++.. ...+++++++.|++. +.||+|
T Consensus 161 ~i~~~~~~~~~~~~~~~~~~r~~~~~i~~~~~~~~e~~~il~~r~~~~~~~~~~~~~~l~~ia~~~~~~~~~~~~~G~~R 240 (276)
T d1fnna2 161 LVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDAR 240 (276)
T ss_dssp EEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHH
T ss_pred EeecCCchhhhhhcchhhhhhhcchhccccchhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHhhhhhhhhhcCCCHH
Confidence 888888753 56677888874 69999999999999999888763 445899999999886 479999
Q ss_pred HHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 621 DAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 621 ~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
.++++|+.+... ...|+.+||+++...
T Consensus 241 ~a~~ll~~a~~~A~~~~~~~I~~edv~~A~~~ 272 (276)
T d1fnna2 241 LAIDILYRSAYAAQQNGRKHIAPEDVRKSSKE 272 (276)
T ss_dssp HHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 999999987544 236999999987654
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.69 E-value=2.8e-16 Score=168.68 Aligned_cols=183 Identities=16% Similarity=0.182 Sum_probs=134.0
Q ss_pred CcCcccCcHHHHHHHHHHHHh-----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR-----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCIS 486 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~-----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~ 486 (1152)
+|+||+|.+.+++.|.+.+.. | ..+.+||||||||||||++|+++|++++...
T Consensus 2 ~~~dv~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~l~~ala~~~~~~~--------------- 66 (258)
T d1e32a2 2 GYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFF--------------- 66 (258)
T ss_dssp CGGGCCSCSHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCTTSSHHHHHHHHHHHTTCEE---------------
T ss_pred ChhhhccHHHHHHHHHHHHHHHhcCHHHHHhCCCCCCceeEEecCCCCCchHHHHHHHHHhCCeE---------------
Confidence 699999999999999887532 2 3456899999999999999999999987652
Q ss_pred ccCCCccceEEeCC------CCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-----------HHHHHHHHHh
Q 036794 487 HDRGKSRNIKEVGP------VGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-----------SWSAISKVVD 549 (1152)
Q Consensus 487 i~~g~~~dviEIda------as~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-----------aqnaLLklLE 549 (1152)
+.++. ........++.+++.+... .+.||||||+|.+... ..+.++..++
T Consensus 67 ---------~~i~~~~l~~~~~g~~~~~l~~~f~~A~~~----~p~il~iDeid~l~~~r~~~~~~~~~~~~~~~~~~~~ 133 (258)
T d1e32a2 67 ---------FLINGPEIMSKLAGESESNLRKAFEEAEKN----APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMD 133 (258)
T ss_dssp ---------EEECHHHHTTSCTTHHHHHHHHHHHHHHHT----CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHH
T ss_pred ---------EEEEchhhcccccccHHHHHHHHHHHHHhc----CCeEEEehhhhhhccCCCCCCCchHHHHHHHhccccc
Confidence 22221 1112245677777776543 3479999999998532 2344454444
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ...++++|++||.++.+++++++ |+. .|.|+.|+.+++..+++..+....+. ++..+..|+..+.| ..+++.
T Consensus 134 ~~~~~~~vlvi~tTn~~~~ld~al~r~gRfd~~i~~~~P~~~~R~~il~~~l~~~~~~-~~~~~~~la~~t~G~s~adl~ 212 (258)
T d1e32a2 134 GLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLA 212 (258)
T ss_dssp TCCCSSCEEEEEEESCGGGSCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSCBC-TTCCHHHHHHHCTTCCHHHHH
T ss_pred cccccCCccEEEeCCCccccchhhhhcccccceeECCCCCHHHHHHHhhhhccCcccc-cccchhhhhhcccCCCHHHHH
Confidence 3 45678999999999999999987 786 69999999999999999887654332 22237889999887 666666
Q ss_pred HHHHHHH
Q 036794 624 MTLEQLS 630 (1152)
Q Consensus 624 n~LEkLs 630 (1152)
++++.++
T Consensus 213 ~lv~~A~ 219 (258)
T d1e32a2 213 ALCSEAA 219 (258)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665543
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=99.64 E-value=3.4e-15 Score=156.70 Aligned_cols=234 Identities=21% Similarity=0.270 Sum_probs=143.3
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHH----HHHHhCCCCc----EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALS----NAVMRRKVGL----LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk----~aL~~gri~~----~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
.++|..+|+|. .|+|.+..++.|. ..+..+..+. .|+|+||||||||++++++++.+.........++.
T Consensus 6 ~~~l~~~~~P~---~~~~Re~e~~~l~~~l~~~~~~~~~~~~~~~~l~l~GppGtGKT~l~~~l~~~l~~~~~~~~~~~~ 82 (287)
T d1w5sa2 6 RRVFDENYIPP---ELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVK 82 (287)
T ss_dssp GGGGSTTCCCS---SCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred hhhcCCccCCC---CCCCHHHHHHHHHHHHHHHHHcCCCCCCcceEEEeECCCCCCHHHHHHHHHHHHHhhcccccCCce
Confidence 45788899985 4566655555544 4444444332 57889999999999999999998643222111100
Q ss_pred -CCCccccccCCCc---cceEEeC---CCCCCCHHHHHHHH-HHHhhCCCCCCceEEEEeCCCCCC------HHHHHHHH
Q 036794 480 -FCNSCISHDRGKS---RNIKEVG---PVGNFDFESILDLL-DNMVTSRPPSQYRIFVFDDCDTLS------PDSWSAIS 545 (1152)
Q Consensus 480 -~c~~c~~i~~g~~---~dviEId---aas~~~vdeIreLl-e~a~~~P~~a~~kVVIIDEID~Ls------~eaqnaLL 545 (1152)
.+..|........ ......+ .........+.+.+ +..... ....++++||+|.+. .+....|.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~~~~iide~d~l~~~~~~~~~~~~~l~ 159 (287)
T d1w5sa2 83 QAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVE---NHYLLVILDEFQSMLSSPRIAAEDLYTLL 159 (287)
T ss_dssp EEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHH---TCEEEEEEESTHHHHSCTTSCHHHHHHHH
T ss_pred eeeeccccccchhhHHHHHhhhcccccccccchHHHHHHHHHHHHHhc---cCccccceeEEEEeccccccchhHHHHHH
Confidence 0111111100000 0000000 01112222222222 222211 445788999998762 34455566
Q ss_pred HHHhhC-----CCCEEEEEEcCCCCc------chHHHHcc-ceEEEecCCChhHHHHHHHHHHHHc--CCCCCHHHHHHH
Q 036794 546 KVVDRA-----PRRVVFILVSSSLDA------LPHIIISR-CQKFFFPKMKDADIIYTLQWIASKE--GIEIDKDALKLI 611 (1152)
Q Consensus 546 klLEep-----p~~VifILaTN~~dk------L~~aL~SR-~qvI~F~~p~~~EI~eiL~~iakke--Gl~Id~dALelL 611 (1152)
.+++.. ...+.+|++++..+. ..+.+.+| +..+.|++++.+++.+++..+++.. ...+++++++++
T Consensus 160 ~l~~~l~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~r~~~~i~f~~y~~~el~~Il~~r~~~~~~~~~~~~~al~~i 239 (287)
T d1w5sa2 160 RVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELI 239 (287)
T ss_dssp THHHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHH
T ss_pred HHHHhcchhhcccceeEEeecccHHHHHHHHhhccchhcccceeeeccCCcHHHHHHHHhhhHHHhhccCCCCHHHHHHH
Confidence 555542 357777887775542 22445555 5689999999999999999998764 345899999999
Q ss_pred HHhc------CCCHHHHHHHHHHHHHh-----CCCCCHHHHHHHHhc
Q 036794 612 ASRS------DGSLRDAEMTLEQLSLL-----GQRISVPLVQELVGL 647 (1152)
Q Consensus 612 Ae~s------~GDLR~Ain~LEkLsLl-----g~~IT~EdV~elVg~ 647 (1152)
++.+ .||+|.++++|+.++.. .+.||.++|++++..
T Consensus 240 a~~~~~~~~~~gd~R~ai~~l~~a~~~A~~~~~~~It~~~V~~A~~e 286 (287)
T d1w5sa2 240 SDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 286 (287)
T ss_dssp HHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred HHHHhccccCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHhc
Confidence 9875 69999999999987544 246999999988753
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.62 E-value=2.5e-16 Score=169.89 Aligned_cols=192 Identities=19% Similarity=0.229 Sum_probs=129.0
Q ss_pred CC-CcCcccCcHHHHHHHHHHHHh-----------C-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCc
Q 036794 417 PR-TFRDLVGQNLVAQALSNAVMR-----------R-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNS 483 (1152)
Q Consensus 417 P~-sFddLVGQe~v~q~Lk~aL~~-----------g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~ 483 (1152)
|+ +|+||+|.+++++.|.+.+.. | ..+.+||||||||||||++|+++|.++++..... .
T Consensus 2 p~~~f~di~G~~~~k~~l~~~i~~~l~~~~~~~~~g~~~~~giLL~Gp~GtGKT~l~~ala~~~~~~~~~~--------~ 73 (265)
T d1r7ra3 2 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISI--------K 73 (265)
T ss_dssp CCCSCSSCSSSSCCCCHHHHHTHHHHHCHHHHHHCCCCCCCEEEEBCCTTSSHHHHHHHHHHHTTCEEEEE--------C
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhCCCCCCCeEEEECCCCCcchhHHHHHHHHhCCcEEEE--------E
Confidence 44 899999998887777765531 2 3345899999999999999999999998652111 0
Q ss_pred cccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH--------------HHHHHHHHHh
Q 036794 484 CISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD--------------SWSAISKVVD 549 (1152)
Q Consensus 484 c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~e--------------aqnaLLklLE 549 (1152)
|..+. ..........++.++..+... .+.||+|||+|.+... ..+.|+..|+
T Consensus 74 ~~~l~----------~~~~~~~~~~l~~~f~~A~~~----~p~il~ideid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~ 139 (265)
T d1r7ra3 74 GPELL----------TMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMD 139 (265)
T ss_dssp HHHHH----------TSCTTTHHHHHHHHHHHHHHT----CSEEEEESSGGGTCCHHHHCCCTTHHHHHHHHHHHHHTCC
T ss_pred HHHhh----------hccccchHHHHHHHHHHHHhc----CCcceeHHhhhhccccCCCcCCCCcHHHHHHHHHHHHHhh
Confidence 10100 011112345677777776543 3489999999987421 3456777776
Q ss_pred h--CCCCEEEEEEcCCCCcchHHHHc--cce-EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHH
Q 036794 550 R--APRRVVFILVSSSLDALPHIIIS--RCQ-KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDG-SLRDAE 623 (1152)
Q Consensus 550 e--pp~~VifILaTN~~dkL~~aL~S--R~q-vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~G-DLR~Ai 623 (1152)
. ...+++||++||.++.+++++++ |+. .|.|++|+.+++.++++..+++.... .+..++.|+..+.| +.+++.
T Consensus 140 ~~~~~~~v~vi~ttn~~~~ld~al~r~gRf~~~i~~~~p~~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~g~s~~di~ 218 (265)
T d1r7ra3 140 GMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLT 218 (265)
T ss_dssp ------CCEEEECCBSCTTTSCGGGSSTTSEEEEECCCCCCHHHHHHHHHHTTCC-----CCCCHHHHHHHCSSCCHHHH
T ss_pred CcCCCCCEEEEEeCCCchhCCHHHhCCCCccEEEEecchHHHHHHHHHHHHhccCCch-hhhhHHHHHhcCCCCCHHHHH
Confidence 4 23468999999999999999986 677 59999999999999998776543221 11235677777665 556666
Q ss_pred HHHHHHHH
Q 036794 624 MTLEQLSL 631 (1152)
Q Consensus 624 n~LEkLsL 631 (1152)
++++.+..
T Consensus 219 ~lv~~A~~ 226 (265)
T d1r7ra3 219 EICQRACK 226 (265)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665543
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=99.60 E-value=5.1e-15 Score=158.24 Aligned_cols=196 Identities=15% Similarity=0.168 Sum_probs=137.2
Q ss_pred cccCcHHHHHHHHHHHHh-CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCC
Q 036794 422 DLVGQNLVAQALSNAVMR-RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGP 500 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIda 500 (1152)
++||++.+++.+.+.+.. ......+||+||+|||||++|++|+......... ++.++.
T Consensus 1 ~~v~~S~~~~~~~~~~~~~a~~~~pvlI~Ge~GtGK~~~A~~ih~~s~~~~~~---------------------~~~~~~ 59 (247)
T d1ny5a2 1 EYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEP---------------------FVALNV 59 (247)
T ss_dssp CCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSC---------------------EEEEET
T ss_pred CeEecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCcccc---------------------cccchh
Confidence 579999999988887776 5555668999999999999999999764432111 111111
Q ss_pred CCCCCHHHHHH------------------HHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC-----------
Q 036794 501 VGNFDFESILD------------------LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA----------- 551 (1152)
Q Consensus 501 as~~~vdeIre------------------Lle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep----------- 551 (1152)
........... +++. ++++++||||+|.|+...|..|+++|++.
T Consensus 60 ~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~l~~-------a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~~~~~~~ 132 (247)
T d1ny5a2 60 ASIPRDIFEAELFGYEKGAFTGAVSSKEGFFEL-------ADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEI 132 (247)
T ss_dssp TTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHH-------TTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBE
T ss_pred hhhhhcccHHHhcCcccCCcCCcccccCCHHHc-------cCCCEEEEeChHhCCHHHHHHHHHHHHhCCEEECCCCCce
Confidence 10000000011 1222 45679999999999999999999999862
Q ss_pred CCCEEEEEEcCCCC-------cchHHHHccce--EEEecCCCh--hHHHHHHHH----HHHHcCC---CCCHHHHHHHHH
Q 036794 552 PRRVVFILVSSSLD-------ALPHIIISRCQ--KFFFPKMKD--ADIIYTLQW----IASKEGI---EIDKDALKLIAS 613 (1152)
Q Consensus 552 p~~VifILaTN~~d-------kL~~aL~SR~q--vI~F~~p~~--~EI~eiL~~----iakkeGl---~Id~dALelLAe 613 (1152)
..++++|++|+..- .+.+.|..|+. .|.+|++.. +++..++.. .+.+.+. .++++|++.|..
T Consensus 133 ~~~~RlI~~s~~~l~~l~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~ls~~al~~L~~ 212 (247)
T d1ny5a2 133 EVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLS 212 (247)
T ss_dssp ECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHH
T ss_pred ecCeEEEEecCCCHHHHHHcCCCcHHHHhhcCeeeecCCChhhchhhHhhhhhhhhhhhhhhcCCCCCCCCHHHHHHHHh
Confidence 13678999887531 36667888866 466666643 456554444 4444444 479999999999
Q ss_pred h-cCCCHHHHHHHHHHHHHh--CCCCCHHHHHHHH
Q 036794 614 R-SDGSLRDAEMTLEQLSLL--GQRISVPLVQELV 645 (1152)
Q Consensus 614 ~-s~GDLR~Ain~LEkLsLl--g~~IT~EdV~elV 645 (1152)
+ |+||++++.+.+++++.. +..|+.+|+..++
T Consensus 213 ~~WPGNl~EL~~~l~~a~~~~~~~~I~~~dl~~l~ 247 (247)
T d1ny5a2 213 YPWYGNVRELKNVIERAVLFSEGKFIDRGELSCLV 247 (247)
T ss_dssp SCCTTHHHHHHHHHHHHHHHCCSSEECHHHHHHHC
T ss_pred CCCCCHHHHHHHHHHHHHHhCCCCeECHHHccccC
Confidence 9 999999999999998777 4459999988763
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.53 E-value=2.9e-14 Score=157.30 Aligned_cols=205 Identities=19% Similarity=0.286 Sum_probs=135.4
Q ss_pred ccchhhhhCCCCcCcccCcHHHHHHHHHHHHh--------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCC
Q 036794 408 HQNLTQKYMPRTFRDLVGQNLVAQALSNAVMR--------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCG 479 (1152)
Q Consensus 408 ~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~--------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg 479 (1152)
...+.+... ..++||+++++.|..++.. .+....+||+||+|+|||.+|+.||+.++.....
T Consensus 13 l~~l~~~L~----~~viGQ~~a~~~v~~~v~~~~~~l~~~~~p~~~~lf~Gp~GvGKT~lak~la~~l~~~~i~------ 82 (315)
T d1r6bx3 13 LKNLGDRLK----MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLR------ 82 (315)
T ss_dssp HHHHHHHHT----TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEE------
T ss_pred HHHHHHHhC----CeecChHHHHHHHHHHHHHHHccCCCCCCCceEEEEECCCcchhHHHHHHHHhhccCCeeE------
Confidence 444555554 6799999999999988853 1222379999999999999999999998754211
Q ss_pred CCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh---------
Q 036794 480 FCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------- 550 (1152)
Q Consensus 480 ~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------- 550 (1152)
..|..+....+.....-.+.++.+.+.-..+...+... .+.||++||+|+++++.++.|+++|++
T Consensus 83 --~d~s~~~~~~~~~~l~g~~~gy~g~~~~~~l~~~~~~~----~~~vvl~DeieKa~~~V~~~lLqild~G~ltd~~Gr 156 (315)
T d1r6bx3 83 --FDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGR 156 (315)
T ss_dssp --EEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTE
T ss_pred --eccccccchhhhhhhcccCCCccccccCChhhHHHHhC----ccchhhhcccccccchHhhhhHHhhccceecCCCCC
Confidence 11112211111000001122333333323344444443 358999999999999999999999987
Q ss_pred --CCCCEEEEEEcCCC-------------------------CcchHHHHccce-EEEecCCChhHHHHHHHHHHH-----
Q 036794 551 --APRRVVFILVSSSL-------------------------DALPHIIISRCQ-KFFFPKMKDADIIYTLQWIAS----- 597 (1152)
Q Consensus 551 --pp~~VifILaTN~~-------------------------dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~iak----- 597 (1152)
.-.++++|+++|-- ..+.|.++.|+. ++.|.+++.+++..++...+.
T Consensus 157 ~vdf~n~iiI~Tsnig~~~i~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~ii~f~~l~~~~~~~I~~~~l~~~~~~ 236 (315)
T d1r6bx3 157 KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ 236 (315)
T ss_dssp EEECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH
T ss_pred ccCccceEEEeccchhhHHHHhhhccchhhhhhHhHHHHHHHhcCHHHHhhhhhhhcccchhhhHHHHHHHHHHHHHHHH
Confidence 33688899998721 126778999998 688999999988877655443
Q ss_pred --HcC--CCCCHHHHHHHHHhc--C-CCHHHHHHHHHH
Q 036794 598 --KEG--IEIDKDALKLIASRS--D-GSLRDAEMTLEQ 628 (1152)
Q Consensus 598 --keG--l~Id~dALelLAe~s--~-GDLR~Ain~LEk 628 (1152)
..+ +.++++|+++|+... . -..|.+.+.+++
T Consensus 237 l~~~~i~l~~~~~a~~~l~~~~yd~~~GaR~L~r~Ie~ 274 (315)
T d1r6bx3 237 LDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQD 274 (315)
T ss_dssp HHHTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHHHHH
T ss_pred HHhcCcchhhHHHHHHHHHHhCCCCCCChhhHHHHHHH
Confidence 223 458999999999862 1 134555555554
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.51 E-value=1.2e-14 Score=160.70 Aligned_cols=212 Identities=20% Similarity=0.296 Sum_probs=133.2
Q ss_pred ccccccchhhhhCCCCcCcccCcHHHHHHHHHHHHhC--------CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCC
Q 036794 404 RNGRHQNLTQKYMPRTFRDLVGQNLVAQALSNAVMRR--------KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQP 475 (1152)
Q Consensus 404 ~~~~~~~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~g--------ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~ 475 (1152)
.......+.+..+ ..|+||+++++.+.+++... +....+||+||+|+|||.+|+.||+.+.......
T Consensus 10 ~~~~l~~l~~~L~----~~v~GQ~~ai~~v~~~i~~~~~~l~~~~kp~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~- 84 (315)
T d1qvra3 10 EREKLLRLEEELH----KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM- 84 (315)
T ss_dssp HHHHHHSHHHHHH----HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGE-
T ss_pred HHHHHHHHHHHhc----CeEeCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCcchHHHHHHHHHHHhcCCCcce-
Confidence 3333444445543 56899999999998888642 1223789999999999999999999985332111
Q ss_pred CCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh-----
Q 036794 476 KPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR----- 550 (1152)
Q Consensus 476 epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe----- 550 (1152)
.+..|..+..........-.+.++.+.+.-..+.+.+...| +.||++||+|+++++.++.|++++++
T Consensus 85 ----~~~~~~~~~~~~~~~~L~g~~~gyvG~~~~~~l~~~~~~~p----~~Vvl~DEieK~~~~v~~~ll~~l~~g~~~~ 156 (315)
T d1qvra3 85 ----IRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP----YSVILFDEIEKAHPDVFNILLQILDDGRLTD 156 (315)
T ss_dssp ----EEECTTTCCSSGGGGGC--------------CHHHHHHHCS----SEEEEESSGGGSCHHHHHHHHHHHTTTEECC
T ss_pred ----EEEeccccccchhhhhhcCCCCCCcCcccCChHHHHHHhCC----CcEEEEehHhhcCHHHHHHHHHHhccCceeC
Confidence 01111111111110011111223344333334555555444 58999999999999999999999987
Q ss_pred ------CCCCEEEEEEcCC--------------------------CCcchHHHHccceE-EEecCCChhHHHHHHHHHHH
Q 036794 551 ------APRRVVFILVSSS--------------------------LDALPHIIISRCQK-FFFPKMKDADIIYTLQWIAS 597 (1152)
Q Consensus 551 ------pp~~VifILaTN~--------------------------~dkL~~aL~SR~qv-I~F~~p~~~EI~eiL~~iak 597 (1152)
...+++||++||- .+.+.+.+..|+.. +.|.+++.+++..++...+.
T Consensus 157 ~~gr~v~~~~~i~i~tsnlG~~~i~~~~~~~~~~~~~~~~~~~~l~~~f~pEflnRid~Ii~F~~L~~~~~~~I~~~~l~ 236 (315)
T d1qvra3 157 SHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLS 236 (315)
T ss_dssp SSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHH
T ss_pred CCCcEecCcceEEEEecccChHHHhhhcccccchhhhhHHHHHHHHhhcCHHHHhcCCeeeeccchhhhhhHHHHHHHHH
Confidence 2357889999883 12377789999984 68999999998887765443
Q ss_pred H-------cC--CCCCHHHHHHHHHhc-CC--CHHHHHHHHHH
Q 036794 598 K-------EG--IEIDKDALKLIASRS-DG--SLRDAEMTLEQ 628 (1152)
Q Consensus 598 k-------eG--l~Id~dALelLAe~s-~G--DLR~Ain~LEk 628 (1152)
+ .+ +.++++++++|++.. .- ..|.+...+++
T Consensus 237 ~l~~rl~~~~i~l~i~~~~~~~L~~~~y~~~~GAR~L~r~Ie~ 279 (315)
T d1qvra3 237 YLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRVIQR 279 (315)
T ss_dssp HHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHH
T ss_pred HHHHHHHhccccccccHHHHHHHHHhCCCCCCCcchHHHHHHH
Confidence 2 33 458999999999872 11 23555555555
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=99.44 E-value=5.6e-13 Score=139.17 Aligned_cols=184 Identities=14% Similarity=0.193 Sum_probs=127.1
Q ss_pred CcCccc-C--cHHHHHHHHHHHHhCC-CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc
Q 036794 419 TFRDLV-G--QNLVAQALSNAVMRRK-VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN 494 (1152)
Q Consensus 419 sFddLV-G--Qe~v~q~Lk~aL~~gr-i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d 494 (1152)
+|++++ | ++.+...+.+++.... ....++||||+|+|||++++++++++..... .
T Consensus 8 tFdnF~vg~~N~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKTHLl~A~~~~~~~~~~---------------------~ 66 (213)
T d1l8qa2 8 TLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGY---------------------R 66 (213)
T ss_dssp CSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTC---------------------C
T ss_pred ChhhccCCCcHHHHHHHHHHHHhCcCCCCCcEEEECCCCCcHHHHHHHHHHHhccCcc---------------------c
Confidence 799965 5 6677788888776532 2234789999999999999999999764321 0
Q ss_pred eEEeCCCCCC-------CHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--HHHHHHHHHHHhh-CCCCEEEEEEcCC-
Q 036794 495 IKEVGPVGNF-------DFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--PDSWSAISKVVDR-APRRVVFILVSSS- 563 (1152)
Q Consensus 495 viEIdaas~~-------~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls--~eaqnaLLklLEe-pp~~VifILaTN~- 563 (1152)
+..+...... ......++.+.. ....+|+||++|.+. ...+..|..+++. ......+|++++.
T Consensus 67 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dll~iDDi~~i~~~~~~~~~lf~lin~~~~~~~~iiits~~~ 140 (213)
T d1l8qa2 67 VIYSSADDFAQAMVEHLKKGTINEFRNMY------KSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASDRH 140 (213)
T ss_dssp EEEEEHHHHHHHHHHHHHHTCHHHHHHHH------HTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred eEEechHHHHHHHHHHHHccchhhHHHHH------hhccchhhhhhhhhcCchHHHHHHHHHHHHHhhccceEEEecCCc
Confidence 2222110000 000011122222 234799999999985 4456677777765 2244556666654
Q ss_pred CC---cchHHHHccce---EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Q 036794 564 LD---ALPHIIISRCQ---KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIASRSDGSLRDAEMTLEQLSL 631 (1152)
Q Consensus 564 ~d---kL~~aL~SR~q---vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLAe~s~GDLR~Ain~LEkLsL 631 (1152)
|. .+.+.|.+|+. .+.++ |+.+++.++|+..+...|+.++++++++|+.+. .|+|++...|.++.+
T Consensus 141 p~~l~~~~~dL~SRL~~g~~~~i~-p~d~~~~~iL~~~a~~rgl~l~~~v~~yl~~~~-~~~R~L~~~l~~l~l 212 (213)
T d1l8qa2 141 PQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL 212 (213)
T ss_dssp GGGCTTSCHHHHHHHHTSEEEECC-CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred chhccccchHHHHHhhCceEEEEC-CCcHHHHHHHHHHHHHcCCCCCHHHHHHHHHhc-CcHHHHHHHHHHhhc
Confidence 32 35677999876 67775 577889999999999999999999999999997 689999999998764
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=99.42 E-value=2.2e-12 Score=141.97 Aligned_cols=228 Identities=15% Similarity=0.178 Sum_probs=131.2
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHc-------ccCCCCCCCCCCCCccccccCCC
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALN-------CQSLEQPKPCGFCNSCISHDRGK 491 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~-------~~~~e~~epcg~c~~c~~i~~g~ 491 (1152)
-|.+|+||+.++..|.-++..... |++||+||||||||++|+.++..|. +..... +...|..+.......
T Consensus 5 ~f~~I~Gq~~~kral~laa~~~~~-h~vLl~G~pG~GKT~lar~~~~iLp~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 81 (333)
T d1g8pa_ 5 PFSAIVGQEDMKLALLLTAVDPGI-GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSP--NVEMIPDWATVLSTN 81 (333)
T ss_dssp CGGGSCSCHHHHHHHHHHHHCGGG-CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCS--SGGGSCTTCCCSCCC
T ss_pred ChhhccCcHHHHHHHHHHHhccCC-CeEEEECCCCccHHHHHHHHHHhCCCchhhccCccccC--ccccccchhhccccC
Confidence 599999999999987765542222 4589999999999999999998762 211110 001111111110000
Q ss_pred ----ccceEEeCCCCCCCHHHH------HHHHHHHhhCCCC-----CCceEEEEeCCCCCCHHHHHHHHHHHhhC-----
Q 036794 492 ----SRNIKEVGPVGNFDFESI------LDLLDNMVTSRPP-----SQYRIFVFDDCDTLSPDSWSAISKVVDRA----- 551 (1152)
Q Consensus 492 ----~~dviEIdaas~~~vdeI------reLle~a~~~P~~-----a~~kVVIIDEID~Ls~eaqnaLLklLEep----- 551 (1152)
...+..... ....+.+ ...+..-...+.. +.++|+||||++.+++..+++|+..||+.
T Consensus 82 ~~~~~~~~~~~~~--~~~~~~l~G~~d~~~~~~~g~~~~~~G~l~~A~~gvl~iDEi~~~~~~~~~aLl~~me~~~v~i~ 159 (333)
T d1g8pa_ 82 VIRKPTPVVDLPL--GVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVE 159 (333)
T ss_dssp EEEECCCEEEECT--TCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEEC
T ss_pred cccccCceeeccC--CCCcccccCcchhhhccccCcceeeccccccccccEeecccHHHHHHHHHHHHhhhhcCCeEEec
Confidence 011111111 1111111 1111111111111 34689999999999999999999999972
Q ss_pred --------CCCEEEEEEcCCC-CcchHHHHccceE-EEecCCChh-HHHHHHHH--------------------------
Q 036794 552 --------PRRVVFILVSSSL-DALPHIIISRCQK-FFFPKMKDA-DIIYTLQW-------------------------- 594 (1152)
Q Consensus 552 --------p~~VifILaTN~~-dkL~~aL~SR~qv-I~F~~p~~~-EI~eiL~~-------------------------- 594 (1152)
|.++.+|+++|-. ..+++++++|+.. +.+..+... +....+..
T Consensus 160 r~g~~~~~p~~f~liaa~Np~~~~l~~~llDRf~~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (333)
T d1g8pa_ 160 RDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQI 239 (333)
T ss_dssp CTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCceecCCCCEEEEEecCccccccccchhhhhcceeeccCcchhhHHHHHHHhhhhcccChHHHHHHHHHHHHHHHHHH
Confidence 3556666666643 4799999999984 666655432 11111110
Q ss_pred ---HHHHcCCCCCHHHHHHHHHh---cCC-CHHHHHHHHHHH---HHhC--CCCCHHHHHHHHhccchh
Q 036794 595 ---IASKEGIEIDKDALKLIASR---SDG-SLRDAEMTLEQL---SLLG--QRISVPLVQELVGLISDE 651 (1152)
Q Consensus 595 ---iakkeGl~Id~dALelLAe~---s~G-DLR~Ain~LEkL---sLlg--~~IT~EdV~elVg~v~ee 651 (1152)
...-..+.++++....++.. .+. ++|....++.-+ +.+. ..|+.+||.+++..+...
T Consensus 240 ~~~~~~l~~v~~~~~~~~~~~~~~~~~~~~S~R~~~~llrvArtiA~L~gr~~V~~~di~~a~~lvL~h 308 (333)
T d1g8pa_ 240 LEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 308 (333)
T ss_dssp HHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHhhcccceecCHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHh
Confidence 00112456777776666555 223 678777666443 3443 359999999977655443
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=99.40 E-value=9.5e-13 Score=140.28 Aligned_cols=183 Identities=17% Similarity=0.227 Sum_probs=110.9
Q ss_pred cCcccCcHHHHHHHHH-------HHHhCC--CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 420 FRDLVGQNLVAQALSN-------AVMRRK--VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~-------aL~~gr--i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
...|||+...++.+.. .++.+. ....+|||||||||||++|+++|++++....... |.....+
T Consensus 8 ~~~~i~~~~~i~~i~~~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~la~alA~~~~~~~~~i~--------~~~~~~g 79 (246)
T d1d2na_ 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC--------SPDKMIG 79 (246)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE--------CGGGCTT
T ss_pred ccCCcCcCHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECcCCCCHHHHHHHHhhcccccccccc--------ccccccc
Confidence 4568886544433332 223332 3357999999999999999999999886522110 0000000
Q ss_pred CccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCC----------HHHHHHHHHHHhhCC---CCEEE
Q 036794 491 KSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLS----------PDSWSAISKVVDRAP---RRVVF 557 (1152)
Q Consensus 491 ~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls----------~eaqnaLLklLEepp---~~Vif 557 (1152)
. ........++++++.+... .+.||||||+|.+. ....+.|+..++... .+++|
T Consensus 80 ~---------~~~~~~~~i~~if~~A~~~----~p~il~iDEid~l~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~v 146 (246)
T d1d2na_ 80 F---------SETAKCQAMKKIFDDAYKS----QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLI 146 (246)
T ss_dssp C---------CHHHHHHHHHHHHHHHHTS----SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEE
T ss_pred c---------cccchhhhhhhhhhhhhhc----ccceeehhhhhhHhhhcccccchhHHHHHHHHHHhcCCCccccceee
Confidence 0 0011134577788877543 35799999998752 334567888887643 35888
Q ss_pred EEEcCCCCcchHH-HHccce-EEEecCCChh-HHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-----CHHHHHHHHHH
Q 036794 558 ILVSSSLDALPHI-IISRCQ-KFFFPKMKDA-DIIYTLQWIASKEGIEIDKDALKLIASRSDG-----SLRDAEMTLEQ 628 (1152)
Q Consensus 558 ILaTN~~dkL~~a-L~SR~q-vI~F~~p~~~-EI~eiL~~iakkeGl~Id~dALelLAe~s~G-----DLR~Ain~LEk 628 (1152)
|++||.++.+++. +.+|+. .|.|+.+... ++...+. .. ..+++..+..++..+.| .++.+++.++.
T Consensus 147 i~tTn~~~~ld~~~~~~rF~~~i~~P~~~~r~~il~~l~----~~-~~~~~~~~~~i~~~~~g~~~~~~ik~ll~~ie~ 220 (246)
T d1d2na_ 147 IGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALE----LL-GNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEM 220 (246)
T ss_dssp EEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHH----HH-TCSCHHHHHHHHHHHTTSEEEECHHHHHHHHHH
T ss_pred eeccCChhhccchhhcCccceEEecCCchhHHHHHHHHH----hc-cCCChHHHHHHHHHcCCCccchhHHHHHHHHHH
Confidence 9999999888764 667776 4777555432 3333332 22 24667777777777655 35555555443
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=99.40 E-value=4.1e-13 Score=147.44 Aligned_cols=156 Identities=22% Similarity=0.222 Sum_probs=102.4
Q ss_pred cccCcHHHHHHHHHHHHh-------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCcccccc
Q 036794 422 DLVGQNLVAQALSNAVMR-------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHD 488 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~ 488 (1152)
.|+||+++++.|..++.. ...+.++||+||||||||++|+++|+.++... ..++
T Consensus 15 ~ViGQd~A~~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GPpG~GKT~lAkalA~~~~~~~-------------~~i~ 81 (309)
T d1ofha_ 15 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPF-------------IKVE 81 (309)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCE-------------EEEE
T ss_pred cccChHHHHHHHHHHHHHHHHHhccCCCCccCCCCceEEEECCCCCCHHHHHHHHhhccccch-------------hccc
Confidence 378999999999988832 12446799999999999999999999986432 1222
Q ss_pred CCCccceEEeCCCCCCCHHHHHHHHHHHhhCCC-CCCceEEEEeCCCCCCHH------------HHHHHHHHHhh-----
Q 036794 489 RGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP-PSQYRIFVFDDCDTLSPD------------SWSAISKVVDR----- 550 (1152)
Q Consensus 489 ~g~~~dviEIdaas~~~vdeIreLle~a~~~P~-~a~~kVVIIDEID~Ls~e------------aqnaLLklLEe----- 550 (1152)
.+...+...+ .......++.++..+..... ...+.||||||+|.+.+. .++.||..++.
T Consensus 82 ~s~~~~~~~~---~~~~~~~~~~~f~~a~~~~~~~~~~~IIf~DEIdki~~~~~~~~~~~~~~gv~~~LL~~~dg~~~~~ 158 (309)
T d1ofha_ 82 ATKFTEVGYV---GKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVST 158 (309)
T ss_dssp GGGGSSCCSG---GGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEE
T ss_pred ccccccceeE---eeeccccccccchhhhcccccccCCceEEehhhhhhhhhccCcccchhhhHHHHHhhHHhcCCEEec
Confidence 2222111111 11112335555544321100 012479999999998642 46678888875
Q ss_pred -----CCCCEEEEEE----cCCCCcchHHHHccceE-EEecCCChhHHHHHHH
Q 036794 551 -----APRRVVFILV----SSSLDALPHIIISRCQK-FFFPKMKDADIIYTLQ 593 (1152)
Q Consensus 551 -----pp~~VifILa----TN~~dkL~~aL~SR~qv-I~F~~p~~~EI~eiL~ 593 (1152)
...++.||++ ++.+..+.++++.|+.. +.|++|+..++.+++.
T Consensus 159 ~~~~i~~s~ilfi~~ga~~~~~~~~~~p~l~~R~~~~i~~~~~~~~~~~~Il~ 211 (309)
T d1ofha_ 159 KHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILT 211 (309)
T ss_dssp TTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHH
T ss_pred CCeEEEccceeEEeccchhhcCcccchhhhhhhhheeeeccCCCHHHHHHHHH
Confidence 1234667665 35667789999999974 8899999998888753
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.39 E-value=3.4e-12 Score=137.88 Aligned_cols=216 Identities=15% Similarity=0.142 Sum_probs=153.2
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
|.++-+-..++.++|.+..+..|...+.+.... .+||.||||+|||++++.+|+.+.....+.. .
T Consensus 8 lt~~a~~~~ld~~igRd~Ei~~l~~iL~r~~k~-n~lLVG~~GvGKTalv~~la~ri~~~~vp~~--------------l 72 (268)
T d1r6bx2 8 LNQLARVGGIDPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGDVPEV--------------M 72 (268)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSC-EEEEECCTTSSHHHHHHHHHHHHHHTCSCGG--------------G
T ss_pred HHHHHHcCCCCcccChHHHHHHHHHHHhcCccC-CcEEECCCCCcHHHHHHHHHHHHHhCCcccc--------------c
Confidence 444444456788999999999999999776655 4789999999999999999998765432211 1
Q ss_pred CccceEEeCCC------CC-CCHH-HHHHHHHHHhhCCCCCCceEEEEeCCCCCC---------HHHHHHHHHHHhhCCC
Q 036794 491 KSRNIKEVGPV------GN-FDFE-SILDLLDNMVTSRPPSQYRIFVFDDCDTLS---------PDSWSAISKVVDRAPR 553 (1152)
Q Consensus 491 ~~~dviEIdaa------s~-~~vd-eIreLle~a~~~P~~a~~kVVIIDEID~Ls---------~eaqnaLLklLEepp~ 553 (1152)
....+++++.. .. ..++ .+..+++.+.. .+..|+||||+|.+. .++.+.|..+|.. .
T Consensus 73 ~~~~i~~l~~~~liag~~~~g~~e~r~~~i~~~~~~----~~~iIlfiDeih~l~~~g~~~g~~~d~a~~Lkp~L~r--g 146 (268)
T d1r6bx2 73 ADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSS--G 146 (268)
T ss_dssp TTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSS--C
T ss_pred ccceeEEeeechHhccCccchhHHHHHHHHHHHhhc----cCCceEEecchHHHhcCCCCCCccccHHHHhhHHHhC--C
Confidence 11224444422 11 2233 36667777642 344789999999983 2345566667764 6
Q ss_pred CEEEEEEcCCC-----CcchHHHHccceEEEecCCChhHHHHHHHHHH----HHcCCCCCHHHHHHHHHhc------CCC
Q 036794 554 RVVFILVSSSL-----DALPHIIISRCQKFFFPKMKDADIIYTLQWIA----SKEGIEIDKDALKLIASRS------DGS 618 (1152)
Q Consensus 554 ~VifILaTN~~-----dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~ia----kkeGl~Id~dALelLAe~s------~GD 618 (1152)
.+.+|++|+.. -.-.++|.+||++|.+.+|+.++...+|.... ...++.++++++..++..+ ..-
T Consensus 147 ~i~vIgatT~eey~~~~e~d~al~rrF~~I~V~Eps~e~t~~IL~~~~~~~e~~h~v~~~~~al~~~v~ls~ryi~~~~~ 226 (268)
T d1r6bx2 147 KIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHL 226 (268)
T ss_dssp CCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCT
T ss_pred CCeEEEeCCHHHHHHHHhhcHHHHhhhcccccCCCCHHHHHHHHHHhhHHHhccCCEEeChHHHHHHHHHHHhhccCCCC
Confidence 88899988732 23567799999999999999999998887654 3468999999998887763 235
Q ss_pred HHHHHHHHHHHHHh---------CCCCCHHHHHHHHhc
Q 036794 619 LRDAEMTLEQLSLL---------GQRISVPLVQELVGL 647 (1152)
Q Consensus 619 LR~Ain~LEkLsLl---------g~~IT~EdV~elVg~ 647 (1152)
+..++..|+.++.. ...|+.+||+.++..
T Consensus 227 PdKAIdllDea~a~~~~~~~~~~~~~i~~~di~~~i~~ 264 (268)
T d1r6bx2 227 PDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVAR 264 (268)
T ss_dssp THHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHhhccccCcccCCHHHHHHHHHH
Confidence 77899999987543 123788888777654
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=99.35 E-value=2.6e-12 Score=144.31 Aligned_cols=192 Identities=20% Similarity=0.192 Sum_probs=120.8
Q ss_pred cccCcHHHHHHHHHHHHh-----------------------------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCC
Q 036794 422 DLVGQNLVAQALSNAVMR-----------------------------RKVGLLYVFYGPHGTGKTSCARIFARALNCQSL 472 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~-----------------------------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~ 472 (1152)
.||||+++++.+..++.. ...+..+||.||+|+|||.+|++||+.++...
T Consensus 18 ~ViGQd~Akkava~Avrn~~rR~~~~~~~r~~~~~~~~~~~~~~~~~~~p~~niLfiGPTGvGKTElAk~LA~~~~~~~- 96 (364)
T d1um8a_ 18 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI- 96 (364)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE-
T ss_pred eecChHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccCCCcceeeeCCCCccHHHHHHHHHhhcccce-
Confidence 489999999999887731 33455799999999999999999999864331
Q ss_pred CCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCC--------------CCH
Q 036794 473 EQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDT--------------LSP 538 (1152)
Q Consensus 473 e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~--------------Ls~ 538 (1152)
..+++..+....++ +.---..+.+++......-...++++|++||++. ..+
T Consensus 97 ------------ir~D~s~~~e~gyv---g~dv~~~i~~l~~~~~~~v~~~~~~iv~lDEieK~~~~s~~~~~~~d~a~~ 161 (364)
T d1um8a_ 97 ------------AISDATSLTEAGYV---GEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGE 161 (364)
T ss_dssp ------------EEEEGGGCC-----------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CH
T ss_pred ------------eehhhhhcccchhh---HhhhccchhhhhhhchhHHHHhhcccchhhhhhhhccccccccccccccch
Confidence 11222222222221 1111234555554431111123568999999999 556
Q ss_pred HHHHHHHHHHhhC-------------CCCEEEEEEcCC------------------------------------------
Q 036794 539 DSWSAISKVVDRA-------------PRRVVFILVSSS------------------------------------------ 563 (1152)
Q Consensus 539 eaqnaLLklLEep-------------p~~VifILaTN~------------------------------------------ 563 (1152)
..++.||++|+.. ..+.++|.++|-
T Consensus 162 ~V~~~lLqild~~~~~~~~~~gr~~~~~~~i~i~t~~i~~~~~ga~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 241 (364)
T d1um8a_ 162 GVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHL 241 (364)
T ss_dssp HHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGG
T ss_pred HHHHhhhhhhcCceeccCCCCCCcCCcceeEEEeehhhhhhhcccchhhhhhhhhhcccccccccccccchhhhhhhhcc
Confidence 7899999999951 123334333321
Q ss_pred -------CCcchHHHHccce-EEEecCCChhHHHHHHHH-----------HHHHcCC--CCCHHHHHHHHHh---cCCCH
Q 036794 564 -------LDALPHIIISRCQ-KFFFPKMKDADIIYTLQW-----------IASKEGI--EIDKDALKLIASR---SDGSL 619 (1152)
Q Consensus 564 -------~dkL~~aL~SR~q-vI~F~~p~~~EI~eiL~~-----------iakkeGl--~Id~dALelLAe~---s~GDL 619 (1152)
...+.|.++.|+. ++.|.+++.+++.+++.. .+..+|+ .++++|+++|+.. -.-..
T Consensus 242 ~~~~~~~~~~f~PEf~gRi~~iv~f~~L~~~~l~~Il~~~~~~l~kq~~~~l~~~gi~L~~td~a~~~la~~g~d~~~GA 321 (364)
T d1um8a_ 242 VQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGA 321 (364)
T ss_dssp CCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTG
T ss_pred ccHHHHhhhhhHHHHHHHhcchhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhccCCCCCc
Confidence 0015677999998 488999999999888752 2334566 4789999999997 22346
Q ss_pred HHHHHHHHHH
Q 036794 620 RDAEMTLEQL 629 (1152)
Q Consensus 620 R~Ain~LEkL 629 (1152)
|.+..+++++
T Consensus 322 R~L~riie~~ 331 (364)
T d1um8a_ 322 RGLRAIIEDF 331 (364)
T ss_dssp GGHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 6666666664
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=99.19 E-value=1.3e-10 Score=131.27 Aligned_cols=202 Identities=17% Similarity=0.190 Sum_probs=136.0
Q ss_pred hhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCC
Q 036794 411 LTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRG 490 (1152)
Q Consensus 411 l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g 490 (1152)
|+++-+-..++.++|.+..++.+...+.+...++ .||.||||+|||++++.||..+.....+.. -
T Consensus 12 l~~~a~~g~ld~~~gr~~ei~~~~~~L~r~~k~n-~llvG~~GvGKtaiv~~la~~i~~~~vp~~--------------l 76 (387)
T d1qvra2 12 LTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVKGDVPEG--------------L 76 (387)
T ss_dssp HHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCC-CEEEECTTSCHHHHHHHHHHHHHHTCSCTT--------------S
T ss_pred HHHHHHcCCCCCCcCcHHHHHHHHHHHhcCCCCC-CeEECCCCCCHHHHHHHHHHHHHhCCCCHH--------------H
Confidence 3344444568889999999999999998766655 478899999999999999998765543221 0
Q ss_pred CccceEEeCCCC------C-CCH-HHHHHHHHHHhhCCCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhhCCCC
Q 036794 491 KSRNIKEVGPVG------N-FDF-ESILDLLDNMVTSRPPSQYRIFVFDDCDTLS--------PDSWSAISKVVDRAPRR 554 (1152)
Q Consensus 491 ~~~dviEIdaas------~-~~v-deIreLle~a~~~P~~a~~kVVIIDEID~Ls--------~eaqnaLLklLEepp~~ 554 (1152)
....++.++... + ..+ ..+..++..+... ...-|+||||+|.+. .++.+.|..+|.. ..
T Consensus 77 ~~~~i~~ld~~~l~ag~~~~g~~e~r~~~i~~~~~~~---~~~~ilfide~h~l~~~g~~~g~~d~a~~Lkp~L~r--g~ 151 (387)
T d1qvra2 77 KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR--GE 151 (387)
T ss_dssp TTCEEEEECC-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC-------------------HHHHHT--TC
T ss_pred cCceEEEeeHhhhhcccCcchhHHHHHHHHHHHhccC---CCceEEEeccHHHHhcCCCCCCcccHHHHHHHHHhC--CC
Confidence 112245554321 1 123 2355666665432 224579999999983 2456788889987 67
Q ss_pred EEEEEEcCCCC----cchHHHHccceEEEecCCChhHHHHHHHHHHH----HcCCCCCHHHHHHHHHhc------CCCHH
Q 036794 555 VVFILVSSSLD----ALPHIIISRCQKFFFPKMKDADIIYTLQWIAS----KEGIEIDKDALKLIASRS------DGSLR 620 (1152)
Q Consensus 555 VifILaTN~~d----kL~~aL~SR~qvI~F~~p~~~EI~eiL~~iak----keGl~Id~dALelLAe~s------~GDLR 620 (1152)
+.+|++|+..+ .-+++|.+||+.|.+.+|+.++...+|+.+.. ..++.|+++|+..++..+ ..-+.
T Consensus 152 ~~~I~~tT~~ey~~~e~d~al~rrF~~v~v~ep~~~~~~~il~~~~~~~e~~h~v~~~~~ai~~~v~ls~ryi~~r~~Pd 231 (387)
T d1qvra2 152 LRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPD 231 (387)
T ss_dssp CCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHH
T ss_pred cceeeecCHHHHHHhcccHHHHHhcccccCCCCcHHHHHHHHHHHHHHHHhccCCcccHHHHHHHHHhcccccccccChh
Confidence 88888886211 12567999999999999999999998887664 458999999999888763 24677
Q ss_pred HHHHHHHHHHHh
Q 036794 621 DAEMTLEQLSLL 632 (1152)
Q Consensus 621 ~Ain~LEkLsLl 632 (1152)
.|+.+|+.++..
T Consensus 232 KAidlld~a~a~ 243 (387)
T d1qvra2 232 KAIDLIDEAAAR 243 (387)
T ss_dssp HHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH
Confidence 899999987544
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=99.04 E-value=1.9e-10 Score=118.52 Aligned_cols=163 Identities=18% Similarity=0.233 Sum_probs=115.4
Q ss_pred chhhhhCCCCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC
Q 036794 410 NLTQKYMPRTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR 489 (1152)
Q Consensus 410 ~l~eKyRP~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~ 489 (1152)
.+.++.+...++.++|++..++.+...+.+....+ +||.||||+|||++++.+|+.+.....+. .
T Consensus 11 dlt~~a~~g~ld~~igRd~Ei~~l~~iL~r~~k~n-~lLvG~pGVGKTalv~~LA~ri~~~~vp~--------------~ 75 (195)
T d1jbka_ 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPE--------------G 75 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCE-EEEECCTTSCHHHHHHHHHHHHHHTCSCG--------------G
T ss_pred HHHHHHHcCCCCCCcCcHHHHHHHHHHHhccCCCC-eEEEecCCcccHHHHHHHHHHHHhCCCCH--------------H
Confidence 44555555678899999999999999988766554 78999999999999999999886543221 1
Q ss_pred CCccceEEeCCC----CCCC---HH-HHHHHHHHHhhCCCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhhCCC
Q 036794 490 GKSRNIKEVGPV----GNFD---FE-SILDLLDNMVTSRPPSQYRIFVFDDCDTLSP--------DSWSAISKVVDRAPR 553 (1152)
Q Consensus 490 g~~~dviEIdaa----s~~~---vd-eIreLle~a~~~P~~a~~kVVIIDEID~Ls~--------eaqnaLLklLEepp~ 553 (1152)
-....+++++.. +... ++ .+..+++.+... ...-|+||||+|.+.. ++.+.|..+|+. .
T Consensus 76 L~~~~i~~ld~~~LiAg~~~rG~~E~rl~~il~e~~~~---~~~iILfIDeih~l~~~g~~~g~~d~~~~Lkp~L~r--g 150 (195)
T d1jbka_ 76 LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQ---EGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR--G 150 (195)
T ss_dssp GTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHS---TTTEEEEEETGGGGTT------CCCCHHHHHHHHHT--T
T ss_pred HcCceEEEeeHHHHhccCCccHHHHHHHHHHHHHHhcC---CCcEEEEcchHHHHhcCCCCCCcccHHHHHHHHHhC--C
Confidence 112336666632 2222 22 355566665322 2346899999999842 245788888986 6
Q ss_pred CEEEEEEcCCCC-----cchHHHHccceEEEecCCChhHHHHHH
Q 036794 554 RVVFILVSSSLD-----ALPHIIISRCQKFFFPKMKDADIIYTL 592 (1152)
Q Consensus 554 ~VifILaTN~~d-----kL~~aL~SR~qvI~F~~p~~~EI~eiL 592 (1152)
.+.+|++|+..+ .-.++|.+||+.|.+..|+.++...+|
T Consensus 151 ~l~~IgatT~eey~~~~e~d~aL~rrF~~I~V~Ep~~e~t~~IL 194 (195)
T d1jbka_ 151 ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred CceEEecCCHHHHHHHHHcCHHHHhcCCEeecCCCCHHHHHHHh
Confidence 788888887322 346789999999999999988876544
|
| >d1jr3d1 a.80.1.1 (D:212-338) delta subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: delta subunit species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.5e-10 Score=109.71 Aligned_cols=108 Identities=19% Similarity=0.226 Sum_probs=92.2
Q ss_pred hhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHH------------hCCC
Q 036794 651 EKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFR------------RQPL 718 (1152)
Q Consensus 651 e~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~------------r~~l 718 (1152)
+++|+|+|+++.+|..+|+.+++.|..+|++|+.|++.|.++|+.|+.++.... +.....++. .+++
T Consensus 1 f~~F~L~dai~~gd~~~a~~il~~l~~~g~~~~~il~~l~~~~~~l~~i~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~ 79 (127)
T d1jr3d1 1 FTPFHWVDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSA-HTPLRALFDKHRVWQNRRGMMGEAL 79 (127)
T ss_dssp CCHHHHHHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSS-SSCHHHHHHHHTCCSSHHHHHHHHH
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHhhc-cCCHHHHHHHcCCCHHHHHHHHHHH
Confidence 368999999999999999999999999999999999999999999999875432 333332222 2345
Q ss_pred CcccHHHHHHHHHHHHHHHHHhcc--CCCHHHHHHHHHHHcCC
Q 036794 719 SKEEMEKLRQALKTLSEAEKQLRM--SNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 719 s~~s~~kL~qaL~~L~eaD~qLK~--s~dprl~LE~lLLkLa~ 759 (1152)
++|+..+|.+++..|.++|..+|+ +.++++.||.++++||.
T Consensus 80 ~~~s~~~l~~~l~~l~~~D~~~K~~~~~~~~~~le~l~l~lc~ 122 (127)
T d1jr3d1 80 NRLSQTQLRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCH 122 (127)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTS
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhC
Confidence 699999999999999999999997 45899999999999995
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=98.86 E-value=2.1e-09 Score=118.44 Aligned_cols=126 Identities=16% Similarity=0.116 Sum_probs=77.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCCCCC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRPPSQ 524 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~~a~ 524 (1152)
.+|||||||||||.+|+++|.+++...... .+..+.. + ..........++++++.+...
T Consensus 125 ~~l~~G~pG~GKT~la~ala~~~~~~~~~~-----------~~~~~~~---~--~~~~G~~e~~~~~~f~~a~~~----- 183 (321)
T d1w44a_ 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYA-----------TVRFGEP---L--SGYNTDFNVFVDDIARAMLQH----- 183 (321)
T ss_dssp EEEEECSSSSCHHHHHHHHHHHHHTTSCCE-----------EEEBSCS---S--TTCBCCHHHHHHHHHHHHHHC-----
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCCCeE-----------EEEhhHh---h--hcccchHHHHHHHHHHHHhhc-----
Confidence 466799999999999999999987542111 1111110 0 111112346789999988642
Q ss_pred ceEEEEeCCCCCCHH------------HHHHHHHHHhh--CCCCEEEEEEcCCCCcchHHHH------ccce-EEEecCC
Q 036794 525 YRIFVFDDCDTLSPD------------SWSAISKVVDR--APRRVVFILVSSSLDALPHIII------SRCQ-KFFFPKM 583 (1152)
Q Consensus 525 ~kVVIIDEID~Ls~e------------aqnaLLklLEe--pp~~VifILaTN~~dkL~~aL~------SR~q-vI~F~~p 583 (1152)
.||||||+|.+... ..+.||.-|+. ...+++||++||. ..++++|. .|+. .+.+..|
T Consensus 184 -~ilf~DEid~~~~~r~~~~~~~~~~r~v~~lL~e~dg~~~~~~v~viaatN~-~~~~~~i~~~~~r~~Rf~~~v~v~~p 261 (321)
T d1w44a_ 184 -RVIVIDSLKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNP-TSNDDKIVELVKEASRSNSTSLVIST 261 (321)
T ss_dssp -SEEEEECCTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCC-CCCCHHHHHHHHHHHHHSCSEEEEEC
T ss_pred -cEEEeehhhhhccccccCCCCCcchhhhhhhhhhccccccCCCeEEEEeCCC-cccccchhhhhhccCcccceeecCCC
Confidence 59999999998432 34566666653 3357888888884 33444332 2333 4666777
Q ss_pred ChhHHHHHHH
Q 036794 584 KDADIIYTLQ 593 (1152)
Q Consensus 584 ~~~EI~eiL~ 593 (1152)
+.++...+|.
T Consensus 262 d~~~r~~il~ 271 (321)
T d1w44a_ 262 DVDGEWQVLT 271 (321)
T ss_dssp SSTTEEEEEE
T ss_pred ChHHHHHHHH
Confidence 7665544443
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=98.82 E-value=2.6e-09 Score=119.60 Aligned_cols=173 Identities=14% Similarity=0.066 Sum_probs=93.0
Q ss_pred ccCcHHHH-HHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC
Q 036794 423 LVGQNLVA-QALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV 501 (1152)
Q Consensus 423 LVGQe~v~-q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa 501 (1152)
+.|.+..+ ..|+..+..-....++|||||||||||++|+++|+.+++.....+ ..
T Consensus 133 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~~~~i~in------------------------~s 188 (362)
T d1svma_ 133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVN------------------------LP 188 (362)
T ss_dssp STTHHHHHHHHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCS------------------------SC
T ss_pred ccchHHHHHHHHHHHHhCCCCcCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEE------------------------Cc
Confidence 44555444 334444443344468999999999999999999999987643322 11
Q ss_pred CCCCHHHHHHHH-------HHHhh--CCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC--------CC------CEEEE
Q 036794 502 GNFDFESILDLL-------DNMVT--SRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA--------PR------RVVFI 558 (1152)
Q Consensus 502 s~~~vdeIreLl-------e~a~~--~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep--------p~------~VifI 558 (1152)
...+...++... +.+.. ........++++||+|.| ...++.. .. ...+|
T Consensus 189 ~~rs~~~l~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~DeiD~l--------~~~~dg~~~~~~~~~~~~~~~~~~~p~i 260 (362)
T d1svma_ 189 LDRLNFELGVAIDQFLVVFEDVKGTGGESRDLPSGQGINNLDNL--------RDYLDGSVKVNLEKKHLNKRTQIFPPGI 260 (362)
T ss_dssp TTTHHHHHGGGTTCSCEEETTCCCSTTTTTTCCCCSHHHHHHTT--------HHHHHCSSCEEECCSSSCCEEECCCCEE
T ss_pred chhhHHHHHhHHHHHHHHHHHHHHhhhhccCCCCeEEEehHhhc--------ccccCCcchhhhhhhhhchhhhccCCce
Confidence 100000000000 00000 000112234555555543 3333321 01 11378
Q ss_pred EEcCCCCcchHHHHccce--EEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHHHH-HhcCCCHHHHHHHHHH
Q 036794 559 LVSSSLDALPHIIISRCQ--KFFFPKMKDADIIYTLQWIASKEGIEIDKDALKLIA-SRSDGSLRDAEMTLEQ 628 (1152)
Q Consensus 559 LaTN~~dkL~~aL~SR~q--vI~F~~p~~~EI~eiL~~iakkeGl~Id~dALelLA-e~s~GDLR~Ain~LEk 628 (1152)
++||+.+ .+....-|+. ++.+.++.......++..+++.+.+.++.+++..+. ..+++|++.+++.+..
T Consensus 261 ~ttN~~~-~~~~r~~Rf~~~i~~~~~~~~~~~~~~l~~i~~~~~l~~~~~~L~~li~~~s~~D~~~~i~~~~~ 332 (362)
T d1svma_ 261 VTMNEYS-VPKTLQARFVKQIDFRPKDYLKHCLERSEFLLEKRIIQSGIALLLMLIWYRPVAEFAQSIQSRIV 332 (362)
T ss_dssp EEECSCC-CCHHHHTTEEEEEECCCCHHHHHHHHTCTHHHHTTCTTCHHHHHHHHHHHSCGGGSCGGGHHHHH
T ss_pred eeccccc-ccccccccCceEEeecCCCcHHHHHHHHHHHhcccCCCCCHHHHHHHccCCCHHHHHHHHHHHHH
Confidence 8888765 2222333544 344444445556677888889999998888876654 4466688877766543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=98.81 E-value=3.7e-08 Score=101.64 Aligned_cols=195 Identities=15% Similarity=0.124 Sum_probs=113.9
Q ss_pred CcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccC---------
Q 036794 419 TFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDR--------- 489 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~--------- 489 (1152)
.-++++|.+..+++|.+. ....++|+||+|+|||++++.+++.+++...... |..+.....
T Consensus 10 ~~~~f~GR~~el~~l~~~-----~~~~i~i~G~~G~GKTsLl~~~~~~~~~~~~~i~-----~~~~~~~~~~~~~~~~~~ 79 (283)
T d2fnaa2 10 NRKDFFDREKEIEKLKGL-----RAPITLVLGLRRTGKSSIIKIGINELNLPYIYLD-----LRKFEERNYISYKDFLLE 79 (283)
T ss_dssp SGGGSCCCHHHHHHHHHT-----CSSEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE-----GGGGTTCSCCCHHHHHHH
T ss_pred ChhhCCChHHHHHHHHhc-----cCCEEEEEcCCCCcHHHHHHHHHHHCCCCeEEEE-----eccccccccccHHHHHHH
Confidence 457899999998888753 3457899999999999999999988764321100 000000000
Q ss_pred -------------------CCccceE------EeCCCCCCCHHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHH----
Q 036794 490 -------------------GKSRNIK------EVGPVGNFDFESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDS---- 540 (1152)
Q Consensus 490 -------------------g~~~dvi------EIdaas~~~vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~ea---- 540 (1152)
....... .... .......+.++++.+... ..+..++++||++.+....
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~l~~~--~~~~~~i~id~~~~~~~~~~~~~ 156 (283)
T d2fnaa2 80 LQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNW-NRKDRLSFANLLESFEQA--SKDNVIIVLDEAQELVKLRGVNL 156 (283)
T ss_dssp HHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC------CCCHHHHHHHHHHT--CSSCEEEEEETGGGGGGCTTCCC
T ss_pred HHHHhhhhhhhhHHHHHHHHhhhccccccccccccc-chhhhhHHHHHHHHHHhh--cccccccccchhhhhcccchHHH
Confidence 0000000 0000 011112234444443322 2445789999998874432
Q ss_pred HHHHHHHHhhCCCCEEEEEEcCCCCcchH---------H-HHccceEEEecCCChhHHHHHHHHHHHHcCCCCCHHHHHH
Q 036794 541 WSAISKVVDRAPRRVVFILVSSSLDALPH---------I-IISRCQKFFFPKMKDADIIYTLQWIASKEGIEIDKDALKL 610 (1152)
Q Consensus 541 qnaLLklLEepp~~VifILaTN~~dkL~~---------a-L~SR~qvI~F~~p~~~EI~eiL~~iakkeGl~Id~dALel 610 (1152)
...|...+.. ...+.+|+++.....+.. . ...+...+.+.+++.+++.+++...+...+++.+ .++.
T Consensus 157 ~~~l~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~L~~l~~~e~~~~l~~~~~~~~~~~~--~~~~ 233 (283)
T d2fnaa2 157 LPALAYAYDN-LKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFK--DYEV 233 (283)
T ss_dssp HHHHHHHHHH-CTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCC--CHHH
T ss_pred HHHHHHHHHh-hhhhhhhhccccchHHHHHHHhhhhcchhcccceeEEeeCCCCHHHHHHHHHhhhhhcCCCHH--HHHH
Confidence 3344444444 356667776554321111 1 1223457889999999999999999888776554 4778
Q ss_pred HHHhcCCCHHHHHHHHHHH
Q 036794 611 IASRSDGSLRDAEMTLEQL 629 (1152)
Q Consensus 611 LAe~s~GDLR~Ain~LEkL 629 (1152)
+.+.++|.+..+.-....+
T Consensus 234 i~~~~~G~P~~L~~~~~~~ 252 (283)
T d2fnaa2 234 VYEKIGGIPGWLTYFGFIY 252 (283)
T ss_dssp HHHHHCSCHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHH
Confidence 9999999997654443333
|
| >d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: gamma subunit species: Escherichia coli [TaxId: 562]
Probab=98.74 E-value=1.6e-08 Score=96.06 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=91.9
Q ss_pred cchhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcch----hHHHHHHhCCCCcccH
Q 036794 648 ISDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDR----HRRKFFRRQPLSKEEM 723 (1152)
Q Consensus 648 v~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~----~~~~~~~r~~ls~~s~ 723 (1152)
+..+.+|+|+++++.+|...+++.++++.+.|.||..++..|+.++|+++..+....... .....+.. .+.+++.
T Consensus 2 vD~~~~~~L~~~I~~~d~~~~L~~l~~i~~~G~d~~~~l~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~-~a~~~~~ 80 (126)
T d1jr3a1 2 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRE-LARTIPP 80 (126)
T ss_dssp CCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHH-HHHHSCH
T ss_pred CCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHHHHH-HHHcCCH
Confidence 457889999999999999999999999999999999999999999999988764432211 01111111 2347999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 724 EKLRQALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 724 ~kL~qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
+.|.++++.|.++..++|++.+|+++||++++++.
T Consensus 81 ~~L~~~~~il~~~~~~ik~s~~~r~~~Em~llrll 115 (126)
T d1jr3a1 81 TDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRAL 115 (126)
T ss_dssp HHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999965
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=98.60 E-value=2.9e-07 Score=105.20 Aligned_cols=123 Identities=20% Similarity=0.300 Sum_probs=83.1
Q ss_pred eEEEEeCCCCCC------------HHHHHHHHHHHhh----------CCCCEEEEEEcCC----CCcchHHHHccce-EE
Q 036794 526 RIFVFDDCDTLS------------PDSWSAISKVVDR----------APRRVVFILVSSS----LDALPHIIISRCQ-KF 578 (1152)
Q Consensus 526 kVVIIDEID~Ls------------~eaqnaLLklLEe----------pp~~VifILaTN~----~dkL~~aL~SR~q-vI 578 (1152)
.++++||++... ...+..|+..++. ...+..||..+.. +..+.|.|.-|+. ++
T Consensus 251 ~~~~~dei~k~~~~~~~~g~d~~~eg~~~~ll~~~e~~~v~~~~~~~~~~~~l~i~~~~~~~~~~~gliPEliGRlPi~v 330 (443)
T d1g41a_ 251 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 330 (443)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CccccchhhhhhhcccCCCCCcccchhhhhhhhhccccccccccccccccchhhccccchhhcccccchhhhccceEEEE
Confidence 588999998752 2245677777765 2234456555432 2347777999988 48
Q ss_pred EecCCChhHHHHHHHH-----------HHHHcCCC--CCHHHHHHHHHhc-------CC-CHHHHHHHHHHHHH---h-C
Q 036794 579 FFPKMKDADIIYTLQW-----------IASKEGIE--IDKDALKLIASRS-------DG-SLRDAEMTLEQLSL---L-G 633 (1152)
Q Consensus 579 ~F~~p~~~EI~eiL~~-----------iakkeGl~--Id~dALelLAe~s-------~G-DLR~Ain~LEkLsL---l-g 633 (1152)
.|.+++.+++..+|.. .+..+|+. ++++|++.||+.+ .+ ..|.+..++|++.. | .
T Consensus 331 ~L~~L~~~dL~rILtEPknsLikQy~~lf~~~gv~L~ft~~al~~iA~~A~~~n~~~~~~GAR~Lr~i~E~~l~~~~f~~ 410 (443)
T d1g41a_ 331 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 410 (443)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred EccCccHHHHHHHHHhhhhhHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhhhhcccCCchHHHHHHHHHHHHHhccC
Confidence 8999999999887742 33346765 5899999998884 22 56888888888632 2 1
Q ss_pred -----C--CCCHHHHHHHHhcc
Q 036794 634 -----Q--RISVPLVQELVGLI 648 (1152)
Q Consensus 634 -----~--~IT~EdV~elVg~v 648 (1152)
. .||.+.|.+-+...
T Consensus 411 p~~~~~~v~Id~~~v~~~l~~~ 432 (443)
T d1g41a_ 411 SDMNGQTVNIDAAYVADALGEV 432 (443)
T ss_dssp GGCTTCEEEECHHHHHHHHTTT
T ss_pred CCCCCCEEEECHHHHHhhhhch
Confidence 1 27888887777543
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=98.04 E-value=3.5e-05 Score=81.99 Aligned_cols=171 Identities=12% Similarity=0.095 Sum_probs=99.3
Q ss_pred cccCcHHHHHHHHHHHHh--CCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeC
Q 036794 422 DLVGQNLVAQALSNAVMR--RKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVG 499 (1152)
Q Consensus 422 dLVGQe~v~q~Lk~aL~~--gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEId 499 (1152)
+++|.+.-++.+..++.. ......+.|+|..|+|||++|+.+.+......... ..| ++.+.
T Consensus 21 ~~~gR~~~~~~i~~~L~~~~~~~~~~v~I~GmgGiGKTtLA~~v~~~~~~~~~~~----f~~-------------~~Wv~ 83 (277)
T d2a5yb3 21 TCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGIN----YDS-------------IVWLK 83 (277)
T ss_dssp CSCCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTT----BSE-------------EEEEE
T ss_pred ceeCcHHHHHHHHHHHHhccCCCceEEEEECCCCCCHHHHHHHHHHhhhhhhhhc----Cce-------------EEEEE
Confidence 467999999889888865 23345788999999999999999987632211000 000 11111
Q ss_pred CCCCCCHH------------------------------HHHH-HHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHH
Q 036794 500 PVGNFDFE------------------------------SILD-LLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVV 548 (1152)
Q Consensus 500 aas~~~vd------------------------------eIre-Lle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklL 548 (1152)
........ ..+. ++... ...++.++|||++... ..+ +.+
T Consensus 84 vs~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----L~~kr~LlVLDDv~~~--~~~----~~~ 153 (277)
T d2a5yb3 84 DSGTAPKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL----IDRPNTLFVFDDVVQE--ETI----RWA 153 (277)
T ss_dssp CCCCSTTHHHHHHHHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH----TTSTTEEEEEEEECCH--HHH----HHH
T ss_pred ecCCCCHHHHHHHHHHHHHHhcchhhcCCccchhhhhHHHHHHHHHHH----hccCCeeEecchhhHH--hhh----hhh
Confidence 01111111 1111 11111 1234578999998752 222 233
Q ss_pred hhCCCCEEEEEEcCCCCcchHHHHccceEEEecCCChhHHHHHHHHHHHHcCC-CCCHHHHHHHHHhcCCCHHHH
Q 036794 549 DRAPRRVVFILVSSSLDALPHIIISRCQKFFFPKMKDADIIYTLQWIASKEGI-EIDKDALKLIASRSDGSLRDA 622 (1152)
Q Consensus 549 Eepp~~VifILaTN~~dkL~~aL~SR~qvI~F~~p~~~EI~eiL~~iakkeGl-~Id~dALelLAe~s~GDLR~A 622 (1152)
.. ....+|++|.+.. +...+...+..+.+.+++.++..+.+...+..... .-.++..+.|++.++|.+-.+
T Consensus 154 ~~--~~srilvTTR~~~-v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~~~~~~~~~~~~~~~~~iv~~c~GlPLAl 225 (277)
T d2a5yb3 154 QE--LRLRCLVTTRDVE-ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATL 225 (277)
T ss_dssp HH--TTCEEEEEESBGG-GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHH
T ss_pred cc--cCceEEEEeehHH-HHHhcCCCCceEECCCCCHHHHHHHHHHHhCCccCchhhHHHHHHHHHHhCCCHHHH
Confidence 33 2456777776554 33345556678999999999988888654322211 113556778899999987554
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.88 E-value=1.8e-05 Score=76.82 Aligned_cols=63 Identities=6% Similarity=0.075 Sum_probs=37.9
Q ss_pred CCceEEEEeCCCCCC---HHHHHHHHHHHhhCCCCEEEEEEcCCC--CcchHHHHcc--ceEEEecCCChhH
Q 036794 523 SQYRIFVFDDCDTLS---PDSWSAISKVVDRAPRRVVFILVSSSL--DALPHIIISR--CQKFFFPKMKDAD 587 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls---~eaqnaLLklLEepp~~VifILaTN~~--dkL~~aL~SR--~qvI~F~~p~~~E 587 (1152)
....++++||++... ......|.++++++ ...+|+++... ..+...+..+ +..+.....+.+.
T Consensus 98 ~~~~vlllDE~~~~~~~~~~~~~~l~~~l~~~--~~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~~nrd~ 167 (178)
T d1ye8a1 98 DRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP--NVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDV 167 (178)
T ss_dssp CTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT--TSEEEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTT
T ss_pred cCCCceeecCCCccchhhHHHHHHHHHHhccC--CCEEEEEEccHHHHHhhceEEEEeCCEEEEECCccHHH
Confidence 456899999997763 44567888888764 34455555543 3344445544 3356555544333
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=97.77 E-value=5.9e-06 Score=85.44 Aligned_cols=52 Identities=19% Similarity=0.224 Sum_probs=38.6
Q ss_pred CcCcccCcHHHHHHHHHHHHh---CCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 419 TFRDLVGQNLVAQALSNAVMR---RKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 419 sFddLVGQe~v~q~Lk~aL~~---gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.|.+.-+++.+.+.|...... ...|.+|||+||||||||++|++||.++++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~ilL~GpPGtGKT~la~~la~~~~~~ 59 (273)
T d1gvnb_ 5 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGN 59 (273)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTC
T ss_pred ccChHHHHHHHHHHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHhhcc
Confidence 355555666666555554333 4556789999999999999999999998765
|
| >d1jqlb_ c.37.1.20 (B:) delta subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=97.75 E-value=0.00011 Score=70.30 Aligned_cols=125 Identities=9% Similarity=0.020 Sum_probs=90.6
Q ss_pred HHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHH
Q 036794 432 ALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILD 511 (1152)
Q Consensus 432 ~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIre 511 (1152)
.|...+..+ .++.|||||+.-.-+..+...|-+.+...... +..........+ +.+
T Consensus 8 ~L~~~l~k~-l~~vyll~G~E~~L~~~~~~~i~~~~~~~~~~--------------------~~~~~~~~~~~~---~~~ 63 (140)
T d1jqlb_ 8 QLRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE--------------------EHHTFSIDPNTD---WNA 63 (140)
T ss_dssp GHHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTTCC--------------------EEECCCCSTTCC---HHH
T ss_pred HHHHHHhcC-CCcEEEEEcChHHHHHHHHHHHHHHHHhCCcc--------------------eeeeecccccCC---HHH
Confidence 466677765 88999999999999999888887776543211 011111112233 455
Q ss_pred HHHHHhhCCCCCCceEEEEeCCCCCC-HHHHHHHHHHHhhCCCCEEEEEEcCCCC------cchHHHHccceEEEe
Q 036794 512 LLDNMVTSRPPSQYRIFVFDDCDTLS-PDSWSAISKVVDRAPRRVVFILVSSSLD------ALPHIIISRCQKFFF 580 (1152)
Q Consensus 512 Lle~a~~~P~~a~~kVVIIDEID~Ls-~eaqnaLLklLEepp~~VifILaTN~~d------kL~~aL~SR~qvI~F 580 (1152)
+++.+...|+++.+++|+|++..... ....+.|.++++.++.++++|+.++..+ ++..+|...+.+|++
T Consensus 64 l~~~~~t~slF~~krli~i~~~~~~~~k~~~~~L~~~~~~~~~~~~lii~~~~~~k~~~~~k~~K~l~k~g~vI~C 139 (140)
T d1jqlb_ 64 IFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTC 139 (140)
T ss_dssp HHHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEEC
T ss_pred HHHHHcCCCcccCcEEEEEEcCCCCCcHHHHHHHHHHHhCCCCCEEEEEEcCCCCchhhhhHHHHHHHhCCeEEeC
Confidence 77777788999999999999987654 5667889999999999999999887544 356677777777765
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=97.57 E-value=9.7e-05 Score=75.64 Aligned_cols=120 Identities=20% Similarity=0.244 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 428 LVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 428 ~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
..+..|+.+++.....++++|+||++||||++|.+|.+.+....... . +..+++...
T Consensus 38 ~Fl~~l~~~l~~~PKkn~i~~~GP~~TGKS~f~~sl~~~l~G~vis~-------------~----------N~~s~F~Lq 94 (205)
T d1tuea_ 38 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISF-------------V----------NSTSHFWLE 94 (205)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCC-------------C----------CSSSCGGGG
T ss_pred HHHHHHHHHHcCCCCceEEEEECCCCccHHHHHHHHHHHhCCEEEec-------------c----------CCCCCcccc
Confidence 45577777776555557999999999999999999999986432111 0 000111111
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHH-HHHHHhhCC-------------CCEEEEEEcCCC---CcchHH
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSA-ISKVVDRAP-------------RRVVFILVSSSL---DALPHI 570 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqna-LLklLEepp-------------~~VifILaTN~~---dkL~~a 570 (1152)
+. .+.+++++||+......-... |..+++..+ ....+|++||.. +.-...
T Consensus 95 ------------~l-~~~kv~l~dD~t~~~~~~~d~~lK~ll~G~~vsvd~KhK~~vqi~~pPliITsN~~~~~~d~~~~ 161 (205)
T d1tuea_ 95 ------------PL-TDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPY 161 (205)
T ss_dssp ------------GG-TTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHH
T ss_pred ------------cc-cCCeEEEEeccccchHHHHHHHHHhccCCCeeeeecccCCcccccCCCEEEEcCCCCCccccchh
Confidence 11 345899999976544433344 344555411 112366777643 234567
Q ss_pred HHccceEEEecCC
Q 036794 571 IISRCQKFFFPKM 583 (1152)
Q Consensus 571 L~SR~qvI~F~~p 583 (1152)
|.+|..+|.|+.+
T Consensus 162 L~sRi~~f~F~~~ 174 (205)
T d1tuea_ 162 LESRITVFEFPNA 174 (205)
T ss_dssp HHTSCEEEECCSC
T ss_pred hhheEEEEECCCc
Confidence 9999999999843
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=97.18 E-value=0.0014 Score=69.50 Aligned_cols=117 Identities=15% Similarity=0.224 Sum_probs=73.5
Q ss_pred HHHHHHHHHHhC-CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHH
Q 036794 429 VAQALSNAVMRR-KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFE 507 (1152)
Q Consensus 429 v~q~Lk~aL~~g-ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vd 507 (1152)
+...|..++... ....+++|+||++||||+++.+|.+.++... |... ....+.+.
T Consensus 89 f~~~l~~~L~~~~~k~n~~~l~G~~~tGKS~f~~~i~~~lg~~~------------~~~~------------~~~~f~l~ 144 (267)
T d1u0ja_ 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFYG------------CVNW------------TNENFPFN 144 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCEE------------ECCT------------TCSSCTTG
T ss_pred HHHHHHHHHcCCCCccEEEEEEcCCCCCHHHHHHHHHHHhcchh------------hccc------------cCCCcccc
Confidence 345555566433 4446899999999999999999999875321 1100 00112111
Q ss_pred HHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhh--------------CCCCEEEEEEcCCCCc-------
Q 036794 508 SILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDR--------------APRRVVFILVSSSLDA------- 566 (1152)
Q Consensus 508 eIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEe--------------pp~~VifILaTN~~dk------- 566 (1152)
+. .+.+++++||+..- ....+.|..++.. .....++|+++|++..
T Consensus 145 ------------~l-~~k~~~~~~e~~~~-~~~~~~~K~l~gGd~i~v~~K~k~~~~~~~~p~li~s~n~i~~~~~~~~~ 210 (267)
T d1u0ja_ 145 ------------DC-VDKMVIWWEEGKMT-AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST 210 (267)
T ss_dssp ------------GG-SSCSEEEECSCCEE-TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE
T ss_pred ------------cc-CCCEEEEEeCCCcc-ccHHHHHHHhcCCCceEeecccCCCcEeeCCeEEEEeCCCcccccCCCcc
Confidence 11 34589999998653 3344556555543 2245677888877643
Q ss_pred ---chHHHHccceEEEecCC
Q 036794 567 ---LPHIIISRCQKFFFPKM 583 (1152)
Q Consensus 567 ---L~~aL~SR~qvI~F~~p 583 (1152)
-...|.+|+..|.|...
T Consensus 211 ~~~~~~~l~~R~~~~~F~~~ 230 (267)
T d1u0ja_ 211 TFEHQQPLQDRMFKFELTRR 230 (267)
T ss_dssp ECTTHHHHHTTEEEEECCSC
T ss_pred ccccchHhhhhEEEEECCCc
Confidence 24679999999998764
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.14 E-value=0.00087 Score=63.71 Aligned_cols=26 Identities=27% Similarity=0.402 Sum_probs=23.3
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+||+|||||++++.++..+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~ 28 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSS 28 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 48999999999999999999998544
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=97.07 E-value=0.00081 Score=74.15 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=29.1
Q ss_pred CceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCCcchH
Q 036794 524 QYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLDALPH 569 (1152)
Q Consensus 524 ~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~dkL~~ 569 (1152)
...+|||||+.++.......++..+ +....+|++. +++.|++
T Consensus 261 ~~d~lIIDEaSmv~~~l~~~ll~~~---~~~~~lILvG-D~~QLpp 302 (359)
T d1w36d1 261 HLDVLVVDEASMIDLPMMSRLIDAL---PDHARVIFLG-DRDQLAS 302 (359)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTC---CTTCEEEEEE-CTTSGGG
T ss_pred ccceeeehhhhccCHHHHHHHHHHh---cCCCEEEEEC-ChhhccC
Confidence 4579999999999877665555544 5567777765 4444554
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.00 E-value=0.0012 Score=67.88 Aligned_cols=143 Identities=13% Similarity=0.108 Sum_probs=72.3
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhh--
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVT-- 518 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~-- 518 (1152)
+.+++++|.||+|+||||++--||..+.... ....++..|.......++++...+.+..
T Consensus 10 k~p~vi~lvGptGvGKTTTiAKLA~~~~~~g-------------------~kV~lit~Dt~R~ga~eQL~~~a~~l~v~~ 70 (211)
T d1j8yf2 10 KIPYVIMLVGVQGTGKATTAGKLAYFYKKKG-------------------FKVGLVGADVYRPAALEQLQQLGQQIGVPV 70 (211)
T ss_dssp SSSEEEEEECSCCC----HHHHHHHHHHHTT-------------------CCEEEEECCCSSHHHHHHHHHHHHHHTCCE
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHCC-------------------CceEEEEeeccccchhHHHHHhccccCcce
Confidence 5677899999999999999888887664321 1111222222111112222222111110
Q ss_pred ------------------CCCCCCceEEEEeCCCCCCHH----HHHHHHHHHhh-CCCCEEEEEEcCCCCcchHHHHcc-
Q 036794 519 ------------------SRPPSQYRIFVFDDCDTLSPD----SWSAISKVVDR-APRRVVFILVSSSLDALPHIIISR- 574 (1152)
Q Consensus 519 ------------------~P~~a~~kVVIIDEID~Ls~e----aqnaLLklLEe-pp~~VifILaTN~~dkL~~aL~SR- 574 (1152)
......+.+||||=++..+.+ ....|.++.+. .+..+.+++.++.-......+..+
T Consensus 71 ~~~~~~~~~~~~~~~a~~~~~~~~~d~IlIDTaGr~~~~~~~~~~~el~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~~~ 150 (211)
T d1j8yf2 71 YGEPGEKDVVGIAKRGVEKFLSEKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIGQKAYDLASKFN 150 (211)
T ss_dssp ECCTTCCCHHHHHHHHHHHHHHTTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGGGGHHHHHHHHH
T ss_pred eecccchhhhHHHHHHHHHhhccCCceEEEecCCcCccchhhHHHHHHHHHHhhcCCceEEEEEecccCcchHHHHhhhh
Confidence 000134689999998875432 12445555554 345677777765433222323222
Q ss_pred ----ceEEEecCCChhHHHHHHHHHHHHcCCC
Q 036794 575 ----CQKFFFPKMKDADIIYTLQWIASKEGIE 602 (1152)
Q Consensus 575 ----~qvI~F~~p~~~EI~eiL~~iakkeGl~ 602 (1152)
...+-|.++++....--+-..+...++.
T Consensus 151 ~~~~~~~lI~TKlDet~~~G~~l~~~~~~~lP 182 (211)
T d1j8yf2 151 QASKIGTIIITKMDGTAKGGGALSAVAATGAT 182 (211)
T ss_dssp HHCTTEEEEEECTTSCSCHHHHHHHHHTTTCC
T ss_pred cccCcceEEEecccCCCcccHHHHHHHHHCcC
Confidence 2346688888776655555555554444
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=96.83 E-value=0.00061 Score=62.47 Aligned_cols=47 Identities=19% Similarity=0.335 Sum_probs=29.2
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHHHHH--HHHHHHhhCCCCEEEEEEcC
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPDSWS--AISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~eaqn--aLLklLEepp~~VifILaTN 562 (1152)
.........+.++||+||+|.+.+.... .++..+...+ +..+|+.|.
T Consensus 89 ~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~~~~~~~~~~~-~~~~l~lTA 137 (140)
T d1yksa1 89 RMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARAN-ESATILMTA 137 (140)
T ss_dssp HHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTT-SCEEEEECS
T ss_pred HHhccccccceeEEEEccccccChhhHHHHHHHHHHhhCC-CCCEEEEEc
Confidence 3444555678899999999999776433 3444444433 445555543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00045 Score=67.30 Aligned_cols=41 Identities=22% Similarity=0.366 Sum_probs=32.2
Q ss_pred HHHHHHHHhCCCCc---EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 431 QALSNAVMRRKVGL---LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 431 q~Lk~aL~~gri~~---~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
+.+.+++..++.++ +++|+|+||+||||+|+.||+.+++..
T Consensus 4 ~~~~~~~~~~~~~~~g~vI~L~G~pGSGKTTiAk~La~~l~~~~ 47 (195)
T d1x6va3 4 RNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHG 47 (195)
T ss_dssp HHHHHHHHSSSCSCCCEEEEEESSCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhhhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 34555665555554 788999999999999999999998753
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=96.71 E-value=0.00033 Score=65.34 Aligned_cols=26 Identities=35% Similarity=0.599 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+||+|+||||+|+.||+.+++.
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L~~~ 29 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQLNME 29 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 37889999999999999999999865
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=96.69 E-value=0.00047 Score=65.84 Aligned_cols=31 Identities=29% Similarity=0.469 Sum_probs=27.2
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++.++.|+|+||||+||||+|+.|++.+++.
T Consensus 3 ~~~~~iivl~G~~GsGKsT~a~~La~~l~~~ 33 (171)
T d1knqa_ 3 NHDHHIYVLMGVSGSGKSAVASEVAHQLHAA 33 (171)
T ss_dssp CTTSEEEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3456789999999999999999999999765
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=96.67 E-value=0.00044 Score=65.90 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
...++|.||+||||||+|++||+.++...
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~~~~ 35 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFNTTS 35 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 45689999999999999999999987653
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.67 E-value=0.0011 Score=65.33 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=49.7
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCCC
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSRP 521 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P~ 521 (1152)
.+..+|++|+||+||||+|+.++...++. .+..|. ......+...+....
T Consensus 13 ~p~liil~G~pGsGKST~a~~l~~~~~~~------------------------~i~~D~--~~~~~~~~~~~~~~l---- 62 (172)
T d1yj5a2 13 NPEVVVAVGFPGAGKSTFIQEHLVSAGYV------------------------HVNRDT--LGSWQRCVSSCQAAL---- 62 (172)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHTGGGTCE------------------------EEEHHH--HCSHHHHHHHHHHHH----
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCCE------------------------EEchHH--HHHHHHHHHHHHHHH----
Confidence 34589999999999999999886554322 111110 012233333333322
Q ss_pred CCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEE
Q 036794 522 PSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILV 560 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILa 560 (1152)
..+..||||... +.......++.+..+....+.+|..
T Consensus 63 -~~g~~vIiD~t~-~~~~~R~~~~~~a~~~~~~~~~v~l 99 (172)
T d1yj5a2 63 -RQGKRVVIDNTN-PDVPSRARYIQCAKDAGVPCRCFNF 99 (172)
T ss_dssp -HTTCCEEEESCC-CSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred -HCCCCceeeCcC-CCHHHHHHHHHHHHhcCCCEEEEEe
Confidence 223567888665 4555556677776665555555544
|
| >d1sxjd1 a.80.1.1 (D:263-353) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.66 E-value=0.0046 Score=54.76 Aligned_cols=88 Identities=15% Similarity=0.177 Sum_probs=75.7
Q ss_pred chhhHHHHHHHHHcCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHH
Q 036794 649 SDEKLVDLLDLALSADTVNTVKNLRVIMETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQ 728 (1152)
Q Consensus 649 ~ee~ifdLldAils~d~~~ALk~L~~LL~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~q 728 (1152)
+++.+.++++++.++++..+.+.++.++.+|.+...|+.+|.+.+.. ...++-....+
T Consensus 2 P~~~i~~il~~~~~~~f~~a~~~i~~l~~~Gys~~dIl~~l~~~vv~----------------------~~~i~~~~k~~ 59 (91)
T d1sxjd1 2 PHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYIT----------------------NDNFDTNFKNQ 59 (91)
T ss_dssp CSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHH----------------------CSSSCHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh----------------------cCCCCHHHHHH
Confidence 45567899999999999999999999999999999999998876431 12356667788
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 729 ALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 729 aL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
++..++++|..|-.|.++.+.|..++.+++
T Consensus 60 i~~~la~~d~rL~~G~~e~lQL~~lla~i~ 89 (91)
T d1sxjd1 60 ISWLLFTTDSRLNNGTNEHIQLLNLLVKIS 89 (91)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 899999999999999999999999998876
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.64 E-value=0.0023 Score=59.92 Aligned_cols=24 Identities=29% Similarity=0.387 Sum_probs=20.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|+||||+||||+|+.|++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 368899999999999999887653
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=96.64 E-value=0.002 Score=60.09 Aligned_cols=39 Identities=23% Similarity=0.496 Sum_probs=24.5
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhh--CCCCEEEEEEc
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDR--APRRVVFILVS 561 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEe--pp~~VifILaT 561 (1152)
.++.+|||||+|.+.......+..+++. ......+|+.|
T Consensus 93 ~~~~~vIiDE~H~~~~~~~~~~~~~l~~~~~~~~~~~l~~T 133 (136)
T d1a1va1 93 GAYDIIICDECHSTDATSILGIGTVLDQAETAGARLVVLAT 133 (136)
T ss_dssp CCCSEEEEETTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEE
T ss_pred hcCCEEEEecccccCHHHHHHHHHHHHHHHHCCCCcEEEEe
Confidence 5678999999999987754444444443 22344444444
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.61 E-value=0.00054 Score=65.16 Aligned_cols=29 Identities=31% Similarity=0.392 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
-+.+++|+|+||+||||+|++||+.|+..
T Consensus 5 ~g~~I~l~G~~GsGKTTia~~La~~L~~~ 33 (183)
T d1m8pa3 5 QGFTIFLTGYMNSGKDAIARALQVTLNQQ 33 (183)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 35678999999999999999999999865
|
| >d1iqpa1 a.80.1.1 (A:233-327) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.58 E-value=0.0048 Score=55.17 Aligned_cols=87 Identities=21% Similarity=0.263 Sum_probs=74.8
Q ss_pred chhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHH
Q 036794 649 SDEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLR 727 (1152)
Q Consensus 649 ~ee~ifdLldAils~d~~~ALk~L~~LL-~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~ 727 (1152)
.++++.++++.++++++.+|...+++++ ..|.++..|+.+|..++.. . .++-....
T Consensus 3 ~P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~v~~----------------------~-~~~~~~k~ 59 (95)
T d1iqpa1 3 RPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFN----------------------L-PIEEPKKV 59 (95)
T ss_dssp CHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGG----------------------S-SSCHHHHH
T ss_pred CcHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhh----------------------c-CCCHHHHH
Confidence 4567889999999999999999999986 5799999999998775431 1 35566678
Q ss_pred HHHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 728 QALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 728 qaL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
.++..++++|..|-.|.++.+-|+.++..+|
T Consensus 60 ~ll~~la~~d~rL~~G~~e~iQL~alla~~~ 90 (95)
T d1iqpa1 60 LLADKIGEYNFRLVEGANEIIQLEALLAQFT 90 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 8999999999999999999999999999887
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=96.56 E-value=0.0039 Score=63.91 Aligned_cols=29 Identities=28% Similarity=0.460 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++.+++++|.||+|+||||++--||..+.
T Consensus 6 ~~~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 6 GKAPFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp SCTTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45577899999999999999888888765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.49 E-value=0.0063 Score=62.10 Aligned_cols=26 Identities=27% Similarity=0.437 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|.||+|+||||++--||..+.
T Consensus 6 ~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 6 GRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999888887764
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=96.48 E-value=0.00062 Score=64.73 Aligned_cols=26 Identities=23% Similarity=0.326 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|+||||+||||+|+.||+.+++.
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l~~~ 31 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKSGLK 31 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 37899999999999999999998865
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.46 E-value=0.0039 Score=63.99 Aligned_cols=28 Identities=25% Similarity=0.407 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..|++++|.||+|+||||++--||..+.
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~ 36 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV 36 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999888887764
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=96.37 E-value=0.0058 Score=62.28 Aligned_cols=27 Identities=30% Similarity=0.378 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+.+++|.||+|+||||++--||..+..
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~~ 36 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYKG 36 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 357899999999999999888887653
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=96.33 E-value=0.00085 Score=63.34 Aligned_cols=26 Identities=35% Similarity=0.680 Sum_probs=23.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..++|+||||+||||+|+.|++.++.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~~ 28 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLDN 28 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36899999999999999999998764
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=96.07 E-value=0.0014 Score=62.15 Aligned_cols=27 Identities=19% Similarity=0.314 Sum_probs=24.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|+|++|+||||+|+.|++.++..
T Consensus 4 kiI~l~G~~GsGKsTva~~L~~~l~~~ 30 (178)
T d1qhxa_ 4 RMIILNGGSSAGKSGIVRCLQSVLPEP 30 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 478999999999999999999998743
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.84 E-value=0.002 Score=61.38 Aligned_cols=25 Identities=40% Similarity=0.569 Sum_probs=22.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
-.++|+||||+||||+|+.|++.++
T Consensus 6 ~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 6 INILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999875
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=95.72 E-value=0.0016 Score=62.11 Aligned_cols=28 Identities=25% Similarity=0.428 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|.||||+||||+|++|++.++..
T Consensus 4 g~iI~l~G~~GsGKSTia~~La~~lg~~ 31 (176)
T d1zp6a1 4 GNILLLSGHPGSGKSTIAEALANLPGVP 31 (176)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999887644
|
| >d1sxjc1 a.80.1.1 (C:239-333) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.70 E-value=0.043 Score=48.66 Aligned_cols=87 Identities=15% Similarity=0.182 Sum_probs=71.6
Q ss_pred hhhHHHHHHHHHcCCHHHHHHHHHHHH-HhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHH
Q 036794 650 DEKLVDLLDLALSADTVNTVKNLRVIM-ETGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQ 728 (1152)
Q Consensus 650 ee~ifdLldAils~d~~~ALk~L~~LL-~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~q 728 (1152)
.+.+-++++.++++++..|.+.++.|+ +.|.++..|+.+|.+++... ...+.....+
T Consensus 3 P~~I~~il~~~l~~~f~~a~~~l~~l~~~~G~s~~dIl~~l~~~i~~~----------------------~~~~~~~k~~ 60 (95)
T d1sxjc1 3 PSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY----------------------ELQNEETRVH 60 (95)
T ss_dssp HHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS----------------------CCSSHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------------------CCCCHHHHHH
Confidence 456788999999999999999999997 45999999999998865421 1122334467
Q ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHcC
Q 036794 729 ALKTLSEAEKQLRMSNDKLTWLTAALLQLA 758 (1152)
Q Consensus 729 aL~~L~eaD~qLK~s~dprl~LE~lLLkLa 758 (1152)
+++.++++|..|-.|.+..+-|..++-.++
T Consensus 61 ll~~la~~e~rL~~G~~e~lQL~~lla~~~ 90 (95)
T d1sxjc1 61 LLTKLADIEYSISKGGNDQIQGSAVIGAIK 90 (95)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 899999999999999999999999988775
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.61 E-value=0.0025 Score=61.47 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.6
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.|++|+||||+++.||+.++..
T Consensus 4 IvliG~~G~GKSTig~~La~~l~~~ 28 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKALGVG 28 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5677999999999999999999865
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=95.59 E-value=0.0029 Score=61.28 Aligned_cols=26 Identities=35% Similarity=0.514 Sum_probs=23.6
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+|+.||+.+++.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~Lg~~ 29 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARALGYE 29 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 36788999999999999999999976
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=95.40 E-value=0.0033 Score=60.63 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.|+||+||||+++.||+.+++.
T Consensus 3 I~liG~~GsGKsTi~k~La~~l~~~ 27 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDLDLV 27 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCC
Confidence 6788999999999999999999875
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=95.31 E-value=0.0045 Score=58.42 Aligned_cols=27 Identities=33% Similarity=0.367 Sum_probs=23.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+++.|+|++|+||||+++.|++.+...
T Consensus 3 Pvi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 3 PLLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 478999999999999999999987643
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.28 E-value=0.0044 Score=60.83 Aligned_cols=29 Identities=17% Similarity=0.196 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.|..++|.||||+||||+|+.||+.++..
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~g~~ 33 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDFGWV 33 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCc
Confidence 34578999999999999999999998744
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=95.14 E-value=0.0057 Score=60.40 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++.+.+.||||+||+|.|+.||+.++..
T Consensus 2 ~~piI~I~GppGSGKgT~ak~La~~~gl~ 30 (225)
T d1ckea_ 2 IAPVITIDGPSGAGKGTLCKAMAEALQWH 30 (225)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 35688999999999999999999999855
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=95.08 E-value=0.049 Score=56.08 Aligned_cols=110 Identities=15% Similarity=0.227 Sum_probs=57.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCC-------CCCC--HHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPV-------GNFD--FESILDLLD 514 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaa-------s~~~--vdeIreLle 514 (1152)
+.++|+||...|||++.|.++-.+.-...-...||..+ .+..- ..-+..+... +.+. ..++..+++
T Consensus 42 ~~~iiTGpN~~GKSt~lk~i~l~~~laq~G~~VpA~~a----~~~~~-d~I~~~~~~~d~~~~~~S~F~~E~~~~~~il~ 116 (234)
T d1wb9a2 42 RMLIITGPNMGGKSTYMRQTALIALMAYIGSYVPAQKV----EIGPI-DRIFTRVGAADDLASGRSTFMVEMTETANILH 116 (234)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHTTTCCBSSSEE----EECCC-CEEEEEEC-----------CHHHHHHHHHHHH
T ss_pred eEEEEeccCchhhHHHHHHHHHHHHHHHcCCeEecCce----ecccc-hhheeEEccCcccccchhHHHHHHHHHHHHHH
Confidence 57899999999999999999876533322222222221 11100 0011122111 1121 234445555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCH--HH---HHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSP--DS---WSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~--ea---qnaLLklLEepp~~VifILaTN~~d 565 (1152)
.+ .++.+|+|||+..=+. +. ..+++.+|... ..+.+|++|...+
T Consensus 117 ~~------~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~-~~~~~i~tTH~~~ 165 (234)
T d1wb9a2 117 NA------TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-IKALTLFATHYFE 165 (234)
T ss_dssp HC------CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-TCCEEEEECSCGG
T ss_pred hc------ccccEEeecccccCCChhhhhHHHHHhhhhhhcc-ccceEEEecchHH
Confidence 43 3457999999987542 22 23555555432 3556777776544
|
| >d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase PF2015 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: putative ATP-dependent RNA helicase PF2015 species: Pyrococcus furiosus [TaxId: 2261]
Probab=95.04 E-value=0.017 Score=56.54 Aligned_cols=21 Identities=33% Similarity=0.371 Sum_probs=17.2
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
.|+++|+|+|||.++-.++..
T Consensus 26 ~lv~~pTGsGKT~i~~~~~~~ 46 (200)
T d1wp9a1 26 CLIVLPTGLGKTLIAMMIAEY 46 (200)
T ss_dssp EEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEeCCCCcHHHHHHHHHHH
Confidence 689999999999877766654
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.02 E-value=0.0078 Score=57.14 Aligned_cols=27 Identities=22% Similarity=0.326 Sum_probs=24.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..++|.|++|+||||+++.|++.++..
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~ 28 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE 28 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 368999999999999999999998755
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.94 E-value=0.0065 Score=59.46 Aligned_cols=28 Identities=32% Similarity=0.347 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
|..++++|.||+||||+|+.|++.++..
T Consensus 2 p~li~l~GlpgsGKSTla~~L~~~l~~~ 29 (213)
T d1bifa1 2 PTLIVMVGLPARGKTYISKKLTRYLNFI 29 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 4568999999999999999999988754
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.93 E-value=0.0065 Score=58.56 Aligned_cols=25 Identities=28% Similarity=0.349 Sum_probs=23.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.||||+||||.|+.||+.++..
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~~~~ 27 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAAYGIP 27 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCc
Confidence 6899999999999999999998765
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.90 E-value=0.0061 Score=60.00 Aligned_cols=27 Identities=15% Similarity=0.249 Sum_probs=24.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.++|.||||+||||+|+.|++.++..
T Consensus 9 ~iI~i~GppGSGKsT~a~~La~~~g~~ 35 (196)
T d1ukza_ 9 SVIFVLGGPGAGKGTQCEKLVKDYSFV 35 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 478899999999999999999998754
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.89 E-value=0.0067 Score=58.90 Aligned_cols=25 Identities=32% Similarity=0.489 Sum_probs=23.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.||||+||||.|+.|++.+++.
T Consensus 3 I~i~G~pGsGKsT~a~~La~~~g~~ 27 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEKLGIP 27 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCc
Confidence 6789999999999999999999765
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.0071 Score=59.17 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=24.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
|..++|.||||+||||.|+.||+.++..
T Consensus 1 p~iI~i~GppGSGKsT~a~~La~~~g~~ 28 (194)
T d1teva_ 1 PLVVFVLGGPGAGKGTQCARIVEKYGYT 28 (194)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 3468999999999999999999998754
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=94.72 E-value=0.0068 Score=59.37 Aligned_cols=27 Identities=11% Similarity=0.194 Sum_probs=23.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
.++|.||||+||||+|+.|++.++...
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~~~~~ 31 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKYQLAH 31 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHHCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCcE
Confidence 478999999999999999999987553
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=94.69 E-value=0.0044 Score=65.02 Aligned_cols=42 Identities=19% Similarity=0.370 Sum_probs=29.8
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+..|+|+||.-. |.......+++.|.+...+..+|++|.++.
T Consensus 170 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 212 (253)
T d3b60a1 170 DSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLS 212 (253)
T ss_dssp CCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGG
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHH
Confidence 367999999855 556666677777766444566778888766
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.68 E-value=0.026 Score=52.98 Aligned_cols=43 Identities=19% Similarity=0.300 Sum_probs=26.7
Q ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEcCCCC
Q 036794 523 SQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVSSSLD 565 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaTN~~d 565 (1152)
+..-++++|..+.........+..++........+|++.|..|
T Consensus 81 ~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~D 123 (161)
T d2gj8a1 81 ADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKAD 123 (161)
T ss_dssp CSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHH
T ss_pred ccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhh
Confidence 3445677777666555555555566666555666777777655
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=94.56 E-value=0.027 Score=56.47 Aligned_cols=26 Identities=27% Similarity=0.307 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||+|||++|..+|..+.
T Consensus 26 gsl~li~G~pGsGKT~l~~qia~~~~ 51 (242)
T d1tf7a2 26 DSIILATGATGTGKTLLVSRFVENAC 51 (242)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988753
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=94.43 E-value=0.072 Score=57.33 Aligned_cols=108 Identities=12% Similarity=0.121 Sum_probs=60.1
Q ss_pred cHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccceEEeCCCCCCC
Q 036794 426 QNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRNIKEVGPVGNFD 505 (1152)
Q Consensus 426 Qe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~dviEIdaas~~~ 505 (1152)
.+.....|..+++.+. .+|++||+|+||||+.+++...+.....- .....-..+.......+..+......+
T Consensus 152 ~~~~~~~l~~~v~~~~---nili~G~tgSGKTT~l~al~~~i~~~~ri-----vtiEd~~El~l~~~~~~~~~~~~~~~~ 223 (323)
T d1g6oa_ 152 KEQAISAIKDGIAIGK---NVIVCGGTGSGKTTYIKSIMEFIPKEERI-----ISIEDTEEIVFKHHKNYTQLFFGGNIT 223 (323)
T ss_dssp HHHHHHHHHHHHHHTC---CEEEEESTTSSHHHHHHHHGGGSCTTCCE-----EEEESSCCCCCSSCSSEEEEECBTTBC
T ss_pred HHHHHHHHHHHHHhCC---CEEEEeeccccchHHHHHHhhhcccccce-----eeccchhhhhcccccccceeccccchh
Confidence 4566777778887665 38999999999999999998766432110 000000111111112233333323333
Q ss_pred HHHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHHHHHHHHHHHhhC
Q 036794 506 FESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPDSWSAISKVVDRA 551 (1152)
Q Consensus 506 vdeIreLle~a~~~P~~a~~kVVIIDEID~Ls~eaqnaLLklLEep 551 (1152)
. .+++..+.. -....|++.|+-. .++.. +++.+...
T Consensus 224 ~---~~ll~~~lR----~~pd~iivgEiR~--~ea~~-~l~a~~tG 259 (323)
T d1g6oa_ 224 S---ADCLKSCLR----MRPDRIILGELRS--SEAYD-FYNVLCSG 259 (323)
T ss_dssp H---HHHHHHHTT----SCCSEEEESCCCS--THHHH-HHHHHHTT
T ss_pred H---HHHHHHHhc----cCCCcccCCccCc--hhHHH-HHHHHHhc
Confidence 3 344544322 3447899999863 45554 56677653
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.38 E-value=0.01 Score=58.04 Aligned_cols=25 Identities=32% Similarity=0.472 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.||||+||||.|+.||+.++..
T Consensus 6 iil~G~pGSGKsT~a~~La~~~g~~ 30 (190)
T d1ak2a1 6 AVLLGPPGAGKGTQAPKLAKNFCVC 30 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHTCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCe
Confidence 5678999999999999999998754
|
| >d2fz4a1 c.37.1.19 (A:24-229) DNA repair protein RAD25 {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DNA repair protein RAD25 species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=94.32 E-value=0.054 Score=54.02 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=19.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHc
Q 036794 446 YVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+|.+|+|+|||.+|-.++..++
T Consensus 88 ~ll~~~tG~GKT~~a~~~~~~~~ 110 (206)
T d2fz4a1 88 GCIVLPTGSGKTHVAMAAINELS 110 (206)
T ss_dssp EEEEESSSTTHHHHHHHHHHHSC
T ss_pred cEEEeCCCCCceehHHhHHHHhc
Confidence 47889999999999888887654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.28 E-value=0.011 Score=58.18 Aligned_cols=28 Identities=14% Similarity=0.242 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+..++|.||||+||+|.|+.|++.++..
T Consensus 8 ~~iI~l~G~pGSGKsT~a~~La~~~g~~ 35 (194)
T d3adka_ 8 SKIIFVVGGPGSGKGTQCEKIVQKYGYT 35 (194)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHTCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 3568999999999999999999987754
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=94.26 E-value=0.012 Score=57.30 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.9
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.||||+||||.|+.||+.+++.
T Consensus 3 I~i~G~pGSGKsT~a~~La~~~g~~ 27 (182)
T d1s3ga1 3 IVLMGLPGAGKGTQADRIVEKYGTP 27 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCc
Confidence 6789999999999999999999765
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=94.24 E-value=0.012 Score=61.10 Aligned_cols=25 Identities=28% Similarity=0.554 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+-|.||.|+||||+++.|+..+.
T Consensus 29 e~vaivG~sGsGKSTLl~ll~gl~~ 53 (242)
T d1mv5a_ 29 SIIAFAGPSGGGKSTIFSLLERFYQ 53 (242)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhC
Confidence 3688999999999999999987654
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.18 E-value=0.012 Score=57.30 Aligned_cols=25 Identities=28% Similarity=0.486 Sum_probs=22.5
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.||||+||||+|+.||+.++..
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~~g~~ 29 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQERFHAA 29 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 5788999999999999999998754
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=94.15 E-value=0.046 Score=56.03 Aligned_cols=106 Identities=14% Similarity=0.222 Sum_probs=57.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccccCCCccc-eEEeCCC-------CCC--CHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISHDRGKSRN-IKEVGPV-------GNF--DFESILDLLD 514 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i~~g~~~d-viEIdaa-------s~~--~vdeIreLle 514 (1152)
.++|+||...|||++.|.++-..--...-...||... .+ +-... +..++.. +.+ ...++..+++
T Consensus 37 ~~iiTGpN~~GKSt~lk~i~l~~ilAq~G~~vpA~~~----~i--~~~d~I~~~~~~~d~~~~~~StF~~el~~~~~il~ 110 (224)
T d1ewqa2 37 LVLITGPNMAGKSTFLRQTALIALLAQVGSFVPAEEA----HL--PLFDGIYTRIGASDDLAGGKSTFMVEMEEVALILK 110 (224)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBSSSEE----EE--CCCSEEEEECCC------CCSHHHHHHHHHHHHHH
T ss_pred EEEEECCCccccchhhhhhHHHHHHHhccceeecCce----EE--eecceEEEEECCCccccCCccHHHHhHHHHHHHhc
Confidence 6899999999999999999875432221111222221 11 11101 1122211 111 1234445555
Q ss_pred HHhhCCCCCCceEEEEeCCCCCCHH-----HHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 515 NMVTSRPPSQYRIFVFDDCDTLSPD-----SWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 515 ~a~~~P~~a~~kVVIIDEID~Ls~e-----aqnaLLklLEepp~~VifILaTN~~ 564 (1152)
.+ ....+|+|||+..=+.. ...+++..|.+. +..+|++|+..
T Consensus 111 ~~------~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~--~~~~i~tTH~~ 157 (224)
T d1ewqa2 111 EA------TENSLVLLDEVGRGTSSLDGVAIATAVAEALHER--RAYTLFATHYF 157 (224)
T ss_dssp HC------CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHH--TCEEEEECCCH
T ss_pred cC------CCCcEEeecccccCcchhhhcchHHHHHHHHhhc--CcceEEeeech
Confidence 43 45689999999876432 233666666553 45677777653
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=94.08 E-value=1.8 Score=46.09 Aligned_cols=31 Identities=23% Similarity=0.202 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
...++.+=|+||||.||||+...|+..+...
T Consensus 51 ~~~~~~IgitG~pGaGKSTLi~~l~~~~~~~ 81 (327)
T d2p67a1 51 CGNTLRLGVTGTPGAGKSTFLEAFGMLLIRE 81 (327)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred cCCceEEEeeCCCCCCHHHHHHHHHHHHHhc
Confidence 3445678899999999999999999877543
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.07 E-value=0.029 Score=53.79 Aligned_cols=42 Identities=24% Similarity=0.271 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCC--CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 429 VAQALSNAVMRRKV--GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 429 v~q~Lk~aL~~gri--~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++.|...+..-+. +-.+-|+||+|+||||+|+.|+..++..
T Consensus 6 ~~~~~~~~~~~~~~~~~~iIgI~G~~GSGKSTla~~L~~~l~~~ 49 (198)
T d1rz3a_ 6 RIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQ 49 (198)
T ss_dssp HHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhccCCCCEEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 44555555544322 2356699999999999999999988754
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=94.06 E-value=0.013 Score=55.94 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=23.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.++|.|++|+||||+++.|++.+...
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~~~ 28 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILDNQ 28 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 57899999999999999999998754
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.92 E-value=0.014 Score=56.42 Aligned_cols=25 Identities=16% Similarity=0.263 Sum_probs=22.7
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.||||+||||.|+.|++.+++.
T Consensus 3 I~i~G~pGSGKsT~~~~La~~~~~~ 27 (179)
T d1e4va1 3 IILLGAPVAGKGTQAQFIMEKYGIP 27 (179)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 6789999999999999999998754
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=93.91 E-value=0.014 Score=59.04 Aligned_cols=31 Identities=26% Similarity=0.353 Sum_probs=26.9
Q ss_pred HhCCCCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 438 MRRKVGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 438 ~~gri~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++.+.+++|+|.||+||||+|+.|++.+.
T Consensus 19 ~~~~kg~vIwltGlsGsGKTTia~~L~~~l~ 49 (208)
T d1m7ga_ 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLV 49 (208)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4456677899999999999999999998774
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=93.85 E-value=0.31 Score=44.52 Aligned_cols=21 Identities=19% Similarity=0.238 Sum_probs=18.9
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||++++.+...
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~ 23 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLG 23 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999998754
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=93.77 E-value=0.025 Score=55.97 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=26.7
Q ss_pred CCceEEEEeCCCCCCHH----HHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPD----SWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e----aqnaLLklLEepp~~VifILaTN~ 563 (1152)
....+||+||+|.+... ....++..+...+.++.+|+.|..
T Consensus 137 ~~~~~ii~DE~h~~~~~~r~~~~~~~l~~i~~~~~~~~~l~lSAT 181 (202)
T d2p6ra3 137 KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKALRVIGLSAT 181 (202)
T ss_dssp GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTTCEEEEEECC
T ss_pred hhhhhccccHHHHhcccccchHHHHHHHHHHhcCCCCcEEEEcCC
Confidence 45679999999987533 244566666665556666665433
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=93.76 E-value=0.29 Score=46.67 Aligned_cols=21 Identities=14% Similarity=0.218 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
.+.|.|.+|+|||+++..|..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~ 27 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLG 27 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999864
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=93.69 E-value=0.014 Score=57.67 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=22.2
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++|.||||+||||+|+.||+.++..
T Consensus 9 IiliG~PGSGKtT~a~~La~~~g~~ 33 (189)
T d2ak3a1 9 AAIMGAPGSGKGTVSSRITKHFELK 33 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHHBCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCe
Confidence 5677999999999999999998754
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=93.64 E-value=0.013 Score=60.88 Aligned_cols=43 Identities=19% Similarity=0.366 Sum_probs=31.5
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+.+|+|+||+-. |.......+++.|.+...+..+|++|.+++.
T Consensus 157 ~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~ 200 (241)
T d2pmka1 157 NPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLST 200 (241)
T ss_dssp CCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGG
T ss_pred ccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHH
Confidence 468999999854 5666777777777764446677888988763
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.63 E-value=0.099 Score=51.88 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=22.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+||||+|||++|..++....
T Consensus 38 ~~~~i~G~~GsGKT~lalq~~~~~~ 62 (258)
T d1v5wa_ 38 AITEAFGEFRTGKTQLSHTLCVTAQ 62 (258)
T ss_dssp EEEEEECCTTCTHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4899999999999999999987644
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.024 Score=59.53 Aligned_cols=85 Identities=25% Similarity=0.377 Sum_probs=48.7
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCCc-cceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGKS-RNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~~-~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..++|+||||+|||++|..++...-... ..|.|...-..+ ..|.. ..++...+ ...+++.++++.
T Consensus 54 g~itei~G~~gsGKTtl~l~~~~~~q~~g----~~~vyidtE~~~~~~~a~~~Gvd~d~v~~~~~---~~~E~~~~~i~~ 126 (263)
T d1u94a1 54 GRIVEIYGPESSGKTTLTLQVIAAAQREG----KTCAFIDAEHALDPIYARKLGVDIDNLLCSQP---DTGEQALEICDA 126 (263)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCC----CEEEEEccccccCHHHHHHhCCCHHHEEEecC---CCHHHHHHHHHH
Confidence 46899999999999999988887754321 111111100000 11211 22333322 345666666666
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||-+..+.
T Consensus 127 l~~~---~~~~liViDSi~al~ 145 (263)
T d1u94a1 127 LARS---GAVDVIVVDSVAALT 145 (263)
T ss_dssp HHHH---TCCSEEEEECGGGCC
T ss_pred HHhc---CCCCEEEEECccccc
Confidence 5433 345799999998774
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=93.43 E-value=0.056 Score=52.71 Aligned_cols=52 Identities=13% Similarity=0.272 Sum_probs=36.2
Q ss_pred cCcccCcHHHHHHHHHHHHh------CCCCcEEEEEcCCCchHHHHHHHHHHHHcccC
Q 036794 420 FRDLVGQNLVAQALSNAVMR------RKVGLLYVFYGPHGTGKTSCARIFARALNCQS 471 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~------gri~~~yLL~GPpGTGKTtlARaLAkeL~~~~ 471 (1152)
|...+..+..+..+-..+.. .+.+-.++|.|+=|+|||+++|.|++.++...
T Consensus 4 ~~~~l~~e~~t~~lg~~la~~l~~~~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~~~ 61 (158)
T d1htwa_ 4 LTQYIPDEFSMLRFGKKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIGHQG 61 (158)
T ss_dssp EEEEECSHHHHHHHHHHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHTTCCS
T ss_pred eeeeCCCHHHHHHHHHHHHHHHHhccCCCCeEEEEecCCCccHHHHHHHHHhhccccc
Confidence 34445555555555443332 23445789999999999999999999998753
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.02 Score=59.82 Aligned_cols=42 Identities=17% Similarity=0.397 Sum_probs=30.3
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCC--CEEEEEEcCCCC
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPR--RVVFILVSSSLD 565 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~--~VifILaTN~~d 565 (1152)
+..|+|+||.-. |.......+++.|.+... +..+|++|.++.
T Consensus 169 ~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~ 213 (251)
T d1jj7a_ 169 KPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLS 213 (251)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHH
T ss_pred CCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHH
Confidence 468999999744 566677778888776432 567788887754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.35 E-value=0.23 Score=46.80 Aligned_cols=21 Identities=29% Similarity=0.594 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|.+|+|||++++.+...
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999988653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.31 E-value=0.021 Score=56.55 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.4
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+-+.||||+||||.|+.||+.++..
T Consensus 6 IaIdGp~GsGKgT~ak~La~~lg~~ 30 (223)
T d1q3ta_ 6 IAIDGPASSGKSTVAKIIAKDFGFT 30 (223)
T ss_dssp EEEECSSCSSHHHHHHHHHHHHCCE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCc
Confidence 4577999999999999999999865
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.17 E-value=0.27 Score=51.42 Aligned_cols=87 Identities=22% Similarity=0.337 Sum_probs=50.5
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCCCc-cceEEeCCCCCCCHHHHHHHH
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRGKS-RNIKEVGPVGNFDFESILDLL 513 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g~~-~dviEIdaas~~~vdeIreLl 513 (1152)
..+..+.|+||+|+|||++|..++...-... ..|.|...-..+ ..|.. ..++.+.+ ...++..+++
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~~aqk~g----~~v~yiDtE~~~~~~~a~~~Gvd~d~i~~~~~---~~~E~~~~~~ 127 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVAQAQKAG----GTCAFIDAEHALDPVYARALGVNTDELLVSQP---DNGEQALEIM 127 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHTT----CCEEEEESSCCCCHHHHHHTTCCGGGCEEECC---SSHHHHHHHH
T ss_pred cCceEEEEecCCccchHHHHHHHHHHHHhCC----CEEEEEECCccCCHHHHHHhCCCchhEEEEcC---CCHHHHHHHH
Confidence 3446899999999999999998887654321 111111111011 01111 12333322 3466667777
Q ss_pred HHHhhCCCCCCceEEEEeCCCCCC
Q 036794 514 DNMVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 514 e~a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+.+... ....+||||-+..+.
T Consensus 128 ~~l~~~---~~~~liIiDSi~al~ 148 (268)
T d1xp8a1 128 ELLVRS---GAIDVVVVDSVAALT 148 (268)
T ss_dssp HHHHTT---TCCSEEEEECTTTCC
T ss_pred HHHHhc---CCCcEEEEecccccc
Confidence 776433 456899999998774
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=93.17 E-value=0.01 Score=62.25 Aligned_cols=43 Identities=21% Similarity=0.339 Sum_probs=31.7
Q ss_pred CceEEEEeCCCC-CCHHHHHHHHHHHhhCCCCEEEEEEcCCCCc
Q 036794 524 QYRIFVFDDCDT-LSPDSWSAISKVVDRAPRRVVFILVSSSLDA 566 (1152)
Q Consensus 524 ~~kVVIIDEID~-Ls~eaqnaLLklLEepp~~VifILaTN~~dk 566 (1152)
+..|+|+||.-. |.......+++.|.....+..+|++|++++.
T Consensus 172 ~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~ 215 (255)
T d2hyda1 172 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLST 215 (255)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGG
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHH
Confidence 467999999855 5667777888888765555567788887763
|
| >d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative ATP-dependent RNA helicase DHH1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.06 E-value=0.26 Score=48.73 Aligned_cols=41 Identities=20% Similarity=0.354 Sum_probs=27.6
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~ 563 (1152)
..-+.++|||+|.|... ....+..+++..+....+|+.+..
T Consensus 142 ~~l~~lV~DEaD~l~~~~f~~~v~~I~~~l~~~~Q~il~SAT 183 (206)
T d1s2ma1 142 SDCSLFIMDEADKMLSRDFKTIIEQILSFLPPTHQSLLFSAT 183 (206)
T ss_dssp TTCCEEEEESHHHHSSHHHHHHHHHHHTTSCSSCEEEEEESC
T ss_pred ccceEEEeechhhhhhhhhHHHHHHHHHhCCCCCEEEEEEEe
Confidence 45578999999988655 445666666666665555555443
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=92.96 E-value=0.2 Score=47.44 Aligned_cols=21 Identities=14% Similarity=0.260 Sum_probs=19.1
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
++.|.|++|+|||++++.|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~ 22 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVK 22 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999964
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=92.43 E-value=0.14 Score=52.68 Aligned_cols=22 Identities=18% Similarity=0.422 Sum_probs=17.1
Q ss_pred CCCCCCceEEEEeCCCCCCHHH
Q 036794 519 SRPPSQYRIFVFDDCDTLSPDS 540 (1152)
Q Consensus 519 ~P~~a~~kVVIIDEID~Ls~ea 540 (1152)
.....+.++|||||+|.+....
T Consensus 95 ~~~~~~~~~vViDE~H~~~~~~ 116 (305)
T d2bmfa2 95 PIRVPNYNLIIMDEAHFTDPAS 116 (305)
T ss_dssp SSCCCCCSEEEEESTTCCSHHH
T ss_pred CccccceeEEEeeeeeecchhh
Confidence 3444678899999999997654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.39 E-value=0.039 Score=52.51 Aligned_cols=27 Identities=26% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
.+..++|+||||+|||++|..+|....
T Consensus 22 ~G~v~~i~G~~GsGKT~l~l~la~~~~ 48 (242)
T d1n0wa_ 22 TGSITEMFGEFRTGKTQICHTLAVTCQ 48 (242)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345899999999999999999987643
|
| >d1sxjb1 a.80.1.1 (B:231-322) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: post-AAA+ oligomerization domain-like superfamily: post-AAA+ oligomerization domain-like family: DNA polymerase III clamp loader subunits, C-terminal domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.26 E-value=0.22 Score=43.72 Aligned_cols=78 Identities=12% Similarity=0.172 Sum_probs=64.2
Q ss_pred HHcCCHHHHHHHHHHH-HHhCCChHHHHHHHHHHHHHHHhchhhhhcchhHHHHHHhCCCCcccHHHHHHHHHHHHHHHH
Q 036794 660 ALSADTVNTVKNLRVI-METGVEPLALMSQLATVITDILAGSYDFTKDRHRRKFFRRQPLSKEEMEKLRQALKTLSEAEK 738 (1152)
Q Consensus 660 ils~d~~~ALk~L~~L-L~~G~dPl~ILs~La~qiRdLL~ak~~~~~g~~~~~~~~r~~ls~~s~~kL~qaL~~L~eaD~ 738 (1152)
+..+++.+|++.+..+ ...|.++..|+.+|.+++.. ...++-....+++..++++|.
T Consensus 10 l~~~~f~~a~~~l~~~l~~~Gys~~DIi~~l~~~i~~----------------------~~~~~e~~k~~il~~la~~~~ 67 (92)
T d1sxjb1 10 LLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKN----------------------LAQVKESVRLEMIKEIGLTHM 67 (92)
T ss_dssp HSCSSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHT----------------------CTTSCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH----------------------cccccHHHHHHHHHHHHHHHH
Confidence 4678999999999885 57899999999999887642 123444556678999999999
Q ss_pred HhccCCCHHHHHHHHHHHcCC
Q 036794 739 QLRMSNDKLTWLTAALLQLAP 759 (1152)
Q Consensus 739 qLK~s~dprl~LE~lLLkLa~ 759 (1152)
++-.|.+..+-|..++.++|.
T Consensus 68 rl~~G~~e~lQL~~lla~i~~ 88 (92)
T d1sxjb1 68 RILEGVGTYLQLASMLAKIHK 88 (92)
T ss_dssp HHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHHHHHH
Confidence 999999999999999999873
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=92.24 E-value=0.24 Score=46.34 Aligned_cols=20 Identities=25% Similarity=0.449 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||++.+.|..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~ 24 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNG 24 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHcC
Confidence 78999999999999998843
|
| >d2eyqa3 c.37.1.19 (A:546-778) Transcription-repair coupling factor, TRCF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Transcription-repair coupling factor, TRCF species: Escherichia coli [TaxId: 562]
Probab=92.10 E-value=0.82 Score=46.73 Aligned_cols=46 Identities=22% Similarity=0.104 Sum_probs=36.8
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
|..--.|..+...+.+.+..+..- ..||+|..|+|||.++-..+..
T Consensus 54 ~~lt~~Q~~~~~~i~~~~~~~~~~-~~LL~GdvGsGKT~V~~~a~~~ 99 (233)
T d2eyqa3 54 FETTPDQAQAINAVLSDMCQPLAM-DRLVCGDVGFGKTEVAMRAAFL 99 (233)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCC-EEEEECCCCTTTHHHHHHHHHH
T ss_pred cccchhHHHHHHHHHHHHhccCcc-CeEEEcCCCCCcHHHHHHHHHH
Confidence 565667888889999988887665 5799999999999988666554
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=92.09 E-value=0.43 Score=48.28 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=22.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..++|+|++|+|||+++..||..+.
T Consensus 30 ~~~~i~G~~G~GKS~l~l~la~~ia 54 (274)
T d1nlfa_ 30 TVGALVSPGGAGKSMLALQLAAQIA 54 (274)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999988764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.15 Score=48.40 Aligned_cols=21 Identities=38% Similarity=0.610 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||++++.+...
T Consensus 8 i~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999998753
|
| >d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.06 E-value=0.095 Score=52.98 Aligned_cols=56 Identities=18% Similarity=0.399 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhhCCCCCCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCCC
Q 036794 507 ESILDLLDNMVTSRPPSQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSSL 564 (1152)
Q Consensus 507 deIreLle~a~~~P~~a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~~ 564 (1152)
+.+.+++.. .......-+.|+|||+|.|... ..+.+..+++..+.+.-+|+.+...
T Consensus 140 ~rl~~~l~~--~~~~~~~l~~lVlDEaD~ll~~~f~~~~~~Il~~~~~~~Q~il~SAT~ 196 (218)
T d2g9na1 140 GRVFDMLNR--RYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQKLNSNTQVVLLSATM 196 (218)
T ss_dssp HHHHHHHHT--TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESCC
T ss_pred hhHHHHHhc--CCcccccceEEEeeecchhhcCchHHHHHHHHHhCCCCCeEEEEEecC
Confidence 556666543 2234466789999999998654 3456666677766667777766544
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.00 E-value=0.078 Score=50.45 Aligned_cols=20 Identities=30% Similarity=0.522 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 68999999999999998865
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.98 E-value=0.12 Score=49.16 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|.+|+|||+++..+...
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988653
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=91.77 E-value=2.5 Score=44.77 Aligned_cols=31 Identities=16% Similarity=0.225 Sum_probs=25.2
Q ss_pred hCCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 439 RRKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 439 ~gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
....+..+=|+||||+||||+.-.+...+..
T Consensus 47 ~~~~~~~igitG~pGaGKSTli~~l~~~~~~ 77 (323)
T d2qm8a1 47 QTGRAIRVGITGVPGVGKSTTIDALGSLLTA 77 (323)
T ss_dssp GCCCSEEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred ccCCceEEeeeCCCCCCHHHHHHHHHHHHhh
Confidence 3445567889999999999999999987643
|
| >d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Initiation factor 4a species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.75 E-value=0.12 Score=51.86 Aligned_cols=41 Identities=17% Similarity=0.396 Sum_probs=28.2
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~ 563 (1152)
..-+.++|||+|.+... ..+.+.++++..+.+..+++.+..
T Consensus 150 ~~l~~lVlDEad~lld~~f~~~v~~I~~~~~~~~Q~vl~SAT 191 (212)
T d1qdea_ 150 DKIKMFILDEADEMLSSGFKEQIYQIFTLLPPTTQVVLLSAT 191 (212)
T ss_dssp TTCCEEEEETHHHHHHTTCHHHHHHHHHHSCTTCEEEEEESS
T ss_pred CcceEEeehhhhhhcccchHHHHHHHHHhCCCCCeEEEEEee
Confidence 55689999999988654 345667777776666655555543
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.72 E-value=0.22 Score=48.66 Aligned_cols=22 Identities=23% Similarity=0.200 Sum_probs=19.5
Q ss_pred EEEEEcCCCchHHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAke 466 (1152)
.++|.|++|+|||++...|...
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.68 E-value=0.25 Score=51.76 Aligned_cols=85 Identities=22% Similarity=0.302 Sum_probs=46.3
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHcccCCCCCCCCCCCCccccc------cCC-CccceEEeCCCCCCCHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQSLEQPKPCGFCNSCISH------DRG-KSRNIKEVGPVGNFDFESILDLLDN 515 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~~~e~~epcg~c~~c~~i------~~g-~~~dviEIdaas~~~vdeIreLle~ 515 (1152)
+..+.|+||+|+|||++|..++........ .|.|...-..+ ..| ....++.+.+ ...+++.++++.
T Consensus 60 g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~----~~vyIDtE~~~~~e~a~~~GvD~d~il~~~~---~~~E~~~~~~~~ 132 (269)
T d1mo6a1 60 GRVIEIYGPESSGKTTVALHAVANAQAAGG----VAAFIDAEHALDPDYAKKLGVDTDSLLVSQP---DTGEQALEIADM 132 (269)
T ss_dssp SSEEEEECSSSSSHHHHHHHHHHHHHHTTC----EEEEEESSCCCCHHHHHHHTCCGGGCEEECC---SSHHHHHHHHHH
T ss_pred ceeEEEecCCCcHHHHHHHHHHHHHhcCCC----EEEEEECCccCCHHHHHHhCCCHHHeEEecC---CCHHHHHHHHHH
Confidence 468999999999999999877765432211 01110000000 001 1122333332 335666666666
Q ss_pred HhhCCCCCCceEEEEeCCCCCC
Q 036794 516 MVTSRPPSQYRIFVFDDCDTLS 537 (1152)
Q Consensus 516 a~~~P~~a~~kVVIIDEID~Ls 537 (1152)
+... ....+||||-+..+.
T Consensus 133 l~~~---~~~~liIiDSi~al~ 151 (269)
T d1mo6a1 133 LIRS---GALDIVVIDSVAALV 151 (269)
T ss_dssp HHHT---TCEEEEEEECSTTCC
T ss_pred HHhc---CCCCEEEEecccccc
Confidence 5432 456788888887775
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=91.62 E-value=0.043 Score=54.85 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+||||+|||++|-.++...-
T Consensus 36 G~~~li~G~pGsGKT~~~lq~~~~~~ 61 (254)
T d1pzna2 36 QAITEVFGEFGSGKTQLAHTLAVMVQ 61 (254)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHhh
Confidence 35899999999999999999987643
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.61 E-value=0.24 Score=52.08 Aligned_cols=25 Identities=28% Similarity=0.409 Sum_probs=21.6
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
..+-|.||.|+||||++++|+..+.
T Consensus 63 e~vaivG~nGsGKSTLl~~i~Gl~~ 87 (281)
T d1r0wa_ 63 EMLAITGSTGSGKTSLLMLILGELE 87 (281)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCChHHHHHHHHhCCCc
Confidence 4688999999999999999987553
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.72 Score=43.19 Aligned_cols=21 Identities=29% Similarity=0.471 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.53 E-value=0.079 Score=50.67 Aligned_cols=20 Identities=30% Similarity=0.589 Sum_probs=17.8
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhc
Confidence 68999999999999998764
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.39 E-value=0.062 Score=50.88 Aligned_cols=20 Identities=25% Similarity=0.438 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.34 E-value=0.039 Score=54.45 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
..++|+||||+|||+++..++..
T Consensus 35 ~~~li~G~pGsGKT~l~lq~~~~ 57 (251)
T d1szpa2 35 SITELFGEFRTGKSQLCHTLAVT 57 (251)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHH
Confidence 48999999999999999888643
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.06 E-value=0.28 Score=46.66 Aligned_cols=20 Identities=35% Similarity=0.585 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||++++.+..
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998865
|
| >d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Putative DEAD box RNA helicase species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=91.03 E-value=0.53 Score=46.56 Aligned_cols=41 Identities=15% Similarity=0.382 Sum_probs=28.4
Q ss_pred CCceEEEEeCCCCC-CHHHHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTL-SPDSWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~L-s~eaqnaLLklLEepp~~VifILaTN~ 563 (1152)
..-+.|+|||+|.+ ..+....+.++++..+.+..+|+.+..
T Consensus 144 ~~l~~lViDEad~l~~~~~~~~i~~I~~~~~~~~Q~i~~SAT 185 (208)
T d1hv8a1 144 KNVKYFILDEADEMLNMGFIKDVEKILNACNKDKRILLFSAT 185 (208)
T ss_dssp TSCCEEEEETHHHHHTTTTHHHHHHHHHTSCSSCEEEEECSS
T ss_pred ccCcEEEEEChHHhhcCCChHHHHHHHHhCCCCCeEEEEEcc
Confidence 55679999999975 333455677777776666666666543
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.03 E-value=0.11 Score=49.48 Aligned_cols=21 Identities=29% Similarity=0.336 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||+++..+...
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 689999999999999988654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.80 E-value=0.23 Score=48.28 Aligned_cols=20 Identities=25% Similarity=0.453 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 68999999999999998864
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.77 E-value=0.32 Score=46.04 Aligned_cols=20 Identities=25% Similarity=0.499 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||++.+.+..
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998865
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=90.75 E-value=0.072 Score=51.55 Aligned_cols=25 Identities=28% Similarity=0.582 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
+..++|.||+|+||||+++.|.+..
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~ 26 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERI 26 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999998774
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.60 E-value=0.42 Score=44.68 Aligned_cols=20 Identities=40% Similarity=0.537 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68899999999999998864
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=90.53 E-value=0.42 Score=44.80 Aligned_cols=22 Identities=23% Similarity=0.271 Sum_probs=19.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.-++|.|.+|+|||+++..+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3489999999999999998864
|
| >d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable DEAD box RNA helicase YqfR species: Bacillus stearothermophilus [TaxId: 1422]
Probab=90.42 E-value=0.089 Score=51.94 Aligned_cols=41 Identities=17% Similarity=0.401 Sum_probs=28.0
Q ss_pred CCceEEEEeCCCCCCHHH-HHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPDS-WSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~ea-qnaLLklLEepp~~VifILaTN~ 563 (1152)
..-+.++|||+|.+.... .+.+..++...+.++-+|+.+..
T Consensus 146 ~~l~~lViDEad~ll~~~f~~~v~~I~~~~~~~~Q~il~SAT 187 (209)
T d1q0ua_ 146 HTAHILVVDEADLMLDMGFITDVDQIAARMPKDLQMLVFSAT 187 (209)
T ss_dssp GGCCEEEECSHHHHHHTTCHHHHHHHHHTSCTTCEEEEEESC
T ss_pred ccceEEEEeecccccccccHHHHHHHHHHCCCCCEEEEEEcc
Confidence 456789999999986553 44566666666666666666543
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=90.33 E-value=0.37 Score=49.09 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..+..++|.|+||+|||+++..++..+
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~~~ 59 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQALQW 59 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHhh
Confidence 445689999999999999998888643
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=90.30 E-value=0.4 Score=45.38 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||+++..+..
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 7 VIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.30 E-value=0.33 Score=45.67 Aligned_cols=20 Identities=25% Similarity=0.408 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 6 i~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999998865
|
| >d1gm5a3 c.37.1.19 (A:286-549) RecG helicase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: RecG helicase domain species: Thermotoga maritima [TaxId: 2336]
Probab=90.23 E-value=0.38 Score=50.25 Aligned_cols=46 Identities=24% Similarity=0.262 Sum_probs=35.8
Q ss_pred cCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHH
Q 036794 420 FRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 420 FddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
|.-=-.|..++..+.+.+..+..-. .||+|..|+|||.+|-..+..
T Consensus 82 FeLT~~Q~~ai~ei~~d~~~~~~m~-rLL~GdvGSGKT~Va~~a~~~ 127 (264)
T d1gm5a3 82 FKLTNAQKRAHQEIRNDMISEKPMN-RLLQGDVGSGKTVVAQLAILD 127 (264)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSSCCC-CEEECCSSSSHHHHHHHHHHH
T ss_pred ccCCchHHHHHHHHHHHhhccCcce-eeeeccccccccHHHHHHHHH
Confidence 5444568889999988888776544 699999999999988766654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.02 E-value=0.44 Score=45.07 Aligned_cols=20 Identities=30% Similarity=0.572 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||+++..+..
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998854
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=89.96 E-value=0.088 Score=50.03 Aligned_cols=26 Identities=19% Similarity=0.247 Sum_probs=22.9
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
++-|+|++|+||||++..|+++|...
T Consensus 3 ii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 3 VWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 56799999999999999999988644
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.28 Score=46.25 Aligned_cols=20 Identities=30% Similarity=0.561 Sum_probs=17.6
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||+++..+..
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999988754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.47 Score=44.82 Aligned_cols=20 Identities=40% Similarity=0.727 Sum_probs=17.7
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~ 23 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGG 23 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhC
Confidence 67899999999999998754
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.86 E-value=0.086 Score=52.07 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=23.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
-.+-|+|++|+||||+|+.|++.++..
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~l~~~ 29 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQLLGQN 29 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 346689999999999999999998754
|
| >d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEAD box RNA helicase rck/p54 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.73 Score=45.57 Aligned_cols=41 Identities=17% Similarity=0.328 Sum_probs=26.8
Q ss_pred CCCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcC
Q 036794 522 PSQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSS 562 (1152)
Q Consensus 522 ~a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN 562 (1152)
...-+.|+|||+|.|... ....+..+++..+.+.-+++.+.
T Consensus 144 ~~~l~~lVlDEaD~ll~~~f~~~i~~I~~~~~~~~Q~~l~SA 185 (206)
T d1veca_ 144 VDHVQMIVLDEADKLLSQDFVQIMEDIILTLPKNRQILLYSA 185 (206)
T ss_dssp CTTCCEEEEETHHHHTSTTTHHHHHHHHHHSCTTCEEEEEES
T ss_pred ccccceEEEeccccccccchHHHHHHHHHhCCCCCEEEEEEe
Confidence 355679999999977543 44556666666666555555443
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.74 E-value=0.18 Score=48.12 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999988764
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=89.71 E-value=0.086 Score=51.73 Aligned_cols=26 Identities=27% Similarity=0.284 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+..++|+|+||+|||+++..+|..+.
T Consensus 34 G~l~~i~G~~G~GKT~~~l~~a~~~~ 59 (258)
T d2i1qa2 34 QSVTEFAGVFGSGKTQIMHQSCVNLQ 59 (258)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987753
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.70 E-value=0.085 Score=51.84 Aligned_cols=23 Identities=26% Similarity=0.501 Sum_probs=21.1
Q ss_pred EEEEcCCCchHHHHHHHHHHHHc
Q 036794 446 YVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++|.||+|+|||++++.|++...
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~~ 25 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEHS 25 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999998864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.55 E-value=0.085 Score=51.51 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=21.0
Q ss_pred EEEEcCCCchHHHHHHHHHHHHc
Q 036794 446 YVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
++|+||+|+|||++++.|++...
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~ 26 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEECCCCCCHHHHHHHHHHhCC
Confidence 78999999999999999988854
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.40 E-value=0.26 Score=46.54 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.6
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|.+|+|||++++.+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 689999999999999988653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.40 E-value=0.53 Score=44.58 Aligned_cols=20 Identities=30% Similarity=0.449 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||+++..+..
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57899999999999998865
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=89.18 E-value=0.34 Score=45.78 Aligned_cols=106 Identities=19% Similarity=0.214 Sum_probs=52.6
Q ss_pred EEEEEcCCCchHHH-HHHHHHHHHcccCCC-CCCCC--CCCCccccccCCCccceEEeCCCCCCCHHHHHHHHHHHhhCC
Q 036794 445 LYVFYGPHGTGKTS-CARIFARALNCQSLE-QPKPC--GFCNSCISHDRGKSRNIKEVGPVGNFDFESILDLLDNMVTSR 520 (1152)
Q Consensus 445 ~yLL~GPpGTGKTt-lARaLAkeL~~~~~e-~~epc--g~c~~c~~i~~g~~~dviEIdaas~~~vdeIreLle~a~~~P 520 (1152)
.-|++||=..|||+ +.+.+.+...+.... .-.|- ...........|.......+ ....++++......
T Consensus 4 L~~i~GpMfsGKTteLi~~~~~~~~~~~kv~~ikp~~D~R~~~~i~s~~g~~~~~~~~--------~~~~~~~~~~~~~~ 75 (139)
T d2b8ta1 4 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEV--------ESAPEILNYIMSNS 75 (139)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEE--------SSTHHHHHHHHSTT
T ss_pred EEEEEccccCHHHHHHHHHHHHHHHCCCcEEEEEEcccccccceEEcccCceeeeEEe--------ccchhhHHHHHhhc
Confidence 45899999999998 666665543222100 00000 00000111111111111222 12233344433333
Q ss_pred CCCCceEEEEeCCCCCCHHHHHHHHHHHhhCCCCEEEEEEc
Q 036794 521 PPSQYRIFVFDDCDTLSPDSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 521 ~~a~~kVVIIDEID~Ls~eaqnaLLklLEepp~~VifILaT 561 (1152)
......+|+|||++.++. ....+...+.+. +..+|++.
T Consensus 76 ~~~~~dvI~IDE~QFf~d-~i~~~~~~~~~~--g~~Viv~G 113 (139)
T d2b8ta1 76 FNDETKVIGIDEVQFFDD-RICEVANILAEN--GFVVIISG 113 (139)
T ss_dssp SCTTCCEEEECSGGGSCT-HHHHHHHHHHHT--TCEEEEEC
T ss_pred cccCcCEEEechhhhcch-hHHHHHHHHHhc--CceEEEEE
Confidence 445678999999999974 455666677663 33455554
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.77 E-value=0.23 Score=47.01 Aligned_cols=20 Identities=30% Similarity=0.423 Sum_probs=18.0
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||++++.+..
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=88.69 E-value=0.17 Score=55.80 Aligned_cols=51 Identities=18% Similarity=0.210 Sum_probs=39.4
Q ss_pred CCcCcccCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 418 RTFRDLVGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 418 ~sFddLVGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..|+++--.+...+.|+.++.... -.+||+||+|+||||+..++...++..
T Consensus 135 ~~l~~LG~~~~~~~~l~~l~~~~~--GliLvtGpTGSGKSTTl~~~l~~~~~~ 185 (401)
T d1p9ra_ 135 LDLHSLGMTAHNHDNFRRLIKRPH--GIILVTGPTGSGKSTTLYAGLQELNSS 185 (401)
T ss_dssp CCGGGSCCCHHHHHHHHHHHTSSS--EEEEEECSTTSCHHHHHHHHHHHHCCT
T ss_pred hhhhhhcccHHHHHHHHHHHhhhh--ceEEEEcCCCCCccHHHHHHhhhhcCC
Confidence 356777666777777877765433 368999999999999999999988653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.49 E-value=1 Score=42.19 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68899999999999998865
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.11 E-value=0.75 Score=44.19 Aligned_cols=23 Identities=26% Similarity=0.444 Sum_probs=20.4
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+.++|.|+||+|||++...|...
T Consensus 4 p~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 4 PSIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.82 E-value=0.26 Score=46.12 Aligned_cols=21 Identities=24% Similarity=0.360 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|.+|+|||+++..+...
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988653
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.54 E-value=0.76 Score=43.60 Aligned_cols=20 Identities=30% Similarity=0.458 Sum_probs=18.4
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=87.53 E-value=0.16 Score=49.46 Aligned_cols=24 Identities=33% Similarity=0.408 Sum_probs=20.0
Q ss_pred CCcEEEEEcCCCchHHHHHHHHHH
Q 036794 442 VGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 442 i~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.+..++|+|+||+|||++|..++.
T Consensus 25 ~G~~~~I~G~~G~GKT~la~~~~~ 48 (242)
T d1tf7a1 25 IGRSTLVSGTSGTGKTLFSIQFLY 48 (242)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHH
Confidence 345899999999999999976654
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=87.43 E-value=0.97 Score=46.24 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.....++|.|.+|+|||++...|..
T Consensus 30 ~~~l~I~LvG~tg~GKSSliN~ilg 54 (257)
T d1h65a_ 30 VNSLTILVMGKGGVGKSSTVNSIIG 54 (257)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCcHHHHHHHHhC
Confidence 4445799999999999999999864
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.13 E-value=0.24 Score=47.07 Aligned_cols=20 Identities=25% Similarity=0.489 Sum_probs=18.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||+++..+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999988865
|
| >d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase DDX48 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Probable ATP-dependent RNA helicase DDX48 species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.11 E-value=0.66 Score=46.74 Aligned_cols=41 Identities=20% Similarity=0.321 Sum_probs=27.8
Q ss_pred CCceEEEEeCCCCCCHH-HHHHHHHHHhhCCCCEEEEEEcCC
Q 036794 523 SQYRIFVFDDCDTLSPD-SWSAISKVVDRAPRRVVFILVSSS 563 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~e-aqnaLLklLEepp~~VifILaTN~ 563 (1152)
..-+.++|||+|.|... ....+..+++..+.+.-+|+.+..
T Consensus 158 ~~l~~lVlDEaD~ll~~~f~~~i~~I~~~l~~~~Q~ilfSAT 199 (222)
T d2j0sa1 158 RAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPATQVVLISAT 199 (222)
T ss_dssp TTCCEEEEETHHHHTSTTTHHHHHHHHTTSCTTCEEEEEESC
T ss_pred ccceeeeecchhHhhhcCcHHHHHHHHHhCCCCCEEEEEEEe
Confidence 45679999999987554 455677777776666555555443
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=87.08 E-value=2.4 Score=39.40 Aligned_cols=21 Identities=14% Similarity=0.230 Sum_probs=19.0
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
.+.|.|.+|+|||++..+|.+
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~ 27 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLG 27 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999964
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.90 E-value=0.62 Score=43.92 Aligned_cols=20 Identities=30% Similarity=0.459 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999998864
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=86.64 E-value=1 Score=41.92 Aligned_cols=20 Identities=25% Similarity=0.394 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|++|+|||++...|..
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999998865
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=86.63 E-value=1.3 Score=42.27 Aligned_cols=21 Identities=19% Similarity=0.227 Sum_probs=18.9
Q ss_pred EEEEEcCCCchHHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAk 465 (1152)
.+.|.|+||+||||+..+|..
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g 45 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHhcC
Confidence 488999999999999999964
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.41 E-value=0.33 Score=46.72 Aligned_cols=21 Identities=29% Similarity=0.328 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|.+|+|||++++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 789999999999999888653
|
| >d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Spliceosome RNA helicase BAT1 (UAP56) species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.18 E-value=0.55 Score=46.51 Aligned_cols=39 Identities=18% Similarity=0.494 Sum_probs=25.5
Q ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhhCCCCEEEEEEc
Q 036794 523 SQYRIFVFDDCDTLSP--DSWSAISKVVDRAPRRVVFILVS 561 (1152)
Q Consensus 523 a~~kVVIIDEID~Ls~--eaqnaLLklLEepp~~VifILaT 561 (1152)
..-+.++|||+|.|.. ...+.+..+++..+.+..+|+.+
T Consensus 144 ~~l~~lVlDEaD~ll~~~~~~~~i~~I~~~~~~~~Q~il~S 184 (207)
T d1t6na_ 144 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFS 184 (207)
T ss_dssp TTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEE
T ss_pred cccceeehhhhhhhhhcCCcHHHHHHHHHhCCCCCEEEEEe
Confidence 5567999999997653 34455666666655555555544
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=86.10 E-value=1 Score=42.17 Aligned_cols=20 Identities=25% Similarity=0.383 Sum_probs=17.9
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||++...|.
T Consensus 18 kI~vvG~~~vGKSsLi~~l~ 37 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLA 37 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999998873
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=85.87 E-value=0.12 Score=49.92 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 441 KVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 441 ri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
..|-.+.|.|+.|+||||+++.|++.++.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~~ 35 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKND 35 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34557889999999999999999988754
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=85.44 E-value=0.27 Score=47.91 Aligned_cols=24 Identities=21% Similarity=0.380 Sum_probs=20.9
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|.||+|+||+++++.|.+..
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 458899999999999999988763
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=85.36 E-value=0.24 Score=49.53 Aligned_cols=24 Identities=29% Similarity=0.574 Sum_probs=21.3
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
..++|.||+|+|||++.+.|.+..
T Consensus 3 ~livi~GPSG~GK~tl~~~L~~~~ 26 (205)
T d1s96a_ 3 TLYIVSAPSGAGKSSLIQALLKTQ 26 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhhC
Confidence 468999999999999999998874
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.33 E-value=0.56 Score=43.93 Aligned_cols=21 Identities=24% Similarity=0.417 Sum_probs=18.5
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
+++.|.+|+|||++++.+...
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 689999999999999988653
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=85.03 E-value=0.25 Score=48.78 Aligned_cols=24 Identities=42% Similarity=0.682 Sum_probs=21.4
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
+++|.|++|.||||+...|.+.+.
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 578999999999999999987764
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.80 E-value=0.77 Score=43.50 Aligned_cols=19 Identities=47% Similarity=0.787 Sum_probs=17.4
Q ss_pred EEEEcCCCchHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLA 464 (1152)
++|.|.+|+|||+++..+.
T Consensus 6 v~lvG~~~vGKTsLi~~~~ 24 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFA 24 (172)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 6899999999999998875
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.58 E-value=0.31 Score=45.96 Aligned_cols=20 Identities=30% Similarity=0.360 Sum_probs=18.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998865
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.48 E-value=0.28 Score=48.90 Aligned_cols=27 Identities=30% Similarity=0.385 Sum_probs=23.7
Q ss_pred cEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 444 LLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
..+.|.|+.|+||||.++.|++.+...
T Consensus 4 ~lI~ieG~dGsGKsT~~~~L~~~L~~~ 30 (209)
T d1nn5a_ 4 ALIVLEGVDRAGKSTQSRKLVEALCAA 30 (209)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 457888999999999999999998754
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=83.87 E-value=0.28 Score=48.32 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHH
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAke 466 (1152)
+.+|||.|++|+|||++|-.+.+.
T Consensus 14 g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 14 GLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHT
T ss_pred CEEEEEEeCCCCCHHHHHHHHHHc
Confidence 357999999999999999888764
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.98 E-value=0.69 Score=48.74 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
|-.+-|.|++|+||||++..|...+.
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L~ 52 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHLM 52 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHHH
Confidence 44555899999999999999987764
|
| >d1rifa_ c.37.1.23 (A:) DNA helicase UvsW {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: DNA helicase UvsW domain: DNA helicase UvsW species: Bacteriophage T4 [TaxId: 10665]
Probab=82.92 E-value=1.6 Score=45.24 Aligned_cols=40 Identities=15% Similarity=0.246 Sum_probs=29.2
Q ss_pred cCcHHHHHHHHHHHHhCCCCcEEEEEcCCCchHHHHHHHHHHHH
Q 036794 424 VGQNLVAQALSNAVMRRKVGLLYVFYGPHGTGKTSCARIFARAL 467 (1152)
Q Consensus 424 VGQe~v~q~Lk~aL~~gri~~~yLL~GPpGTGKTtlARaLAkeL 467 (1152)
.-.+...+.+..+++.++ .++.-|+|+|||.+|-.++..+
T Consensus 113 ~~rdyQ~~av~~~l~~~~----~il~~pTGsGKT~i~~~i~~~~ 152 (282)
T d1rifa_ 113 EPHWYQKDAVFEGLVNRR----RILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp CCCHHHHHHHHHHHHHSE----EEECCCTTSCHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHhcCC----ceeEEEcccCccHHHHHHHHHh
Confidence 334556677777777653 4677899999999988887654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.79 E-value=0.39 Score=45.54 Aligned_cols=20 Identities=35% Similarity=0.497 Sum_probs=17.1
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
+++.|++|+|||+++..+..
T Consensus 6 i~vvG~~~vGKTsli~~~~~ 25 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLT 25 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC-
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68899999999999987754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=82.76 E-value=0.28 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.297 Sum_probs=16.9
Q ss_pred EEEEEcCCCchHHHHH-HHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCA-RIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlA-RaLAkeL 467 (1152)
.+|+.|+||||||+++ ..++..+
T Consensus 16 ~~lI~g~aGTGKTt~l~~rv~~ll 39 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVITNKIAHLI 39 (306)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEeeCCccHHHHHHHHHHHHH
Confidence 4789999999999764 4444443
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=82.18 E-value=0.4 Score=51.11 Aligned_cols=30 Identities=20% Similarity=0.404 Sum_probs=25.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHHHHcc
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
.+.+-.+-|.|++|+||||+|+.|+..+..
T Consensus 77 ~k~P~iIGIaG~sgSGKSTla~~L~~lL~~ 106 (308)
T d1sq5a_ 77 QRIPYIISIAGSVAVGKSTTARVLQALLSR 106 (308)
T ss_dssp CCCCEEEEEEECTTSSHHHHHHHHHHHHTT
T ss_pred CCCCEEEEEeCCCCCCCcHHHHHHHHHHhh
Confidence 355667889999999999999999998863
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=81.76 E-value=0.41 Score=46.97 Aligned_cols=26 Identities=27% Similarity=0.413 Sum_probs=23.2
Q ss_pred EEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 445 LYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
.+.|.|+.|+||||.++.|++.+...
T Consensus 4 fIviEG~dGsGKsT~~~~L~~~L~~~ 29 (210)
T d4tmka_ 4 YIVIEGLEGAGKTTARNVVVETLEQL 29 (210)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 47899999999999999999988654
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=81.55 E-value=2.1 Score=45.77 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.8
Q ss_pred EEEEcCCCchHHHHHHHHHHHHcc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNC 469 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~ 469 (1152)
+.|-|+-|+||||+++.|++.+..
T Consensus 9 I~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 9 IYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEECCccCCHHHHHHHHHHHhcc
Confidence 679999999999999999998764
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.52 E-value=0.38 Score=43.66 Aligned_cols=21 Identities=24% Similarity=0.482 Sum_probs=18.7
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
++|.|++|+|||++...+...
T Consensus 3 I~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 689999999999999988653
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=81.51 E-value=1.2 Score=42.11 Aligned_cols=20 Identities=25% Similarity=0.350 Sum_probs=17.8
Q ss_pred EEEEEcCCCchHHHHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCARIFA 464 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlARaLA 464 (1152)
-++|.|++|+|||++.+.+.
T Consensus 19 KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48899999999999998873
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=81.46 E-value=0.37 Score=47.89 Aligned_cols=28 Identities=11% Similarity=0.147 Sum_probs=24.4
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHccc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
|..+.|-|+.|+||||+++.|++.+...
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~~ 29 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEW 29 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTTS
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhhc
Confidence 4468899999999999999999988653
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=81.16 E-value=0.27 Score=46.73 Aligned_cols=20 Identities=30% Similarity=0.492 Sum_probs=8.2
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++++.+..
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEECCCCC-----------
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67899999999999988864
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=81.14 E-value=0.4 Score=44.01 Aligned_cols=20 Identities=25% Similarity=0.353 Sum_probs=18.3
Q ss_pred EEEEcCCCchHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAk 465 (1152)
++|.|.+|+|||++.+.+..
T Consensus 8 I~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 8 ILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhC
Confidence 78999999999999998865
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=81.07 E-value=0.35 Score=47.75 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.1
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.++||.||+|.|||++|-.+...
T Consensus 16 ~gvli~G~sG~GKS~lal~l~~~ 38 (177)
T d1knxa2 16 VGVLLTGRSGIGKSECALDLINK 38 (177)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47999999999999999888653
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| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=81.04 E-value=0.47 Score=44.18 Aligned_cols=26 Identities=27% Similarity=0.305 Sum_probs=20.6
Q ss_pred CCCCcEEEEEcCCCchHHHHHHHHHH
Q 036794 440 RKVGLLYVFYGPHGTGKTSCARIFAR 465 (1152)
Q Consensus 440 gri~~~yLL~GPpGTGKTtlARaLAk 465 (1152)
.+-..-++|.|++|+|||++...|..
T Consensus 10 ~~k~~kI~lvG~~~vGKTsLl~~l~~ 35 (186)
T d1f6ba_ 10 YKKTGKLVFLGLDNAGKTTLLHMLKD 35 (186)
T ss_dssp TTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 33344589999999999999988843
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=80.92 E-value=11 Score=34.02 Aligned_cols=21 Identities=19% Similarity=0.279 Sum_probs=19.1
Q ss_pred EEEEcCCCchHHHHHHHHHHH
Q 036794 446 YVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAke 466 (1152)
+.|.|.||+|||+++.+|...
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 679999999999999999765
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=80.87 E-value=0.46 Score=45.97 Aligned_cols=25 Identities=20% Similarity=0.337 Sum_probs=22.3
Q ss_pred EEEEcCCCchHHHHHHHHHHHHccc
Q 036794 446 YVFYGPHGTGKTSCARIFARALNCQ 470 (1152)
Q Consensus 446 yLL~GPpGTGKTtlARaLAkeL~~~ 470 (1152)
+.|.|..|+||||+++.|++.+...
T Consensus 3 I~ieG~dGsGKST~~~~L~~~l~~~ 27 (208)
T d1gsia_ 3 IAIEGVDGAGKRTLVEKLSGAFRAA 27 (208)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 6789999999999999999988643
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=80.82 E-value=2.8 Score=40.20 Aligned_cols=63 Identities=8% Similarity=0.123 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCceEEEEeCCCCCCHH---HHHHHHHHHhhCCCCEEEEEEcCCCCcchHHHHccce
Q 036794 511 DLLDNMVTSRPPSQYRIFVFDDCDTLSPD---SWSAISKVVDRAPRRVVFILVSSSLDALPHIIISRCQ 576 (1152)
Q Consensus 511 eLle~a~~~P~~a~~kVVIIDEID~Ls~e---aqnaLLklLEepp~~VifILaTN~~dkL~~aL~SR~q 576 (1152)
..++.+...-..+.+.+||+||+...-.- ..+.++.+|+..|..+-+|++..+.. +.|..+..
T Consensus 81 ~~~~~a~~~~~~~~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p---~~L~e~AD 146 (157)
T d1g5ta_ 81 AVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCH---RDILDLAD 146 (157)
T ss_dssp HHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCC---HHHHHHCS
T ss_pred HHHHHHHHHhhcCccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCC---HHHHHhcc
Confidence 34444443344577899999998543111 23578888998899999999987643 44555554
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=80.62 E-value=0.46 Score=45.66 Aligned_cols=25 Identities=20% Similarity=0.405 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCchHHHHHHHHHHHHc
Q 036794 443 GLLYVFYGPHGTGKTSCARIFARALN 468 (1152)
Q Consensus 443 ~~~yLL~GPpGTGKTtlARaLAkeL~ 468 (1152)
|-.+-|+|++|+||||+|+.|. ..+
T Consensus 3 p~IIgitG~~gSGKstva~~l~-~~g 27 (191)
T d1uf9a_ 3 PIIIGITGNIGSGKSTVAALLR-SWG 27 (191)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HTT
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCC
Confidence 3345689999999999999984 444
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=80.26 E-value=0.44 Score=46.60 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.2
Q ss_pred cEEEEEcCCCchHHHHHHHHHHH
Q 036794 444 LLYVFYGPHGTGKTSCARIFARA 466 (1152)
Q Consensus 444 ~~yLL~GPpGTGKTtlARaLAke 466 (1152)
.++||.|++|.|||++|-.+.+.
T Consensus 16 ~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 16 VGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHHc
Confidence 47999999999999999887665
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=80.08 E-value=0.61 Score=48.14 Aligned_cols=23 Identities=22% Similarity=0.274 Sum_probs=17.0
Q ss_pred EEEEEcCCCchHHHHH-HHHHHHH
Q 036794 445 LYVFYGPHGTGKTSCA-RIFARAL 467 (1152)
Q Consensus 445 ~yLL~GPpGTGKTtlA-RaLAkeL 467 (1152)
.+|+.|+||||||+++ +.++..+
T Consensus 26 ~~lV~g~aGSGKTt~l~~ri~~ll 49 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVLTHRIAYLM 49 (318)
T ss_dssp CEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CEEEEecCCccHHHHHHHHHHHHH
Confidence 3789999999999765 4445444
|